PP4_RS18805 e98d5be723b2b6a0e8750be38ec80aa6 294 PANTHER PTHR11079 20 294 1.1E-98 T 22-04-2016 PP4_RS18805 e98d5be723b2b6a0e8750be38ec80aa6 294 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 133 147 - T 22-04-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS18805 e98d5be723b2b6a0e8750be38ec80aa6 294 Pfam PF00849 RNA pseudouridylate synthase 94 241 9.9E-25 T 22-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS18805 e98d5be723b2b6a0e8750be38ec80aa6 294 PANTHER PTHR11079:SF61 20 294 1.1E-98 T 22-04-2016 PP4_RS18805 e98d5be723b2b6a0e8750be38ec80aa6 294 SUPERFAMILY SSF55120 78 290 5.76E-52 T 22-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS20530 2dc19e40ff91abdcbfbe3fdd1312a820 321 Pfam PF01758 Sodium Bile acid symporter family 42 218 1.2E-38 T 22-04-2016 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 PP4_RS20530 2dc19e40ff91abdcbfbe3fdd1312a820 321 PANTHER PTHR10361 1 308 1.9E-83 T 22-04-2016 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 PP4_RS01305 5bc368b2e5efdc948bc5958d336a17dc 197 SUPERFAMILY SSF52218 1 165 5.2E-29 T 22-04-2016 IPR029039 Flavoprotein-like domain PP4_RS01305 5bc368b2e5efdc948bc5958d336a17dc 197 Gene3D G3DSA:3.40.50.360 3 170 5.4E-29 T 22-04-2016 IPR029039 Flavoprotein-like domain PP4_RS01305 5bc368b2e5efdc948bc5958d336a17dc 197 Pfam PF03358 NADPH-dependent FMN reductase 1 137 6.7E-30 T 22-04-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 PP4_RS01305 5bc368b2e5efdc948bc5958d336a17dc 197 PANTHER PTHR30543 1 193 7.1E-40 T 22-04-2016 PP4_RS01305 5bc368b2e5efdc948bc5958d336a17dc 197 PANTHER PTHR30543:SF1 1 193 7.1E-40 T 22-04-2016 PP4_RS01305 5bc368b2e5efdc948bc5958d336a17dc 197 TIGRFAM TIGR03567 FMN_reduc_SsuE: FMN reductase 3 171 7.2E-73 T 22-04-2016 IPR020048 NADPH-dependent FMN reductase, SsuE GO:0008752|GO:0046306|GO:0055114 KEGG: 00740+1.5.1.38|MetaCyc: PWY-7723 PP4_RS27210 dc7aecb400a7bc40edef929d930dbd41 367 Pfam PF13416 Bacterial extracellular solute-binding protein 45 332 2.6E-34 T 22-04-2016 PP4_RS27210 dc7aecb400a7bc40edef929d930dbd41 367 Gene3D G3DSA:3.40.190.10 149 316 7.3E-69 T 22-04-2016 PP4_RS27210 dc7aecb400a7bc40edef929d930dbd41 367 PANTHER PTHR30222 1 366 1.2E-171 T 22-04-2016 PP4_RS27210 dc7aecb400a7bc40edef929d930dbd41 367 PANTHER PTHR30222:SF11 1 366 1.2E-171 T 22-04-2016 PP4_RS27210 dc7aecb400a7bc40edef929d930dbd41 367 Gene3D G3DSA:3.40.190.10 29 148 1.3E-19 T 22-04-2016 PP4_RS27210 dc7aecb400a7bc40edef929d930dbd41 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 33 49 4.2E-66 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS27210 dc7aecb400a7bc40edef929d930dbd41 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 179 198 4.2E-66 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS27210 dc7aecb400a7bc40edef929d930dbd41 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 92 105 4.2E-66 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS27210 dc7aecb400a7bc40edef929d930dbd41 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 125 141 4.2E-66 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS27210 dc7aecb400a7bc40edef929d930dbd41 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 49 70 4.2E-66 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS27210 dc7aecb400a7bc40edef929d930dbd41 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 156 170 4.2E-66 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS27210 dc7aecb400a7bc40edef929d930dbd41 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 216 235 4.2E-66 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS27210 dc7aecb400a7bc40edef929d930dbd41 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 311 337 4.2E-66 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS27210 dc7aecb400a7bc40edef929d930dbd41 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 76 90 4.2E-66 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS27210 dc7aecb400a7bc40edef929d930dbd41 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 266 285 4.2E-66 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS27210 dc7aecb400a7bc40edef929d930dbd41 367 SUPERFAMILY SSF53850 27 366 2.5E-100 T 22-04-2016 PP4_RS27210 dc7aecb400a7bc40edef929d930dbd41 367 PIRSF PIRSF019574 1 367 4.1E-143 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS19460 079891fbef73bfa8784476355de723a3 322 SMART SM00729 11 212 1.6E-5 T 22-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 PP4_RS19460 079891fbef73bfa8784476355de723a3 322 Pfam PF06463 Molybdenum Cofactor Synthesis C 181 307 1.8E-28 T 22-04-2016 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 PP4_RS19460 079891fbef73bfa8784476355de723a3 322 SUPERFAMILY SSF102114 3 287 9.29E-59 T 22-04-2016 PP4_RS19460 079891fbef73bfa8784476355de723a3 322 Pfam PF04055 Radical SAM superfamily 16 174 1.3E-23 T 22-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 PP4_RS19460 079891fbef73bfa8784476355de723a3 322 PANTHER PTHR22960 1 275 4.4E-82 T 22-04-2016 PP4_RS19460 079891fbef73bfa8784476355de723a3 322 Gene3D G3DSA:3.20.20.70 3 285 6.9E-59 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS19460 079891fbef73bfa8784476355de723a3 322 Pfam PF13353 4Fe-4S single cluster domain 15 116 1.9E-5 T 22-04-2016 PP4_RS04620 07d408587017a844dd092d492da584a5 507 Gene3D G3DSA:3.20.130.10 305 487 5.6E-73 T 22-04-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 PP4_RS04620 07d408587017a844dd092d492da584a5 507 Pfam PF05683 Fumarase C-terminus 289 488 1.5E-79 T 22-04-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 PP4_RS04620 07d408587017a844dd092d492da584a5 507 PIRSF PIRSF001394 1 506 1.3E-223 T 22-04-2016 IPR011167 Iron-dependent fumarate hydratase GO:0004333|GO:0006091 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 PP4_RS04620 07d408587017a844dd092d492da584a5 507 PANTHER PTHR30389:SF1 1 507 0.0 T 22-04-2016 PP4_RS04620 07d408587017a844dd092d492da584a5 507 Pfam PF05681 Fumarate hydratase (Fumerase) 11 285 6.0E-101 T 22-04-2016 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 PP4_RS04620 07d408587017a844dd092d492da584a5 507 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 326 486 6.7E-50 T 22-04-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 PP4_RS04620 07d408587017a844dd092d492da584a5 507 PANTHER PTHR30389 1 507 0.0 T 22-04-2016 PP4_RS04620 07d408587017a844dd092d492da584a5 507 SUPERFAMILY SSF117457 317 487 5.23E-64 T 22-04-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 PP4_RS04620 07d408587017a844dd092d492da584a5 507 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 12 286 2.0E-65 T 22-04-2016 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 PP4_RS19075 be317e61abf35fecebe7519b7051f7ad 351 PANTHER PTHR30349 1 113 1.2E-46 T 22-04-2016 PP4_RS19075 be317e61abf35fecebe7519b7051f7ad 351 Gene3D G3DSA:3.10.310.10 168 323 3.5E-56 T 22-04-2016 PP4_RS19075 be317e61abf35fecebe7519b7051f7ad 351 SUPERFAMILY SSF54506 162 344 4.39E-59 T 22-04-2016 PP4_RS19075 be317e61abf35fecebe7519b7051f7ad 351 Pfam PF04303 PrpF protein 1 344 4.9E-130 T 22-04-2016 IPR007400 PrpF protein PP4_RS19075 be317e61abf35fecebe7519b7051f7ad 351 SUPERFAMILY SSF54506 1 158 1.41E-58 T 22-04-2016 PP4_RS19075 be317e61abf35fecebe7519b7051f7ad 351 PANTHER PTHR30349:SF39 1 113 1.2E-46 T 22-04-2016 PP4_RS19075 be317e61abf35fecebe7519b7051f7ad 351 Gene3D G3DSA:3.10.310.10 1 167 3.5E-72 T 22-04-2016 PP4_RS13805 cca4a4675a23c9a2bb76de2585e74ebc 262 Gene3D G3DSA:3.40.190.10 117 211 3.4E-21 T 22-04-2016 PP4_RS13805 cca4a4675a23c9a2bb76de2585e74ebc 262 PANTHER PTHR18966 25 256 3.0E-47 T 22-04-2016 PP4_RS13805 cca4a4675a23c9a2bb76de2585e74ebc 262 PANTHER PTHR18966:SF191 25 256 3.0E-47 T 22-04-2016 PP4_RS13805 cca4a4675a23c9a2bb76de2585e74ebc 262 Gene3D G3DSA:3.40.190.10 219 261 4.0E-43 T 22-04-2016 PP4_RS13805 cca4a4675a23c9a2bb76de2585e74ebc 262 Gene3D G3DSA:3.40.190.10 36 116 4.0E-43 T 22-04-2016 PP4_RS13805 cca4a4675a23c9a2bb76de2585e74ebc 262 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 40 258 1.7E-61 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS13805 cca4a4675a23c9a2bb76de2585e74ebc 262 SUPERFAMILY SSF53850 8 261 2.11E-68 T 22-04-2016 PP4_RS13805 cca4a4675a23c9a2bb76de2585e74ebc 262 SMART SM00079 39 259 0.0019 T 22-04-2016 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 PP4_RS13805 cca4a4675a23c9a2bb76de2585e74ebc 262 SMART SM00062 39 260 2.2E-66 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS08895 3ee57e6da7295675ae3a82cd1a9cdfb5 816 SMART SM00843 748 813 2.2E-36 T 22-04-2016 IPR018541 FtsK gamma domain PP4_RS08895 3ee57e6da7295675ae3a82cd1a9cdfb5 816 Gene3D G3DSA:3.40.50.300 403 708 7.9E-96 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS08895 3ee57e6da7295675ae3a82cd1a9cdfb5 816 Pfam PF01580 FtsK/SpoIIIE family 431 641 4.4E-64 T 22-04-2016 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 PP4_RS08895 3ee57e6da7295675ae3a82cd1a9cdfb5 816 SUPERFAMILY SSF52540 403 714 1.86E-52 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS08895 3ee57e6da7295675ae3a82cd1a9cdfb5 816 Pfam PF09397 Ftsk gamma domain 750 810 2.6E-26 T 22-04-2016 IPR018541 FtsK gamma domain PP4_RS08895 3ee57e6da7295675ae3a82cd1a9cdfb5 816 PANTHER PTHR22683 209 811 1.5E-269 T 22-04-2016 PP4_RS08895 3ee57e6da7295675ae3a82cd1a9cdfb5 816 SUPERFAMILY SSF46785 748 812 1.45E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS08895 3ee57e6da7295675ae3a82cd1a9cdfb5 816 PANTHER PTHR22683:SF41 209 811 1.5E-269 T 22-04-2016 PP4_RS08895 3ee57e6da7295675ae3a82cd1a9cdfb5 816 Pfam PF13491 4TM region of DNA translocase FtsK/SpoIIIE 11 181 6.0E-40 T 22-04-2016 IPR025199 DNA translocase FtsK, 4TM region PP4_RS25975 4ff7f1db2cd97640ef2d9b472e63481e 578 SMART SM01016 3 91 3.7E-37 T 22-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 PP4_RS25975 4ff7f1db2cd97640ef2d9b472e63481e 578 Pfam PF00750 tRNA synthetases class I (R) 101 448 7.6E-129 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 PP4_RS25975 4ff7f1db2cd97640ef2d9b472e63481e 578 Pfam PF05746 DALR anticodon binding domain 462 578 3.2E-32 T 22-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 PP4_RS25975 4ff7f1db2cd97640ef2d9b472e63481e 578 Gene3D G3DSA:3.40.50.620 114 455 5.3E-111 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS25975 4ff7f1db2cd97640ef2d9b472e63481e 578 PRINTS PR01038 Arginyl-tRNA synthetase signature 158 171 3.2E-27 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 PP4_RS25975 4ff7f1db2cd97640ef2d9b472e63481e 578 PRINTS PR01038 Arginyl-tRNA synthetase signature 119 134 3.2E-27 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 PP4_RS25975 4ff7f1db2cd97640ef2d9b472e63481e 578 PRINTS PR01038 Arginyl-tRNA synthetase signature 305 326 3.2E-27 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 PP4_RS25975 4ff7f1db2cd97640ef2d9b472e63481e 578 PRINTS PR01038 Arginyl-tRNA synthetase signature 134 150 3.2E-27 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 PP4_RS25975 4ff7f1db2cd97640ef2d9b472e63481e 578 SUPERFAMILY SSF55190 2 106 2.22E-23 T 22-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 PP4_RS25975 4ff7f1db2cd97640ef2d9b472e63481e 578 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 7 578 8.9E-171 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 PP4_RS25975 4ff7f1db2cd97640ef2d9b472e63481e 578 SUPERFAMILY SSF52374 114 455 6.0E-92 T 22-04-2016 PP4_RS25975 4ff7f1db2cd97640ef2d9b472e63481e 578 PANTHER PTHR11956 1 578 1.1E-255 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 PP4_RS25975 4ff7f1db2cd97640ef2d9b472e63481e 578 SUPERFAMILY SSF47323 456 578 1.18E-33 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS25975 4ff7f1db2cd97640ef2d9b472e63481e 578 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 127 138 - T 22-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS25975 4ff7f1db2cd97640ef2d9b472e63481e 578 Hamap MF_00123 Arginine--tRNA ligase [argS]. 3 578 26.927 T 22-04-2016 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 PP4_RS25975 4ff7f1db2cd97640ef2d9b472e63481e 578 SMART SM00836 462 578 1.2E-36 T 22-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 PP4_RS25975 4ff7f1db2cd97640ef2d9b472e63481e 578 PANTHER PTHR11956:SF1 1 578 1.1E-255 T 22-04-2016 PP4_RS25975 4ff7f1db2cd97640ef2d9b472e63481e 578 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 4 90 3.6E-25 T 22-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 PP4_RS25975 4ff7f1db2cd97640ef2d9b472e63481e 578 Gene3D G3DSA:3.30.1360.70 2 108 4.2E-32 T 22-04-2016 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: REACT_71 PP4_RS25975 4ff7f1db2cd97640ef2d9b472e63481e 578 Gene3D G3DSA:1.10.730.10 456 578 8.7E-34 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS13935 e5600f8021a9a12be7387f1726a259df 421 Gene3D G3DSA:1.10.287.130 191 248 8.2E-16 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS13935 e5600f8021a9a12be7387f1726a259df 421 SUPERFAMILY SSF158472 146 198 4.32E-8 T 22-04-2016 PP4_RS13935 e5600f8021a9a12be7387f1726a259df 421 Pfam PF00512 His Kinase A (phospho-acceptor) domain 202 262 1.2E-12 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS13935 e5600f8021a9a12be7387f1726a259df 421 Gene3D G3DSA:3.30.565.10 249 417 3.0E-35 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS13935 e5600f8021a9a12be7387f1726a259df 421 Pfam PF00672 HAMP domain 132 196 4.4E-9 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS13935 e5600f8021a9a12be7387f1726a259df 421 SUPERFAMILY SSF47384 185 262 4.71E-15 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS13935 e5600f8021a9a12be7387f1726a259df 421 PANTHER PTHR24423 147 416 6.3E-63 T 22-04-2016 PP4_RS13935 e5600f8021a9a12be7387f1726a259df 421 PANTHER PTHR24423:SF564 147 416 6.3E-63 T 22-04-2016 PP4_RS13935 e5600f8021a9a12be7387f1726a259df 421 PRINTS PR00344 Bacterial sensor protein C-terminal signature 403 416 1.3E-11 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS13935 e5600f8021a9a12be7387f1726a259df 421 PRINTS PR00344 Bacterial sensor protein C-terminal signature 347 361 1.3E-11 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS13935 e5600f8021a9a12be7387f1726a259df 421 PRINTS PR00344 Bacterial sensor protein C-terminal signature 379 397 1.3E-11 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS13935 e5600f8021a9a12be7387f1726a259df 421 PRINTS PR00344 Bacterial sensor protein C-terminal signature 365 375 1.3E-11 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS13935 e5600f8021a9a12be7387f1726a259df 421 SMART SM00387 308 419 3.8E-25 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS13935 e5600f8021a9a12be7387f1726a259df 421 SUPERFAMILY SSF55874 252 417 9.17E-36 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS13935 e5600f8021a9a12be7387f1726a259df 421 SMART SM00388 201 263 1.7E-13 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS13935 e5600f8021a9a12be7387f1726a259df 421 SMART SM00304 145 200 1.5E-6 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS13935 e5600f8021a9a12be7387f1726a259df 421 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 309 417 6.2E-18 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS00885 bd142dc24a3a8b1fdbab565ef6793894 264 Gene3D G3DSA:1.25.40.10 52 228 1.7E-30 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS00885 bd142dc24a3a8b1fdbab565ef6793894 264 SUPERFAMILY SSF81901 51 253 4.1E-26 T 22-04-2016 PP4_RS00885 bd142dc24a3a8b1fdbab565ef6793894 264 Pfam PF08238 Sel1 repeat 111 141 0.33 T 22-04-2016 IPR006597 Sel1-like repeat PP4_RS00885 bd142dc24a3a8b1fdbab565ef6793894 264 Pfam PF08238 Sel1 repeat 188 218 7.4E-5 T 22-04-2016 IPR006597 Sel1-like repeat PP4_RS00885 bd142dc24a3a8b1fdbab565ef6793894 264 Pfam PF08238 Sel1 repeat 72 106 3.6 T 22-04-2016 IPR006597 Sel1-like repeat PP4_RS00885 bd142dc24a3a8b1fdbab565ef6793894 264 Pfam PF08238 Sel1 repeat 144 182 0.31 T 22-04-2016 IPR006597 Sel1-like repeat PP4_RS00885 bd142dc24a3a8b1fdbab565ef6793894 264 PANTHER PTHR11102 22 233 1.4E-24 T 22-04-2016 PP4_RS00885 bd142dc24a3a8b1fdbab565ef6793894 264 SMART SM00671 107 142 0.013 T 22-04-2016 IPR006597 Sel1-like repeat PP4_RS00885 bd142dc24a3a8b1fdbab565ef6793894 264 SMART SM00671 143 183 9.7 T 22-04-2016 IPR006597 Sel1-like repeat PP4_RS00885 bd142dc24a3a8b1fdbab565ef6793894 264 SMART SM00671 71 106 0.17 T 22-04-2016 IPR006597 Sel1-like repeat PP4_RS00885 bd142dc24a3a8b1fdbab565ef6793894 264 SMART SM00671 184 219 0.0064 T 22-04-2016 IPR006597 Sel1-like repeat PP4_RS25885 d84fa76def1dd31593b374c20ef8a135 299 Gene3D G3DSA:1.10.10.10 1 84 8.7E-32 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS25885 d84fa76def1dd31593b374c20ef8a135 299 PANTHER PTHR30346 1 292 4.3E-106 T 22-04-2016 PP4_RS25885 d84fa76def1dd31593b374c20ef8a135 299 SUPERFAMILY SSF46785 1 84 5.16E-26 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS25885 d84fa76def1dd31593b374c20ef8a135 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 7.8E-11 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS25885 d84fa76def1dd31593b374c20ef8a135 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 7.8E-11 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS25885 d84fa76def1dd31593b374c20ef8a135 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 7.8E-11 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS25885 d84fa76def1dd31593b374c20ef8a135 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 2.6E-24 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS25885 d84fa76def1dd31593b374c20ef8a135 299 PANTHER PTHR30346:SF7 1 292 4.3E-106 T 22-04-2016 PP4_RS25885 d84fa76def1dd31593b374c20ef8a135 299 SUPERFAMILY SSF53850 91 295 7.91E-36 T 22-04-2016 PP4_RS25885 d84fa76def1dd31593b374c20ef8a135 299 Gene3D G3DSA:3.40.190.10 173 268 8.9E-33 T 22-04-2016 PP4_RS25885 d84fa76def1dd31593b374c20ef8a135 299 Pfam PF03466 LysR substrate binding domain 91 292 4.4E-40 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS25885 d84fa76def1dd31593b374c20ef8a135 299 Gene3D G3DSA:3.40.190.10 88 172 1.2E-24 T 22-04-2016 PP4_RS09805 fd79756bf9019721312693873279e933 387 Gene3D G3DSA:3.40.50.300 1 196 3.7E-28 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS09805 fd79756bf9019721312693873279e933 387 Gene3D G3DSA:3.40.50.300 229 368 3.7E-28 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS09805 fd79756bf9019721312693873279e933 387 PANTHER PTHR32182:SF13 1 374 3.8E-66 T 22-04-2016 PP4_RS09805 fd79756bf9019721312693873279e933 387 PIRSF PIRSF029347 1 387 6.4E-169 T 22-04-2016 IPR014555 RecF-like PP4_RS09805 fd79756bf9019721312693873279e933 387 SUPERFAMILY SSF52540 1 123 1.16E-24 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS09805 fd79756bf9019721312693873279e933 387 SUPERFAMILY SSF52540 224 370 1.16E-24 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS09805 fd79756bf9019721312693873279e933 387 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 243 349 1.2E-15 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 PP4_RS09805 fd79756bf9019721312693873279e933 387 PANTHER PTHR32182 1 374 3.8E-66 T 22-04-2016 PP4_RS09805 fd79756bf9019721312693873279e933 387 Pfam PF13175 AAA ATPase domain 1 48 2.5E-8 T 22-04-2016 PP4_RS05695 eb73ba474fbb2e7d4280b2da34ca41de 412 Gene3D G3DSA:2.40.160.10 32 412 1.3E-146 T 22-04-2016 IPR023614 Porin domain PP4_RS05695 eb73ba474fbb2e7d4280b2da34ca41de 412 Pfam PF03573 outer membrane porin, OprD family 27 410 1.7E-151 T 22-04-2016 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 PP4_RS05695 eb73ba474fbb2e7d4280b2da34ca41de 412 PANTHER PTHR34596 1 412 5.8E-159 T 22-04-2016 PP4_RS00735 b4f6f4d820433662f1d7d7554ad63567 478 PIRSF PIRSF000204 1 478 1.9E-215 T 22-04-2016 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 PP4_RS00735 b4f6f4d820433662f1d7d7554ad63567 478 SUPERFAMILY SSF52467 306 478 2.77E-74 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain PP4_RS00735 b4f6f4d820433662f1d7d7554ad63567 478 PANTHER PTHR10160:SF24 3 477 2.2E-223 T 22-04-2016 PP4_RS00735 b4f6f4d820433662f1d7d7554ad63567 478 Gene3D G3DSA:3.40.50.1220 302 478 3.8E-86 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain PP4_RS00735 b4f6f4d820433662f1d7d7554ad63567 478 PANTHER PTHR10160 3 477 2.2E-223 T 22-04-2016 PP4_RS00735 b4f6f4d820433662f1d7d7554ad63567 478 Pfam PF02233 NAD(P) transhydrogenase beta subunit 7 475 5.0E-187 T 22-04-2016 IPR012136 NADP transhydrogenase, beta subunit GO:0008750|GO:0016021|GO:0050661|GO:0055114 KEGG: 00760+1.6.1.2 PP4_RS24085 e5f9850719d6dd6787d998f0cee81ace 153 Pfam PF01381 Helix-turn-helix 11 62 2.8E-7 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS24085 e5f9850719d6dd6787d998f0cee81ace 153 Pfam PF13384 Homeodomain-like domain 112 146 6.9E-7 T 22-04-2016 PP4_RS24085 e5f9850719d6dd6787d998f0cee81ace 153 Gene3D G3DSA:1.10.10.60 117 147 1.4E-4 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS24085 e5f9850719d6dd6787d998f0cee81ace 153 SUPERFAMILY SSF47413 2 65 1.46E-8 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS24085 e5f9850719d6dd6787d998f0cee81ace 153 SMART SM00530 10 63 3.7E-5 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS24085 e5f9850719d6dd6787d998f0cee81ace 153 Gene3D G3DSA:1.10.260.40 2 66 3.4E-10 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS05365 fc5620a8425d932d65050b9bd9e57bd3 402 Gene3D G3DSA:1.20.1250.20 211 388 6.5E-11 T 22-04-2016 PP4_RS05365 fc5620a8425d932d65050b9bd9e57bd3 402 Gene3D G3DSA:1.20.1250.20 37 191 4.0E-10 T 22-04-2016 PP4_RS05365 fc5620a8425d932d65050b9bd9e57bd3 402 PANTHER PTHR23534 10 375 3.2E-45 T 22-04-2016 PP4_RS05365 fc5620a8425d932d65050b9bd9e57bd3 402 Pfam PF07690 Major Facilitator Superfamily 22 244 5.5E-10 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS05365 fc5620a8425d932d65050b9bd9e57bd3 402 SUPERFAMILY SSF103473 17 386 3.66E-28 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS22640 c1afd7009c0a48647d2d5269be38b18a 282 SUPERFAMILY SSF54675 11 114 1.2E-33 T 22-04-2016 PP4_RS22640 c1afd7009c0a48647d2d5269be38b18a 282 SUPERFAMILY SSF51690 115 280 2.0E-59 T 22-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 PP4_RS22640 c1afd7009c0a48647d2d5269be38b18a 282 TIGRFAM TIGR00078 nadC: nicotinate-nucleotide diphosphorylase (carboxylating) 17 279 2.7E-94 T 22-04-2016 IPR004393 Nicotinate-nucleotide pyrophosphorylase GO:0004514|GO:0019363 KEGG: 00760+2.4.2.19|MetaCyc: PWY-5316|MetaCyc: PWY-5653|MetaCyc: PWY-7342|UniPathway: UPA00253 PP4_RS22640 c1afd7009c0a48647d2d5269be38b18a 282 PANTHER PTHR32179 1 280 3.8E-125 T 22-04-2016 PP4_RS22640 c1afd7009c0a48647d2d5269be38b18a 282 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 115 279 5.8E-56 T 22-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 PP4_RS22640 c1afd7009c0a48647d2d5269be38b18a 282 PIRSF PIRSF006250 7 282 4.5E-104 T 22-04-2016 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD PP4_RS22640 c1afd7009c0a48647d2d5269be38b18a 282 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 25 113 7.9E-27 T 22-04-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 PP4_RS22640 c1afd7009c0a48647d2d5269be38b18a 282 Gene3D G3DSA:3.90.1170.20 10 135 5.7E-52 T 22-04-2016 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 PP4_RS22640 c1afd7009c0a48647d2d5269be38b18a 282 Gene3D G3DSA:3.20.20.70 136 269 2.3E-59 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS05285 623fa567c3c7c711b32a6428450143bb 182 PANTHER PTHR30335:SF0 95 182 6.5E-16 T 22-04-2016 PP4_RS05285 623fa567c3c7c711b32a6428450143bb 182 PANTHER PTHR30335 95 182 6.5E-16 T 22-04-2016 PP4_RS05285 623fa567c3c7c711b32a6428450143bb 182 Pfam PF02508 Rnf-Nqr subunit, membrane protein 98 179 8.7E-11 T 22-04-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 PP4_RS05285 623fa567c3c7c711b32a6428450143bb 182 PIRSF PIRSF006102 1 182 1.9E-31 T 22-04-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 PP4_RS05975 deb5dd6a4e4498d8e5fdd981448ef170 352 Pfam PF02445 Quinolinate synthetase A protein 34 339 7.6E-104 T 22-04-2016 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342|UniPathway: UPA00253 PP4_RS05975 deb5dd6a4e4498d8e5fdd981448ef170 352 Hamap MF_00567 Quinolinate synthase A [nadA]. 1 346 70.393 T 22-04-2016 IPR023513 Quinolinate synthase A, type 1 GO:0016765 MetaCyc: PWY-5316|MetaCyc: PWY-7342|UniPathway: UPA00253 PP4_RS05975 deb5dd6a4e4498d8e5fdd981448ef170 352 TIGRFAM TIGR00550 nadA: quinolinate synthetase complex, A subunit 29 341 5.4E-112 T 22-04-2016 IPR003473 Quinolinate synthetase A GO:0008987|GO:0009435|GO:0051539 MetaCyc: PWY-5316|MetaCyc: PWY-7342|UniPathway: UPA00253 PP4_RS05975 deb5dd6a4e4498d8e5fdd981448ef170 352 PANTHER PTHR30573 18 351 2.0E-159 T 22-04-2016 PP4_RS05975 deb5dd6a4e4498d8e5fdd981448ef170 352 SUPERFAMILY SSF142754 30 340 2.88E-110 T 22-04-2016 PP4_RS02545 a2bc5c3e1c67bdbd87b00713b6a67c11 63 PANTHER PTHR10916 1 63 8.6E-27 T 22-04-2016 PP4_RS02545 a2bc5c3e1c67bdbd87b00713b6a67c11 63 TIGRFAM TIGR00012 L29: ribosomal protein uL29 5 60 4.4E-21 T 22-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02545 a2bc5c3e1c67bdbd87b00713b6a67c11 63 SUPERFAMILY SSF46561 1 61 5.36E-21 T 22-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02545 a2bc5c3e1c67bdbd87b00713b6a67c11 63 Pfam PF00831 Ribosomal L29 protein 4 59 1.3E-22 T 22-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02545 a2bc5c3e1c67bdbd87b00713b6a67c11 63 ProSitePatterns PS00579 Ribosomal protein L29 signature. 39 53 - T 22-04-2016 IPR018254 Ribosomal protein L29, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02545 a2bc5c3e1c67bdbd87b00713b6a67c11 63 Gene3D G3DSA:1.10.287.310 1 60 1.3E-26 T 22-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02545 a2bc5c3e1c67bdbd87b00713b6a67c11 63 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 17.658 T 22-04-2016 IPR001854 Ribosomal protein L29 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS21765 018e4467a41245a7fb0c158e0c33ae63 951 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 14 942 0.0 T 22-04-2016 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2 PP4_RS21765 018e4467a41245a7fb0c158e0c33ae63 951 SUPERFAMILY SSF53383 14 436 1.81E-96 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS21765 018e4467a41245a7fb0c158e0c33ae63 951 SUPERFAMILY SSF53383 921 943 1.07E-104 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS21765 018e4467a41245a7fb0c158e0c33ae63 951 SUPERFAMILY SSF53383 472 879 1.07E-104 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS21765 018e4467a41245a7fb0c158e0c33ae63 951 PANTHER PTHR11773 5 950 0.0 T 22-04-2016 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 PP4_RS21765 018e4467a41245a7fb0c158e0c33ae63 951 Pfam PF02347 Glycine cleavage system P-protein 458 731 8.4E-13 T 22-04-2016 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 PP4_RS21765 018e4467a41245a7fb0c158e0c33ae63 951 Pfam PF02347 Glycine cleavage system P-protein 14 438 2.2E-178 T 22-04-2016 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 PP4_RS21765 018e4467a41245a7fb0c158e0c33ae63 951 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 5 948 26.202 T 22-04-2016 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2 PP4_RS21765 018e4467a41245a7fb0c158e0c33ae63 951 PANTHER PTHR11773:SF1 5 950 0.0 T 22-04-2016 PP4_RS21765 018e4467a41245a7fb0c158e0c33ae63 951 Gene3D G3DSA:3.40.640.10 81 302 3.6E-13 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS21765 018e4467a41245a7fb0c158e0c33ae63 951 Gene3D G3DSA:3.40.640.10 499 735 6.6E-40 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS05605 b76195ab3bef4eeea9284879c78c37f7 547 SUPERFAMILY SSF52518 356 535 7.19E-59 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS05605 b76195ab3bef4eeea9284879c78c37f7 547 Gene3D G3DSA:3.40.50.970 352 538 7.5E-58 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS05605 b76195ab3bef4eeea9284879c78c37f7 547 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 379 525 1.9E-39 T 22-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 PP4_RS05605 b76195ab3bef4eeea9284879c78c37f7 547 SUPERFAMILY SSF52467 154 335 2.66E-39 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain PP4_RS05605 b76195ab3bef4eeea9284879c78c37f7 547 Gene3D G3DSA:3.40.50.1220 178 331 3.9E-38 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain PP4_RS05605 b76195ab3bef4eeea9284879c78c37f7 547 SUPERFAMILY SSF52518 3 179 1.59E-47 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS05605 b76195ab3bef4eeea9284879c78c37f7 547 PANTHER PTHR18968:SF129 3 543 9.3E-299 T 22-04-2016 PP4_RS05605 b76195ab3bef4eeea9284879c78c37f7 547 PANTHER PTHR18968 3 543 9.3E-299 T 22-04-2016 PP4_RS05605 b76195ab3bef4eeea9284879c78c37f7 547 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 3 169 2.4E-52 T 22-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 PP4_RS05605 b76195ab3bef4eeea9284879c78c37f7 547 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 416 435 - T 22-04-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 PP4_RS05605 b76195ab3bef4eeea9284879c78c37f7 547 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 187 319 8.7E-32 T 22-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 PP4_RS05605 b76195ab3bef4eeea9284879c78c37f7 547 Gene3D G3DSA:3.40.50.970 3 176 2.0E-65 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS23300 cf1c360e5bba7635d5e215399fc687d5 209 Pfam PF08682 Putative endonuclease, protein of unknown function (DUF1780) 2 209 1.0E-126 T 22-04-2016 IPR014796 Protein of unknown function DUF1780, putative endonuclease PP4_RS23300 cf1c360e5bba7635d5e215399fc687d5 209 SUPERFAMILY SSF52980 1 209 4.02E-123 T 22-04-2016 IPR011335 Restriction endonuclease type II-like PP4_RS23300 cf1c360e5bba7635d5e215399fc687d5 209 Gene3D G3DSA:3.40.1540.10 1 209 3.2E-135 T 22-04-2016 IPR014796 Protein of unknown function DUF1780, putative endonuclease PP4_RS14170 116ebde226f7524afc2392677cbdbacc 540 Pfam PF00005 ABC transporter 304 455 4.7E-31 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS14170 116ebde226f7524afc2392677cbdbacc 540 Pfam PF00005 ABC transporter 27 185 2.9E-29 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS14170 116ebde226f7524afc2392677cbdbacc 540 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 507 532 0.015 T 22-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 PP4_RS14170 116ebde226f7524afc2392677cbdbacc 540 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 236 289 1.2E-8 T 22-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 PP4_RS14170 116ebde226f7524afc2392677cbdbacc 540 Gene3D G3DSA:3.40.50.300 278 529 1.3E-78 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS14170 116ebde226f7524afc2392677cbdbacc 540 Gene3D G3DSA:3.40.50.300 5 258 5.6E-75 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS14170 116ebde226f7524afc2392677cbdbacc 540 PANTHER PTHR24220 8 416 1.2E-134 T 22-04-2016 PP4_RS14170 116ebde226f7524afc2392677cbdbacc 540 SMART SM00382 35 234 8.1E-20 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS14170 116ebde226f7524afc2392677cbdbacc 540 SMART SM00382 313 505 4.0E-14 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS14170 116ebde226f7524afc2392677cbdbacc 540 PANTHER PTHR24220:SF574 8 416 1.2E-134 T 22-04-2016 PP4_RS14170 116ebde226f7524afc2392677cbdbacc 540 SUPERFAMILY SSF52540 6 256 3.51E-65 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS14170 116ebde226f7524afc2392677cbdbacc 540 ProSitePatterns PS00211 ABC transporters family signature. 157 171 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS14170 116ebde226f7524afc2392677cbdbacc 540 ProSitePatterns PS00211 ABC transporters family signature. 428 442 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS14170 116ebde226f7524afc2392677cbdbacc 540 SUPERFAMILY SSF52540 280 527 1.28E-70 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS11795 8bd3dd6483faffa78fba8c582db6d702 284 SUPERFAMILY SSF46785 6 86 3.27E-17 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS11795 8bd3dd6483faffa78fba8c582db6d702 284 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 64 3.5E-16 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS11795 8bd3dd6483faffa78fba8c582db6d702 284 Gene3D G3DSA:3.40.190.10 185 241 4.9E-4 T 22-04-2016 PP4_RS11795 8bd3dd6483faffa78fba8c582db6d702 284 Gene3D G3DSA:1.10.10.10 4 80 7.5E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS11795 8bd3dd6483faffa78fba8c582db6d702 284 PANTHER PTHR30126:SF29 3 281 4.9E-87 T 22-04-2016 PP4_RS11795 8bd3dd6483faffa78fba8c582db6d702 284 Pfam PF03466 LysR substrate binding domain 93 281 1.9E-19 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS11795 8bd3dd6483faffa78fba8c582db6d702 284 PANTHER PTHR30126 3 281 4.9E-87 T 22-04-2016 PP4_RS11795 8bd3dd6483faffa78fba8c582db6d702 284 Gene3D G3DSA:3.40.190.10 92 184 8.8E-11 T 22-04-2016 PP4_RS11795 8bd3dd6483faffa78fba8c582db6d702 284 SUPERFAMILY SSF53850 92 283 3.88E-24 T 22-04-2016 PP4_RS26975 93fe9aef7cb06b8887202428a5859261 240 SUPERFAMILY SSF55666 154 239 3.27E-25 T 22-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 PP4_RS26975 93fe9aef7cb06b8887202428a5859261 240 PANTHER PTHR11953 1 238 5.2E-88 T 22-04-2016 PP4_RS26975 93fe9aef7cb06b8887202428a5859261 240 Gene3D G3DSA:3.30.230.70 8 239 3.0E-35 T 22-04-2016 IPR027408 PNPase/RNase PH domain PP4_RS26975 93fe9aef7cb06b8887202428a5859261 240 SUPERFAMILY SSF54211 2 183 4.5E-46 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PP4_RS26975 93fe9aef7cb06b8887202428a5859261 240 PANTHER PTHR11953:SF0 1 238 5.2E-88 T 22-04-2016 PP4_RS26975 93fe9aef7cb06b8887202428a5859261 240 ProSitePatterns PS01277 Ribonuclease PH signature. 117 129 - T 22-04-2016 IPR018336 Ribonuclease PH, conserved site PP4_RS26975 93fe9aef7cb06b8887202428a5859261 240 Hamap MF_00564 Ribonuclease PH [rph]. 2 239 48.144 T 22-04-2016 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 PP4_RS26975 93fe9aef7cb06b8887202428a5859261 240 Pfam PF03725 3' exoribonuclease family, domain 2 159 226 9.8E-10 T 22-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 PP4_RS26975 93fe9aef7cb06b8887202428a5859261 240 Pfam PF01138 3' exoribonuclease family, domain 1 11 141 3.2E-26 T 22-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 PP4_RS26975 93fe9aef7cb06b8887202428a5859261 240 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 3 238 2.8E-111 T 22-04-2016 IPR002381 Ribonuclease phosphorolytic, bacterial-type GO:0000049|GO:0004549|GO:0008033 PP4_RS01950 825ef5162dc2bfc360c3562e7e6d49a8 236 Gene3D G3DSA:3.30.420.10 36 212 6.8E-36 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PP4_RS01950 825ef5162dc2bfc360c3562e7e6d49a8 236 PANTHER PTHR30231 3 224 3.7E-26 T 22-04-2016 PP4_RS01950 825ef5162dc2bfc360c3562e7e6d49a8 236 Pfam PF00929 Exonuclease 42 200 1.4E-12 T 22-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III PP4_RS01950 825ef5162dc2bfc360c3562e7e6d49a8 236 SMART SM00479 40 210 2.0E-18 T 22-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III PP4_RS01950 825ef5162dc2bfc360c3562e7e6d49a8 236 SUPERFAMILY SSF53098 36 210 1.06E-38 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PP4_RS06800 c437f7e3ddbe2f577aa1da1effff06b5 653 PANTHER PTHR24095:SF178 20 643 0.0 T 22-04-2016 PP4_RS06800 c437f7e3ddbe2f577aa1da1effff06b5 653 SUPERFAMILY SSF56801 12 642 4.71E-180 T 22-04-2016 PP4_RS06800 c437f7e3ddbe2f577aa1da1effff06b5 653 Pfam PF13193 AMP-binding enzyme C-terminal domain 531 609 1.8E-23 T 22-04-2016 IPR025110 AMP-binding enzyme C-terminal domain PP4_RS06800 c437f7e3ddbe2f577aa1da1effff06b5 653 Gene3D G3DSA:2.30.38.10 439 515 3.5E-6 T 22-04-2016 PP4_RS06800 c437f7e3ddbe2f577aa1da1effff06b5 653 Pfam PF00501 AMP-binding enzyme 83 522 2.2E-86 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PP4_RS06800 c437f7e3ddbe2f577aa1da1effff06b5 653 PANTHER PTHR24095 20 643 0.0 T 22-04-2016 PP4_RS06800 c437f7e3ddbe2f577aa1da1effff06b5 653 Gene3D G3DSA:3.40.50.980 267 425 4.1E-28 T 22-04-2016 PP4_RS06800 c437f7e3ddbe2f577aa1da1effff06b5 653 ProSitePatterns PS00455 Putative AMP-binding domain signature. 261 272 - T 22-04-2016 IPR020845 AMP-binding, conserved site PP4_RS06800 c437f7e3ddbe2f577aa1da1effff06b5 653 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 2 645 52.289 T 22-04-2016 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118|Reactome: REACT_13433 PP4_RS06800 c437f7e3ddbe2f577aa1da1effff06b5 653 Gene3D G3DSA:3.40.50.980 80 266 2.2E-41 T 22-04-2016 PP4_RS06800 c437f7e3ddbe2f577aa1da1effff06b5 653 Gene3D G3DSA:3.30.300.30 518 631 4.5E-26 T 22-04-2016 PP4_RS06800 c437f7e3ddbe2f577aa1da1effff06b5 653 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 24 81 1.0E-21 T 22-04-2016 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118 PP4_RS06800 c437f7e3ddbe2f577aa1da1effff06b5 653 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 20 643 0.0 T 22-04-2016 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118|Reactome: REACT_13433 PP4_RS09485 c81adfb039af3b7b1690665ad14148bf 403 Hamap MF_01582 Serine/threonine transporter SstT [sstT]. 1 402 36.379 T 22-04-2016 IPR023025 Serine/threonine transporter SstT GO:0015293|GO:0015826|GO:0032329 PP4_RS09485 c81adfb039af3b7b1690665ad14148bf 403 PANTHER PTHR11958:SF68 3 403 3.4E-239 T 22-04-2016 PP4_RS09485 c81adfb039af3b7b1690665ad14148bf 403 PRINTS PR00173 Glutamate-aspartate symporter signature 285 311 1.2E-14 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS09485 c81adfb039af3b7b1690665ad14148bf 403 PRINTS PR00173 Glutamate-aspartate symporter signature 11 31 1.2E-14 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS09485 c81adfb039af3b7b1690665ad14148bf 403 PRINTS PR00173 Glutamate-aspartate symporter signature 320 339 1.2E-14 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS09485 c81adfb039af3b7b1690665ad14148bf 403 PRINTS PR00173 Glutamate-aspartate symporter signature 183 202 1.2E-14 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS09485 c81adfb039af3b7b1690665ad14148bf 403 PRINTS PR00173 Glutamate-aspartate symporter signature 347 367 1.2E-14 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS09485 c81adfb039af3b7b1690665ad14148bf 403 Pfam PF00375 Sodium:dicarboxylate symporter family 13 392 6.1E-61 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS09485 c81adfb039af3b7b1690665ad14148bf 403 PANTHER PTHR11958 3 403 3.4E-239 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS09485 c81adfb039af3b7b1690665ad14148bf 403 SUPERFAMILY SSF118215 13 395 6.28E-94 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS09485 c81adfb039af3b7b1690665ad14148bf 403 Gene3D G3DSA:1.10.3860.10 7 400 5.2E-82 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS22685 7f00b0e76d742d9ecd1c89f7a2ffa00c 695 Gene3D G3DSA:3.40.1390.20 211 348 1.2E-27 T 22-04-2016 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like PP4_RS22685 7f00b0e76d742d9ecd1c89f7a2ffa00c 695 PANTHER PTHR23406 161 695 3.9E-42 T 22-04-2016 PP4_RS22685 7f00b0e76d742d9ecd1c89f7a2ffa00c 695 SUPERFAMILY SSF75138 213 337 5.1E-24 T 22-04-2016 IPR028979 HPr(Ser) kinase/phosphorylase, N-terminal domain-like PP4_RS22685 7f00b0e76d742d9ecd1c89f7a2ffa00c 695 PIRSF PIRSF006107 1 695 0.0 T 22-04-2016 IPR016475 Phosphate acetyltransferase, bacteria GO:0008959 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 PP4_RS22685 7f00b0e76d742d9ecd1c89f7a2ffa00c 695 SUPERFAMILY SSF53659 374 691 7.67E-79 T 22-04-2016 PP4_RS22685 7f00b0e76d742d9ecd1c89f7a2ffa00c 695 Pfam PF07085 DRTGG domain 217 328 2.5E-29 T 22-04-2016 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 PP4_RS22685 7f00b0e76d742d9ecd1c89f7a2ffa00c 695 Gene3D G3DSA:3.40.50.10750 506 664 1.3E-55 T 22-04-2016 PP4_RS22685 7f00b0e76d742d9ecd1c89f7a2ffa00c 695 TIGRFAM TIGR00651 pta: phosphate acetyltransferase 389 688 1.6E-106 T 22-04-2016 IPR004614 Phosphate acetyltransferase GO:0016407 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 PP4_RS22685 7f00b0e76d742d9ecd1c89f7a2ffa00c 695 Gene3D G3DSA:3.40.50.300 1 210 3.5E-18 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS22685 7f00b0e76d742d9ecd1c89f7a2ffa00c 695 PANTHER PTHR23406:SF3 161 695 3.9E-42 T 22-04-2016 PP4_RS22685 7f00b0e76d742d9ecd1c89f7a2ffa00c 695 SUPERFAMILY SSF52540 1 224 7.59E-33 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS22685 7f00b0e76d742d9ecd1c89f7a2ffa00c 695 Pfam PF01515 Phosphate acetyl/butaryl transferase 374 688 7.6E-105 T 22-04-2016 IPR002505 Phosphate acetyl/butaryl transferase GO:0008152|GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637|UniPathway: UPA00340 PP4_RS22685 7f00b0e76d742d9ecd1c89f7a2ffa00c 695 Pfam PF13500 AAA domain 2 214 2.9E-34 T 22-04-2016 PP4_RS05625 bdd81a5d402186381c0859835bd51200 330 SUPERFAMILY SSF53774 4 321 1.01E-80 T 22-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 PP4_RS05625 bdd81a5d402186381c0859835bd51200 330 PANTHER PTHR11707:SF29 1 320 1.0E-37 T 22-04-2016 PP4_RS05625 bdd81a5d402186381c0859835bd51200 330 PIRSF PIRSF500176 6 329 1.4E-71 T 22-04-2016 PP4_RS05625 bdd81a5d402186381c0859835bd51200 330 SMART SM00870 9 324 5.0E-104 T 22-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 PP4_RS05625 bdd81a5d402186381c0859835bd51200 330 PANTHER PTHR11707 1 320 1.0E-37 T 22-04-2016 PP4_RS05625 bdd81a5d402186381c0859835bd51200 330 Gene3D G3DSA:3.40.50.1170 6 203 7.7E-51 T 22-04-2016 IPR027474 L-asparaginase, N-terminal PP4_RS05625 bdd81a5d402186381c0859835bd51200 330 Gene3D G3DSA:3.40.50.40 213 326 1.3E-21 T 22-04-2016 IPR027473 L-asparaginase, C-terminal domain PP4_RS05625 bdd81a5d402186381c0859835bd51200 330 Pfam PF00710 Asparaginase, N-terminal 10 197 4.4E-47 T 22-04-2016 IPR027474 L-asparaginase, N-terminal PP4_RS05625 bdd81a5d402186381c0859835bd51200 330 PIRSF PIRSF001220 4 329 1.6E-84 T 22-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 PP4_RS05625 bdd81a5d402186381c0859835bd51200 330 PRINTS PR00139 Asparaginase/glutaminase family signature 10 21 2.0E-7 T 22-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 PP4_RS05625 bdd81a5d402186381c0859835bd51200 330 PRINTS PR00139 Asparaginase/glutaminase family signature 259 277 2.0E-7 T 22-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 PP4_RS05625 bdd81a5d402186381c0859835bd51200 330 PRINTS PR00139 Asparaginase/glutaminase family signature 86 104 2.0E-7 T 22-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 PP4_RS04595 c93b5a87d1807463e134ebdc82fe93da 385 Pfam PF13091 PLD-like domain 28 169 4.9E-13 T 22-04-2016 IPR025202 Phospholipase D-like domain PP4_RS04595 c93b5a87d1807463e134ebdc82fe93da 385 Pfam PF13091 PLD-like domain 217 344 3.7E-24 T 22-04-2016 IPR025202 Phospholipase D-like domain PP4_RS04595 c93b5a87d1807463e134ebdc82fe93da 385 PANTHER PTHR21248 5 384 1.9E-98 T 22-04-2016 PP4_RS04595 c93b5a87d1807463e134ebdc82fe93da 385 SUPERFAMILY SSF56024 187 364 1.84E-36 T 22-04-2016 PP4_RS04595 c93b5a87d1807463e134ebdc82fe93da 385 SUPERFAMILY SSF56024 4 173 6.91E-41 T 22-04-2016 PP4_RS04595 c93b5a87d1807463e134ebdc82fe93da 385 Gene3D G3DSA:3.30.870.10 6 177 3.5E-40 T 22-04-2016 PP4_RS04595 c93b5a87d1807463e134ebdc82fe93da 385 SMART SM00155 291 317 11.0 T 22-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 PP4_RS04595 c93b5a87d1807463e134ebdc82fe93da 385 SMART SM00155 109 136 7.1 T 22-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 PP4_RS04595 c93b5a87d1807463e134ebdc82fe93da 385 Gene3D G3DSA:3.30.870.10 210 354 3.0E-30 T 22-04-2016 PP4_RS04595 c93b5a87d1807463e134ebdc82fe93da 385 PANTHER PTHR21248:SF5 5 384 1.9E-98 T 22-04-2016 PP4_RS24575 42b29c41155f45c79b950f893e74407b 155 TIGRFAM TIGR00246 tRNA_RlmH_YbeA: rRNA large subunit m3Psi methyltransferase RlmH 1 155 1.2E-62 T 22-04-2016 IPR016051 Ribosomal RNA large subunit methyltransferase H GO:0005737|GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PP4_RS24575 42b29c41155f45c79b950f893e74407b 155 Gene3D G3DSA:3.40.1280.10 2 155 5.8E-52 T 22-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PP4_RS24575 42b29c41155f45c79b950f893e74407b 155 SUPERFAMILY SSF75217 2 154 7.85E-48 T 22-04-2016 IPR029028 Alpha/beta knot methyltransferases PP4_RS24575 42b29c41155f45c79b950f893e74407b 155 PIRSF PIRSF004505 1 155 2.3E-42 T 22-04-2016 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PP4_RS24575 42b29c41155f45c79b950f893e74407b 155 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 155 27.77 T 22-04-2016 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PP4_RS24575 42b29c41155f45c79b950f893e74407b 155 PANTHER PTHR33603:SF1 1 155 1.5E-64 T 22-04-2016 PP4_RS24575 42b29c41155f45c79b950f893e74407b 155 Pfam PF02590 Predicted SPOUT methyltransferase 2 154 2.5E-47 T 22-04-2016 IPR003742 SPOUT methyltransferase, predicted GO:0005737|GO:0006364|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PP4_RS24575 42b29c41155f45c79b950f893e74407b 155 PANTHER PTHR33603 1 155 1.5E-64 T 22-04-2016 PP4_RS03480 5afd3cbb977385ca3baa7a1119f40f52 508 Gene3D G3DSA:3.40.309.10 272 452 1.4E-65 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PP4_RS03480 5afd3cbb977385ca3baa7a1119f40f52 508 Pfam PF00171 Aldehyde dehydrogenase family 23 487 6.0E-143 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PP4_RS03480 5afd3cbb977385ca3baa7a1119f40f52 508 PANTHER PTHR11699 9 508 0.0 T 22-04-2016 PP4_RS03480 5afd3cbb977385ca3baa7a1119f40f52 508 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 15 491 2.1E-229 T 22-04-2016 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00410+1.2.1.18|KEGG: 00562+1.2.1.18|KEGG: 00640+1.2.1.18+1.2.1.27|MetaCyc: PWY-5642|MetaCyc: PWY-6373 PP4_RS03480 5afd3cbb977385ca3baa7a1119f40f52 508 SUPERFAMILY SSF53720 11 493 1.83E-149 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS03480 5afd3cbb977385ca3baa7a1119f40f52 508 Gene3D G3DSA:3.40.605.10 14 271 9.9E-101 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS03480 5afd3cbb977385ca3baa7a1119f40f52 508 PANTHER PTHR11699:SF181 9 508 0.0 T 22-04-2016 PP4_RS03480 5afd3cbb977385ca3baa7a1119f40f52 508 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 285 296 - T 22-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 PP4_RS25000 72070150c11ce2b97eb36f6a6a2e31cc 433 Pfam PF01926 50S ribosome-binding GTPase 201 319 1.4E-21 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 PP4_RS25000 72070150c11ce2b97eb36f6a6a2e31cc 433 PIRSF PIRSF006809 5 422 2.2E-145 T 22-04-2016 IPR016496 GTPase HflX GO:0005525 PP4_RS25000 72070150c11ce2b97eb36f6a6a2e31cc 433 Pfam PF13167 GTP-binding GTPase N-terminal 28 113 1.4E-30 T 22-04-2016 IPR025121 GTPase HflX, N-terminal PP4_RS25000 72070150c11ce2b97eb36f6a6a2e31cc 433 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 11 361 2.4E-154 T 22-04-2016 IPR016496 GTPase HflX GO:0005525 PP4_RS25000 72070150c11ce2b97eb36f6a6a2e31cc 433 Pfam PF16360 GTP-binding GTPase Middle Region 115 193 2.1E-29 T 22-04-2016 IPR032305 GTP-binding protein, middle domain PP4_RS25000 72070150c11ce2b97eb36f6a6a2e31cc 433 SUPERFAMILY SSF52540 198 368 4.27E-42 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25000 72070150c11ce2b97eb36f6a6a2e31cc 433 SUPERFAMILY SSF54980 375 420 1.65E-6 T 22-04-2016 IPR009022 Elongation factor G, III-V domain PP4_RS25000 72070150c11ce2b97eb36f6a6a2e31cc 433 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 222 240 1.3E-9 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 PP4_RS25000 72070150c11ce2b97eb36f6a6a2e31cc 433 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 201 221 1.3E-9 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 PP4_RS25000 72070150c11ce2b97eb36f6a6a2e31cc 433 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 268 286 1.3E-9 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 PP4_RS25000 72070150c11ce2b97eb36f6a6a2e31cc 433 PANTHER PTHR10229:SF0 2 433 1.6E-172 T 22-04-2016 PP4_RS25000 72070150c11ce2b97eb36f6a6a2e31cc 433 PANTHER PTHR10229 2 433 1.6E-172 T 22-04-2016 IPR016496 GTPase HflX GO:0005525 PP4_RS25000 72070150c11ce2b97eb36f6a6a2e31cc 433 Gene3D G3DSA:3.40.50.300 198 362 4.4E-35 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25000 72070150c11ce2b97eb36f6a6a2e31cc 433 Hamap MF_00900 GTPase HflX [hflX]. 28 391 45.793 T 22-04-2016 IPR016496 GTPase HflX GO:0005525 PP4_RS22625 f1990737aed9b9b91466f923903a5806 276 PANTHER PTHR38684 2 274 4.9E-63 T 22-04-2016 PP4_RS22180 4a64e0a82cdbb2a0e7f73dbf1e8bc708 385 SMART SM00382 30 225 5.1E-19 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS22180 4a64e0a82cdbb2a0e7f73dbf1e8bc708 385 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS22180 4a64e0a82cdbb2a0e7f73dbf1e8bc708 385 Pfam PF00571 CBS domain 260 303 5.4E-6 T 22-04-2016 IPR000644 CBS domain PP4_RS22180 4a64e0a82cdbb2a0e7f73dbf1e8bc708 385 Gene3D G3DSA:3.40.50.300 1 240 1.9E-74 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS22180 4a64e0a82cdbb2a0e7f73dbf1e8bc708 385 PANTHER PTHR24220 3 296 5.1E-157 T 22-04-2016 PP4_RS22180 4a64e0a82cdbb2a0e7f73dbf1e8bc708 385 SUPERFAMILY SSF52540 1 244 4.87E-71 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS22180 4a64e0a82cdbb2a0e7f73dbf1e8bc708 385 Pfam PF00005 ABC transporter 22 167 8.6E-34 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS22180 4a64e0a82cdbb2a0e7f73dbf1e8bc708 385 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 19 364 6.3E-105 T 22-04-2016 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 PP4_RS22180 4a64e0a82cdbb2a0e7f73dbf1e8bc708 385 SUPERFAMILY SSF54631 260 365 2.53E-16 T 22-04-2016 PP4_RS22180 4a64e0a82cdbb2a0e7f73dbf1e8bc708 385 Gene3D G3DSA:3.10.580.10 260 365 2.5E-17 T 22-04-2016 PP4_RS22180 4a64e0a82cdbb2a0e7f73dbf1e8bc708 385 SMART SM00116 319 365 32.0 T 22-04-2016 IPR000644 CBS domain PP4_RS22180 4a64e0a82cdbb2a0e7f73dbf1e8bc708 385 SMART SM00116 260 308 4.3E-4 T 22-04-2016 IPR000644 CBS domain PP4_RS22180 4a64e0a82cdbb2a0e7f73dbf1e8bc708 385 PANTHER PTHR24220:SF350 3 296 5.1E-157 T 22-04-2016 PP4_RS01135 113f4e1e24f349b9d65f0f657559919b 283 SMART SM00382 39 220 1.1E-18 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS01135 113f4e1e24f349b9d65f0f657559919b 283 Gene3D G3DSA:3.40.50.300 6 226 1.5E-66 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS01135 113f4e1e24f349b9d65f0f657559919b 283 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS01135 113f4e1e24f349b9d65f0f657559919b 283 Pfam PF00005 ABC transporter 31 169 1.1E-29 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS01135 113f4e1e24f349b9d65f0f657559919b 283 PANTHER PTHR24220 12 234 2.5E-93 T 22-04-2016 PP4_RS01135 113f4e1e24f349b9d65f0f657559919b 283 PANTHER PTHR24220:SF10 12 234 2.5E-93 T 22-04-2016 PP4_RS01135 113f4e1e24f349b9d65f0f657559919b 283 SUPERFAMILY SSF52540 15 237 2.18E-70 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS05715 3cb2b083a493980918ab2973913b328b 535 SMART SM00388 308 373 3.1E-14 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS05715 3cb2b083a493980918ab2973913b328b 535 Gene3D G3DSA:1.10.287.130 298 359 2.5E-15 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS05715 3cb2b083a493980918ab2973913b328b 535 SMART SM00304 255 307 9.9E-11 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS05715 3cb2b083a493980918ab2973913b328b 535 Pfam PF00672 HAMP domain 236 304 1.4E-12 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS05715 3cb2b083a493980918ab2973913b328b 535 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 423 530 1.4E-20 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS05715 3cb2b083a493980918ab2973913b328b 535 Pfam PF00512 His Kinase A (phospho-acceptor) domain 308 373 1.5E-11 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS05715 3cb2b083a493980918ab2973913b328b 535 PRINTS PR00344 Bacterial sensor protein C-terminal signature 474 484 1.7E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS05715 3cb2b083a493980918ab2973913b328b 535 PRINTS PR00344 Bacterial sensor protein C-terminal signature 456 470 1.7E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS05715 3cb2b083a493980918ab2973913b328b 535 PRINTS PR00344 Bacterial sensor protein C-terminal signature 516 529 1.7E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS05715 3cb2b083a493980918ab2973913b328b 535 PRINTS PR00344 Bacterial sensor protein C-terminal signature 491 509 1.7E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS05715 3cb2b083a493980918ab2973913b328b 535 SUPERFAMILY SSF47384 291 373 3.92E-15 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS05715 3cb2b083a493980918ab2973913b328b 535 SMART SM00387 421 532 2.5E-30 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS05715 3cb2b083a493980918ab2973913b328b 535 PANTHER PTHR24423 249 535 4.1E-61 T 22-04-2016 PP4_RS05715 3cb2b083a493980918ab2973913b328b 535 SUPERFAMILY SSF55874 362 531 9.56E-37 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS05715 3cb2b083a493980918ab2973913b328b 535 Gene3D G3DSA:3.30.565.10 360 533 5.5E-36 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS05715 3cb2b083a493980918ab2973913b328b 535 SUPERFAMILY SSF158472 257 304 6.15E-7 T 22-04-2016 PP4_RS02270 f6b6861ef6240eeba68e8b613fbe84ba 224 PIRSF PIRSF001461 1 224 2.4E-102 T 22-04-2016 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 PP4_RS02270 f6b6861ef6240eeba68e8b613fbe84ba 224 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 6 216 4.9E-98 T 22-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 PP4_RS02270 f6b6861ef6240eeba68e8b613fbe84ba 224 Pfam PF00834 Ribulose-phosphate 3 epimerase family 6 203 1.8E-87 T 22-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 PP4_RS02270 f6b6861ef6240eeba68e8b613fbe84ba 224 PANTHER PTHR11749:SF7 2 222 2.6E-143 T 22-04-2016 PP4_RS02270 f6b6861ef6240eeba68e8b613fbe84ba 224 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 33 47 - T 22-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 PP4_RS02270 f6b6861ef6240eeba68e8b613fbe84ba 224 PANTHER PTHR11749 2 222 2.6E-143 T 22-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 PP4_RS02270 f6b6861ef6240eeba68e8b613fbe84ba 224 ProSitePatterns PS01086 Ribulose-phosphate 3-epimerase family signature 2. 136 158 - T 22-04-2016 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723 PP4_RS02270 f6b6861ef6240eeba68e8b613fbe84ba 224 Gene3D G3DSA:3.20.20.70 2 222 1.8E-93 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS02270 f6b6861ef6240eeba68e8b613fbe84ba 224 SUPERFAMILY SSF51366 4 218 3.77E-75 T 22-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 PP4_RS10645 4c4f689d65f2a036205dd3b896af93d9 264 Pfam PF00378 Enoyl-CoA hydratase/isomerase 13 264 5.9E-56 T 22-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 PP4_RS10645 4c4f689d65f2a036205dd3b896af93d9 264 PANTHER PTHR11941:SF45 1 261 1.6E-82 T 22-04-2016 PP4_RS10645 4c4f689d65f2a036205dd3b896af93d9 264 Gene3D G3DSA:1.10.12.10 206 264 2.3E-16 T 22-04-2016 IPR014748 Crontonase, C-terminal PP4_RS10645 4c4f689d65f2a036205dd3b896af93d9 264 SUPERFAMILY SSF52096 5 263 3.42E-79 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS10645 4c4f689d65f2a036205dd3b896af93d9 264 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 105 125 - T 22-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 PP4_RS10645 4c4f689d65f2a036205dd3b896af93d9 264 Gene3D G3DSA:3.90.226.10 8 204 9.4E-63 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS10645 4c4f689d65f2a036205dd3b896af93d9 264 PANTHER PTHR11941 1 261 1.6E-82 T 22-04-2016 PP4_RS12595 8e22d8c34159d627421cd03f4023b07e 205 Gene3D G3DSA:1.10.10.10 4 71 3.4E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS12595 8e22d8c34159d627421cd03f4023b07e 205 PANTHER PTHR33516 3 204 8.7E-77 T 22-04-2016 PP4_RS12595 8e22d8c34159d627421cd03f4023b07e 205 TIGRFAM TIGR00498 lexA: repressor LexA 4 204 1.4E-53 T 22-04-2016 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 PP4_RS12595 8e22d8c34159d627421cd03f4023b07e 205 Pfam PF00717 Peptidase S24-like 121 188 5.6E-16 T 22-04-2016 IPR019759 Peptidase S24/S26A/S26B PP4_RS12595 8e22d8c34159d627421cd03f4023b07e 205 SUPERFAMILY SSF51306 81 203 2.79E-33 T 22-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C PP4_RS12595 8e22d8c34159d627421cd03f4023b07e 205 Gene3D G3DSA:2.10.109.10 83 204 1.6E-39 T 22-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain PP4_RS12595 8e22d8c34159d627421cd03f4023b07e 205 SUPERFAMILY SSF46785 6 73 2.07E-16 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS12595 8e22d8c34159d627421cd03f4023b07e 205 Hamap MF_00015 LexA repressor [lexA]. 6 205 29.396 T 22-04-2016 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 PP4_RS12595 8e22d8c34159d627421cd03f4023b07e 205 Pfam PF01726 LexA DNA binding domain 4 68 3.4E-17 T 22-04-2016 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 PP4_RS12595 8e22d8c34159d627421cd03f4023b07e 205 PANTHER PTHR33516:SF2 3 204 8.7E-77 T 22-04-2016 PP4_RS12595 8e22d8c34159d627421cd03f4023b07e 205 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 157 169 6.5E-12 T 22-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 PP4_RS12595 8e22d8c34159d627421cd03f4023b07e 205 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 129 140 6.5E-12 T 22-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 PP4_RS12595 8e22d8c34159d627421cd03f4023b07e 205 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 118 128 6.5E-12 T 22-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 PP4_RS20940 8a3a8adbcfdbe75e0f9b199feb26a011 93 PANTHER PTHR37485:SF1 5 90 5.1E-40 T 22-04-2016 PP4_RS20940 8a3a8adbcfdbe75e0f9b199feb26a011 93 Pfam PF04977 Septum formation initiator 14 93 4.1E-24 T 22-04-2016 IPR007060 Septum formation initiator FtsL/DivIC GO:0007049 PP4_RS20940 8a3a8adbcfdbe75e0f9b199feb26a011 93 Hamap MF_00599 Cell division protein FtsB [ftsB]. 1 93 32.969 T 22-04-2016 IPR023081 Cell division protein FtsB PP4_RS20940 8a3a8adbcfdbe75e0f9b199feb26a011 93 PANTHER PTHR37485 5 90 5.1E-40 T 22-04-2016 PP4_RS24480 5a19a97d0f4f2067c715cb44a827ea1d 157 SUPERFAMILY SSF55486 13 151 1.95E-48 T 22-04-2016 PP4_RS24480 5a19a97d0f4f2067c715cb44a827ea1d 157 PANTHER PTHR22881 1 148 1.4E-57 T 22-04-2016 PP4_RS24480 5a19a97d0f4f2067c715cb44a827ea1d 157 Gene3D G3DSA:3.40.390.30 8 150 2.7E-53 T 22-04-2016 IPR023091 Metalloprotease catalytic domain, predicted GO:0004222 PP4_RS24480 5a19a97d0f4f2067c715cb44a827ea1d 157 ProSitePatterns PS01306 Uncharacterized protein family UPF0054 signature. 111 121 - T 22-04-2016 IPR020549 Endoribonuclease YbeY, conserved site PP4_RS24480 5a19a97d0f4f2067c715cb44a827ea1d 157 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 36 142 1.8E-38 T 22-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 PP4_RS24480 5a19a97d0f4f2067c715cb44a827ea1d 157 Pfam PF02130 Uncharacterized protein family UPF0054 17 141 2.6E-40 T 22-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 PP4_RS24480 5a19a97d0f4f2067c715cb44a827ea1d 157 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 3 145 24.606 T 22-04-2016 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 PP4_RS04050 84919385598ff1c8383f3d4be911cc0e 367 Pfam PF05426 Alginate lyase 60 301 8.4E-62 T 22-04-2016 IPR008397 Alginate lyase domain GO:0016829|GO:0042597 KEGG: 00051+4.2.2.3|MetaCyc: PWY-6986 PP4_RS04050 84919385598ff1c8383f3d4be911cc0e 367 Hamap MF_00557 Alginate lyase [algL]. 3 367 62.39 T 22-04-2016 IPR022859 Alginate lyase GO:0042122|GO:0042597|GO:0045135 KEGG: 00051+4.2.2.3|MetaCyc: PWY-6986 PP4_RS04050 84919385598ff1c8383f3d4be911cc0e 367 SUPERFAMILY SSF48230 19 359 1.46E-63 T 22-04-2016 IPR008929 Chondroitin AC/alginate lyase PP4_RS04050 84919385598ff1c8383f3d4be911cc0e 367 Gene3D G3DSA:1.50.10.110 12 361 3.1E-102 T 22-04-2016 IPR008397 Alginate lyase domain GO:0016829|GO:0042597 KEGG: 00051+4.2.2.3|MetaCyc: PWY-6986 PP4_RS12110 90489acbf921f103d44b8e2c7cb2395e 636 PANTHER PTHR32071:SF5 329 634 2.1E-122 T 22-04-2016 PP4_RS12110 90489acbf921f103d44b8e2c7cb2395e 636 Pfam PF00158 Sigma-54 interaction domain 339 504 9.9E-63 T 22-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 PP4_RS12110 90489acbf921f103d44b8e2c7cb2395e 636 SMART SM00382 357 501 4.5E-11 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS12110 90489acbf921f103d44b8e2c7cb2395e 636 Gene3D G3DSA:3.40.50.300 337 510 2.4E-52 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS12110 90489acbf921f103d44b8e2c7cb2395e 636 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 424 439 - T 22-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PP4_RS12110 90489acbf921f103d44b8e2c7cb2395e 636 Gene3D G3DSA:1.10.10.60 593 633 4.9E-17 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS12110 90489acbf921f103d44b8e2c7cb2395e 636 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 361 374 - T 22-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 PP4_RS12110 90489acbf921f103d44b8e2c7cb2395e 636 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 600 617 1.1E-8 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS12110 90489acbf921f103d44b8e2c7cb2395e 636 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 617 636 1.1E-8 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS12110 90489acbf921f103d44b8e2c7cb2395e 636 SUPERFAMILY SSF52540 341 578 2.76E-58 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS12110 90489acbf921f103d44b8e2c7cb2395e 636 Pfam PF02954 Bacterial regulatory protein, Fis family 594 634 9.2E-14 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS12110 90489acbf921f103d44b8e2c7cb2395e 636 SUPERFAMILY SSF55785 234 305 2.69E-8 T 22-04-2016 IPR000014 PAS domain PP4_RS12110 90489acbf921f103d44b8e2c7cb2395e 636 Gene3D G3DSA:1.10.8.60 512 580 4.4E-10 T 22-04-2016 PP4_RS12110 90489acbf921f103d44b8e2c7cb2395e 636 SUPERFAMILY SSF46689 546 634 1.61E-14 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS12110 90489acbf921f103d44b8e2c7cb2395e 636 Gene3D G3DSA:3.30.450.20 234 306 5.4E-8 T 22-04-2016 PP4_RS12110 90489acbf921f103d44b8e2c7cb2395e 636 SMART SM00091 228 294 1.4E-4 T 22-04-2016 IPR000014 PAS domain PP4_RS12110 90489acbf921f103d44b8e2c7cb2395e 636 PANTHER PTHR32071 329 634 2.1E-122 T 22-04-2016 PP4_RS06695 5992b851416ed3597d67a3f669427da4 353 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 314 330 1.6E-5 T 22-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PP4_RS06695 5992b851416ed3597d67a3f669427da4 353 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 299 314 1.6E-5 T 22-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PP4_RS06695 5992b851416ed3597d67a3f669427da4 353 Gene3D G3DSA:1.10.10.60 284 332 2.9E-15 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS06695 5992b851416ed3597d67a3f669427da4 353 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 22 205 2.3E-49 T 22-04-2016 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal PP4_RS06695 5992b851416ed3597d67a3f669427da4 353 PANTHER PTHR11019:SF52 219 338 2.6E-32 T 22-04-2016 PP4_RS06695 5992b851416ed3597d67a3f669427da4 353 PANTHER PTHR11019 219 338 2.6E-32 T 22-04-2016 PP4_RS06695 5992b851416ed3597d67a3f669427da4 353 Pfam PF12833 Helix-turn-helix domain 254 332 3.6E-22 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS06695 5992b851416ed3597d67a3f669427da4 353 SUPERFAMILY SSF46689 284 333 2.73E-13 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS06695 5992b851416ed3597d67a3f669427da4 353 SMART SM00342 248 330 1.6E-29 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS16920 843f11a2958969181f6e88fedc4b8a5b 180 Pfam PF13280 WYL domain 95 171 1.6E-7 T 22-04-2016 IPR026881 WYL domain PP4_RS02030 e89331c1e931eb306f5f8b6977a853de 427 Gene3D G3DSA:3.30.70.270 244 420 3.1E-45 T 22-04-2016 PP4_RS02030 e89331c1e931eb306f5f8b6977a853de 427 Pfam PF00990 Diguanylate cyclase, GGDEF domain 242 345 1.0E-21 T 22-04-2016 IPR000160 GGDEF domain PP4_RS02030 e89331c1e931eb306f5f8b6977a853de 427 Pfam PF00990 Diguanylate cyclase, GGDEF domain 368 410 7.7E-7 T 22-04-2016 IPR000160 GGDEF domain PP4_RS02030 e89331c1e931eb306f5f8b6977a853de 427 PANTHER PTHR10799:SF750 120 348 1.7E-15 T 22-04-2016 PP4_RS02030 e89331c1e931eb306f5f8b6977a853de 427 PANTHER PTHR10799:SF750 374 413 1.7E-15 T 22-04-2016 PP4_RS02030 e89331c1e931eb306f5f8b6977a853de 427 SMART SM00267 232 415 8.5E-44 T 22-04-2016 IPR000160 GGDEF domain PP4_RS02030 e89331c1e931eb306f5f8b6977a853de 427 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 240 414 2.4E-33 T 22-04-2016 IPR000160 GGDEF domain PP4_RS02030 e89331c1e931eb306f5f8b6977a853de 427 PANTHER PTHR10799 374 413 1.7E-15 T 22-04-2016 PP4_RS02030 e89331c1e931eb306f5f8b6977a853de 427 PANTHER PTHR10799 120 348 1.7E-15 T 22-04-2016 PP4_RS02030 e89331c1e931eb306f5f8b6977a853de 427 SUPERFAMILY SSF55073 247 416 2.2E-38 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS18770 ef2a951b7b8d74eef0e819886cac90bf 538 PANTHER PTHR32089:SF64 183 531 5.1E-126 T 22-04-2016 PP4_RS18770 ef2a951b7b8d74eef0e819886cac90bf 538 PANTHER PTHR32089:SF64 115 160 5.1E-126 T 22-04-2016 PP4_RS18770 ef2a951b7b8d74eef0e819886cac90bf 538 Gene3D G3DSA:1.10.287.950 291 508 3.5E-58 T 22-04-2016 PP4_RS18770 ef2a951b7b8d74eef0e819886cac90bf 538 SMART SM00304 209 261 5.2E-8 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS18770 ef2a951b7b8d74eef0e819886cac90bf 538 Pfam PF00672 HAMP domain 189 254 7.7E-13 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS18770 ef2a951b7b8d74eef0e819886cac90bf 538 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 338 534 1.2E-47 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS18770 ef2a951b7b8d74eef0e819886cac90bf 538 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 403 432 5.2E-8 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS18770 ef2a951b7b8d74eef0e819886cac90bf 538 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 290 319 5.2E-8 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS18770 ef2a951b7b8d74eef0e819886cac90bf 538 PANTHER PTHR32089 183 531 5.1E-126 T 22-04-2016 PP4_RS18770 ef2a951b7b8d74eef0e819886cac90bf 538 PANTHER PTHR32089 115 160 5.1E-126 T 22-04-2016 PP4_RS18770 ef2a951b7b8d74eef0e819886cac90bf 538 SUPERFAMILY SSF58104 232 537 2.49E-75 T 22-04-2016 PP4_RS18770 ef2a951b7b8d74eef0e819886cac90bf 538 SMART SM00283 276 537 1.6E-80 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS26475 d0c80262db731d1e50e55d856eefb98a 453 Gene3D G3DSA:3.90.1150.10 8 69 3.3E-50 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS26475 d0c80262db731d1e50e55d856eefb98a 453 Gene3D G3DSA:3.90.1150.10 345 448 3.3E-50 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS26475 d0c80262db731d1e50e55d856eefb98a 453 Pfam PF00202 Aminotransferase class-III 34 445 1.1E-106 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS26475 d0c80262db731d1e50e55d856eefb98a 453 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 257 294 - T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS26475 d0c80262db731d1e50e55d856eefb98a 453 PANTHER PTHR11986 34 453 2.1E-164 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS26475 d0c80262db731d1e50e55d856eefb98a 453 Gene3D G3DSA:3.40.640.10 70 343 1.0E-81 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS26475 d0c80262db731d1e50e55d856eefb98a 453 PANTHER PTHR11986:SF81 34 453 2.1E-164 T 22-04-2016 PP4_RS26475 d0c80262db731d1e50e55d856eefb98a 453 SUPERFAMILY SSF53383 10 446 5.01E-125 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS19560 e2bf9c1d476a7424a5abe464f8ec070b 154 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 121 136 3.4E-25 T 22-04-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 PP4_RS19560 e2bf9c1d476a7424a5abe464f8ec070b 154 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 3 20 3.4E-25 T 22-04-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 PP4_RS19560 e2bf9c1d476a7424a5abe464f8ec070b 154 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 80 95 3.4E-25 T 22-04-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 PP4_RS19560 e2bf9c1d476a7424a5abe464f8ec070b 154 PRINTS PR00719 LMW phosphotyrosine protein phosphatase signature 46 62 3.4E-25 T 22-04-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 PP4_RS19560 e2bf9c1d476a7424a5abe464f8ec070b 154 SMART SM00226 1 149 5.5E-56 T 22-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily PP4_RS19560 e2bf9c1d476a7424a5abe464f8ec070b 154 SUPERFAMILY SSF52788 1 147 2.09E-50 T 22-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily PP4_RS19560 e2bf9c1d476a7424a5abe464f8ec070b 154 PANTHER PTHR11717 1 151 1.9E-56 T 22-04-2016 PP4_RS19560 e2bf9c1d476a7424a5abe464f8ec070b 154 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 3 146 1.1E-41 T 22-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily PP4_RS19560 e2bf9c1d476a7424a5abe464f8ec070b 154 Gene3D G3DSA:3.40.50.270 1 152 9.5E-53 T 22-04-2016 PP4_RS19560 e2bf9c1d476a7424a5abe464f8ec070b 154 PANTHER PTHR11717:SF7 1 151 1.9E-56 T 22-04-2016 IPR017867 Protein-tyrosine phosphatase, low molecular weight GO:0004725|GO:0006470 PP4_RS23835 452fa847bf3b1b86352515c43d478637 335 Pfam PF02615 Malate/L-lactate dehydrogenase 11 328 6.1E-70 T 22-04-2016 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS23835 452fa847bf3b1b86352515c43d478637 335 SUPERFAMILY SSF89733 9 332 9.16E-74 T 22-04-2016 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS23835 452fa847bf3b1b86352515c43d478637 335 Gene3D G3DSA:3.30.1370.60 79 279 2.6E-56 T 22-04-2016 PP4_RS23835 452fa847bf3b1b86352515c43d478637 335 Gene3D G3DSA:1.10.1530.10 9 78 1.6E-11 T 22-04-2016 PP4_RS23835 452fa847bf3b1b86352515c43d478637 335 PANTHER PTHR11091 9 331 3.8E-48 T 22-04-2016 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS02430 385178ab63cf0da954cb743efa9820ac 397 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 147 1.1E-14 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 PP4_RS02430 385178ab63cf0da954cb743efa9820ac 397 SUPERFAMILY SSF52540 11 222 1.57E-57 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS02430 385178ab63cf0da954cb743efa9820ac 397 PANTHER PTHR23115:SF151 1 396 7.5E-254 T 22-04-2016 PP4_RS02430 385178ab63cf0da954cb743efa9820ac 397 Gene3D G3DSA:2.40.30.10 303 396 7.3E-47 T 22-04-2016 PP4_RS02430 385178ab63cf0da954cb743efa9820ac 397 Pfam PF00009 Elongation factor Tu GTP binding domain 11 204 6.5E-56 T 22-04-2016 PP4_RS02430 385178ab63cf0da954cb743efa9820ac 397 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 22-04-2016 IPR031157 Tr-type G domain, conserved site PP4_RS02430 385178ab63cf0da954cb743efa9820ac 397 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.6E-24 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS02430 385178ab63cf0da954cb743efa9820ac 397 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.6E-24 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS02430 385178ab63cf0da954cb743efa9820ac 397 PRINTS PR00315 GTP-binding elongation factor signature 14 27 1.6E-24 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS02430 385178ab63cf0da954cb743efa9820ac 397 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.6E-24 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS02430 385178ab63cf0da954cb743efa9820ac 397 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.6E-24 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS02430 385178ab63cf0da954cb743efa9820ac 397 Gene3D G3DSA:3.40.50.300 3 211 3.8E-65 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS02430 385178ab63cf0da954cb743efa9820ac 397 SUPERFAMILY SSF50447 208 304 9.43E-29 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain PP4_RS02430 385178ab63cf0da954cb743efa9820ac 397 PANTHER PTHR23115 1 396 7.5E-254 T 22-04-2016 PP4_RS02430 385178ab63cf0da954cb743efa9820ac 397 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 397 58.428 T 22-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 PP4_RS02430 385178ab63cf0da954cb743efa9820ac 397 Pfam PF03144 Elongation factor Tu domain 2 228 296 2.2E-15 T 22-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 PP4_RS02430 385178ab63cf0da954cb743efa9820ac 397 SUPERFAMILY SSF50465 301 396 2.3E-35 T 22-04-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal PP4_RS02430 385178ab63cf0da954cb743efa9820ac 397 Pfam PF03143 Elongation factor Tu C-terminal domain 301 395 3.7E-34 T 22-04-2016 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal PP4_RS02430 385178ab63cf0da954cb743efa9820ac 397 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 397 4.3E-220 T 22-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 PP4_RS02430 385178ab63cf0da954cb743efa9820ac 397 Gene3D G3DSA:2.40.30.10 212 301 1.1E-35 T 22-04-2016 PP4_RS10180 8531bd67c07024f3ffd15dad241107ae 249 PANTHER PTHR24220 16 234 2.0E-55 T 22-04-2016 PP4_RS10180 8531bd67c07024f3ffd15dad241107ae 249 SUPERFAMILY SSF52540 11 221 9.35E-45 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS10180 8531bd67c07024f3ffd15dad241107ae 249 Gene3D G3DSA:3.40.50.300 13 231 9.8E-45 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS10180 8531bd67c07024f3ffd15dad241107ae 249 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS10180 8531bd67c07024f3ffd15dad241107ae 249 PANTHER PTHR24220:SF218 16 234 2.0E-55 T 22-04-2016 PP4_RS10180 8531bd67c07024f3ffd15dad241107ae 249 SMART SM00382 39 220 2.3E-5 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS10180 8531bd67c07024f3ffd15dad241107ae 249 Pfam PF00005 ABC transporter 30 170 7.1E-25 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS02355 d06bb55a0e9b1ce6b6e17d1e078c0c1d 116 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 97 114 - T 22-04-2016 IPR017870 FeS cluster insertion, C-terminal, conserved site PP4_RS02355 d06bb55a0e9b1ce6b6e17d1e078c0c1d 116 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 12 115 5.1E-38 T 22-04-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 PP4_RS02355 d06bb55a0e9b1ce6b6e17d1e078c0c1d 116 PANTHER PTHR10072 11 116 3.8E-47 T 22-04-2016 PP4_RS02355 d06bb55a0e9b1ce6b6e17d1e078c0c1d 116 Gene3D G3DSA:2.60.300.12 8 102 3.8E-33 T 22-04-2016 IPR000361 FeS cluster biogenesis PP4_RS02355 d06bb55a0e9b1ce6b6e17d1e078c0c1d 116 SUPERFAMILY SSF89360 5 102 4.9E-31 T 22-04-2016 IPR000361 FeS cluster biogenesis PP4_RS02355 d06bb55a0e9b1ce6b6e17d1e078c0c1d 116 Hamap MF_01380 Iron-sulfur cluster insertion protein ErpA [erpA]. 1 116 36.732 T 22-04-2016 IPR023063 FeS cluster insertion protein ErpA GO:0016226 PP4_RS02355 d06bb55a0e9b1ce6b6e17d1e078c0c1d 116 Pfam PF01521 Iron-sulphur cluster biosynthesis 11 111 7.4E-19 T 22-04-2016 IPR000361 FeS cluster biogenesis PP4_RS25520 7d3fdafe346da552f19cb631dbc42ad4 141 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 5 141 25.099 T 22-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 PP4_RS25520 7d3fdafe346da552f19cb631dbc42ad4 141 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 8 138 7.8E-45 T 22-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 PP4_RS25520 7d3fdafe346da552f19cb631dbc42ad4 141 PANTHER PTHR33317 7 138 1.0E-41 T 22-04-2016 PP4_RS25520 7d3fdafe346da552f19cb631dbc42ad4 141 SUPERFAMILY SSF53098 6 138 3.34E-40 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PP4_RS25520 7d3fdafe346da552f19cb631dbc42ad4 141 Pfam PF03652 Holliday junction resolvase 7 138 2.5E-42 T 22-04-2016 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 PP4_RS25520 7d3fdafe346da552f19cb631dbc42ad4 141 SMART SM00732 5 105 2.4E-40 T 22-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 PP4_RS25520 7d3fdafe346da552f19cb631dbc42ad4 141 Gene3D G3DSA:3.30.420.140 6 139 1.1E-45 T 22-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 PP4_RS03445 e992b88b66892d91f8f7cc49c26a325b 1224 Gene3D G3DSA:3.40.50.300 750 889 6.6E-64 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03445 e992b88b66892d91f8f7cc49c26a325b 1224 Gene3D G3DSA:3.40.50.300 460 601 6.6E-64 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03445 e992b88b66892d91f8f7cc49c26a325b 1224 Gene3D G3DSA:1.10.486.10 605 749 2.0E-51 T 22-04-2016 PP4_RS03445 e992b88b66892d91f8f7cc49c26a325b 1224 Pfam PF00580 UvrD/REP helicase N-terminal domain 13 443 3.2E-55 T 22-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 PP4_RS03445 e992b88b66892d91f8f7cc49c26a325b 1224 Hamap MF_01485 RecBCD enzyme subunit RecB [recB]. 4 1208 14.887 T 22-04-2016 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 PP4_RS03445 e992b88b66892d91f8f7cc49c26a325b 1224 PANTHER PTHR11070 119 216 0.0 T 22-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 PP4_RS03445 e992b88b66892d91f8f7cc49c26a325b 1224 PANTHER PTHR11070 306 508 0.0 T 22-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 PP4_RS03445 e992b88b66892d91f8f7cc49c26a325b 1224 PANTHER PTHR11070 1 87 0.0 T 22-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 PP4_RS03445 e992b88b66892d91f8f7cc49c26a325b 1224 PANTHER PTHR11070 818 1203 0.0 T 22-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 PP4_RS03445 e992b88b66892d91f8f7cc49c26a325b 1224 PANTHER PTHR11070 533 797 0.0 T 22-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 PP4_RS03445 e992b88b66892d91f8f7cc49c26a325b 1224 Gene3D G3DSA:3.90.320.10 914 1210 1.6E-83 T 22-04-2016 IPR011604 Exonuclease, phage-type/RecB, C-terminal GO:0003677|GO:0004518 PP4_RS03445 e992b88b66892d91f8f7cc49c26a325b 1224 TIGRFAM TIGR00609 recB: exodeoxyribonuclease V, beta subunit 9 1207 0.0 T 22-04-2016 IPR004586 RecBCD enzyme subunit RecB GO:0005524|GO:0006281|GO:0008854 PP4_RS03445 e992b88b66892d91f8f7cc49c26a325b 1224 Gene3D G3DSA:1.10.3170.10 156 355 2.6E-57 T 22-04-2016 PP4_RS03445 e992b88b66892d91f8f7cc49c26a325b 1224 Gene3D G3DSA:3.40.50.300 8 80 1.0E-48 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03445 e992b88b66892d91f8f7cc49c26a325b 1224 Gene3D G3DSA:3.40.50.300 356 459 1.0E-48 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03445 e992b88b66892d91f8f7cc49c26a325b 1224 Gene3D G3DSA:3.40.50.300 121 150 1.0E-48 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03445 e992b88b66892d91f8f7cc49c26a325b 1224 PANTHER PTHR11070:SF23 119 216 0.0 T 22-04-2016 PP4_RS03445 e992b88b66892d91f8f7cc49c26a325b 1224 PANTHER PTHR11070:SF23 306 508 0.0 T 22-04-2016 PP4_RS03445 e992b88b66892d91f8f7cc49c26a325b 1224 PANTHER PTHR11070:SF23 1 87 0.0 T 22-04-2016 PP4_RS03445 e992b88b66892d91f8f7cc49c26a325b 1224 PANTHER PTHR11070:SF23 818 1203 0.0 T 22-04-2016 PP4_RS03445 e992b88b66892d91f8f7cc49c26a325b 1224 PANTHER PTHR11070:SF23 533 797 0.0 T 22-04-2016 PP4_RS03445 e992b88b66892d91f8f7cc49c26a325b 1224 Pfam PF13361 UvrD-like helicase C-terminal domain 573 838 3.4E-18 T 22-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 PP4_RS03445 e992b88b66892d91f8f7cc49c26a325b 1224 SUPERFAMILY SSF52980 923 1209 1.02E-69 T 22-04-2016 IPR011335 Restriction endonuclease type II-like PP4_RS03445 e992b88b66892d91f8f7cc49c26a325b 1224 SUPERFAMILY SSF52540 331 480 1.5E-106 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03445 e992b88b66892d91f8f7cc49c26a325b 1224 SUPERFAMILY SSF52540 9 78 1.5E-106 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03445 e992b88b66892d91f8f7cc49c26a325b 1224 SUPERFAMILY SSF52540 507 788 1.5E-106 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03445 e992b88b66892d91f8f7cc49c26a325b 1224 SUPERFAMILY SSF52540 819 844 1.5E-106 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03445 e992b88b66892d91f8f7cc49c26a325b 1224 SUPERFAMILY SSF52540 119 217 1.5E-106 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS07415 f2990824b4092d019a1ed0c4d89bc474 262 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 1 259 5.6E-37 T 22-04-2016 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 KEGG: 00520+5.1.-.-|KEGG: 00960+5.1.-.- PP4_RS07415 f2990824b4092d019a1ed0c4d89bc474 262 SUPERFAMILY SSF54506 1 262 1.04E-78 T 22-04-2016 PP4_RS07415 f2990824b4092d019a1ed0c4d89bc474 262 Gene3D G3DSA:3.10.310.10 124 250 2.1E-38 T 22-04-2016 PP4_RS07415 f2990824b4092d019a1ed0c4d89bc474 262 PANTHER PTHR13774:SF17 1 262 1.5E-98 T 22-04-2016 PP4_RS07415 f2990824b4092d019a1ed0c4d89bc474 262 Gene3D G3DSA:3.10.310.10 1 123 2.4E-46 T 22-04-2016 PP4_RS07415 f2990824b4092d019a1ed0c4d89bc474 262 Pfam PF02567 Phenazine biosynthesis-like protein 8 256 5.3E-55 T 22-04-2016 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 KEGG: 00520+5.1.-.-|KEGG: 00960+5.1.-.- PP4_RS07415 f2990824b4092d019a1ed0c4d89bc474 262 PIRSF PIRSF016184 1 262 9.3E-54 T 22-04-2016 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 KEGG: 00520+5.1.-.-|KEGG: 00960+5.1.-.- PP4_RS07415 f2990824b4092d019a1ed0c4d89bc474 262 PANTHER PTHR13774 1 262 1.5E-98 T 22-04-2016 PP4_RS13845 fab148511543b73af684b8339b161f0b 300 PANTHER PTHR30537:SF23 1 293 3.4E-89 T 22-04-2016 PP4_RS13845 fab148511543b73af684b8339b161f0b 300 Pfam PF03466 LysR substrate binding domain 88 293 2.6E-39 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS13845 fab148511543b73af684b8339b161f0b 300 SUPERFAMILY SSF46785 1 112 7.03E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS13845 fab148511543b73af684b8339b161f0b 300 Gene3D G3DSA:3.40.190.10 178 259 3.3E-10 T 22-04-2016 PP4_RS13845 fab148511543b73af684b8339b161f0b 300 Gene3D G3DSA:3.40.190.10 92 177 1.2E-20 T 22-04-2016 PP4_RS13845 fab148511543b73af684b8339b161f0b 300 PANTHER PTHR30537 1 293 3.4E-89 T 22-04-2016 PP4_RS13845 fab148511543b73af684b8339b161f0b 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 2.3E-16 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS13845 fab148511543b73af684b8339b161f0b 300 SUPERFAMILY SSF53850 89 294 3.08E-41 T 22-04-2016 PP4_RS13845 fab148511543b73af684b8339b161f0b 300 Gene3D G3DSA:1.10.10.10 1 86 1.2E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS13395 6d1acabe94f2b657c247b75a50d1db77 299 PANTHER PTHR30346 7 299 1.8E-80 T 22-04-2016 PP4_RS13395 6d1acabe94f2b657c247b75a50d1db77 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 4.2E-9 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS13395 6d1acabe94f2b657c247b75a50d1db77 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 4.2E-9 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS13395 6d1acabe94f2b657c247b75a50d1db77 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 4.2E-9 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS13395 6d1acabe94f2b657c247b75a50d1db77 299 Gene3D G3DSA:1.10.10.10 7 87 9.3E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS13395 6d1acabe94f2b657c247b75a50d1db77 299 Gene3D G3DSA:3.40.190.10 92 179 1.8E-26 T 22-04-2016 PP4_RS13395 6d1acabe94f2b657c247b75a50d1db77 299 Gene3D G3DSA:3.40.190.10 180 268 1.0E-28 T 22-04-2016 PP4_RS13395 6d1acabe94f2b657c247b75a50d1db77 299 PANTHER PTHR30346:SF0 7 299 1.8E-80 T 22-04-2016 PP4_RS13395 6d1acabe94f2b657c247b75a50d1db77 299 SUPERFAMILY SSF46785 7 115 2.26E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS13395 6d1acabe94f2b657c247b75a50d1db77 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 3.0E-20 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS13395 6d1acabe94f2b657c247b75a50d1db77 299 SUPERFAMILY SSF53850 93 298 2.12E-40 T 22-04-2016 PP4_RS13395 6d1acabe94f2b657c247b75a50d1db77 299 Pfam PF03466 LysR substrate binding domain 92 297 1.6E-41 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS25530 53f80fd2287fe89e640545fd4d213850 334 PANTHER PTHR11405 1 329 4.1E-131 T 22-04-2016 PP4_RS25530 53f80fd2287fe89e640545fd4d213850 334 SUPERFAMILY SSF53671 18 321 1.06E-94 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PP4_RS25530 53f80fd2287fe89e640545fd4d213850 334 Gene3D G3DSA:3.40.50.1370 163 298 4.1E-46 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PP4_RS25530 53f80fd2287fe89e640545fd4d213850 334 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 65 72 - T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PP4_RS25530 53f80fd2287fe89e640545fd4d213850 334 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 19 319 1.7E-88 T 22-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 PP4_RS25530 53f80fd2287fe89e640545fd4d213850 334 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 19 163 9.7E-38 T 22-04-2016 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 PP4_RS25530 53f80fd2287fe89e640545fd4d213850 334 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 171 316 6.0E-23 T 22-04-2016 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 PP4_RS25530 53f80fd2287fe89e640545fd4d213850 334 PANTHER PTHR11405:SF16 1 329 4.1E-131 T 22-04-2016 PP4_RS25530 53f80fd2287fe89e640545fd4d213850 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 284 307 3.3E-18 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PP4_RS25530 53f80fd2287fe89e640545fd4d213850 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 272 281 3.3E-18 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PP4_RS25530 53f80fd2287fe89e640545fd4d213850 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 65 84 3.3E-18 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PP4_RS25530 53f80fd2287fe89e640545fd4d213850 334 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 151 162 3.3E-18 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PP4_RS25530 53f80fd2287fe89e640545fd4d213850 334 Gene3D G3DSA:3.40.50.1370 19 162 1.1E-50 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PP4_RS25530 53f80fd2287fe89e640545fd4d213850 334 PRINTS PR00101 Aspartate carbamoyltransferase signature 300 314 2.9E-31 T 22-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 PP4_RS25530 53f80fd2287fe89e640545fd4d213850 334 PRINTS PR00101 Aspartate carbamoyltransferase signature 150 167 2.9E-31 T 22-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 PP4_RS25530 53f80fd2287fe89e640545fd4d213850 334 PRINTS PR00101 Aspartate carbamoyltransferase signature 93 102 2.9E-31 T 22-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 PP4_RS25530 53f80fd2287fe89e640545fd4d213850 334 PRINTS PR00101 Aspartate carbamoyltransferase signature 235 244 2.9E-31 T 22-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 PP4_RS25530 53f80fd2287fe89e640545fd4d213850 334 PRINTS PR00101 Aspartate carbamoyltransferase signature 55 77 2.9E-31 T 22-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 PP4_RS25530 53f80fd2287fe89e640545fd4d213850 334 PRINTS PR00101 Aspartate carbamoyltransferase signature 276 281 2.9E-31 T 22-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 PP4_RS25530 53f80fd2287fe89e640545fd4d213850 334 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 18 321 41.485 T 22-04-2016 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|UniPathway: UPA00070 PP4_RS01115 22db80ff6060ce6a77c6332f290cbd64 574 PANTHER PTHR11632:SF6 1 569 2.6E-227 T 22-04-2016 PP4_RS01115 22db80ff6060ce6a77c6332f290cbd64 574 Pfam PF00890 FAD binding domain 9 378 2.1E-37 T 22-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain PP4_RS01115 22db80ff6060ce6a77c6332f290cbd64 574 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 355 377 1.0E-10 T 22-04-2016 PP4_RS01115 22db80ff6060ce6a77c6332f290cbd64 574 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 10 29 1.0E-10 T 22-04-2016 PP4_RS01115 22db80ff6060ce6a77c6332f290cbd64 574 Gene3D G3DSA:3.50.50.60 356 414 3.8E-69 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS01115 22db80ff6060ce6a77c6332f290cbd64 574 Gene3D G3DSA:3.50.50.60 4 277 3.8E-69 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS01115 22db80ff6060ce6a77c6332f290cbd64 574 Gene3D G3DSA:1.20.58.100 415 523 1.2E-39 T 22-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 PP4_RS01115 22db80ff6060ce6a77c6332f290cbd64 574 SUPERFAMILY SSF46977 425 552 2.09E-37 T 22-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 PP4_RS01115 22db80ff6060ce6a77c6332f290cbd64 574 PIRSF PIRSF000171 1 561 2.7E-234 T 22-04-2016 IPR030664 Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit PP4_RS01115 22db80ff6060ce6a77c6332f290cbd64 574 PANTHER PTHR11632 1 569 2.6E-227 T 22-04-2016 PP4_RS01115 22db80ff6060ce6a77c6332f290cbd64 574 Pfam PF02910 Fumarate reductase flavoprotein C-term 440 537 1.1E-11 T 22-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 PP4_RS01115 22db80ff6060ce6a77c6332f290cbd64 574 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 370 377 3.4E-6 T 22-04-2016 PP4_RS01115 22db80ff6060ce6a77c6332f290cbd64 574 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 9 31 3.4E-6 T 22-04-2016 PP4_RS01115 22db80ff6060ce6a77c6332f290cbd64 574 SUPERFAMILY SSF51905 4 260 1.33E-62 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS01115 22db80ff6060ce6a77c6332f290cbd64 574 SUPERFAMILY SSF51905 356 407 1.33E-62 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS02575 6697bc52435ab514bcc803019615b316 130 Pfam PF00410 Ribosomal protein S8 5 130 1.2E-47 T 22-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 PP4_RS02575 6697bc52435ab514bcc803019615b316 130 SUPERFAMILY SSF56047 2 130 1.7E-44 T 22-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 PP4_RS02575 6697bc52435ab514bcc803019615b316 130 PANTHER PTHR11758 1 130 7.3E-59 T 22-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 PP4_RS02575 6697bc52435ab514bcc803019615b316 130 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 130 30.976 T 22-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 PP4_RS02575 6697bc52435ab514bcc803019615b316 130 ProSitePatterns PS00053 Ribosomal protein S8 signature. 100 117 - T 22-04-2016 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 PP4_RS02575 6697bc52435ab514bcc803019615b316 130 Gene3D G3DSA:3.30.1370.30 2 71 1.4E-27 T 22-04-2016 PP4_RS02575 6697bc52435ab514bcc803019615b316 130 Gene3D G3DSA:3.30.1490.10 74 130 7.9E-26 T 22-04-2016 PP4_RS19540 10e5e8f94497c2be53121a620358b5d5 224 PANTHER PTHR18901:SF40 5 220 4.7E-70 T 22-04-2016 PP4_RS19540 10e5e8f94497c2be53121a620358b5d5 224 PANTHER PTHR18901 5 220 4.7E-70 T 22-04-2016 PP4_RS19540 10e5e8f94497c2be53121a620358b5d5 224 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 9 180 2.4E-10 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PP4_RS19540 10e5e8f94497c2be53121a620358b5d5 224 SUPERFAMILY SSF56784 5 215 3.66E-59 T 22-04-2016 IPR023214 HAD-like domain PP4_RS19540 10e5e8f94497c2be53121a620358b5d5 224 Gene3D G3DSA:1.10.150.240 23 73 2.0E-16 T 22-04-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 PP4_RS19540 10e5e8f94497c2be53121a620358b5d5 224 Gene3D G3DSA:3.40.50.1000 74 216 1.3E-45 T 22-04-2016 IPR023214 HAD-like domain PP4_RS19540 10e5e8f94497c2be53121a620358b5d5 224 Pfam PF13419 Haloacid dehalogenase-like hydrolase 8 186 4.7E-31 T 22-04-2016 IPR023214 HAD-like domain PP4_RS19540 10e5e8f94497c2be53121a620358b5d5 224 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 51 186 2.3E-10 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PP4_RS02250 9a0c04814462477b45959b17a9f2a0b2 374 Gene3D G3DSA:3.40.50.300 5 250 5.8E-80 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS02250 9a0c04814462477b45959b17a9f2a0b2 374 ProSitePatterns PS00211 ABC transporters family signature. 146 160 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS02250 9a0c04814462477b45959b17a9f2a0b2 374 PANTHER PTHR24220:SF402 16 372 1.0E-217 T 22-04-2016 PP4_RS02250 9a0c04814462477b45959b17a9f2a0b2 374 PANTHER PTHR24220 16 372 1.0E-217 T 22-04-2016 PP4_RS02250 9a0c04814462477b45959b17a9f2a0b2 374 SUPERFAMILY SSF52540 14 253 2.59E-86 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS02250 9a0c04814462477b45959b17a9f2a0b2 374 SMART SM00382 40 223 4.4E-15 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS02250 9a0c04814462477b45959b17a9f2a0b2 374 Pfam PF08402 TOBE domain 290 367 1.4E-17 T 22-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 PP4_RS02250 9a0c04814462477b45959b17a9f2a0b2 374 SUPERFAMILY SSF50331 248 367 4.93E-18 T 22-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal PP4_RS02250 9a0c04814462477b45959b17a9f2a0b2 374 Pfam PF00005 ABC transporter 32 173 1.6E-34 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS02250 9a0c04814462477b45959b17a9f2a0b2 374 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 46 364 3.1E-115 T 22-04-2016 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 PP4_RS07595 a6dc3fcaa225e9aaea13c85da5495297 281 PANTHER PTHR30388 1 278 1.4E-122 T 22-04-2016 PP4_RS07595 a6dc3fcaa225e9aaea13c85da5495297 281 Gene3D G3DSA:3.40.50.720 104 172 2.1E-5 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS07595 a6dc3fcaa225e9aaea13c85da5495297 281 PANTHER PTHR30388:SF5 1 278 1.4E-122 T 22-04-2016 PP4_RS07595 a6dc3fcaa225e9aaea13c85da5495297 281 SUPERFAMILY SSF51735 103 189 7.71E-9 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS07595 a6dc3fcaa225e9aaea13c85da5495297 281 Pfam PF13478 XdhC Rossmann domain 107 248 1.9E-36 T 22-04-2016 IPR027051 XdhC Rossmann domain PP4_RS07595 a6dc3fcaa225e9aaea13c85da5495297 281 Pfam PF02625 XdhC and CoxI family 13 77 1.1E-18 T 22-04-2016 IPR003777 XdhC- CoxI PP4_RS07595 a6dc3fcaa225e9aaea13c85da5495297 281 TIGRFAM TIGR02964 xanthine_xdhC: xanthine dehydrogenase accessory protein XdhC 19 249 2.3E-97 T 22-04-2016 IPR014308 Xanthine dehydrogenase accessory protein XdhC PP4_RS06765 b45eb547d0912ed114d7bd09290a6a96 294 Pfam PF03466 LysR substrate binding domain 96 293 2.4E-32 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS06765 b45eb547d0912ed114d7bd09290a6a96 294 SUPERFAMILY SSF46785 7 85 6.82E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS06765 b45eb547d0912ed114d7bd09290a6a96 294 Gene3D G3DSA:3.40.190.10 97 180 4.0E-22 T 22-04-2016 PP4_RS06765 b45eb547d0912ed114d7bd09290a6a96 294 PANTHER PTHR30537 1 294 5.6E-81 T 22-04-2016 PP4_RS06765 b45eb547d0912ed114d7bd09290a6a96 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 5.164733E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS06765 b45eb547d0912ed114d7bd09290a6a96 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 5.164733E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS06765 b45eb547d0912ed114d7bd09290a6a96 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 5.164733E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS06765 b45eb547d0912ed114d7bd09290a6a96 294 Gene3D G3DSA:3.40.190.10 181 259 5.4E-19 T 22-04-2016 PP4_RS06765 b45eb547d0912ed114d7bd09290a6a96 294 Gene3D G3DSA:1.10.10.10 7 87 1.5E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS06765 b45eb547d0912ed114d7bd09290a6a96 294 PANTHER PTHR30537:SF15 1 294 5.6E-81 T 22-04-2016 PP4_RS06765 b45eb547d0912ed114d7bd09290a6a96 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 69 2.4E-19 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS06765 b45eb547d0912ed114d7bd09290a6a96 294 SUPERFAMILY SSF53850 97 293 2.35E-34 T 22-04-2016 PP4_RS26015 032b0431654ca3d47947d57bb393b832 379 PIRSF PIRSF000443 1 378 1.7E-137 T 22-04-2016 IPR008220 Homoserine acetyltransferase GO:0004414|GO:0005737|GO:0009086 KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344|UniPathway: UPA00051 PP4_RS26015 032b0431654ca3d47947d57bb393b832 379 PANTHER PTHR32268:SF11 1 377 9.1E-186 T 22-04-2016 PP4_RS26015 032b0431654ca3d47947d57bb393b832 379 Pfam PF00561 alpha/beta hydrolase fold 51 360 1.0E-29 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS26015 032b0431654ca3d47947d57bb393b832 379 Gene3D G3DSA:3.40.50.1820 35 360 1.9E-34 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS26015 032b0431654ca3d47947d57bb393b832 379 PANTHER PTHR32268 1 377 9.1E-186 T 22-04-2016 PP4_RS26015 032b0431654ca3d47947d57bb393b832 379 TIGRFAM TIGR01392 homoserO_Ac_trn: homoserine O-acetyltransferase 21 373 2.9E-140 T 22-04-2016 IPR008220 Homoserine acetyltransferase GO:0004414|GO:0005737|GO:0009086 KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344|UniPathway: UPA00051 PP4_RS26015 032b0431654ca3d47947d57bb393b832 379 SUPERFAMILY SSF53474 14 375 4.63E-101 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS26015 032b0431654ca3d47947d57bb393b832 379 Hamap MF_00296 Homoserine O-acetyltransferase [metX]. 8 376 50.338 T 22-04-2016 IPR008220 Homoserine acetyltransferase GO:0004414|GO:0005737|GO:0009086 KEGG: 00270+2.3.1.31|MetaCyc: PWY-5344|UniPathway: UPA00051 PP4_RS21815 cd786077127875160d6d9abba730dc06 948 PANTHER PTHR11946:SF5 877 941 0.0 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 PP4_RS21815 cd786077127875160d6d9abba730dc06 948 PANTHER PTHR11946:SF5 330 567 0.0 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 PP4_RS21815 cd786077127875160d6d9abba730dc06 948 PANTHER PTHR11946:SF5 1 311 0.0 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 PP4_RS21815 cd786077127875160d6d9abba730dc06 948 PANTHER PTHR11946:SF5 605 857 0.0 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 PP4_RS21815 cd786077127875160d6d9abba730dc06 948 PRINTS PR00986 Valyl-tRNA synthetase signature 366 379 3.1E-34 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 PP4_RS21815 cd786077127875160d6d9abba730dc06 948 PRINTS PR00986 Valyl-tRNA synthetase signature 497 515 3.1E-34 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 PP4_RS21815 cd786077127875160d6d9abba730dc06 948 PRINTS PR00986 Valyl-tRNA synthetase signature 33 44 3.1E-34 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 PP4_RS21815 cd786077127875160d6d9abba730dc06 948 PRINTS PR00986 Valyl-tRNA synthetase signature 466 487 3.1E-34 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 PP4_RS21815 cd786077127875160d6d9abba730dc06 948 PRINTS PR00986 Valyl-tRNA synthetase signature 233 250 3.1E-34 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 PP4_RS21815 cd786077127875160d6d9abba730dc06 948 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 40 51 - T 22-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS21815 cd786077127875160d6d9abba730dc06 948 SUPERFAMILY SSF46589 881 945 6.28E-17 T 22-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 PP4_RS21815 cd786077127875160d6d9abba730dc06 948 SUPERFAMILY SSF50677 188 362 4.58E-58 T 22-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 PP4_RS21815 cd786077127875160d6d9abba730dc06 948 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 14 628 8.4E-212 T 22-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS21815 cd786077127875160d6d9abba730dc06 948 Gene3D G3DSA:1.10.730.10 628 813 1.1E-66 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS21815 cd786077127875160d6d9abba730dc06 948 SUPERFAMILY SSF47323 639 896 5.79E-72 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS21815 cd786077127875160d6d9abba730dc06 948 Hamap MF_02004 Valine--tRNA ligase [valS]. 1 946 16.085 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 PP4_RS21815 cd786077127875160d6d9abba730dc06 948 Gene3D G3DSA:3.90.740.10 191 356 2.0E-45 T 22-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 PP4_RS21815 cd786077127875160d6d9abba730dc06 948 Pfam PF08264 Anticodon-binding domain of tRNA 669 820 5.1E-44 T 22-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 PP4_RS21815 cd786077127875160d6d9abba730dc06 948 Gene3D G3DSA:3.40.50.620 606 627 3.0E-141 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS21815 cd786077127875160d6d9abba730dc06 948 Gene3D G3DSA:3.40.50.620 3 190 3.0E-141 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS21815 cd786077127875160d6d9abba730dc06 948 Gene3D G3DSA:3.40.50.620 361 568 3.0E-141 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS21815 cd786077127875160d6d9abba730dc06 948 TIGRFAM TIGR00422 valS: valine--tRNA ligase 1 928 0.0 T 22-04-2016 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: REACT_71 PP4_RS21815 cd786077127875160d6d9abba730dc06 948 PANTHER PTHR11946 877 941 0.0 T 22-04-2016 PP4_RS21815 cd786077127875160d6d9abba730dc06 948 PANTHER PTHR11946 330 567 0.0 T 22-04-2016 PP4_RS21815 cd786077127875160d6d9abba730dc06 948 PANTHER PTHR11946 1 311 0.0 T 22-04-2016 PP4_RS21815 cd786077127875160d6d9abba730dc06 948 PANTHER PTHR11946 605 857 0.0 T 22-04-2016 PP4_RS21815 cd786077127875160d6d9abba730dc06 948 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 881 944 2.9E-18 T 22-04-2016 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 PP4_RS21815 cd786077127875160d6d9abba730dc06 948 Gene3D G3DSA:1.10.287.380 875 945 1.7E-8 T 22-04-2016 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 PP4_RS21815 cd786077127875160d6d9abba730dc06 948 SUPERFAMILY SSF52374 606 638 1.15E-135 T 22-04-2016 PP4_RS21815 cd786077127875160d6d9abba730dc06 948 SUPERFAMILY SSF52374 1 189 1.15E-135 T 22-04-2016 PP4_RS21815 cd786077127875160d6d9abba730dc06 948 SUPERFAMILY SSF52374 361 568 1.15E-135 T 22-04-2016 PP4_RS04790 088aa58826182091f6da528414dc0695 291 SUPERFAMILY SSF46785 3 86 2.45E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS04790 088aa58826182091f6da528414dc0695 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 5.8E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS04790 088aa58826182091f6da528414dc0695 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 5.8E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS04790 088aa58826182091f6da528414dc0695 291 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 5.8E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS04790 088aa58826182091f6da528414dc0695 291 PANTHER PTHR30537:SF26 1 289 3.8E-80 T 22-04-2016 PP4_RS04790 088aa58826182091f6da528414dc0695 291 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 66 4.4E-20 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS04790 088aa58826182091f6da528414dc0695 291 PANTHER PTHR30537 1 289 3.8E-80 T 22-04-2016 PP4_RS04790 088aa58826182091f6da528414dc0695 291 Gene3D G3DSA:3.40.190.10 97 190 2.4E-24 T 22-04-2016 PP4_RS04790 088aa58826182091f6da528414dc0695 291 SUPERFAMILY SSF53850 98 290 5.61E-32 T 22-04-2016 PP4_RS04790 088aa58826182091f6da528414dc0695 291 Pfam PF03466 LysR substrate binding domain 88 288 7.3E-31 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS04790 088aa58826182091f6da528414dc0695 291 Gene3D G3DSA:1.10.10.10 3 85 2.6E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS09325 cbc7fd8a55c58f015361b0f771c78c71 454 PANTHER PTHR24423 139 155 1.3E-66 T 22-04-2016 PP4_RS09325 cbc7fd8a55c58f015361b0f771c78c71 454 PANTHER PTHR24423 175 452 1.3E-66 T 22-04-2016 PP4_RS09325 cbc7fd8a55c58f015361b0f771c78c71 454 SUPERFAMILY SSF55874 291 453 1.57E-38 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS09325 cbc7fd8a55c58f015361b0f771c78c71 454 SMART SM00387 348 454 1.4E-27 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS09325 cbc7fd8a55c58f015361b0f771c78c71 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 415 433 1.8E-11 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS09325 cbc7fd8a55c58f015361b0f771c78c71 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 403 413 1.8E-11 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS09325 cbc7fd8a55c58f015361b0f771c78c71 454 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 399 1.8E-11 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS09325 cbc7fd8a55c58f015361b0f771c78c71 454 SMART SM00388 237 302 4.0E-13 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS09325 cbc7fd8a55c58f015361b0f771c78c71 454 Pfam PF08521 Two-component sensor kinase N-terminal 16 160 3.4E-12 T 22-04-2016 IPR013727 Two-component sensor kinase, N-terminal PP4_RS09325 cbc7fd8a55c58f015361b0f771c78c71 454 SUPERFAMILY SSF47384 221 300 1.82E-16 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS09325 cbc7fd8a55c58f015361b0f771c78c71 454 Gene3D G3DSA:3.30.565.10 309 453 1.2E-36 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS09325 cbc7fd8a55c58f015361b0f771c78c71 454 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 350 452 9.4E-20 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS09325 cbc7fd8a55c58f015361b0f771c78c71 454 Pfam PF00512 His Kinase A (phospho-acceptor) domain 239 300 5.0E-11 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS09325 cbc7fd8a55c58f015361b0f771c78c71 454 PANTHER PTHR24423:SF474 139 155 1.3E-66 T 22-04-2016 PP4_RS09325 cbc7fd8a55c58f015361b0f771c78c71 454 PANTHER PTHR24423:SF474 175 452 1.3E-66 T 22-04-2016 PP4_RS09325 cbc7fd8a55c58f015361b0f771c78c71 454 Gene3D G3DSA:1.10.287.130 229 298 9.7E-12 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS11410 583008bcc742e895450e72af3e0e16e4 545 TIGRFAM TIGR01132 pgm: phosphoglucomutase, alpha-D-glucose phosphate-specific 1 544 3.5E-265 T 22-04-2016 IPR005852 Phosphoglucomutase, alpha-D-glucose specific GO:0004614|GO:0005975 KEGG: 00010+5.4.2.2|KEGG: 00030+5.4.2.2|KEGG: 00052+5.4.2.2|KEGG: 00230+5.4.2.2|KEGG: 00500+5.4.2.2|KEGG: 00520+5.4.2.2|KEGG: 00521+5.4.2.2|MetaCyc: PWY-2723|MetaCyc: PWY-3801|MetaCyc: PWY-5384|MetaCyc: PWY-5661|MetaCyc: PWY-5940|MetaCyc: PWY-5941|MetaCyc: PWY-622|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|MetaCyc: PWY-7343 PP4_RS11410 583008bcc742e895450e72af3e0e16e4 545 PANTHER PTHR22573:SF52 18 544 2.6E-251 T 22-04-2016 PP4_RS11410 583008bcc742e895450e72af3e0e16e4 545 SUPERFAMILY SSF53738 306 447 2.16E-30 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS11410 583008bcc742e895450e72af3e0e16e4 545 Gene3D G3DSA:3.30.310.50 467 543 1.2E-27 T 22-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS11410 583008bcc742e895450e72af3e0e16e4 545 Gene3D G3DSA:3.40.120.10 227 318 2.4E-43 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS11410 583008bcc742e895450e72af3e0e16e4 545 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 141 150 - T 22-04-2016 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS11410 583008bcc742e895450e72af3e0e16e4 545 SUPERFAMILY SSF55957 434 544 2.27E-20 T 22-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS11410 583008bcc742e895450e72af3e0e16e4 545 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 322 438 2.0E-28 T 22-04-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS11410 583008bcc742e895450e72af3e0e16e4 545 Gene3D G3DSA:3.40.120.10 31 226 8.7E-60 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS11410 583008bcc742e895450e72af3e0e16e4 545 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 40 181 3.3E-36 T 22-04-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS11410 583008bcc742e895450e72af3e0e16e4 545 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 479 535 2.0E-9 T 22-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS11410 583008bcc742e895450e72af3e0e16e4 545 PANTHER PTHR22573 18 544 2.6E-251 T 22-04-2016 PP4_RS11410 583008bcc742e895450e72af3e0e16e4 545 SUPERFAMILY SSF53738 25 236 3.73E-50 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS11410 583008bcc742e895450e72af3e0e16e4 545 Gene3D G3DSA:3.40.120.10 319 442 4.5E-32 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS11410 583008bcc742e895450e72af3e0e16e4 545 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 211 318 4.7E-15 T 22-04-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS13870 f3d37314bfa55bf4ad228ceaa6d4f1a8 846 SUPERFAMILY SSF55781 124 313 3.27E-54 T 22-04-2016 IPR029016 GAF domain-like PP4_RS13870 f3d37314bfa55bf4ad228ceaa6d4f1a8 846 Pfam PF00072 Response regulator receiver domain 734 813 3.9E-9 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS13870 f3d37314bfa55bf4ad228ceaa6d4f1a8 846 Pfam PF08446 PAS fold 12 118 5.9E-26 T 22-04-2016 IPR013654 PAS fold-2 GO:0006355 PP4_RS13870 f3d37314bfa55bf4ad228ceaa6d4f1a8 846 SMART SM00065 141 314 1.5E-8 T 22-04-2016 IPR003018 GAF domain GO:0005515 PP4_RS13870 f3d37314bfa55bf4ad228ceaa6d4f1a8 846 Pfam PF07536 HWE histidine kinase 520 600 7.4E-20 T 22-04-2016 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 PP4_RS13870 f3d37314bfa55bf4ad228ceaa6d4f1a8 846 SUPERFAMILY SSF52172 732 845 1.99E-14 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS13870 f3d37314bfa55bf4ad228ceaa6d4f1a8 846 Gene3D G3DSA:3.40.50.2300 731 845 1.6E-14 T 22-04-2016 PP4_RS13870 f3d37314bfa55bf4ad228ceaa6d4f1a8 846 Gene3D G3DSA:3.30.450.40 130 316 1.2E-9 T 22-04-2016 IPR029016 GAF domain-like PP4_RS13870 f3d37314bfa55bf4ad228ceaa6d4f1a8 846 PIRSF PIRSF036397 1 846 0.0 T 22-04-2016 IPR009219 Bacteriophytochrome, CheY-like PP4_RS13870 f3d37314bfa55bf4ad228ceaa6d4f1a8 846 Pfam PF01590 GAF domain 144 304 7.8E-18 T 22-04-2016 IPR003018 GAF domain GO:0005515 PP4_RS13870 f3d37314bfa55bf4ad228ceaa6d4f1a8 846 SMART SM00448 732 840 5.9E-5 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS13870 f3d37314bfa55bf4ad228ceaa6d4f1a8 846 PRINTS PR01033 Phytochrome signature 425 444 4.7E-16 T 22-04-2016 IPR001294 Phytochrome GO:0006355|GO:0009584 PP4_RS13870 f3d37314bfa55bf4ad228ceaa6d4f1a8 846 PRINTS PR01033 Phytochrome signature 459 477 4.7E-16 T 22-04-2016 IPR001294 Phytochrome GO:0006355|GO:0009584 PP4_RS13870 f3d37314bfa55bf4ad228ceaa6d4f1a8 846 PRINTS PR01033 Phytochrome signature 156 175 4.7E-16 T 22-04-2016 IPR001294 Phytochrome GO:0006355|GO:0009584 PP4_RS13870 f3d37314bfa55bf4ad228ceaa6d4f1a8 846 PRINTS PR01033 Phytochrome signature 340 360 4.7E-16 T 22-04-2016 IPR001294 Phytochrome GO:0006355|GO:0009584 PP4_RS13870 f3d37314bfa55bf4ad228ceaa6d4f1a8 846 PRINTS PR01033 Phytochrome signature 242 263 4.7E-16 T 22-04-2016 IPR001294 Phytochrome GO:0006355|GO:0009584 PP4_RS13870 f3d37314bfa55bf4ad228ceaa6d4f1a8 846 SUPERFAMILY SSF55781 292 497 1.64E-46 T 22-04-2016 IPR029016 GAF domain-like PP4_RS13870 f3d37314bfa55bf4ad228ceaa6d4f1a8 846 PANTHER PTHR24423 97 431 5.5E-47 T 22-04-2016 PP4_RS13870 f3d37314bfa55bf4ad228ceaa6d4f1a8 846 Pfam PF00360 Phytochrome region 321 500 6.2E-50 T 22-04-2016 IPR013515 Phytochrome, central region GO:0006355|GO:0009584|GO:0018298 PP4_RS13870 f3d37314bfa55bf4ad228ceaa6d4f1a8 846 SMART SM00911 520 600 3.9E-27 T 22-04-2016 IPR011102 Signal transduction histidine kinase, HWE region GO:0004673 PP4_RS13870 f3d37314bfa55bf4ad228ceaa6d4f1a8 846 SUPERFAMILY SSF55785 5 118 1.2E-30 T 22-04-2016 IPR000014 PAS domain PP4_RS13870 f3d37314bfa55bf4ad228ceaa6d4f1a8 846 PANTHER PTHR24423:SF518 97 431 5.5E-47 T 22-04-2016 PP4_RS13225 9b8d3ef9039d2cd0df65b6a91b7e278e 455 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 380 443 4.8E-15 T 22-04-2016 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain PP4_RS13225 9b8d3ef9039d2cd0df65b6a91b7e278e 455 SMART SM00849 13 236 1.6E-12 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS13225 9b8d3ef9039d2cd0df65b6a91b7e278e 455 PANTHER PTHR11203 1 451 3.0E-112 T 22-04-2016 PP4_RS13225 9b8d3ef9039d2cd0df65b6a91b7e278e 455 PANTHER PTHR11203:SF11 1 451 3.0E-112 T 22-04-2016 PP4_RS13225 9b8d3ef9039d2cd0df65b6a91b7e278e 455 Pfam PF00753 Metallo-beta-lactamase superfamily 17 194 2.5E-16 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS13225 9b8d3ef9039d2cd0df65b6a91b7e278e 455 SMART SM01027 247 366 2.5E-53 T 22-04-2016 IPR022712 Beta-Casp domain PP4_RS13225 9b8d3ef9039d2cd0df65b6a91b7e278e 455 Pfam PF10996 Beta-Casp domain 247 366 1.5E-25 T 22-04-2016 IPR022712 Beta-Casp domain PP4_RS13225 9b8d3ef9039d2cd0df65b6a91b7e278e 455 Gene3D G3DSA:3.60.15.10 1 100 1.6E-44 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS13225 9b8d3ef9039d2cd0df65b6a91b7e278e 455 Gene3D G3DSA:3.60.15.10 135 258 1.6E-44 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS13225 9b8d3ef9039d2cd0df65b6a91b7e278e 455 SUPERFAMILY SSF56281 1 452 1.83E-126 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS16105 3b274c6e852e858fd5b0ccc939024a0f 562 Gene3D G3DSA:3.40.50.80 201 320 1.9E-27 T 22-04-2016 PP4_RS16105 3b274c6e852e858fd5b0ccc939024a0f 562 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 10 83 3.5E-13 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS16105 3b274c6e852e858fd5b0ccc939024a0f 562 SUPERFAMILY SSF52343 201 320 3.01E-26 T 22-04-2016 PP4_RS16105 3b274c6e852e858fd5b0ccc939024a0f 562 Gene3D G3DSA:3.90.230.10 348 505 4.4E-18 T 22-04-2016 IPR000994 Peptidase M24, structural domain PP4_RS16105 3b274c6e852e858fd5b0ccc939024a0f 562 SUPERFAMILY SSF63380 103 197 1.15E-19 T 22-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 PP4_RS16105 3b274c6e852e858fd5b0ccc939024a0f 562 SUPERFAMILY SSF54292 5 93 5.51E-21 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS16105 3b274c6e852e858fd5b0ccc939024a0f 562 PANTHER PTHR19370 34 320 2.1E-40 T 22-04-2016 PP4_RS16105 3b274c6e852e858fd5b0ccc939024a0f 562 PANTHER PTHR19370:SF68 34 320 2.1E-40 T 22-04-2016 PP4_RS16105 3b274c6e852e858fd5b0ccc939024a0f 562 Gene3D G3DSA:2.40.30.10 103 197 2.8E-21 T 22-04-2016 PP4_RS16105 3b274c6e852e858fd5b0ccc939024a0f 562 Pfam PF00557 Metallopeptidase family M24 350 550 1.9E-20 T 22-04-2016 IPR000994 Peptidase M24, structural domain PP4_RS16105 3b274c6e852e858fd5b0ccc939024a0f 562 Pfam PF00970 Oxidoreductase FAD-binding domain 105 197 3.7E-11 T 22-04-2016 IPR008333 Oxidoreductase, FAD-binding domain PP4_RS16105 3b274c6e852e858fd5b0ccc939024a0f 562 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 38 46 - T 22-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 PP4_RS16105 3b274c6e852e858fd5b0ccc939024a0f 562 SUPERFAMILY SSF55920 348 550 3.01E-26 T 22-04-2016 IPR000994 Peptidase M24, structural domain PP4_RS16105 3b274c6e852e858fd5b0ccc939024a0f 562 Pfam PF00175 Oxidoreductase NAD-binding domain 209 301 3.4E-8 T 22-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 PP4_RS16105 3b274c6e852e858fd5b0ccc939024a0f 562 Gene3D G3DSA:3.10.20.30 4 91 2.8E-20 T 22-04-2016 IPR012675 Beta-grasp domain PP4_RS02110 fd00d69bdf011dfb0c54a3efed1c21f7 184 PIRSF PIRSF000441 7 178 1.8E-27 T 22-04-2016 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|UniPathway: UPA00136 PP4_RS02110 fd00d69bdf011dfb0c54a3efed1c21f7 184 SUPERFAMILY SSF51161 58 170 1.8E-23 T 22-04-2016 IPR011004 Trimeric LpxA-like PP4_RS02110 fd00d69bdf011dfb0c54a3efed1c21f7 184 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 129 162 2.3E-4 T 22-04-2016 IPR001451 Hexapeptide repeat PP4_RS02110 fd00d69bdf011dfb0c54a3efed1c21f7 184 Gene3D G3DSA:2.160.10.10 76 176 1.7E-19 T 22-04-2016 PP4_RS02110 fd00d69bdf011dfb0c54a3efed1c21f7 184 PANTHER PTHR23416 37 170 7.2E-17 T 22-04-2016 PP4_RS06655 ded64aa27d2349d112a5b2e1de207494 715 SMART SM00341 529 608 2.5E-19 T 22-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 PP4_RS06655 ded64aa27d2349d112a5b2e1de207494 715 Pfam PF00570 HRDC domain 533 599 1.5E-22 T 22-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 PP4_RS06655 ded64aa27d2349d112a5b2e1de207494 715 TIGRFAM TIGR00614 recQ_fam: ATP-dependent DNA helicase, RecQ family 8 455 4.0E-153 T 22-04-2016 IPR004589 DNA helicase, ATP-dependent, RecQ type GO:0006310|GO:0008026 PP4_RS06655 ded64aa27d2349d112a5b2e1de207494 715 Pfam PF09382 RQC domain 400 510 2.8E-37 T 22-04-2016 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 PP4_RS06655 ded64aa27d2349d112a5b2e1de207494 715 Pfam PF00270 DEAD/DEAH box helicase 22 181 9.4E-17 T 22-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 PP4_RS06655 ded64aa27d2349d112a5b2e1de207494 715 Gene3D G3DSA:1.10.150.80 531 600 1.8E-20 T 22-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 PP4_RS06655 ded64aa27d2349d112a5b2e1de207494 715 Gene3D G3DSA:1.10.10.60 613 649 9.3E-4 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS06655 ded64aa27d2349d112a5b2e1de207494 715 PANTHER PTHR13710:SF81 1 609 4.4E-281 T 22-04-2016 PP4_RS06655 ded64aa27d2349d112a5b2e1de207494 715 SMART SM00487 14 210 6.8E-28 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PP4_RS06655 ded64aa27d2349d112a5b2e1de207494 715 Gene3D G3DSA:1.10.10.10 337 510 2.6E-58 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS06655 ded64aa27d2349d112a5b2e1de207494 715 SUPERFAMILY SSF52540 200 447 1.52E-60 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS06655 ded64aa27d2349d112a5b2e1de207494 715 SUPERFAMILY SSF47819 531 600 2.62E-22 T 22-04-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 PP4_RS06655 ded64aa27d2349d112a5b2e1de207494 715 SMART SM00956 404 507 1.7E-51 T 22-04-2016 IPR018982 RQC domain GO:0006260|GO:0006281|GO:0043140 PP4_RS06655 ded64aa27d2349d112a5b2e1de207494 715 SUPERFAMILY SSF52540 5 189 1.2E-41 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS06655 ded64aa27d2349d112a5b2e1de207494 715 Gene3D G3DSA:3.40.50.300 198 336 5.1E-48 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS06655 ded64aa27d2349d112a5b2e1de207494 715 TIGRFAM TIGR01389 recQ: ATP-dependent DNA helicase RecQ 6 600 4.7E-247 T 22-04-2016 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial GO:0004003|GO:0006310|GO:0009432 PP4_RS06655 ded64aa27d2349d112a5b2e1de207494 715 Gene3D G3DSA:3.40.50.300 4 192 3.1E-52 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS06655 ded64aa27d2349d112a5b2e1de207494 715 SMART SM00490 242 323 1.2E-24 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS06655 ded64aa27d2349d112a5b2e1de207494 715 Pfam PF16124 RecQ zinc-binding 335 396 6.7E-19 T 22-04-2016 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain PP4_RS06655 ded64aa27d2349d112a5b2e1de207494 715 Pfam PF00271 Helicase conserved C-terminal domain 218 323 2.1E-14 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS06655 ded64aa27d2349d112a5b2e1de207494 715 PANTHER PTHR13710 1 609 4.4E-281 T 22-04-2016 PP4_RS16115 cbbcdef8a754194e0e8dbd59ae5ba0c3 807 Gene3D G3DSA:2.40.170.20 277 807 2.2E-125 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS16115 cbbcdef8a754194e0e8dbd59ae5ba0c3 807 PANTHER PTHR32552:SF37 150 807 9.4E-194 T 22-04-2016 PP4_RS16115 cbbcdef8a754194e0e8dbd59ae5ba0c3 807 PANTHER PTHR32552:SF37 16 48 9.4E-194 T 22-04-2016 PP4_RS16115 cbbcdef8a754194e0e8dbd59ae5ba0c3 807 Gene3D G3DSA:2.170.130.10 137 268 8.0E-35 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS16115 cbbcdef8a754194e0e8dbd59ae5ba0c3 807 Pfam PF07660 Secretin and TonB N terminus short domain 66 111 1.8E-9 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS16115 cbbcdef8a754194e0e8dbd59ae5ba0c3 807 SMART SM00965 64 114 9.4E-11 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS16115 cbbcdef8a754194e0e8dbd59ae5ba0c3 807 Pfam PF00593 TonB dependent receptor 564 806 1.6E-28 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS16115 cbbcdef8a754194e0e8dbd59ae5ba0c3 807 PANTHER PTHR32552 150 807 9.4E-194 T 22-04-2016 PP4_RS16115 cbbcdef8a754194e0e8dbd59ae5ba0c3 807 PANTHER PTHR32552 16 48 9.4E-194 T 22-04-2016 PP4_RS16115 cbbcdef8a754194e0e8dbd59ae5ba0c3 807 Pfam PF07715 TonB-dependent Receptor Plug Domain 158 259 1.7E-13 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS16115 cbbcdef8a754194e0e8dbd59ae5ba0c3 807 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 160 806 1.8E-103 T 22-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 PP4_RS16115 cbbcdef8a754194e0e8dbd59ae5ba0c3 807 SUPERFAMILY SSF56935 150 807 1.31E-123 T 22-04-2016 PP4_RS13335 3b9fb78aa90e3b0810bc2892929b5484 443 SUPERFAMILY SSF103473 19 440 2.62E-79 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS13335 3b9fb78aa90e3b0810bc2892929b5484 443 PANTHER PTHR11662:SF257 23 412 1.5E-111 T 22-04-2016 PP4_RS13335 3b9fb78aa90e3b0810bc2892929b5484 443 Pfam PF07690 Major Facilitator Superfamily 37 401 8.2E-52 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS13335 3b9fb78aa90e3b0810bc2892929b5484 443 PIRSF PIRSF002808 10 440 1.4E-36 T 22-04-2016 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 PP4_RS13335 3b9fb78aa90e3b0810bc2892929b5484 443 PANTHER PTHR11662 23 412 1.5E-111 T 22-04-2016 PP4_RS13335 3b9fb78aa90e3b0810bc2892929b5484 443 Gene3D G3DSA:1.20.1250.20 244 439 6.5E-28 T 22-04-2016 PP4_RS13335 3b9fb78aa90e3b0810bc2892929b5484 443 Gene3D G3DSA:1.20.1250.20 27 222 2.0E-47 T 22-04-2016 PP4_RS21830 61e3aab1abac742e8d3c10e73d90221e 335 Hamap MF_00730 Nucleoid-associated protein YejK [yejK]. 1 333 42.16 T 22-04-2016 IPR007358 Nucleoid-associated protein NdpA GO:0009295 PP4_RS21830 61e3aab1abac742e8d3c10e73d90221e 335 PANTHER PTHR38772 1 335 2.5E-159 T 22-04-2016 PP4_RS21830 61e3aab1abac742e8d3c10e73d90221e 335 Pfam PF04245 37-kD nucleoid-associated bacterial protein 7 326 1.4E-88 T 22-04-2016 IPR007358 Nucleoid-associated protein NdpA GO:0009295 PP4_RS05255 8c896b5adc2339f53273c17e204c444b 207 PANTHER PTHR26402:SF151 2 206 1.5E-65 T 22-04-2016 PP4_RS05255 8c896b5adc2339f53273c17e204c444b 207 Gene3D G3DSA:1.10.10.10 149 206 1.5E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS05255 8c896b5adc2339f53273c17e204c444b 207 PANTHER PTHR26402 2 206 1.5E-65 T 22-04-2016 PP4_RS05255 8c896b5adc2339f53273c17e204c444b 207 Pfam PF00072 Response regulator receiver domain 4 115 1.7E-27 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS05255 8c896b5adc2339f53273c17e204c444b 207 ProSitePatterns PS00622 LuxR-type HTH domain signature. 161 188 - T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS05255 8c896b5adc2339f53273c17e204c444b 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 161 177 3.8E-12 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS05255 8c896b5adc2339f53273c17e204c444b 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 177 189 3.8E-12 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS05255 8c896b5adc2339f53273c17e204c444b 207 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 147 161 3.8E-12 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS05255 8c896b5adc2339f53273c17e204c444b 207 Gene3D G3DSA:3.40.50.2300 2 148 1.2E-35 T 22-04-2016 PP4_RS05255 8c896b5adc2339f53273c17e204c444b 207 SMART SM00448 2 114 4.2E-31 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS05255 8c896b5adc2339f53273c17e204c444b 207 Pfam PF00196 Bacterial regulatory proteins, luxR family 146 201 2.4E-21 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS05255 8c896b5adc2339f53273c17e204c444b 207 SMART SM00421 144 201 3.1E-21 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS05255 8c896b5adc2339f53273c17e204c444b 207 SUPERFAMILY SSF52172 2 168 1.71E-32 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS00315 4ca55f63ae4b5dcaa5c5d07fb5c5b1cf 325 Gene3D G3DSA:3.40.50.720 148 257 2.4E-29 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS00315 4ca55f63ae4b5dcaa5c5d07fb5c5b1cf 325 PANTHER PTHR11695 16 325 2.4E-132 T 22-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PP4_RS00315 4ca55f63ae4b5dcaa5c5d07fb5c5b1cf 325 SMART SM00829 11 323 1.4E-30 T 22-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 PP4_RS00315 4ca55f63ae4b5dcaa5c5d07fb5c5b1cf 325 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 87 9.6E-9 T 22-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 PP4_RS00315 4ca55f63ae4b5dcaa5c5d07fb5c5b1cf 325 Pfam PF00107 Zinc-binding dehydrogenase 152 257 5.1E-27 T 22-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 PP4_RS00315 4ca55f63ae4b5dcaa5c5d07fb5c5b1cf 325 SUPERFAMILY SSF51735 112 265 5.57E-47 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS00315 4ca55f63ae4b5dcaa5c5d07fb5c5b1cf 325 SUPERFAMILY SSF50129 2 145 8.85E-39 T 22-04-2016 IPR011032 GroES-like PP4_RS00315 4ca55f63ae4b5dcaa5c5d07fb5c5b1cf 325 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 141 162 - T 22-04-2016 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 PP4_RS00315 4ca55f63ae4b5dcaa5c5d07fb5c5b1cf 325 Gene3D G3DSA:3.90.180.10 3 147 3.3E-47 T 22-04-2016 IPR011032 GroES-like PP4_RS00315 4ca55f63ae4b5dcaa5c5d07fb5c5b1cf 325 PANTHER PTHR11695:SF605 16 325 2.4E-132 T 22-04-2016 PP4_RS14230 f8b7e6f25770b52f7a239fcfa4a56576 439 SMART SM00283 249 439 5.4E-16 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS14230 f8b7e6f25770b52f7a239fcfa4a56576 439 SUPERFAMILY SSF58104 234 436 8.5E-52 T 22-04-2016 PP4_RS14230 f8b7e6f25770b52f7a239fcfa4a56576 439 Gene3D G3DSA:3.30.450.20 156 253 1.2E-22 T 22-04-2016 PP4_RS14230 f8b7e6f25770b52f7a239fcfa4a56576 439 Gene3D G3DSA:3.30.450.20 34 137 1.2E-23 T 22-04-2016 PP4_RS14230 f8b7e6f25770b52f7a239fcfa4a56576 439 Gene3D G3DSA:1.10.287.950 254 436 2.0E-45 T 22-04-2016 PP4_RS14230 f8b7e6f25770b52f7a239fcfa4a56576 439 Pfam PF08448 PAS fold 35 139 3.2E-14 T 22-04-2016 IPR013656 PAS fold-4 PP4_RS14230 f8b7e6f25770b52f7a239fcfa4a56576 439 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 29 143 3.7E-19 T 22-04-2016 IPR000014 PAS domain PP4_RS14230 f8b7e6f25770b52f7a239fcfa4a56576 439 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 144 265 1.9E-16 T 22-04-2016 IPR000014 PAS domain PP4_RS14230 f8b7e6f25770b52f7a239fcfa4a56576 439 SUPERFAMILY SSF55785 33 135 1.08E-24 T 22-04-2016 IPR000014 PAS domain PP4_RS14230 f8b7e6f25770b52f7a239fcfa4a56576 439 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 285 436 2.5E-36 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS14230 f8b7e6f25770b52f7a239fcfa4a56576 439 Pfam PF08447 PAS fold 168 253 3.0E-14 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 PP4_RS14230 f8b7e6f25770b52f7a239fcfa4a56576 439 SMART SM00091 143 213 0.084 T 22-04-2016 IPR000014 PAS domain PP4_RS14230 f8b7e6f25770b52f7a239fcfa4a56576 439 SMART SM00091 23 91 0.0047 T 22-04-2016 IPR000014 PAS domain PP4_RS14230 f8b7e6f25770b52f7a239fcfa4a56576 439 SMART SM00086 96 138 3.3E-4 T 22-04-2016 IPR001610 PAC motif PP4_RS14230 f8b7e6f25770b52f7a239fcfa4a56576 439 SMART SM00086 218 260 0.0092 T 22-04-2016 IPR001610 PAC motif PP4_RS14230 f8b7e6f25770b52f7a239fcfa4a56576 439 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 256 285 5.2E-7 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS14230 f8b7e6f25770b52f7a239fcfa4a56576 439 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 355 384 5.2E-7 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS14230 f8b7e6f25770b52f7a239fcfa4a56576 439 PANTHER PTHR24422 3 436 7.7E-153 T 22-04-2016 PP4_RS14230 f8b7e6f25770b52f7a239fcfa4a56576 439 SUPERFAMILY SSF55785 155 257 2.09E-23 T 22-04-2016 IPR000014 PAS domain PP4_RS14230 f8b7e6f25770b52f7a239fcfa4a56576 439 PANTHER PTHR24422:SF10 3 436 7.7E-153 T 22-04-2016 PP4_RS16295 8b61139d8b03e2795a7e04bd896ed500 577 SUPERFAMILY SSF51905 8 285 2.93E-40 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS16295 8b61139d8b03e2795a7e04bd896ed500 577 SUPERFAMILY SSF51905 497 530 2.93E-40 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS16295 8b61139d8b03e2795a7e04bd896ed500 577 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 12 34 4.5E-9 T 22-04-2016 PP4_RS16295 8b61139d8b03e2795a7e04bd896ed500 577 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 519 534 4.5E-9 T 22-04-2016 PP4_RS16295 8b61139d8b03e2795a7e04bd896ed500 577 Gene3D G3DSA:3.90.700.10 345 493 3.1E-28 T 22-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain PP4_RS16295 8b61139d8b03e2795a7e04bd896ed500 577 Gene3D G3DSA:3.50.50.60 6 144 4.6E-62 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS16295 8b61139d8b03e2795a7e04bd896ed500 577 Gene3D G3DSA:3.50.50.60 499 562 4.6E-62 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS16295 8b61139d8b03e2795a7e04bd896ed500 577 Gene3D G3DSA:3.50.50.60 212 318 4.6E-62 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS16295 8b61139d8b03e2795a7e04bd896ed500 577 SUPERFAMILY SSF56425 342 503 2.88E-30 T 22-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain PP4_RS16295 8b61139d8b03e2795a7e04bd896ed500 577 Pfam PF00890 FAD binding domain 12 544 2.8E-104 T 22-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain PP4_RS16295 8b61139d8b03e2795a7e04bd896ed500 577 PANTHER PTHR11632 10 135 4.6E-158 T 22-04-2016 PP4_RS16295 8b61139d8b03e2795a7e04bd896ed500 577 PANTHER PTHR11632 208 563 4.6E-158 T 22-04-2016 PP4_RS16295 8b61139d8b03e2795a7e04bd896ed500 577 PANTHER PTHR11632:SF59 10 135 4.6E-158 T 22-04-2016 PP4_RS16295 8b61139d8b03e2795a7e04bd896ed500 577 PANTHER PTHR11632:SF59 208 563 4.6E-158 T 22-04-2016 PP4_RS26445 3d32c1bcb06c8e3e2f1cfc0923f5912b 151 PANTHER PTHR36966 9 151 1.1E-22 T 22-04-2016 PP4_RS26445 3d32c1bcb06c8e3e2f1cfc0923f5912b 151 SUPERFAMILY SSF143422 9 136 8.24E-32 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 PP4_RS26445 3d32c1bcb06c8e3e2f1cfc0923f5912b 151 SMART SM01321 16 130 2.0E-36 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 PP4_RS26445 3d32c1bcb06c8e3e2f1cfc0923f5912b 151 Pfam PF01797 Transposase IS200 like 21 129 6.6E-16 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 PP4_RS26445 3d32c1bcb06c8e3e2f1cfc0923f5912b 151 Gene3D G3DSA:3.30.70.1290 9 132 5.9E-18 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 PP4_RS26445 3d32c1bcb06c8e3e2f1cfc0923f5912b 151 PANTHER PTHR36966:SF1 9 151 1.1E-22 T 22-04-2016 PP4_RS04115 58901f1a7a0d51ccb7ddf3606a8ed0d4 148 PANTHER PTHR23404:SF2 27 142 5.2E-40 T 22-04-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 PP4_RS04115 58901f1a7a0d51ccb7ddf3606a8ed0d4 148 Gene3D G3DSA:3.90.1170.40 3 148 9.7E-56 T 22-04-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 PP4_RS04115 58901f1a7a0d51ccb7ddf3606a8ed0d4 148 SUPERFAMILY SSF54690 3 148 2.48E-52 T 22-04-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 PP4_RS04115 58901f1a7a0d51ccb7ddf3606a8ed0d4 148 PANTHER PTHR23404 27 142 5.2E-40 T 22-04-2016 PP4_RS04115 58901f1a7a0d51ccb7ddf3606a8ed0d4 148 Pfam PF02391 MoaE protein 10 119 1.6E-36 T 22-04-2016 IPR003448 Molybdopterin biosynthesis MoaE GO:0006777 KEGG: 00790+2.8.1.12|MetaCyc: PWY-6823|UniPathway: UPA00344 PP4_RS16090 be26d95672d1ea7f84602d8d9e117ab4 296 Gene3D G3DSA:3.40.50.1820 33 296 4.2E-37 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS16090 be26d95672d1ea7f84602d8d9e117ab4 296 PRINTS PR00111 Alpha/beta hydrolase fold signature 128 141 1.7E-6 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS16090 be26d95672d1ea7f84602d8d9e117ab4 296 PRINTS PR00111 Alpha/beta hydrolase fold signature 114 127 1.7E-6 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS16090 be26d95672d1ea7f84602d8d9e117ab4 296 PRINTS PR00111 Alpha/beta hydrolase fold signature 68 83 1.7E-6 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS16090 be26d95672d1ea7f84602d8d9e117ab4 296 Pfam PF00561 alpha/beta hydrolase fold 45 281 3.3E-14 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS16090 be26d95672d1ea7f84602d8d9e117ab4 296 SUPERFAMILY SSF53474 25 296 6.15E-38 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS16090 be26d95672d1ea7f84602d8d9e117ab4 296 PANTHER PTHR10992 178 296 7.1E-26 T 22-04-2016 PP4_RS16090 be26d95672d1ea7f84602d8d9e117ab4 296 PANTHER PTHR10992 27 155 7.1E-26 T 22-04-2016 PP4_RS19645 b48102a32d86efb5dffee0927fdaff1c 67 Gene3D G3DSA:2.60.40.1090 14 64 8.0E-4 T 22-04-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 SUPERFAMILY SSF56784 540 784 5.96E-55 T 22-04-2016 IPR023214 HAD-like domain PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 SUPERFAMILY SSF56784 483 502 5.96E-55 T 22-04-2016 IPR023214 HAD-like domain PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 73 135 1.7E-11 T 22-04-2016 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 TIGRFAM TIGR00003 TIGR00003: copper ion binding protein 8 68 3.4E-8 T 22-04-2016 IPR006122 Heavy metal-associated domain, copper ion-binding GO:0005507 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 201 787 9.6E-178 T 22-04-2016 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 Gene3D G3DSA:3.30.70.100 70 139 7.4E-24 T 22-04-2016 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 219 785 3.8E-187 T 22-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 Pfam PF00122 E1-E2 ATPase 255 475 3.9E-65 T 22-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 ProSitePatterns PS01229 Hypothetical cof family signature 2. 684 706 - T 22-04-2016 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 Gene3D G3DSA:2.70.150.10 225 385 8.6E-27 T 22-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 Pfam PF00403 Heavy-metal-associated domain 75 133 5.8E-14 T 22-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 Pfam PF00403 Heavy-metal-associated domain 10 66 2.4E-12 T 22-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 SUPERFAMILY SSF55008 70 139 7.72E-19 T 22-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 Gene3D G3DSA:3.40.1110.10 508 612 4.6E-14 T 22-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 SUPERFAMILY SSF81665 254 284 1.31E-15 T 22-04-2016 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 SUPERFAMILY SSF81665 733 760 1.31E-15 T 22-04-2016 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 SUPERFAMILY SSF81665 385 478 1.31E-15 T 22-04-2016 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 257 767 3.1E-87 T 22-04-2016 IPR001757 P-type ATPase GO:0016021 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 SUPERFAMILY SSF55008 5 68 6.54E-17 T 22-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 ProSitePatterns PS01047 Heavy-metal-associated domain. 11 40 - T 22-04-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 ProSitePatterns PS01047 Heavy-metal-associated domain. 77 106 - T 22-04-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 486 492 - T 22-04-2016 IPR018303 P-type ATPase, phosphorylation site PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 PANTHER PTHR24093:SF332 8 798 0.0 T 22-04-2016 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 Gene3D G3DSA:3.30.70.100 7 68 4.7E-21 T 22-04-2016 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 PRINTS PR00943 Copper-transporting ATPase signature 204 223 2.6E-14 T 22-04-2016 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 PRINTS PR00943 Copper-transporting ATPase signature 467 482 2.6E-14 T 22-04-2016 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 PRINTS PR00943 Copper-transporting ATPase signature 254 273 2.6E-14 T 22-04-2016 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 PRINTS PR00943 Copper-transporting ATPase signature 407 421 2.6E-14 T 22-04-2016 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 PRINTS PR00943 Copper-transporting ATPase signature 274 292 2.6E-14 T 22-04-2016 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 PRINTS PR00943 Copper-transporting ATPase signature 87 101 2.6E-14 T 22-04-2016 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 PRINTS PR00943 Copper-transporting ATPase signature 662 679 2.6E-14 T 22-04-2016 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 SUPERFAMILY SSF81653 287 384 2.09E-24 T 22-04-2016 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 PANTHER PTHR24093 8 798 0.0 T 22-04-2016 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 Pfam PF00702 haloacid dehalogenase-like hydrolase 481 698 6.2E-43 T 22-04-2016 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 334 348 1.1E-21 T 22-04-2016 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 684 703 1.1E-21 T 22-04-2016 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 484 498 1.1E-21 T 22-04-2016 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 707 719 1.1E-21 T 22-04-2016 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 632 642 1.1E-21 T 22-04-2016 PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 Gene3D G3DSA:3.40.50.1000 455 500 9.7E-51 T 22-04-2016 IPR023214 HAD-like domain PP4_RS03365 389efbe80880643c4484e35083c4b8da 799 Gene3D G3DSA:3.40.50.1000 613 752 9.7E-51 T 22-04-2016 IPR023214 HAD-like domain PP4_RS24945 bfe665a4848eeccb2aa9550b3c5ff5df 861 SMART SM00357 90 149 6.3E-12 T 22-04-2016 IPR011129 Cold shock protein GO:0003676 PP4_RS24945 bfe665a4848eeccb2aa9550b3c5ff5df 861 Hamap MF_01895 Ribonuclease R [rnr]. 42 746 58.357 T 22-04-2016 IPR011805 Ribonuclease R GO:0003723|GO:0004518 PP4_RS24945 bfe665a4848eeccb2aa9550b3c5ff5df 861 PANTHER PTHR23355:SF9 8 836 2.1E-279 T 22-04-2016 PP4_RS24945 bfe665a4848eeccb2aa9550b3c5ff5df 861 SUPERFAMILY SSF50249 142 239 7.01E-18 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS24945 bfe665a4848eeccb2aa9550b3c5ff5df 861 Pfam PF00575 S1 RNA binding domain 661 745 1.6E-13 T 22-04-2016 IPR003029 S1 domain GO:0003676 PP4_RS24945 bfe665a4848eeccb2aa9550b3c5ff5df 861 SUPERFAMILY SSF50249 224 663 1.71E-150 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS24945 bfe665a4848eeccb2aa9550b3c5ff5df 861 Gene3D G3DSA:2.40.50.140 665 747 1.4E-20 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS24945 bfe665a4848eeccb2aa9550b3c5ff5df 861 SMART SM00955 264 602 7.1E-190 T 22-04-2016 PP4_RS24945 bfe665a4848eeccb2aa9550b3c5ff5df 861 PANTHER PTHR23355 8 836 2.1E-279 T 22-04-2016 PP4_RS24945 bfe665a4848eeccb2aa9550b3c5ff5df 861 SMART SM00316 663 746 5.4E-14 T 22-04-2016 IPR022967 RNA-binding domain, S1 PP4_RS24945 bfe665a4848eeccb2aa9550b3c5ff5df 861 Pfam PF08206 Ribonuclease B OB domain 91 148 7.4E-22 T 22-04-2016 IPR013223 Ribonuclease B, N-terminal OB domain PP4_RS24945 bfe665a4848eeccb2aa9550b3c5ff5df 861 TIGRFAM TIGR00358 3_prime_RNase: VacB and RNase II family 3'-5' exoribonucleases 78 745 6.6E-229 T 22-04-2016 IPR004476 Ribonuclease II/ribonuclease R GO:0003723|GO:0004540|GO:0016070 PP4_RS24945 bfe665a4848eeccb2aa9550b3c5ff5df 861 Pfam PF08461 Ribonuclease R winged-helix domain 27 81 2.1E-8 T 22-04-2016 IPR013668 Ribonuclease R winged-helix domain PP4_RS24945 bfe665a4848eeccb2aa9550b3c5ff5df 861 SUPERFAMILY SSF50249 665 744 7.15E-22 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS24945 bfe665a4848eeccb2aa9550b3c5ff5df 861 SUPERFAMILY SSF50249 71 151 2.57E-18 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS24945 bfe665a4848eeccb2aa9550b3c5ff5df 861 Pfam PF00773 RNB domain 264 601 2.1E-110 T 22-04-2016 PP4_RS24945 bfe665a4848eeccb2aa9550b3c5ff5df 861 TIGRFAM TIGR02063 RNase_R: ribonuclease R 23 745 1.2E-265 T 22-04-2016 IPR011805 Ribonuclease R GO:0003723|GO:0004518 PP4_RS24945 bfe665a4848eeccb2aa9550b3c5ff5df 861 ProSitePatterns PS01175 Ribonuclease II family signature. 569 593 - T 22-04-2016 IPR022966 Ribonuclease II/R, conserved site PP4_RS00625 5bbf3c20b1500ee81216dfb9d35b84ef 273 PANTHER PTHR34606 9 270 8.2E-26 T 22-04-2016 PP4_RS00625 5bbf3c20b1500ee81216dfb9d35b84ef 273 Pfam PF04972 BON domain 28 94 2.5E-14 T 22-04-2016 IPR007055 BON domain PP4_RS00625 5bbf3c20b1500ee81216dfb9d35b84ef 273 Pfam PF04972 BON domain 200 268 1.4E-13 T 22-04-2016 IPR007055 BON domain PP4_RS00625 5bbf3c20b1500ee81216dfb9d35b84ef 273 Pfam PF04972 BON domain 113 177 5.1E-17 T 22-04-2016 IPR007055 BON domain PP4_RS00625 5bbf3c20b1500ee81216dfb9d35b84ef 273 PANTHER PTHR34606:SF3 9 270 8.2E-26 T 22-04-2016 PP4_RS00625 5bbf3c20b1500ee81216dfb9d35b84ef 273 SMART SM00749 117 182 0.0091 T 22-04-2016 IPR014004 Transport-associated and nodulation domain, bacteria PP4_RS00625 5bbf3c20b1500ee81216dfb9d35b84ef 273 SMART SM00749 205 268 6.1 T 22-04-2016 IPR014004 Transport-associated and nodulation domain, bacteria PP4_RS00625 5bbf3c20b1500ee81216dfb9d35b84ef 273 SMART SM00749 32 95 5.4 T 22-04-2016 IPR014004 Transport-associated and nodulation domain, bacteria PP4_RS15365 154da65d92d347129599b3cb82b2cd70 821 TIGRFAM TIGR01782 TonB-Xanth-Caul: TonB-dependent receptor 31 819 8.4E-185 T 22-04-2016 IPR010104 Bacterial TonB-dependent receptor PP4_RS15365 154da65d92d347129599b3cb82b2cd70 821 SUPERFAMILY SSF56935 32 369 1.48E-90 T 22-04-2016 PP4_RS15365 154da65d92d347129599b3cb82b2cd70 821 SUPERFAMILY SSF56935 469 818 1.48E-90 T 22-04-2016 PP4_RS15365 154da65d92d347129599b3cb82b2cd70 821 SUPERFAMILY SSF56935 396 433 1.48E-90 T 22-04-2016 PP4_RS15365 154da65d92d347129599b3cb82b2cd70 821 PANTHER PTHR32552:SF16 393 814 6.2E-20 T 22-04-2016 PP4_RS15365 154da65d92d347129599b3cb82b2cd70 821 PANTHER PTHR32552:SF16 247 348 6.2E-20 T 22-04-2016 PP4_RS15365 154da65d92d347129599b3cb82b2cd70 821 PANTHER PTHR32552:SF16 17 229 6.2E-20 T 22-04-2016 PP4_RS15365 154da65d92d347129599b3cb82b2cd70 821 Gene3D G3DSA:2.170.130.10 53 156 9.0E-13 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS15365 154da65d92d347129599b3cb82b2cd70 821 Pfam PF14905 Outer membrane protein beta-barrel family 486 818 8.4E-27 T 22-04-2016 PP4_RS15365 154da65d92d347129599b3cb82b2cd70 821 Gene3D G3DSA:2.40.170.20 381 459 8.7E-69 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS15365 154da65d92d347129599b3cb82b2cd70 821 Gene3D G3DSA:2.40.170.20 157 349 8.7E-69 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS15365 154da65d92d347129599b3cb82b2cd70 821 Gene3D G3DSA:2.40.170.20 495 818 8.7E-69 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS15365 154da65d92d347129599b3cb82b2cd70 821 Pfam PF07715 TonB-dependent Receptor Plug Domain 51 155 2.2E-12 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS15365 154da65d92d347129599b3cb82b2cd70 821 PANTHER PTHR32552 393 814 6.2E-20 T 22-04-2016 PP4_RS15365 154da65d92d347129599b3cb82b2cd70 821 PANTHER PTHR32552 247 348 6.2E-20 T 22-04-2016 PP4_RS15365 154da65d92d347129599b3cb82b2cd70 821 PANTHER PTHR32552 17 229 6.2E-20 T 22-04-2016 PP4_RS17315 eb479f3621f6cb0ef13987cb67d0f354 451 SMART SM00388 246 304 1.2E-7 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS17315 eb479f3621f6cb0ef13987cb67d0f354 451 Gene3D G3DSA:1.10.287.130 238 290 1.9E-12 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS17315 eb479f3621f6cb0ef13987cb67d0f354 451 SMART SM00387 343 451 1.2E-26 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS17315 eb479f3621f6cb0ef13987cb67d0f354 451 SUPERFAMILY SSF47384 231 302 2.55E-10 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS17315 eb479f3621f6cb0ef13987cb67d0f354 451 SUPERFAMILY SSF55874 304 450 3.54E-32 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS17315 eb479f3621f6cb0ef13987cb67d0f354 451 Pfam PF00672 HAMP domain 174 242 4.2E-7 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS17315 eb479f3621f6cb0ef13987cb67d0f354 451 PANTHER PTHR24423:SF533 1 15 1.8E-52 T 22-04-2016 PP4_RS17315 eb479f3621f6cb0ef13987cb67d0f354 451 PANTHER PTHR24423:SF533 187 449 1.8E-52 T 22-04-2016 PP4_RS17315 eb479f3621f6cb0ef13987cb67d0f354 451 Gene3D G3DSA:3.30.565.10 291 450 3.5E-32 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS17315 eb479f3621f6cb0ef13987cb67d0f354 451 PRINTS PR00344 Bacterial sensor protein C-terminal signature 412 430 1.7E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS17315 eb479f3621f6cb0ef13987cb67d0f354 451 PRINTS PR00344 Bacterial sensor protein C-terminal signature 436 449 1.7E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS17315 eb479f3621f6cb0ef13987cb67d0f354 451 PRINTS PR00344 Bacterial sensor protein C-terminal signature 395 405 1.7E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS17315 eb479f3621f6cb0ef13987cb67d0f354 451 PRINTS PR00344 Bacterial sensor protein C-terminal signature 377 391 1.7E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS17315 eb479f3621f6cb0ef13987cb67d0f354 451 PANTHER PTHR24423 1 15 1.8E-52 T 22-04-2016 PP4_RS17315 eb479f3621f6cb0ef13987cb67d0f354 451 PANTHER PTHR24423 187 449 1.8E-52 T 22-04-2016 PP4_RS17315 eb479f3621f6cb0ef13987cb67d0f354 451 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 345 450 7.5E-18 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS21780 84c18455363669439a896f1952f407cb 70 Pfam PF00313 'Cold-shock' DNA-binding domain 6 67 1.7E-28 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PP4_RS21780 84c18455363669439a896f1952f407cb 70 PANTHER PTHR11544:SF63 1 67 2.1E-40 T 22-04-2016 PP4_RS21780 84c18455363669439a896f1952f407cb 70 PANTHER PTHR11544 1 67 2.1E-40 T 22-04-2016 PP4_RS21780 84c18455363669439a896f1952f407cb 70 SUPERFAMILY SSF50249 2 67 3.18E-24 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS21780 84c18455363669439a896f1952f407cb 70 PIRSF PIRSF002599 1 70 7.5E-23 T 22-04-2016 IPR012156 Cold shock, CspA GO:0003676 PP4_RS21780 84c18455363669439a896f1952f407cb 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 36 - T 22-04-2016 IPR019844 Cold-shock conserved site PP4_RS21780 84c18455363669439a896f1952f407cb 70 Gene3D G3DSA:2.40.50.140 5 67 1.9E-30 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS21780 84c18455363669439a896f1952f407cb 70 PRINTS PR00050 Cold shock protein signature 42 60 1.1E-16 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PP4_RS21780 84c18455363669439a896f1952f407cb 70 PRINTS PR00050 Cold shock protein signature 27 36 1.1E-16 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PP4_RS21780 84c18455363669439a896f1952f407cb 70 PRINTS PR00050 Cold shock protein signature 7 22 1.1E-16 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PP4_RS21780 84c18455363669439a896f1952f407cb 70 SMART SM00357 6 69 1.4E-27 T 22-04-2016 IPR011129 Cold shock protein GO:0003676 PP4_RS24545 8f00b80b8cc6d8eaa3684af3b6f3504b 91 PANTHER PTHR38036:SF1 1 91 2.2E-19 T 22-04-2016 PP4_RS24545 8f00b80b8cc6d8eaa3684af3b6f3504b 91 ProDom PD061650 JHP0447 HP0495 CJ0253 12 91 4.0E-4 T 22-04-2016 PP4_RS24545 8f00b80b8cc6d8eaa3684af3b6f3504b 91 Pfam PF04359 Protein of unknown function (DUF493) 9 91 2.0E-23 T 22-04-2016 IPR007454 Uncharacterised protein family UPF0250 PP4_RS24545 8f00b80b8cc6d8eaa3684af3b6f3504b 91 Hamap MF_00659 UPF0250 protein YbeD [ybeD]. 3 91 21.888 T 22-04-2016 IPR007454 Uncharacterised protein family UPF0250 PP4_RS24545 8f00b80b8cc6d8eaa3684af3b6f3504b 91 PANTHER PTHR38036 1 91 2.2E-19 T 22-04-2016 PP4_RS24545 8f00b80b8cc6d8eaa3684af3b6f3504b 91 Gene3D G3DSA:3.30.70.1460 7 91 6.2E-25 T 22-04-2016 IPR027471 YbeD-like domain PP4_RS24545 8f00b80b8cc6d8eaa3684af3b6f3504b 91 SUPERFAMILY SSF117991 6 91 4.32E-21 T 22-04-2016 IPR027471 YbeD-like domain PP4_RS22920 03bc8ca43fae796dab5e966483d8c44d 197 PANTHER PTHR33284 1 197 1.3E-56 T 22-04-2016 PP4_RS22920 03bc8ca43fae796dab5e966483d8c44d 197 Gene3D G3DSA:2.40.240.10 5 96 2.6E-33 T 22-04-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: REACT_71 PP4_RS22920 03bc8ca43fae796dab5e966483d8c44d 197 Pfam PF01386 Ribosomal L25p family 6 93 3.8E-28 T 22-04-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 PP4_RS22920 03bc8ca43fae796dab5e966483d8c44d 197 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 8 96 3.0E-40 T 22-04-2016 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 PP4_RS22920 03bc8ca43fae796dab5e966483d8c44d 197 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 6 182 2.4E-47 T 22-04-2016 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 PP4_RS22920 03bc8ca43fae796dab5e966483d8c44d 197 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 101 187 3.9E-27 T 22-04-2016 IPR020057 Ribosomal protein L25, beta domain PP4_RS22920 03bc8ca43fae796dab5e966483d8c44d 197 SUPERFAMILY SSF50715 4 193 5.06E-56 T 22-04-2016 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: REACT_71 PP4_RS22920 03bc8ca43fae796dab5e966483d8c44d 197 Gene3D G3DSA:2.170.120.20 99 193 6.6E-31 T 22-04-2016 IPR020057 Ribosomal protein L25, beta domain PP4_RS22920 03bc8ca43fae796dab5e966483d8c44d 197 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 4 184 28.189 T 22-04-2016 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 PP4_RS22920 03bc8ca43fae796dab5e966483d8c44d 197 Hamap MF_01336 50S ribosomal protein L25 [rplY]. 4 96 21.85 T 22-04-2016 IPR020055 Ribosomal protein L25, short-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 PP4_RS13220 fccfb547efd94f6cfab5503c8e10e2b9 308 SUPERFAMILY SSF52402 3 135 1.09E-7 T 22-04-2016 PP4_RS13220 fccfb547efd94f6cfab5503c8e10e2b9 308 SUPERFAMILY SSF52402 152 299 4.86E-18 T 22-04-2016 PP4_RS13220 fccfb547efd94f6cfab5503c8e10e2b9 308 Gene3D G3DSA:3.40.50.620 152 297 5.4E-18 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS13220 fccfb547efd94f6cfab5503c8e10e2b9 308 Pfam PF00582 Universal stress protein family 152 295 2.2E-12 T 22-04-2016 IPR006016 UspA GO:0006950 PP4_RS13220 fccfb547efd94f6cfab5503c8e10e2b9 308 Gene3D G3DSA:3.40.50.620 2 124 2.5E-6 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS20290 45432f447aa36ff3a805afbcc8d65dc7 1089 SUPERFAMILY SSF52172 818 937 4.98E-33 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS20290 45432f447aa36ff3a805afbcc8d65dc7 1089 SUPERFAMILY SSF47226 918 1037 5.1E-14 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS20290 45432f447aa36ff3a805afbcc8d65dc7 1089 Gene3D G3DSA:3.40.190.10 474 511 6.9E-16 T 22-04-2016 PP4_RS20290 45432f447aa36ff3a805afbcc8d65dc7 1089 Gene3D G3DSA:3.40.190.10 229 268 9.8E-13 T 22-04-2016 PP4_RS20290 45432f447aa36ff3a805afbcc8d65dc7 1089 Gene3D G3DSA:3.40.190.10 58 138 9.8E-13 T 22-04-2016 PP4_RS20290 45432f447aa36ff3a805afbcc8d65dc7 1089 Gene3D G3DSA:3.40.190.10 291 372 6.9E-16 T 22-04-2016 PP4_RS20290 45432f447aa36ff3a805afbcc8d65dc7 1089 Pfam PF01627 Hpt domain 978 1046 3.3E-6 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS20290 45432f447aa36ff3a805afbcc8d65dc7 1089 Pfam PF00512 His Kinase A (phospho-acceptor) domain 569 635 4.1E-14 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS20290 45432f447aa36ff3a805afbcc8d65dc7 1089 Gene3D G3DSA:1.10.287.130 562 631 5.1E-12 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS20290 45432f447aa36ff3a805afbcc8d65dc7 1089 SUPERFAMILY SSF53850 54 269 2.07E-26 T 22-04-2016 PP4_RS20290 45432f447aa36ff3a805afbcc8d65dc7 1089 PANTHER PTHR24423 548 977 1.1E-125 T 22-04-2016 PP4_RS20290 45432f447aa36ff3a805afbcc8d65dc7 1089 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 298 510 2.9E-24 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS20290 45432f447aa36ff3a805afbcc8d65dc7 1089 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 58 262 4.5E-18 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS20290 45432f447aa36ff3a805afbcc8d65dc7 1089 Gene3D G3DSA:3.40.50.2300 817 938 1.7E-33 T 22-04-2016 PP4_RS20290 45432f447aa36ff3a805afbcc8d65dc7 1089 Gene3D G3DSA:1.20.120.160 947 1059 2.9E-11 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS20290 45432f447aa36ff3a805afbcc8d65dc7 1089 PRINTS PR00344 Bacterial sensor protein C-terminal signature 781 794 8.1E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS20290 45432f447aa36ff3a805afbcc8d65dc7 1089 PRINTS PR00344 Bacterial sensor protein C-terminal signature 757 775 8.1E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS20290 45432f447aa36ff3a805afbcc8d65dc7 1089 PRINTS PR00344 Bacterial sensor protein C-terminal signature 722 736 8.1E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS20290 45432f447aa36ff3a805afbcc8d65dc7 1089 PANTHER PTHR24423 58 74 1.1E-125 T 22-04-2016 PP4_RS20290 45432f447aa36ff3a805afbcc8d65dc7 1089 SMART SM00062 293 514 1.2E-23 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS20290 45432f447aa36ff3a805afbcc8d65dc7 1089 SMART SM00062 51 291 5.7E-5 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS20290 45432f447aa36ff3a805afbcc8d65dc7 1089 Gene3D G3DSA:3.40.190.10 373 458 3.0E-4 T 22-04-2016 PP4_RS20290 45432f447aa36ff3a805afbcc8d65dc7 1089 SMART SM00387 682 797 5.0E-30 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS20290 45432f447aa36ff3a805afbcc8d65dc7 1089 SMART SM00388 569 635 7.2E-17 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS20290 45432f447aa36ff3a805afbcc8d65dc7 1089 Gene3D G3DSA:3.30.565.10 636 799 2.3E-38 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS20290 45432f447aa36ff3a805afbcc8d65dc7 1089 Pfam PF00072 Response regulator receiver domain 821 935 9.1E-22 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS20290 45432f447aa36ff3a805afbcc8d65dc7 1089 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 683 796 6.7E-21 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS20290 45432f447aa36ff3a805afbcc8d65dc7 1089 SUPERFAMILY SSF55874 625 794 9.3E-38 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS20290 45432f447aa36ff3a805afbcc8d65dc7 1089 SUPERFAMILY SSF47384 552 636 1.41E-17 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS20290 45432f447aa36ff3a805afbcc8d65dc7 1089 SUPERFAMILY SSF53850 287 515 1.33E-36 T 22-04-2016 PP4_RS20290 45432f447aa36ff3a805afbcc8d65dc7 1089 SMART SM00448 819 935 2.6E-28 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS20290 45432f447aa36ff3a805afbcc8d65dc7 1089 PANTHER PTHR24423:SF382 548 977 1.1E-125 T 22-04-2016 PP4_RS20290 45432f447aa36ff3a805afbcc8d65dc7 1089 PANTHER PTHR24423:SF382 58 74 1.1E-125 T 22-04-2016 PP4_RS10625 9e251fe357e8fba0b53f7fc033441d85 238 SUPERFAMILY SSF52172 2 127 5.98E-39 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS10625 9e251fe357e8fba0b53f7fc033441d85 238 SUPERFAMILY SSF46894 134 234 7.94E-25 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS10625 9e251fe357e8fba0b53f7fc033441d85 238 Gene3D G3DSA:1.10.10.10 136 234 1.7E-27 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS10625 9e251fe357e8fba0b53f7fc033441d85 238 SMART SM00448 3 113 1.8E-39 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS10625 9e251fe357e8fba0b53f7fc033441d85 238 SMART SM00862 157 232 2.2E-23 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS10625 9e251fe357e8fba0b53f7fc033441d85 238 PANTHER PTHR26402:SF596 3 237 1.3E-97 T 22-04-2016 PP4_RS10625 9e251fe357e8fba0b53f7fc033441d85 238 Pfam PF00072 Response regulator receiver domain 5 113 4.2E-29 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS10625 9e251fe357e8fba0b53f7fc033441d85 238 PANTHER PTHR26402 3 237 1.3E-97 T 22-04-2016 PP4_RS10625 9e251fe357e8fba0b53f7fc033441d85 238 Pfam PF00486 Transcriptional regulatory protein, C terminal 159 232 5.6E-22 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS10625 9e251fe357e8fba0b53f7fc033441d85 238 Gene3D G3DSA:3.40.50.2300 2 125 4.1E-39 T 22-04-2016 PP4_RS07785 b076f71989380903d956ff07951706ac 337 SMART SM01006 167 214 2.0E-19 T 22-04-2016 IPR019432 Siderophore biosynthesis protein, conserved domain PP4_RS07785 b076f71989380903d956ff07951706ac 337 SUPERFAMILY SSF55729 135 329 3.09E-61 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS07785 b076f71989380903d956ff07951706ac 337 PANTHER PTHR31438 113 337 6.5E-80 T 22-04-2016 PP4_RS07785 b076f71989380903d956ff07951706ac 337 Pfam PF13523 Acetyltransferase (GNAT) domain 171 315 3.1E-54 T 22-04-2016 PP4_RS07785 b076f71989380903d956ff07951706ac 337 Gene3D G3DSA:3.40.630.30 145 335 1.6E-69 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS07785 b076f71989380903d956ff07951706ac 337 PANTHER PTHR31438:SF1 113 337 6.5E-80 T 22-04-2016 PP4_RS17395 6aad711a8e798103fe5e2f9764f1e9b7 748 Gene3D G3DSA:3.30.450.40 146 328 1.4E-12 T 22-04-2016 IPR029016 GAF domain-like PP4_RS17395 6aad711a8e798103fe5e2f9764f1e9b7 748 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 634 744 7.2E-17 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS17395 6aad711a8e798103fe5e2f9764f1e9b7 748 Pfam PF08446 PAS fold 14 123 1.4E-22 T 22-04-2016 IPR013654 PAS fold-2 GO:0006355 PP4_RS17395 6aad711a8e798103fe5e2f9764f1e9b7 748 SMART SM00387 634 746 3.1E-26 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS17395 6aad711a8e798103fe5e2f9764f1e9b7 748 Gene3D G3DSA:3.30.450.20 28 70 6.5E-4 T 22-04-2016 PP4_RS17395 6aad711a8e798103fe5e2f9764f1e9b7 748 PANTHER PTHR24423 109 747 3.9E-106 T 22-04-2016 PP4_RS17395 6aad711a8e798103fe5e2f9764f1e9b7 748 Pfam PF00512 His Kinase A (phospho-acceptor) domain 527 591 3.9E-9 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS17395 6aad711a8e798103fe5e2f9764f1e9b7 748 PRINTS PR01033 Phytochrome signature 167 186 5.7E-14 T 22-04-2016 IPR001294 Phytochrome GO:0006355|GO:0009584 PP4_RS17395 6aad711a8e798103fe5e2f9764f1e9b7 748 PRINTS PR01033 Phytochrome signature 468 486 5.7E-14 T 22-04-2016 IPR001294 Phytochrome GO:0006355|GO:0009584 PP4_RS17395 6aad711a8e798103fe5e2f9764f1e9b7 748 PRINTS PR01033 Phytochrome signature 437 456 5.7E-14 T 22-04-2016 IPR001294 Phytochrome GO:0006355|GO:0009584 PP4_RS17395 6aad711a8e798103fe5e2f9764f1e9b7 748 PRINTS PR01033 Phytochrome signature 254 275 5.7E-14 T 22-04-2016 IPR001294 Phytochrome GO:0006355|GO:0009584 PP4_RS17395 6aad711a8e798103fe5e2f9764f1e9b7 748 Pfam PF01590 GAF domain 152 317 2.1E-18 T 22-04-2016 IPR003018 GAF domain GO:0005515 PP4_RS17395 6aad711a8e798103fe5e2f9764f1e9b7 748 SUPERFAMILY SSF55781 136 322 3.05E-58 T 22-04-2016 IPR029016 GAF domain-like PP4_RS17395 6aad711a8e798103fe5e2f9764f1e9b7 748 SMART SM00065 152 326 1.5E-6 T 22-04-2016 IPR003018 GAF domain GO:0005515 PP4_RS17395 6aad711a8e798103fe5e2f9764f1e9b7 748 PANTHER PTHR24423:SF518 109 747 3.9E-106 T 22-04-2016 PP4_RS17395 6aad711a8e798103fe5e2f9764f1e9b7 748 SUPERFAMILY SSF47384 509 591 3.14E-15 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS17395 6aad711a8e798103fe5e2f9764f1e9b7 748 Gene3D G3DSA:3.30.565.10 592 745 2.5E-34 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS17395 6aad711a8e798103fe5e2f9764f1e9b7 748 SUPERFAMILY SSF55781 303 506 9.81E-47 T 22-04-2016 IPR029016 GAF domain-like PP4_RS17395 6aad711a8e798103fe5e2f9764f1e9b7 748 Pfam PF00360 Phytochrome region 335 509 6.8E-51 T 22-04-2016 IPR013515 Phytochrome, central region GO:0006355|GO:0009584|GO:0018298 PP4_RS17395 6aad711a8e798103fe5e2f9764f1e9b7 748 Gene3D G3DSA:1.10.287.130 518 588 4.0E-11 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS17395 6aad711a8e798103fe5e2f9764f1e9b7 748 SMART SM00388 525 593 6.0E-5 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS17395 6aad711a8e798103fe5e2f9764f1e9b7 748 SUPERFAMILY SSF55874 592 745 2.36E-35 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS17395 6aad711a8e798103fe5e2f9764f1e9b7 748 SUPERFAMILY SSF55785 11 124 5.83E-29 T 22-04-2016 IPR000014 PAS domain PP4_RS19810 070347a9d6b5eea39bb53c76bb6047f6 395 Pfam PF07690 Major Facilitator Superfamily 17 316 3.2E-30 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS19810 070347a9d6b5eea39bb53c76bb6047f6 395 SUPERFAMILY SSF103473 8 389 1.44E-49 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS19810 070347a9d6b5eea39bb53c76bb6047f6 395 Gene3D G3DSA:1.20.1250.20 9 189 1.5E-22 T 22-04-2016 PP4_RS19810 070347a9d6b5eea39bb53c76bb6047f6 395 PANTHER PTHR23501:SF79 4 395 2.3E-149 T 22-04-2016 PP4_RS19810 070347a9d6b5eea39bb53c76bb6047f6 395 Gene3D G3DSA:1.20.1250.20 215 389 1.4E-13 T 22-04-2016 PP4_RS19810 070347a9d6b5eea39bb53c76bb6047f6 395 PANTHER PTHR23501 4 395 2.3E-149 T 22-04-2016 PP4_RS26680 1835a4ee534ec744d9afdcf0ffc0b75b 150 PANTHER PTHR35146:SF1 1 147 3.9E-44 T 22-04-2016 PP4_RS26680 1835a4ee534ec744d9afdcf0ffc0b75b 150 Pfam PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 18 145 1.9E-39 T 22-04-2016 IPR003791 Protein of unknown function UPF0178 PP4_RS26680 1835a4ee534ec744d9afdcf0ffc0b75b 150 PANTHER PTHR35146 1 147 3.9E-44 T 22-04-2016 PP4_RS26680 1835a4ee534ec744d9afdcf0ffc0b75b 150 Hamap MF_00489 UPF0178 protein YaiI [yaiI]. 1 147 31.898 T 22-04-2016 IPR003791 Protein of unknown function UPF0178 PP4_RS03595 80cc85d79690897c231c2b99bdceab5f 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 8.5E-19 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS03595 80cc85d79690897c231c2b99bdceab5f 301 SUPERFAMILY SSF53850 88 298 1.81E-46 T 22-04-2016 PP4_RS03595 80cc85d79690897c231c2b99bdceab5f 301 PANTHER PTHR30537:SF5 1 297 8.9E-108 T 22-04-2016 PP4_RS03595 80cc85d79690897c231c2b99bdceab5f 301 Gene3D G3DSA:1.10.10.10 2 88 1.8E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS03595 80cc85d79690897c231c2b99bdceab5f 301 Pfam PF03466 LysR substrate binding domain 88 292 7.2E-45 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS03595 80cc85d79690897c231c2b99bdceab5f 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 4.9E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS03595 80cc85d79690897c231c2b99bdceab5f 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 4.9E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS03595 80cc85d79690897c231c2b99bdceab5f 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 4.9E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS03595 80cc85d79690897c231c2b99bdceab5f 301 Gene3D G3DSA:3.40.190.10 167 262 6.7E-21 T 22-04-2016 PP4_RS03595 80cc85d79690897c231c2b99bdceab5f 301 SUPERFAMILY SSF46785 4 88 2.23E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS03595 80cc85d79690897c231c2b99bdceab5f 301 Gene3D G3DSA:3.40.190.10 89 166 2.5E-5 T 22-04-2016 PP4_RS03595 80cc85d79690897c231c2b99bdceab5f 301 PANTHER PTHR30537 1 297 8.9E-108 T 22-04-2016 PP4_RS01985 33e51e541b9bc801afe949cac022cfe4 254 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 16 79 7.8E-18 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS01985 33e51e541b9bc801afe949cac022cfe4 254 SUPERFAMILY SSF46785 10 99 5.44E-27 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS01985 33e51e541b9bc801afe949cac022cfe4 254 Pfam PF03459 TOBE domain 115 178 1.0E-12 T 22-04-2016 IPR005116 Transport-associated OB, type 1 PP4_RS01985 33e51e541b9bc801afe949cac022cfe4 254 Gene3D G3DSA:2.40.50.100 111 173 3.8E-23 T 22-04-2016 PP4_RS01985 33e51e541b9bc801afe949cac022cfe4 254 Gene3D G3DSA:1.10.10.10 12 110 2.4E-39 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS01985 33e51e541b9bc801afe949cac022cfe4 254 PANTHER PTHR30432 15 254 3.2E-43 T 22-04-2016 PP4_RS01985 33e51e541b9bc801afe949cac022cfe4 254 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 113 180 1.3E-17 T 22-04-2016 IPR004606 Molybdenum-pterin binding GO:0006810|GO:0030151 PP4_RS01985 33e51e541b9bc801afe949cac022cfe4 254 TIGRFAM TIGR00637 ModE_repress: ModE molybdate transport repressor domain 15 103 1.6E-30 T 22-04-2016 IPR003725 Molybdenum-binding protein ModE, N-terminal PP4_RS01985 33e51e541b9bc801afe949cac022cfe4 254 SUPERFAMILY SSF50331 113 181 8.08E-17 T 22-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal PP4_RS01985 33e51e541b9bc801afe949cac022cfe4 254 SUPERFAMILY SSF50331 166 249 2.34E-7 T 22-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal PP4_RS01985 33e51e541b9bc801afe949cac022cfe4 254 PIRSF PIRSF005763 2 254 6.0E-80 T 22-04-2016 IPR016462 Molybdate-dependent transcriptional regulator ModE GO:0006355|GO:0015689|GO:0030151 PP4_RS01985 33e51e541b9bc801afe949cac022cfe4 254 Gene3D G3DSA:2.40.50.100 174 243 7.1E-11 T 22-04-2016 PP4_RS01865 87ca7f1e12074601fe0a267ace1c6c65 895 Pfam PF13426 PAS domain 354 455 2.6E-13 T 22-04-2016 IPR000014 PAS domain PP4_RS01865 87ca7f1e12074601fe0a267ace1c6c65 895 Gene3D G3DSA:3.30.70.270 468 631 1.5E-46 T 22-04-2016 PP4_RS01865 87ca7f1e12074601fe0a267ace1c6c65 895 SMART SM00065 191 339 3.4E-9 T 22-04-2016 IPR003018 GAF domain GO:0005515 PP4_RS01865 87ca7f1e12074601fe0a267ace1c6c65 895 Pfam PF00563 EAL domain 641 876 2.3E-75 T 22-04-2016 IPR001633 EAL domain PP4_RS01865 87ca7f1e12074601fe0a267ace1c6c65 895 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 342 462 8.2E-14 T 22-04-2016 IPR000014 PAS domain PP4_RS01865 87ca7f1e12074601fe0a267ace1c6c65 895 SMART SM00091 342 409 3.2E-6 T 22-04-2016 IPR000014 PAS domain PP4_RS01865 87ca7f1e12074601fe0a267ace1c6c65 895 SMART SM00091 14 87 270.0 T 22-04-2016 IPR000014 PAS domain PP4_RS01865 87ca7f1e12074601fe0a267ace1c6c65 895 SUPERFAMILY SSF141868 640 889 7.06E-91 T 22-04-2016 IPR001633 EAL domain PP4_RS01865 87ca7f1e12074601fe0a267ace1c6c65 895 PANTHER PTHR33121:SF13 621 895 3.2E-83 T 22-04-2016 PP4_RS01865 87ca7f1e12074601fe0a267ace1c6c65 895 SMART SM00267 456 625 1.2E-53 T 22-04-2016 IPR000160 GGDEF domain PP4_RS01865 87ca7f1e12074601fe0a267ace1c6c65 895 Pfam PF01590 GAF domain 192 329 6.0E-12 T 22-04-2016 IPR003018 GAF domain GO:0005515 PP4_RS01865 87ca7f1e12074601fe0a267ace1c6c65 895 SMART SM00052 635 881 3.9E-117 T 22-04-2016 IPR001633 EAL domain PP4_RS01865 87ca7f1e12074601fe0a267ace1c6c65 895 SUPERFAMILY SSF55781 194 337 2.62E-20 T 22-04-2016 IPR029016 GAF domain-like PP4_RS01865 87ca7f1e12074601fe0a267ace1c6c65 895 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 463 624 1.7E-35 T 22-04-2016 IPR000160 GGDEF domain PP4_RS01865 87ca7f1e12074601fe0a267ace1c6c65 895 Pfam PF00990 Diguanylate cyclase, GGDEF domain 467 620 5.7E-38 T 22-04-2016 IPR000160 GGDEF domain PP4_RS01865 87ca7f1e12074601fe0a267ace1c6c65 895 SMART SM00086 414 456 0.0032 T 22-04-2016 IPR001610 PAC motif PP4_RS01865 87ca7f1e12074601fe0a267ace1c6c65 895 Gene3D G3DSA:3.30.450.20 352 455 5.6E-18 T 22-04-2016 PP4_RS01865 87ca7f1e12074601fe0a267ace1c6c65 895 PANTHER PTHR33121 621 895 3.2E-83 T 22-04-2016 PP4_RS01865 87ca7f1e12074601fe0a267ace1c6c65 895 Gene3D G3DSA:3.20.20.450 639 888 2.3E-100 T 22-04-2016 IPR001633 EAL domain PP4_RS01865 87ca7f1e12074601fe0a267ace1c6c65 895 SUPERFAMILY SSF55073 472 626 6.2E-41 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS01865 87ca7f1e12074601fe0a267ace1c6c65 895 Gene3D G3DSA:3.30.450.40 164 336 8.5E-19 T 22-04-2016 IPR029016 GAF domain-like PP4_RS01865 87ca7f1e12074601fe0a267ace1c6c65 895 SUPERFAMILY SSF55785 348 454 1.5E-18 T 22-04-2016 IPR000014 PAS domain PP4_RS05515 a6c07525b19a41b37a26134990dd2c9e 754 PANTHER PTHR10799:SF774 323 561 2.3E-80 T 22-04-2016 PP4_RS05515 a6c07525b19a41b37a26134990dd2c9e 754 PANTHER PTHR10799:SF774 74 220 2.3E-80 T 22-04-2016 PP4_RS05515 a6c07525b19a41b37a26134990dd2c9e 754 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 286 448 7.0E-47 T 22-04-2016 IPR000160 GGDEF domain PP4_RS05515 a6c07525b19a41b37a26134990dd2c9e 754 SUPERFAMILY SSF141868 472 715 1.83E-86 T 22-04-2016 IPR001633 EAL domain PP4_RS05515 a6c07525b19a41b37a26134990dd2c9e 754 SUPERFAMILY SSF55073 295 452 9.03E-52 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS05515 a6c07525b19a41b37a26134990dd2c9e 754 Pfam PF03707 Bacterial signalling protein N terminal repeat 134 186 1.5E-11 T 22-04-2016 IPR005330 MHYT domain PP4_RS05515 a6c07525b19a41b37a26134990dd2c9e 754 Pfam PF03707 Bacterial signalling protein N terminal repeat 73 124 1.1E-13 T 22-04-2016 IPR005330 MHYT domain PP4_RS05515 a6c07525b19a41b37a26134990dd2c9e 754 SMART SM00267 279 450 8.2E-68 T 22-04-2016 IPR000160 GGDEF domain PP4_RS05515 a6c07525b19a41b37a26134990dd2c9e 754 SMART SM00052 460 707 1.4E-107 T 22-04-2016 IPR001633 EAL domain PP4_RS05515 a6c07525b19a41b37a26134990dd2c9e 754 Pfam PF00990 Diguanylate cyclase, GGDEF domain 290 445 4.5E-51 T 22-04-2016 IPR000160 GGDEF domain PP4_RS05515 a6c07525b19a41b37a26134990dd2c9e 754 Gene3D G3DSA:3.30.70.270 292 457 2.6E-57 T 22-04-2016 PP4_RS05515 a6c07525b19a41b37a26134990dd2c9e 754 PANTHER PTHR10799 323 561 2.3E-80 T 22-04-2016 PP4_RS05515 a6c07525b19a41b37a26134990dd2c9e 754 PANTHER PTHR10799 74 220 2.3E-80 T 22-04-2016 PP4_RS05515 a6c07525b19a41b37a26134990dd2c9e 754 Gene3D G3DSA:3.20.20.450 463 714 1.3E-95 T 22-04-2016 IPR001633 EAL domain PP4_RS05515 a6c07525b19a41b37a26134990dd2c9e 754 Pfam PF00563 EAL domain 466 702 2.3E-73 T 22-04-2016 IPR001633 EAL domain PP4_RS27375 a781ffcf88ae1880cc19ce47b727c285 286 PRINTS PR00126 ATP synthase gamma subunit signature 73 92 4.8E-37 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 PP4_RS27375 a781ffcf88ae1880cc19ce47b727c285 286 PRINTS PR00126 ATP synthase gamma subunit signature 233 252 4.8E-37 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 PP4_RS27375 a781ffcf88ae1880cc19ce47b727c285 286 PRINTS PR00126 ATP synthase gamma subunit signature 166 183 4.8E-37 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 PP4_RS27375 a781ffcf88ae1880cc19ce47b727c285 286 PRINTS PR00126 ATP synthase gamma subunit signature 264 285 4.8E-37 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 PP4_RS27375 a781ffcf88ae1880cc19ce47b727c285 286 Gene3D G3DSA:1.10.287.80 235 281 8.9E-31 T 22-04-2016 PP4_RS27375 a781ffcf88ae1880cc19ce47b727c285 286 SUPERFAMILY SSF52943 2 286 2.35E-94 T 22-04-2016 IPR023633 ATPase, F1 complex, gamma subunit domain PP4_RS27375 a781ffcf88ae1880cc19ce47b727c285 286 Gene3D G3DSA:3.40.1380.10 64 191 6.8E-43 T 22-04-2016 PP4_RS27375 a781ffcf88ae1880cc19ce47b727c285 286 Gene3D G3DSA:1.10.287.80 19 60 8.9E-38 T 22-04-2016 PP4_RS27375 a781ffcf88ae1880cc19ce47b727c285 286 Gene3D G3DSA:1.10.287.80 201 234 8.9E-38 T 22-04-2016 PP4_RS27375 a781ffcf88ae1880cc19ce47b727c285 286 ProSitePatterns PS00153 ATP synthase gamma subunit signature. 272 285 - T 22-04-2016 IPR023632 ATPase, F1 complex, gamma subunit conserved site PP4_RS27375 a781ffcf88ae1880cc19ce47b727c285 286 Hamap MF_00815 ATP synthase gamma chain [atpG]. 1 286 36.526 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 PP4_RS27375 a781ffcf88ae1880cc19ce47b727c285 286 PANTHER PTHR11693 1 286 1.4E-127 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 PP4_RS27375 a781ffcf88ae1880cc19ce47b727c285 286 TIGRFAM TIGR01146 ATPsyn_F1gamma: ATP synthase F1, gamma subunit 1 286 6.7E-107 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 PP4_RS27375 a781ffcf88ae1880cc19ce47b727c285 286 Pfam PF00231 ATP synthase 5 285 7.3E-92 T 22-04-2016 IPR000131 ATPase, F1 complex, gamma subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 PP4_RS05705 157a052618f314807ca2d5a0b3f1a1f4 959 PRINTS PR01183 Ribonucleotide reductase large chain signature 581 592 1.3E-45 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PP4_RS05705 157a052618f314807ca2d5a0b3f1a1f4 959 PRINTS PR01183 Ribonucleotide reductase large chain signature 656 678 1.3E-45 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PP4_RS05705 157a052618f314807ca2d5a0b3f1a1f4 959 PRINTS PR01183 Ribonucleotide reductase large chain signature 446 465 1.3E-45 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PP4_RS05705 157a052618f314807ca2d5a0b3f1a1f4 959 PRINTS PR01183 Ribonucleotide reductase large chain signature 760 787 1.3E-45 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PP4_RS05705 157a052618f314807ca2d5a0b3f1a1f4 959 PRINTS PR01183 Ribonucleotide reductase large chain signature 618 641 1.3E-45 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PP4_RS05705 157a052618f314807ca2d5a0b3f1a1f4 959 PRINTS PR01183 Ribonucleotide reductase large chain signature 684 707 1.3E-45 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PP4_RS05705 157a052618f314807ca2d5a0b3f1a1f4 959 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 294 365 1.3E-21 T 22-04-2016 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 PP4_RS05705 157a052618f314807ca2d5a0b3f1a1f4 959 Gene3D G3DSA:3.20.70.20 760 805 1.5E-81 T 22-04-2016 PP4_RS05705 157a052618f314807ca2d5a0b3f1a1f4 959 Gene3D G3DSA:3.20.70.20 866 907 1.5E-81 T 22-04-2016 PP4_RS05705 157a052618f314807ca2d5a0b3f1a1f4 959 Gene3D G3DSA:3.20.70.20 547 704 1.5E-81 T 22-04-2016 PP4_RS05705 157a052618f314807ca2d5a0b3f1a1f4 959 Gene3D G3DSA:3.20.70.20 283 492 1.5E-81 T 22-04-2016 PP4_RS05705 157a052618f314807ca2d5a0b3f1a1f4 959 ProSitePatterns PS00089 Ribonucleotide reductase large subunit signature. 750 771 - T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PP4_RS05705 157a052618f314807ca2d5a0b3f1a1f4 959 Pfam PF03477 ATP cone domain 33 129 6.1E-19 T 22-04-2016 IPR005144 ATP-cone domain PP4_RS05705 157a052618f314807ca2d5a0b3f1a1f4 959 Pfam PF03477 ATP cone domain 150 233 5.4E-7 T 22-04-2016 IPR005144 ATP-cone domain PP4_RS05705 157a052618f314807ca2d5a0b3f1a1f4 959 TIGRFAM TIGR02506 NrdE_NrdA: ribonucleoside-diphosphate reductase, alpha subunit 297 907 5.3E-214 T 22-04-2016 IPR013346 Ribonucleotide reductase, class I , alpha subunit GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 PP4_RS05705 157a052618f314807ca2d5a0b3f1a1f4 959 Pfam PF02867 Ribonucleotide reductase, barrel domain 371 905 5.2E-180 T 22-04-2016 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PP4_RS05705 157a052618f314807ca2d5a0b3f1a1f4 959 PANTHER PTHR11573:SF6 150 959 0.0 T 22-04-2016 PP4_RS05705 157a052618f314807ca2d5a0b3f1a1f4 959 SUPERFAMILY SSF48168 154 369 1.15E-62 T 22-04-2016 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|UniPathway: UPA00326 PP4_RS05705 157a052618f314807ca2d5a0b3f1a1f4 959 SUPERFAMILY SSF51998 840 907 4.58E-180 T 22-04-2016 PP4_RS05705 157a052618f314807ca2d5a0b3f1a1f4 959 SUPERFAMILY SSF51998 370 809 4.58E-180 T 22-04-2016 PP4_RS05705 157a052618f314807ca2d5a0b3f1a1f4 959 PANTHER PTHR11573 150 959 0.0 T 22-04-2016 PP4_RS18015 0e56eca46ec62bb36b4b349e4cacda63 295 Pfam PF00892 EamA-like transporter family 150 280 1.0E-15 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS18015 0e56eca46ec62bb36b4b349e4cacda63 295 PANTHER PTHR22911 11 289 1.6E-98 T 22-04-2016 PP4_RS18015 0e56eca46ec62bb36b4b349e4cacda63 295 SUPERFAMILY SSF103481 185 282 3.01E-11 T 22-04-2016 PP4_RS18015 0e56eca46ec62bb36b4b349e4cacda63 295 SUPERFAMILY SSF103481 47 140 4.58E-7 T 22-04-2016 PP4_RS18015 0e56eca46ec62bb36b4b349e4cacda63 295 PANTHER PTHR22911:SF37 11 289 1.6E-98 T 22-04-2016 PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 Gene3D G3DSA:3.40.50.2300 679 791 2.4E-28 T 22-04-2016 PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 SMART SM00388 427 495 5.6E-9 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 SMART SM00448 6 118 7.0E-12 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 SMART SM00448 681 787 4.5E-21 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 537 656 3.1E-15 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 PANTHER PTHR24423 118 389 2.8E-160 T 22-04-2016 PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 PANTHER PTHR24423 411 791 2.8E-160 T 22-04-2016 PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 Gene3D G3DSA:3.30.565.10 492 659 9.7E-32 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 SMART SM00091 283 349 0.003 T 22-04-2016 IPR000014 PAS domain PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 SMART SM00091 143 210 2.0 T 22-04-2016 IPR000014 PAS domain PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 PANTHER PTHR24423:SF438 118 389 2.8E-160 T 22-04-2016 PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 PANTHER PTHR24423:SF438 411 791 2.8E-160 T 22-04-2016 PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 Pfam PF00512 His Kinase A (phospho-acceptor) domain 428 493 2.5E-8 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 Gene3D G3DSA:3.30.450.20 257 389 3.5E-16 T 22-04-2016 PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 Pfam PF08448 PAS fold 290 392 8.5E-14 T 22-04-2016 IPR013656 PAS fold-4 PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 286 394 8.8E-8 T 22-04-2016 IPR000014 PAS domain PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 Gene3D G3DSA:1.10.287.130 422 491 1.3E-5 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 Gene3D G3DSA:3.40.50.2300 4 138 2.0E-20 T 22-04-2016 PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 SMART SM00086 355 391 40.0 T 22-04-2016 IPR001610 PAC motif PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 SMART SM00086 218 260 0.19 T 22-04-2016 IPR001610 PAC motif PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 SUPERFAMILY SSF55785 130 257 1.92E-12 T 22-04-2016 IPR000014 PAS domain PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 SUPERFAMILY SSF52172 679 792 4.84E-27 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 Pfam PF08447 PAS fold 167 253 2.1E-8 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 Gene3D G3DSA:3.30.450.20 139 256 2.0E-19 T 22-04-2016 PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 SMART SM00387 536 658 3.6E-24 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 SUPERFAMILY SSF55874 485 658 2.75E-35 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 SUPERFAMILY SSF47384 415 492 4.71E-11 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 SUPERFAMILY SSF55785 290 394 8.86E-14 T 22-04-2016 IPR000014 PAS domain PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 SUPERFAMILY SSF52172 4 155 1.17E-22 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 PRINTS PR00344 Bacterial sensor protein C-terminal signature 605 615 3.9E-14 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 PRINTS PR00344 Bacterial sensor protein C-terminal signature 618 636 3.9E-14 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 PRINTS PR00344 Bacterial sensor protein C-terminal signature 587 601 3.9E-14 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 PRINTS PR00344 Bacterial sensor protein C-terminal signature 642 655 3.9E-14 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 Pfam PF00072 Response regulator receiver domain 683 786 1.8E-17 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS17405 16b65d6d49fe0d049cb37b124388ba6a 795 Pfam PF00072 Response regulator receiver domain 9 116 3.9E-11 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS20850 9686b5561488473f66beb5f73f20299a 372 Pfam PF03641 Possible lysine decarboxylase 127 261 2.0E-27 T 22-04-2016 IPR031100 LOG family PP4_RS20850 9686b5561488473f66beb5f73f20299a 372 Gene3D G3DSA:3.40.50.450 62 348 8.1E-71 T 22-04-2016 PP4_RS20850 9686b5561488473f66beb5f73f20299a 372 SUPERFAMILY SSF102405 75 261 7.63E-48 T 22-04-2016 PP4_RS20850 9686b5561488473f66beb5f73f20299a 372 PANTHER PTHR31223 29 305 7.6E-129 T 22-04-2016 PP4_RS20850 9686b5561488473f66beb5f73f20299a 372 PANTHER PTHR31223:SF1 29 305 7.6E-129 T 22-04-2016 PP4_RS05140 1081831dd5b06788562a7a9967fb94fc 244 PIRSF PIRSF039085 1 243 1.3E-102 T 22-04-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 PP4_RS05140 1081831dd5b06788562a7a9967fb94fc 244 Gene3D G3DSA:3.40.50.300 1 229 3.9E-79 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS05140 1081831dd5b06788562a7a9967fb94fc 244 PANTHER PTHR24220 3 244 1.5E-181 T 22-04-2016 PP4_RS05140 1081831dd5b06788562a7a9967fb94fc 244 Pfam PF00005 ABC transporter 17 165 1.3E-34 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS05140 1081831dd5b06788562a7a9967fb94fc 244 PANTHER PTHR24220:SF317 3 244 1.5E-181 T 22-04-2016 IPR030206 Glutamate/aspartate transport ATP-binding protein GltL/AatP GO:0005524|GO:0006865|GO:0043190 PP4_RS05140 1081831dd5b06788562a7a9967fb94fc 244 SUPERFAMILY SSF52540 1 227 1.94E-75 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS05140 1081831dd5b06788562a7a9967fb94fc 244 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS05140 1081831dd5b06788562a7a9967fb94fc 244 SMART SM00382 26 213 1.7E-17 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS10555 4594e3524cbbf854a4173484eeab3b4d 528 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 191 324 4.1E-16 T 22-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 PP4_RS10555 4594e3524cbbf854a4173484eeab3b4d 528 PANTHER PTHR18968:SF133 3 527 1.2E-240 T 22-04-2016 PP4_RS10555 4594e3524cbbf854a4173484eeab3b4d 528 PANTHER PTHR18968 3 527 1.2E-240 T 22-04-2016 PP4_RS10555 4594e3524cbbf854a4173484eeab3b4d 528 SUPERFAMILY SSF52518 3 169 2.92E-41 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS10555 4594e3524cbbf854a4173484eeab3b4d 528 SUPERFAMILY SSF52518 353 525 2.68E-48 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS10555 4594e3524cbbf854a4173484eeab3b4d 528 Gene3D G3DSA:3.40.50.1220 185 337 3.3E-42 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain PP4_RS10555 4594e3524cbbf854a4173484eeab3b4d 528 Gene3D G3DSA:3.40.50.970 347 524 1.7E-49 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS10555 4594e3524cbbf854a4173484eeab3b4d 528 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 3 167 3.4E-43 T 22-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 PP4_RS10555 4594e3524cbbf854a4173484eeab3b4d 528 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 411 430 - T 22-04-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 PP4_RS10555 4594e3524cbbf854a4173484eeab3b4d 528 SUPERFAMILY SSF52467 185 341 1.31E-61 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain PP4_RS10555 4594e3524cbbf854a4173484eeab3b4d 528 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 382 521 1.5E-30 T 22-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 PP4_RS10555 4594e3524cbbf854a4173484eeab3b4d 528 Gene3D G3DSA:3.40.50.970 3 168 7.5E-45 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS08450 d0c8bfd2ef43ee4de90ab301cd1f2e89 607 SUPERFAMILY SSF46600 190 242 6.02E-13 T 22-04-2016 IPR001943 UVR domain GO:0005515 PP4_RS08450 d0c8bfd2ef43ee4de90ab301cd1f2e89 607 Pfam PF02151 UvrB/uvrC motif 207 237 7.1E-9 T 22-04-2016 IPR001943 UVR domain GO:0005515 PP4_RS08450 d0c8bfd2ef43ee4de90ab301cd1f2e89 607 Hamap MF_00203 UvrABC system protein C [uvrC]. 4 603 29.411 T 22-04-2016 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 PP4_RS08450 d0c8bfd2ef43ee4de90ab301cd1f2e89 607 SMART SM00278 552 571 5.7 T 22-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 PP4_RS08450 d0c8bfd2ef43ee4de90ab301cd1f2e89 607 SMART SM00278 584 603 4.8 T 22-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 PP4_RS08450 d0c8bfd2ef43ee4de90ab301cd1f2e89 607 Gene3D G3DSA:3.40.1440.10 18 97 1.1E-7 T 22-04-2016 IPR027299 GIY-YIG domain PP4_RS08450 d0c8bfd2ef43ee4de90ab301cd1f2e89 607 Gene3D G3DSA:1.10.150.20 552 605 3.5E-23 T 22-04-2016 PP4_RS08450 d0c8bfd2ef43ee4de90ab301cd1f2e89 607 SUPERFAMILY SSF82771 17 100 3.14E-22 T 22-04-2016 IPR000305 GIY-YIG nuclease superfamily PP4_RS08450 d0c8bfd2ef43ee4de90ab301cd1f2e89 607 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 383 538 4.5E-51 T 22-04-2016 IPR001162 UvrC family homology region PP4_RS08450 d0c8bfd2ef43ee4de90ab301cd1f2e89 607 Pfam PF14520 Helix-hairpin-helix domain 553 604 2.2E-11 T 22-04-2016 PP4_RS08450 d0c8bfd2ef43ee4de90ab301cd1f2e89 607 PANTHER PTHR30562:SF1 1 604 1.8E-268 T 22-04-2016 PP4_RS08450 d0c8bfd2ef43ee4de90ab301cd1f2e89 607 PANTHER PTHR30562 1 604 1.8E-268 T 22-04-2016 PP4_RS08450 d0c8bfd2ef43ee4de90ab301cd1f2e89 607 Gene3D G3DSA:4.10.860.10 182 242 1.3E-18 T 22-04-2016 IPR001943 UVR domain GO:0005515 PP4_RS08450 d0c8bfd2ef43ee4de90ab301cd1f2e89 607 TIGRFAM TIGR00194 uvrC: excinuclease ABC subunit C 11 585 1.8E-187 T 22-04-2016 IPR004791 UvrABC system, subunit C GO:0005737|GO:0006281|GO:0009380|GO:0009381 PP4_RS08450 d0c8bfd2ef43ee4de90ab301cd1f2e89 607 Pfam PF01541 GIY-YIG catalytic domain 19 93 6.0E-10 T 22-04-2016 IPR000305 GIY-YIG nuclease superfamily PP4_RS08450 d0c8bfd2ef43ee4de90ab301cd1f2e89 607 SMART SM00465 17 98 2.6E-23 T 22-04-2016 IPR000305 GIY-YIG nuclease superfamily PP4_RS08450 d0c8bfd2ef43ee4de90ab301cd1f2e89 607 SUPERFAMILY SSF47781 518 605 2.92E-22 T 22-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 PP4_RS23640 d968c8bf923dbcd3e09cb63d6af7a7d1 472 PANTHER PTHR33408 1 471 3.1E-122 T 22-04-2016 PP4_RS23640 d968c8bf923dbcd3e09cb63d6af7a7d1 472 Pfam PF05598 Transposase domain (DUF772) 55 117 7.2E-15 T 22-04-2016 IPR008490 Transposase InsH, N-terminal PP4_RS23640 d968c8bf923dbcd3e09cb63d6af7a7d1 472 Pfam PF01609 Transposase DDE domain 231 455 6.1E-15 T 22-04-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 PP4_RS23640 d968c8bf923dbcd3e09cb63d6af7a7d1 472 PANTHER PTHR33408:SF2 1 471 3.1E-122 T 22-04-2016 PP4_RS20885 d968c8bf923dbcd3e09cb63d6af7a7d1 472 PANTHER PTHR33408 1 471 3.1E-122 T 22-04-2016 PP4_RS20885 d968c8bf923dbcd3e09cb63d6af7a7d1 472 Pfam PF05598 Transposase domain (DUF772) 55 117 7.2E-15 T 22-04-2016 IPR008490 Transposase InsH, N-terminal PP4_RS20885 d968c8bf923dbcd3e09cb63d6af7a7d1 472 Pfam PF01609 Transposase DDE domain 231 455 6.1E-15 T 22-04-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 PP4_RS20885 d968c8bf923dbcd3e09cb63d6af7a7d1 472 PANTHER PTHR33408:SF2 1 471 3.1E-122 T 22-04-2016 PP4_RS08465 d968c8bf923dbcd3e09cb63d6af7a7d1 472 PANTHER PTHR33408 1 471 3.1E-122 T 22-04-2016 PP4_RS08465 d968c8bf923dbcd3e09cb63d6af7a7d1 472 Pfam PF05598 Transposase domain (DUF772) 55 117 7.2E-15 T 22-04-2016 IPR008490 Transposase InsH, N-terminal PP4_RS08465 d968c8bf923dbcd3e09cb63d6af7a7d1 472 Pfam PF01609 Transposase DDE domain 231 455 6.1E-15 T 22-04-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 PP4_RS08465 d968c8bf923dbcd3e09cb63d6af7a7d1 472 PANTHER PTHR33408:SF2 1 471 3.1E-122 T 22-04-2016 PP4_RS20500 d968c8bf923dbcd3e09cb63d6af7a7d1 472 PANTHER PTHR33408 1 471 3.1E-122 T 22-04-2016 PP4_RS20500 d968c8bf923dbcd3e09cb63d6af7a7d1 472 Pfam PF05598 Transposase domain (DUF772) 55 117 7.2E-15 T 22-04-2016 IPR008490 Transposase InsH, N-terminal PP4_RS20500 d968c8bf923dbcd3e09cb63d6af7a7d1 472 Pfam PF01609 Transposase DDE domain 231 455 6.1E-15 T 22-04-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 PP4_RS20500 d968c8bf923dbcd3e09cb63d6af7a7d1 472 PANTHER PTHR33408:SF2 1 471 3.1E-122 T 22-04-2016 PP4_RS22205 d968c8bf923dbcd3e09cb63d6af7a7d1 472 PANTHER PTHR33408 1 471 3.1E-122 T 22-04-2016 PP4_RS22205 d968c8bf923dbcd3e09cb63d6af7a7d1 472 Pfam PF05598 Transposase domain (DUF772) 55 117 7.2E-15 T 22-04-2016 IPR008490 Transposase InsH, N-terminal PP4_RS22205 d968c8bf923dbcd3e09cb63d6af7a7d1 472 Pfam PF01609 Transposase DDE domain 231 455 6.1E-15 T 22-04-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 PP4_RS22205 d968c8bf923dbcd3e09cb63d6af7a7d1 472 PANTHER PTHR33408:SF2 1 471 3.1E-122 T 22-04-2016 PP4_RS05470 d968c8bf923dbcd3e09cb63d6af7a7d1 472 PANTHER PTHR33408 1 471 3.1E-122 T 22-04-2016 PP4_RS05470 d968c8bf923dbcd3e09cb63d6af7a7d1 472 Pfam PF05598 Transposase domain (DUF772) 55 117 7.2E-15 T 22-04-2016 IPR008490 Transposase InsH, N-terminal PP4_RS05470 d968c8bf923dbcd3e09cb63d6af7a7d1 472 Pfam PF01609 Transposase DDE domain 231 455 6.1E-15 T 22-04-2016 IPR002559 Transposase, IS4-like GO:0003677|GO:0004803|GO:0006313 PP4_RS05470 d968c8bf923dbcd3e09cb63d6af7a7d1 472 PANTHER PTHR33408:SF2 1 471 3.1E-122 T 22-04-2016 PP4_RS26925 641ba23903985684cc00acb65c4f8608 51 ProSitePatterns PS00582 Ribosomal protein L33 signature. 17 36 - T 22-04-2016 IPR018264 Ribosomal protein L33, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS26925 641ba23903985684cc00acb65c4f8608 51 Pfam PF00471 Ribosomal protein L33 4 49 3.5E-18 T 22-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS26925 641ba23903985684cc00acb65c4f8608 51 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 2 51 6.9E-25 T 22-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS26925 641ba23903985684cc00acb65c4f8608 51 PANTHER PTHR15238 1 51 2.6E-24 T 22-04-2016 PP4_RS26925 641ba23903985684cc00acb65c4f8608 51 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 1 49 15.117 T 22-04-2016 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS26925 641ba23903985684cc00acb65c4f8608 51 SUPERFAMILY SSF57829 1 49 6.1E-19 T 22-04-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 PP4_RS17495 0c66e4a533faf9e50cdf32ca1b05c4b9 375 TIGRFAM TIGR01800 cit_synth_II: 2-methylcitrate synthase/citrate synthase II 11 375 5.6E-157 T 22-04-2016 IPR011278 2-methylcitrate synthase/citrate synthase type I GO:0005737|GO:0046912 PP4_RS17495 0c66e4a533faf9e50cdf32ca1b05c4b9 375 PIRSF PIRSF001369 3 375 1.4E-118 T 22-04-2016 IPR024176 Citrate synthase, bacterial-type UniPathway: UPA00223 PP4_RS17495 0c66e4a533faf9e50cdf32ca1b05c4b9 375 PANTHER PTHR11739 11 375 3.2E-167 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 PP4_RS17495 0c66e4a533faf9e50cdf32ca1b05c4b9 375 PANTHER PTHR11739:SF12 11 375 3.2E-167 T 22-04-2016 PP4_RS17495 0c66e4a533faf9e50cdf32ca1b05c4b9 375 PRINTS PR00143 Citrate synthase signature 176 191 9.0E-41 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 PP4_RS17495 0c66e4a533faf9e50cdf32ca1b05c4b9 375 PRINTS PR00143 Citrate synthase signature 308 324 9.0E-41 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 PP4_RS17495 0c66e4a533faf9e50cdf32ca1b05c4b9 375 PRINTS PR00143 Citrate synthase signature 328 342 9.0E-41 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 PP4_RS17495 0c66e4a533faf9e50cdf32ca1b05c4b9 375 PRINTS PR00143 Citrate synthase signature 126 139 9.0E-41 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 PP4_RS17495 0c66e4a533faf9e50cdf32ca1b05c4b9 375 PRINTS PR00143 Citrate synthase signature 251 271 9.0E-41 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 PP4_RS17495 0c66e4a533faf9e50cdf32ca1b05c4b9 375 PRINTS PR00143 Citrate synthase signature 198 226 9.0E-41 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 PP4_RS17495 0c66e4a533faf9e50cdf32ca1b05c4b9 375 Gene3D G3DSA:1.10.580.10 17 236 2.0E-78 T 22-04-2016 IPR016142 Citrate synthase-like, large alpha subdomain UniPathway: UPA00223 PP4_RS17495 0c66e4a533faf9e50cdf32ca1b05c4b9 375 ProSitePatterns PS00480 Citrate synthase signature. 258 270 - T 22-04-2016 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 UniPathway: UPA00223 PP4_RS17495 0c66e4a533faf9e50cdf32ca1b05c4b9 375 Gene3D G3DSA:1.10.230.10 237 322 3.1E-29 T 22-04-2016 IPR016143 Citrate synthase-like, small alpha subdomain PP4_RS17495 0c66e4a533faf9e50cdf32ca1b05c4b9 375 Pfam PF00285 Citrate synthase, C-terminal domain 11 357 1.9E-118 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 PP4_RS17495 0c66e4a533faf9e50cdf32ca1b05c4b9 375 SUPERFAMILY SSF48256 10 375 3.14E-130 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 PP4_RS00725 28fc19ec6c664c89b8925e333e0c099a 71 Pfam PF06568 Domain of unknown function (DUF1127) 27 61 1.8E-8 T 22-04-2016 IPR009506 Protein of unknown function DUF1127 PP4_RS12345 f2a216210cf855e1d0ee2cac7870df01 805 Gene3D G3DSA:2.170.130.10 148 266 1.3E-23 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS12345 f2a216210cf855e1d0ee2cac7870df01 805 PANTHER PTHR32552:SF14 144 805 1.3E-204 T 22-04-2016 IPR030149 TonB-dependent siderophore receptor FcuA/FatA GO:0004872|GO:0005506|GO:0009279|GO:0015891|GO:0016021 PP4_RS12345 f2a216210cf855e1d0ee2cac7870df01 805 PANTHER PTHR32552:SF14 106 111 1.3E-204 T 22-04-2016 IPR030149 TonB-dependent siderophore receptor FcuA/FatA GO:0004872|GO:0005506|GO:0009279|GO:0015891|GO:0016021 PP4_RS12345 f2a216210cf855e1d0ee2cac7870df01 805 Pfam PF07715 TonB-dependent Receptor Plug Domain 153 245 1.0E-12 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS12345 f2a216210cf855e1d0ee2cac7870df01 805 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 154 805 7.8E-114 T 22-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 PP4_RS12345 f2a216210cf855e1d0ee2cac7870df01 805 SMART SM00965 57 108 6.7E-12 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS12345 f2a216210cf855e1d0ee2cac7870df01 805 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 788 805 - T 22-04-2016 IPR010917 TonB-dependent receptor, conserved site PP4_RS12345 f2a216210cf855e1d0ee2cac7870df01 805 SUPERFAMILY SSF56935 146 805 7.69E-107 T 22-04-2016 PP4_RS12345 f2a216210cf855e1d0ee2cac7870df01 805 Pfam PF07660 Secretin and TonB N terminus short domain 59 107 5.6E-7 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS12345 f2a216210cf855e1d0ee2cac7870df01 805 PANTHER PTHR32552 144 805 1.3E-204 T 22-04-2016 PP4_RS12345 f2a216210cf855e1d0ee2cac7870df01 805 PANTHER PTHR32552 106 111 1.3E-204 T 22-04-2016 PP4_RS12345 f2a216210cf855e1d0ee2cac7870df01 805 Gene3D G3DSA:2.40.170.20 270 805 1.3E-104 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS12345 f2a216210cf855e1d0ee2cac7870df01 805 Pfam PF00593 TonB dependent receptor 569 803 1.9E-24 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS16795 476ee827e57e36508126dc3086760240 222 PANTHER PTHR10108 1 203 2.6E-13 T 22-04-2016 PP4_RS16795 476ee827e57e36508126dc3086760240 222 PANTHER PTHR10108:SF779 1 203 2.6E-13 T 22-04-2016 PP4_RS16795 476ee827e57e36508126dc3086760240 222 SUPERFAMILY SSF53335 22 211 2.76E-27 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS16795 476ee827e57e36508126dc3086760240 222 Pfam PF13489 Methyltransferase domain 41 158 3.8E-14 T 22-04-2016 PP4_RS16795 476ee827e57e36508126dc3086760240 222 Gene3D G3DSA:3.40.50.150 37 204 5.8E-25 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS00210 9aa7f393935606313f10b854de264942 430 Pfam PF08448 PAS fold 15 124 6.1E-22 T 22-04-2016 IPR013656 PAS fold-4 PP4_RS00210 9aa7f393935606313f10b854de264942 430 Pfam PF00158 Sigma-54 interaction domain 135 301 3.0E-62 T 22-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 PP4_RS00210 9aa7f393935606313f10b854de264942 430 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 221 236 - T 22-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PP4_RS00210 9aa7f393935606313f10b854de264942 430 SUPERFAMILY SSF46689 389 429 9.86E-6 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS00210 9aa7f393935606313f10b854de264942 430 Gene3D G3DSA:3.30.450.20 21 117 5.9E-9 T 22-04-2016 PP4_RS00210 9aa7f393935606313f10b854de264942 430 SUPERFAMILY SSF52540 135 375 2.48E-66 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS00210 9aa7f393935606313f10b854de264942 430 SMART SM00382 155 298 7.1E-9 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS00210 9aa7f393935606313f10b854de264942 430 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 410 430 4.9E-6 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS00210 9aa7f393935606313f10b854de264942 430 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 393 410 4.9E-6 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS00210 9aa7f393935606313f10b854de264942 430 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 159 172 - T 22-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 PP4_RS00210 9aa7f393935606313f10b854de264942 430 PANTHER PTHR32071 117 430 1.5E-132 T 22-04-2016 PP4_RS00210 9aa7f393935606313f10b854de264942 430 Gene3D G3DSA:3.40.50.300 132 307 3.6E-50 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS00210 9aa7f393935606313f10b854de264942 430 Gene3D G3DSA:1.10.10.60 396 425 3.9E-8 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS00210 9aa7f393935606313f10b854de264942 430 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 345 354 - T 22-04-2016 IPR025944 Sigma-54 interaction domain, conserved site PP4_RS00210 9aa7f393935606313f10b854de264942 430 Gene3D G3DSA:1.10.8.60 308 377 3.0E-20 T 22-04-2016 PP4_RS00210 9aa7f393935606313f10b854de264942 430 SUPERFAMILY SSF55785 15 117 2.09E-10 T 22-04-2016 IPR000014 PAS domain PP4_RS00210 9aa7f393935606313f10b854de264942 430 Pfam PF02954 Bacterial regulatory protein, Fis family 395 426 1.7E-8 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS04360 95aa7b1da49d35ea72c62a1a4360f8e7 911 Pfam PF07517 SecA DEAD-like domain 6 402 5.2E-130 T 22-04-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 PP4_RS04360 95aa7b1da49d35ea72c62a1a4360f8e7 911 Pfam PF07516 SecA Wing and Scaffold domain 617 830 1.3E-68 T 22-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 PP4_RS04360 95aa7b1da49d35ea72c62a1a4360f8e7 911 Pfam PF02810 SEC-C motif 891 909 2.0E-10 T 22-04-2016 IPR004027 SEC-C motif PP4_RS04360 95aa7b1da49d35ea72c62a1a4360f8e7 911 Gene3D G3DSA:3.40.50.300 417 619 5.5E-88 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS04360 95aa7b1da49d35ea72c62a1a4360f8e7 911 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 818 0.0 T 22-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 PP4_RS04360 95aa7b1da49d35ea72c62a1a4360f8e7 911 SUPERFAMILY SSF81886 620 840 4.58E-80 T 22-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 PP4_RS04360 95aa7b1da49d35ea72c62a1a4360f8e7 911 SUPERFAMILY SSF81886 887 899 4.58E-80 T 22-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 PP4_RS04360 95aa7b1da49d35ea72c62a1a4360f8e7 911 SMART SM00958 228 358 6.9E-72 T 22-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 PP4_RS04360 95aa7b1da49d35ea72c62a1a4360f8e7 911 PRINTS PR00906 SecA protein signature 101 115 5.6E-69 T 22-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 PP4_RS04360 95aa7b1da49d35ea72c62a1a4360f8e7 911 PRINTS PR00906 SecA protein signature 117 127 5.6E-69 T 22-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 PP4_RS04360 95aa7b1da49d35ea72c62a1a4360f8e7 911 PRINTS PR00906 SecA protein signature 376 393 5.6E-69 T 22-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 PP4_RS04360 95aa7b1da49d35ea72c62a1a4360f8e7 911 PRINTS PR00906 SecA protein signature 413 426 5.6E-69 T 22-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 PP4_RS04360 95aa7b1da49d35ea72c62a1a4360f8e7 911 PRINTS PR00906 SecA protein signature 170 190 5.6E-69 T 22-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 PP4_RS04360 95aa7b1da49d35ea72c62a1a4360f8e7 911 PRINTS PR00906 SecA protein signature 63 87 5.6E-69 T 22-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 PP4_RS04360 95aa7b1da49d35ea72c62a1a4360f8e7 911 PRINTS PR00906 SecA protein signature 339 361 5.6E-69 T 22-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 PP4_RS04360 95aa7b1da49d35ea72c62a1a4360f8e7 911 SUPERFAMILY SSF81767 227 368 1.44E-39 T 22-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 PP4_RS04360 95aa7b1da49d35ea72c62a1a4360f8e7 911 Gene3D G3DSA:1.10.3060.10 648 831 9.4E-60 T 22-04-2016 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 PP4_RS04360 95aa7b1da49d35ea72c62a1a4360f8e7 911 Pfam PF01043 SecA preprotein cross-linking domain 233 358 2.5E-33 T 22-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 PP4_RS04360 95aa7b1da49d35ea72c62a1a4360f8e7 911 Hamap MF_01382 Protein translocase subunit SecA [secA]. 5 832 19.75 T 22-04-2016 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 PP4_RS04360 95aa7b1da49d35ea72c62a1a4360f8e7 911 PANTHER PTHR30612 550 911 0.0 T 22-04-2016 PP4_RS04360 95aa7b1da49d35ea72c62a1a4360f8e7 911 PANTHER PTHR30612 5 520 0.0 T 22-04-2016 PP4_RS04360 95aa7b1da49d35ea72c62a1a4360f8e7 911 Gene3D G3DSA:3.90.1440.10 230 368 2.4E-41 T 22-04-2016 IPR011130 SecA preprotein, cross-linking domain GO:0016020|GO:0017038 PP4_RS04360 95aa7b1da49d35ea72c62a1a4360f8e7 911 SMART SM00957 6 402 5.2E-298 T 22-04-2016 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 PP4_RS04360 95aa7b1da49d35ea72c62a1a4360f8e7 911 SUPERFAMILY SSF52540 368 415 9.64E-84 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS04360 95aa7b1da49d35ea72c62a1a4360f8e7 911 SUPERFAMILY SSF52540 5 228 9.64E-84 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS04360 95aa7b1da49d35ea72c62a1a4360f8e7 911 Gene3D G3DSA:3.40.50.300 369 416 4.6E-125 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS04360 95aa7b1da49d35ea72c62a1a4360f8e7 911 Gene3D G3DSA:3.40.50.300 3 228 4.6E-125 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS04360 95aa7b1da49d35ea72c62a1a4360f8e7 911 SUPERFAMILY SSF52540 417 618 5.33E-57 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS13385 7bc510d99687d5344ff528c5e5c0950b 221 PANTHER PTHR33254 1 207 1.1E-42 T 22-04-2016 PP4_RS13385 7bc510d99687d5344ff528c5e5c0950b 221 SUPERFAMILY SSF89562 14 182 1.03E-41 T 22-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein PP4_RS13385 7bc510d99687d5344ff528c5e5c0950b 221 PANTHER PTHR33254:SF5 1 207 1.1E-42 T 22-04-2016 PP4_RS13385 7bc510d99687d5344ff528c5e5c0950b 221 Gene3D G3DSA:3.50.30.40 15 180 1.1E-44 T 22-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein PP4_RS13385 7bc510d99687d5344ff528c5e5c0950b 221 Pfam PF03737 Demethylmenaquinone methyltransferase 17 171 5.1E-35 T 22-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein PP4_RS00260 2701293adc12320438bd0961a2a89c20 315 SUPERFAMILY SSF55681 10 291 6.22E-136 T 22-04-2016 PP4_RS00260 2701293adc12320438bd0961a2a89c20 315 Gene3D G3DSA:3.30.930.10 7 216 1.3E-106 T 22-04-2016 PP4_RS00260 2701293adc12320438bd0961a2a89c20 315 Gene3D G3DSA:1.20.58.180 217 298 6.6E-37 T 22-04-2016 PP4_RS00260 2701293adc12320438bd0961a2a89c20 315 PANTHER PTHR30075 8 314 3.3E-260 T 22-04-2016 PP4_RS00260 2701293adc12320438bd0961a2a89c20 315 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 115 139 1.0E-68 T 22-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 PP4_RS00260 2701293adc12320438bd0961a2a89c20 315 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 63 78 1.0E-68 T 22-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 PP4_RS00260 2701293adc12320438bd0961a2a89c20 315 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 164 179 1.0E-68 T 22-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 PP4_RS00260 2701293adc12320438bd0961a2a89c20 315 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 84 104 1.0E-68 T 22-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 PP4_RS00260 2701293adc12320438bd0961a2a89c20 315 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 141 161 1.0E-68 T 22-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 PP4_RS00260 2701293adc12320438bd0961a2a89c20 315 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 253 269 1.0E-68 T 22-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 PP4_RS00260 2701293adc12320438bd0961a2a89c20 315 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 9 293 61.381 T 22-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 PP4_RS00260 2701293adc12320438bd0961a2a89c20 315 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 11 291 6.6E-152 T 22-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 PP4_RS00260 2701293adc12320438bd0961a2a89c20 315 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 10 299 2.2E-163 T 22-04-2016 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 PP4_RS07315 ca9e62f662bc559ce42edd7617e5607f 246 PANTHER PTHR30433:SF3 2 246 1.4E-118 T 22-04-2016 IPR022522 Flagellar motor stator, MotA PP4_RS07315 ca9e62f662bc559ce42edd7617e5607f 246 PANTHER PTHR30433 2 246 1.4E-118 T 22-04-2016 PP4_RS07315 ca9e62f662bc559ce42edd7617e5607f 246 Pfam PF01618 MotA/TolQ/ExbB proton channel family 105 219 1.1E-26 T 22-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 PP4_RS27380 5a08157f021adefc484f3f20c4142e22 514 TIGRFAM TIGR00962 atpA: ATP synthase F1, alpha subunit 4 513 2.4E-250 T 22-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PP4_RS27380 5a08157f021adefc484f3f20c4142e22 514 Pfam PF00306 ATP synthase alpha/beta chain, C terminal domain 383 508 1.2E-44 T 22-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PP4_RS27380 5a08157f021adefc484f3f20c4142e22 514 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 150 376 1.3E-71 T 22-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PP4_RS27380 5a08157f021adefc484f3f20c4142e22 514 SUPERFAMILY SSF52540 97 382 1.84E-91 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS27380 5a08157f021adefc484f3f20c4142e22 514 PIRSF PIRSF039088 2 514 7.1E-233 T 22-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PP4_RS27380 5a08157f021adefc484f3f20c4142e22 514 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 29 93 5.6E-15 T 22-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PP4_RS27380 5a08157f021adefc484f3f20c4142e22 514 Gene3D G3DSA:2.40.30.20 3 94 4.2E-33 T 22-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PP4_RS27380 5a08157f021adefc484f3f20c4142e22 514 PANTHER PTHR15184 1 497 5.5E-294 T 22-04-2016 PP4_RS27380 5a08157f021adefc484f3f20c4142e22 514 Gene3D G3DSA:3.40.50.300 95 383 3.8E-110 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS27380 5a08157f021adefc484f3f20c4142e22 514 Gene3D G3DSA:1.20.150.20 384 511 9.0E-49 T 22-04-2016 PP4_RS27380 5a08157f021adefc484f3f20c4142e22 514 SUPERFAMILY SSF47917 384 512 1.07E-45 T 22-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PP4_RS27380 5a08157f021adefc484f3f20c4142e22 514 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 367 376 - T 22-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PP4_RS27380 5a08157f021adefc484f3f20c4142e22 514 PANTHER PTHR15184:SF3 1 497 5.5E-294 T 22-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PP4_RS27380 5a08157f021adefc484f3f20c4142e22 514 Hamap MF_01346 ATP synthase subunit alpha [atpA]. 2 513 49.723 T 22-04-2016 IPR005294 ATPase, F1 complex, alpha subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PP4_RS27380 5a08157f021adefc484f3f20c4142e22 514 SUPERFAMILY SSF50615 11 95 1.29E-28 T 22-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PP4_RS10470 24af9f393203fdf8927f8b9c74d73f8a 251 Pfam PF00106 short chain dehydrogenase 12 190 9.7E-46 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS10470 24af9f393203fdf8927f8b9c74d73f8a 251 PANTHER PTHR24322 150 181 5.7E-42 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS10470 24af9f393203fdf8927f8b9c74d73f8a 251 PANTHER PTHR24322 15 134 5.7E-42 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS10470 24af9f393203fdf8927f8b9c74d73f8a 251 Gene3D G3DSA:3.40.50.720 12 225 1.0E-57 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS10470 24af9f393203fdf8927f8b9c74d73f8a 251 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PP4_RS10470 24af9f393203fdf8927f8b9c74d73f8a 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 3.6E-6 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS10470 24af9f393203fdf8927f8b9c74d73f8a 251 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 3.6E-6 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS10470 24af9f393203fdf8927f8b9c74d73f8a 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 2.9E-23 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS10470 24af9f393203fdf8927f8b9c74d73f8a 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 2.9E-23 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS10470 24af9f393203fdf8927f8b9c74d73f8a 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 2.9E-23 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS10470 24af9f393203fdf8927f8b9c74d73f8a 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 2.9E-23 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS10470 24af9f393203fdf8927f8b9c74d73f8a 251 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 2.9E-23 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS10470 24af9f393203fdf8927f8b9c74d73f8a 251 SUPERFAMILY SSF51735 11 225 4.1E-57 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS00010 418935d26ceee6dadbe72909db304147 367 PIRSF PIRSF000804 1 367 2.6E-124 T 22-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS00010 418935d26ceee6dadbe72909db304147 367 SMART SM00480 17 363 4.4E-175 T 22-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS00010 418935d26ceee6dadbe72909db304147 367 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 247 366 5.0E-43 T 22-04-2016 IPR022635 DNA polymerase III, beta chain, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS00010 418935d26ceee6dadbe72909db304147 367 Gene3D G3DSA:3.10.150.10 250 367 2.5E-39 T 22-04-2016 PP4_RS00010 418935d26ceee6dadbe72909db304147 367 Pfam PF02767 DNA polymerase III beta subunit, central domain 130 244 1.4E-42 T 22-04-2016 IPR022637 DNA polymerase III, beta chain, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS00010 418935d26ceee6dadbe72909db304147 367 SUPERFAMILY SSF55979 246 367 1.32E-37 T 22-04-2016 PP4_RS00010 418935d26ceee6dadbe72909db304147 367 SUPERFAMILY SSF55979 1 120 4.4E-30 T 22-04-2016 PP4_RS00010 418935d26ceee6dadbe72909db304147 367 SUPERFAMILY SSF55979 129 245 5.83E-30 T 22-04-2016 PP4_RS00010 418935d26ceee6dadbe72909db304147 367 PANTHER PTHR30478 2 367 1.5E-146 T 22-04-2016 PP4_RS00010 418935d26ceee6dadbe72909db304147 367 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 367 1.2E-111 T 22-04-2016 IPR001001 DNA polymerase III, beta chain GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS00010 418935d26ceee6dadbe72909db304147 367 Gene3D G3DSA:3.10.150.10 128 249 5.3E-38 T 22-04-2016 PP4_RS00010 418935d26ceee6dadbe72909db304147 367 Gene3D G3DSA:3.10.150.10 1 120 2.2E-35 T 22-04-2016 PP4_RS00010 418935d26ceee6dadbe72909db304147 367 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 119 1.3E-43 T 22-04-2016 IPR022634 DNA polymerase III, beta chain, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS20985 1e5c4177ab935ee17172e80735a25604 258 Gene3D G3DSA:2.160.10.10 3 189 1.1E-49 T 22-04-2016 PP4_RS20985 1e5c4177ab935ee17172e80735a25604 258 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 176 256 9.7E-26 T 22-04-2016 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 PP4_RS20985 1e5c4177ab935ee17172e80735a25604 258 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 4 32 - T 22-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 PP4_RS20985 1e5c4177ab935ee17172e80735a25604 258 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 4 256 1.2E-93 T 22-04-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 PP4_RS20985 1e5c4177ab935ee17172e80735a25604 258 PANTHER PTHR23416:SF8 1 250 9.4E-125 T 22-04-2016 PP4_RS20985 1e5c4177ab935ee17172e80735a25604 258 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 105 137 7.0E-8 T 22-04-2016 IPR001451 Hexapeptide repeat PP4_RS20985 1e5c4177ab935ee17172e80735a25604 258 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 14 48 1.5E-8 T 22-04-2016 IPR001451 Hexapeptide repeat PP4_RS20985 1e5c4177ab935ee17172e80735a25604 258 Gene3D G3DSA:1.20.1180.10 193 258 2.7E-25 T 22-04-2016 IPR029098 Udp N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 PP4_RS20985 1e5c4177ab935ee17172e80735a25604 258 PANTHER PTHR23416 1 250 9.4E-125 T 22-04-2016 PP4_RS20985 1e5c4177ab935ee17172e80735a25604 258 SUPERFAMILY SSF51161 3 258 6.05E-78 T 22-04-2016 IPR011004 Trimeric LpxA-like PP4_RS20985 1e5c4177ab935ee17172e80735a25604 258 PIRSF PIRSF000456 1 258 6.8E-98 T 22-04-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 PP4_RS20985 1e5c4177ab935ee17172e80735a25604 258 Hamap MF_00387 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [lpxA]. 1 258 44.164 T 22-04-2016 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00540+2.3.1.129|KEGG: 00620+2.3.1.12|UniPathway: UPA00359 PP4_RS09470 856e4e659d3333a2a6cdb9d384e55420 520 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 343 363 - T 22-04-2016 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 PP4_RS09470 856e4e659d3333a2a6cdb9d384e55420 520 Gene3D G3DSA:3.40.30.10 103 195 1.0E-36 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS09470 856e4e659d3333a2a6cdb9d384e55420 520 Gene3D G3DSA:3.50.50.60 212 338 1.1E-23 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS09470 856e4e659d3333a2a6cdb9d384e55420 520 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 476 494 4.9E-67 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PP4_RS09470 856e4e659d3333a2a6cdb9d384e55420 520 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 403 419 4.9E-67 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PP4_RS09470 856e4e659d3333a2a6cdb9d384e55420 520 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 336 348 4.9E-67 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PP4_RS09470 856e4e659d3333a2a6cdb9d384e55420 520 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 213 235 4.9E-67 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PP4_RS09470 856e4e659d3333a2a6cdb9d384e55420 520 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 442 463 4.9E-67 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PP4_RS09470 856e4e659d3333a2a6cdb9d384e55420 520 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 314 322 4.9E-67 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PP4_RS09470 856e4e659d3333a2a6cdb9d384e55420 520 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 245 260 4.9E-67 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PP4_RS09470 856e4e659d3333a2a6cdb9d384e55420 520 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 351 375 4.9E-67 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PP4_RS09470 856e4e659d3333a2a6cdb9d384e55420 520 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 265 275 4.9E-67 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PP4_RS09470 856e4e659d3333a2a6cdb9d384e55420 520 SUPERFAMILY SSF52833 104 195 5.6E-22 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS09470 856e4e659d3333a2a6cdb9d384e55420 520 Gene3D G3DSA:3.40.30.10 1 93 6.5E-32 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS09470 856e4e659d3333a2a6cdb9d384e55420 520 Gene3D G3DSA:3.50.50.60 437 514 3.1E-15 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS09470 856e4e659d3333a2a6cdb9d384e55420 520 TIGRFAM TIGR03140 AhpF: alkyl hydroperoxide reductase subunit F 1 515 3.0E-243 T 22-04-2016 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0016651|GO:0050660|GO:0051287|GO:0055114 PP4_RS09470 856e4e659d3333a2a6cdb9d384e55420 520 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 212 502 9.8E-48 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS09470 856e4e659d3333a2a6cdb9d384e55420 520 PANTHER PTHR22912:SF107 198 512 2.1E-204 T 22-04-2016 PP4_RS09470 856e4e659d3333a2a6cdb9d384e55420 520 SUPERFAMILY SSF51905 203 512 5.06E-53 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS09470 856e4e659d3333a2a6cdb9d384e55420 520 Pfam PF13192 Thioredoxin domain 124 194 1.6E-8 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS09470 856e4e659d3333a2a6cdb9d384e55420 520 PANTHER PTHR22912 198 512 2.1E-204 T 22-04-2016 PP4_RS09470 856e4e659d3333a2a6cdb9d384e55420 520 SUPERFAMILY SSF52833 1 100 2.8E-28 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS09470 856e4e659d3333a2a6cdb9d384e55420 520 PIRSF PIRSF000238 1 519 3.7E-268 T 22-04-2016 IPR012081 Alkyl hydroperoxide reductase subunit F GO:0000302|GO:0008785|GO:0016651|GO:0050660|GO:0051287|GO:0055114 PP4_RS09470 856e4e659d3333a2a6cdb9d384e55420 520 Gene3D G3DSA:3.50.50.60 339 436 5.0E-31 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS09470 856e4e659d3333a2a6cdb9d384e55420 520 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 466 488 1.0E-41 T 22-04-2016 PP4_RS09470 856e4e659d3333a2a6cdb9d384e55420 520 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 214 233 1.0E-41 T 22-04-2016 PP4_RS09470 856e4e659d3333a2a6cdb9d384e55420 520 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 440 456 1.0E-41 T 22-04-2016 PP4_RS09470 856e4e659d3333a2a6cdb9d384e55420 520 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 355 373 1.0E-41 T 22-04-2016 PP4_RS09470 856e4e659d3333a2a6cdb9d384e55420 520 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 313 331 1.0E-41 T 22-04-2016 PP4_RS04120 ac6b7c24feeca02c08ad2b2f2f61a13f 489 SMART SM00487 119 326 1.0E-52 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PP4_RS04120 ac6b7c24feeca02c08ad2b2f2f61a13f 489 Hamap MF_00661 ATP-dependent RNA helicase RhlB [rhlB]. 99 481 53.221 T 22-04-2016 IPR023554 ATP-dependent RNA helicase RhlB type GO:0004004 PP4_RS04120 ac6b7c24feeca02c08ad2b2f2f61a13f 489 Gene3D G3DSA:3.40.50.300 96 316 5.1E-78 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS04120 ac6b7c24feeca02c08ad2b2f2f61a13f 489 PANTHER PTHR24031:SF261 89 481 2.7E-174 T 22-04-2016 PP4_RS04120 ac6b7c24feeca02c08ad2b2f2f61a13f 489 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 255 263 - T 22-04-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site PP4_RS04120 ac6b7c24feeca02c08ad2b2f2f61a13f 489 Pfam PF00271 Helicase conserved C-terminal domain 334 443 8.1E-30 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS04120 ac6b7c24feeca02c08ad2b2f2f61a13f 489 Gene3D G3DSA:3.40.50.300 317 473 1.3E-50 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS04120 ac6b7c24feeca02c08ad2b2f2f61a13f 489 PANTHER PTHR24031 89 481 2.7E-174 T 22-04-2016 PP4_RS04120 ac6b7c24feeca02c08ad2b2f2f61a13f 489 SUPERFAMILY SSF52540 175 464 3.02E-72 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS04120 ac6b7c24feeca02c08ad2b2f2f61a13f 489 SMART SM00490 362 443 4.3E-31 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS04120 ac6b7c24feeca02c08ad2b2f2f61a13f 489 Pfam PF00270 DEAD/DEAH box helicase 124 299 3.3E-48 T 22-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 PP4_RS15575 a516e0242053ac4a81dee377b5ed153a 842 Gene3D G3DSA:3.40.50.150 521 756 5.7E-35 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS15575 a516e0242053ac4a81dee377b5ed153a 842 SUPERFAMILY SSF53335 474 706 3.65E-37 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS15575 a516e0242053ac4a81dee377b5ed153a 842 PANTHER PTHR11558 530 764 2.0E-22 T 22-04-2016 PP4_RS15575 a516e0242053ac4a81dee377b5ed153a 842 Pfam PF01564 Spermine/spermidine synthase 528 668 2.0E-6 T 22-04-2016 PP4_RS15575 a516e0242053ac4a81dee377b5ed153a 842 SUPERFAMILY SSF103473 355 439 1.31E-11 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS15575 a516e0242053ac4a81dee377b5ed153a 842 SUPERFAMILY SSF103473 23 328 1.31E-11 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS15575 a516e0242053ac4a81dee377b5ed153a 842 PANTHER PTHR11558:SF4 530 764 2.0E-22 T 22-04-2016 PP4_RS18625 0eda8503d297018181078cfcc30b3080 1149 Pfam PF00271 Helicase conserved C-terminal domain 804 908 5.0E-17 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS18625 0eda8503d297018181078cfcc30b3080 1149 Gene3D G3DSA:3.30.2060.10 130 207 3.6E-14 T 22-04-2016 PP4_RS18625 0eda8503d297018181078cfcc30b3080 1149 Pfam PF00270 DEAD/DEAH box helicase 604 764 2.0E-17 T 22-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 PP4_RS18625 0eda8503d297018181078cfcc30b3080 1149 SUPERFAMILY SSF141259 469 547 1.83E-23 T 22-04-2016 IPR003711 CarD-like/TRCF domain PP4_RS18625 0eda8503d297018181078cfcc30b3080 1149 SUPERFAMILY SSF52540 522 782 4.23E-61 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS18625 0eda8503d297018181078cfcc30b3080 1149 SUPERFAMILY SSF52540 781 989 3.9E-46 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS18625 0eda8503d297018181078cfcc30b3080 1149 Pfam PF02559 CarD-like/TRCF domain 479 574 8.2E-24 T 22-04-2016 IPR003711 CarD-like/TRCF domain PP4_RS18625 0eda8503d297018181078cfcc30b3080 1149 TIGRFAM TIGR00580 mfd: transcription-repair coupling factor 147 1080 0.0 T 22-04-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 PP4_RS18625 0eda8503d297018181078cfcc30b3080 1149 Gene3D G3DSA:3.40.50.300 794 955 1.1E-34 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS18625 0eda8503d297018181078cfcc30b3080 1149 SUPERFAMILY SSF52540 11 340 1.26E-106 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS18625 0eda8503d297018181078cfcc30b3080 1149 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 25 1106 28.982 T 22-04-2016 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 PP4_RS18625 0eda8503d297018181078cfcc30b3080 1149 SMART SM00490 825 909 4.0E-16 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS18625 0eda8503d297018181078cfcc30b3080 1149 Pfam PF03461 TRCF domain 1008 1099 2.5E-27 T 22-04-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 PP4_RS18625 0eda8503d297018181078cfcc30b3080 1149 PANTHER PTHR14025:SF21 382 1144 0.0 T 22-04-2016 PP4_RS18625 0eda8503d297018181078cfcc30b3080 1149 SUPERFAMILY SSF143517 994 1145 2.22E-43 T 22-04-2016 PP4_RS18625 0eda8503d297018181078cfcc30b3080 1149 Gene3D G3DSA:3.40.50.300 593 785 1.5E-56 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS18625 0eda8503d297018181078cfcc30b3080 1149 PANTHER PTHR14025 382 1144 0.0 T 22-04-2016 PP4_RS18625 0eda8503d297018181078cfcc30b3080 1149 SMART SM01058 478 575 3.2E-50 T 22-04-2016 IPR003711 CarD-like/TRCF domain PP4_RS18625 0eda8503d297018181078cfcc30b3080 1149 SUPERFAMILY SSF52540 351 464 6.64E-31 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS18625 0eda8503d297018181078cfcc30b3080 1149 SMART SM00982 1007 1107 2.4E-51 T 22-04-2016 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 PP4_RS18625 0eda8503d297018181078cfcc30b3080 1149 SMART SM00487 599 789 1.5E-33 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PP4_RS26225 d18ba4b462d440c9153c6163ba45716c 147 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 1.7E-8 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS26225 d18ba4b462d440c9153c6163ba45716c 147 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 1.7E-8 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS26225 d18ba4b462d440c9153c6163ba45716c 147 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 1.7E-8 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS26225 d18ba4b462d440c9153c6163ba45716c 147 Gene3D G3DSA:1.10.1660.10 1 55 2.1E-27 T 22-04-2016 PP4_RS26225 d18ba4b462d440c9153c6163ba45716c 147 TIGRFAM TIGR02047 CadR-PbrR: Cd(II)/Pb(II)-responsive transcriptional regulator 1 125 1.1E-62 T 22-04-2016 IPR011791 Cd(II)/Pb(II)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0045893|GO:0046872 PP4_RS26225 d18ba4b462d440c9153c6163ba45716c 147 PANTHER PTHR30204:SF18 1 112 2.2E-48 T 22-04-2016 PP4_RS26225 d18ba4b462d440c9153c6163ba45716c 147 SMART SM00422 1 70 8.0E-33 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS26225 d18ba4b462d440c9153c6163ba45716c 147 PANTHER PTHR30204 1 112 2.2E-48 T 22-04-2016 PP4_RS26225 d18ba4b462d440c9153c6163ba45716c 147 SUPERFAMILY SSF46955 1 114 4.03E-35 T 22-04-2016 IPR009061 Putative DNA-binding domain PP4_RS26225 d18ba4b462d440c9153c6163ba45716c 147 Gene3D G3DSA:1.10.1660.10 56 129 7.5E-27 T 22-04-2016 PP4_RS26225 d18ba4b462d440c9153c6163ba45716c 147 ProSitePatterns PS00552 MerR-type HTH domain signature. 4 26 - T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS26225 d18ba4b462d440c9153c6163ba45716c 147 Pfam PF13411 MerR HTH family regulatory protein 1 68 2.1E-21 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS04005 4e5d8acd39e910cccf9e92b2b1d2e7c4 513 Gene3D G3DSA:1.20.1250.20 33 212 4.0E-18 T 22-04-2016 PP4_RS04005 4e5d8acd39e910cccf9e92b2b1d2e7c4 513 Gene3D G3DSA:1.20.1250.20 284 444 3.4E-8 T 22-04-2016 PP4_RS04005 4e5d8acd39e910cccf9e92b2b1d2e7c4 513 Gene3D G3DSA:1.20.1250.20 484 503 3.4E-8 T 22-04-2016 PP4_RS04005 4e5d8acd39e910cccf9e92b2b1d2e7c4 513 Pfam PF07690 Major Facilitator Superfamily 36 432 2.7E-32 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS04005 4e5d8acd39e910cccf9e92b2b1d2e7c4 513 PANTHER PTHR23501 15 457 3.7E-113 T 22-04-2016 PP4_RS04005 4e5d8acd39e910cccf9e92b2b1d2e7c4 513 PANTHER PTHR23501 474 510 3.7E-113 T 22-04-2016 PP4_RS04005 4e5d8acd39e910cccf9e92b2b1d2e7c4 513 SUPERFAMILY SSF103473 270 442 4.45E-34 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS04005 4e5d8acd39e910cccf9e92b2b1d2e7c4 513 SUPERFAMILY SSF103473 479 504 4.45E-34 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS04005 4e5d8acd39e910cccf9e92b2b1d2e7c4 513 SUPERFAMILY SSF103473 33 221 4.45E-34 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS04005 4e5d8acd39e910cccf9e92b2b1d2e7c4 513 PANTHER PTHR23501:SF71 15 457 3.7E-113 T 22-04-2016 PP4_RS04005 4e5d8acd39e910cccf9e92b2b1d2e7c4 513 PANTHER PTHR23501:SF71 474 510 3.7E-113 T 22-04-2016 PP4_RS13775 b81a684327033881e1ecac84dec04353 441 Pfam PF07690 Major Facilitator Superfamily 22 382 1.5E-38 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS13775 b81a684327033881e1ecac84dec04353 441 Gene3D G3DSA:1.20.1250.20 231 427 2.8E-10 T 22-04-2016 PP4_RS13775 b81a684327033881e1ecac84dec04353 441 Gene3D G3DSA:1.20.1250.20 14 197 5.0E-33 T 22-04-2016 PP4_RS13775 b81a684327033881e1ecac84dec04353 441 PANTHER PTHR23505 6 424 5.1E-54 T 22-04-2016 PP4_RS13775 b81a684327033881e1ecac84dec04353 441 SUPERFAMILY SSF103473 5 428 1.44E-59 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS23310 41eb969cb35d2779ccf732350b602e45 431 PANTHER PTHR22912:SF140 205 343 1.5E-24 T 22-04-2016 PP4_RS23310 41eb969cb35d2779ccf732350b602e45 431 PANTHER PTHR22912:SF140 1 189 1.5E-24 T 22-04-2016 PP4_RS23310 41eb969cb35d2779ccf732350b602e45 431 SUPERFAMILY SSF51905 2 347 6.24E-31 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS23310 41eb969cb35d2779ccf732350b602e45 431 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 1.1E-14 T 22-04-2016 PP4_RS23310 41eb969cb35d2779ccf732350b602e45 431 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 112 130 1.1E-14 T 22-04-2016 PP4_RS23310 41eb969cb35d2779ccf732350b602e45 431 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 292 314 1.1E-14 T 22-04-2016 PP4_RS23310 41eb969cb35d2779ccf732350b602e45 431 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 169 187 1.1E-14 T 22-04-2016 PP4_RS23310 41eb969cb35d2779ccf732350b602e45 431 Gene3D G3DSA:3.50.50.60 2 119 3.4E-19 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS23310 41eb969cb35d2779ccf732350b602e45 431 Gene3D G3DSA:3.50.50.60 120 343 3.6E-34 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS23310 41eb969cb35d2779ccf732350b602e45 431 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 169 194 3.4E-8 T 22-04-2016 PP4_RS23310 41eb969cb35d2779ccf732350b602e45 431 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 3.4E-8 T 22-04-2016 PP4_RS23310 41eb969cb35d2779ccf732350b602e45 431 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 307 314 3.4E-8 T 22-04-2016 PP4_RS23310 41eb969cb35d2779ccf732350b602e45 431 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 336 3.7E-62 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS23310 41eb969cb35d2779ccf732350b602e45 431 PANTHER PTHR22912 205 343 1.5E-24 T 22-04-2016 PP4_RS23310 41eb969cb35d2779ccf732350b602e45 431 PANTHER PTHR22912 1 189 1.5E-24 T 22-04-2016 PP4_RS02855 61d8dd11252ad61301a9d7db1ad81d8d 322 Pfam PF00586 AIR synthase related protein, N-terminal domain 29 138 1.2E-21 T 22-04-2016 IPR016188 PurM-like, N-terminal domain PP4_RS02855 61d8dd11252ad61301a9d7db1ad81d8d 322 TIGRFAM TIGR01379 thiL: thiamine-phosphate kinase 2 318 2.0E-91 T 22-04-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 PP4_RS02855 61d8dd11252ad61301a9d7db1ad81d8d 322 Hamap MF_02128 Thiamine-monophosphate kinase [thiL]. 1 315 29.142 T 22-04-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 PP4_RS02855 61d8dd11252ad61301a9d7db1ad81d8d 322 Gene3D G3DSA:3.90.650.10 145 318 1.5E-44 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain PP4_RS02855 61d8dd11252ad61301a9d7db1ad81d8d 322 SUPERFAMILY SSF55326 1 138 3.84E-32 T 22-04-2016 PP4_RS02855 61d8dd11252ad61301a9d7db1ad81d8d 322 Pfam PF02769 AIR synthase related protein, C-terminal domain 151 301 2.9E-7 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain PP4_RS02855 61d8dd11252ad61301a9d7db1ad81d8d 322 Gene3D G3DSA:3.30.1330.10 1 141 9.8E-42 T 22-04-2016 IPR016188 PurM-like, N-terminal domain PP4_RS02855 61d8dd11252ad61301a9d7db1ad81d8d 322 SUPERFAMILY SSF56042 143 300 1.53E-34 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain PP4_RS02855 61d8dd11252ad61301a9d7db1ad81d8d 322 PANTHER PTHR30270 1 322 5.8E-105 T 22-04-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 PP4_RS02855 61d8dd11252ad61301a9d7db1ad81d8d 322 PIRSF PIRSF005303 1 318 5.5E-78 T 22-04-2016 IPR006283 Thiamine-monophosphate kinase GO:0009030|GO:0009228 KEGG: 00730+2.7.4.16|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6896|MetaCyc: PWY-6897|UniPathway: UPA00060 PP4_RS02855 61d8dd11252ad61301a9d7db1ad81d8d 322 PANTHER PTHR30270:SF0 1 322 5.8E-105 T 22-04-2016 PP4_RS17425 c8408d63790ded89297f534cc3a46ada 629 Pfam PF13193 AMP-binding enzyme C-terminal domain 509 588 1.3E-24 T 22-04-2016 IPR025110 AMP-binding enzyme C-terminal domain PP4_RS17425 c8408d63790ded89297f534cc3a46ada 629 Gene3D G3DSA:3.30.300.30 495 600 1.5E-23 T 22-04-2016 PP4_RS17425 c8408d63790ded89297f534cc3a46ada 629 ProSitePatterns PS00455 Putative AMP-binding domain signature. 236 247 - T 22-04-2016 IPR020845 AMP-binding, conserved site PP4_RS17425 c8408d63790ded89297f534cc3a46ada 629 SUPERFAMILY SSF56801 3 622 3.14E-156 T 22-04-2016 PP4_RS17425 c8408d63790ded89297f534cc3a46ada 629 PANTHER PTHR24095:SF160 1 622 0.0 T 22-04-2016 PP4_RS17425 c8408d63790ded89297f534cc3a46ada 629 PANTHER PTHR24095 1 622 0.0 T 22-04-2016 PP4_RS17425 c8408d63790ded89297f534cc3a46ada 629 Gene3D G3DSA:3.40.50.980 242 399 6.3E-30 T 22-04-2016 PP4_RS17425 c8408d63790ded89297f534cc3a46ada 629 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 3 56 7.5E-17 T 22-04-2016 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118 PP4_RS17425 c8408d63790ded89297f534cc3a46ada 629 Gene3D G3DSA:3.40.50.980 66 241 2.1E-34 T 22-04-2016 PP4_RS17425 c8408d63790ded89297f534cc3a46ada 629 Gene3D G3DSA:2.30.38.10 416 494 1.5E-11 T 22-04-2016 PP4_RS17425 c8408d63790ded89297f534cc3a46ada 629 Pfam PF00501 AMP-binding enzyme 68 500 3.1E-88 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PP4_RS07030 d8010cbd7d9bb3ceeb517ffe7a4a6ef8 440 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 9 29 - T 22-04-2016 IPR019776 Flagellar basal body rod protein, conserved site PP4_RS07030 d8010cbd7d9bb3ceeb517ffe7a4a6ef8 440 Pfam PF00460 Flagella basal body rod protein 3 33 7.9E-9 T 22-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 PP4_RS07030 d8010cbd7d9bb3ceeb517ffe7a4a6ef8 440 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 1 422 4.6E-95 T 22-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G PP4_RS07030 d8010cbd7d9bb3ceeb517ffe7a4a6ef8 440 PANTHER PTHR30435:SF1 318 439 1.9E-86 T 22-04-2016 PP4_RS07030 d8010cbd7d9bb3ceeb517ffe7a4a6ef8 440 PANTHER PTHR30435:SF1 1 125 1.9E-86 T 22-04-2016 PP4_RS07030 d8010cbd7d9bb3ceeb517ffe7a4a6ef8 440 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 361 439 3.7E-17 T 22-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain PP4_RS07030 d8010cbd7d9bb3ceeb517ffe7a4a6ef8 440 PANTHER PTHR30435 318 439 1.9E-86 T 22-04-2016 PP4_RS07030 d8010cbd7d9bb3ceeb517ffe7a4a6ef8 440 PANTHER PTHR30435 1 125 1.9E-86 T 22-04-2016 PP4_RS07030 d8010cbd7d9bb3ceeb517ffe7a4a6ef8 440 SUPERFAMILY SSF117143 280 401 4.18E-77 T 22-04-2016 PP4_RS07030 d8010cbd7d9bb3ceeb517ffe7a4a6ef8 440 SUPERFAMILY SSF117143 82 250 4.18E-77 T 22-04-2016 PP4_RS07030 d8010cbd7d9bb3ceeb517ffe7a4a6ef8 440 Pfam PF07559 Flagellar basal body protein FlaE 178 321 6.2E-24 T 22-04-2016 IPR011491 Flagellar hook protein FlgE PP4_RS27295 74710a79aafa10a1dd896fc74d7ae013 290 PANTHER PTHR10534 1 290 1.5E-123 T 22-04-2016 IPR004625 Pyridoxine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 PP4_RS27295 74710a79aafa10a1dd896fc74d7ae013 290 SUPERFAMILY SSF53613 4 282 1.09E-69 T 22-04-2016 IPR029056 Ribokinase-like PP4_RS27295 74710a79aafa10a1dd896fc74d7ae013 290 PANTHER PTHR10534:SF0 1 290 1.5E-123 T 22-04-2016 PP4_RS27295 74710a79aafa10a1dd896fc74d7ae013 290 Hamap MF_01639 Pyridoxamine kinase [pdxY]. 4 288 53.059 T 22-04-2016 IPR023685 Pyridoxal kinase PdxY GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 PP4_RS27295 74710a79aafa10a1dd896fc74d7ae013 290 Pfam PF08543 Phosphomethylpyrimidine kinase 76 257 8.8E-13 T 22-04-2016 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase UniPathway: UPA00647 PP4_RS27295 74710a79aafa10a1dd896fc74d7ae013 290 TIGRFAM TIGR00687 pyridox_kin: pyridoxal kinase 6 286 1.3E-112 T 22-04-2016 IPR004625 Pyridoxine kinase GO:0008478|GO:0009443 KEGG: 00750+2.7.1.35|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 PP4_RS27295 74710a79aafa10a1dd896fc74d7ae013 290 Gene3D G3DSA:3.40.1190.20 3 286 7.2E-85 T 22-04-2016 IPR029056 Ribokinase-like PP4_RS24495 f11021b10d487e1e264c6dccb8507222 253 PANTHER PTHR30336 1 252 2.8E-46 T 22-04-2016 PP4_RS24495 f11021b10d487e1e264c6dccb8507222 253 Gene3D G3DSA:3.40.50.620 79 213 3.9E-33 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS24495 f11021b10d487e1e264c6dccb8507222 253 Pfam PF02698 DUF218 domain 81 244 4.5E-26 T 22-04-2016 IPR003848 Domain of unknown function DUF218 PP4_RS24495 f11021b10d487e1e264c6dccb8507222 253 PANTHER PTHR30336:SF1 1 252 2.8E-46 T 22-04-2016 PP4_RS03930 a36adedeb567d0c3e8a037e9664cab41 191 SUPERFAMILY SSF88946 15 103 2.51E-14 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS03930 a36adedeb567d0c3e8a037e9664cab41 191 Pfam PF04542 Sigma-70 region 2 30 89 1.3E-13 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS03930 a36adedeb567d0c3e8a037e9664cab41 191 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 35 173 6.8E-25 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS03930 a36adedeb567d0c3e8a037e9664cab41 191 Gene3D G3DSA:1.10.1740.10 16 111 1.5E-13 T 22-04-2016 PP4_RS03930 a36adedeb567d0c3e8a037e9664cab41 191 SUPERFAMILY SSF88659 104 176 1.57E-14 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS03930 a36adedeb567d0c3e8a037e9664cab41 191 Gene3D G3DSA:1.10.10.10 115 176 1.7E-16 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS03930 a36adedeb567d0c3e8a037e9664cab41 191 PANTHER PTHR30173 15 184 3.2E-32 T 22-04-2016 PP4_RS03930 a36adedeb567d0c3e8a037e9664cab41 191 Pfam PF08281 Sigma-70, region 4 119 172 7.7E-17 T 22-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS22615 66d93358c2c24f44188447a900b14292 331 SMART SM00354 1 73 9.9E-26 T 22-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PP4_RS22615 66d93358c2c24f44188447a900b14292 331 Gene3D G3DSA:1.10.260.40 1 60 2.3E-22 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS22615 66d93358c2c24f44188447a900b14292 331 Gene3D G3DSA:3.40.50.2300 61 165 2.7E-28 T 22-04-2016 PP4_RS22615 66d93358c2c24f44188447a900b14292 331 Gene3D G3DSA:3.40.50.2300 166 330 6.0E-30 T 22-04-2016 PP4_RS22615 66d93358c2c24f44188447a900b14292 331 SUPERFAMILY SSF47413 2 58 6.88E-14 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS22615 66d93358c2c24f44188447a900b14292 331 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 62 208 1.4E-16 T 22-04-2016 IPR001761 Periplasmic binding protein/LacI sugar binding domain PP4_RS22615 66d93358c2c24f44188447a900b14292 331 PANTHER PTHR30146:SF25 1 331 2.4E-158 T 22-04-2016 PP4_RS22615 66d93358c2c24f44188447a900b14292 331 ProSitePatterns PS00356 LacI-type HTH domain signature. 3 21 - T 22-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PP4_RS22615 66d93358c2c24f44188447a900b14292 331 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 50 3.5E-16 T 22-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PP4_RS22615 66d93358c2c24f44188447a900b14292 331 PANTHER PTHR30146 1 331 2.4E-158 T 22-04-2016 PP4_RS22615 66d93358c2c24f44188447a900b14292 331 TIGRFAM TIGR02417 fruct_sucro_rep: D-fructose-responsive transcription factor 2 327 4.3E-151 T 22-04-2016 IPR012781 D-fructose-responsive transcription factor GO:0003677|GO:0006355|GO:0009750 PP4_RS22615 66d93358c2c24f44188447a900b14292 331 SUPERFAMILY SSF53822 61 315 3.73E-44 T 22-04-2016 IPR028082 Periplasmic binding protein-like I PP4_RS08010 9e803eb105f4826089676c8e7d229cd8 478 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 46 56 - T 22-04-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 PP4_RS08010 9e803eb105f4826089676c8e7d229cd8 478 SUPERFAMILY SSF51905 1 344 7.21E-62 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS08010 9e803eb105f4826089676c8e7d229cd8 478 Gene3D G3DSA:3.30.390.30 341 471 3.6E-51 T 22-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 PP4_RS08010 9e803eb105f4826089676c8e7d229cd8 478 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 334 7.6E-75 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS08010 9e803eb105f4826089676c8e7d229cd8 478 SUPERFAMILY SSF55424 350 472 5.84E-43 T 22-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 PP4_RS08010 9e803eb105f4826089676c8e7d229cd8 478 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 4 472 5.3E-163 T 22-04-2016 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084 PP4_RS08010 9e803eb105f4826089676c8e7d229cd8 478 PIRSF PIRSF000350 1 469 2.8E-91 T 22-04-2016 PP4_RS08010 9e803eb105f4826089676c8e7d229cd8 478 Gene3D G3DSA:3.50.50.60 148 340 3.4E-52 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS08010 9e803eb105f4826089676c8e7d229cd8 478 Gene3D G3DSA:3.50.50.60 3 147 2.1E-39 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS08010 9e803eb105f4826089676c8e7d229cd8 478 PANTHER PTHR22912 1 465 2.1E-262 T 22-04-2016 PP4_RS08010 9e803eb105f4826089676c8e7d229cd8 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 183 208 1.9E-81 T 22-04-2016 PP4_RS08010 9e803eb105f4826089676c8e7d229cd8 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 147 156 1.9E-81 T 22-04-2016 PP4_RS08010 9e803eb105f4826089676c8e7d229cd8 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 349 370 1.9E-81 T 22-04-2016 PP4_RS08010 9e803eb105f4826089676c8e7d229cd8 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 314 321 1.9E-81 T 22-04-2016 PP4_RS08010 9e803eb105f4826089676c8e7d229cd8 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 45 60 1.9E-81 T 22-04-2016 PP4_RS08010 9e803eb105f4826089676c8e7d229cd8 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 271 285 1.9E-81 T 22-04-2016 PP4_RS08010 9e803eb105f4826089676c8e7d229cd8 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 414 429 1.9E-81 T 22-04-2016 PP4_RS08010 9e803eb105f4826089676c8e7d229cd8 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 1.9E-81 T 22-04-2016 PP4_RS08010 9e803eb105f4826089676c8e7d229cd8 478 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 436 456 1.9E-81 T 22-04-2016 PP4_RS08010 9e803eb105f4826089676c8e7d229cd8 478 PANTHER PTHR22912:SF131 1 465 2.1E-262 T 22-04-2016 PP4_RS08010 9e803eb105f4826089676c8e7d229cd8 478 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 299 321 2.8E-40 T 22-04-2016 PP4_RS08010 9e803eb105f4826089676c8e7d229cd8 478 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 183 201 2.8E-40 T 22-04-2016 PP4_RS08010 9e803eb105f4826089676c8e7d229cd8 478 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 144 162 2.8E-40 T 22-04-2016 PP4_RS08010 9e803eb105f4826089676c8e7d229cd8 478 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 270 286 2.8E-40 T 22-04-2016 PP4_RS08010 9e803eb105f4826089676c8e7d229cd8 478 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 2.8E-40 T 22-04-2016 PP4_RS08010 9e803eb105f4826089676c8e7d229cd8 478 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 353 462 6.3E-41 T 22-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 PP4_RS20825 97c9dd0df443f750148e447ef8b46d9a 121 Pfam PF01219 Prokaryotic diacylglycerol kinase 19 120 5.8E-34 T 22-04-2016 IPR000829 Diacylglycerol kinase, prokaryotic GO:0004143|GO:0008654|GO:0016020 KEGG: 00500+2.7.1.10|KEGG: 00561+2.7.1.107|KEGG: 00564+2.7.1.107|KEGG: 04070+2.7.1.107|MetaCyc: PWY-7039 PP4_RS20825 97c9dd0df443f750148e447ef8b46d9a 121 PANTHER PTHR34299 1 121 1.8E-37 T 22-04-2016 PP4_RS20825 97c9dd0df443f750148e447ef8b46d9a 121 Gene3D G3DSA:1.10.3830.10 6 121 1.2E-43 T 22-04-2016 PP4_RS20825 97c9dd0df443f750148e447ef8b46d9a 121 PANTHER PTHR34299:SF1 1 121 1.8E-37 T 22-04-2016 PP4_RS15445 dd49f6a0fd5439eca5554c449eef43e2 316 Pfam PF12833 Helix-turn-helix domain 230 308 1.4E-16 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS15445 dd49f6a0fd5439eca5554c449eef43e2 316 PANTHER PTHR11019:SF58 60 315 8.5E-68 T 22-04-2016 PP4_RS15445 dd49f6a0fd5439eca5554c449eef43e2 316 SUPERFAMILY SSF52317 1 190 2.16E-40 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS15445 dd49f6a0fd5439eca5554c449eef43e2 316 SMART SM00342 224 307 4.4E-19 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS15445 dd49f6a0fd5439eca5554c449eef43e2 316 Gene3D G3DSA:1.10.10.60 261 310 4.5E-7 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS15445 dd49f6a0fd5439eca5554c449eef43e2 316 Gene3D G3DSA:1.10.10.60 214 260 2.7E-18 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS15445 dd49f6a0fd5439eca5554c449eef43e2 316 Gene3D G3DSA:3.40.50.880 3 213 1.4E-43 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS15445 dd49f6a0fd5439eca5554c449eef43e2 316 Pfam PF01965 DJ-1/PfpI family 77 169 4.0E-15 T 22-04-2016 IPR002818 DJ-1/PfpI PP4_RS15445 dd49f6a0fd5439eca5554c449eef43e2 316 SUPERFAMILY SSF46689 207 254 1.7E-9 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS15445 dd49f6a0fd5439eca5554c449eef43e2 316 SUPERFAMILY SSF46689 260 310 1.34E-6 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS15445 dd49f6a0fd5439eca5554c449eef43e2 316 PANTHER PTHR11019 60 315 8.5E-68 T 22-04-2016 PP4_RS20115 ef2623f8c08c05b6378b3ea66ba65c2b 156 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 14 47 2.8E-8 T 22-04-2016 IPR001451 Hexapeptide repeat PP4_RS20115 ef2623f8c08c05b6378b3ea66ba65c2b 156 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 48 82 1.3E-6 T 22-04-2016 IPR001451 Hexapeptide repeat PP4_RS20115 ef2623f8c08c05b6378b3ea66ba65c2b 156 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 100 133 4.7E-7 T 22-04-2016 IPR001451 Hexapeptide repeat PP4_RS20115 ef2623f8c08c05b6378b3ea66ba65c2b 156 SUPERFAMILY SSF51161 14 152 3.54E-45 T 22-04-2016 IPR011004 Trimeric LpxA-like PP4_RS20115 ef2623f8c08c05b6378b3ea66ba65c2b 156 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 107 135 - T 22-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 PP4_RS20115 ef2623f8c08c05b6378b3ea66ba65c2b 156 PANTHER PTHR23416:SF53 12 150 1.7E-44 T 22-04-2016 PP4_RS20115 ef2623f8c08c05b6378b3ea66ba65c2b 156 Gene3D G3DSA:2.160.10.10 14 152 5.4E-45 T 22-04-2016 PP4_RS20115 ef2623f8c08c05b6378b3ea66ba65c2b 156 PANTHER PTHR23416 12 150 1.7E-44 T 22-04-2016 PP4_RS00490 fd85251e8d5b795b12ab7750b6e46051 245 Pfam PF02104 SURF1 family 18 216 1.6E-29 T 22-04-2016 IPR002994 Surfeit locus 1/Shy1 GO:0016020 PP4_RS00490 fd85251e8d5b795b12ab7750b6e46051 245 PANTHER PTHR23427 2 115 1.9E-14 T 22-04-2016 PP4_RS00490 fd85251e8d5b795b12ab7750b6e46051 245 PANTHER PTHR23427:SF2 2 115 1.9E-14 T 22-04-2016 PP4_RS05200 7f2b23976c956656182e8b0834c1f5bd 702 SUPERFAMILY SSF53706 6 619 1.57E-123 T 22-04-2016 PP4_RS05200 7f2b23976c956656182e8b0834c1f5bd 702 Gene3D G3DSA:2.20.25.90 4 66 1.5E-14 T 22-04-2016 PP4_RS05200 7f2b23976c956656182e8b0834c1f5bd 702 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 9 59 4.9E-7 T 22-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 PP4_RS05200 7f2b23976c956656182e8b0834c1f5bd 702 PANTHER PTHR11615 9 700 3.9E-212 T 22-04-2016 PP4_RS05200 7f2b23976c956656182e8b0834c1f5bd 702 Gene3D G3DSA:2.40.40.20 574 700 3.3E-25 T 22-04-2016 PP4_RS05200 7f2b23976c956656182e8b0834c1f5bd 702 Gene3D G3DSA:3.40.228.10 158 357 3.6E-44 T 22-04-2016 PP4_RS05200 7f2b23976c956656182e8b0834c1f5bd 702 Gene3D G3DSA:3.40.50.740 365 485 6.5E-47 T 22-04-2016 PP4_RS05200 7f2b23976c956656182e8b0834c1f5bd 702 Gene3D G3DSA:3.40.50.740 67 123 6.5E-47 T 22-04-2016 PP4_RS05200 7f2b23976c956656182e8b0834c1f5bd 702 Pfam PF00384 Molybdopterin oxidoreductase 65 482 3.4E-33 T 22-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 PP4_RS05200 7f2b23976c956656182e8b0834c1f5bd 702 Pfam PF01568 Molydopterin dinucleotide binding domain 576 695 3.7E-23 T 22-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 PP4_RS05200 7f2b23976c956656182e8b0834c1f5bd 702 SMART SM00926 3 62 9.7E-10 T 22-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 PP4_RS05200 7f2b23976c956656182e8b0834c1f5bd 702 PANTHER PTHR11615:SF125 9 700 3.9E-212 T 22-04-2016 PP4_RS01110 f45c828ae57fac61beeaa29ae6a0bb83 249 SUPERFAMILY SSF46785 7 79 7.96E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS01110 f45c828ae57fac61beeaa29ae6a0bb83 249 Gene3D G3DSA:1.10.10.10 8 71 3.0E-27 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS01110 f45c828ae57fac61beeaa29ae6a0bb83 249 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 1.1E-9 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS01110 f45c828ae57fac61beeaa29ae6a0bb83 249 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 1.1E-9 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS01110 f45c828ae57fac61beeaa29ae6a0bb83 249 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 75 9.3E-21 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS01110 f45c828ae57fac61beeaa29ae6a0bb83 249 Pfam PF07702 UTRA domain 97 236 6.3E-37 T 22-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 PP4_RS01110 f45c828ae57fac61beeaa29ae6a0bb83 249 SMART SM00345 16 75 5.5E-19 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS01110 f45c828ae57fac61beeaa29ae6a0bb83 249 SUPERFAMILY SSF64288 63 243 7.22E-47 T 22-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain PP4_RS01110 f45c828ae57fac61beeaa29ae6a0bb83 249 PANTHER PTHR11751:SF333 125 148 3.0E-28 T 22-04-2016 PP4_RS01110 f45c828ae57fac61beeaa29ae6a0bb83 249 PANTHER PTHR11751:SF333 10 78 3.0E-28 T 22-04-2016 PP4_RS01110 f45c828ae57fac61beeaa29ae6a0bb83 249 SMART SM00866 96 236 6.5E-34 T 22-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 PP4_RS01110 f45c828ae57fac61beeaa29ae6a0bb83 249 PANTHER PTHR11751 125 148 3.0E-28 T 22-04-2016 PP4_RS01110 f45c828ae57fac61beeaa29ae6a0bb83 249 PANTHER PTHR11751 10 78 3.0E-28 T 22-04-2016 PP4_RS01110 f45c828ae57fac61beeaa29ae6a0bb83 249 Gene3D G3DSA:3.40.1410.10 72 243 2.8E-49 T 22-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain PP4_RS26500 236e926dba653e441d4f2215b366c032 455 Pfam PF01928 CYTH domain 3 201 5.2E-32 T 22-04-2016 IPR023577 CYTH domain PP4_RS26500 236e926dba653e441d4f2215b366c032 455 SUPERFAMILY SSF55154 1 206 7.03E-39 T 22-04-2016 IPR033469 CYTH-like domain PP4_RS26500 236e926dba653e441d4f2215b366c032 455 PANTHER PTHR39569:SF1 2 454 6.7E-103 T 22-04-2016 PP4_RS26500 236e926dba653e441d4f2215b366c032 455 PANTHER PTHR39569 2 454 6.7E-103 T 22-04-2016 PP4_RS26500 236e926dba653e441d4f2215b366c032 455 Gene3D G3DSA:2.40.320.10 1 206 2.1E-29 T 22-04-2016 IPR023577 CYTH domain PP4_RS26500 236e926dba653e441d4f2215b366c032 455 SMART SM01118 2 207 4.0E-32 T 22-04-2016 IPR023577 CYTH domain PP4_RS23340 2ec208c694b7a4a9d4b20451d007361e 854 Pfam PF07724 AAA domain (Cdc48 subfamily) 596 758 1.0E-55 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 PP4_RS23340 2ec208c694b7a4a9d4b20451d007361e 854 Gene3D G3DSA:1.10.8.60 344 428 2.0E-36 T 22-04-2016 PP4_RS23340 2ec208c694b7a4a9d4b20451d007361e 854 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 203 335 4.1E-13 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 PP4_RS23340 2ec208c694b7a4a9d4b20451d007361e 854 SUPERFAMILY SSF52540 546 852 6.59E-82 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23340 2ec208c694b7a4a9d4b20451d007361e 854 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 853 0.0 T 22-04-2016 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0016485 PP4_RS23340 2ec208c694b7a4a9d4b20451d007361e 854 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 294 306 - T 22-04-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 PP4_RS23340 2ec208c694b7a4a9d4b20451d007361e 854 SMART SM00382 198 343 1.1E-12 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS23340 2ec208c694b7a4a9d4b20451d007361e 854 SMART SM00382 597 765 1.2E-10 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS23340 2ec208c694b7a4a9d4b20451d007361e 854 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 708 722 1.3E-42 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 PP4_RS23340 2ec208c694b7a4a9d4b20451d007361e 854 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 601 619 1.3E-42 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 PP4_RS23340 2ec208c694b7a4a9d4b20451d007361e 854 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 646 664 1.3E-42 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 PP4_RS23340 2ec208c694b7a4a9d4b20451d007361e 854 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 675 693 1.3E-42 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 PP4_RS23340 2ec208c694b7a4a9d4b20451d007361e 854 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 68 5.6E-12 T 22-04-2016 IPR004176 Clp, N-terminal GO:0019538 PP4_RS23340 2ec208c694b7a4a9d4b20451d007361e 854 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 94 145 4.6E-11 T 22-04-2016 IPR004176 Clp, N-terminal GO:0019538 PP4_RS23340 2ec208c694b7a4a9d4b20451d007361e 854 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 764 843 1.3E-24 T 22-04-2016 IPR019489 Clp ATPase, C-terminal PP4_RS23340 2ec208c694b7a4a9d4b20451d007361e 854 PANTHER PTHR11638:SF18 1 853 0.0 T 22-04-2016 PP4_RS23340 2ec208c694b7a4a9d4b20451d007361e 854 Gene3D G3DSA:1.10.1780.10 1 147 1.8E-42 T 22-04-2016 IPR004176 Clp, N-terminal GO:0019538 PP4_RS23340 2ec208c694b7a4a9d4b20451d007361e 854 PANTHER PTHR11638 1 853 0.0 T 22-04-2016 PP4_RS23340 2ec208c694b7a4a9d4b20451d007361e 854 Gene3D G3DSA:3.40.50.300 550 774 2.1E-56 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23340 2ec208c694b7a4a9d4b20451d007361e 854 Gene3D G3DSA:1.10.8.60 775 853 2.1E-28 T 22-04-2016 PP4_RS23340 2ec208c694b7a4a9d4b20451d007361e 854 Gene3D G3DSA:3.40.50.300 160 342 3.7E-50 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23340 2ec208c694b7a4a9d4b20451d007361e 854 SUPERFAMILY SSF52540 159 545 3.98E-98 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23340 2ec208c694b7a4a9d4b20451d007361e 854 SUPERFAMILY SSF81923 4 156 1.96E-39 T 22-04-2016 IPR004176 Clp, N-terminal GO:0019538 PP4_RS23340 2ec208c694b7a4a9d4b20451d007361e 854 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 631 649 - T 22-04-2016 IPR028299 ClpA/B, conserved site 2 PP4_RS23340 2ec208c694b7a4a9d4b20451d007361e 854 SMART SM01086 764 853 4.7E-37 T 22-04-2016 IPR019489 Clp ATPase, C-terminal PP4_RS03710 b6089f11a3e81e4273f2544a9c143d55 300 PANTHER PTHR11614 14 287 9.7E-38 T 22-04-2016 PP4_RS03710 b6089f11a3e81e4273f2544a9c143d55 300 PIRSF PIRSF037442 2 292 4.0E-102 T 22-04-2016 IPR017208 Uncharacterised conserved protein UCP037442, alpha/beta hydrolase, RSp0795 PP4_RS03710 b6089f11a3e81e4273f2544a9c143d55 300 Gene3D G3DSA:3.40.50.1820 9 289 3.7E-30 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS03710 b6089f11a3e81e4273f2544a9c143d55 300 SUPERFAMILY SSF53474 7 287 6.13E-30 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS03710 b6089f11a3e81e4273f2544a9c143d55 300 PANTHER PTHR11614:SF82 14 287 9.7E-38 T 22-04-2016 PP4_RS03710 b6089f11a3e81e4273f2544a9c143d55 300 Pfam PF12146 Serine aminopeptidase, S33 47 157 7.4E-16 T 22-04-2016 IPR022742 Serine aminopeptidase, S33 PP4_RS26375 40d55d38d068129cee654f0a27100bf7 276 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 114 129 - T 22-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PP4_RS26375 40d55d38d068129cee654f0a27100bf7 276 Gene3D G3DSA:3.40.50.300 30 200 2.0E-45 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26375 40d55d38d068129cee654f0a27100bf7 276 Pfam PF00158 Sigma-54 interaction domain 33 191 1.1E-52 T 22-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 PP4_RS26375 40d55d38d068129cee654f0a27100bf7 276 Gene3D G3DSA:1.10.8.60 201 272 1.2E-21 T 22-04-2016 PP4_RS26375 40d55d38d068129cee654f0a27100bf7 276 SUPERFAMILY SSF52540 30 269 3.04E-57 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26375 40d55d38d068129cee654f0a27100bf7 276 PANTHER PTHR32071 29 271 1.2E-100 T 22-04-2016 PP4_RS26375 40d55d38d068129cee654f0a27100bf7 276 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 53 66 - T 22-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 PP4_RS26375 40d55d38d068129cee654f0a27100bf7 276 SMART SM00382 49 191 3.7E-7 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS16780 ec31766715dd0a89d35ebfea870b17da 126 Gene3D G3DSA:2.150.10.10 29 117 1.2E-10 T 22-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal PP4_RS16780 ec31766715dd0a89d35ebfea870b17da 126 SUPERFAMILY SSF51120 8 116 2.49E-12 T 22-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal PP4_RS04110 8b131f006d755e4ee14c3132b36cafb0 81 Pfam PF02597 ThiS family 5 81 7.0E-18 T 22-04-2016 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 PP4_RS04110 8b131f006d755e4ee14c3132b36cafb0 81 PANTHER PTHR33359 1 81 4.9E-20 T 22-04-2016 PP4_RS04110 8b131f006d755e4ee14c3132b36cafb0 81 Gene3D G3DSA:3.10.20.30 1 81 3.2E-22 T 22-04-2016 IPR012675 Beta-grasp domain PP4_RS04110 8b131f006d755e4ee14c3132b36cafb0 81 SUPERFAMILY SSF54285 2 81 2.62E-19 T 22-04-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp PP4_RS14905 de8421d01e15160ed13fe016fd7b755b 544 SUPERFAMILY SSF58104 235 544 4.45E-74 T 22-04-2016 PP4_RS14905 de8421d01e15160ed13fe016fd7b755b 544 PANTHER PTHR32089 77 544 1.6E-134 T 22-04-2016 PP4_RS14905 de8421d01e15160ed13fe016fd7b755b 544 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 340 542 2.3E-50 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS14905 de8421d01e15160ed13fe016fd7b755b 544 Gene3D G3DSA:1.10.287.950 296 515 1.1E-56 T 22-04-2016 PP4_RS14905 de8421d01e15160ed13fe016fd7b755b 544 SMART SM00304 213 267 1.7E-9 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS14905 de8421d01e15160ed13fe016fd7b755b 544 Gene3D G3DSA:3.30.450.20 24 183 6.0E-56 T 22-04-2016 PP4_RS14905 de8421d01e15160ed13fe016fd7b755b 544 SMART SM00283 282 543 1.1E-73 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS14905 de8421d01e15160ed13fe016fd7b755b 544 PANTHER PTHR32089:SF34 77 544 1.6E-134 T 22-04-2016 PP4_RS14905 de8421d01e15160ed13fe016fd7b755b 544 Pfam PF17200 Single Cache domain 2 41 191 4.4E-40 T 22-04-2016 IPR033480 Single Cache domain 2 PP4_RS14905 de8421d01e15160ed13fe016fd7b755b 544 SMART SM01049 36 130 5.4E-40 T 22-04-2016 IPR033480 Single Cache domain 2 PP4_RS14905 de8421d01e15160ed13fe016fd7b755b 544 Pfam PF00672 HAMP domain 195 263 9.7E-15 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS14905 de8421d01e15160ed13fe016fd7b755b 544 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 409 438 8.9E-26 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS14905 de8421d01e15160ed13fe016fd7b755b 544 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 7 32 8.9E-26 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS14905 de8421d01e15160ed13fe016fd7b755b 544 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 63 78 8.9E-26 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS14905 de8421d01e15160ed13fe016fd7b755b 544 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 380 407 8.9E-26 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS22185 5021270a82a375d49bb04f44d98e92a8 809 Pfam PF07660 Secretin and TonB N terminus short domain 56 104 6.3E-10 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS22185 5021270a82a375d49bb04f44d98e92a8 809 Pfam PF00593 TonB dependent receptor 545 806 6.3E-33 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS22185 5021270a82a375d49bb04f44d98e92a8 809 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 140 809 8.6E-94 T 22-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 PP4_RS22185 5021270a82a375d49bb04f44d98e92a8 809 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 792 809 - T 22-04-2016 IPR010917 TonB-dependent receptor, conserved site PP4_RS22185 5021270a82a375d49bb04f44d98e92a8 809 PANTHER PTHR30442 35 809 7.1E-162 T 22-04-2016 PP4_RS22185 5021270a82a375d49bb04f44d98e92a8 809 SMART SM00965 55 105 2.0E-14 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS22185 5021270a82a375d49bb04f44d98e92a8 809 Gene3D G3DSA:2.170.130.10 139 253 5.8E-31 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS22185 5021270a82a375d49bb04f44d98e92a8 809 SUPERFAMILY SSF56935 124 809 6.82E-114 T 22-04-2016 PP4_RS22185 5021270a82a375d49bb04f44d98e92a8 809 Pfam PF07715 TonB-dependent Receptor Plug Domain 139 252 2.1E-20 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS22185 5021270a82a375d49bb04f44d98e92a8 809 Gene3D G3DSA:2.40.170.20 254 809 1.9E-105 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS09625 e4c4129f08b5a6273367969009a7c510 267 SUPERFAMILY SSF56529 3 267 3.66E-79 T 22-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 PP4_RS09625 e4c4129f08b5a6273367969009a7c510 267 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 103 266 1.9E-11 T 22-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 PP4_RS09625 e4c4129f08b5a6273367969009a7c510 267 TIGRFAM TIGR02312 HpaH: 2-oxo-hepta-3-ene-1,7-dioic acid hydratase 1 267 4.7E-140 T 22-04-2016 IPR012690 2-oxo-hepta-3-ene-1,7-dioic acid hydratase GO:0019439 UniPathway: UPA00208 PP4_RS09625 e4c4129f08b5a6273367969009a7c510 267 Gene3D G3DSA:3.90.850.10 2 267 2.6E-88 T 22-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 PP4_RS09625 e4c4129f08b5a6273367969009a7c510 267 PANTHER PTHR30143 1 267 7.8E-97 T 22-04-2016 PP4_RS08225 84af73df92d77eee1b1634810a9cd0f0 259 SMART SM00849 12 171 6.0E-37 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS08225 84af73df92d77eee1b1634810a9cd0f0 259 PIRSF PIRSF005457 1 259 4.8E-99 T 22-04-2016 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386|UniPathway: UPA00619 PP4_RS08225 84af73df92d77eee1b1634810a9cd0f0 259 PANTHER PTHR11935 1 259 2.1E-92 T 22-04-2016 PP4_RS08225 84af73df92d77eee1b1634810a9cd0f0 259 TIGRFAM TIGR03413 GSH_gloB: hydroxyacylglutathione hydrolase 4 259 1.9E-101 T 22-04-2016 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386|UniPathway: UPA00619 PP4_RS08225 84af73df92d77eee1b1634810a9cd0f0 259 Pfam PF16123 Hydroxyacylglutathione hydrolase C-terminus 172 259 7.3E-26 T 22-04-2016 IPR032282 Hydroxyacylglutathione hydrolase, C-terminal domain KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386|UniPathway: UPA00619 PP4_RS08225 84af73df92d77eee1b1634810a9cd0f0 259 Pfam PF00753 Metallo-beta-lactamase superfamily 14 165 2.0E-17 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS08225 84af73df92d77eee1b1634810a9cd0f0 259 PANTHER PTHR11935:SF7 1 259 2.1E-92 T 22-04-2016 PP4_RS08225 84af73df92d77eee1b1634810a9cd0f0 259 Hamap MF_01374 Hydroxyacylglutathione hydrolase [gloB]. 2 259 43.16 T 22-04-2016 IPR017782 Hydroxyacylglutathione hydrolase GO:0004416|GO:0019243 KEGG: 00620+3.1.2.6|MetaCyc: PWY-5386|UniPathway: UPA00619 PP4_RS08225 84af73df92d77eee1b1634810a9cd0f0 259 SUPERFAMILY SSF56281 3 259 2.71E-68 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS08225 84af73df92d77eee1b1634810a9cd0f0 259 Gene3D G3DSA:3.60.15.10 6 259 2.4E-85 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS24720 35879d0a6dc83ab2d9db9e83ae2dd4b3 284 PRINTS PR00721 Stomatin signature 154 172 9.6E-27 T 22-04-2016 IPR001972 Stomatin family GO:0016020 PP4_RS24720 35879d0a6dc83ab2d9db9e83ae2dd4b3 284 PRINTS PR00721 Stomatin signature 27 49 9.6E-27 T 22-04-2016 IPR001972 Stomatin family GO:0016020 PP4_RS24720 35879d0a6dc83ab2d9db9e83ae2dd4b3 284 PRINTS PR00721 Stomatin signature 110 127 9.6E-27 T 22-04-2016 IPR001972 Stomatin family GO:0016020 PP4_RS24720 35879d0a6dc83ab2d9db9e83ae2dd4b3 284 PRINTS PR00721 Stomatin signature 130 153 9.6E-27 T 22-04-2016 IPR001972 Stomatin family GO:0016020 PP4_RS24720 35879d0a6dc83ab2d9db9e83ae2dd4b3 284 PRINTS PR00721 Stomatin signature 173 194 9.6E-27 T 22-04-2016 IPR001972 Stomatin family GO:0016020 PP4_RS24720 35879d0a6dc83ab2d9db9e83ae2dd4b3 284 PRINTS PR00721 Stomatin signature 75 96 9.6E-27 T 22-04-2016 IPR001972 Stomatin family GO:0016020 PP4_RS24720 35879d0a6dc83ab2d9db9e83ae2dd4b3 284 PANTHER PTHR10264 4 273 3.1E-87 T 22-04-2016 IPR001972 Stomatin family GO:0016020 PP4_RS24720 35879d0a6dc83ab2d9db9e83ae2dd4b3 284 PANTHER PTHR10264:SF27 4 273 3.1E-87 T 22-04-2016 PP4_RS24720 35879d0a6dc83ab2d9db9e83ae2dd4b3 284 SUPERFAMILY SSF117892 51 184 1.7E-36 T 22-04-2016 IPR001107 Band 7 domain PP4_RS24720 35879d0a6dc83ab2d9db9e83ae2dd4b3 284 Pfam PF01145 SPFH domain / Band 7 family 24 193 1.6E-30 T 22-04-2016 IPR001107 Band 7 domain PP4_RS24720 35879d0a6dc83ab2d9db9e83ae2dd4b3 284 SMART SM00244 20 178 9.3E-54 T 22-04-2016 IPR001107 Band 7 domain PP4_RS18200 59822bb2bc5f0e23905b8007feb6df09 332 Pfam PF00561 alpha/beta hydrolase fold 67 191 2.2E-22 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS18200 59822bb2bc5f0e23905b8007feb6df09 332 SUPERFAMILY SSF53474 32 332 1.47E-60 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS18200 59822bb2bc5f0e23905b8007feb6df09 332 PRINTS PR00412 Epoxide hydrolase signature 151 164 2.8E-8 T 22-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 PP4_RS18200 59822bb2bc5f0e23905b8007feb6df09 332 PRINTS PR00412 Epoxide hydrolase signature 92 107 2.8E-8 T 22-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 PP4_RS18200 59822bb2bc5f0e23905b8007feb6df09 332 PRINTS PR00412 Epoxide hydrolase signature 307 329 2.8E-8 T 22-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 PP4_RS18200 59822bb2bc5f0e23905b8007feb6df09 332 PRINTS PR00412 Epoxide hydrolase signature 137 150 2.8E-8 T 22-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 PP4_RS18200 59822bb2bc5f0e23905b8007feb6df09 332 Gene3D G3DSA:3.40.50.1820 29 330 1.6E-78 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS18200 59822bb2bc5f0e23905b8007feb6df09 332 PANTHER PTHR10992 27 332 7.3E-82 T 22-04-2016 PP4_RS18200 59822bb2bc5f0e23905b8007feb6df09 332 PRINTS PR00111 Alpha/beta hydrolase fold signature 92 107 2.5E-10 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS18200 59822bb2bc5f0e23905b8007feb6df09 332 PRINTS PR00111 Alpha/beta hydrolase fold signature 151 164 2.5E-10 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS18200 59822bb2bc5f0e23905b8007feb6df09 332 PRINTS PR00111 Alpha/beta hydrolase fold signature 137 150 2.5E-10 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS18200 59822bb2bc5f0e23905b8007feb6df09 332 PANTHER PTHR10992:SF771 27 332 7.3E-82 T 22-04-2016 PP4_RS24980 b276c91b43dec982401f31f157c3ff11 430 Gene3D G3DSA:1.10.300.10 104 196 8.1E-39 T 22-04-2016 PP4_RS24980 b276c91b43dec982401f31f157c3ff11 430 SMART SM00788 4 424 2.5E-303 T 22-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 PP4_RS24980 b276c91b43dec982401f31f157c3ff11 430 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 133 144 - T 22-04-2016 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|UniPathway: UPA00075 PP4_RS24980 b276c91b43dec982401f31f157c3ff11 430 Gene3D G3DSA:3.90.170.10 267 425 1.2E-68 T 22-04-2016 PP4_RS24980 b276c91b43dec982401f31f157c3ff11 430 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 6 429 1.4E-187 T 22-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 PP4_RS24980 b276c91b43dec982401f31f157c3ff11 430 Gene3D G3DSA:3.40.440.10 3 94 1.4E-71 T 22-04-2016 PP4_RS24980 b276c91b43dec982401f31f157c3ff11 430 Gene3D G3DSA:3.40.440.10 197 266 1.4E-71 T 22-04-2016 PP4_RS24980 b276c91b43dec982401f31f157c3ff11 430 SUPERFAMILY SSF52540 3 429 1.59E-178 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS24980 b276c91b43dec982401f31f157c3ff11 430 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 430 220.183 T 22-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 PP4_RS24980 b276c91b43dec982401f31f157c3ff11 430 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 11 18 - T 22-04-2016 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 PP4_RS24980 b276c91b43dec982401f31f157c3ff11 430 PANTHER PTHR11846 1 428 5.2E-255 T 22-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 PP4_RS24980 b276c91b43dec982401f31f157c3ff11 430 Pfam PF00709 Adenylosuccinate synthetase 5 423 3.2E-178 T 22-04-2016 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: REACT_1698|UniPathway: UPA00075 PP4_RS01225 6d63c476dd2b5f8b0baba05f56961e1e 369 Pfam PF00005 ABC transporter 50 198 1.7E-35 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS01225 6d63c476dd2b5f8b0baba05f56961e1e 369 SMART SM00382 59 247 3.5E-16 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS01225 6d63c476dd2b5f8b0baba05f56961e1e 369 PANTHER PTHR24220 34 270 9.9E-136 T 22-04-2016 PP4_RS01225 6d63c476dd2b5f8b0baba05f56961e1e 369 PANTHER PTHR24220:SF186 34 270 9.9E-136 T 22-04-2016 IPR026253 Methionine import ATP-binding protein MetN GO:0005524|GO:0015821|GO:0042626 PP4_RS01225 6d63c476dd2b5f8b0baba05f56961e1e 369 ProSitePatterns PS00211 ABC transporters family signature. 170 184 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS01225 6d63c476dd2b5f8b0baba05f56961e1e 369 Pfam PF09383 NIL domain 304 364 3.2E-12 T 22-04-2016 IPR018449 NIL domain PP4_RS01225 6d63c476dd2b5f8b0baba05f56961e1e 369 Gene3D G3DSA:3.30.70.260 266 368 7.3E-15 T 22-04-2016 PP4_RS01225 6d63c476dd2b5f8b0baba05f56961e1e 369 SUPERFAMILY SSF55021 277 368 4.81E-11 T 22-04-2016 PP4_RS01225 6d63c476dd2b5f8b0baba05f56961e1e 369 Gene3D G3DSA:3.40.50.300 33 265 1.1E-85 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS01225 6d63c476dd2b5f8b0baba05f56961e1e 369 SUPERFAMILY SSF52540 36 268 1.69E-80 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS01225 6d63c476dd2b5f8b0baba05f56961e1e 369 SMART SM00930 294 365 3.0E-11 T 22-04-2016 IPR018449 NIL domain PP4_RS02005 6236ac7f14819dbb85ff42505b1f37c6 243 PANTHER PTHR10992 5 239 3.4E-16 T 22-04-2016 PP4_RS02005 6236ac7f14819dbb85ff42505b1f37c6 243 SUPERFAMILY SSF53474 4 239 6.43E-28 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS02005 6236ac7f14819dbb85ff42505b1f37c6 243 PANTHER PTHR10992:SF812 5 239 3.4E-16 T 22-04-2016 PP4_RS02005 6236ac7f14819dbb85ff42505b1f37c6 243 Pfam PF12697 Alpha/beta hydrolase family 5 231 2.1E-10 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS02005 6236ac7f14819dbb85ff42505b1f37c6 243 Gene3D G3DSA:3.40.50.1820 5 238 4.5E-28 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS08380 065dc65da2221e17dfacc68bc1ee6f81 703 SUPERFAMILY SSF54211 487 607 2.15E-39 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PP4_RS08380 065dc65da2221e17dfacc68bc1ee6f81 703 Pfam PF00009 Elongation factor Tu GTP binding domain 10 288 3.0E-64 T 22-04-2016 PP4_RS08380 065dc65da2221e17dfacc68bc1ee6f81 703 PRINTS PR00315 GTP-binding elongation factor signature 102 113 1.4E-16 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS08380 065dc65da2221e17dfacc68bc1ee6f81 703 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.4E-16 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS08380 065dc65da2221e17dfacc68bc1ee6f81 703 PRINTS PR00315 GTP-binding elongation factor signature 138 147 1.4E-16 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS08380 065dc65da2221e17dfacc68bc1ee6f81 703 PRINTS PR00315 GTP-binding elongation factor signature 86 96 1.4E-16 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS08380 065dc65da2221e17dfacc68bc1ee6f81 703 PRINTS PR00315 GTP-binding elongation factor signature 12 25 1.4E-16 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS08380 065dc65da2221e17dfacc68bc1ee6f81 703 Gene3D G3DSA:3.30.70.870 413 488 6.6E-40 T 22-04-2016 PP4_RS08380 065dc65da2221e17dfacc68bc1ee6f81 703 SUPERFAMILY SSF50447 272 412 2.36E-34 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain PP4_RS08380 065dc65da2221e17dfacc68bc1ee6f81 703 SMART SM00838 609 696 5.4E-52 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain PP4_RS08380 065dc65da2221e17dfacc68bc1ee6f81 703 Pfam PF03764 Elongation factor G, domain IV 487 605 1.6E-40 T 22-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 PP4_RS08380 065dc65da2221e17dfacc68bc1ee6f81 703 Gene3D G3DSA:3.30.70.240 609 693 6.0E-30 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain PP4_RS08380 065dc65da2221e17dfacc68bc1ee6f81 703 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 22-04-2016 IPR031157 Tr-type G domain, conserved site PP4_RS08380 065dc65da2221e17dfacc68bc1ee6f81 703 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 11 188 1.4E-34 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 PP4_RS08380 065dc65da2221e17dfacc68bc1ee6f81 703 Pfam PF03144 Elongation factor Tu domain 2 332 399 3.3E-14 T 22-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 PP4_RS08380 065dc65da2221e17dfacc68bc1ee6f81 703 SUPERFAMILY SSF52540 6 288 3.44E-103 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS08380 065dc65da2221e17dfacc68bc1ee6f81 703 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 701 0.0 T 22-04-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 PP4_RS08380 065dc65da2221e17dfacc68bc1ee6f81 703 PANTHER PTHR23115 311 700 0.0 T 22-04-2016 PP4_RS08380 065dc65da2221e17dfacc68bc1ee6f81 703 PANTHER PTHR23115 262 290 0.0 T 22-04-2016 PP4_RS08380 065dc65da2221e17dfacc68bc1ee6f81 703 PANTHER PTHR23115 3 185 0.0 T 22-04-2016 PP4_RS08380 065dc65da2221e17dfacc68bc1ee6f81 703 Pfam PF00679 Elongation factor G C-terminus 609 694 1.6E-28 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain PP4_RS08380 065dc65da2221e17dfacc68bc1ee6f81 703 Pfam PF14492 Elongation Factor G, domain II 412 486 5.5E-35 T 22-04-2016 IPR009022 Elongation factor G, III-V domain PP4_RS08380 065dc65da2221e17dfacc68bc1ee6f81 703 SUPERFAMILY SSF54980 612 699 1.06E-26 T 22-04-2016 IPR009022 Elongation factor G, III-V domain PP4_RS08380 065dc65da2221e17dfacc68bc1ee6f81 703 Gene3D G3DSA:3.40.50.300 7 294 1.2E-99 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS08380 065dc65da2221e17dfacc68bc1ee6f81 703 Gene3D G3DSA:3.30.230.10 492 608 5.2E-44 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PP4_RS08380 065dc65da2221e17dfacc68bc1ee6f81 703 SUPERFAMILY SSF54980 412 489 1.12E-25 T 22-04-2016 IPR009022 Elongation factor G, III-V domain PP4_RS08380 065dc65da2221e17dfacc68bc1ee6f81 703 Gene3D G3DSA:2.40.30.10 313 412 1.2E-36 T 22-04-2016 PP4_RS08380 065dc65da2221e17dfacc68bc1ee6f81 703 PANTHER PTHR23115:SF66 311 700 0.0 T 22-04-2016 PP4_RS08380 065dc65da2221e17dfacc68bc1ee6f81 703 PANTHER PTHR23115:SF66 262 290 0.0 T 22-04-2016 PP4_RS08380 065dc65da2221e17dfacc68bc1ee6f81 703 PANTHER PTHR23115:SF66 3 185 0.0 T 22-04-2016 PP4_RS08380 065dc65da2221e17dfacc68bc1ee6f81 703 Hamap MF_00054_B Elongation factor G [fusA]. 6 700 106.968 T 22-04-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 PP4_RS08380 065dc65da2221e17dfacc68bc1ee6f81 703 SMART SM00889 488 607 3.8E-66 T 22-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 PP4_RS07905 2ba909367fda778984c3b96f22f244d2 390 Gene3D G3DSA:2.40.50.100 63 95 6.5E-19 T 22-04-2016 PP4_RS07905 2ba909367fda778984c3b96f22f244d2 390 Gene3D G3DSA:2.40.50.100 184 215 6.5E-19 T 22-04-2016 PP4_RS07905 2ba909367fda778984c3b96f22f244d2 390 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 38 382 1.9E-49 T 22-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 PP4_RS07905 2ba909367fda778984c3b96f22f244d2 390 SUPERFAMILY SSF111369 52 244 4.97E-24 T 22-04-2016 PP4_RS07905 2ba909367fda778984c3b96f22f244d2 390 PANTHER PTHR30572:SF3 24 382 1.2E-113 T 22-04-2016 PP4_RS07905 2ba909367fda778984c3b96f22f244d2 390 PANTHER PTHR30572 24 382 1.2E-113 T 22-04-2016 PP4_RS07905 2ba909367fda778984c3b96f22f244d2 390 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 48 265 2.5E-19 T 22-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PP4_RS25650 bb722e4577b0337836576b8d260d6a0a 244 Gene3D G3DSA:3.40.50.300 1 240 4.1E-83 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25650 bb722e4577b0337836576b8d260d6a0a 244 SMART SM00382 30 217 1.1E-15 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS25650 bb722e4577b0337836576b8d260d6a0a 244 SUPERFAMILY SSF52540 1 239 5.99E-82 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25650 bb722e4577b0337836576b8d260d6a0a 244 PANTHER PTHR24220:SF474 3 244 1.0E-137 T 22-04-2016 PP4_RS25650 bb722e4577b0337836576b8d260d6a0a 244 PANTHER PTHR24220 3 244 1.0E-137 T 22-04-2016 PP4_RS25650 bb722e4577b0337836576b8d260d6a0a 244 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS25650 bb722e4577b0337836576b8d260d6a0a 244 Pfam PF00005 ABC transporter 21 169 4.7E-38 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS25650 bb722e4577b0337836576b8d260d6a0a 244 PIRSF PIRSF039085 1 244 3.7E-106 T 22-04-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 PP4_RS13315 543e2a6b52dd28b087f8ae93570bff06 2208 Pfam PF11784 Protein of unknown function (DUF3320) 2057 2106 1.6E-19 T 22-04-2016 IPR021754 Protein of unknown function DUF3320 PP4_RS13315 543e2a6b52dd28b087f8ae93570bff06 2208 Gene3D G3DSA:3.40.50.300 1554 1658 1.9E-44 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS13315 543e2a6b52dd28b087f8ae93570bff06 2208 Gene3D G3DSA:3.40.50.300 677 822 1.9E-44 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS13315 543e2a6b52dd28b087f8ae93570bff06 2208 PANTHER PTHR10887:SF340 12 19 5.5E-61 T 22-04-2016 PP4_RS13315 543e2a6b52dd28b087f8ae93570bff06 2208 PANTHER PTHR10887:SF340 1450 1809 5.5E-61 T 22-04-2016 PP4_RS13315 543e2a6b52dd28b087f8ae93570bff06 2208 PANTHER PTHR10887:SF340 688 771 5.5E-61 T 22-04-2016 PP4_RS13315 543e2a6b52dd28b087f8ae93570bff06 2208 SUPERFAMILY SSF52540 1513 1844 9.41E-29 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS13315 543e2a6b52dd28b087f8ae93570bff06 2208 SUPERFAMILY SSF52980 1846 1964 4.4E-17 T 22-04-2016 IPR011335 Restriction endonuclease type II-like PP4_RS13315 543e2a6b52dd28b087f8ae93570bff06 2208 PANTHER PTHR10887 12 19 5.5E-61 T 22-04-2016 PP4_RS13315 543e2a6b52dd28b087f8ae93570bff06 2208 PANTHER PTHR10887 1450 1809 5.5E-61 T 22-04-2016 PP4_RS13315 543e2a6b52dd28b087f8ae93570bff06 2208 PANTHER PTHR10887 688 771 5.5E-61 T 22-04-2016 PP4_RS13315 543e2a6b52dd28b087f8ae93570bff06 2208 SUPERFAMILY SSF52540 687 769 6.21E-15 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS13315 543e2a6b52dd28b087f8ae93570bff06 2208 Pfam PF13195 Protein of unknown function (DUF4011) 405 577 1.2E-44 T 22-04-2016 IPR025103 Protein of unknown function DUF4011 PP4_RS13315 543e2a6b52dd28b087f8ae93570bff06 2208 Pfam PF13087 AAA domain 1614 1810 1.6E-15 T 22-04-2016 PP4_RS13315 543e2a6b52dd28b087f8ae93570bff06 2208 Pfam PF13086 AAA domain 1551 1594 9.3E-9 T 22-04-2016 PP4_RS13315 543e2a6b52dd28b087f8ae93570bff06 2208 Pfam PF13245 Part of AAA domain 699 753 3.2E-7 T 22-04-2016 PP4_RS10885 fe471553a4fcc4e5a6a479da9beb0c60 290 PANTHER PTHR33711:SF6 1 285 3.3E-102 T 22-04-2016 PP4_RS10885 fe471553a4fcc4e5a6a479da9beb0c60 290 Pfam PF04444 Catechol dioxygenase N terminus 22 95 3.2E-33 T 22-04-2016 IPR007535 Catechol dioxygenase, N-terminal GO:0005506|GO:0009712|GO:0018576|GO:0055114 PP4_RS10885 fe471553a4fcc4e5a6a479da9beb0c60 290 Gene3D G3DSA:2.60.130.10 1 287 2.4E-98 T 22-04-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 PP4_RS10885 fe471553a4fcc4e5a6a479da9beb0c60 290 SUPERFAMILY SSF49482 1 287 1.09E-95 T 22-04-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 PP4_RS10885 fe471553a4fcc4e5a6a479da9beb0c60 290 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 129 157 - T 22-04-2016 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 PP4_RS10885 fe471553a4fcc4e5a6a479da9beb0c60 290 Pfam PF00775 Dioxygenase 100 286 1.0E-48 T 22-04-2016 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 PP4_RS10885 fe471553a4fcc4e5a6a479da9beb0c60 290 PANTHER PTHR33711 1 285 3.3E-102 T 22-04-2016 PP4_RS20630 a112ff1d22f9ca0107f01b5e3f0b7f47 173 PIRSF PIRSF006135 1 171 7.6E-55 T 22-04-2016 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00030+2.7.1.15|KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148|UniPathway: UPA00148 PP4_RS20630 a112ff1d22f9ca0107f01b5e3f0b7f47 173 SUPERFAMILY SSF52540 4 169 1.26E-54 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS20630 a112ff1d22f9ca0107f01b5e3f0b7f47 173 PANTHER PTHR34848 1 171 1.4E-75 T 22-04-2016 PP4_RS20630 a112ff1d22f9ca0107f01b5e3f0b7f47 173 Gene3D G3DSA:3.40.50.300 3 169 5.9E-64 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS20630 a112ff1d22f9ca0107f01b5e3f0b7f47 173 Pfam PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase 4 167 5.1E-61 T 22-04-2016 IPR003203 Cobinamide kinase/cobinamide phosphate guanyltransferase GO:0000166|GO:0009236|GO:0043752|GO:0051188 KEGG: 00030+2.7.1.15|KEGG: 00860+2.7.7.62+2.7.1.156|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148|UniPathway: UPA00148 PP4_RS12580 3f8ee012226533f2811271819ff99cb4 461 Gene3D G3DSA:1.20.1250.20 15 200 9.4E-40 T 22-04-2016 PP4_RS12580 3f8ee012226533f2811271819ff99cb4 461 PANTHER PTHR24064:SF234 2 427 2.1E-150 T 22-04-2016 PP4_RS12580 3f8ee012226533f2811271819ff99cb4 461 SUPERFAMILY SSF103473 7 434 5.75E-80 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS12580 3f8ee012226533f2811271819ff99cb4 461 ProSitePatterns PS00217 Sugar transport proteins signature 2. 119 144 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PP4_RS12580 3f8ee012226533f2811271819ff99cb4 461 Pfam PF07690 Major Facilitator Superfamily 28 397 3.4E-49 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS12580 3f8ee012226533f2811271819ff99cb4 461 PANTHER PTHR24064 2 427 2.1E-150 T 22-04-2016 PP4_RS12580 3f8ee012226533f2811271819ff99cb4 461 Gene3D G3DSA:1.20.1250.20 257 434 4.9E-22 T 22-04-2016 PP4_RS12580 3f8ee012226533f2811271819ff99cb4 461 ProSitePatterns PS00216 Sugar transport proteins signature 1. 77 93 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PP4_RS20990 963a4c4c2d0e569ac71566fceb97dd21 146 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 2 142 6.9E-63 T 22-04-2016 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 PP4_RS20990 963a4c4c2d0e569ac71566fceb97dd21 146 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 2 145 35.458 T 22-04-2016 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 PP4_RS20990 963a4c4c2d0e569ac71566fceb97dd21 146 Gene3D G3DSA:3.10.129.10 1 142 2.8E-58 T 22-04-2016 IPR029069 HotDog domain PP4_RS20990 963a4c4c2d0e569ac71566fceb97dd21 146 Pfam PF07977 FabA-like domain 11 137 1.8E-38 T 22-04-2016 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 PP4_RS20990 963a4c4c2d0e569ac71566fceb97dd21 146 SUPERFAMILY SSF54637 1 142 2.86E-51 T 22-04-2016 IPR029069 HotDog domain PP4_RS20990 963a4c4c2d0e569ac71566fceb97dd21 146 PANTHER PTHR30272 1 146 1.1E-79 T 22-04-2016 PP4_RS12405 4a0f2aa197a7e481ea9629b3749a1471 865 PANTHER PTHR11638:SF122 1 143 0.0 T 22-04-2016 PP4_RS12405 4a0f2aa197a7e481ea9629b3749a1471 865 Gene3D G3DSA:1.10.8.60 782 844 2.1E-10 T 22-04-2016 PP4_RS12405 4a0f2aa197a7e481ea9629b3749a1471 865 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 646 664 1.5E-32 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 PP4_RS12405 4a0f2aa197a7e481ea9629b3749a1471 865 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 675 693 1.5E-32 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 PP4_RS12405 4a0f2aa197a7e481ea9629b3749a1471 865 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 601 619 1.5E-32 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 PP4_RS12405 4a0f2aa197a7e481ea9629b3749a1471 865 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 708 722 1.5E-32 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 PP4_RS12405 4a0f2aa197a7e481ea9629b3749a1471 865 Gene3D G3DSA:1.10.8.60 366 449 3.8E-28 T 22-04-2016 PP4_RS12405 4a0f2aa197a7e481ea9629b3749a1471 865 SUPERFAMILY SSF52540 546 848 2.9E-65 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS12405 4a0f2aa197a7e481ea9629b3749a1471 865 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 225 337 6.4E-9 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 PP4_RS12405 4a0f2aa197a7e481ea9629b3749a1471 865 PANTHER PTHR11638 164 853 0.0 T 22-04-2016 PP4_RS12405 4a0f2aa197a7e481ea9629b3749a1471 865 Gene3D G3DSA:1.10.1780.10 7 138 3.2E-19 T 22-04-2016 IPR004176 Clp, N-terminal GO:0019538 PP4_RS12405 4a0f2aa197a7e481ea9629b3749a1471 865 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 21 73 4.5E-5 T 22-04-2016 IPR004176 Clp, N-terminal GO:0019538 PP4_RS12405 4a0f2aa197a7e481ea9629b3749a1471 865 SUPERFAMILY SSF81923 9 127 1.08E-17 T 22-04-2016 IPR004176 Clp, N-terminal GO:0019538 PP4_RS12405 4a0f2aa197a7e481ea9629b3749a1471 865 Gene3D G3DSA:3.40.50.300 182 364 5.2E-42 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS12405 4a0f2aa197a7e481ea9629b3749a1471 865 PANTHER PTHR11638 1 143 0.0 T 22-04-2016 PP4_RS12405 4a0f2aa197a7e481ea9629b3749a1471 865 SUPERFAMILY SSF52540 181 504 1.03E-71 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS12405 4a0f2aa197a7e481ea9629b3749a1471 865 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 631 649 - T 22-04-2016 IPR028299 ClpA/B, conserved site 2 PP4_RS12405 4a0f2aa197a7e481ea9629b3749a1471 865 SMART SM01086 769 862 1.0E-8 T 22-04-2016 IPR019489 Clp ATPase, C-terminal PP4_RS12405 4a0f2aa197a7e481ea9629b3749a1471 865 Gene3D G3DSA:3.40.50.300 550 781 4.8E-47 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS12405 4a0f2aa197a7e481ea9629b3749a1471 865 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 316 328 - T 22-04-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 PP4_RS12405 4a0f2aa197a7e481ea9629b3749a1471 865 Pfam PF07724 AAA domain (Cdc48 subfamily) 596 763 6.5E-42 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 PP4_RS12405 4a0f2aa197a7e481ea9629b3749a1471 865 SMART SM00382 597 737 5.7E-9 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS12405 4a0f2aa197a7e481ea9629b3749a1471 865 SMART SM00382 220 365 3.7E-10 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS12405 4a0f2aa197a7e481ea9629b3749a1471 865 PANTHER PTHR11638:SF122 164 853 0.0 T 22-04-2016 PP4_RS12405 4a0f2aa197a7e481ea9629b3749a1471 865 TIGRFAM TIGR03345 VI_ClpV1: type VI secretion ATPase, ClpV1 family 10 853 0.0 T 22-04-2016 IPR017729 Type VI secretion system, ATPase ClpV1 PP4_RS12405 4a0f2aa197a7e481ea9629b3749a1471 865 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 772 843 7.4E-13 T 22-04-2016 IPR019489 Clp ATPase, C-terminal PP4_RS12855 74f7b3d82bd76db750be6aca52b07ce6 336 PRINTS PR00410 Phenol hydroxylase reductase family signature 136 148 3.3E-24 T 22-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PP4_RS12855 74f7b3d82bd76db750be6aca52b07ce6 336 PRINTS PR00410 Phenol hydroxylase reductase family signature 300 308 3.3E-24 T 22-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PP4_RS12855 74f7b3d82bd76db750be6aca52b07ce6 336 PRINTS PR00410 Phenol hydroxylase reductase family signature 236 245 3.3E-24 T 22-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PP4_RS12855 74f7b3d82bd76db750be6aca52b07ce6 336 PRINTS PR00410 Phenol hydroxylase reductase family signature 153 160 3.3E-24 T 22-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PP4_RS12855 74f7b3d82bd76db750be6aca52b07ce6 336 PRINTS PR00410 Phenol hydroxylase reductase family signature 211 230 3.3E-24 T 22-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PP4_RS12855 74f7b3d82bd76db750be6aca52b07ce6 336 PRINTS PR00410 Phenol hydroxylase reductase family signature 196 205 3.3E-24 T 22-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PP4_RS12855 74f7b3d82bd76db750be6aca52b07ce6 336 PANTHER PTHR19370 1 332 8.6E-63 T 22-04-2016 PP4_RS12855 74f7b3d82bd76db750be6aca52b07ce6 336 Pfam PF00175 Oxidoreductase NAD-binding domain 212 314 2.1E-21 T 22-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 PP4_RS12855 74f7b3d82bd76db750be6aca52b07ce6 336 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 10 85 5.5E-16 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS12855 74f7b3d82bd76db750be6aca52b07ce6 336 SUPERFAMILY SSF54292 1 99 6.95E-28 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS12855 74f7b3d82bd76db750be6aca52b07ce6 336 SUPERFAMILY SSF52343 204 333 2.49E-35 T 22-04-2016 PP4_RS12855 74f7b3d82bd76db750be6aca52b07ce6 336 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 211 230 2.0E-6 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS12855 74f7b3d82bd76db750be6aca52b07ce6 336 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 300 308 2.0E-6 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS12855 74f7b3d82bd76db750be6aca52b07ce6 336 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 153 160 2.0E-6 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS12855 74f7b3d82bd76db750be6aca52b07ce6 336 Pfam PF00970 Oxidoreductase FAD-binding domain 110 202 1.8E-17 T 22-04-2016 IPR008333 Oxidoreductase, FAD-binding domain PP4_RS12855 74f7b3d82bd76db750be6aca52b07ce6 336 PANTHER PTHR19370:SF128 1 332 8.6E-63 T 22-04-2016 PP4_RS12855 74f7b3d82bd76db750be6aca52b07ce6 336 SUPERFAMILY SSF63380 76 205 1.87E-24 T 22-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 PP4_RS12855 74f7b3d82bd76db750be6aca52b07ce6 336 Gene3D G3DSA:3.10.20.30 2 100 2.0E-28 T 22-04-2016 IPR012675 Beta-grasp domain PP4_RS12855 74f7b3d82bd76db750be6aca52b07ce6 336 Gene3D G3DSA:3.40.50.80 207 333 2.0E-36 T 22-04-2016 PP4_RS12855 74f7b3d82bd76db750be6aca52b07ce6 336 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 40 48 - T 22-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 PP4_RS12855 74f7b3d82bd76db750be6aca52b07ce6 336 Gene3D G3DSA:2.40.30.10 106 198 2.4E-22 T 22-04-2016 PP4_RS09550 5389bdb8a40ff8aaf0d4e3597abd1ea3 431 Gene3D G3DSA:3.50.50.60 10 94 8.8E-63 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS09550 5389bdb8a40ff8aaf0d4e3597abd1ea3 431 Gene3D G3DSA:3.50.50.60 152 230 8.8E-63 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS09550 5389bdb8a40ff8aaf0d4e3597abd1ea3 431 Gene3D G3DSA:3.50.50.60 373 430 8.8E-63 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS09550 5389bdb8a40ff8aaf0d4e3597abd1ea3 431 PANTHER PTHR13847 1 261 5.5E-60 T 22-04-2016 PP4_RS09550 5389bdb8a40ff8aaf0d4e3597abd1ea3 431 PANTHER PTHR13847 282 430 5.5E-60 T 22-04-2016 PP4_RS09550 5389bdb8a40ff8aaf0d4e3597abd1ea3 431 SUPERFAMILY SSF51905 19 231 7.45E-58 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS09550 5389bdb8a40ff8aaf0d4e3597abd1ea3 431 SUPERFAMILY SSF51905 373 430 7.45E-58 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS09550 5389bdb8a40ff8aaf0d4e3597abd1ea3 431 Pfam PF01266 FAD dependent oxidoreductase 20 412 9.4E-67 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PP4_RS09550 5389bdb8a40ff8aaf0d4e3597abd1ea3 431 Gene3D G3DSA:3.30.9.10 231 372 2.1E-27 T 22-04-2016 PP4_RS09550 5389bdb8a40ff8aaf0d4e3597abd1ea3 431 Gene3D G3DSA:3.30.9.10 98 151 2.1E-27 T 22-04-2016 PP4_RS14240 a3d5f20b2a42e267548a8cbe5cfca42f 179 TIGRFAM TIGR01313 therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family 8 166 4.3E-58 T 22-04-2016 IPR006001 Carbohydrate kinase, thermoresistant glucokinase GO:0005975|GO:0016301 KEGG: 00030+2.7.1.12|MetaCyc: PWY-5530|UniPathway: UPA00792 PP4_RS14240 a3d5f20b2a42e267548a8cbe5cfca42f 179 SUPERFAMILY SSF52540 7 170 9.46E-26 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS14240 a3d5f20b2a42e267548a8cbe5cfca42f 179 PANTHER PTHR11603 1 169 8.9E-69 T 22-04-2016 PP4_RS14240 a3d5f20b2a42e267548a8cbe5cfca42f 179 Gene3D G3DSA:3.40.50.300 6 168 1.0E-58 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS14240 a3d5f20b2a42e267548a8cbe5cfca42f 179 Pfam PF01202 Shikimate kinase 15 122 1.6E-5 T 22-04-2016 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 PP4_RS21480 c690fd24816c86e8dc8e423ddb39efb9 122 PANTHER PTHR38779 1 122 4.5E-12 T 22-04-2016 PP4_RS21480 c690fd24816c86e8dc8e423ddb39efb9 122 Pfam PF02501 Type II secretion system (T2SS), protein I 41 119 5.3E-12 T 22-04-2016 IPR003413 Type II secretion system protein I domain GO:0008565|GO:0015627|GO:0015628 PP4_RS21480 c690fd24816c86e8dc8e423ddb39efb9 122 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 27 9.9E-9 T 22-04-2016 IPR012902 Prokaryotic N-terminal methylation site PP4_RS21480 c690fd24816c86e8dc8e423ddb39efb9 122 Gene3D G3DSA:3.30.1300.30 39 113 5.5E-4 T 22-04-2016 PP4_RS21480 c690fd24816c86e8dc8e423ddb39efb9 122 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 6 26 - T 22-04-2016 IPR012902 Prokaryotic N-terminal methylation site PP4_RS21480 c690fd24816c86e8dc8e423ddb39efb9 122 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 3 26 5.8E-8 T 22-04-2016 IPR012902 Prokaryotic N-terminal methylation site PP4_RS21480 c690fd24816c86e8dc8e423ddb39efb9 122 SUPERFAMILY SSF54523 40 112 7.77E-6 T 22-04-2016 PP4_RS10535 24d6d563a6f3a018117b00033b11b540 238 SMART SM00382 29 232 7.4E-11 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS10535 24d6d563a6f3a018117b00033b11b540 238 SUPERFAMILY SSF52540 3 236 4.11E-58 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS10535 24d6d563a6f3a018117b00033b11b540 238 Pfam PF00005 ABC transporter 21 166 3.1E-30 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS10535 24d6d563a6f3a018117b00033b11b540 238 PANTHER PTHR24220:SF568 6 238 2.9E-120 T 22-04-2016 PP4_RS10535 24d6d563a6f3a018117b00033b11b540 238 PIRSF PIRSF039137 1 238 4.1E-104 T 22-04-2016 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 PP4_RS10535 24d6d563a6f3a018117b00033b11b540 238 PANTHER PTHR24220 6 238 2.9E-120 T 22-04-2016 PP4_RS10535 24d6d563a6f3a018117b00033b11b540 238 Gene3D G3DSA:3.40.50.300 2 234 1.4E-61 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS10535 24d6d563a6f3a018117b00033b11b540 238 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS26865 38e2286cab0b062d6b9399902da03b8d 182 Gene3D G3DSA:1.10.260.40 2 69 2.3E-22 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS26865 38e2286cab0b062d6b9399902da03b8d 182 SMART SM00530 6 61 1.2E-13 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS26865 38e2286cab0b062d6b9399902da03b8d 182 Pfam PF07883 Cupin domain 108 175 3.6E-18 T 22-04-2016 IPR013096 Cupin 2, conserved barrel PP4_RS26865 38e2286cab0b062d6b9399902da03b8d 182 SUPERFAMILY SSF51182 68 182 1.09E-25 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS26865 38e2286cab0b062d6b9399902da03b8d 182 Pfam PF01381 Helix-turn-helix 10 60 2.8E-13 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS26865 38e2286cab0b062d6b9399902da03b8d 182 SUPERFAMILY SSF47413 3 67 5.63E-16 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS26865 38e2286cab0b062d6b9399902da03b8d 182 PANTHER PTHR10245:SF42 1 182 4.6E-99 T 22-04-2016 PP4_RS26865 38e2286cab0b062d6b9399902da03b8d 182 PANTHER PTHR10245 1 182 4.6E-99 T 22-04-2016 PP4_RS26865 38e2286cab0b062d6b9399902da03b8d 182 Gene3D G3DSA:2.60.120.10 80 182 1.6E-19 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS04365 b679ec5bebfe3c2885f93f49274e0ecd 405 PANTHER PTHR23100:SF0 16 405 8.4E-174 T 22-04-2016 PP4_RS04365 b679ec5bebfe3c2885f93f49274e0ecd 405 Pfam PF01960 ArgJ family 21 405 1.0E-137 T 22-04-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 PP4_RS04365 b679ec5bebfe3c2885f93f49274e0ecd 405 TIGRFAM TIGR00120 ArgJ: glutamate N-acetyltransferase/amino-acid acetyltransferase 14 405 3.4E-116 T 22-04-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 PP4_RS04365 b679ec5bebfe3c2885f93f49274e0ecd 405 SUPERFAMILY SSF56266 14 402 1.19E-133 T 22-04-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 PP4_RS04365 b679ec5bebfe3c2885f93f49274e0ecd 405 Hamap MF_01106 Arginine biosynthesis bifunctional protein ArgJ [argJ]. 1 405 155.074 T 22-04-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 PP4_RS04365 b679ec5bebfe3c2885f93f49274e0ecd 405 PANTHER PTHR23100 16 405 8.4E-174 T 22-04-2016 IPR002813 Arginine biosynthesis protein ArgJ GO:0004358|GO:0006526 KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 PP4_RS04365 b679ec5bebfe3c2885f93f49274e0ecd 405 ProDom PD004193 ACETYLTRANSFERASE ORNITHINE ARGININE BIOSYNTHESIS ARGJ GLUTAMATE N-ACETYLTRANSFERASE TRANSFERASE ACYLTRANSFERASE BIFUNCTIONAL 22 405 0.0 T 22-04-2016 PP4_RS04365 b679ec5bebfe3c2885f93f49274e0ecd 405 Gene3D G3DSA:3.60.70.12 11 276 2.1E-94 T 22-04-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 PP4_RS13750 101635549afed4ff638c6f0b82d34e90 326 Gene3D G3DSA:1.10.10.10 173 313 2.1E-12 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS13750 101635549afed4ff638c6f0b82d34e90 326 Pfam PF01613 Flavin reductase like domain 17 158 1.1E-31 T 22-04-2016 IPR002563 Flavin reductase like domain GO:0010181 PP4_RS13750 101635549afed4ff638c6f0b82d34e90 326 PANTHER PTHR30466 8 196 1.6E-38 T 22-04-2016 PP4_RS13750 101635549afed4ff638c6f0b82d34e90 326 SUPERFAMILY SSF46785 175 314 4.91E-15 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS13750 101635549afed4ff638c6f0b82d34e90 326 PANTHER PTHR30466:SF2 8 196 1.6E-38 T 22-04-2016 PP4_RS13750 101635549afed4ff638c6f0b82d34e90 326 SMART SM00903 16 159 1.3E-53 T 22-04-2016 IPR002563 Flavin reductase like domain GO:0010181 PP4_RS13750 101635549afed4ff638c6f0b82d34e90 326 SUPERFAMILY SSF50475 7 157 1.57E-44 T 22-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 PP4_RS13750 101635549afed4ff638c6f0b82d34e90 326 Gene3D G3DSA:2.30.110.10 5 157 3.2E-53 T 22-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 PP4_RS21660 154a44e09b8f622fd02e410ad1fd36ac 302 PANTHER PTHR30193 9 300 3.1E-141 T 22-04-2016 PP4_RS21660 154a44e09b8f622fd02e410ad1fd36ac 302 Gene3D G3DSA:1.10.3720.10 68 293 1.2E-54 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS21660 154a44e09b8f622fd02e410ad1fd36ac 302 PANTHER PTHR30193:SF29 9 300 3.1E-141 T 22-04-2016 PP4_RS21660 154a44e09b8f622fd02e410ad1fd36ac 302 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 289 1.1E-13 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS21660 154a44e09b8f622fd02e410ad1fd36ac 302 SUPERFAMILY SSF161098 62 288 1.57E-50 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS06630 80814ff9195b0f99ae485aa193a7d7e7 521 SUPERFAMILY SSF58104 265 521 3.53E-75 T 22-04-2016 PP4_RS06630 80814ff9195b0f99ae485aa193a7d7e7 521 Gene3D G3DSA:3.30.450.20 20 112 1.9E-23 T 22-04-2016 PP4_RS06630 80814ff9195b0f99ae485aa193a7d7e7 521 SMART SM00283 259 520 3.5E-69 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS06630 80814ff9195b0f99ae485aa193a7d7e7 521 PANTHER PTHR32089:SF64 51 521 1.0E-120 T 22-04-2016 PP4_RS06630 80814ff9195b0f99ae485aa193a7d7e7 521 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 312 519 3.6E-49 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS06630 80814ff9195b0f99ae485aa193a7d7e7 521 SMART SM00091 8 74 0.004 T 22-04-2016 IPR000014 PAS domain PP4_RS06630 80814ff9195b0f99ae485aa193a7d7e7 521 Gene3D G3DSA:1.10.287.950 274 490 2.3E-56 T 22-04-2016 PP4_RS06630 80814ff9195b0f99ae485aa193a7d7e7 521 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 13 123 1.9E-12 T 22-04-2016 IPR000014 PAS domain PP4_RS06630 80814ff9195b0f99ae485aa193a7d7e7 521 PANTHER PTHR32089 51 521 1.0E-120 T 22-04-2016 PP4_RS06630 80814ff9195b0f99ae485aa193a7d7e7 521 SUPERFAMILY SSF55785 21 114 1.71E-26 T 22-04-2016 IPR000014 PAS domain PP4_RS06630 80814ff9195b0f99ae485aa193a7d7e7 521 Pfam PF08447 PAS fold 31 113 1.9E-14 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 PP4_RS19500 1954aa600179b0941d04eb4029b9219c 78 PANTHER PTHR20863 4 76 4.6E-32 T 22-04-2016 PP4_RS19500 1954aa600179b0941d04eb4029b9219c 78 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 1 77 1.7E-36 T 22-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 PP4_RS19500 1954aa600179b0941d04eb4029b9219c 78 SUPERFAMILY SSF47336 2 76 5.89E-24 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS19500 1954aa600179b0941d04eb4029b9219c 78 Gene3D G3DSA:1.10.1200.10 3 76 4.1E-36 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS19500 1954aa600179b0941d04eb4029b9219c 78 ProSitePatterns PS00012 Phosphopantetheine attachment site. 32 47 - T 22-04-2016 IPR006162 Phosphopantetheine attachment site PP4_RS19500 1954aa600179b0941d04eb4029b9219c 78 Pfam PF00550 Phosphopantetheine attachment site 6 73 4.0E-17 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS19500 1954aa600179b0941d04eb4029b9219c 78 Hamap MF_01217 Acyl carrier protein [acpP]. 3 77 22.805 T 22-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 PP4_RS19500 1954aa600179b0941d04eb4029b9219c 78 ProDom PD000887 CARRIER ACYL PHOSPHOPANTETHEINE ACP ACID FATTY BIOSYNTHESIS LIPID SYNTHESIS CHLOROPLAST 41 76 7.0E-4 T 22-04-2016 IPR003231 Acyl carrier protein (ACP) GO:0006633 UniPathway: UPA00094 PP4_RS08575 547ca935127b2039aeac8089afacdd70 338 Pfam PF00850 Histone deacetylase domain 52 333 1.8E-69 T 22-04-2016 IPR023801 Histone deacetylase domain PP4_RS08575 547ca935127b2039aeac8089afacdd70 338 SUPERFAMILY SSF52768 2 336 4.32E-87 T 22-04-2016 PP4_RS08575 547ca935127b2039aeac8089afacdd70 338 PANTHER PTHR10625:SF121 23 88 6.2E-72 T 22-04-2016 PP4_RS08575 547ca935127b2039aeac8089afacdd70 338 PANTHER PTHR10625:SF121 111 330 6.2E-72 T 22-04-2016 PP4_RS08575 547ca935127b2039aeac8089afacdd70 338 Gene3D G3DSA:3.40.800.20 15 333 1.3E-78 T 22-04-2016 IPR023801 Histone deacetylase domain PP4_RS08575 547ca935127b2039aeac8089afacdd70 338 PANTHER PTHR10625 23 88 6.2E-72 T 22-04-2016 IPR000286 Histone deacetylase superfamily PP4_RS08575 547ca935127b2039aeac8089afacdd70 338 PANTHER PTHR10625 111 330 6.2E-72 T 22-04-2016 IPR000286 Histone deacetylase superfamily PP4_RS08575 547ca935127b2039aeac8089afacdd70 338 PRINTS PR01270 Histone deacetylase superfamily signature 271 281 4.8E-15 T 22-04-2016 IPR000286 Histone deacetylase superfamily PP4_RS08575 547ca935127b2039aeac8089afacdd70 338 PRINTS PR01270 Histone deacetylase superfamily signature 185 200 4.8E-15 T 22-04-2016 IPR000286 Histone deacetylase superfamily PP4_RS08575 547ca935127b2039aeac8089afacdd70 338 PRINTS PR01270 Histone deacetylase superfamily signature 153 176 4.8E-15 T 22-04-2016 IPR000286 Histone deacetylase superfamily PP4_RS17830 f2275857e8a4ec5fa95b7c5cfad7e07e 506 PANTHER PTHR34219:SF4 1 493 1.1E-164 T 22-04-2016 PP4_RS17830 f2275857e8a4ec5fa95b7c5cfad7e07e 506 Pfam PF03929 PepSY-associated TM region 10 357 1.3E-57 T 22-04-2016 IPR005625 PepSY-associated TM protein PP4_RS17830 f2275857e8a4ec5fa95b7c5cfad7e07e 506 PANTHER PTHR34219 1 493 1.1E-164 T 22-04-2016 PP4_RS14125 a7332c2f18fe20cfab419f7e97e11abc 738 Gene3D G3DSA:2.40.170.20 188 738 5.4E-93 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS14125 a7332c2f18fe20cfab419f7e97e11abc 738 Pfam PF00593 TonB dependent receptor 478 735 1.5E-29 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS14125 a7332c2f18fe20cfab419f7e97e11abc 738 PANTHER PTHR32552 470 738 3.5E-98 T 22-04-2016 PP4_RS14125 a7332c2f18fe20cfab419f7e97e11abc 738 PANTHER PTHR32552 7 449 3.5E-98 T 22-04-2016 PP4_RS14125 a7332c2f18fe20cfab419f7e97e11abc 738 SUPERFAMILY SSF56935 36 738 2.14E-123 T 22-04-2016 PP4_RS14125 a7332c2f18fe20cfab419f7e97e11abc 738 Gene3D G3DSA:2.170.130.10 37 174 6.5E-32 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS14125 a7332c2f18fe20cfab419f7e97e11abc 738 Pfam PF07715 TonB-dependent Receptor Plug Domain 59 167 1.9E-18 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS14125 a7332c2f18fe20cfab419f7e97e11abc 738 PANTHER PTHR32552:SF33 470 738 3.5E-98 T 22-04-2016 PP4_RS14125 a7332c2f18fe20cfab419f7e97e11abc 738 PANTHER PTHR32552:SF33 7 449 3.5E-98 T 22-04-2016 PP4_RS14980 4101f5cbc8ed404bc71dfdd632f71c79 567 ProSitePatterns PS00145 Urease active site. 317 333 - T 22-04-2016 IPR017950 Urease active site GO:0009039 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 PP4_RS14980 4101f5cbc8ed404bc71dfdd632f71c79 567 TIGRFAM TIGR01792 urease_alph: urease, alpha subunit 3 567 4.5E-288 T 22-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 PP4_RS14980 4101f5cbc8ed404bc71dfdd632f71c79 567 Gene3D G3DSA:2.30.40.10 65 143 1.1E-15 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PP4_RS14980 4101f5cbc8ed404bc71dfdd632f71c79 567 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 295 312 1.1E-34 T 22-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 PP4_RS14980 4101f5cbc8ed404bc71dfdd632f71c79 567 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 334 350 1.1E-34 T 22-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 PP4_RS14980 4101f5cbc8ed404bc71dfdd632f71c79 567 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 427 440 1.1E-34 T 22-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 PP4_RS14980 4101f5cbc8ed404bc71dfdd632f71c79 567 PRINTS PR01752 Urea amidohydrolase (urease) protein signature 401 416 1.1E-34 T 22-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 PP4_RS14980 4101f5cbc8ed404bc71dfdd632f71c79 567 ProSitePatterns PS01120 Urease nickel ligands signature. 127 140 - T 22-04-2016 IPR029754 Urease nickel binding site GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 PP4_RS14980 4101f5cbc8ed404bc71dfdd632f71c79 567 Pfam PF00449 Urease alpha-subunit, N-terminal domain 3 119 1.8E-55 T 22-04-2016 IPR011612 Urease alpha-subunit, N-terminal domain KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 PP4_RS14980 4101f5cbc8ed404bc71dfdd632f71c79 567 Hamap MF_01953 Urease subunit alpha [ureC]. 2 567 56.531 T 22-04-2016 IPR005848 Urease, alpha subunit GO:0006807|GO:0009039|GO:0016151 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 PP4_RS14980 4101f5cbc8ed404bc71dfdd632f71c79 567 SUPERFAMILY SSF51556 481 567 1.73E-195 T 22-04-2016 IPR032466 Metal-dependent hydrolase PP4_RS14980 4101f5cbc8ed404bc71dfdd632f71c79 567 SUPERFAMILY SSF51556 129 432 1.73E-195 T 22-04-2016 IPR032466 Metal-dependent hydrolase PP4_RS14980 4101f5cbc8ed404bc71dfdd632f71c79 567 SUPERFAMILY SSF51338 2 177 1.42E-62 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PP4_RS14980 4101f5cbc8ed404bc71dfdd632f71c79 567 Gene3D G3DSA:3.20.20.140 488 565 9.1E-205 T 22-04-2016 PP4_RS14980 4101f5cbc8ed404bc71dfdd632f71c79 567 Gene3D G3DSA:3.20.20.140 144 429 9.1E-205 T 22-04-2016 PP4_RS14980 4101f5cbc8ed404bc71dfdd632f71c79 567 SUPERFAMILY SSF51338 423 477 4.05E-6 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PP4_RS14980 4101f5cbc8ed404bc71dfdd632f71c79 567 PANTHER PTHR22642 24 296 1.6E-251 T 22-04-2016 PP4_RS14980 4101f5cbc8ed404bc71dfdd632f71c79 567 PANTHER PTHR22642 320 501 1.6E-251 T 22-04-2016 PP4_RS14980 4101f5cbc8ed404bc71dfdd632f71c79 567 PANTHER PTHR22642:SF7 24 296 1.6E-251 T 22-04-2016 PP4_RS14980 4101f5cbc8ed404bc71dfdd632f71c79 567 PANTHER PTHR22642:SF7 320 501 1.6E-251 T 22-04-2016 PP4_RS14980 4101f5cbc8ed404bc71dfdd632f71c79 567 Pfam PF01979 Amidohydrolase family 125 453 5.7E-80 T 22-04-2016 IPR006680 Amidohydrolase-related GO:0016787 PP4_RS19800 7d473a3c9194413b7660f29a22d5b541 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 3.9E-19 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS19800 7d473a3c9194413b7660f29a22d5b541 317 Gene3D G3DSA:3.40.190.10 178 265 1.7E-16 T 22-04-2016 PP4_RS19800 7d473a3c9194413b7660f29a22d5b541 317 SUPERFAMILY SSF53850 91 300 1.23E-41 T 22-04-2016 PP4_RS19800 7d473a3c9194413b7660f29a22d5b541 317 Gene3D G3DSA:3.40.190.10 94 177 5.4E-19 T 22-04-2016 PP4_RS19800 7d473a3c9194413b7660f29a22d5b541 317 Pfam PF03466 LysR substrate binding domain 90 297 4.6E-41 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS19800 7d473a3c9194413b7660f29a22d5b541 317 PANTHER PTHR30537:SF5 1 314 1.8E-105 T 22-04-2016 PP4_RS19800 7d473a3c9194413b7660f29a22d5b541 317 Gene3D G3DSA:1.10.10.10 6 87 2.2E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS19800 7d473a3c9194413b7660f29a22d5b541 317 SUPERFAMILY SSF46785 6 89 2.72E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS19800 7d473a3c9194413b7660f29a22d5b541 317 PANTHER PTHR30537 1 314 1.8E-105 T 22-04-2016 PP4_RS19800 7d473a3c9194413b7660f29a22d5b541 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 4.6E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS19800 7d473a3c9194413b7660f29a22d5b541 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 4.6E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS19800 7d473a3c9194413b7660f29a22d5b541 317 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 4.6E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS04285 8083769b3254c91939a8757823a775ca 97 PANTHER PTHR37479:SF1 1 97 1.0E-32 T 22-04-2016 PP4_RS04285 8083769b3254c91939a8757823a775ca 97 Hamap MF_00910 Cell division protein FtsL [ftsL]. 12 95 15.053 T 22-04-2016 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 PP4_RS04285 8083769b3254c91939a8757823a775ca 97 PANTHER PTHR37479 1 97 1.0E-32 T 22-04-2016 PP4_RS04285 8083769b3254c91939a8757823a775ca 97 TIGRFAM TIGR02209 ftsL_broad: cell division protein FtsL 13 95 7.8E-25 T 22-04-2016 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 PP4_RS04285 8083769b3254c91939a8757823a775ca 97 Pfam PF04999 Cell division protein FtsL 3 96 4.6E-32 T 22-04-2016 IPR011922 Cell division protein FtsL GO:0007049|GO:0016021|GO:0051301 PP4_RS24845 f0c3b5a5aa6ff0e4191860a46454e074 210 PANTHER PTHR30055 1 204 4.1E-79 T 22-04-2016 PP4_RS24845 f0c3b5a5aa6ff0e4191860a46454e074 210 PANTHER PTHR30055:SF39 1 204 4.1E-79 T 22-04-2016 PP4_RS24845 f0c3b5a5aa6ff0e4191860a46454e074 210 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 61 6.2E-8 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS24845 f0c3b5a5aa6ff0e4191860a46454e074 210 SUPERFAMILY SSF46689 3 74 1.2E-12 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS24845 f0c3b5a5aa6ff0e4191860a46454e074 210 Gene3D G3DSA:1.10.357.10 3 196 1.9E-28 T 22-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PP4_RS06740 d0ed6df836713e169362e0fb7fe4a4ca 221 Pfam PF01300 Telomere recombination 34 210 1.4E-44 T 22-04-2016 IPR006070 YrdC-like domain GO:0003725 PP4_RS06740 d0ed6df836713e169362e0fb7fe4a4ca 221 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 19 212 2.7E-63 T 22-04-2016 IPR006070 YrdC-like domain GO:0003725 PP4_RS06740 d0ed6df836713e169362e0fb7fe4a4ca 221 SUPERFAMILY SSF55821 14 215 6.41E-64 T 22-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain PP4_RS06740 d0ed6df836713e169362e0fb7fe4a4ca 221 PANTHER PTHR17490:SF7 14 220 2.4E-89 T 22-04-2016 PP4_RS06740 d0ed6df836713e169362e0fb7fe4a4ca 221 Gene3D G3DSA:3.90.870.10 15 213 4.5E-63 T 22-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain PP4_RS06740 d0ed6df836713e169362e0fb7fe4a4ca 221 PANTHER PTHR17490 14 220 2.4E-89 T 22-04-2016 PP4_RS25250 1ae3dd2491381e37cf9d329a6d021323 492 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 155 180 - T 22-04-2016 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 PP4_RS25250 1ae3dd2491381e37cf9d329a6d021323 492 TIGRFAM TIGR02121 Na_Pro_sym: sodium/proline symporter 5 486 1.2E-223 T 22-04-2016 IPR011851 Sodium/proline symporter GO:0005298|GO:0006814|GO:0015824|GO:0016021|GO:0031402 PP4_RS25250 1ae3dd2491381e37cf9d329a6d021323 492 PANTHER PTHR11819:SF148 2 482 4.7E-197 T 22-04-2016 PP4_RS25250 1ae3dd2491381e37cf9d329a6d021323 492 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 33 435 1.0E-118 T 22-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 PP4_RS25250 1ae3dd2491381e37cf9d329a6d021323 492 Pfam PF00474 Sodium:solute symporter family 33 435 8.4E-135 T 22-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 PP4_RS25250 1ae3dd2491381e37cf9d329a6d021323 492 PANTHER PTHR11819 2 482 4.7E-197 T 22-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 PP4_RS18180 37e9878b43db1cea7387ae70be4aa393 566 PANTHER PTHR11709:SF33 243 356 1.7E-124 T 22-04-2016 PP4_RS18180 37e9878b43db1cea7387ae70be4aa393 566 PANTHER PTHR11709:SF33 42 202 1.7E-124 T 22-04-2016 PP4_RS18180 37e9878b43db1cea7387ae70be4aa393 566 PANTHER PTHR11709:SF33 422 566 1.7E-124 T 22-04-2016 PP4_RS18180 37e9878b43db1cea7387ae70be4aa393 566 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 6 32 1.3E-4 T 22-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal PP4_RS18180 37e9878b43db1cea7387ae70be4aa393 566 SUPERFAMILY SSF49503 412 564 1.33E-37 T 22-04-2016 IPR008972 Cupredoxin PP4_RS18180 37e9878b43db1cea7387ae70be4aa393 566 TIGRFAM TIGR01480 copper_res_A: copper-resistance protein, CopA family 6 564 5.0E-269 T 22-04-2016 IPR006376 Copper-resistance protein CopA GO:0005507|GO:0042597 PP4_RS18180 37e9878b43db1cea7387ae70be4aa393 566 PANTHER PTHR11709 243 356 1.7E-124 T 22-04-2016 PP4_RS18180 37e9878b43db1cea7387ae70be4aa393 566 PANTHER PTHR11709 42 202 1.7E-124 T 22-04-2016 PP4_RS18180 37e9878b43db1cea7387ae70be4aa393 566 PANTHER PTHR11709 422 566 1.7E-124 T 22-04-2016 PP4_RS18180 37e9878b43db1cea7387ae70be4aa393 566 Pfam PF07732 Multicopper oxidase 49 159 1.0E-39 T 22-04-2016 IPR011707 Multicopper oxidase, type 3 GO:0005507 PP4_RS18180 37e9878b43db1cea7387ae70be4aa393 566 SUPERFAMILY SSF49503 41 189 5.96E-40 T 22-04-2016 IPR008972 Cupredoxin PP4_RS18180 37e9878b43db1cea7387ae70be4aa393 566 SUPERFAMILY SSF49503 162 383 2.04E-54 T 22-04-2016 IPR008972 Cupredoxin PP4_RS18180 37e9878b43db1cea7387ae70be4aa393 566 Gene3D G3DSA:2.60.40.420 164 367 3.2E-50 T 22-04-2016 IPR008972 Cupredoxin PP4_RS18180 37e9878b43db1cea7387ae70be4aa393 566 Pfam PF00394 Multicopper oxidase 168 343 4.9E-30 T 22-04-2016 IPR001117 Multicopper oxidase, type 1 GO:0016491|GO:0055114 PP4_RS18180 37e9878b43db1cea7387ae70be4aa393 566 Gene3D G3DSA:2.60.40.420 38 162 2.6E-32 T 22-04-2016 IPR008972 Cupredoxin PP4_RS18180 37e9878b43db1cea7387ae70be4aa393 566 ProSitePatterns PS00079 Multicopper oxidases signature 1. 542 562 - T 22-04-2016 IPR033138 Multicopper oxidases, conserved site PP4_RS18180 37e9878b43db1cea7387ae70be4aa393 566 Gene3D G3DSA:2.60.40.420 445 565 1.6E-37 T 22-04-2016 IPR008972 Cupredoxin PP4_RS18180 37e9878b43db1cea7387ae70be4aa393 566 Pfam PF07731 Multicopper oxidase 449 565 5.6E-26 T 22-04-2016 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 PP4_RS18180 37e9878b43db1cea7387ae70be4aa393 566 ProSitePatterns PS00080 Multicopper oxidases signature 2. 547 558 - T 22-04-2016 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 PP4_RS23585 6a9349b7e882a93e46251201070640a6 462 TIGRFAM TIGR01942 pcnB: poly(A) polymerase 25 460 1.6E-204 T 22-04-2016 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 PP4_RS23585 6a9349b7e882a93e46251201070640a6 462 SUPERFAMILY SSF81891 186 421 7.46E-51 T 22-04-2016 PP4_RS23585 6a9349b7e882a93e46251201070640a6 462 Gene3D G3DSA:1.10.3090.10 188 422 2.7E-52 T 22-04-2016 PP4_RS23585 6a9349b7e882a93e46251201070640a6 462 Gene3D G3DSA:3.30.460.10 37 187 1.1E-50 T 22-04-2016 PP4_RS23585 6a9349b7e882a93e46251201070640a6 462 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 215 276 1.7E-20 T 22-04-2016 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain PP4_RS23585 6a9349b7e882a93e46251201070640a6 462 Pfam PF12626 Polymerase A arginine-rich C-terminus 330 449 3.8E-43 T 22-04-2016 IPR025866 Polymerase A arginine-rich C-terminal domain PP4_RS23585 6a9349b7e882a93e46251201070640a6 462 Pfam PF01743 Poly A polymerase head domain 56 188 7.9E-40 T 22-04-2016 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 PP4_RS23585 6a9349b7e882a93e46251201070640a6 462 SUPERFAMILY SSF81301 27 185 1.31E-41 T 22-04-2016 PP4_RS23585 6a9349b7e882a93e46251201070640a6 462 PANTHER PTHR13734 18 275 2.8E-125 T 22-04-2016 PP4_RS23585 6a9349b7e882a93e46251201070640a6 462 Hamap MF_00957 Poly(A) polymerase I [pcnB]. 20 451 37.465 T 22-04-2016 IPR010206 Poly(A) polymerase I GO:0003723|GO:0004652|GO:0006378 PP4_RS23585 6a9349b7e882a93e46251201070640a6 462 PANTHER PTHR13734:SF47 18 275 2.8E-125 T 22-04-2016 PP4_RS15380 727459c7c8325a32d7d684bf0e0dd78a 339 SMART SM00342 253 335 1.8E-9 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS15380 727459c7c8325a32d7d684bf0e0dd78a 339 Pfam PF12833 Helix-turn-helix domain 259 334 2.6E-12 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS15380 727459c7c8325a32d7d684bf0e0dd78a 339 PANTHER PTHR11019 249 333 2.6E-18 T 22-04-2016 PP4_RS15380 727459c7c8325a32d7d684bf0e0dd78a 339 Gene3D G3DSA:1.10.10.60 288 333 4.0E-6 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS15380 727459c7c8325a32d7d684bf0e0dd78a 339 PANTHER PTHR11019:SF52 249 333 2.6E-18 T 22-04-2016 PP4_RS15380 727459c7c8325a32d7d684bf0e0dd78a 339 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 29 208 4.8E-22 T 22-04-2016 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal PP4_RS15380 727459c7c8325a32d7d684bf0e0dd78a 339 SUPERFAMILY SSF46689 288 334 1.97E-6 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS15295 09fd5b2c63b6212ff29d57510de272f8 290 PANTHER PTHR24423:SF374 15 30 1.6E-76 T 22-04-2016 PP4_RS15295 09fd5b2c63b6212ff29d57510de272f8 290 PANTHER PTHR24423:SF374 52 290 1.6E-76 T 22-04-2016 PP4_RS15295 09fd5b2c63b6212ff29d57510de272f8 290 Pfam PF00512 His Kinase A (phospho-acceptor) domain 57 124 2.3E-15 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS15295 09fd5b2c63b6212ff29d57510de272f8 290 SMART SM00388 56 124 1.1E-18 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS15295 09fd5b2c63b6212ff29d57510de272f8 290 PRINTS PR00344 Bacterial sensor protein C-terminal signature 207 221 1.3E-16 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS15295 09fd5b2c63b6212ff29d57510de272f8 290 PRINTS PR00344 Bacterial sensor protein C-terminal signature 242 260 1.3E-16 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS15295 09fd5b2c63b6212ff29d57510de272f8 290 PRINTS PR00344 Bacterial sensor protein C-terminal signature 266 279 1.3E-16 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS15295 09fd5b2c63b6212ff29d57510de272f8 290 PRINTS PR00344 Bacterial sensor protein C-terminal signature 225 235 1.3E-16 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS15295 09fd5b2c63b6212ff29d57510de272f8 290 Gene3D G3DSA:3.30.565.10 125 286 9.6E-40 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS15295 09fd5b2c63b6212ff29d57510de272f8 290 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 171 280 1.4E-22 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS15295 09fd5b2c63b6212ff29d57510de272f8 290 PANTHER PTHR24423 15 30 1.6E-76 T 22-04-2016 PP4_RS15295 09fd5b2c63b6212ff29d57510de272f8 290 PANTHER PTHR24423 52 290 1.6E-76 T 22-04-2016 PP4_RS15295 09fd5b2c63b6212ff29d57510de272f8 290 SMART SM00387 170 282 3.1E-30 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS15295 09fd5b2c63b6212ff29d57510de272f8 290 SUPERFAMILY SSF47384 39 125 1.65E-19 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS15295 09fd5b2c63b6212ff29d57510de272f8 290 SUPERFAMILY SSF55874 113 282 5.5E-42 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS15295 09fd5b2c63b6212ff29d57510de272f8 290 Gene3D G3DSA:1.10.287.130 47 120 1.7E-14 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS27230 58523269ecbbd8c9f62e70e37bd36be0 223 Gene3D G3DSA:3.40.630.30 5 204 1.7E-52 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS27230 58523269ecbbd8c9f62e70e37bd36be0 223 Pfam PF13302 Acetyltransferase (GNAT) domain 35 163 1.0E-10 T 22-04-2016 IPR000182 GNAT domain GO:0008080 PP4_RS27230 58523269ecbbd8c9f62e70e37bd36be0 223 PANTHER PTHR13256:SF22 2 211 6.2E-71 T 22-04-2016 PP4_RS27230 58523269ecbbd8c9f62e70e37bd36be0 223 SUPERFAMILY SSF55729 18 188 6.54E-34 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS27230 58523269ecbbd8c9f62e70e37bd36be0 223 PANTHER PTHR13256 2 211 6.2E-71 T 22-04-2016 PP4_RS15045 b57c13110beac882b82232cb6229911d 437 SMART SM00922 200 296 2.8E-22 T 22-04-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal PP4_RS15045 b57c13110beac882b82232cb6229911d 437 Gene3D G3DSA:3.20.20.120 183 427 2.1E-88 T 22-04-2016 IPR029065 Enolase C-terminal domain-like PP4_RS15045 b57c13110beac882b82232cb6229911d 437 PANTHER PTHR13794 2 152 1.3E-190 T 22-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 PP4_RS15045 b57c13110beac882b82232cb6229911d 437 PANTHER PTHR13794 188 436 1.3E-190 T 22-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 PP4_RS15045 b57c13110beac882b82232cb6229911d 437 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 34 137 8.8E-11 T 22-04-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain PP4_RS15045 b57c13110beac882b82232cb6229911d 437 Gene3D G3DSA:3.30.390.10 2 179 7.1E-88 T 22-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 PP4_RS15045 b57c13110beac882b82232cb6229911d 437 Pfam PF13378 Enolase C-terminal domain-like 203 417 5.1E-58 T 22-04-2016 IPR029065 Enolase C-terminal domain-like PP4_RS15045 b57c13110beac882b82232cb6229911d 437 SUPERFAMILY SSF54826 3 140 9.6E-40 T 22-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 PP4_RS15045 b57c13110beac882b82232cb6229911d 437 PANTHER PTHR13794:SF58 2 152 1.3E-190 T 22-04-2016 PP4_RS15045 b57c13110beac882b82232cb6229911d 437 PANTHER PTHR13794:SF58 188 436 1.3E-190 T 22-04-2016 PP4_RS15045 b57c13110beac882b82232cb6229911d 437 SUPERFAMILY SSF51604 185 432 1.57E-67 T 22-04-2016 IPR029065 Enolase C-terminal domain-like PP4_RS07060 0d784d6608aef4db6096a77c8954e990 384 SMART SM00047 211 376 2.0E-36 T 22-04-2016 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 PP4_RS07060 0d784d6608aef4db6096a77c8954e990 384 PANTHER PTHR33308:SF3 215 372 8.9E-37 T 22-04-2016 PP4_RS07060 0d784d6608aef4db6096a77c8954e990 384 PANTHER PTHR33308 215 372 8.9E-37 T 22-04-2016 PP4_RS07060 0d784d6608aef4db6096a77c8954e990 384 Pfam PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase 232 370 1.3E-22 T 22-04-2016 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain GO:0004040 PP4_RS07060 0d784d6608aef4db6096a77c8954e990 384 TIGRFAM TIGR02541 flagell_FlgJ: flagellar rod assembly protein/muramidase FlgJ 17 370 7.1E-82 T 22-04-2016 IPR013377 Peptidoglycan hydrolase FlgJ GO:0016798|GO:0044780 KEGG: 00130+3.2.1.-|KEGG: 00531+3.2.1.- PP4_RS07060 0d784d6608aef4db6096a77c8954e990 384 Pfam PF10135 Rod binding protein 55 104 7.9E-14 T 22-04-2016 IPR019301 Flagellar protein FlgJ, N-terminal PP4_RS24240 c26aa949473585afaf8b18d02921797c 359 SUPERFAMILY SSF51604 116 358 2.1E-61 T 22-04-2016 IPR029065 Enolase C-terminal domain-like PP4_RS24240 c26aa949473585afaf8b18d02921797c 359 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 8 128 9.7E-36 T 22-04-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain PP4_RS24240 c26aa949473585afaf8b18d02921797c 359 SMART SM00922 145 242 8.1E-21 T 22-04-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal PP4_RS24240 c26aa949473585afaf8b18d02921797c 359 PANTHER PTHR13794:SF58 3 357 3.8E-74 T 22-04-2016 PP4_RS24240 c26aa949473585afaf8b18d02921797c 359 SUPERFAMILY SSF54826 4 130 2.02E-27 T 22-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 PP4_RS24240 c26aa949473585afaf8b18d02921797c 359 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 192 223 - T 22-04-2016 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 PP4_RS24240 c26aa949473585afaf8b18d02921797c 359 PANTHER PTHR13794 3 357 3.8E-74 T 22-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 PP4_RS24240 c26aa949473585afaf8b18d02921797c 359 Gene3D G3DSA:3.30.390.10 2 125 2.3E-38 T 22-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 PP4_RS24240 c26aa949473585afaf8b18d02921797c 359 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 103 128 - T 22-04-2016 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 PP4_RS24240 c26aa949473585afaf8b18d02921797c 359 Gene3D G3DSA:3.20.20.120 126 347 6.7E-59 T 22-04-2016 IPR029065 Enolase C-terminal domain-like PP4_RS24240 c26aa949473585afaf8b18d02921797c 359 Pfam PF13378 Enolase C-terminal domain-like 154 350 9.6E-51 T 22-04-2016 IPR029065 Enolase C-terminal domain-like PP4_RS19035 294ca40e3bea5723e50ce57fd8434103 245 Pfam PF00392 Bacterial regulatory proteins, gntR family 6 68 8.2E-18 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS19035 294ca40e3bea5723e50ce57fd8434103 245 Pfam PF07702 UTRA domain 107 232 9.6E-14 T 22-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 PP4_RS19035 294ca40e3bea5723e50ce57fd8434103 245 Gene3D G3DSA:1.10.10.10 3 72 6.6E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS19035 294ca40e3bea5723e50ce57fd8434103 245 SMART SM00345 9 68 1.8E-16 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS19035 294ca40e3bea5723e50ce57fd8434103 245 SMART SM00866 84 233 9.0E-6 T 22-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 PP4_RS19035 294ca40e3bea5723e50ce57fd8434103 245 SUPERFAMILY SSF64288 56 241 1.22E-24 T 22-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain PP4_RS19035 294ca40e3bea5723e50ce57fd8434103 245 PANTHER PTHR11751 9 75 3.6E-20 T 22-04-2016 PP4_RS19035 294ca40e3bea5723e50ce57fd8434103 245 PANTHER PTHR11751 95 115 3.6E-20 T 22-04-2016 PP4_RS19035 294ca40e3bea5723e50ce57fd8434103 245 Gene3D G3DSA:3.40.1410.10 87 236 1.9E-25 T 22-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain PP4_RS19035 294ca40e3bea5723e50ce57fd8434103 245 SUPERFAMILY SSF46785 3 72 5.07E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS19035 294ca40e3bea5723e50ce57fd8434103 245 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 28 42 5.1E-8 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS19035 294ca40e3bea5723e50ce57fd8434103 245 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 58 5.1E-8 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS25495 3298fdd66161cbcfd2e0f47003dc8b80 121 PANTHER PTHR26402 2 119 7.9E-37 T 22-04-2016 PP4_RS25495 3298fdd66161cbcfd2e0f47003dc8b80 121 Pfam PF00072 Response regulator receiver domain 4 115 6.2E-26 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS25495 3298fdd66161cbcfd2e0f47003dc8b80 121 Gene3D G3DSA:3.40.50.2300 1 119 3.0E-36 T 22-04-2016 PP4_RS25495 3298fdd66161cbcfd2e0f47003dc8b80 121 SUPERFAMILY SSF52172 1 119 1.17E-35 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS25495 3298fdd66161cbcfd2e0f47003dc8b80 121 SMART SM00448 2 115 1.3E-35 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS14315 73357a6a81a8fc69b59acb403ff34fde 808 Pfam PF00593 TonB dependent receptor 574 807 6.0E-27 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS14315 73357a6a81a8fc69b59acb403ff34fde 808 Pfam PF07715 TonB-dependent Receptor Plug Domain 157 258 7.4E-15 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS14315 73357a6a81a8fc69b59acb403ff34fde 808 PANTHER PTHR32552:SF37 149 808 3.4E-207 T 22-04-2016 PP4_RS14315 73357a6a81a8fc69b59acb403ff34fde 808 PANTHER PTHR32552:SF37 27 52 3.4E-207 T 22-04-2016 PP4_RS14315 73357a6a81a8fc69b59acb403ff34fde 808 Gene3D G3DSA:2.170.130.10 136 267 1.9E-33 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS14315 73357a6a81a8fc69b59acb403ff34fde 808 Pfam PF07660 Secretin and TonB N terminus short domain 65 113 1.0E-8 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS14315 73357a6a81a8fc69b59acb403ff34fde 808 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 159 808 1.2E-97 T 22-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 PP4_RS14315 73357a6a81a8fc69b59acb403ff34fde 808 SUPERFAMILY SSF56935 149 808 1.05E-118 T 22-04-2016 PP4_RS14315 73357a6a81a8fc69b59acb403ff34fde 808 Gene3D G3DSA:2.40.170.20 276 808 1.3E-122 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS14315 73357a6a81a8fc69b59acb403ff34fde 808 SMART SM00965 63 114 5.0E-13 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS14315 73357a6a81a8fc69b59acb403ff34fde 808 PANTHER PTHR32552 149 808 3.4E-207 T 22-04-2016 PP4_RS14315 73357a6a81a8fc69b59acb403ff34fde 808 PANTHER PTHR32552 27 52 3.4E-207 T 22-04-2016 PP4_RS14315 73357a6a81a8fc69b59acb403ff34fde 808 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 791 808 - T 22-04-2016 IPR010917 TonB-dependent receptor, conserved site PP4_RS21875 04176fbf4ff8088046ab5360a0e1e753 421 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1 418 2.1E-179 T 22-04-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PP4_RS21875 04176fbf4ff8088046ab5360a0e1e753 421 Gene3D G3DSA:3.65.10.10 223 418 1.0E-58 T 22-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 PP4_RS21875 04176fbf4ff8088046ab5360a0e1e753 421 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 1 419 47.853 T 22-04-2016 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PP4_RS21875 04176fbf4ff8088046ab5360a0e1e753 421 PANTHER PTHR21090 1 421 6.7E-203 T 22-04-2016 PP4_RS21875 04176fbf4ff8088046ab5360a0e1e753 421 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 7 409 8.2E-122 T 22-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 PP4_RS21875 04176fbf4ff8088046ab5360a0e1e753 421 SUPERFAMILY SSF55205 1 419 3.11E-141 T 22-04-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 PP4_RS21875 04176fbf4ff8088046ab5360a0e1e753 421 Gene3D G3DSA:3.65.10.10 21 222 1.0E-65 T 22-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 PP4_RS13700 13013f86402abf77c47d286ad32456ac 329 PANTHER PTHR13078 10 79 2.2E-35 T 22-04-2016 PP4_RS13700 13013f86402abf77c47d286ad32456ac 329 Pfam PF13452 N-terminal half of MaoC dehydratase 13 152 1.1E-12 T 22-04-2016 PP4_RS13700 13013f86402abf77c47d286ad32456ac 329 PANTHER PTHR13078:SF52 101 317 2.2E-35 T 22-04-2016 PP4_RS13700 13013f86402abf77c47d286ad32456ac 329 Gene3D G3DSA:3.10.129.10 14 164 5.1E-12 T 22-04-2016 IPR029069 HotDog domain PP4_RS13700 13013f86402abf77c47d286ad32456ac 329 Pfam PF01796 DUF35 OB-fold domain, acyl-CoA-associated 251 313 7.9E-20 T 22-04-2016 IPR002878 Domain of unknown function DUF35, OB-fold, C-terminal PP4_RS13700 13013f86402abf77c47d286ad32456ac 329 SUPERFAMILY SSF54637 23 178 7.82E-12 T 22-04-2016 IPR029069 HotDog domain PP4_RS13700 13013f86402abf77c47d286ad32456ac 329 Pfam PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) 213 247 5.3E-10 T 22-04-2016 IPR022002 Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal PP4_RS13700 13013f86402abf77c47d286ad32456ac 329 PANTHER PTHR13078 101 317 2.2E-35 T 22-04-2016 PP4_RS13700 13013f86402abf77c47d286ad32456ac 329 PANTHER PTHR13078:SF52 10 79 2.2E-35 T 22-04-2016 PP4_RS13700 13013f86402abf77c47d286ad32456ac 329 SUPERFAMILY SSF50249 200 321 4.11E-33 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS16705 c5e88f9bd9b10eb3418a527740ab4651 395 PANTHER PTHR30011:SF1 1 375 1.1E-71 T 22-04-2016 PP4_RS16705 c5e88f9bd9b10eb3418a527740ab4651 395 Gene3D G3DSA:3.20.20.30 8 267 3.0E-66 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS16705 c5e88f9bd9b10eb3418a527740ab4651 395 Gene3D G3DSA:3.20.20.30 311 372 3.0E-66 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS16705 c5e88f9bd9b10eb3418a527740ab4651 395 SUPERFAMILY SSF51679 7 372 3.66E-59 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS16705 c5e88f9bd9b10eb3418a527740ab4651 395 PANTHER PTHR30011 1 375 1.1E-71 T 22-04-2016 PP4_RS16705 c5e88f9bd9b10eb3418a527740ab4651 395 Pfam PF00296 Luciferase-like monooxygenase 21 347 3.5E-49 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS13655 8d071855dfd24d77e2af1c4b1f8bbcf1 709 Gene3D G3DSA:3.20.20.70 2 399 2.6E-114 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS13655 8d071855dfd24d77e2af1c4b1f8bbcf1 709 SUPERFAMILY SSF51395 2 399 2.82E-100 T 22-04-2016 PP4_RS13655 8d071855dfd24d77e2af1c4b1f8bbcf1 709 Gene3D G3DSA:3.50.50.60 565 676 3.4E-22 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS13655 8d071855dfd24d77e2af1c4b1f8bbcf1 709 Gene3D G3DSA:3.40.50.720 405 532 2.2E-32 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS13655 8d071855dfd24d77e2af1c4b1f8bbcf1 709 PANTHER PTHR22893 153 450 6.2E-115 T 22-04-2016 PP4_RS13655 8d071855dfd24d77e2af1c4b1f8bbcf1 709 PANTHER PTHR22893 7 132 6.2E-115 T 22-04-2016 PP4_RS13655 8d071855dfd24d77e2af1c4b1f8bbcf1 709 SUPERFAMILY SSF51905 566 708 5.18E-38 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS13655 8d071855dfd24d77e2af1c4b1f8bbcf1 709 SUPERFAMILY SSF51905 369 521 5.18E-38 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS13655 8d071855dfd24d77e2af1c4b1f8bbcf1 709 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 7 361 2.2E-65 T 22-04-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 PP4_RS13655 8d071855dfd24d77e2af1c4b1f8bbcf1 709 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 573 591 1.8E-13 T 22-04-2016 PP4_RS13655 8d071855dfd24d77e2af1c4b1f8bbcf1 709 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 657 673 1.8E-13 T 22-04-2016 PP4_RS13655 8d071855dfd24d77e2af1c4b1f8bbcf1 709 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 410 429 1.8E-13 T 22-04-2016 PP4_RS13655 8d071855dfd24d77e2af1c4b1f8bbcf1 709 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 409 685 1.5E-28 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS13655 8d071855dfd24d77e2af1c4b1f8bbcf1 709 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 409 431 2.3E-16 T 22-04-2016 PP4_RS13655 8d071855dfd24d77e2af1c4b1f8bbcf1 709 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 573 598 2.3E-16 T 22-04-2016 PP4_RS13655 8d071855dfd24d77e2af1c4b1f8bbcf1 709 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 658 672 2.3E-16 T 22-04-2016 PP4_RS01035 b02dc8a029e7c0cd8a682ad08dfab032 145 SUPERFAMILY SSF54631 5 143 1.77E-35 T 22-04-2016 PP4_RS01035 b02dc8a029e7c0cd8a682ad08dfab032 145 Pfam PF00571 CBS domain 74 125 2.4E-11 T 22-04-2016 IPR000644 CBS domain PP4_RS01035 b02dc8a029e7c0cd8a682ad08dfab032 145 Pfam PF00571 CBS domain 17 63 1.4E-11 T 22-04-2016 IPR000644 CBS domain PP4_RS01035 b02dc8a029e7c0cd8a682ad08dfab032 145 PANTHER PTHR11911 17 145 1.7E-36 T 22-04-2016 PP4_RS01035 b02dc8a029e7c0cd8a682ad08dfab032 145 SMART SM00116 16 63 3.1E-8 T 22-04-2016 IPR000644 CBS domain PP4_RS01035 b02dc8a029e7c0cd8a682ad08dfab032 145 SMART SM00116 81 128 1.8E-8 T 22-04-2016 IPR000644 CBS domain PP4_RS01035 b02dc8a029e7c0cd8a682ad08dfab032 145 Gene3D G3DSA:3.10.580.10 15 127 6.8E-35 T 22-04-2016 PP4_RS14675 26a8f1ced1c8a879eb95a4562602b6ca 231 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 72 1.2E-13 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS14675 26a8f1ced1c8a879eb95a4562602b6ca 231 PANTHER PTHR11751 15 98 3.3E-20 T 22-04-2016 PP4_RS14675 26a8f1ced1c8a879eb95a4562602b6ca 231 Gene3D G3DSA:1.10.10.10 15 74 1.2E-14 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS14675 26a8f1ced1c8a879eb95a4562602b6ca 231 SMART SM00895 82 214 3.7E-16 T 22-04-2016 IPR011711 GntR, C-terminal PP4_RS14675 26a8f1ced1c8a879eb95a4562602b6ca 231 SMART SM00345 14 72 3.2E-15 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS14675 26a8f1ced1c8a879eb95a4562602b6ca 231 Pfam PF07729 FCD domain 82 213 8.8E-22 T 22-04-2016 IPR011711 GntR, C-terminal PP4_RS14675 26a8f1ced1c8a879eb95a4562602b6ca 231 SUPERFAMILY SSF46785 15 76 5.17E-13 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS14675 26a8f1ced1c8a879eb95a4562602b6ca 231 Gene3D G3DSA:1.20.120.530 75 223 1.8E-27 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PP4_RS14675 26a8f1ced1c8a879eb95a4562602b6ca 231 SUPERFAMILY SSF48008 78 215 1.15E-19 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PP4_RS25390 6d105bc97c6d6dc3599e9b442db31006 128 Pfam PF01124 MAPEG family 3 127 8.5E-21 T 22-04-2016 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein PP4_RS25390 6d105bc97c6d6dc3599e9b442db31006 128 PANTHER PTHR35371:SF1 1 128 4.7E-27 T 22-04-2016 PP4_RS25390 6d105bc97c6d6dc3599e9b442db31006 128 SUPERFAMILY SSF161084 3 128 6.67E-25 T 22-04-2016 PP4_RS25390 6d105bc97c6d6dc3599e9b442db31006 128 Gene3D G3DSA:1.20.120.550 3 125 7.5E-15 T 22-04-2016 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain PP4_RS25390 6d105bc97c6d6dc3599e9b442db31006 128 PANTHER PTHR35371 1 128 4.7E-27 T 22-04-2016 PP4_RS23615 8e4d30cc830259271895da5288728056 289 Pfam PF09995 Uncharacterized protein conserved in bacteria (DUF2236) 42 272 7.5E-54 T 22-04-2016 IPR018713 Domain of unknown function DUF2236 PP4_RS23615 8e4d30cc830259271895da5288728056 289 PANTHER PTHR36151 1 288 2.0E-94 T 22-04-2016 PP4_RS23615 8e4d30cc830259271895da5288728056 289 PANTHER PTHR36151:SF3 1 288 2.0E-94 T 22-04-2016 PP4_RS24475 bb19ae460bcfe0493cf848658385a999 332 Gene3D G3DSA:3.40.50.300 112 315 1.4E-88 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS24475 bb19ae460bcfe0493cf848658385a999 332 PANTHER PTHR30473 2 328 6.7E-177 T 22-04-2016 PP4_RS24475 bb19ae460bcfe0493cf848658385a999 332 PANTHER PTHR30473:SF1 2 328 6.7E-177 T 22-04-2016 PP4_RS24475 bb19ae460bcfe0493cf848658385a999 332 SUPERFAMILY SSF52540 112 293 3.11E-39 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS24475 bb19ae460bcfe0493cf848658385a999 332 Pfam PF02562 PhoH-like protein 113 316 2.3E-94 T 22-04-2016 IPR003714 PhoH-like protein GO:0005524 PP4_RS07615 60b2e8a6d27261174f1524a4f7834cdb 1162 Gene3D G3DSA:3.40.50.300 1 187 6.8E-69 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS07615 60b2e8a6d27261174f1524a4f7834cdb 1162 Gene3D G3DSA:3.40.50.300 1046 1158 6.8E-69 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS07615 60b2e8a6d27261174f1524a4f7834cdb 1162 Gene3D G3DSA:3.40.50.300 452 475 6.8E-69 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS07615 60b2e8a6d27261174f1524a4f7834cdb 1162 Pfam PF06470 SMC proteins Flexible Hinge Domain 524 559 4.0E-6 T 22-04-2016 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 PP4_RS07615 60b2e8a6d27261174f1524a4f7834cdb 1162 PANTHER PTHR18937:SF261 1 1161 0.0 T 22-04-2016 PP4_RS07615 60b2e8a6d27261174f1524a4f7834cdb 1162 Hamap MF_01894 Chromosome partition protein Smc [smc]. 1 1155 23.34 T 22-04-2016 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 PP4_RS07615 60b2e8a6d27261174f1524a4f7834cdb 1162 SUPERFAMILY SSF52540 1 217 3.69E-51 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS07615 60b2e8a6d27261174f1524a4f7834cdb 1162 SUPERFAMILY SSF52540 1052 1138 3.69E-51 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS07615 60b2e8a6d27261174f1524a4f7834cdb 1162 SUPERFAMILY SSF75553 472 661 6.67E-7 T 22-04-2016 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 PP4_RS07615 60b2e8a6d27261174f1524a4f7834cdb 1162 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 1146 1.6E-67 T 22-04-2016 IPR003395 RecF/RecN/SMC, N-terminal PP4_RS07615 60b2e8a6d27261174f1524a4f7834cdb 1162 TIGRFAM TIGR02168 SMC_prok_B: chromosome segregation protein SMC 2 1153 0.0 T 22-04-2016 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 PP4_RS07615 60b2e8a6d27261174f1524a4f7834cdb 1162 PANTHER PTHR18937 1 1161 0.0 T 22-04-2016 PP4_RS07615 60b2e8a6d27261174f1524a4f7834cdb 1162 SMART SM00968 520 615 7.1E-9 T 22-04-2016 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 PP4_RS13785 31874a445116af586028f7509ceaa876 318 PANTHER PTHR10909 113 314 9.5E-130 T 22-04-2016 PP4_RS13785 31874a445116af586028f7509ceaa876 318 PANTHER PTHR10909:SF294 113 314 9.5E-130 T 22-04-2016 PP4_RS13785 31874a445116af586028f7509ceaa876 318 PIRSF PIRSF000089 1 317 2.5E-102 T 22-04-2016 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 PP4_RS13785 31874a445116af586028f7509ceaa876 318 SUPERFAMILY SSF52402 3 195 6.56E-54 T 22-04-2016 PP4_RS13785 31874a445116af586028f7509ceaa876 318 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 262 288 - T 22-04-2016 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site PP4_RS13785 31874a445116af586028f7509ceaa876 318 Gene3D G3DSA:3.40.50.1220 193 316 1.1E-61 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain PP4_RS13785 31874a445116af586028f7509ceaa876 318 SUPERFAMILY SSF52467 196 316 1.31E-48 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain PP4_RS13785 31874a445116af586028f7509ceaa876 318 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 199 281 1.4E-36 T 22-04-2016 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal PP4_RS13785 31874a445116af586028f7509ceaa876 318 SMART SM00893 3 191 5.6E-46 T 22-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 PP4_RS13785 31874a445116af586028f7509ceaa876 318 Gene3D G3DSA:3.40.50.620 1 191 1.4E-60 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS13785 31874a445116af586028f7509ceaa876 318 Pfam PF01012 Electron transfer flavoprotein domain 15 179 7.7E-39 T 22-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 PP4_RS21920 00b73d82aee163d71db2196163930c00 190 PANTHER PTHR37481:SF1 4 190 1.1E-50 T 22-04-2016 PP4_RS21920 00b73d82aee163d71db2196163930c00 190 Pfam PF06835 Lipopolysaccharide-assembly, LptC-related 13 188 2.2E-56 T 22-04-2016 IPR010664 Lipopolysaccharide assembly, LptC-related PP4_RS21920 00b73d82aee163d71db2196163930c00 190 TIGRFAM TIGR04409 LptC_YrbK: LPS export ABC transporter periplasmic protein LptC 10 187 1.6E-52 T 22-04-2016 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 PP4_RS21920 00b73d82aee163d71db2196163930c00 190 Hamap MF_01915 Lipopolysaccharide export system protein LptC [lptC]. 6 190 25.88 T 22-04-2016 IPR026265 Lipopolysaccharide export system protein LptC GO:0005887|GO:0015221|GO:0015920 PP4_RS21920 00b73d82aee163d71db2196163930c00 190 Gene3D G3DSA:2.60.450.10 59 181 1.2E-5 T 22-04-2016 PP4_RS21920 00b73d82aee163d71db2196163930c00 190 PANTHER PTHR37481 4 190 1.1E-50 T 22-04-2016 PP4_RS16045 52157f0b3068cc92b84ef7e57fe21d12 419 SUPERFAMILY SSF103473 3 415 3.92E-79 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS16045 52157f0b3068cc92b84ef7e57fe21d12 419 PANTHER PTHR11662:SF277 5 410 9.1E-108 T 22-04-2016 PP4_RS16045 52157f0b3068cc92b84ef7e57fe21d12 419 PIRSF PIRSF002808 2 410 4.7E-34 T 22-04-2016 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 PP4_RS16045 52157f0b3068cc92b84ef7e57fe21d12 419 Pfam PF07690 Major Facilitator Superfamily 7 376 2.6E-55 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS16045 52157f0b3068cc92b84ef7e57fe21d12 419 Gene3D G3DSA:1.20.1250.20 218 414 8.6E-26 T 22-04-2016 PP4_RS16045 52157f0b3068cc92b84ef7e57fe21d12 419 PANTHER PTHR11662 5 410 9.1E-108 T 22-04-2016 PP4_RS16045 52157f0b3068cc92b84ef7e57fe21d12 419 Gene3D G3DSA:1.20.1250.20 3 192 4.0E-46 T 22-04-2016 PP4_RS02165 7a8705e5686d8cde0ee354683e2bfa6e 368 Hamap MF_01262 CCA-adding enzyme [cca]. 1 363 40.238 T 22-04-2016 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 PP4_RS02165 7a8705e5686d8cde0ee354683e2bfa6e 368 Gene3D G3DSA:1.10.3090.10 122 316 1.5E-37 T 22-04-2016 PP4_RS02165 7a8705e5686d8cde0ee354683e2bfa6e 368 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 149 210 1.9E-11 T 22-04-2016 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain PP4_RS02165 7a8705e5686d8cde0ee354683e2bfa6e 368 SUPERFAMILY SSF81301 2 119 9.7E-29 T 22-04-2016 PP4_RS02165 7a8705e5686d8cde0ee354683e2bfa6e 368 SUPERFAMILY SSF81891 120 363 3.53E-44 T 22-04-2016 PP4_RS02165 7a8705e5686d8cde0ee354683e2bfa6e 368 Pfam PF01743 Poly A polymerase head domain 4 122 3.4E-16 T 22-04-2016 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 PP4_RS02165 7a8705e5686d8cde0ee354683e2bfa6e 368 PANTHER PTHR13734 1 210 1.5E-65 T 22-04-2016 PP4_RS02165 7a8705e5686d8cde0ee354683e2bfa6e 368 PIRSF PIRSF000813 1 368 1.0E-145 T 22-04-2016 IPR012006 tRNA nucleotidyltransferase, proteobacteria GO:0001680|GO:0003723|GO:0004810|GO:0005524 PP4_RS02165 7a8705e5686d8cde0ee354683e2bfa6e 368 Gene3D G3DSA:3.30.460.10 2 121 2.7E-29 T 22-04-2016 PP4_RS01490 efc1f15cd3f8cc25e5b12b009595a155 455 Pfam PF00512 His Kinase A (phospho-acceptor) domain 255 308 1.3E-8 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS01490 efc1f15cd3f8cc25e5b12b009595a155 455 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 351 454 6.4E-17 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS01490 efc1f15cd3f8cc25e5b12b009595a155 455 SMART SM00304 200 252 2.0E-8 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS01490 efc1f15cd3f8cc25e5b12b009595a155 455 SUPERFAMILY SSF47384 237 309 3.73E-14 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS01490 efc1f15cd3f8cc25e5b12b009595a155 455 PANTHER PTHR24423 4 18 1.8E-51 T 22-04-2016 PP4_RS01490 efc1f15cd3f8cc25e5b12b009595a155 455 PANTHER PTHR24423 194 454 1.8E-51 T 22-04-2016 PP4_RS01490 efc1f15cd3f8cc25e5b12b009595a155 455 SMART SM00388 253 311 1.1E-11 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS01490 efc1f15cd3f8cc25e5b12b009595a155 455 SMART SM00387 348 455 1.7E-24 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS01490 efc1f15cd3f8cc25e5b12b009595a155 455 PRINTS PR00344 Bacterial sensor protein C-terminal signature 441 454 1.0E-10 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS01490 efc1f15cd3f8cc25e5b12b009595a155 455 PRINTS PR00344 Bacterial sensor protein C-terminal signature 382 396 1.0E-10 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS01490 efc1f15cd3f8cc25e5b12b009595a155 455 PRINTS PR00344 Bacterial sensor protein C-terminal signature 417 435 1.0E-10 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS01490 efc1f15cd3f8cc25e5b12b009595a155 455 Pfam PF00672 HAMP domain 182 248 7.4E-13 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS01490 efc1f15cd3f8cc25e5b12b009595a155 455 Gene3D G3DSA:3.30.565.10 297 454 1.5E-29 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS01490 efc1f15cd3f8cc25e5b12b009595a155 455 SUPERFAMILY SSF55874 303 454 6.02E-30 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS01490 efc1f15cd3f8cc25e5b12b009595a155 455 Gene3D G3DSA:1.10.287.130 243 296 1.3E-14 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS20835 04fd8db0c32f049ccefb3451df515688 236 PANTHER PTHR21392:SF1 1 222 3.0E-109 T 22-04-2016 PP4_RS20835 04fd8db0c32f049ccefb3451df515688 236 Pfam PF03942 DTW domain 28 209 1.9E-43 T 22-04-2016 IPR005636 DTW PP4_RS20835 04fd8db0c32f049ccefb3451df515688 236 SMART SM01144 26 218 4.5E-76 T 22-04-2016 IPR005636 DTW PP4_RS20835 04fd8db0c32f049ccefb3451df515688 236 PANTHER PTHR21392 1 222 3.0E-109 T 22-04-2016 PP4_RS18365 0b34b574f9e19003850548dadcb3294a 184 Pfam PF06476 Protein of unknown function (DUF1090) 73 177 1.9E-17 T 22-04-2016 IPR009468 Protein of unknown function DUF1090 PP4_RS25465 af28c9059a790e071eea318552318f31 239 SUPERFAMILY SSF88697 3 65 5.96E-15 T 22-04-2016 IPR015947 PUA-like domain PP4_RS25465 af28c9059a790e071eea318552318f31 239 PANTHER PTHR30027:SF3 1 239 3.4E-91 T 22-04-2016 PP4_RS25465 af28c9059a790e071eea318552318f31 239 Gene3D G3DSA:3.40.1280.10 75 238 7.7E-62 T 22-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PP4_RS25465 af28c9059a790e071eea318552318f31 239 Gene3D G3DSA:2.40.240.20 1 66 8.0E-24 T 22-04-2016 PP4_RS25465 af28c9059a790e071eea318552318f31 239 Pfam PF04452 RNA methyltransferase 19 233 1.2E-72 T 22-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PP4_RS25465 af28c9059a790e071eea318552318f31 239 PANTHER PTHR30027 1 239 3.4E-91 T 22-04-2016 PP4_RS25465 af28c9059a790e071eea318552318f31 239 SUPERFAMILY SSF75217 75 239 4.8E-53 T 22-04-2016 IPR029028 Alpha/beta knot methyltransferases PP4_RS25465 af28c9059a790e071eea318552318f31 239 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 19 237 5.4E-64 T 22-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PP4_RS25465 af28c9059a790e071eea318552318f31 239 PIRSF PIRSF015601 3 238 5.7E-60 T 22-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PP4_RS17665 ea5d255799de1d662178823c17466d0b 213 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 19 206 4.3E-107 T 22-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 PP4_RS17665 ea5d255799de1d662178823c17466d0b 213 PANTHER PTHR10381 3 210 1.0E-137 T 22-04-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA PP4_RS17665 ea5d255799de1d662178823c17466d0b 213 SUPERFAMILY SSF52096 27 209 5.88E-73 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS17665 ea5d255799de1d662178823c17466d0b 213 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 19 209 43.333 T 22-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 PP4_RS17665 ea5d255799de1d662178823c17466d0b 213 PRINTS PR00127 Clp protease catalytic subunit P signature 35 50 1.4E-52 T 22-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 PP4_RS17665 ea5d255799de1d662178823c17466d0b 213 PRINTS PR00127 Clp protease catalytic subunit P signature 75 95 1.4E-52 T 22-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 PP4_RS17665 ea5d255799de1d662178823c17466d0b 213 PRINTS PR00127 Clp protease catalytic subunit P signature 127 146 1.4E-52 T 22-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 PP4_RS17665 ea5d255799de1d662178823c17466d0b 213 PRINTS PR00127 Clp protease catalytic subunit P signature 106 123 1.4E-52 T 22-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 PP4_RS17665 ea5d255799de1d662178823c17466d0b 213 PRINTS PR00127 Clp protease catalytic subunit P signature 184 203 1.4E-52 T 22-04-2016 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 PP4_RS17665 ea5d255799de1d662178823c17466d0b 213 Pfam PF00574 Clp protease 29 208 4.5E-87 T 22-04-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA PP4_RS17665 ea5d255799de1d662178823c17466d0b 213 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 106 117 - T 22-04-2016 IPR018215 ClpP, Ser active site PP4_RS17665 ea5d255799de1d662178823c17466d0b 213 PANTHER PTHR10381:SF22 3 210 1.0E-137 T 22-04-2016 PP4_RS17665 ea5d255799de1d662178823c17466d0b 213 Gene3D G3DSA:3.90.226.10 19 209 1.4E-90 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS17665 ea5d255799de1d662178823c17466d0b 213 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 128 141 - T 22-04-2016 IPR033135 ClpP, histidine active site PP4_RS13770 1aea2f74e5dea81b31de046a82f9b57d 343 SUPERFAMILY SSF51569 5 278 5.68E-63 T 22-04-2016 PP4_RS13770 1aea2f74e5dea81b31de046a82f9b57d 343 PANTHER PTHR10277 5 265 9.6E-101 T 22-04-2016 PP4_RS13770 1aea2f74e5dea81b31de046a82f9b57d 343 Pfam PF00682 HMGL-like 9 264 5.9E-55 T 22-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 PP4_RS13770 1aea2f74e5dea81b31de046a82f9b57d 343 TIGRFAM TIGR03217 4OH_2_O_val_ald: 4-hydroxy-2-oxovalerate aldolase 6 339 7.4E-168 T 22-04-2016 IPR017629 4-hydroxy-2-oxovalerate aldolase GO:0008701|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 PP4_RS13770 1aea2f74e5dea81b31de046a82f9b57d 343 PANTHER PTHR10277:SF3 5 265 9.6E-101 T 22-04-2016 IPR017629 4-hydroxy-2-oxovalerate aldolase GO:0008701|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 PP4_RS13770 1aea2f74e5dea81b31de046a82f9b57d 343 Gene3D G3DSA:3.20.20.70 6 263 5.6E-51 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS13770 1aea2f74e5dea81b31de046a82f9b57d 343 Pfam PF07836 DmpG-like communication domain 276 337 1.7E-29 T 22-04-2016 IPR012425 DmpG-like communication GO:0016833|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 PP4_RS13770 1aea2f74e5dea81b31de046a82f9b57d 343 Gene3D G3DSA:1.10.8.60 278 340 1.0E-32 T 22-04-2016 PP4_RS13770 1aea2f74e5dea81b31de046a82f9b57d 343 Hamap MF_01656 4-hydroxy-2-oxovalerate aldolase [mhpE]. 1 343 209.996 T 22-04-2016 IPR017629 4-hydroxy-2-oxovalerate aldolase GO:0008701|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 PP4_RS13770 1aea2f74e5dea81b31de046a82f9b57d 343 ProDom PD005364 ALDOLASE 4-HYDROXY-2-OXOVALERATE LYASE PYRUVATE 4.1.3.- PLASMID HMG-COA LYASE-LIKE TRANSFERASE HOA 274 336 3.0E-27 T 22-04-2016 IPR012425 DmpG-like communication GO:0016833|GO:0019439 KEGG: 00360+4.1.3.39|KEGG: 00362+4.1.3.39|KEGG: 00621+4.1.3.39|KEGG: 00622+4.1.3.39|MetaCyc: PWY-5162 PP4_RS13770 1aea2f74e5dea81b31de046a82f9b57d 343 SUPERFAMILY SSF89000 290 339 7.06E-16 T 22-04-2016 PP4_RS26870 38ca625f6f41c8338a4bd2b35b7897d6 357 Pfam PF00842 Alanine racemase, C-terminal domain 232 354 1.6E-38 T 22-04-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PP4_RS26870 38ca625f6f41c8338a4bd2b35b7897d6 357 SUPERFAMILY SSF51419 8 233 3.34E-73 T 22-04-2016 IPR029066 PLP-binding barrel PP4_RS26870 38ca625f6f41c8338a4bd2b35b7897d6 357 PANTHER PTHR30511:SF0 1 357 2.3E-157 T 22-04-2016 PP4_RS26870 38ca625f6f41c8338a4bd2b35b7897d6 357 TIGRFAM TIGR00492 alr: alanine racemase 3 355 7.7E-114 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PP4_RS26870 38ca625f6f41c8338a4bd2b35b7897d6 357 PRINTS PR00992 Alanine racemase signature 265 280 7.5E-64 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PP4_RS26870 38ca625f6f41c8338a4bd2b35b7897d6 357 PRINTS PR00992 Alanine racemase signature 286 303 7.5E-64 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PP4_RS26870 38ca625f6f41c8338a4bd2b35b7897d6 357 PRINTS PR00992 Alanine racemase signature 120 132 7.5E-64 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PP4_RS26870 38ca625f6f41c8338a4bd2b35b7897d6 357 PRINTS PR00992 Alanine racemase signature 154 165 7.5E-64 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PP4_RS26870 38ca625f6f41c8338a4bd2b35b7897d6 357 PRINTS PR00992 Alanine racemase signature 25 41 7.5E-64 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PP4_RS26870 38ca625f6f41c8338a4bd2b35b7897d6 357 PRINTS PR00992 Alanine racemase signature 338 351 7.5E-64 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PP4_RS26870 38ca625f6f41c8338a4bd2b35b7897d6 357 PRINTS PR00992 Alanine racemase signature 248 263 7.5E-64 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PP4_RS26870 38ca625f6f41c8338a4bd2b35b7897d6 357 PRINTS PR00992 Alanine racemase signature 60 78 7.5E-64 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PP4_RS26870 38ca625f6f41c8338a4bd2b35b7897d6 357 PRINTS PR00992 Alanine racemase signature 191 218 7.5E-64 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PP4_RS26870 38ca625f6f41c8338a4bd2b35b7897d6 357 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 30 40 - T 22-04-2016 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PP4_RS26870 38ca625f6f41c8338a4bd2b35b7897d6 357 Hamap MF_01201 Alanine racemase. 1 355 35.91 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PP4_RS26870 38ca625f6f41c8338a4bd2b35b7897d6 357 Gene3D G3DSA:3.20.20.10 10 211 3.1E-73 T 22-04-2016 IPR029066 PLP-binding barrel PP4_RS26870 38ca625f6f41c8338a4bd2b35b7897d6 357 SUPERFAMILY SSF50621 228 356 2.86E-45 T 22-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 PP4_RS26870 38ca625f6f41c8338a4bd2b35b7897d6 357 Gene3D G3DSA:2.40.37.10 212 356 2.0E-56 T 22-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 PP4_RS26870 38ca625f6f41c8338a4bd2b35b7897d6 357 PANTHER PTHR30511 1 357 2.3E-157 T 22-04-2016 PP4_RS26870 38ca625f6f41c8338a4bd2b35b7897d6 357 Pfam PF01168 Alanine racemase, N-terminal domain 8 218 1.5E-72 T 22-04-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PP4_RS26870 38ca625f6f41c8338a4bd2b35b7897d6 357 SMART SM01005 232 355 8.8E-69 T 22-04-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PP4_RS19735 ada6c17b9183166290c1d12aabb89060 560 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 154 162 - T 22-04-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site PP4_RS19735 ada6c17b9183166290c1d12aabb89060 560 Pfam PF00271 Helicase conserved C-terminal domain 232 340 5.9E-28 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS19735 ada6c17b9183166290c1d12aabb89060 560 Hamap MF_00964 ATP-dependent RNA helicase DeaD [deaD]. 1 557 41.82 T 22-04-2016 IPR028618 ATP-dependent RNA helicase DeaD GO:0000027|GO:0004004|GO:0070417 PP4_RS19735 ada6c17b9183166290c1d12aabb89060 560 SMART SM00487 25 223 1.3E-59 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PP4_RS19735 ada6c17b9183166290c1d12aabb89060 560 Gene3D G3DSA:3.40.50.300 213 374 1.5E-50 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS19735 ada6c17b9183166290c1d12aabb89060 560 SUPERFAMILY SSF52540 74 361 1.38E-71 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS19735 ada6c17b9183166290c1d12aabb89060 560 SMART SM00490 259 340 5.9E-32 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS19735 ada6c17b9183166290c1d12aabb89060 560 Pfam PF00270 DEAD/DEAH box helicase 31 194 2.5E-49 T 22-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 PP4_RS19735 ada6c17b9183166290c1d12aabb89060 560 Gene3D G3DSA:3.40.50.300 3 212 1.0E-77 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS19735 ada6c17b9183166290c1d12aabb89060 560 PANTHER PTHR24031:SF261 513 560 2.4E-194 T 22-04-2016 PP4_RS19735 ada6c17b9183166290c1d12aabb89060 560 PANTHER PTHR24031:SF261 423 465 2.4E-194 T 22-04-2016 PP4_RS19735 ada6c17b9183166290c1d12aabb89060 560 PANTHER PTHR24031:SF261 8 381 2.4E-194 T 22-04-2016 PP4_RS19735 ada6c17b9183166290c1d12aabb89060 560 PANTHER PTHR24031 513 560 2.4E-194 T 22-04-2016 PP4_RS19735 ada6c17b9183166290c1d12aabb89060 560 PANTHER PTHR24031 423 465 2.4E-194 T 22-04-2016 PP4_RS19735 ada6c17b9183166290c1d12aabb89060 560 PANTHER PTHR24031 8 381 2.4E-194 T 22-04-2016 PP4_RS19735 ada6c17b9183166290c1d12aabb89060 560 Pfam PF03880 DbpA RNA binding domain 487 555 2.8E-18 T 22-04-2016 IPR005580 DbpA, RNA-binding domain PP4_RS13730 9d12718394819253b8af8a00d589a4e8 569 Gene3D G3DSA:3.50.50.60 506 567 2.6E-68 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS13730 9d12718394819253b8af8a00d589a4e8 569 Gene3D G3DSA:3.50.50.60 182 321 2.6E-68 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS13730 9d12718394819253b8af8a00d589a4e8 569 Gene3D G3DSA:3.50.50.60 9 110 2.6E-68 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS13730 9d12718394819253b8af8a00d589a4e8 569 Gene3D G3DSA:3.90.700.10 341 499 2.0E-31 T 22-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain PP4_RS13730 9d12718394819253b8af8a00d589a4e8 569 SUPERFAMILY SSF56425 322 500 8.79E-33 T 22-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain PP4_RS13730 9d12718394819253b8af8a00d589a4e8 569 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 526 541 1.8E-6 T 22-04-2016 PP4_RS13730 9d12718394819253b8af8a00d589a4e8 569 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 12 34 1.8E-6 T 22-04-2016 PP4_RS13730 9d12718394819253b8af8a00d589a4e8 569 SUPERFAMILY SSF51905 204 331 6.79E-42 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS13730 9d12718394819253b8af8a00d589a4e8 569 SUPERFAMILY SSF51905 509 567 6.79E-42 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS13730 9d12718394819253b8af8a00d589a4e8 569 SUPERFAMILY SSF51905 5 130 6.79E-42 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS13730 9d12718394819253b8af8a00d589a4e8 569 Pfam PF00890 FAD binding domain 12 551 4.8E-91 T 22-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain PP4_RS13730 9d12718394819253b8af8a00d589a4e8 569 PANTHER PTHR11632:SF59 209 568 1.4E-162 T 22-04-2016 PP4_RS13730 9d12718394819253b8af8a00d589a4e8 569 PANTHER PTHR11632:SF59 11 135 1.4E-162 T 22-04-2016 PP4_RS13730 9d12718394819253b8af8a00d589a4e8 569 PANTHER PTHR11632 209 568 1.4E-162 T 22-04-2016 PP4_RS13730 9d12718394819253b8af8a00d589a4e8 569 PANTHER PTHR11632 11 135 1.4E-162 T 22-04-2016 PP4_RS04850 b6d5515c7db55731b1a95df052d5c231 763 Pfam PF01915 Glycosyl hydrolase family 3 C-terminal domain 390 646 4.0E-59 T 22-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 PP4_RS04850 b6d5515c7db55731b1a95df052d5c231 763 SMART SM01217 683 752 1.1E-29 T 22-04-2016 IPR026891 Fibronectin type III-like domain PP4_RS04850 b6d5515c7db55731b1a95df052d5c231 763 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 45 345 8.1E-81 T 22-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 PP4_RS04850 b6d5515c7db55731b1a95df052d5c231 763 Gene3D G3DSA:3.40.50.1700 492 649 2.6E-79 T 22-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 PP4_RS04850 b6d5515c7db55731b1a95df052d5c231 763 Gene3D G3DSA:3.40.50.1700 378 458 2.6E-79 T 22-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 PP4_RS04850 b6d5515c7db55731b1a95df052d5c231 763 SUPERFAMILY SSF52279 390 459 4.84E-58 T 22-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 PP4_RS04850 b6d5515c7db55731b1a95df052d5c231 763 SUPERFAMILY SSF52279 493 649 4.84E-58 T 22-04-2016 IPR002772 Glycoside hydrolase family 3 C-terminal domain GO:0004553|GO:0005975 PP4_RS04850 b6d5515c7db55731b1a95df052d5c231 763 PANTHER PTHR30620 22 466 0.0 T 22-04-2016 IPR026892 Glycoside hydrolase family 3 GO:0004553 PP4_RS04850 b6d5515c7db55731b1a95df052d5c231 763 PANTHER PTHR30620 485 763 0.0 T 22-04-2016 IPR026892 Glycoside hydrolase family 3 GO:0004553 PP4_RS04850 b6d5515c7db55731b1a95df052d5c231 763 SUPERFAMILY SSF51445 22 389 5.16E-99 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily PP4_RS04850 b6d5515c7db55731b1a95df052d5c231 763 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 268 285 - T 22-04-2016 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 PP4_RS04850 b6d5515c7db55731b1a95df052d5c231 763 Pfam PF14310 Fibronectin type III-like domain 684 752 1.2E-21 T 22-04-2016 IPR026891 Fibronectin type III-like domain PP4_RS04850 b6d5515c7db55731b1a95df052d5c231 763 PANTHER PTHR30620:SF5 22 466 0.0 T 22-04-2016 PP4_RS04850 b6d5515c7db55731b1a95df052d5c231 763 PANTHER PTHR30620:SF5 485 763 0.0 T 22-04-2016 PP4_RS04850 b6d5515c7db55731b1a95df052d5c231 763 Gene3D G3DSA:3.20.20.300 22 364 8.2E-105 T 22-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 PP4_RS04850 b6d5515c7db55731b1a95df052d5c231 763 PRINTS PR00133 Glycosyl hydrolase family 3 signature 268 286 5.5E-24 T 22-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 PP4_RS04850 b6d5515c7db55731b1a95df052d5c231 763 PRINTS PR00133 Glycosyl hydrolase family 3 signature 161 177 5.5E-24 T 22-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 PP4_RS04850 b6d5515c7db55731b1a95df052d5c231 763 PRINTS PR00133 Glycosyl hydrolase family 3 signature 96 112 5.5E-24 T 22-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 PP4_RS04850 b6d5515c7db55731b1a95df052d5c231 763 PRINTS PR00133 Glycosyl hydrolase family 3 signature 198 214 5.5E-24 T 22-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 PP4_RS04850 b6d5515c7db55731b1a95df052d5c231 763 PRINTS PR00133 Glycosyl hydrolase family 3 signature 115 134 5.5E-24 T 22-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 PP4_RS15090 6646224ef53028f92ffb47a125589e8b 1497 Gene3D G3DSA:3.40.50.300 326 373 4.7E-4 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS15090 6646224ef53028f92ffb47a125589e8b 1497 Pfam PF05729 NACHT domain 271 440 2.3E-10 T 22-04-2016 PP4_RS15090 6646224ef53028f92ffb47a125589e8b 1497 SUPERFAMILY SSF52540 263 444 2.85E-9 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS15090 6646224ef53028f92ffb47a125589e8b 1497 Gene3D G3DSA:3.40.50.300 266 280 8.4E-5 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS15090 6646224ef53028f92ffb47a125589e8b 1497 Gene3D G3DSA:3.40.50.300 599 747 8.4E-5 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS15090 6646224ef53028f92ffb47a125589e8b 1497 Gene3D G3DSA:3.40.50.300 281 323 2.3E-5 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS02265 18ef3fc7ce26deb9489b72710c34c268 275 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 263 3.4E-18 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS02265 18ef3fc7ce26deb9489b72710c34c268 275 PANTHER PTHR30193:SF20 10 274 1.1E-97 T 22-04-2016 PP4_RS02265 18ef3fc7ce26deb9489b72710c34c268 275 Gene3D G3DSA:1.10.3720.10 17 268 4.6E-59 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS02265 18ef3fc7ce26deb9489b72710c34c268 275 SUPERFAMILY SSF161098 11 267 2.24E-61 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS02265 18ef3fc7ce26deb9489b72710c34c268 275 PANTHER PTHR30193 10 274 1.1E-97 T 22-04-2016 PP4_RS00450 36598bc6cf094f2bb93f0cd598216224 239 PANTHER PTHR11002:SF13 16 231 7.1E-86 T 22-04-2016 PP4_RS00450 36598bc6cf094f2bb93f0cd598216224 239 Pfam PF00484 Carbonic anhydrase 55 210 6.6E-52 T 22-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PP4_RS00450 36598bc6cf094f2bb93f0cd598216224 239 SMART SM00947 48 215 4.6E-67 T 22-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PP4_RS00450 36598bc6cf094f2bb93f0cd598216224 239 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 60 67 - T 22-04-2016 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PP4_RS00450 36598bc6cf094f2bb93f0cd598216224 239 SUPERFAMILY SSF53056 17 224 1.96E-68 T 22-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PP4_RS00450 36598bc6cf094f2bb93f0cd598216224 239 Gene3D G3DSA:3.40.1050.10 16 223 5.1E-74 T 22-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PP4_RS00450 36598bc6cf094f2bb93f0cd598216224 239 PANTHER PTHR11002 16 231 7.1E-86 T 22-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PP4_RS00450 36598bc6cf094f2bb93f0cd598216224 239 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 103 123 - T 22-04-2016 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PP4_RS26805 a21fa636271280ee9d37f49c1b52342c 475 Gene3D G3DSA:2.60.120.10 320 450 5.2E-19 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS26805 a21fa636271280ee9d37f49c1b52342c 475 SMART SM00100 330 447 2.5E-11 T 22-04-2016 IPR000595 Cyclic nucleotide-binding domain PP4_RS26805 a21fa636271280ee9d37f49c1b52342c 475 Pfam PF00027 Cyclic nucleotide-binding domain 349 434 1.4E-10 T 22-04-2016 IPR000595 Cyclic nucleotide-binding domain PP4_RS26805 a21fa636271280ee9d37f49c1b52342c 475 Gene3D G3DSA:2.30.30.60 168 216 5.0E-14 T 22-04-2016 PP4_RS26805 a21fa636271280ee9d37f49c1b52342c 475 SUPERFAMILY SSF51206 321 443 2.23E-19 T 22-04-2016 IPR018490 Cyclic nucleotide-binding-like PP4_RS26805 a21fa636271280ee9d37f49c1b52342c 475 Pfam PF00924 Mechanosensitive ion channel 111 306 2.5E-30 T 22-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 PP4_RS26805 a21fa636271280ee9d37f49c1b52342c 475 PANTHER PTHR30221 15 353 3.5E-26 T 22-04-2016 PP4_RS26805 a21fa636271280ee9d37f49c1b52342c 475 SUPERFAMILY SSF50182 153 218 4.25E-14 T 22-04-2016 IPR010920 LSM domain PP4_RS26805 a21fa636271280ee9d37f49c1b52342c 475 PIRSF PIRSF026673 1 475 3.4E-191 T 22-04-2016 IPR016846 Predicted ion channel, cNMP-binding PP4_RS00155 b47b18826c836736f50a68794a41be4b 665 Pfam PF00702 haloacid dehalogenase-like hydrolase 350 568 7.3E-40 T 22-04-2016 PP4_RS00155 b47b18826c836736f50a68794a41be4b 665 PANTHER PTHR24093 54 660 6.1E-198 T 22-04-2016 PP4_RS00155 b47b18826c836736f50a68794a41be4b 665 SUPERFAMILY SSF56784 453 655 2.75E-46 T 22-04-2016 IPR023214 HAD-like domain PP4_RS00155 b47b18826c836736f50a68794a41be4b 665 SUPERFAMILY SSF56784 353 371 2.75E-46 T 22-04-2016 IPR023214 HAD-like domain PP4_RS00155 b47b18826c836736f50a68794a41be4b 665 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 355 361 - T 22-04-2016 IPR018303 P-type ATPase, phosphorylation site PP4_RS00155 b47b18826c836736f50a68794a41be4b 665 Pfam PF00122 E1-E2 ATPase 108 344 5.0E-63 T 22-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 PP4_RS00155 b47b18826c836736f50a68794a41be4b 665 PANTHER PTHR24093:SF317 54 660 6.1E-198 T 22-04-2016 PP4_RS00155 b47b18826c836736f50a68794a41be4b 665 Gene3D G3DSA:3.40.50.1000 484 622 8.5E-42 T 22-04-2016 IPR023214 HAD-like domain PP4_RS00155 b47b18826c836736f50a68794a41be4b 665 Gene3D G3DSA:3.40.50.1000 326 367 8.5E-42 T 22-04-2016 IPR023214 HAD-like domain PP4_RS00155 b47b18826c836736f50a68794a41be4b 665 SUPERFAMILY SSF81653 140 253 6.93E-24 T 22-04-2016 PP4_RS00155 b47b18826c836736f50a68794a41be4b 665 Gene3D G3DSA:3.40.1110.10 368 483 2.5E-18 T 22-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 PP4_RS00155 b47b18826c836736f50a68794a41be4b 665 Gene3D G3DSA:2.70.150.10 90 254 3.5E-28 T 22-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 PP4_RS00155 b47b18826c836736f50a68794a41be4b 665 SUPERFAMILY SSF81665 254 347 1.96E-18 T 22-04-2016 PP4_RS00155 b47b18826c836736f50a68794a41be4b 665 SUPERFAMILY SSF81665 90 141 1.96E-18 T 22-04-2016 PP4_RS00155 b47b18826c836736f50a68794a41be4b 665 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 246 388 6.4E-24 T 22-04-2016 IPR001757 P-type ATPase GO:0016021 PP4_RS00155 b47b18826c836736f50a68794a41be4b 665 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 454 637 5.1E-37 T 22-04-2016 IPR001757 P-type ATPase GO:0016021 PP4_RS00155 b47b18826c836736f50a68794a41be4b 665 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 187 201 1.3E-24 T 22-04-2016 PP4_RS00155 b47b18826c836736f50a68794a41be4b 665 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 580 592 1.3E-24 T 22-04-2016 PP4_RS00155 b47b18826c836736f50a68794a41be4b 665 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 504 514 1.3E-24 T 22-04-2016 PP4_RS00155 b47b18826c836736f50a68794a41be4b 665 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 353 367 1.3E-24 T 22-04-2016 PP4_RS00155 b47b18826c836736f50a68794a41be4b 665 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 481 492 1.3E-24 T 22-04-2016 PP4_RS00155 b47b18826c836736f50a68794a41be4b 665 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 556 575 1.3E-24 T 22-04-2016 PP4_RS00155 b47b18826c836736f50a68794a41be4b 665 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 87 658 5.9E-170 T 22-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 PP4_RS17960 537e1353b0ea60b19d3b7b183d9f3f41 700 SUPERFAMILY SSF51735 294 473 5.14E-58 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS17960 537e1353b0ea60b19d3b7b183d9f3f41 700 SUPERFAMILY SSF52096 2 286 1.42E-61 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS17960 537e1353b0ea60b19d3b7b183d9f3f41 700 SUPERFAMILY SSF48179 478 617 2.72E-26 T 22-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PP4_RS17960 537e1353b0ea60b19d3b7b183d9f3f41 700 SUPERFAMILY SSF48179 600 692 3.57E-19 T 22-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PP4_RS17960 537e1353b0ea60b19d3b7b183d9f3f41 700 Gene3D G3DSA:3.40.50.720 294 479 1.8E-59 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS17960 537e1353b0ea60b19d3b7b183d9f3f41 700 PANTHER PTHR23309 1 700 5.7E-281 T 22-04-2016 PP4_RS17960 537e1353b0ea60b19d3b7b183d9f3f41 700 Pfam PF00378 Enoyl-CoA hydratase/isomerase 8 196 1.3E-37 T 22-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 PP4_RS17960 537e1353b0ea60b19d3b7b183d9f3f41 700 Gene3D G3DSA:1.10.1040.10 610 695 4.9E-12 T 22-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PP4_RS17960 537e1353b0ea60b19d3b7b183d9f3f41 700 Gene3D G3DSA:3.90.226.10 1 279 7.2E-60 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS17960 537e1353b0ea60b19d3b7b183d9f3f41 700 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 298 473 1.1E-62 T 22-04-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 PP4_RS17960 537e1353b0ea60b19d3b7b183d9f3f41 700 Gene3D G3DSA:1.10.1040.10 480 572 5.7E-21 T 22-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PP4_RS17960 537e1353b0ea60b19d3b7b183d9f3f41 700 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 606 698 7.0E-7 T 22-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 PP4_RS17960 537e1353b0ea60b19d3b7b183d9f3f41 700 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 478 571 7.2E-24 T 22-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 PP4_RS17960 537e1353b0ea60b19d3b7b183d9f3f41 700 PANTHER PTHR23309:SF9 1 700 5.7E-281 T 22-04-2016 PP4_RS09670 d396b8e44fe5da765042caebafbe2143 362 PRINTS PR00139 Asparaginase/glutaminase family signature 117 135 2.3E-21 T 22-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 PP4_RS09670 d396b8e44fe5da765042caebafbe2143 362 PRINTS PR00139 Asparaginase/glutaminase family signature 295 313 2.3E-21 T 22-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 PP4_RS09670 d396b8e44fe5da765042caebafbe2143 362 PRINTS PR00139 Asparaginase/glutaminase family signature 37 48 2.3E-21 T 22-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 PP4_RS09670 d396b8e44fe5da765042caebafbe2143 362 PIRSF PIRSF500176 33 362 1.4E-75 T 22-04-2016 PP4_RS09670 d396b8e44fe5da765042caebafbe2143 362 SMART SM00870 36 356 2.6E-129 T 22-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 PP4_RS09670 d396b8e44fe5da765042caebafbe2143 362 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 39 47 - T 22-04-2016 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 PP4_RS09670 d396b8e44fe5da765042caebafbe2143 362 Gene3D G3DSA:3.40.50.1170 33 243 6.3E-64 T 22-04-2016 IPR027474 L-asparaginase, N-terminal PP4_RS09670 d396b8e44fe5da765042caebafbe2143 362 ProSitePatterns PS00917 Asparaginase / glutaminase active site signature 2. 118 128 - T 22-04-2016 IPR027475 Asparaginase/glutaminase, active site 2 PP4_RS09670 d396b8e44fe5da765042caebafbe2143 362 PIRSF PIRSF001220 31 362 2.3E-84 T 22-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 PP4_RS09670 d396b8e44fe5da765042caebafbe2143 362 PANTHER PTHR11707:SF29 28 359 5.0E-86 T 22-04-2016 PP4_RS09670 d396b8e44fe5da765042caebafbe2143 362 Gene3D G3DSA:3.40.50.40 248 360 7.6E-37 T 22-04-2016 IPR027473 L-asparaginase, C-terminal domain PP4_RS09670 d396b8e44fe5da765042caebafbe2143 362 SUPERFAMILY SSF53774 34 361 1.31E-97 T 22-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 PP4_RS09670 d396b8e44fe5da765042caebafbe2143 362 Pfam PF00710 Asparaginase, N-terminal 36 221 9.5E-53 T 22-04-2016 IPR027474 L-asparaginase, N-terminal PP4_RS09670 d396b8e44fe5da765042caebafbe2143 362 TIGRFAM TIGR00520 asnASE_II: L-asparaginase, type II 24 362 3.4E-119 T 22-04-2016 IPR004550 L-asparaginase, type II GO:0004067|GO:0006528 PP4_RS09670 d396b8e44fe5da765042caebafbe2143 362 PANTHER PTHR11707 28 359 5.0E-86 T 22-04-2016 PP4_RS23690 88107cbf7e18666784646ac4d707470b 132 PANTHER PTHR34182 3 127 1.2E-27 T 22-04-2016 PP4_RS23690 88107cbf7e18666784646ac4d707470b 132 Pfam PF03840 Preprotein translocase SecG subunit 5 73 1.6E-19 T 22-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 PP4_RS23690 88107cbf7e18666784646ac4d707470b 132 PRINTS PR01651 Protein-export SecG membrane protein signature 4 24 7.2E-39 T 22-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 PP4_RS23690 88107cbf7e18666784646ac4d707470b 132 PRINTS PR01651 Protein-export SecG membrane protein signature 24 38 7.2E-39 T 22-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 PP4_RS23690 88107cbf7e18666784646ac4d707470b 132 PRINTS PR01651 Protein-export SecG membrane protein signature 55 77 7.2E-39 T 22-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 PP4_RS23690 88107cbf7e18666784646ac4d707470b 132 PRINTS PR01651 Protein-export SecG membrane protein signature 39 55 7.2E-39 T 22-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 PP4_RS23690 88107cbf7e18666784646ac4d707470b 132 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 4 74 1.4E-24 T 22-04-2016 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 PP4_RS15505 174b67bce61f32b6d96463d9c16edf46 169 SMART SM00945 39 153 9.2E-43 T 22-04-2016 IPR016103 ProQ/FinO domain PP4_RS15505 174b67bce61f32b6d96463d9c16edf46 169 SUPERFAMILY SSF48657 5 151 2.35E-38 T 22-04-2016 IPR016103 ProQ/FinO domain PP4_RS15505 174b67bce61f32b6d96463d9c16edf46 169 Pfam PF04352 ProQ/FINO family 43 149 7.4E-28 T 22-04-2016 IPR016103 ProQ/FinO domain PP4_RS15505 174b67bce61f32b6d96463d9c16edf46 169 PANTHER PTHR38106 35 169 1.5E-33 T 22-04-2016 PP4_RS15505 174b67bce61f32b6d96463d9c16edf46 169 Gene3D G3DSA:1.10.1710.10 15 150 2.4E-22 T 22-04-2016 IPR016103 ProQ/FinO domain PP4_RS15505 174b67bce61f32b6d96463d9c16edf46 169 PANTHER PTHR38106:SF1 35 169 1.5E-33 T 22-04-2016 PP4_RS00235 6837e8e7821de24cedaf2870b044e55d 548 SUPERFAMILY SSF54373 293 476 4.61E-59 T 22-04-2016 PP4_RS00235 6837e8e7821de24cedaf2870b044e55d 548 PANTHER PTHR11552:SF51 1 537 2.6E-215 T 22-04-2016 PP4_RS00235 6837e8e7821de24cedaf2870b044e55d 548 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 257 271 - T 22-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 PP4_RS00235 6837e8e7821de24cedaf2870b044e55d 548 SUPERFAMILY SSF51905 6 291 9.39E-85 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS00235 6837e8e7821de24cedaf2870b044e55d 548 SUPERFAMILY SSF51905 475 533 9.39E-85 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS00235 6837e8e7821de24cedaf2870b044e55d 548 Pfam PF00732 GMC oxidoreductase 8 298 4.9E-79 T 22-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 PP4_RS00235 6837e8e7821de24cedaf2870b044e55d 548 Gene3D G3DSA:3.30.410.10 328 475 3.8E-5 T 22-04-2016 PP4_RS00235 6837e8e7821de24cedaf2870b044e55d 548 Pfam PF05199 GMC oxidoreductase 390 526 6.5E-38 T 22-04-2016 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 PP4_RS00235 6837e8e7821de24cedaf2870b044e55d 548 Gene3D G3DSA:3.50.50.60 476 532 3.6E-115 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS00235 6837e8e7821de24cedaf2870b044e55d 548 Gene3D G3DSA:3.50.50.60 5 129 3.6E-115 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS00235 6837e8e7821de24cedaf2870b044e55d 548 Gene3D G3DSA:3.50.50.60 190 316 3.6E-115 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS00235 6837e8e7821de24cedaf2870b044e55d 548 PIRSF PIRSF000137 2 539 6.5E-144 T 22-04-2016 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|UniPathway: UPA00529 PP4_RS00235 6837e8e7821de24cedaf2870b044e55d 548 PANTHER PTHR11552 1 537 2.6E-215 T 22-04-2016 PP4_RS05955 6c02be803201d0cc6df7afee6e0a622f 319 Gene3D G3DSA:1.20.1510.10 18 226 3.3E-23 T 22-04-2016 IPR027469 Cation efflux protein transmembrane domain PP4_RS05955 6c02be803201d0cc6df7afee6e0a622f 319 SUPERFAMILY SSF161111 15 227 1.57E-29 T 22-04-2016 PP4_RS05955 6c02be803201d0cc6df7afee6e0a622f 319 Pfam PF01545 Cation efflux family 19 228 2.0E-33 T 22-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 PP4_RS11200 8e298bc8365ad3a4773ae194732afba9 447 Pfam PF00034 Cytochrome c 197 304 1.7E-4 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS11200 8e298bc8365ad3a4773ae194732afba9 447 PIRSF PIRSF000018 17 444 3.0E-153 T 22-04-2016 IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit GO:0005506|GO:0016020|GO:0016614|GO:0020037 PP4_RS11200 8e298bc8365ad3a4773ae194732afba9 447 PANTHER PTHR35008:SF3 40 431 4.0E-165 T 22-04-2016 PP4_RS11200 8e298bc8365ad3a4773ae194732afba9 447 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 329 411 5.2E-10 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS11200 8e298bc8365ad3a4773ae194732afba9 447 PRINTS PR00605 Class IC cytochrome C signature 336 347 5.4E-5 T 22-04-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 PP4_RS11200 8e298bc8365ad3a4773ae194732afba9 447 PRINTS PR00605 Class IC cytochrome C signature 389 411 5.4E-5 T 22-04-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 PP4_RS11200 8e298bc8365ad3a4773ae194732afba9 447 SUPERFAMILY SSF46626 330 431 1.98E-20 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS11200 8e298bc8365ad3a4773ae194732afba9 447 Gene3D G3DSA:1.10.760.10 330 433 1.3E-23 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS11200 8e298bc8365ad3a4773ae194732afba9 447 PANTHER PTHR35008 40 431 4.0E-165 T 22-04-2016 PP4_RS11200 8e298bc8365ad3a4773ae194732afba9 447 SUPERFAMILY SSF46626 191 304 6.54E-22 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS11200 8e298bc8365ad3a4773ae194732afba9 447 Gene3D G3DSA:1.10.760.10 45 147 9.5E-16 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS11200 8e298bc8365ad3a4773ae194732afba9 447 Gene3D G3DSA:1.10.760.10 191 304 1.3E-15 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS11200 8e298bc8365ad3a4773ae194732afba9 447 SUPERFAMILY SSF46626 40 172 4.92E-22 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS05905 7107bdf92be27fd4700652028740091a 150 PANTHER PTHR31793:SF9 4 139 9.1E-49 T 22-04-2016 PP4_RS05905 7107bdf92be27fd4700652028740091a 150 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 13 130 3.7E-34 T 22-04-2016 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 PP4_RS05905 7107bdf92be27fd4700652028740091a 150 Pfam PF03061 Thioesterase superfamily 24 107 9.3E-18 T 22-04-2016 IPR006683 Thioesterase domain PP4_RS05905 7107bdf92be27fd4700652028740091a 150 TIGRFAM TIGR02799 thio_ybgC: tol-pal system-associated acyl-CoA thioesterase 10 135 7.3E-49 T 22-04-2016 IPR014166 Tol-Pal system-associated acyl-CoA thioesterase GO:0016790 KEGG: 00360+3.1.2.-|KEGG: 00362+3.1.2.-|KEGG: 00592+3.1.2.-|KEGG: 00903+3.1.2.- PP4_RS05905 7107bdf92be27fd4700652028740091a 150 Gene3D G3DSA:3.10.129.10 9 139 1.3E-47 T 22-04-2016 IPR029069 HotDog domain PP4_RS05905 7107bdf92be27fd4700652028740091a 150 SUPERFAMILY SSF54637 9 138 1.29E-41 T 22-04-2016 IPR029069 HotDog domain PP4_RS05905 7107bdf92be27fd4700652028740091a 150 PIRSF PIRSF003230 2 142 7.0E-46 T 22-04-2016 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 PP4_RS05905 7107bdf92be27fd4700652028740091a 150 PANTHER PTHR31793 4 139 9.1E-49 T 22-04-2016 PP4_RS16685 531c05858f7d8696591274e445fdb4f5 594 Gene3D G3DSA:3.40.50.300 10 263 2.3E-65 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS16685 531c05858f7d8696591274e445fdb4f5 594 ProSitePatterns PS00211 ABC transporters family signature. 485 499 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS16685 531c05858f7d8696591274e445fdb4f5 594 ProSitePatterns PS00211 ABC transporters family signature. 160 174 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS16685 531c05858f7d8696591274e445fdb4f5 594 SUPERFAMILY SSF52540 8 265 8.63E-57 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS16685 531c05858f7d8696591274e445fdb4f5 594 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 238 321 1.1E-23 T 22-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 PP4_RS16685 531c05858f7d8696591274e445fdb4f5 594 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 563 591 0.34 T 22-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 PP4_RS16685 531c05858f7d8696591274e445fdb4f5 594 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 239 302 9.1E-18 T 22-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 PP4_RS16685 531c05858f7d8696591274e445fdb4f5 594 PANTHER PTHR24220:SF574 13 291 3.4E-119 T 22-04-2016 PP4_RS16685 531c05858f7d8696591274e445fdb4f5 594 PANTHER PTHR24220:SF574 361 470 3.4E-119 T 22-04-2016 PP4_RS16685 531c05858f7d8696591274e445fdb4f5 594 SUPERFAMILY SSF52540 346 583 1.54E-62 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS16685 531c05858f7d8696591274e445fdb4f5 594 Gene3D G3DSA:3.40.50.300 346 585 3.8E-74 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS16685 531c05858f7d8696591274e445fdb4f5 594 Pfam PF00005 ABC transporter 29 187 1.3E-24 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS16685 531c05858f7d8696591274e445fdb4f5 594 Pfam PF00005 ABC transporter 363 513 1.3E-30 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS16685 531c05858f7d8696591274e445fdb4f5 594 SMART SM00382 370 561 1.6E-19 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS16685 531c05858f7d8696591274e445fdb4f5 594 SMART SM00382 37 237 4.1E-18 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS16685 531c05858f7d8696591274e445fdb4f5 594 PANTHER PTHR24220 13 291 3.4E-119 T 22-04-2016 PP4_RS16685 531c05858f7d8696591274e445fdb4f5 594 PANTHER PTHR24220 361 470 3.4E-119 T 22-04-2016 PP4_RS12655 fdfca8d33336d3b53241fca8115e9c45 520 PANTHER PTHR32309 11 473 2.6E-35 T 22-04-2016 PP4_RS12655 fdfca8d33336d3b53241fca8115e9c45 520 PANTHER PTHR32309 497 508 2.6E-35 T 22-04-2016 PP4_RS12655 fdfca8d33336d3b53241fca8115e9c45 520 Pfam PF02706 Chain length determinant protein 7 155 1.1E-6 T 22-04-2016 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 PP4_RS12655 fdfca8d33336d3b53241fca8115e9c45 520 PANTHER PTHR32309:SF13 11 473 2.6E-35 T 22-04-2016 PP4_RS12655 fdfca8d33336d3b53241fca8115e9c45 520 PANTHER PTHR32309:SF13 497 508 2.6E-35 T 22-04-2016 PP4_RS03110 cffa65cddb4f4130c35502782ddf0477 179 PANTHER PTHR30173:SF9 16 168 2.4E-34 T 22-04-2016 PP4_RS03110 cffa65cddb4f4130c35502782ddf0477 179 SUPERFAMILY SSF88946 15 109 1.18E-11 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS03110 cffa65cddb4f4130c35502782ddf0477 179 Pfam PF08281 Sigma-70, region 4 120 169 1.2E-12 T 22-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS03110 cffa65cddb4f4130c35502782ddf0477 179 PANTHER PTHR30173 16 168 2.4E-34 T 22-04-2016 PP4_RS03110 cffa65cddb4f4130c35502782ddf0477 179 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 21 168 1.1E-13 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS03110 cffa65cddb4f4130c35502782ddf0477 179 Pfam PF04542 Sigma-70 region 2 20 89 9.0E-8 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS03110 cffa65cddb4f4130c35502782ddf0477 179 SUPERFAMILY SSF88659 115 176 2.62E-11 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS03110 cffa65cddb4f4130c35502782ddf0477 179 Gene3D G3DSA:1.10.10.10 117 169 1.2E-11 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS03110 cffa65cddb4f4130c35502782ddf0477 179 Gene3D G3DSA:1.10.1740.10 16 110 7.8E-10 T 22-04-2016 PP4_RS19725 669294335bd11552cae68ec23ee06179 216 PIRSF PIRSF023956 1 216 6.1E-74 T 22-04-2016 IPR025835 Thiopurine S-methyltransferase GO:0008119 KEGG: 00983+2.1.1.67 PP4_RS19725 669294335bd11552cae68ec23ee06179 216 TIGRFAM TIGR03840 TMPT_Se_Te: thiopurine S-methyltransferase, Se/Te detoxification family 5 214 2.3E-83 T 22-04-2016 IPR022474 Thiopurine S-methyltransferase, Se/Te detoxification GO:0008119|GO:0010038|GO:0032259 KEGG: 00983+2.1.1.67 PP4_RS19725 669294335bd11552cae68ec23ee06179 216 Hamap MF_00812 Thiopurine S-methyltransferase [tpm]. 1 216 39.501 T 22-04-2016 IPR025835 Thiopurine S-methyltransferase GO:0008119 KEGG: 00983+2.1.1.67 PP4_RS19725 669294335bd11552cae68ec23ee06179 216 Gene3D G3DSA:3.40.50.150 16 214 5.1E-63 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS19725 669294335bd11552cae68ec23ee06179 216 PANTHER PTHR10259:SF16 1 216 2.8E-87 T 22-04-2016 PP4_RS19725 669294335bd11552cae68ec23ee06179 216 SUPERFAMILY SSF53335 1 214 1.46E-54 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS19725 669294335bd11552cae68ec23ee06179 216 PANTHER PTHR10259 1 216 2.8E-87 T 22-04-2016 PP4_RS19725 669294335bd11552cae68ec23ee06179 216 Pfam PF05724 Thiopurine S-methyltransferase (TPMT) 1 215 2.2E-75 T 22-04-2016 IPR008854 TPMT family GO:0008757 KEGG: 00983+2.1.1.67 PP4_RS02760 faa434ea8cea10d5b0b7f0d1d2f717e6 310 Gene3D G3DSA:3.90.25.10 178 294 5.0E-32 T 22-04-2016 PP4_RS02760 faa434ea8cea10d5b0b7f0d1d2f717e6 310 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 243 7.3E-68 T 22-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 PP4_RS02760 faa434ea8cea10d5b0b7f0d1d2f717e6 310 PANTHER PTHR10366 5 307 5.8E-99 T 22-04-2016 PP4_RS02760 faa434ea8cea10d5b0b7f0d1d2f717e6 310 SUPERFAMILY SSF51735 5 307 2.26E-89 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS02760 faa434ea8cea10d5b0b7f0d1d2f717e6 310 Gene3D G3DSA:3.40.50.720 4 177 3.9E-57 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS02760 faa434ea8cea10d5b0b7f0d1d2f717e6 310 PANTHER PTHR10366:SF466 5 307 5.8E-99 T 22-04-2016 PP4_RS17005 00c56c76a5cfb81bc747bdddf2d254e0 114 Pfam PF02627 Carboxymuconolactone decarboxylase family 26 107 3.0E-20 T 22-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 PP4_RS17005 00c56c76a5cfb81bc747bdddf2d254e0 114 Gene3D G3DSA:1.20.1290.10 4 111 3.1E-37 T 22-04-2016 IPR029032 AhpD-like PP4_RS17005 00c56c76a5cfb81bc747bdddf2d254e0 114 PANTHER PTHR33930 3 109 3.4E-25 T 22-04-2016 PP4_RS17005 00c56c76a5cfb81bc747bdddf2d254e0 114 SUPERFAMILY SSF69118 6 110 6.28E-29 T 22-04-2016 IPR029032 AhpD-like PP4_RS17005 00c56c76a5cfb81bc747bdddf2d254e0 114 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 43 90 3.5E-19 T 22-04-2016 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 PP4_RS17005 00c56c76a5cfb81bc747bdddf2d254e0 114 PANTHER PTHR33930:SF2 3 109 3.4E-25 T 22-04-2016 PP4_RS21470 89ce577f4f9f99c33e8f78d1dee06315 358 Pfam PF12693 GspL periplasmic domain 220 349 8.4E-24 T 22-04-2016 IPR025691 GspL periplasmic domain PP4_RS21470 89ce577f4f9f99c33e8f78d1dee06315 358 Pfam PF05134 Type II secretion system (T2SS), protein L 46 189 9.8E-7 T 22-04-2016 IPR024230 GspL, cytoplasmic actin-ATPase-like domain PP4_RS21470 89ce577f4f9f99c33e8f78d1dee06315 358 TIGRFAM TIGR01709 typeII_sec_gspL: type II secretion system protein L 19 349 4.4E-57 T 22-04-2016 IPR007812 Type II secretion system protein L GO:0008565|GO:0009276|GO:0015031|GO:0016021 PP4_RS21470 89ce577f4f9f99c33e8f78d1dee06315 358 SUPERFAMILY SSF53067 21 137 1.15E-20 T 22-04-2016 PP4_RS03785 14ff304cd33bb6285d64f07b69c1eedb 433 Gene3D G3DSA:2.60.120.10 195 220 1.4E-4 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS03785 14ff304cd33bb6285d64f07b69c1eedb 433 Gene3D G3DSA:2.60.120.10 244 398 1.2E-61 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS03785 14ff304cd33bb6285d64f07b69c1eedb 433 TIGRFAM TIGR01015 hmgA: homogentisate 1,2-dioxygenase 9 428 2.2E-191 T 22-04-2016 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|UniPathway: UPA00139 PP4_RS03785 14ff304cd33bb6285d64f07b69c1eedb 433 Pfam PF04209 homogentisate 1,2-dioxygenase 10 428 1.1E-202 T 22-04-2016 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|UniPathway: UPA00139 PP4_RS03785 14ff304cd33bb6285d64f07b69c1eedb 433 Hamap MF_00334 Homogentisate 1,2-dioxygenase [hmgA]. 10 430 69.926 T 22-04-2016 IPR022950 Homogentisate 1,2-dioxygenase, bacterial GO:0004411|GO:0006559|GO:0006572|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|UniPathway: UPA00139 PP4_RS03785 14ff304cd33bb6285d64f07b69c1eedb 433 PANTHER PTHR11056 1 433 4.2E-239 T 22-04-2016 IPR005708 Homogentisate 1,2-dioxygenase GO:0004411|GO:0006559|GO:0006570|GO:0055114 KEGG: 00350+1.13.11.5|KEGG: 00643+1.13.11.5|UniPathway: UPA00139 PP4_RS03785 14ff304cd33bb6285d64f07b69c1eedb 433 PANTHER PTHR11056:SF0 1 433 4.2E-239 T 22-04-2016 PP4_RS03785 14ff304cd33bb6285d64f07b69c1eedb 433 SUPERFAMILY SSF51182 8 433 2.67E-160 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS01500 8603abccaa3839ceda9cb0abca4a4d1a 765 SUPERFAMILY SSF56935 73 765 1.75E-112 T 22-04-2016 PP4_RS01500 8603abccaa3839ceda9cb0abca4a4d1a 765 Gene3D G3DSA:2.40.170.20 198 765 1.7E-120 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS01500 8603abccaa3839ceda9cb0abca4a4d1a 765 Gene3D G3DSA:2.170.130.10 65 190 1.2E-29 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS01500 8603abccaa3839ceda9cb0abca4a4d1a 765 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 748 765 - T 22-04-2016 IPR010917 TonB-dependent receptor, conserved site PP4_RS01500 8603abccaa3839ceda9cb0abca4a4d1a 765 PANTHER PTHR32552 73 445 6.4E-164 T 22-04-2016 PP4_RS01500 8603abccaa3839ceda9cb0abca4a4d1a 765 PANTHER PTHR32552 471 765 6.4E-164 T 22-04-2016 PP4_RS01500 8603abccaa3839ceda9cb0abca4a4d1a 765 PANTHER PTHR32552 23 50 6.4E-164 T 22-04-2016 PP4_RS01500 8603abccaa3839ceda9cb0abca4a4d1a 765 PANTHER PTHR32552:SF37 73 445 6.4E-164 T 22-04-2016 PP4_RS01500 8603abccaa3839ceda9cb0abca4a4d1a 765 PANTHER PTHR32552:SF37 471 765 6.4E-164 T 22-04-2016 PP4_RS01500 8603abccaa3839ceda9cb0abca4a4d1a 765 PANTHER PTHR32552:SF37 23 50 6.4E-164 T 22-04-2016 PP4_RS01500 8603abccaa3839ceda9cb0abca4a4d1a 765 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 84 765 2.0E-93 T 22-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 PP4_RS01500 8603abccaa3839ceda9cb0abca4a4d1a 765 Pfam PF07715 TonB-dependent Receptor Plug Domain 81 182 7.0E-16 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS01500 8603abccaa3839ceda9cb0abca4a4d1a 765 Pfam PF00593 TonB dependent receptor 521 762 1.8E-27 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS26650 f9d725d59e6315158b583c9bd34b2a46 108 PRINTS PR00421 Thioredoxin family signature 24 32 6.2E-10 T 22-04-2016 PP4_RS26650 f9d725d59e6315158b583c9bd34b2a46 108 PRINTS PR00421 Thioredoxin family signature 72 83 6.2E-10 T 22-04-2016 PP4_RS26650 f9d725d59e6315158b583c9bd34b2a46 108 PRINTS PR00421 Thioredoxin family signature 32 41 6.2E-10 T 22-04-2016 PP4_RS26650 f9d725d59e6315158b583c9bd34b2a46 108 Gene3D G3DSA:3.40.30.10 2 107 1.0E-38 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS26650 f9d725d59e6315158b583c9bd34b2a46 108 ProSitePatterns PS00194 Thioredoxin family active site. 25 43 - T 22-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 PP4_RS26650 f9d725d59e6315158b583c9bd34b2a46 108 TIGRFAM TIGR01068 thioredoxin: thioredoxin 9 107 7.6E-38 T 22-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 PP4_RS26650 f9d725d59e6315158b583c9bd34b2a46 108 SUPERFAMILY SSF52833 2 108 2.95E-39 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS26650 f9d725d59e6315158b583c9bd34b2a46 108 PANTHER PTHR10438 3 108 3.8E-39 T 22-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 PP4_RS26650 f9d725d59e6315158b583c9bd34b2a46 108 Pfam PF00085 Thioredoxin 5 107 1.1E-34 T 22-04-2016 IPR013766 Thioredoxin domain GO:0045454 PP4_RS26650 f9d725d59e6315158b583c9bd34b2a46 108 PIRSF PIRSF000077 2 108 9.2E-45 T 22-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 PP4_RS20700 be1c892ce6cfd9c71743e3e3cc3bb667 352 Pfam PF00586 AIR synthase related protein, N-terminal domain 58 164 3.0E-15 T 22-04-2016 IPR016188 PurM-like, N-terminal domain PP4_RS20700 be1c892ce6cfd9c71743e3e3cc3bb667 352 SUPERFAMILY SSF55326 7 170 2.09E-51 T 22-04-2016 PP4_RS20700 be1c892ce6cfd9c71743e3e3cc3bb667 352 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 7 346 45.397 T 22-04-2016 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 PP4_RS20700 be1c892ce6cfd9c71743e3e3cc3bb667 352 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 7 336 3.7E-141 T 22-04-2016 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 PP4_RS20700 be1c892ce6cfd9c71743e3e3cc3bb667 352 SUPERFAMILY SSF56042 171 343 7.03E-60 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain PP4_RS20700 be1c892ce6cfd9c71743e3e3cc3bb667 352 Gene3D G3DSA:3.30.1330.10 22 170 8.7E-61 T 22-04-2016 IPR016188 PurM-like, N-terminal domain PP4_RS20700 be1c892ce6cfd9c71743e3e3cc3bb667 352 Gene3D G3DSA:3.90.650.10 171 344 1.1E-64 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain PP4_RS20700 be1c892ce6cfd9c71743e3e3cc3bb667 352 PANTHER PTHR10520 7 346 1.5E-212 T 22-04-2016 PP4_RS20700 be1c892ce6cfd9c71743e3e3cc3bb667 352 Pfam PF02769 AIR synthase related protein, C-terminal domain 177 344 8.1E-38 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain PP4_RS22925 62f1160a88d8b413acaa2f2787b965e0 194 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 17 30 - T 22-04-2016 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 PP4_RS22925 62f1160a88d8b413acaa2f2787b965e0 194 PANTHER PTHR17224 6 193 1.3E-79 T 22-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 PP4_RS22925 62f1160a88d8b413acaa2f2787b965e0 194 ProSitePatterns PS01196 Peptidyl-tRNA hydrolase signature 2. 111 121 - T 22-04-2016 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 PP4_RS22925 62f1160a88d8b413acaa2f2787b965e0 194 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 4 183 35.177 T 22-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 PP4_RS22925 62f1160a88d8b413acaa2f2787b965e0 194 PANTHER PTHR17224:SF1 6 193 1.3E-79 T 22-04-2016 PP4_RS22925 62f1160a88d8b413acaa2f2787b965e0 194 Gene3D G3DSA:3.40.50.1470 5 192 2.4E-69 T 22-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 PP4_RS22925 62f1160a88d8b413acaa2f2787b965e0 194 Pfam PF01195 Peptidyl-tRNA hydrolase 6 188 2.5E-53 T 22-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 PP4_RS22925 62f1160a88d8b413acaa2f2787b965e0 194 SUPERFAMILY SSF53178 4 191 9.81E-68 T 22-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 PP4_RS22925 62f1160a88d8b413acaa2f2787b965e0 194 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 5 190 5.2E-64 T 22-04-2016 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 PP4_RS05305 9897d572d43eaa52e6281cf82e8daee2 69 PRINTS PR00050 Cold shock protein signature 42 60 5.37E-16 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PP4_RS05305 9897d572d43eaa52e6281cf82e8daee2 69 PRINTS PR00050 Cold shock protein signature 27 36 5.37E-16 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PP4_RS05305 9897d572d43eaa52e6281cf82e8daee2 69 PRINTS PR00050 Cold shock protein signature 7 22 5.37E-16 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PP4_RS05305 9897d572d43eaa52e6281cf82e8daee2 69 Gene3D G3DSA:2.40.50.140 5 68 3.6E-30 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS05305 9897d572d43eaa52e6281cf82e8daee2 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 36 - T 22-04-2016 IPR019844 Cold-shock conserved site PP4_RS05305 9897d572d43eaa52e6281cf82e8daee2 69 PANTHER PTHR11544:SF63 1 68 3.3E-36 T 22-04-2016 PP4_RS05305 9897d572d43eaa52e6281cf82e8daee2 69 SMART SM00357 6 69 1.7E-26 T 22-04-2016 IPR011129 Cold shock protein GO:0003676 PP4_RS05305 9897d572d43eaa52e6281cf82e8daee2 69 Pfam PF00313 'Cold-shock' DNA-binding domain 6 67 1.4E-28 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PP4_RS05305 9897d572d43eaa52e6281cf82e8daee2 69 PANTHER PTHR11544 1 68 3.3E-36 T 22-04-2016 PP4_RS05305 9897d572d43eaa52e6281cf82e8daee2 69 SUPERFAMILY SSF50249 3 68 1.32E-23 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS05305 9897d572d43eaa52e6281cf82e8daee2 69 PIRSF PIRSF002599 1 69 7.9E-23 T 22-04-2016 IPR012156 Cold shock, CspA GO:0003676 PP4_RS24410 94c84b22bc9a969c0ccd94eaa28e9f2d 158 SUPERFAMILY SSF46785 3 93 3.08E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS24410 94c84b22bc9a969c0ccd94eaa28e9f2d 158 Gene3D G3DSA:3.30.70.920 57 142 1.8E-28 T 22-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PP4_RS24410 94c84b22bc9a969c0ccd94eaa28e9f2d 158 SMART SM00344 4 114 3.9E-42 T 22-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 PP4_RS24410 94c84b22bc9a969c0ccd94eaa28e9f2d 158 PANTHER PTHR30154 1 158 9.5E-101 T 22-04-2016 PP4_RS24410 94c84b22bc9a969c0ccd94eaa28e9f2d 158 ProSitePatterns PS00519 AsnC-type HTH domain signature. 22 48 - T 22-04-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PP4_RS24410 94c84b22bc9a969c0ccd94eaa28e9f2d 158 Pfam PF01037 Lrp/AsnC ligand binding domain 70 145 1.6E-22 T 22-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PP4_RS24410 94c84b22bc9a969c0ccd94eaa28e9f2d 158 Gene3D G3DSA:1.10.10.10 5 56 3.2E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS24410 94c84b22bc9a969c0ccd94eaa28e9f2d 158 PANTHER PTHR30154:SF19 1 158 9.5E-101 T 22-04-2016 PP4_RS24410 94c84b22bc9a969c0ccd94eaa28e9f2d 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 8.4E-19 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS24410 94c84b22bc9a969c0ccd94eaa28e9f2d 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 8.4E-19 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS24410 94c84b22bc9a969c0ccd94eaa28e9f2d 158 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 8.4E-19 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS24410 94c84b22bc9a969c0ccd94eaa28e9f2d 158 SUPERFAMILY SSF54909 64 154 2.55E-19 T 22-04-2016 IPR011008 Dimeric alpha-beta barrel PP4_RS24410 94c84b22bc9a969c0ccd94eaa28e9f2d 158 Pfam PF13412 Winged helix-turn-helix DNA-binding 4 50 5.6E-22 T 22-04-2016 PP4_RS04990 6b1a50f436f1002dba15da842f4cdb5e 599 SUPERFAMILY SSF54980 403 496 4.32E-25 T 22-04-2016 IPR009022 Elongation factor G, III-V domain PP4_RS04990 6b1a50f436f1002dba15da842f4cdb5e 599 SUPERFAMILY SSF54980 295 373 2.45E-18 T 22-04-2016 IPR009022 Elongation factor G, III-V domain PP4_RS04990 6b1a50f436f1002dba15da842f4cdb5e 599 TIGRFAM TIGR01393 lepA: elongation factor 4 6 597 1.2E-293 T 22-04-2016 IPR006297 Elongation factor 4 GO:0005525 PP4_RS04990 6b1a50f436f1002dba15da842f4cdb5e 599 Gene3D G3DSA:2.40.30.10 197 292 5.6E-21 T 22-04-2016 PP4_RS04990 6b1a50f436f1002dba15da842f4cdb5e 599 Pfam PF00009 Elongation factor Tu GTP binding domain 6 184 4.0E-51 T 22-04-2016 PP4_RS04990 6b1a50f436f1002dba15da842f4cdb5e 599 Hamap MF_00071 Elongation factor 4 [lepA]. 1 599 301.334 T 22-04-2016 IPR006297 Elongation factor 4 GO:0005525 PP4_RS04990 6b1a50f436f1002dba15da842f4cdb5e 599 Gene3D G3DSA:3.40.50.300 4 196 2.2E-58 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS04990 6b1a50f436f1002dba15da842f4cdb5e 599 Pfam PF00679 Elongation factor G C-terminus 403 487 2.0E-20 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain PP4_RS04990 6b1a50f436f1002dba15da842f4cdb5e 599 PANTHER PTHR23115:SF175 400 598 5.4E-278 T 22-04-2016 PP4_RS04990 6b1a50f436f1002dba15da842f4cdb5e 599 PANTHER PTHR23115:SF175 7 376 5.4E-278 T 22-04-2016 PP4_RS04990 6b1a50f436f1002dba15da842f4cdb5e 599 Pfam PF06421 GTP-binding protein LepA C-terminus 490 596 3.6E-50 T 22-04-2016 IPR013842 GTP-binding protein LepA, C-terminal PP4_RS04990 6b1a50f436f1002dba15da842f4cdb5e 599 PRINTS PR00315 GTP-binding elongation factor signature 93 104 8.8E-14 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS04990 6b1a50f436f1002dba15da842f4cdb5e 599 PRINTS PR00315 GTP-binding elongation factor signature 129 138 8.8E-14 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS04990 6b1a50f436f1002dba15da842f4cdb5e 599 PRINTS PR00315 GTP-binding elongation factor signature 77 87 8.8E-14 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS04990 6b1a50f436f1002dba15da842f4cdb5e 599 PRINTS PR00315 GTP-binding elongation factor signature 9 22 8.8E-14 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS04990 6b1a50f436f1002dba15da842f4cdb5e 599 PRINTS PR00315 GTP-binding elongation factor signature 52 60 8.8E-14 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS04990 6b1a50f436f1002dba15da842f4cdb5e 599 Pfam PF03144 Elongation factor Tu domain 2 208 278 6.3E-9 T 22-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 PP4_RS04990 6b1a50f436f1002dba15da842f4cdb5e 599 Gene3D G3DSA:3.30.70.240 404 492 3.2E-21 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain PP4_RS04990 6b1a50f436f1002dba15da842f4cdb5e 599 PANTHER PTHR23115 7 376 5.4E-278 T 22-04-2016 PP4_RS04990 6b1a50f436f1002dba15da842f4cdb5e 599 Gene3D G3DSA:3.30.70.870 295 372 8.4E-26 T 22-04-2016 PP4_RS04990 6b1a50f436f1002dba15da842f4cdb5e 599 SUPERFAMILY SSF52540 3 232 2.53E-55 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS04990 6b1a50f436f1002dba15da842f4cdb5e 599 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 176 2.1E-18 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 PP4_RS04990 6b1a50f436f1002dba15da842f4cdb5e 599 PANTHER PTHR23115 400 598 5.4E-278 T 22-04-2016 PP4_RS04240 5003f84e54edd5bcf15bd49e8bb4cd3c 142 PANTHER PTHR37486:SF1 1 142 4.2E-72 T 22-04-2016 PP4_RS04240 5003f84e54edd5bcf15bd49e8bb4cd3c 142 PIRSF PIRSF005276 1 142 1.0E-59 T 22-04-2016 IPR007481 Stringent starvation protein B PP4_RS04240 5003f84e54edd5bcf15bd49e8bb4cd3c 142 SUPERFAMILY SSF101738 1 107 1.57E-47 T 22-04-2016 IPR007481 Stringent starvation protein B PP4_RS04240 5003f84e54edd5bcf15bd49e8bb4cd3c 142 PANTHER PTHR37486 1 142 4.2E-72 T 22-04-2016 PP4_RS04240 5003f84e54edd5bcf15bd49e8bb4cd3c 142 Gene3D G3DSA:2.30.30.220 1 104 2.1E-48 T 22-04-2016 IPR007481 Stringent starvation protein B PP4_RS04240 5003f84e54edd5bcf15bd49e8bb4cd3c 142 Pfam PF04386 Stringent starvation protein B 4 142 1.7E-36 T 22-04-2016 IPR007481 Stringent starvation protein B PP4_RS04840 f6bba4e66700bbd0e277f5f0aad6fda4 444 Pfam PF00158 Sigma-54 interaction domain 145 310 3.7E-64 T 22-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 PP4_RS04840 f6bba4e66700bbd0e277f5f0aad6fda4 444 Gene3D G3DSA:3.40.50.300 143 316 3.8E-52 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS04840 f6bba4e66700bbd0e277f5f0aad6fda4 444 SMART SM00448 3 114 1.0E-35 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS04840 f6bba4e66700bbd0e277f5f0aad6fda4 444 SUPERFAMILY SSF46689 355 435 1.12E-8 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS04840 f6bba4e66700bbd0e277f5f0aad6fda4 444 PANTHER PTHR32071:SF40 1 444 3.0E-250 T 22-04-2016 PP4_RS04840 f6bba4e66700bbd0e277f5f0aad6fda4 444 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 357 366 - T 22-04-2016 IPR025944 Sigma-54 interaction domain, conserved site PP4_RS04840 f6bba4e66700bbd0e277f5f0aad6fda4 444 Pfam PF00072 Response regulator receiver domain 5 113 5.5E-31 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS04840 f6bba4e66700bbd0e277f5f0aad6fda4 444 SUPERFAMILY SSF52540 145 377 3.12E-64 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS04840 f6bba4e66700bbd0e277f5f0aad6fda4 444 SUPERFAMILY SSF52172 4 187 5.27E-45 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS04840 f6bba4e66700bbd0e277f5f0aad6fda4 444 PANTHER PTHR32071 1 444 3.0E-250 T 22-04-2016 PP4_RS04840 f6bba4e66700bbd0e277f5f0aad6fda4 444 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 168 181 - T 22-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 PP4_RS04840 f6bba4e66700bbd0e277f5f0aad6fda4 444 Gene3D G3DSA:1.10.10.60 382 435 5.6E-8 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS04840 f6bba4e66700bbd0e277f5f0aad6fda4 444 Gene3D G3DSA:3.40.50.2300 4 126 9.8E-39 T 22-04-2016 PP4_RS04840 f6bba4e66700bbd0e277f5f0aad6fda4 444 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 230 245 - T 22-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PP4_RS04840 f6bba4e66700bbd0e277f5f0aad6fda4 444 Gene3D G3DSA:1.10.8.60 317 381 5.2E-21 T 22-04-2016 PP4_RS04840 f6bba4e66700bbd0e277f5f0aad6fda4 444 SMART SM00382 164 307 8.3E-9 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS04840 f6bba4e66700bbd0e277f5f0aad6fda4 444 Pfam PF02954 Bacterial regulatory protein, Fis family 393 433 2.4E-7 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS25335 21bb630c9ac239e7e8d19b05d9066761 109 Pfam PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme 33 100 4.2E-14 T 22-04-2016 IPR018660 C-type lysozyme, inhibitor PP4_RS25335 21bb630c9ac239e7e8d19b05d9066761 109 SUPERFAMILY SSF141488 28 107 4.18E-18 T 22-04-2016 IPR018660 C-type lysozyme, inhibitor PP4_RS27190 4d265338699e0835e543a84c963e54be 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 1.5E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS27190 4d265338699e0835e543a84c963e54be 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 1.5E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS27190 4d265338699e0835e543a84c963e54be 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 1.5E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS27190 4d265338699e0835e543a84c963e54be 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 67 1.3E-17 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS27190 4d265338699e0835e543a84c963e54be 313 SUPERFAMILY SSF53850 96 298 7.96E-21 T 22-04-2016 PP4_RS27190 4d265338699e0835e543a84c963e54be 313 Gene3D G3DSA:3.40.190.10 88 195 2.8E-9 T 22-04-2016 PP4_RS27190 4d265338699e0835e543a84c963e54be 313 Gene3D G3DSA:1.10.10.10 8 87 3.1E-27 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS27190 4d265338699e0835e543a84c963e54be 313 PANTHER PTHR30126 5 301 1.7E-134 T 22-04-2016 PP4_RS27190 4d265338699e0835e543a84c963e54be 313 Pfam PF03466 LysR substrate binding domain 93 295 2.4E-25 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS27190 4d265338699e0835e543a84c963e54be 313 SUPERFAMILY SSF46785 8 92 7.49E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS27190 4d265338699e0835e543a84c963e54be 313 Gene3D G3DSA:3.40.190.10 198 265 1.1E-8 T 22-04-2016 PP4_RS27190 4d265338699e0835e543a84c963e54be 313 PANTHER PTHR30126:SF2 5 301 1.7E-134 T 22-04-2016 PP4_RS07525 698ffafe986972d16620ef330d22cd09 647 PANTHER PTHR10342:SF236 274 574 1.8E-69 T 22-04-2016 PP4_RS07525 698ffafe986972d16620ef330d22cd09 647 Pfam PF00884 Sulfatase 276 546 3.1E-42 T 22-04-2016 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 PP4_RS07525 698ffafe986972d16620ef330d22cd09 647 SUPERFAMILY SSF53649 274 590 1.05E-63 T 22-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 PP4_RS07525 698ffafe986972d16620ef330d22cd09 647 Gene3D G3DSA:3.40.720.10 276 559 2.1E-39 T 22-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 PP4_RS07525 698ffafe986972d16620ef330d22cd09 647 PANTHER PTHR10342 274 574 1.8E-69 T 22-04-2016 PP4_RS24700 f7ddf76b422cc7931236dc47f176557f 403 TIGRFAM TIGR02469 CbiT: precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit 230 351 4.1E-34 T 22-04-2016 IPR014008 Cobalamin biosynthesis, precorrin-6Y methyltransferase, CbiT subunit GO:0008276|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.196|MetaCyc: PWY-2201|MetaCyc: PWY-7377|UniPathway: UPA00148 PP4_RS24700 f7ddf76b422cc7931236dc47f176557f 403 PANTHER PTHR14741 180 364 1.5E-50 T 22-04-2016 PP4_RS24700 f7ddf76b422cc7931236dc47f176557f 403 Gene3D G3DSA:3.30.950.10 107 206 3.5E-28 T 22-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 PP4_RS24700 f7ddf76b422cc7931236dc47f176557f 403 Gene3D G3DSA:3.40.50.150 239 380 2.9E-20 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS24700 f7ddf76b422cc7931236dc47f176557f 403 TIGRFAM TIGR02467 CbiE: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit 7 201 5.3E-42 T 22-04-2016 IPR012818 Cobalamin (vitamin B12) biosynthesis CbiE, precorrin-6Y methyltransferase GO:0008276|GO:0009236 PP4_RS24700 f7ddf76b422cc7931236dc47f176557f 403 PANTHER PTHR14741:SF34 180 364 1.5E-50 T 22-04-2016 PP4_RS24700 f7ddf76b422cc7931236dc47f176557f 403 SUPERFAMILY SSF53790 4 204 1.83E-35 T 22-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 PP4_RS24700 f7ddf76b422cc7931236dc47f176557f 403 SUPERFAMILY SSF53335 209 376 1.77E-26 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS24700 f7ddf76b422cc7931236dc47f176557f 403 PIRSF PIRSF036428 1 401 2.9E-141 T 22-04-2016 IPR006365 Cobalamin (vitamin B12) biosynthesis CobL/Precorrin-6Y C(5,15)-methyltransferase GO:0008276|GO:0009236 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|KEGG: 00860+2.1.1.132|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00148 PP4_RS24700 f7ddf76b422cc7931236dc47f176557f 403 Gene3D G3DSA:3.40.1010.10 3 106 4.2E-19 T 22-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 PP4_RS24700 f7ddf76b422cc7931236dc47f176557f 403 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 5 187 1.9E-15 T 22-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 PP4_RS18355 25c15ecc61e215d44f592d8de9038649 234 SUPERFAMILY SSF51735 5 231 1.4E-61 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS18355 25c15ecc61e215d44f592d8de9038649 234 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 127 135 6.9E-5 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS18355 25c15ecc61e215d44f592d8de9038649 234 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 6.9E-5 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS18355 25c15ecc61e215d44f592d8de9038649 234 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 147 166 6.9E-5 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS18355 25c15ecc61e215d44f592d8de9038649 234 PANTHER PTHR24319 4 234 1.3E-33 T 22-04-2016 PP4_RS18355 25c15ecc61e215d44f592d8de9038649 234 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 231 1.4E-45 T 22-04-2016 PP4_RS18355 25c15ecc61e215d44f592d8de9038649 234 Gene3D G3DSA:3.40.50.720 5 231 7.4E-60 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS18355 25c15ecc61e215d44f592d8de9038649 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 1.2E-29 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS18355 25c15ecc61e215d44f592d8de9038649 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 1.2E-29 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS18355 25c15ecc61e215d44f592d8de9038649 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 194 214 1.2E-29 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS18355 25c15ecc61e215d44f592d8de9038649 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 1.2E-29 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS18355 25c15ecc61e215d44f592d8de9038649 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 1.2E-29 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS18355 25c15ecc61e215d44f592d8de9038649 234 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 1.2E-29 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS18355 25c15ecc61e215d44f592d8de9038649 234 PANTHER PTHR24319:SF23 4 234 1.3E-33 T 22-04-2016 PP4_RS11695 772a44f5d13befe3b3f04d2ba4d94b4e 1566 Pfam PF05593 RHS Repeat 761 798 1.6E-6 T 22-04-2016 IPR031325 RHS repeat PP4_RS11695 772a44f5d13befe3b3f04d2ba4d94b4e 1566 Pfam PF05593 RHS Repeat 661 692 3.8E-5 T 22-04-2016 IPR031325 RHS repeat PP4_RS11695 772a44f5d13befe3b3f04d2ba4d94b4e 1566 PANTHER PTHR32305:SF6 372 1049 1.1E-86 T 22-04-2016 PP4_RS11695 772a44f5d13befe3b3f04d2ba4d94b4e 1566 SUPERFAMILY SSF69304 827 1040 5.36E-6 T 22-04-2016 PP4_RS11695 772a44f5d13befe3b3f04d2ba4d94b4e 1566 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 823 863 1.6E-7 T 22-04-2016 IPR006530 YD repeat PP4_RS11695 772a44f5d13befe3b3f04d2ba4d94b4e 1566 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 865 897 5.5E-4 T 22-04-2016 IPR006530 YD repeat PP4_RS11695 772a44f5d13befe3b3f04d2ba4d94b4e 1566 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 660 695 2.3E-4 T 22-04-2016 IPR006530 YD repeat PP4_RS11695 772a44f5d13befe3b3f04d2ba4d94b4e 1566 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 763 802 2.8E-5 T 22-04-2016 IPR006530 YD repeat PP4_RS11695 772a44f5d13befe3b3f04d2ba4d94b4e 1566 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 677 718 5.7E-5 T 22-04-2016 IPR006530 YD repeat PP4_RS11695 772a44f5d13befe3b3f04d2ba4d94b4e 1566 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 719 758 5.2E-4 T 22-04-2016 IPR006530 YD repeat PP4_RS11695 772a44f5d13befe3b3f04d2ba4d94b4e 1566 PANTHER PTHR32305 372 1049 1.1E-86 T 22-04-2016 PP4_RS11695 772a44f5d13befe3b3f04d2ba4d94b4e 1566 PANTHER PTHR32305 1162 1438 1.1E-86 T 22-04-2016 PP4_RS11695 772a44f5d13befe3b3f04d2ba4d94b4e 1566 PRINTS PR00394 RHS protein signature 1323 1343 2.0E-5 T 22-04-2016 IPR001826 RHS protein PP4_RS11695 772a44f5d13befe3b3f04d2ba4d94b4e 1566 PRINTS PR00394 RHS protein signature 1405 1424 2.0E-5 T 22-04-2016 IPR001826 RHS protein PP4_RS11695 772a44f5d13befe3b3f04d2ba4d94b4e 1566 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1356 1437 2.6E-27 T 22-04-2016 IPR022385 Rhs repeat-associated core GO:0097264 PP4_RS11695 772a44f5d13befe3b3f04d2ba4d94b4e 1566 Pfam PF03527 RHS protein 1330 1363 6.7E-15 T 22-04-2016 IPR001826 RHS protein PP4_RS11695 772a44f5d13befe3b3f04d2ba4d94b4e 1566 PANTHER PTHR32305:SF6 1162 1438 1.1E-86 T 22-04-2016 PP4_RS09765 31b6404a88d8f8e4c7d05990b6305d6f 118 PANTHER PTHR30204 11 118 1.5E-32 T 22-04-2016 PP4_RS09765 31b6404a88d8f8e4c7d05990b6305d6f 118 SUPERFAMILY SSF46955 17 112 5.49E-19 T 22-04-2016 IPR009061 Putative DNA-binding domain PP4_RS09765 31b6404a88d8f8e4c7d05990b6305d6f 118 SMART SM00422 19 89 3.9E-9 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS09765 31b6404a88d8f8e4c7d05990b6305d6f 118 Gene3D G3DSA:1.10.1660.10 16 83 2.6E-17 T 22-04-2016 PP4_RS09765 31b6404a88d8f8e4c7d05990b6305d6f 118 Pfam PF13411 MerR HTH family regulatory protein 19 87 1.3E-22 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS09765 31b6404a88d8f8e4c7d05990b6305d6f 118 PANTHER PTHR30204:SF15 11 118 1.5E-32 T 22-04-2016 PP4_RS12590 d719498af4d2772fb608dbefc4d9e73d 218 PANTHER PTHR18901 2 211 1.1E-59 T 22-04-2016 PP4_RS12590 d719498af4d2772fb608dbefc4d9e73d 218 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 83 184 1.9E-15 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PP4_RS12590 d719498af4d2772fb608dbefc4d9e73d 218 PANTHER PTHR18901:SF2 2 211 1.1E-59 T 22-04-2016 PP4_RS12590 d719498af4d2772fb608dbefc4d9e73d 218 Pfam PF13419 Haloacid dehalogenase-like hydrolase 5 184 7.3E-30 T 22-04-2016 IPR023214 HAD-like domain PP4_RS12590 d719498af4d2772fb608dbefc4d9e73d 218 Gene3D G3DSA:1.10.150.240 15 74 2.0E-5 T 22-04-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 PP4_RS12590 d719498af4d2772fb608dbefc4d9e73d 218 SUPERFAMILY SSF56784 1 207 7.73E-49 T 22-04-2016 IPR023214 HAD-like domain PP4_RS12590 d719498af4d2772fb608dbefc4d9e73d 218 Gene3D G3DSA:3.40.50.1000 75 208 3.0E-43 T 22-04-2016 IPR023214 HAD-like domain PP4_RS12590 d719498af4d2772fb608dbefc4d9e73d 218 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 97 110 3.3E-6 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PP4_RS12590 d719498af4d2772fb608dbefc4d9e73d 218 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 128 144 3.3E-6 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PP4_RS12590 d719498af4d2772fb608dbefc4d9e73d 218 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 2 13 3.3E-6 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PP4_RS13175 50063b7566b1e80a18700a2ccbcc48ed 406 SUPERFAMILY SSF53901 8 281 2.0E-81 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS13175 50063b7566b1e80a18700a2ccbcc48ed 406 TIGRFAM TIGR02430 pcaF: 3-oxoadipyl-CoA thiolase 8 406 2.2E-216 T 22-04-2016 IPR012793 Beta-ketoadipyl CoA thiolase GO:0016747|GO:0019619 KEGG: 00250+2.3.1.17|KEGG: 00360+2.3.1.174|KEGG: 00362+2.3.1.174|MetaCyc: PWY-1361|MetaCyc: PWY-2361|MetaCyc: PWY-6185 PP4_RS13175 50063b7566b1e80a18700a2ccbcc48ed 406 ProSitePatterns PS00099 Thiolases active site. 387 400 - T 22-04-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 PP4_RS13175 50063b7566b1e80a18700a2ccbcc48ed 406 ProSitePatterns PS00737 Thiolases signature 2. 352 368 - T 22-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 PP4_RS13175 50063b7566b1e80a18700a2ccbcc48ed 406 Pfam PF00108 Thiolase, N-terminal domain 10 273 5.1E-74 T 22-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 PP4_RS13175 50063b7566b1e80a18700a2ccbcc48ed 406 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 11 404 1.6E-134 T 22-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 PP4_RS13175 50063b7566b1e80a18700a2ccbcc48ed 406 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 91 109 - T 22-04-2016 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Reactome: REACT_22258 PP4_RS13175 50063b7566b1e80a18700a2ccbcc48ed 406 SUPERFAMILY SSF53901 284 405 5.01E-46 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS13175 50063b7566b1e80a18700a2ccbcc48ed 406 Pfam PF02803 Thiolase, C-terminal domain 282 405 8.1E-45 T 22-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 PP4_RS13175 50063b7566b1e80a18700a2ccbcc48ed 406 PANTHER PTHR18919 6 406 6.6E-229 T 22-04-2016 PP4_RS13175 50063b7566b1e80a18700a2ccbcc48ed 406 PIRSF PIRSF000429 4 406 5.8E-133 T 22-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 PP4_RS13175 50063b7566b1e80a18700a2ccbcc48ed 406 Gene3D G3DSA:3.40.47.10 8 130 4.0E-67 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS13175 50063b7566b1e80a18700a2ccbcc48ed 406 Gene3D G3DSA:3.40.47.10 205 287 4.0E-67 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS13175 50063b7566b1e80a18700a2ccbcc48ed 406 PANTHER PTHR18919:SF91 6 406 6.6E-229 T 22-04-2016 PP4_RS13175 50063b7566b1e80a18700a2ccbcc48ed 406 Gene3D G3DSA:3.40.47.10 157 204 9.9E-60 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS13175 50063b7566b1e80a18700a2ccbcc48ed 406 Gene3D G3DSA:3.40.47.10 288 405 9.9E-60 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS14625 d91d4929b1c585899d9a7cb33c6a3250 305 Gene3D G3DSA:3.40.190.10 177 268 1.6E-33 T 22-04-2016 PP4_RS14625 d91d4929b1c585899d9a7cb33c6a3250 305 PANTHER PTHR30346:SF13 1 291 1.5E-145 T 22-04-2016 PP4_RS14625 d91d4929b1c585899d9a7cb33c6a3250 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 8.7E-20 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS14625 d91d4929b1c585899d9a7cb33c6a3250 305 Pfam PF03466 LysR substrate binding domain 90 294 2.7E-42 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS14625 d91d4929b1c585899d9a7cb33c6a3250 305 SUPERFAMILY SSF53850 91 295 1.36E-38 T 22-04-2016 PP4_RS14625 d91d4929b1c585899d9a7cb33c6a3250 305 Gene3D G3DSA:3.40.190.10 91 176 7.0E-16 T 22-04-2016 PP4_RS14625 d91d4929b1c585899d9a7cb33c6a3250 305 PANTHER PTHR30346 1 291 1.5E-145 T 22-04-2016 PP4_RS14625 d91d4929b1c585899d9a7cb33c6a3250 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 3.0E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS14625 d91d4929b1c585899d9a7cb33c6a3250 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 3.0E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS14625 d91d4929b1c585899d9a7cb33c6a3250 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 3.0E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS14625 d91d4929b1c585899d9a7cb33c6a3250 305 Gene3D G3DSA:1.10.10.10 3 81 6.2E-26 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS14625 d91d4929b1c585899d9a7cb33c6a3250 305 SUPERFAMILY SSF46785 3 112 9.54E-26 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS02610 77ff5eb62ac63cda504d02351d26302e 38 Pfam PF00444 Ribosomal protein L36 1 38 5.9E-21 T 22-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02610 77ff5eb62ac63cda504d02351d26302e 38 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 37 - T 22-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02610 77ff5eb62ac63cda504d02351d26302e 38 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 38 18.317 T 22-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02610 77ff5eb62ac63cda504d02351d26302e 38 SUPERFAMILY SSF57840 1 38 3.79E-17 T 22-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02610 77ff5eb62ac63cda504d02351d26302e 38 ProDom PD002101 RIBOSOMAL L36 RIBONUCLEOPROTEIN 50S CHLOROPLAST PLASTID B SUBUNIT DIRECT SEQUENCING 9 38 4.0E-10 T 22-04-2016 PP4_RS02610 77ff5eb62ac63cda504d02351d26302e 38 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 38 3.3E-22 T 22-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02610 77ff5eb62ac63cda504d02351d26302e 38 PANTHER PTHR18804 1 38 1.1E-19 T 22-04-2016 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS04255 77d4e5f5fadbd1ceaccafec6932f9a2f 197 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 2 192 37.442 T 22-04-2016 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478|UniPathway: UPA00041 PP4_RS04255 77d4e5f5fadbd1ceaccafec6932f9a2f 197 PANTHER PTHR30390:SF5 3 197 4.8E-120 T 22-04-2016 PP4_RS04255 77d4e5f5fadbd1ceaccafec6932f9a2f 197 Pfam PF13580 SIS domain 17 146 2.0E-36 T 22-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 PP4_RS04255 77d4e5f5fadbd1ceaccafec6932f9a2f 197 PANTHER PTHR30390 3 197 4.8E-120 T 22-04-2016 PP4_RS04255 77d4e5f5fadbd1ceaccafec6932f9a2f 197 SUPERFAMILY SSF53697 2 193 2.43E-57 T 22-04-2016 PP4_RS04255 77d4e5f5fadbd1ceaccafec6932f9a2f 197 Gene3D G3DSA:3.40.50.10490 2 194 6.4E-62 T 22-04-2016 PP4_RS03660 e1314623b091dca72f583e8361554170 121 Gene3D G3DSA:2.40.10.220 2 121 3.6E-43 T 22-04-2016 PP4_RS03660 e1314623b091dca72f583e8361554170 121 Pfam PF07238 PilZ domain 6 103 2.1E-11 T 22-04-2016 IPR009875 PilZ domain GO:0035438 PP4_RS03660 e1314623b091dca72f583e8361554170 121 PIRSF PIRSF028141 3 121 3.1E-44 T 22-04-2016 IPR027021 Cyclic di-GMP binding protein, PA4608 type PP4_RS03660 e1314623b091dca72f583e8361554170 121 SUPERFAMILY SSF141371 2 121 1.2E-34 T 22-04-2016 PP4_RS11530 7b37e907c60e8fea63853ab11f75c224 282 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 270 1.4E-26 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS11530 7b37e907c60e8fea63853ab11f75c224 282 PANTHER PTHR30177:SF10 9 279 6.6E-112 T 22-04-2016 PP4_RS11530 7b37e907c60e8fea63853ab11f75c224 282 SUPERFAMILY SSF161098 91 274 6.8E-42 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS11530 7b37e907c60e8fea63853ab11f75c224 282 Gene3D G3DSA:1.10.3720.10 55 271 3.3E-42 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS11530 7b37e907c60e8fea63853ab11f75c224 282 PANTHER PTHR30177 9 279 6.6E-112 T 22-04-2016 PP4_RS02530 d9dac43286d48fa21d0b5cdb26095755 110 Gene3D G3DSA:3.90.470.10 1 109 3.1E-42 T 22-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 PP4_RS02530 d9dac43286d48fa21d0b5cdb26095755 110 Pfam PF00237 Ribosomal protein L22p/L17e 9 107 1.0E-33 T 22-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 PP4_RS02530 d9dac43286d48fa21d0b5cdb26095755 110 PANTHER PTHR13501 1 109 6.7E-50 T 22-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 PP4_RS02530 d9dac43286d48fa21d0b5cdb26095755 110 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 8.9E-45 T 22-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 PP4_RS02530 d9dac43286d48fa21d0b5cdb26095755 110 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 110 27.804 T 22-04-2016 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 PP4_RS02530 d9dac43286d48fa21d0b5cdb26095755 110 SUPERFAMILY SSF54843 1 109 6.8E-42 T 22-04-2016 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 PP4_RS02530 d9dac43286d48fa21d0b5cdb26095755 110 ProSitePatterns PS00464 Ribosomal protein L22 signature. 83 107 - T 22-04-2016 IPR018260 Ribosomal protein L22/L17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS25965 35d395a8f4e9cd859eba4d41336f3b56 71 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 66 2.3E-33 T 22-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS25965 35d395a8f4e9cd859eba4d41336f3b56 71 Pfam PF01197 Ribosomal protein L31 1 65 5.3E-30 T 22-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS25965 35d395a8f4e9cd859eba4d41336f3b56 71 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 68 27.887 T 22-04-2016 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS25965 35d395a8f4e9cd859eba4d41336f3b56 71 PRINTS PR01249 Ribosomal protein L31 signature 2 19 2.3E-20 T 22-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS25965 35d395a8f4e9cd859eba4d41336f3b56 71 PRINTS PR01249 Ribosomal protein L31 signature 31 46 2.3E-20 T 22-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS25965 35d395a8f4e9cd859eba4d41336f3b56 71 PRINTS PR01249 Ribosomal protein L31 signature 46 64 2.3E-20 T 22-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS25965 35d395a8f4e9cd859eba4d41336f3b56 71 PANTHER PTHR33280 1 67 1.2E-32 T 22-04-2016 PP4_RS25965 35d395a8f4e9cd859eba4d41336f3b56 71 PANTHER PTHR33280:SF2 1 67 1.2E-32 T 22-04-2016 PP4_RS25965 35d395a8f4e9cd859eba4d41336f3b56 71 SUPERFAMILY SSF143800 1 68 6.28E-27 T 22-04-2016 PP4_RS25965 35d395a8f4e9cd859eba4d41336f3b56 71 ProSitePatterns PS01143 Ribosomal protein L31 signature. 35 56 - T 22-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS21730 904044839d1191bd3b0b953627536e10 420 TIGRFAM TIGR01078 arcA: arginine deiminase 10 418 2.3E-165 T 22-04-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981|UniPathway: UPA00254 PP4_RS21730 904044839d1191bd3b0b953627536e10 420 Hamap MF_00242 Arginine deiminase [arcA]. 5 418 47.885 T 22-04-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981|UniPathway: UPA00254 PP4_RS21730 904044839d1191bd3b0b953627536e10 420 Pfam PF02274 Amidinotransferase 22 415 2.4E-98 T 22-04-2016 PP4_RS21730 904044839d1191bd3b0b953627536e10 420 SUPERFAMILY SSF55909 7 418 4.82E-139 T 22-04-2016 PP4_RS21730 904044839d1191bd3b0b953627536e10 420 PANTHER PTHR12737 157 299 4.2E-130 T 22-04-2016 IPR033199 Dimethylarginine dimethylaminohydrolase/arginine deiminase KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981|UniPathway: UPA00254 PP4_RS21730 904044839d1191bd3b0b953627536e10 420 PANTHER PTHR12737 2 95 4.2E-130 T 22-04-2016 IPR033199 Dimethylarginine dimethylaminohydrolase/arginine deiminase KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981|UniPathway: UPA00254 PP4_RS21730 904044839d1191bd3b0b953627536e10 420 PANTHER PTHR12737 322 420 4.2E-130 T 22-04-2016 IPR033199 Dimethylarginine dimethylaminohydrolase/arginine deiminase KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981|UniPathway: UPA00254 PP4_RS21730 904044839d1191bd3b0b953627536e10 420 PANTHER PTHR12737:SF13 157 299 4.2E-130 T 22-04-2016 PP4_RS21730 904044839d1191bd3b0b953627536e10 420 PANTHER PTHR12737:SF13 2 95 4.2E-130 T 22-04-2016 PP4_RS21730 904044839d1191bd3b0b953627536e10 420 PANTHER PTHR12737:SF13 322 420 4.2E-130 T 22-04-2016 PP4_RS21730 904044839d1191bd3b0b953627536e10 420 PRINTS PR01466 Bacterial arginine deiminase signature 397 415 1.7E-50 T 22-04-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981|UniPathway: UPA00254 PP4_RS21730 904044839d1191bd3b0b953627536e10 420 PRINTS PR01466 Bacterial arginine deiminase signature 157 175 1.7E-50 T 22-04-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981|UniPathway: UPA00254 PP4_RS21730 904044839d1191bd3b0b953627536e10 420 PRINTS PR01466 Bacterial arginine deiminase signature 354 371 1.7E-50 T 22-04-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981|UniPathway: UPA00254 PP4_RS21730 904044839d1191bd3b0b953627536e10 420 PRINTS PR01466 Bacterial arginine deiminase signature 374 388 1.7E-50 T 22-04-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981|UniPathway: UPA00254 PP4_RS21730 904044839d1191bd3b0b953627536e10 420 PRINTS PR01466 Bacterial arginine deiminase signature 185 200 1.7E-50 T 22-04-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981|UniPathway: UPA00254 PP4_RS21730 904044839d1191bd3b0b953627536e10 420 PRINTS PR01466 Bacterial arginine deiminase signature 6 26 1.7E-50 T 22-04-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981|UniPathway: UPA00254 PP4_RS21730 904044839d1191bd3b0b953627536e10 420 Gene3D G3DSA:3.75.10.10 157 419 4.0E-130 T 22-04-2016 PP4_RS21730 904044839d1191bd3b0b953627536e10 420 Gene3D G3DSA:3.75.10.10 4 71 4.0E-130 T 22-04-2016 PP4_RS21730 904044839d1191bd3b0b953627536e10 420 PIRSF PIRSF006356 1 418 5.6E-154 T 22-04-2016 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981|UniPathway: UPA00254 PP4_RS10660 6532b11d0abeac8ecb46e592cacbaa16 535 SUPERFAMILY SSF52518 3 184 2.45E-52 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS10660 6532b11d0abeac8ecb46e592cacbaa16 535 Gene3D G3DSA:3.40.50.970 5 184 5.4E-60 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS10660 6532b11d0abeac8ecb46e592cacbaa16 535 PANTHER PTHR18968 5 532 1.1E-161 T 22-04-2016 PP4_RS10660 6532b11d0abeac8ecb46e592cacbaa16 535 Gene3D G3DSA:3.40.50.1220 190 374 4.8E-38 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain PP4_RS10660 6532b11d0abeac8ecb46e592cacbaa16 535 SUPERFAMILY SSF52467 160 337 5.32E-35 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain PP4_RS10660 6532b11d0abeac8ecb46e592cacbaa16 535 Gene3D G3DSA:3.40.50.970 375 530 2.5E-40 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS10660 6532b11d0abeac8ecb46e592cacbaa16 535 PANTHER PTHR18968:SF13 5 532 1.1E-161 T 22-04-2016 PP4_RS10660 6532b11d0abeac8ecb46e592cacbaa16 535 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 197 325 5.6E-24 T 22-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 PP4_RS10660 6532b11d0abeac8ecb46e592cacbaa16 535 SUPERFAMILY SSF52518 361 533 2.85E-41 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS10660 6532b11d0abeac8ecb46e592cacbaa16 535 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 390 528 1.3E-25 T 22-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 PP4_RS10660 6532b11d0abeac8ecb46e592cacbaa16 535 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 7 175 8.5E-54 T 22-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 PP4_RS10955 a096eeb6b415951eb4c46b5a68b05f03 802 TIGRFAM TIGR03074 PQQ_membr_DH: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family 10 798 9.7E-302 T 22-04-2016 IPR017511 PQQ-dependent membrane bound dehydrogenase, glucose/quinate/shikimate-related GO:0016021|GO:0016614|GO:0048038|GO:0055114 PP4_RS10955 a096eeb6b415951eb4c46b5a68b05f03 802 SUPERFAMILY SSF50998 161 529 1.7E-132 T 22-04-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily PP4_RS10955 a096eeb6b415951eb4c46b5a68b05f03 802 SUPERFAMILY SSF50998 564 798 1.7E-132 T 22-04-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily PP4_RS10955 a096eeb6b415951eb4c46b5a68b05f03 802 Gene3D G3DSA:2.140.10.10 155 541 1.3E-131 T 22-04-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain PP4_RS10955 a096eeb6b415951eb4c46b5a68b05f03 802 Gene3D G3DSA:2.140.10.10 575 799 1.3E-131 T 22-04-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain PP4_RS10955 a096eeb6b415951eb4c46b5a68b05f03 802 PANTHER PTHR32303:SF4 584 798 8.7E-138 T 22-04-2016 PP4_RS10955 a096eeb6b415951eb4c46b5a68b05f03 802 PANTHER PTHR32303:SF4 127 258 8.7E-138 T 22-04-2016 PP4_RS10955 a096eeb6b415951eb4c46b5a68b05f03 802 PANTHER PTHR32303:SF4 281 515 8.7E-138 T 22-04-2016 PP4_RS10955 a096eeb6b415951eb4c46b5a68b05f03 802 Pfam PF13360 PQQ-like domain 673 778 1.7E-4 T 22-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat PP4_RS10955 a096eeb6b415951eb4c46b5a68b05f03 802 PANTHER PTHR32303 584 798 8.7E-138 T 22-04-2016 PP4_RS10955 a096eeb6b415951eb4c46b5a68b05f03 802 PANTHER PTHR32303 127 258 8.7E-138 T 22-04-2016 PP4_RS10955 a096eeb6b415951eb4c46b5a68b05f03 802 PANTHER PTHR32303 281 515 8.7E-138 T 22-04-2016 PP4_RS10955 a096eeb6b415951eb4c46b5a68b05f03 802 SMART SM00564 651 690 260.0 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS10955 a096eeb6b415951eb4c46b5a68b05f03 802 SMART SM00564 214 245 0.0019 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS10955 a096eeb6b415951eb4c46b5a68b05f03 802 SMART SM00564 346 387 30.0 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS10955 a096eeb6b415951eb4c46b5a68b05f03 802 SMART SM00564 718 751 0.0074 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS10955 a096eeb6b415951eb4c46b5a68b05f03 802 SMART SM00564 415 465 340.0 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS10955 a096eeb6b415951eb4c46b5a68b05f03 802 Pfam PF01011 PQQ enzyme repeat 219 246 6.1E-5 T 22-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat PP4_RS21865 8e2e1da49fd81d236c998237c21240b0 441 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 11 434 40.881 T 22-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 PP4_RS21865 8e2e1da49fd81d236c998237c21240b0 441 ProSitePatterns PS00611 Histidinol dehydrogenase signature. 236 268 - T 22-04-2016 IPR001692 Histidinol dehydrogenase, conserved site GO:0000105|GO:0004399|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 PP4_RS21865 8e2e1da49fd81d236c998237c21240b0 441 PANTHER PTHR21256 6 440 1.9E-206 T 22-04-2016 PP4_RS21865 8e2e1da49fd81d236c998237c21240b0 441 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 39 433 5.3E-162 T 22-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 PP4_RS21865 8e2e1da49fd81d236c998237c21240b0 441 Gene3D G3DSA:3.40.50.1980 33 246 1.0E-79 T 22-04-2016 PP4_RS21865 8e2e1da49fd81d236c998237c21240b0 441 PIRSF PIRSF000099 6 436 3.2E-161 T 22-04-2016 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 PP4_RS21865 8e2e1da49fd81d236c998237c21240b0 441 SUPERFAMILY SSF53720 33 434 1.24E-88 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS21865 8e2e1da49fd81d236c998237c21240b0 441 PRINTS PR00083 Histidinol dehydrogenase signature 327 352 1.7E-88 T 22-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 PP4_RS21865 8e2e1da49fd81d236c998237c21240b0 441 PRINTS PR00083 Histidinol dehydrogenase signature 258 277 1.7E-88 T 22-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 PP4_RS21865 8e2e1da49fd81d236c998237c21240b0 441 PRINTS PR00083 Histidinol dehydrogenase signature 236 257 1.7E-88 T 22-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 PP4_RS21865 8e2e1da49fd81d236c998237c21240b0 441 PRINTS PR00083 Histidinol dehydrogenase signature 39 63 1.7E-88 T 22-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 PP4_RS21865 8e2e1da49fd81d236c998237c21240b0 441 PRINTS PR00083 Histidinol dehydrogenase signature 368 386 1.7E-88 T 22-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 PP4_RS21865 8e2e1da49fd81d236c998237c21240b0 441 PRINTS PR00083 Histidinol dehydrogenase signature 207 232 1.7E-88 T 22-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 PP4_RS21865 8e2e1da49fd81d236c998237c21240b0 441 PRINTS PR00083 Histidinol dehydrogenase signature 177 203 1.7E-88 T 22-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 PP4_RS21865 8e2e1da49fd81d236c998237c21240b0 441 PRINTS PR00083 Histidinol dehydrogenase signature 143 169 1.7E-88 T 22-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 PP4_RS21865 8e2e1da49fd81d236c998237c21240b0 441 Pfam PF00815 Histidinol dehydrogenase 30 433 2.1E-169 T 22-04-2016 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23|UniPathway: UPA00031 PP4_RS24920 c9e2bd643324850806057d3f17d53a8c 148 Gene3D G3DSA:3.10.430.100 61 147 2.6E-29 T 22-04-2016 IPR020069 Ribosomal protein L9, C-terminal PP4_RS24920 c9e2bd643324850806057d3f17d53a8c 148 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 47 1.2E-18 T 22-04-2016 IPR020070 Ribosomal protein L9, N-terminal PP4_RS24920 c9e2bd643324850806057d3f17d53a8c 148 Gene3D G3DSA:3.40.5.10 1 52 9.4E-23 T 22-04-2016 IPR020070 Ribosomal protein L9, N-terminal PP4_RS24920 c9e2bd643324850806057d3f17d53a8c 148 PANTHER PTHR21368 1 147 1.9E-50 T 22-04-2016 IPR000244 Ribosomal protein L9 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS24920 c9e2bd643324850806057d3f17d53a8c 148 Pfam PF03948 Ribosomal protein L9, C-terminal domain 64 147 2.4E-27 T 22-04-2016 IPR020069 Ribosomal protein L9, C-terminal PP4_RS24920 c9e2bd643324850806057d3f17d53a8c 148 SUPERFAMILY SSF55658 1 56 2.09E-16 T 22-04-2016 IPR009027 Ribosomal protein L9/RNase H1, N-terminal PP4_RS24920 c9e2bd643324850806057d3f17d53a8c 148 ProSitePatterns PS00651 Ribosomal protein L9 signature. 13 40 - T 22-04-2016 IPR020070 Ribosomal protein L9, N-terminal PP4_RS24920 c9e2bd643324850806057d3f17d53a8c 148 SUPERFAMILY SSF55653 61 147 1.06E-25 T 22-04-2016 IPR020069 Ribosomal protein L9, C-terminal PP4_RS24920 c9e2bd643324850806057d3f17d53a8c 148 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 147 2.7E-47 T 22-04-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS24920 c9e2bd643324850806057d3f17d53a8c 148 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 148 24.995 T 22-04-2016 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS04945 7a174a5f9008e1047ddca567c34f7dbe 268 PANTHER PTHR33525 4 226 2.1E-69 T 22-04-2016 PP4_RS04945 7a174a5f9008e1047ddca567c34f7dbe 268 Pfam PF08668 HDOD domain 23 203 1.5E-42 T 22-04-2016 IPR013976 Metal-dependent hydrolase HDOD PP4_RS04945 7a174a5f9008e1047ddca567c34f7dbe 268 PANTHER PTHR33525:SF2 4 226 2.1E-69 T 22-04-2016 PP4_RS04945 7a174a5f9008e1047ddca567c34f7dbe 268 SUPERFAMILY SSF109604 11 251 9.57E-50 T 22-04-2016 PP4_RS04945 7a174a5f9008e1047ddca567c34f7dbe 268 Gene3D G3DSA:1.10.3150.10 3 250 3.7E-57 T 22-04-2016 IPR013976 Metal-dependent hydrolase HDOD PP4_RS23780 f2bd994900a00d8fa139e38851fc2289 144 PANTHER PTHR12901 3 142 3.1E-69 T 22-04-2016 PP4_RS23780 f2bd994900a00d8fa139e38851fc2289 144 SUPERFAMILY SSF55961 1 143 6.49E-34 T 22-04-2016 PP4_RS23780 f2bd994900a00d8fa139e38851fc2289 144 PANTHER PTHR12901:SF7 3 142 3.1E-69 T 22-04-2016 PP4_RS23780 f2bd994900a00d8fa139e38851fc2289 144 Pfam PF03364 Polyketide cyclase / dehydrase and lipid transport 11 135 2.5E-33 T 22-04-2016 IPR005031 Coenzyme Q-binding protein COQ10, START domain PP4_RS23780 f2bd994900a00d8fa139e38851fc2289 144 Gene3D G3DSA:3.30.530.20 4 143 1.5E-45 T 22-04-2016 IPR023393 START-like domain PP4_RS18610 0aabe0c5d5b39c4263eedaf3de733afd 464 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 344 455 2.7E-29 T 22-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 PP4_RS18610 0aabe0c5d5b39c4263eedaf3de733afd 464 Gene3D G3DSA:3.50.50.60 143 333 5.1E-51 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS18610 0aabe0c5d5b39c4263eedaf3de733afd 464 SUPERFAMILY SSF55424 343 461 3.09E-29 T 22-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 PP4_RS18610 0aabe0c5d5b39c4263eedaf3de733afd 464 PANTHER PTHR22912 4 459 1.2E-254 T 22-04-2016 PP4_RS18610 0aabe0c5d5b39c4263eedaf3de733afd 464 Gene3D G3DSA:3.50.50.60 5 142 8.5E-32 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS18610 0aabe0c5d5b39c4263eedaf3de733afd 464 SUPERFAMILY SSF51905 4 322 8.36E-58 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS18610 0aabe0c5d5b39c4263eedaf3de733afd 464 PIRSF PIRSF000350 2 459 3.5E-66 T 22-04-2016 PP4_RS18610 0aabe0c5d5b39c4263eedaf3de733afd 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 5.8E-32 T 22-04-2016 PP4_RS18610 0aabe0c5d5b39c4263eedaf3de733afd 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 290 312 5.8E-32 T 22-04-2016 PP4_RS18610 0aabe0c5d5b39c4263eedaf3de733afd 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 177 195 5.8E-32 T 22-04-2016 PP4_RS18610 0aabe0c5d5b39c4263eedaf3de733afd 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 138 156 5.8E-32 T 22-04-2016 PP4_RS18610 0aabe0c5d5b39c4263eedaf3de733afd 464 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 261 277 5.8E-32 T 22-04-2016 PP4_RS18610 0aabe0c5d5b39c4263eedaf3de733afd 464 Hamap MF_00247 Soluble pyridine nucleotide transhydrogenase [sthA]. 1 464 72.251 T 22-04-2016 IPR022962 Soluble pyridine nucleotide transhydrogenase GO:0003957|GO:0055114 KEGG: 00760+1.6.1.1|MetaCyc: PWY-5083 PP4_RS18610 0aabe0c5d5b39c4263eedaf3de733afd 464 Gene3D G3DSA:3.30.390.30 343 457 1.0E-30 T 22-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 PP4_RS18610 0aabe0c5d5b39c4263eedaf3de733afd 464 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 325 3.9E-66 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS18610 0aabe0c5d5b39c4263eedaf3de733afd 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 40 55 1.8E-50 T 22-04-2016 PP4_RS18610 0aabe0c5d5b39c4263eedaf3de733afd 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 305 312 1.8E-50 T 22-04-2016 PP4_RS18610 0aabe0c5d5b39c4263eedaf3de733afd 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 262 276 1.8E-50 T 22-04-2016 PP4_RS18610 0aabe0c5d5b39c4263eedaf3de733afd 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 1.8E-50 T 22-04-2016 PP4_RS18610 0aabe0c5d5b39c4263eedaf3de733afd 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 340 361 1.8E-50 T 22-04-2016 PP4_RS18610 0aabe0c5d5b39c4263eedaf3de733afd 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 430 450 1.8E-50 T 22-04-2016 PP4_RS18610 0aabe0c5d5b39c4263eedaf3de733afd 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 141 150 1.8E-50 T 22-04-2016 PP4_RS18610 0aabe0c5d5b39c4263eedaf3de733afd 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 405 420 1.8E-50 T 22-04-2016 PP4_RS18610 0aabe0c5d5b39c4263eedaf3de733afd 464 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 177 202 1.8E-50 T 22-04-2016 PP4_RS18610 0aabe0c5d5b39c4263eedaf3de733afd 464 PANTHER PTHR22912:SF93 4 459 1.2E-254 T 22-04-2016 PP4_RS06510 654bc01314ce83a121821702b086c397 1301 SMART SM00847 469 559 2.1E-35 T 22-04-2016 IPR007502 Helicase-associated domain GO:0004386 PP4_RS06510 654bc01314ce83a121821702b086c397 1301 Pfam PF04408 Helicase associated domain (HA2) 472 557 8.2E-18 T 22-04-2016 IPR007502 Helicase-associated domain GO:0004386 PP4_RS06510 654bc01314ce83a121821702b086c397 1301 SMART SM00487 67 252 2.6E-26 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PP4_RS06510 654bc01314ce83a121821702b086c397 1301 Pfam PF11898 Domain of unknown function (DUF3418) 711 1298 1.1E-195 T 22-04-2016 IPR024590 RNA helicase HrpA, C-terminal PP4_RS06510 654bc01314ce83a121821702b086c397 1301 PANTHER PTHR18934 738 866 0.0 T 22-04-2016 PP4_RS06510 654bc01314ce83a121821702b086c397 1301 PANTHER PTHR18934 69 703 0.0 T 22-04-2016 PP4_RS06510 654bc01314ce83a121821702b086c397 1301 TIGRFAM TIGR01967 DEAH_box_HrpA: RNA helicase HrpA 10 1298 0.0 T 22-04-2016 IPR010222 RNA helicase HrpA GO:0004004 PP4_RS06510 654bc01314ce83a121821702b086c397 1301 SMART SM00382 85 375 1.3E-5 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS06510 654bc01314ce83a121821702b086c397 1301 SUPERFAMILY SSF52540 71 589 1.84E-105 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS06510 654bc01314ce83a121821702b086c397 1301 PANTHER PTHR18934:SF109 738 866 0.0 T 22-04-2016 PP4_RS06510 654bc01314ce83a121821702b086c397 1301 PANTHER PTHR18934:SF109 69 703 0.0 T 22-04-2016 PP4_RS06510 654bc01314ce83a121821702b086c397 1301 Pfam PF00271 Helicase conserved C-terminal domain 291 408 5.0E-11 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS06510 654bc01314ce83a121821702b086c397 1301 SMART SM00490 309 409 1.3E-14 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS06510 654bc01314ce83a121821702b086c397 1301 Gene3D G3DSA:3.40.50.300 286 422 1.3E-12 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS06510 654bc01314ce83a121821702b086c397 1301 Pfam PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold 576 698 1.6E-20 T 22-04-2016 IPR011709 Domain of unknown function DUF1605 PP4_RS06510 654bc01314ce83a121821702b086c397 1301 Gene3D G3DSA:3.40.50.300 70 226 1.5E-48 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS24795 be5a94a508edacc778f5d2d066cf0a36 423 Pfam PF00012 Hsp70 protein 10 86 7.2E-5 T 22-04-2016 IPR013126 Heat shock protein 70 family PP4_RS24795 be5a94a508edacc778f5d2d066cf0a36 423 Pfam PF00012 Hsp70 protein 100 230 1.2E-9 T 22-04-2016 IPR013126 Heat shock protein 70 family PP4_RS24795 be5a94a508edacc778f5d2d066cf0a36 423 Pfam PF00012 Hsp70 protein 299 395 7.8E-12 T 22-04-2016 IPR013126 Heat shock protein 70 family PP4_RS24795 be5a94a508edacc778f5d2d066cf0a36 423 Gene3D G3DSA:3.30.420.40 186 225 1.5E-15 T 22-04-2016 PP4_RS24795 be5a94a508edacc778f5d2d066cf0a36 423 Gene3D G3DSA:3.30.420.40 356 396 1.5E-15 T 22-04-2016 PP4_RS24795 be5a94a508edacc778f5d2d066cf0a36 423 PANTHER PTHR19375 290 414 1.7E-118 T 22-04-2016 PP4_RS24795 be5a94a508edacc778f5d2d066cf0a36 423 PANTHER PTHR19375 7 240 1.7E-118 T 22-04-2016 PP4_RS24795 be5a94a508edacc778f5d2d066cf0a36 423 Gene3D G3DSA:3.30.420.40 105 185 5.8E-30 T 22-04-2016 PP4_RS24795 be5a94a508edacc778f5d2d066cf0a36 423 Gene3D G3DSA:3.30.420.40 9 72 5.8E-30 T 22-04-2016 PP4_RS24795 be5a94a508edacc778f5d2d066cf0a36 423 SUPERFAMILY SSF53067 9 175 3.02E-30 T 22-04-2016 PP4_RS24795 be5a94a508edacc778f5d2d066cf0a36 423 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 184 197 - T 22-04-2016 IPR018181 Heat shock protein 70, conserved site PP4_RS24795 be5a94a508edacc778f5d2d066cf0a36 423 PRINTS PR00301 70kDa heat shock protein signature 190 200 6.3E-7 T 22-04-2016 IPR013126 Heat shock protein 70 family PP4_RS24795 be5a94a508edacc778f5d2d066cf0a36 423 PRINTS PR00301 70kDa heat shock protein signature 8 21 6.3E-7 T 22-04-2016 IPR013126 Heat shock protein 70 family PP4_RS24795 be5a94a508edacc778f5d2d066cf0a36 423 PRINTS PR00301 70kDa heat shock protein signature 124 144 6.3E-7 T 22-04-2016 IPR013126 Heat shock protein 70 family PP4_RS24795 be5a94a508edacc778f5d2d066cf0a36 423 PRINTS PR00301 70kDa heat shock protein signature 36 48 6.3E-7 T 22-04-2016 IPR013126 Heat shock protein 70 family PP4_RS24795 be5a94a508edacc778f5d2d066cf0a36 423 SUPERFAMILY SSF53067 179 247 2.81E-35 T 22-04-2016 PP4_RS24795 be5a94a508edacc778f5d2d066cf0a36 423 SUPERFAMILY SSF53067 296 416 2.81E-35 T 22-04-2016 PP4_RS24795 be5a94a508edacc778f5d2d066cf0a36 423 PANTHER PTHR19375:SF182 290 414 1.7E-118 T 22-04-2016 PP4_RS24795 be5a94a508edacc778f5d2d066cf0a36 423 PANTHER PTHR19375:SF182 7 240 1.7E-118 T 22-04-2016 PP4_RS11650 d5dd81dc03d129d826d80c952d5cafb8 596 SUPERFAMILY SSF56235 38 595 3.47E-160 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PP4_RS11650 d5dd81dc03d129d826d80c952d5cafb8 596 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 291 310 1.9E-67 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PP4_RS11650 d5dd81dc03d129d826d80c952d5cafb8 596 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 161 180 1.9E-67 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PP4_RS11650 d5dd81dc03d129d826d80c952d5cafb8 596 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 261 277 1.9E-67 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PP4_RS11650 d5dd81dc03d129d826d80c952d5cafb8 596 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 499 516 1.9E-67 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PP4_RS11650 d5dd81dc03d129d826d80c952d5cafb8 596 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 143 161 1.9E-67 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PP4_RS11650 d5dd81dc03d129d826d80c952d5cafb8 596 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 70 95 1.9E-67 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PP4_RS11650 d5dd81dc03d129d826d80c952d5cafb8 596 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 473 488 1.9E-67 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PP4_RS11650 d5dd81dc03d129d826d80c952d5cafb8 596 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 415 433 1.9E-67 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PP4_RS11650 d5dd81dc03d129d826d80c952d5cafb8 596 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 437 455 1.9E-67 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PP4_RS11650 d5dd81dc03d129d826d80c952d5cafb8 596 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 49 588 1.9E-113 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PP4_RS11650 d5dd81dc03d129d826d80c952d5cafb8 596 PANTHER PTHR11686:SF27 28 595 2.5E-185 T 22-04-2016 PP4_RS11650 d5dd81dc03d129d826d80c952d5cafb8 596 PANTHER PTHR11686 28 595 2.5E-185 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PP4_RS11650 d5dd81dc03d129d826d80c952d5cafb8 596 Pfam PF01019 Gamma-glutamyltranspeptidase 63 591 4.6E-147 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PP4_RS00570 24b17b5c9c8405dfdb58f9ed95411de7 915 Gene3D G3DSA:3.30.70.370 806 915 1.1E-70 T 22-04-2016 PP4_RS00570 24b17b5c9c8405dfdb58f9ed95411de7 915 Gene3D G3DSA:3.30.70.370 651 698 1.1E-70 T 22-04-2016 PP4_RS00570 24b17b5c9c8405dfdb58f9ed95411de7 915 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 168 270 1.8E-27 T 22-04-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 PP4_RS00570 24b17b5c9c8405dfdb58f9ed95411de7 915 Gene3D G3DSA:3.40.50.1010 5 182 1.1E-66 T 22-04-2016 IPR029060 PIN domain-like PP4_RS00570 24b17b5c9c8405dfdb58f9ed95411de7 915 SMART SM00482 673 879 3.7E-117 T 22-04-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS00570 24b17b5c9c8405dfdb58f9ed95411de7 915 Gene3D G3DSA:3.30.420.10 311 528 3.2E-83 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PP4_RS00570 24b17b5c9c8405dfdb58f9ed95411de7 915 Pfam PF01612 3'-5' exonuclease 314 502 1.8E-38 T 22-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 PP4_RS00570 24b17b5c9c8405dfdb58f9ed95411de7 915 Gene3D G3DSA:1.10.150.20 183 251 8.4E-24 T 22-04-2016 PP4_RS00570 24b17b5c9c8405dfdb58f9ed95411de7 915 SUPERFAMILY SSF47807 168 289 4.93E-30 T 22-04-2016 IPR020045 5'-3' exonuclease, C-terminal domain GO:0003677|GO:0003824 PP4_RS00570 24b17b5c9c8405dfdb58f9ed95411de7 915 PRINTS PR00868 DNA-polymerase family A (pol I) signature 717 730 8.5E-78 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS00570 24b17b5c9c8405dfdb58f9ed95411de7 915 PRINTS PR00868 DNA-polymerase family A (pol I) signature 687 710 8.5E-78 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS00570 24b17b5c9c8405dfdb58f9ed95411de7 915 PRINTS PR00868 DNA-polymerase family A (pol I) signature 862 875 8.5E-78 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS00570 24b17b5c9c8405dfdb58f9ed95411de7 915 PRINTS PR00868 DNA-polymerase family A (pol I) signature 832 848 8.5E-78 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS00570 24b17b5c9c8405dfdb58f9ed95411de7 915 PRINTS PR00868 DNA-polymerase family A (pol I) signature 642 664 8.5E-78 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS00570 24b17b5c9c8405dfdb58f9ed95411de7 915 PRINTS PR00868 DNA-polymerase family A (pol I) signature 778 789 8.5E-78 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS00570 24b17b5c9c8405dfdb58f9ed95411de7 915 PRINTS PR00868 DNA-polymerase family A (pol I) signature 665 680 8.5E-78 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS00570 24b17b5c9c8405dfdb58f9ed95411de7 915 PRINTS PR00868 DNA-polymerase family A (pol I) signature 741 766 8.5E-78 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS00570 24b17b5c9c8405dfdb58f9ed95411de7 915 PRINTS PR00868 DNA-polymerase family A (pol I) signature 800 811 8.5E-78 T 22-04-2016 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS00570 24b17b5c9c8405dfdb58f9ed95411de7 915 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 6 167 1.5E-49 T 22-04-2016 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 PP4_RS00570 24b17b5c9c8405dfdb58f9ed95411de7 915 Gene3D G3DSA:1.20.1060.10 529 650 2.7E-33 T 22-04-2016 PP4_RS00570 24b17b5c9c8405dfdb58f9ed95411de7 915 TIGRFAM TIGR00593 pola: DNA polymerase I 6 915 1.8E-279 T 22-04-2016 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS00570 24b17b5c9c8405dfdb58f9ed95411de7 915 PANTHER PTHR10133 1 914 0.0 T 22-04-2016 PP4_RS00570 24b17b5c9c8405dfdb58f9ed95411de7 915 SMART SM00474 314 503 4.6E-35 T 22-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 PP4_RS00570 24b17b5c9c8405dfdb58f9ed95411de7 915 ProSitePatterns PS00447 DNA polymerase family A signature. 741 760 - T 22-04-2016 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS00570 24b17b5c9c8405dfdb58f9ed95411de7 915 SMART SM00475 4 266 4.5E-114 T 22-04-2016 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 PP4_RS00570 24b17b5c9c8405dfdb58f9ed95411de7 915 Gene3D G3DSA:1.10.150.20 699 805 8.1E-35 T 22-04-2016 PP4_RS00570 24b17b5c9c8405dfdb58f9ed95411de7 915 SUPERFAMILY SSF56672 508 915 1.67E-158 T 22-04-2016 PP4_RS00570 24b17b5c9c8405dfdb58f9ed95411de7 915 Pfam PF00476 DNA polymerase family A 540 913 1.2E-152 T 22-04-2016 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS00570 24b17b5c9c8405dfdb58f9ed95411de7 915 SMART SM00279 170 205 1.2E-12 T 22-04-2016 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 PP4_RS00570 24b17b5c9c8405dfdb58f9ed95411de7 915 SUPERFAMILY SSF53098 311 503 2.83E-53 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PP4_RS00570 24b17b5c9c8405dfdb58f9ed95411de7 915 PANTHER PTHR10133:SF27 1 914 0.0 T 22-04-2016 PP4_RS00570 24b17b5c9c8405dfdb58f9ed95411de7 915 SUPERFAMILY SSF88723 5 167 3.92E-52 T 22-04-2016 IPR029060 PIN domain-like PP4_RS22115 4ca3d6576467cf6fa54003f47955eebf 322 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 232 296 3.2E-14 T 22-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 PP4_RS22115 4ca3d6576467cf6fa54003f47955eebf 322 PANTHER PTHR24220:SF576 5 321 1.7E-188 T 22-04-2016 PP4_RS22115 4ca3d6576467cf6fa54003f47955eebf 322 SUPERFAMILY SSF52540 3 251 2.3E-64 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS22115 4ca3d6576467cf6fa54003f47955eebf 322 SMART SM00382 31 230 6.9E-17 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS22115 4ca3d6576467cf6fa54003f47955eebf 322 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 231 314 6.0E-20 T 22-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 PP4_RS22115 4ca3d6576467cf6fa54003f47955eebf 322 Pfam PF00005 ABC transporter 23 180 1.6E-29 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS22115 4ca3d6576467cf6fa54003f47955eebf 322 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS22115 4ca3d6576467cf6fa54003f47955eebf 322 PANTHER PTHR24220 5 321 1.7E-188 T 22-04-2016 PP4_RS22115 4ca3d6576467cf6fa54003f47955eebf 322 Gene3D G3DSA:3.40.50.300 3 258 1.6E-73 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26760 9900a18ca502812a25112f625999809a 672 Gene3D G3DSA:1.25.40.10 371 620 1.5E-13 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS26760 9900a18ca502812a25112f625999809a 672 SUPERFAMILY SSF81901 435 619 8.5E-10 T 22-04-2016 PP4_RS26760 9900a18ca502812a25112f625999809a 672 Pfam PF13226 Domain of unknown function (DUF4034) 8 271 2.2E-80 T 22-04-2016 IPR025115 Domain of unknown function DUF4034 PP4_RS15895 9c812d27040924b28c82eaa9a935c391 595 TIGRFAM TIGR03075 PQQ_enz_alc_DH: PQQ-dependent dehydrogenase, methanol/ethanol family 26 556 1.6E-241 T 22-04-2016 IPR017512 PQQ-dependent dehydrogenase, methanol/ethanol family GO:0005509|GO:0016020|GO:0016614|GO:0055114 PP4_RS15895 9c812d27040924b28c82eaa9a935c391 595 Pfam PF01011 PQQ enzyme repeat 502 538 6.5E-9 T 22-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat PP4_RS15895 9c812d27040924b28c82eaa9a935c391 595 ProSitePatterns PS00364 Bacterial quinoprotein dehydrogenases signature 2. 263 284 - T 22-04-2016 IPR001479 Quinoprotein dehydrogenase, conserved site GO:0030288|GO:0055114 PP4_RS15895 9c812d27040924b28c82eaa9a935c391 595 PANTHER PTHR32303:SF2 1 223 8.3E-114 T 22-04-2016 PP4_RS15895 9c812d27040924b28c82eaa9a935c391 595 PANTHER PTHR32303:SF2 401 593 8.3E-114 T 22-04-2016 PP4_RS15895 9c812d27040924b28c82eaa9a935c391 595 PANTHER PTHR32303:SF2 243 364 8.3E-114 T 22-04-2016 PP4_RS15895 9c812d27040924b28c82eaa9a935c391 595 Gene3D G3DSA:2.140.10.10 46 588 1.1E-150 T 22-04-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain PP4_RS15895 9c812d27040924b28c82eaa9a935c391 595 Pfam PF13360 PQQ-like domain 73 235 2.8E-16 T 22-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat PP4_RS15895 9c812d27040924b28c82eaa9a935c391 595 SMART SM00564 288 315 110.0 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS15895 9c812d27040924b28c82eaa9a935c391 595 SMART SM00564 90 121 2.7E-4 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS15895 9c812d27040924b28c82eaa9a935c391 595 SMART SM00564 496 528 0.0013 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS15895 9c812d27040924b28c82eaa9a935c391 595 SMART SM00564 139 170 6.7E-5 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS15895 9c812d27040924b28c82eaa9a935c391 595 SMART SM00564 184 221 28.0 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS15895 9c812d27040924b28c82eaa9a935c391 595 SMART SM00564 445 487 35.0 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS15895 9c812d27040924b28c82eaa9a935c391 595 SUPERFAMILY SSF50998 37 579 2.88E-160 T 22-04-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily PP4_RS15895 9c812d27040924b28c82eaa9a935c391 595 PANTHER PTHR32303 1 223 8.3E-114 T 22-04-2016 PP4_RS15895 9c812d27040924b28c82eaa9a935c391 595 PANTHER PTHR32303 401 593 8.3E-114 T 22-04-2016 PP4_RS15895 9c812d27040924b28c82eaa9a935c391 595 PANTHER PTHR32303 243 364 8.3E-114 T 22-04-2016 PP4_RS26055 f3cdc7b6a480d7ef54a1d38ce5c0c9fe 66 SUPERFAMILY SSF54285 2 65 3.63E-19 T 22-04-2016 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp PP4_RS26055 f3cdc7b6a480d7ef54a1d38ce5c0c9fe 66 Pfam PF02597 ThiS family 3 66 1.1E-15 T 22-04-2016 IPR003749 ThiamineS/Molybdopterin converting factor subunit 1 PP4_RS26055 f3cdc7b6a480d7ef54a1d38ce5c0c9fe 66 PANTHER PTHR34472 1 66 7.4E-27 T 22-04-2016 PP4_RS26055 f3cdc7b6a480d7ef54a1d38ce5c0c9fe 66 Gene3D G3DSA:3.10.20.30 1 66 1.2E-28 T 22-04-2016 IPR012675 Beta-grasp domain PP4_RS26055 f3cdc7b6a480d7ef54a1d38ce5c0c9fe 66 PANTHER PTHR34472:SF1 1 66 7.4E-27 T 22-04-2016 PP4_RS26055 f3cdc7b6a480d7ef54a1d38ce5c0c9fe 66 TIGRFAM TIGR01683 thiS: thiamine biosynthesis protein ThiS 3 66 1.0E-23 T 22-04-2016 IPR010035 ThiS, thiamine-biosynthesis PP4_RS05385 36c4f418c948aada67cc5ea11be67f45 158 Gene3D G3DSA:3.10.450.50 4 154 2.7E-53 T 22-04-2016 IPR032710 NTF2-like domain PP4_RS05385 36c4f418c948aada67cc5ea11be67f45 158 SUPERFAMILY SSF54427 25 130 5.7E-32 T 22-04-2016 IPR032710 NTF2-like domain PP4_RS05385 36c4f418c948aada67cc5ea11be67f45 158 Pfam PF02810 SEC-C motif 136 153 3.3E-9 T 22-04-2016 IPR004027 SEC-C motif PP4_RS05385 36c4f418c948aada67cc5ea11be67f45 158 Hamap MF_00612 UPF0225 protein YchJ [ychJ]. 2 129 26.685 T 22-04-2016 IPR023006 Uncharacterised protein family UPF0225 PP4_RS05385 36c4f418c948aada67cc5ea11be67f45 158 PANTHER PTHR33747 1 154 2.7E-24 T 22-04-2016 PP4_RS05385 36c4f418c948aada67cc5ea11be67f45 158 SUPERFAMILY SSF103642 133 155 1.05E-7 T 22-04-2016 PP4_RS13985 6ff99ce98cee5f14138400fda4b3d39b 415 SUPERFAMILY SSF46626 313 414 2.87E-25 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS13985 6ff99ce98cee5f14138400fda4b3d39b 415 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 311 395 3.1E-10 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS13985 6ff99ce98cee5f14138400fda4b3d39b 415 Gene3D G3DSA:1.10.760.10 172 285 2.7E-14 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS13985 6ff99ce98cee5f14138400fda4b3d39b 415 Gene3D G3DSA:1.10.760.10 23 125 1.4E-16 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS13985 6ff99ce98cee5f14138400fda4b3d39b 415 Pfam PF00034 Cytochrome c 29 125 5.4E-7 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS13985 6ff99ce98cee5f14138400fda4b3d39b 415 SUPERFAMILY SSF46626 20 151 3.6E-21 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS13985 6ff99ce98cee5f14138400fda4b3d39b 415 SUPERFAMILY SSF46626 171 285 8.52E-19 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS13985 6ff99ce98cee5f14138400fda4b3d39b 415 PRINTS PR00605 Class IC cytochrome C signature 320 331 5.3E-7 T 22-04-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 PP4_RS13985 6ff99ce98cee5f14138400fda4b3d39b 415 PRINTS PR00605 Class IC cytochrome C signature 373 395 5.3E-7 T 22-04-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 PP4_RS13985 6ff99ce98cee5f14138400fda4b3d39b 415 PIRSF PIRSF000018 1 415 1.5E-166 T 22-04-2016 IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit GO:0005506|GO:0016020|GO:0016614|GO:0020037 PP4_RS13985 6ff99ce98cee5f14138400fda4b3d39b 415 PANTHER PTHR35008:SF3 19 415 5.5E-230 T 22-04-2016 PP4_RS13985 6ff99ce98cee5f14138400fda4b3d39b 415 Gene3D G3DSA:1.10.760.10 313 415 2.2E-27 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS13985 6ff99ce98cee5f14138400fda4b3d39b 415 PANTHER PTHR35008 19 415 5.5E-230 T 22-04-2016 PP4_RS22140 1d6aef1757d094561be3a4c5b470c95d 113 PANTHER PTHR33271 40 112 1.5E-23 T 22-04-2016 PP4_RS22140 1d6aef1757d094561be3a4c5b470c95d 113 Pfam PF05899 Protein of unknown function (DUF861) 38 109 1.8E-27 T 22-04-2016 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 PP4_RS22140 1d6aef1757d094561be3a4c5b470c95d 113 SUPERFAMILY SSF51182 19 111 3.39E-17 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS22140 1d6aef1757d094561be3a4c5b470c95d 113 Gene3D G3DSA:2.60.120.10 24 111 3.4E-30 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS07725 5203665b5cade26e98d031f30c6e5a2b 326 PRINTS PR00605 Class IC cytochrome C signature 197 219 9.6E-6 T 22-04-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 PP4_RS07725 5203665b5cade26e98d031f30c6e5a2b 326 PRINTS PR00605 Class IC cytochrome C signature 155 166 9.6E-6 T 22-04-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 PP4_RS07725 5203665b5cade26e98d031f30c6e5a2b 326 Gene3D G3DSA:1.10.760.10 230 317 6.2E-24 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS07725 5203665b5cade26e98d031f30c6e5a2b 326 SUPERFAMILY SSF46626 55 78 6.11E-34 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS07725 5203665b5cade26e98d031f30c6e5a2b 326 SUPERFAMILY SSF46626 125 222 6.11E-34 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS07725 5203665b5cade26e98d031f30c6e5a2b 326 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 234 312 5.3E-11 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS07725 5203665b5cade26e98d031f30c6e5a2b 326 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 145 219 4.1E-14 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS07725 5203665b5cade26e98d031f30c6e5a2b 326 TIGRFAM TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III 34 318 7.2E-78 T 22-04-2016 IPR004678 Cytochrome c oxidase cbb3-type, subunit III UniPathway: UPA00705 PP4_RS07725 5203665b5cade26e98d031f30c6e5a2b 326 PIRSF PIRSF000006 1 319 1.8E-105 T 22-04-2016 IPR004678 Cytochrome c oxidase cbb3-type, subunit III UniPathway: UPA00705 PP4_RS07725 5203665b5cade26e98d031f30c6e5a2b 326 SUPERFAMILY SSF46626 231 321 2.33E-21 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS07725 5203665b5cade26e98d031f30c6e5a2b 326 PANTHER PTHR33751 111 322 7.4E-123 T 22-04-2016 PP4_RS07725 5203665b5cade26e98d031f30c6e5a2b 326 PANTHER PTHR33751 25 79 7.4E-123 T 22-04-2016 PP4_RS07725 5203665b5cade26e98d031f30c6e5a2b 326 Pfam PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP 37 83 1.1E-23 T 22-04-2016 IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal UniPathway: UPA00705 PP4_RS07725 5203665b5cade26e98d031f30c6e5a2b 326 Gene3D G3DSA:1.10.760.10 140 222 2.8E-31 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS07725 5203665b5cade26e98d031f30c6e5a2b 326 Gene3D G3DSA:1.10.760.10 60 82 2.8E-31 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS07725 5203665b5cade26e98d031f30c6e5a2b 326 PANTHER PTHR33751:SF1 111 322 7.4E-123 T 22-04-2016 PP4_RS07725 5203665b5cade26e98d031f30c6e5a2b 326 PANTHER PTHR33751:SF1 25 79 7.4E-123 T 22-04-2016 PP4_RS06660 570b28f6e18512b94bb714220c249d88 145 Gene3D G3DSA:1.10.10.10 3 144 3.1E-34 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS06660 570b28f6e18512b94bb714220c249d88 145 Pfam PF12802 MarR family 33 92 2.0E-12 T 22-04-2016 PP4_RS06660 570b28f6e18512b94bb714220c249d88 145 SUPERFAMILY SSF46785 11 143 1.2E-28 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS06660 570b28f6e18512b94bb714220c249d88 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 69 84 6.2E-12 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS06660 570b28f6e18512b94bb714220c249d88 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 88 104 6.2E-12 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS06660 570b28f6e18512b94bb714220c249d88 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 52 68 6.2E-12 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS06660 570b28f6e18512b94bb714220c249d88 145 PRINTS PR00598 Bacterial regulatory protein MarR family signature 118 138 6.2E-12 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS06660 570b28f6e18512b94bb714220c249d88 145 SMART SM00347 27 128 6.5E-19 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS06660 570b28f6e18512b94bb714220c249d88 145 PANTHER PTHR33164:SF16 5 143 1.9E-26 T 22-04-2016 PP4_RS06660 570b28f6e18512b94bb714220c249d88 145 PANTHER PTHR33164 5 143 1.9E-26 T 22-04-2016 PP4_RS03450 b46aa21c108dd44018bb0b560b77b55b 691 Pfam PF13604 AAA domain 205 374 2.9E-30 T 22-04-2016 PP4_RS03450 b46aa21c108dd44018bb0b560b77b55b 691 TIGRFAM TIGR01447 recD: exodeoxyribonuclease V, alpha subunit 34 688 1.0E-193 T 22-04-2016 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 PP4_RS03450 b46aa21c108dd44018bb0b560b77b55b 691 SUPERFAMILY SSF52540 32 417 1.4E-48 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03450 b46aa21c108dd44018bb0b560b77b55b 691 Gene3D G3DSA:3.40.50.300 411 437 6.3E-44 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03450 b46aa21c108dd44018bb0b560b77b55b 691 Gene3D G3DSA:3.40.50.300 349 362 6.3E-44 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03450 b46aa21c108dd44018bb0b560b77b55b 691 Gene3D G3DSA:3.40.50.300 606 669 6.3E-44 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03450 b46aa21c108dd44018bb0b560b77b55b 691 Gene3D G3DSA:3.40.50.300 496 544 6.3E-44 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03450 b46aa21c108dd44018bb0b560b77b55b 691 PANTHER PTHR10887:SF351 197 373 8.7E-94 T 22-04-2016 PP4_RS03450 b46aa21c108dd44018bb0b560b77b55b 691 PANTHER PTHR10887:SF351 80 106 8.7E-94 T 22-04-2016 PP4_RS03450 b46aa21c108dd44018bb0b560b77b55b 691 Gene3D G3DSA:3.40.50.300 202 348 1.9E-13 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03450 b46aa21c108dd44018bb0b560b77b55b 691 SUPERFAMILY SSF52540 404 435 3.01E-51 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03450 b46aa21c108dd44018bb0b560b77b55b 691 SUPERFAMILY SSF52540 334 373 3.01E-51 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03450 b46aa21c108dd44018bb0b560b77b55b 691 SUPERFAMILY SSF52540 514 668 3.01E-51 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03450 b46aa21c108dd44018bb0b560b77b55b 691 PANTHER PTHR10887 197 373 8.7E-94 T 22-04-2016 PP4_RS03450 b46aa21c108dd44018bb0b560b77b55b 691 PANTHER PTHR10887 80 106 8.7E-94 T 22-04-2016 PP4_RS03450 b46aa21c108dd44018bb0b560b77b55b 691 Pfam PF13538 UvrD-like helicase C-terminal domain 618 661 6.2E-14 T 22-04-2016 IPR027785 UvrD-like helicase C-terminal domain PP4_RS03450 b46aa21c108dd44018bb0b560b77b55b 691 Hamap MF_01487 RecBCD enzyme subunit RecD [recD]. 42 690 55.278 T 22-04-2016 IPR006344 RecBCD enzyme subunit RecD GO:0004386|GO:0006302|GO:0006310|GO:0008854|GO:0009338 PP4_RS16710 e915b473cc9a2bb5b7ef647a366c7ff7 243 SMART SM01007 24 201 0.001 T 22-04-2016 IPR001303 Class II aldolase/adducin N-terminal PP4_RS16710 e915b473cc9a2bb5b7ef647a366c7ff7 243 SUPERFAMILY SSF53639 20 224 2.35E-28 T 22-04-2016 IPR001303 Class II aldolase/adducin N-terminal PP4_RS16710 e915b473cc9a2bb5b7ef647a366c7ff7 243 Gene3D G3DSA:3.40.225.10 49 215 1.8E-13 T 22-04-2016 IPR001303 Class II aldolase/adducin N-terminal PP4_RS16710 e915b473cc9a2bb5b7ef647a366c7ff7 243 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 62 201 2.1E-10 T 22-04-2016 IPR001303 Class II aldolase/adducin N-terminal PP4_RS27130 bfb870bd3ad80ef0ed50dcc63e4bf981 256 Gene3D G3DSA:1.20.58.220 129 238 3.6E-35 T 22-04-2016 PP4_RS27130 bfb870bd3ad80ef0ed50dcc63e4bf981 256 Gene3D G3DSA:1.20.58.220 10 120 6.9E-38 T 22-04-2016 PP4_RS27130 bfb870bd3ad80ef0ed50dcc63e4bf981 256 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 13 224 2.4E-80 T 22-04-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 PP4_RS27130 bfb870bd3ad80ef0ed50dcc63e4bf981 256 SUPERFAMILY SSF109755 13 233 6.17E-74 T 22-04-2016 PP4_RS27130 bfb870bd3ad80ef0ed50dcc63e4bf981 256 Pfam PF01895 PhoU domain 131 214 9.9E-19 T 22-04-2016 IPR026022 PhoU domain PP4_RS27130 bfb870bd3ad80ef0ed50dcc63e4bf981 256 Pfam PF01895 PhoU domain 27 113 2.5E-23 T 22-04-2016 IPR026022 PhoU domain PP4_RS27130 bfb870bd3ad80ef0ed50dcc63e4bf981 256 PANTHER PTHR10010:SF14 7 231 1.4E-91 T 22-04-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 PP4_RS27130 bfb870bd3ad80ef0ed50dcc63e4bf981 256 PIRSF PIRSF003107 8 229 2.4E-79 T 22-04-2016 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 PP4_RS27130 bfb870bd3ad80ef0ed50dcc63e4bf981 256 PANTHER PTHR10010 7 231 1.4E-91 T 22-04-2016 PP4_RS13980 27e7ba454ffebc43c6bcd113e4a59a38 339 SUPERFAMILY SSF47413 11 70 3.28E-14 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS13980 27e7ba454ffebc43c6bcd113e4a59a38 339 Pfam PF00532 Periplasmic binding proteins and sugar binding domain of LacI family 72 312 1.2E-17 T 22-04-2016 IPR001761 Periplasmic binding protein/LacI sugar binding domain PP4_RS13980 27e7ba454ffebc43c6bcd113e4a59a38 339 PANTHER PTHR30146:SF27 11 339 2.4E-174 T 22-04-2016 PP4_RS13980 27e7ba454ffebc43c6bcd113e4a59a38 339 Gene3D G3DSA:1.10.260.40 12 64 3.2E-21 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS13980 27e7ba454ffebc43c6bcd113e4a59a38 339 SMART SM00354 11 82 2.4E-28 T 22-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PP4_RS13980 27e7ba454ffebc43c6bcd113e4a59a38 339 PANTHER PTHR30146 11 339 2.4E-174 T 22-04-2016 PP4_RS13980 27e7ba454ffebc43c6bcd113e4a59a38 339 Gene3D G3DSA:3.40.50.2300 184 317 6.4E-20 T 22-04-2016 PP4_RS13980 27e7ba454ffebc43c6bcd113e4a59a38 339 ProSitePatterns PS00356 LacI-type HTH domain signature. 14 32 - T 22-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PP4_RS13980 27e7ba454ffebc43c6bcd113e4a59a38 339 SUPERFAMILY SSF53822 69 322 1.21E-57 T 22-04-2016 IPR028082 Periplasmic binding protein-like I PP4_RS13980 27e7ba454ffebc43c6bcd113e4a59a38 339 Gene3D G3DSA:3.40.50.2300 65 183 2.2E-43 T 22-04-2016 PP4_RS13980 27e7ba454ffebc43c6bcd113e4a59a38 339 Pfam PF00356 Bacterial regulatory proteins, lacI family 13 59 7.0E-14 T 22-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PP4_RS13915 57654086358386723e245e45ee5dd1bb 156 SMART SM00344 12 118 2.3E-28 T 22-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 PP4_RS13915 57654086358386723e245e45ee5dd1bb 156 PANTHER PTHR30154 4 148 3.9E-38 T 22-04-2016 PP4_RS13915 57654086358386723e245e45ee5dd1bb 156 Pfam PF13404 AsnC-type helix-turn-helix domain 12 53 2.2E-15 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS13915 57654086358386723e245e45ee5dd1bb 156 Gene3D G3DSA:3.30.70.920 64 149 3.5E-16 T 22-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PP4_RS13915 57654086358386723e245e45ee5dd1bb 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 39 1.3E-12 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS13915 57654086358386723e245e45ee5dd1bb 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 12 28 1.3E-12 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS13915 57654086358386723e245e45ee5dd1bb 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 39 58 1.3E-12 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS13915 57654086358386723e245e45ee5dd1bb 156 Pfam PF01037 Lrp/AsnC ligand binding domain 83 148 2.2E-12 T 22-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PP4_RS13915 57654086358386723e245e45ee5dd1bb 156 SUPERFAMILY SSF46785 12 70 1.7E-14 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS13915 57654086358386723e245e45ee5dd1bb 156 SUPERFAMILY SSF54909 76 151 1.88E-13 T 22-04-2016 IPR011008 Dimeric alpha-beta barrel PP4_RS13915 57654086358386723e245e45ee5dd1bb 156 Gene3D G3DSA:1.10.10.10 10 63 1.2E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS18060 5a14a663da8e785b0784ea168df9aa9f 971 Pfam PF00361 Proton-conducting membrane transporter 126 405 2.5E-64 T 22-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 PP4_RS18060 5a14a663da8e785b0784ea168df9aa9f 971 PANTHER PTHR22773 1 583 4.6E-210 T 22-04-2016 PP4_RS18060 5a14a663da8e785b0784ea168df9aa9f 971 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 75 100 3.4E-39 T 22-04-2016 PP4_RS18060 5a14a663da8e785b0784ea168df9aa9f 971 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 238 264 3.4E-39 T 22-04-2016 PP4_RS18060 5a14a663da8e785b0784ea168df9aa9f 971 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 306 318 3.4E-39 T 22-04-2016 PP4_RS18060 5a14a663da8e785b0784ea168df9aa9f 971 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 150 171 3.4E-39 T 22-04-2016 PP4_RS18060 5a14a663da8e785b0784ea168df9aa9f 971 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 103 123 3.4E-39 T 22-04-2016 PP4_RS18060 5a14a663da8e785b0784ea168df9aa9f 971 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 415 434 3.4E-39 T 22-04-2016 PP4_RS18060 5a14a663da8e785b0784ea168df9aa9f 971 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 216 237 3.4E-39 T 22-04-2016 PP4_RS18060 5a14a663da8e785b0784ea168df9aa9f 971 Pfam PF13244 Domain of unknown function (DUF4040) 615 680 7.2E-21 T 22-04-2016 IPR025383 Domain of unknown function DUF4040 PP4_RS18060 5a14a663da8e785b0784ea168df9aa9f 971 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 822 943 5.3E-35 T 22-04-2016 IPR007182 Na+/H+ antiporter MnhB subunit-related protein PP4_RS18060 5a14a663da8e785b0784ea168df9aa9f 971 PANTHER PTHR22773:SF46 1 583 4.6E-210 T 22-04-2016 PP4_RS18060 5a14a663da8e785b0784ea168df9aa9f 971 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 62 113 1.0E-8 T 22-04-2016 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal PP4_RS03535 d9f9ea05794ff4d9a2018b24040c238c 293 SUPERFAMILY SSF53850 89 292 1.14E-33 T 22-04-2016 PP4_RS03535 d9f9ea05794ff4d9a2018b24040c238c 293 Gene3D G3DSA:1.10.10.10 3 89 1.6E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS03535 d9f9ea05794ff4d9a2018b24040c238c 293 PANTHER PTHR30419 1 293 2.6E-106 T 22-04-2016 PP4_RS03535 d9f9ea05794ff4d9a2018b24040c238c 293 Gene3D G3DSA:3.40.190.10 174 263 4.6E-11 T 22-04-2016 PP4_RS03535 d9f9ea05794ff4d9a2018b24040c238c 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 1.8E-17 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS03535 d9f9ea05794ff4d9a2018b24040c238c 293 Pfam PF03466 LysR substrate binding domain 89 291 2.5E-29 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS03535 d9f9ea05794ff4d9a2018b24040c238c 293 PANTHER PTHR30419:SF2 1 293 2.6E-106 T 22-04-2016 PP4_RS03535 d9f9ea05794ff4d9a2018b24040c238c 293 Gene3D G3DSA:3.40.190.10 90 173 3.5E-21 T 22-04-2016 PP4_RS03535 d9f9ea05794ff4d9a2018b24040c238c 293 SUPERFAMILY SSF46785 2 113 1.25E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS20285 8358dc4840668a40c295cba9e6f84a2e 269 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 1.1E-11 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS20285 8358dc4840668a40c295cba9e6f84a2e 269 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 1.1E-11 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS20285 8358dc4840668a40c295cba9e6f84a2e 269 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 1.1E-11 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS20285 8358dc4840668a40c295cba9e6f84a2e 269 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 181 0.0012 T 22-04-2016 PP4_RS20285 8358dc4840668a40c295cba9e6f84a2e 269 Gene3D G3DSA:3.40.50.720 4 224 6.3E-64 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS20285 8358dc4840668a40c295cba9e6f84a2e 269 Pfam PF00106 short chain dehydrogenase 4 190 2.6E-51 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS20285 8358dc4840668a40c295cba9e6f84a2e 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 5.2E-26 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS20285 8358dc4840668a40c295cba9e6f84a2e 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 5.2E-26 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS20285 8358dc4840668a40c295cba9e6f84a2e 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 5.2E-26 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS20285 8358dc4840668a40c295cba9e6f84a2e 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 5.2E-26 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS20285 8358dc4840668a40c295cba9e6f84a2e 269 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 5.2E-26 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS20285 8358dc4840668a40c295cba9e6f84a2e 269 PANTHER PTHR24322 7 134 2.9E-50 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS20285 8358dc4840668a40c295cba9e6f84a2e 269 PANTHER PTHR24322 150 182 2.9E-50 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS20285 8358dc4840668a40c295cba9e6f84a2e 269 SUPERFAMILY SSF51735 4 258 8.11E-65 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS24525 04a208f6e18fe61b58996a542f5d85d4 438 Gene3D G3DSA:1.10.530.10 213 246 2.0E-4 T 22-04-2016 PP4_RS24525 04a208f6e18fe61b58996a542f5d85d4 438 Gene3D G3DSA:1.10.530.10 154 168 2.0E-4 T 22-04-2016 PP4_RS24525 04a208f6e18fe61b58996a542f5d85d4 438 Pfam PF01471 Putative peptidoglycan binding domain 381 435 7.6E-9 T 22-04-2016 IPR002477 Peptidoglycan binding-like PP4_RS24525 04a208f6e18fe61b58996a542f5d85d4 438 Pfam PF13406 Transglycosylase SLT domain 66 359 1.7E-115 T 22-04-2016 IPR031304 Transglycosylase SLT domain 2 PP4_RS24525 04a208f6e18fe61b58996a542f5d85d4 438 PANTHER PTHR30163:SF2 57 438 7.8E-170 T 22-04-2016 PP4_RS24525 04a208f6e18fe61b58996a542f5d85d4 438 Gene3D G3DSA:1.10.530.10 109 153 7.2E-60 T 22-04-2016 PP4_RS24525 04a208f6e18fe61b58996a542f5d85d4 438 Gene3D G3DSA:1.10.530.10 247 362 7.2E-60 T 22-04-2016 PP4_RS24525 04a208f6e18fe61b58996a542f5d85d4 438 Gene3D G3DSA:1.10.101.10 380 437 5.4E-10 T 22-04-2016 IPR002477 Peptidoglycan binding-like PP4_RS24525 04a208f6e18fe61b58996a542f5d85d4 438 PANTHER PTHR30163 57 438 7.8E-170 T 22-04-2016 IPR011757 Lytic transglycosylase MltB PP4_RS24525 04a208f6e18fe61b58996a542f5d85d4 438 TIGRFAM TIGR02283 MltB_2: lytic murein transglycosylase 66 362 2.1E-121 T 22-04-2016 IPR011970 Lytic murein transglycosylase PP4_RS24525 04a208f6e18fe61b58996a542f5d85d4 438 SUPERFAMILY SSF53955 64 364 2.62E-105 T 22-04-2016 IPR023346 Lysozyme-like domain PP4_RS24525 04a208f6e18fe61b58996a542f5d85d4 438 SUPERFAMILY SSF47090 368 437 3.66E-14 T 22-04-2016 IPR002477 Peptidoglycan binding-like PP4_RS18160 28dc5c8276dfe2470b9cf266a1e50dfc 271 PANTHER PTHR20881 9 269 6.8E-107 T 22-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 PP4_RS18160 28dc5c8276dfe2470b9cf266a1e50dfc 271 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 11 269 3.8E-80 T 22-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 PP4_RS18160 28dc5c8276dfe2470b9cf266a1e50dfc 271 PIRSF PIRSF000388 1 271 2.6E-96 T 22-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 PP4_RS18160 28dc5c8276dfe2470b9cf266a1e50dfc 271 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 10 269 36.708 T 22-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 PP4_RS18160 28dc5c8276dfe2470b9cf266a1e50dfc 271 Gene3D G3DSA:3.20.20.60 8 269 5.8E-95 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PP4_RS18160 28dc5c8276dfe2470b9cf266a1e50dfc 271 Pfam PF02548 Ketopantoate hydroxymethyltransferase 9 264 2.8E-94 T 22-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 PP4_RS18160 28dc5c8276dfe2470b9cf266a1e50dfc 271 SUPERFAMILY SSF51621 9 269 7.46E-90 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PP4_RS07670 476f9dfbe85a70c26122edca5f436959 691 SMART SM00382 37 179 2.2E-7 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS07670 476f9dfbe85a70c26122edca5f436959 691 Pfam PF12169 DNA polymerase III subunits gamma and tau domain III 233 359 4.7E-32 T 22-04-2016 IPR022754 DNA polymerase III, gamma subunit, domain III GO:0003887 PP4_RS07670 476f9dfbe85a70c26122edca5f436959 691 Gene3D G3DSA:1.20.272.10 243 360 2.5E-45 T 22-04-2016 PP4_RS07670 476f9dfbe85a70c26122edca5f436959 691 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 41 59 3.9E-5 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 PP4_RS07670 476f9dfbe85a70c26122edca5f436959 691 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 124 142 3.9E-5 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 PP4_RS07670 476f9dfbe85a70c26122edca5f436959 691 Pfam PF13177 DNA polymerase III, delta subunit 20 178 1.4E-43 T 22-04-2016 PP4_RS07670 476f9dfbe85a70c26122edca5f436959 691 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 3 355 1.0E-130 T 22-04-2016 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 PP4_RS07670 476f9dfbe85a70c26122edca5f436959 691 SUPERFAMILY SSF52540 29 222 5.27E-58 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS07670 476f9dfbe85a70c26122edca5f436959 691 Gene3D G3DSA:3.40.50.300 15 166 1.5E-67 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS07670 476f9dfbe85a70c26122edca5f436959 691 PANTHER PTHR11669:SF0 1 405 1.0E-180 T 22-04-2016 PP4_RS07670 476f9dfbe85a70c26122edca5f436959 691 SUPERFAMILY SSF48019 244 365 8.25E-34 T 22-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 PP4_RS07670 476f9dfbe85a70c26122edca5f436959 691 PANTHER PTHR11669 1 405 1.0E-180 T 22-04-2016 PP4_RS07670 476f9dfbe85a70c26122edca5f436959 691 Pfam PF12170 DNA polymerase III tau subunit V interacting with alpha 562 680 9.2E-16 T 22-04-2016 IPR021029 DNA polymerase III, tau subunit, domain V GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS07670 476f9dfbe85a70c26122edca5f436959 691 Gene3D G3DSA:1.10.8.60 167 242 1.2E-31 T 22-04-2016 PP4_RS25350 3f669e57a2cd3090b67e74463555553e 353 TIGRFAM TIGR01532 E4PD_g-proteo: erythrose-4-phosphate dehydrogenase 8 336 1.6E-175 T 22-04-2016 IPR006422 D-erythrose-4-phosphate dehydrogenase GO:0005737|GO:0042823|GO:0048001|GO:0051287|GO:0055114 KEGG: 00750+1.2.1.72|UniPathway: UPA00244 PP4_RS25350 3f669e57a2cd3090b67e74463555553e 353 SMART SM00846 7 161 1.2E-69 T 22-04-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 PP4_RS25350 3f669e57a2cd3090b67e74463555553e 353 Gene3D G3DSA:3.40.50.720 6 169 4.7E-56 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS25350 3f669e57a2cd3090b67e74463555553e 353 PANTHER PTHR10836 8 349 1.9E-215 T 22-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 PP4_RS25350 3f669e57a2cd3090b67e74463555553e 353 SUPERFAMILY SSF55347 161 325 1.9E-57 T 22-04-2016 PP4_RS25350 3f669e57a2cd3090b67e74463555553e 353 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 167 323 2.3E-51 T 22-04-2016 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: REACT_474 PP4_RS25350 3f669e57a2cd3090b67e74463555553e 353 Gene3D G3DSA:3.30.360.10 170 326 3.7E-59 T 22-04-2016 PP4_RS25350 3f669e57a2cd3090b67e74463555553e 353 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 280 295 2.6E-24 T 22-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 PP4_RS25350 3f669e57a2cd3090b67e74463555553e 353 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 239 256 2.6E-24 T 22-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 PP4_RS25350 3f669e57a2cd3090b67e74463555553e 353 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 116 129 2.6E-24 T 22-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 PP4_RS25350 3f669e57a2cd3090b67e74463555553e 353 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 182 198 2.6E-24 T 22-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 PP4_RS25350 3f669e57a2cd3090b67e74463555553e 353 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 155 173 2.6E-24 T 22-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 PP4_RS25350 3f669e57a2cd3090b67e74463555553e 353 PIRSF PIRSF000149 5 346 9.4E-129 T 22-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 PP4_RS25350 3f669e57a2cd3090b67e74463555553e 353 PANTHER PTHR10836:SF47 8 349 1.9E-215 T 22-04-2016 PP4_RS25350 3f669e57a2cd3090b67e74463555553e 353 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 8 161 5.9E-48 T 22-04-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 PP4_RS25350 3f669e57a2cd3090b67e74463555553e 353 SUPERFAMILY SSF51735 8 177 6.59E-52 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS26780 0e40da2aacfd7aa5559bb8a77e040309 209 SUPERFAMILY SSF52499 5 202 1.44E-53 T 22-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PP4_RS26780 0e40da2aacfd7aa5559bb8a77e040309 209 Gene3D G3DSA:3.40.50.850 7 204 1.1E-49 T 22-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PP4_RS26780 0e40da2aacfd7aa5559bb8a77e040309 209 PANTHER PTHR14119 6 203 1.6E-119 T 22-04-2016 PP4_RS26780 0e40da2aacfd7aa5559bb8a77e040309 209 PANTHER PTHR14119:SF11 6 203 1.6E-119 T 22-04-2016 PP4_RS26780 0e40da2aacfd7aa5559bb8a77e040309 209 Pfam PF00857 Isochorismatase family 15 166 2.4E-22 T 22-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PP4_RS21335 034b57861c8aa7542a34bb88b5a2f716 291 TIGRFAM TIGR02285 TIGR02285: conserved hypothetical protein 13 280 4.9E-97 T 22-04-2016 IPR011972 Conserved hypothetical protein CHP02285 PP4_RS21335 034b57861c8aa7542a34bb88b5a2f716 291 SUPERFAMILY SSF53850 36 275 3.48E-15 T 22-04-2016 PP4_RS27050 c4cd461fe414bd4007df60223b9d2771 308 Gene3D G3DSA:1.10.10.10 1 83 3.7E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS27050 c4cd461fe414bd4007df60223b9d2771 308 SUPERFAMILY SSF46785 1 85 7.32E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS27050 c4cd461fe414bd4007df60223b9d2771 308 PANTHER PTHR30346 1 295 5.9E-110 T 22-04-2016 PP4_RS27050 c4cd461fe414bd4007df60223b9d2771 308 Gene3D G3DSA:3.40.190.10 176 272 5.6E-30 T 22-04-2016 PP4_RS27050 c4cd461fe414bd4007df60223b9d2771 308 SUPERFAMILY SSF53850 88 295 4.75E-39 T 22-04-2016 PP4_RS27050 c4cd461fe414bd4007df60223b9d2771 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 6.6E-17 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS27050 c4cd461fe414bd4007df60223b9d2771 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.4E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS27050 c4cd461fe414bd4007df60223b9d2771 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.4E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS27050 c4cd461fe414bd4007df60223b9d2771 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.4E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS27050 c4cd461fe414bd4007df60223b9d2771 308 PANTHER PTHR30346:SF15 1 295 5.9E-110 T 22-04-2016 PP4_RS27050 c4cd461fe414bd4007df60223b9d2771 308 Gene3D G3DSA:3.40.190.10 93 175 4.9E-15 T 22-04-2016 PP4_RS27050 c4cd461fe414bd4007df60223b9d2771 308 Pfam PF03466 LysR substrate binding domain 88 295 6.3E-46 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS02295 f3d250e11014beb0f6f0501e85df1ca0 349 PANTHER PTHR11922 1 336 2.3E-103 T 22-04-2016 PP4_RS02295 f3d250e11014beb0f6f0501e85df1ca0 349 SUPERFAMILY SSF47648 1 69 2.49E-20 T 22-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain PP4_RS02295 f3d250e11014beb0f6f0501e85df1ca0 349 TIGRFAM TIGR01245 trpD: anthranilate phosphoribosyltransferase 8 337 5.8E-123 T 22-04-2016 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18|UniPathway: UPA00035 PP4_RS02295 f3d250e11014beb0f6f0501e85df1ca0 349 Gene3D G3DSA:1.20.970.10 1 66 5.3E-25 T 22-04-2016 PP4_RS02295 f3d250e11014beb0f6f0501e85df1ca0 349 Pfam PF02885 Glycosyl transferase family, helical bundle domain 11 64 1.0E-17 T 22-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain PP4_RS02295 f3d250e11014beb0f6f0501e85df1ca0 349 SUPERFAMILY SSF52418 76 336 2.35E-88 T 22-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 PP4_RS02295 f3d250e11014beb0f6f0501e85df1ca0 349 Hamap MF_00211 Anthranilate phosphoribosyltransferase [trpD]. 5 339 37.573 T 22-04-2016 IPR005940 Anthranilate phosphoribosyl transferase GO:0000162|GO:0004048 KEGG: 00400+2.4.2.18|UniPathway: UPA00035 PP4_RS02295 f3d250e11014beb0f6f0501e85df1ca0 349 PANTHER PTHR11922:SF5 1 336 2.3E-103 T 22-04-2016 PP4_RS02295 f3d250e11014beb0f6f0501e85df1ca0 349 Gene3D G3DSA:3.40.1030.10 75 340 1.0E-99 T 22-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 PP4_RS02295 f3d250e11014beb0f6f0501e85df1ca0 349 Pfam PF00591 Glycosyl transferase family, a/b domain 76 329 6.8E-99 T 22-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 PP4_RS17145 92c697c34654cce50b6563da98811273 428 SUPERFAMILY SSF47384 208 270 3.53E-8 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS17145 92c697c34654cce50b6563da98811273 428 Gene3D G3DSA:3.30.565.10 270 427 1.7E-32 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS17145 92c697c34654cce50b6563da98811273 428 PRINTS PR00344 Bacterial sensor protein C-terminal signature 374 384 1.3E-11 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS17145 92c697c34654cce50b6563da98811273 428 PRINTS PR00344 Bacterial sensor protein C-terminal signature 391 409 1.3E-11 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS17145 92c697c34654cce50b6563da98811273 428 PRINTS PR00344 Bacterial sensor protein C-terminal signature 356 370 1.3E-11 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS17145 92c697c34654cce50b6563da98811273 428 PANTHER PTHR24423 165 427 1.4E-62 T 22-04-2016 PP4_RS17145 92c697c34654cce50b6563da98811273 428 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 325 427 3.6E-21 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS17145 92c697c34654cce50b6563da98811273 428 Gene3D G3DSA:1.10.287.130 216 269 8.0E-11 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS17145 92c697c34654cce50b6563da98811273 428 SMART SM00387 322 428 5.7E-28 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS17145 92c697c34654cce50b6563da98811273 428 PANTHER PTHR24423:SF559 165 427 1.4E-62 T 22-04-2016 PP4_RS17145 92c697c34654cce50b6563da98811273 428 Pfam PF00672 HAMP domain 153 219 7.1E-7 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS17145 92c697c34654cce50b6563da98811273 428 SUPERFAMILY SSF55874 286 427 7.33E-34 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS15880 1a797a25935b779a3a677114d5a2840d 556 Gene3D G3DSA:1.10.287.130 188 256 1.0E-8 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS15880 1a797a25935b779a3a677114d5a2840d 556 Pfam PF00512 His Kinase A (phospho-acceptor) domain 195 259 1.2E-8 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS15880 1a797a25935b779a3a677114d5a2840d 556 SUPERFAMILY SSF55785 31 155 1.29E-13 T 22-04-2016 IPR000014 PAS domain PP4_RS15880 1a797a25935b779a3a677114d5a2840d 556 SMART SM00387 304 415 1.3E-26 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS15880 1a797a25935b779a3a677114d5a2840d 556 SUPERFAMILY SSF47384 180 258 1.96E-12 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS15880 1a797a25935b779a3a677114d5a2840d 556 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 40 164 6.5E-14 T 22-04-2016 IPR000014 PAS domain PP4_RS15880 1a797a25935b779a3a677114d5a2840d 556 SMART SM00448 437 549 1.8E-7 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS15880 1a797a25935b779a3a677114d5a2840d 556 PRINTS PR00344 Bacterial sensor protein C-terminal signature 399 412 2.0E-10 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS15880 1a797a25935b779a3a677114d5a2840d 556 PRINTS PR00344 Bacterial sensor protein C-terminal signature 340 354 2.0E-10 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS15880 1a797a25935b779a3a677114d5a2840d 556 PRINTS PR00344 Bacterial sensor protein C-terminal signature 375 393 2.0E-10 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS15880 1a797a25935b779a3a677114d5a2840d 556 Gene3D G3DSA:3.30.450.20 37 155 7.3E-14 T 22-04-2016 PP4_RS15880 1a797a25935b779a3a677114d5a2840d 556 Pfam PF00072 Response regulator receiver domain 440 549 1.0E-10 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS15880 1a797a25935b779a3a677114d5a2840d 556 PANTHER PTHR24423:SF439 34 172 1.0E-135 T 22-04-2016 PP4_RS15880 1a797a25935b779a3a677114d5a2840d 556 PANTHER PTHR24423:SF439 191 555 1.0E-135 T 22-04-2016 PP4_RS15880 1a797a25935b779a3a677114d5a2840d 556 Gene3D G3DSA:3.40.50.2300 436 555 2.2E-18 T 22-04-2016 PP4_RS15880 1a797a25935b779a3a677114d5a2840d 556 PANTHER PTHR24423 34 172 1.0E-135 T 22-04-2016 PP4_RS15880 1a797a25935b779a3a677114d5a2840d 556 PANTHER PTHR24423 191 555 1.0E-135 T 22-04-2016 PP4_RS15880 1a797a25935b779a3a677114d5a2840d 556 SMART SM00388 195 260 5.7E-11 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS15880 1a797a25935b779a3a677114d5a2840d 556 Gene3D G3DSA:3.30.565.10 267 415 1.5E-34 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS15880 1a797a25935b779a3a677114d5a2840d 556 SUPERFAMILY SSF52172 435 554 2.28E-19 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS15880 1a797a25935b779a3a677114d5a2840d 556 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 307 414 2.2E-17 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS15880 1a797a25935b779a3a677114d5a2840d 556 SUPERFAMILY SSF55874 250 413 9.3E-36 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS01830 16a73132fbf4b40c4bb9f5e868c913fe 166 Pfam PF05618 Putative ATP-dependant zinc protease 22 163 3.3E-46 T 22-04-2016 PP4_RS01830 16a73132fbf4b40c4bb9f5e868c913fe 166 PANTHER PTHR38037 1 166 1.8E-49 T 22-04-2016 PP4_RS01830 16a73132fbf4b40c4bb9f5e868c913fe 166 Gene3D G3DSA:2.40.70.10 20 154 9.2E-43 T 22-04-2016 IPR021109 Aspartic peptidase domain PP4_RS01830 16a73132fbf4b40c4bb9f5e868c913fe 166 SUPERFAMILY SSF50630 22 161 3.54E-39 T 22-04-2016 IPR021109 Aspartic peptidase domain PP4_RS19430 d707e46f909f102e635222ce14ed32a2 671 SMART SM00490 458 544 8.9E-18 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS19430 d707e46f909f102e635222ce14ed32a2 671 SUPERFAMILY SSF52540 36 81 5.58E-36 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS19430 d707e46f909f102e635222ce14ed32a2 671 SUPERFAMILY SSF52540 457 584 5.58E-36 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS19430 d707e46f909f102e635222ce14ed32a2 671 Pfam PF00271 Helicase conserved C-terminal domain 432 543 1.6E-17 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS19430 d707e46f909f102e635222ce14ed32a2 671 Pfam PF02151 UvrB/uvrC motif 633 666 1.5E-8 T 22-04-2016 IPR001943 UVR domain GO:0005515 PP4_RS19430 d707e46f909f102e635222ce14ed32a2 671 Pfam PF12344 Ultra-violet resistance protein B 550 591 1.6E-21 T 22-04-2016 IPR024759 UvrB, YAD/RRR-motif-containing domain PP4_RS19430 d707e46f909f102e635222ce14ed32a2 671 SMART SM00487 8 424 4.6E-28 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PP4_RS19430 d707e46f909f102e635222ce14ed32a2 671 Gene3D G3DSA:3.30.2060.10 159 232 3.0E-9 T 22-04-2016 PP4_RS19430 d707e46f909f102e635222ce14ed32a2 671 Hamap MF_00204 UvrABC system protein B [uvrB]. 2 667 43.692 T 22-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 PP4_RS19430 d707e46f909f102e635222ce14ed32a2 671 PANTHER PTHR24029 1 669 0.0 T 22-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 PP4_RS19430 d707e46f909f102e635222ce14ed32a2 671 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 3 665 0.0 T 22-04-2016 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006281|GO:0006289|GO:0009381|GO:0009432 PP4_RS19430 d707e46f909f102e635222ce14ed32a2 671 Pfam PF04851 Type III restriction enzyme, res subunit 11 96 2.2E-9 T 22-04-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 PP4_RS19430 d707e46f909f102e635222ce14ed32a2 671 SUPERFAMILY SSF46600 623 668 1.09E-11 T 22-04-2016 IPR001943 UVR domain GO:0005515 PP4_RS19430 d707e46f909f102e635222ce14ed32a2 671 Gene3D G3DSA:3.40.50.300 387 408 7.0E-54 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS19430 d707e46f909f102e635222ce14ed32a2 671 Gene3D G3DSA:3.40.50.300 5 88 7.0E-54 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS19430 d707e46f909f102e635222ce14ed32a2 671 Gene3D G3DSA:3.40.50.300 277 337 7.0E-54 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS19430 d707e46f909f102e635222ce14ed32a2 671 Gene3D G3DSA:4.10.860.10 627 669 7.5E-18 T 22-04-2016 IPR001943 UVR domain GO:0005515 PP4_RS19430 d707e46f909f102e635222ce14ed32a2 671 Gene3D G3DSA:3.40.50.300 418 578 3.4E-38 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS19430 d707e46f909f102e635222ce14ed32a2 671 SUPERFAMILY SSF52540 3 413 4.59E-139 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS06565 77c8ff95b82bcec11e1b7fb32142409e 311 Pfam PF03547 Membrane transport protein 4 146 4.3E-11 T 22-04-2016 IPR004776 Auxin efflux carrier GO:0016021|GO:0055085 PP4_RS06565 77c8ff95b82bcec11e1b7fb32142409e 311 Pfam PF03547 Membrane transport protein 160 301 2.7E-14 T 22-04-2016 IPR004776 Auxin efflux carrier GO:0016021|GO:0055085 PP4_RS06565 77c8ff95b82bcec11e1b7fb32142409e 311 PANTHER PTHR36838 1 310 9.0E-33 T 22-04-2016 PP4_RS19300 37e122d4ffcb68f4f2fc4b727fb4bded 297 TIGRFAM TIGR00515 accD: acetyl-CoA carboxylase, carboxyl transferase, beta subunit 15 284 2.8E-129 T 22-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PP4_RS19300 37e122d4ffcb68f4f2fc4b727fb4bded 297 Hamap MF_01395 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic [accD]. 2 283 37.655 T 22-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PP4_RS19300 37e122d4ffcb68f4f2fc4b727fb4bded 297 PANTHER PTHR22855:SF17 3 292 6.4E-161 T 22-04-2016 PP4_RS19300 37e122d4ffcb68f4f2fc4b727fb4bded 297 Pfam PF01039 Carboxyl transferase domain 104 242 2.0E-16 T 22-04-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PP4_RS19300 37e122d4ffcb68f4f2fc4b727fb4bded 297 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 231 242 6.6E-38 T 22-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PP4_RS19300 37e122d4ffcb68f4f2fc4b727fb4bded 297 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 165 183 6.6E-38 T 22-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PP4_RS19300 37e122d4ffcb68f4f2fc4b727fb4bded 297 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 131 145 6.6E-38 T 22-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PP4_RS19300 37e122d4ffcb68f4f2fc4b727fb4bded 297 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 253 262 6.6E-38 T 22-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PP4_RS19300 37e122d4ffcb68f4f2fc4b727fb4bded 297 PRINTS PR01070 Acetyl-CoA carboxylase carboxyl transferase beta subunit signature 202 219 6.6E-38 T 22-04-2016 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PP4_RS19300 37e122d4ffcb68f4f2fc4b727fb4bded 297 SUPERFAMILY SSF52096 27 285 3.11E-86 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS19300 37e122d4ffcb68f4f2fc4b727fb4bded 297 Gene3D G3DSA:3.90.226.10 20 282 5.7E-70 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS19300 37e122d4ffcb68f4f2fc4b727fb4bded 297 PANTHER PTHR22855 3 292 6.4E-161 T 22-04-2016 PP4_RS06770 bd719d2868ece804eba82675d59c84ba 1006 SUPERFAMILY SSF46548 556 617 1.7E-6 T 22-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 PP4_RS06770 bd719d2868ece804eba82675d59c84ba 1006 SUPERFAMILY SSF46548 646 683 1.7E-6 T 22-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 PP4_RS06770 bd719d2868ece804eba82675d59c84ba 1006 Gene3D G3DSA:3.30.43.10 7 108 3.5E-22 T 22-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 PP4_RS06770 bd719d2868ece804eba82675d59c84ba 1006 SUPERFAMILY SSF55103 259 537 1.37E-49 T 22-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 PP4_RS06770 bd719d2868ece804eba82675d59c84ba 1006 SUPERFAMILY SSF56176 248 280 2.43E-48 T 22-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 PP4_RS06770 bd719d2868ece804eba82675d59c84ba 1006 SUPERFAMILY SSF56176 6 191 2.43E-48 T 22-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 PP4_RS06770 bd719d2868ece804eba82675d59c84ba 1006 Pfam PF02913 FAD linked oxidases, C-terminal domain 279 533 4.2E-59 T 22-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 PP4_RS06770 bd719d2868ece804eba82675d59c84ba 1006 Gene3D G3DSA:3.30.465.10 109 280 2.4E-37 T 22-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 PP4_RS06770 bd719d2868ece804eba82675d59c84ba 1006 Gene3D G3DSA:1.10.1060.10 646 691 1.2E-13 T 22-04-2016 PP4_RS06770 bd719d2868ece804eba82675d59c84ba 1006 Gene3D G3DSA:1.10.1060.10 511 614 1.2E-13 T 22-04-2016 PP4_RS06770 bd719d2868ece804eba82675d59c84ba 1006 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 665 676 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PP4_RS06770 bd719d2868ece804eba82675d59c84ba 1006 PANTHER PTHR11748 247 582 3.0E-137 T 22-04-2016 PP4_RS06770 bd719d2868ece804eba82675d59c84ba 1006 PANTHER PTHR11748 16 193 3.0E-137 T 22-04-2016 PP4_RS06770 bd719d2868ece804eba82675d59c84ba 1006 Pfam PF01565 FAD binding domain 51 189 6.4E-35 T 22-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 PP4_RS06770 bd719d2868ece804eba82675d59c84ba 1006 PANTHER PTHR11748:SF35 247 582 3.0E-137 T 22-04-2016 PP4_RS06770 bd719d2868ece804eba82675d59c84ba 1006 PANTHER PTHR11748:SF35 16 193 3.0E-137 T 22-04-2016 PP4_RS06770 bd719d2868ece804eba82675d59c84ba 1006 Pfam PF13183 4Fe-4S dicluster domain 572 679 9.7E-12 T 22-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PP4_RS13560 5e1d943cccc5c65d93a7deb3346a3c35 352 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 189 334 4.9E-27 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS13560 5e1d943cccc5c65d93a7deb3346a3c35 352 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 118 1.3E-12 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS13560 5e1d943cccc5c65d93a7deb3346a3c35 352 Gene3D G3DSA:1.10.540.10 1 120 2.9E-17 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS13560 5e1d943cccc5c65d93a7deb3346a3c35 352 PANTHER PTHR10909:SF302 1 315 1.2E-37 T 22-04-2016 PP4_RS13560 5e1d943cccc5c65d93a7deb3346a3c35 352 Gene3D G3DSA:1.20.140.10 190 333 2.6E-34 T 22-04-2016 PP4_RS13560 5e1d943cccc5c65d93a7deb3346a3c35 352 SUPERFAMILY SSF56645 1 125 4.45E-19 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 PP4_RS13560 5e1d943cccc5c65d93a7deb3346a3c35 352 SUPERFAMILY SSF47203 189 338 5.8E-38 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS13560 5e1d943cccc5c65d93a7deb3346a3c35 352 PANTHER PTHR10909 1 315 1.2E-37 T 22-04-2016 PP4_RS22430 dc9ff3c20ce1e90435800af0176a5b6a 269 Gene3D G3DSA:3.40.50.300 8 240 8.2E-50 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS22430 dc9ff3c20ce1e90435800af0176a5b6a 269 SUPERFAMILY SSF52540 7 239 1.33E-46 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS22430 dc9ff3c20ce1e90435800af0176a5b6a 269 PANTHER PTHR24220 9 250 9.8E-77 T 22-04-2016 PP4_RS22430 dc9ff3c20ce1e90435800af0176a5b6a 269 PANTHER PTHR24220:SF408 9 250 9.8E-77 T 22-04-2016 PP4_RS22430 dc9ff3c20ce1e90435800af0176a5b6a 269 SMART SM00382 32 228 1.6E-10 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS22430 dc9ff3c20ce1e90435800af0176a5b6a 269 Pfam PF00005 ABC transporter 23 178 3.1E-27 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS22430 dc9ff3c20ce1e90435800af0176a5b6a 269 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS15885 923abf034eb7df554b3914c9f9863028 387 Pfam PF00465 Iron-containing alcohol dehydrogenase 15 379 2.3E-113 T 22-04-2016 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 PP4_RS15885 923abf034eb7df554b3914c9f9863028 387 PANTHER PTHR11496 12 386 1.2E-140 T 22-04-2016 PP4_RS15885 923abf034eb7df554b3914c9f9863028 387 PANTHER PTHR11496:SF79 12 386 1.2E-140 T 22-04-2016 PP4_RS15885 923abf034eb7df554b3914c9f9863028 387 Gene3D G3DSA:1.20.1090.10 189 386 2.8E-60 T 22-04-2016 PP4_RS15885 923abf034eb7df554b3914c9f9863028 387 Gene3D G3DSA:3.40.50.1970 12 187 5.6E-56 T 22-04-2016 PP4_RS15885 923abf034eb7df554b3914c9f9863028 387 ProSitePatterns PS00060 Iron-containing alcohol dehydrogenases signature 2. 264 284 - T 22-04-2016 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 PP4_RS15885 923abf034eb7df554b3914c9f9863028 387 SUPERFAMILY SSF56796 11 384 5.63E-118 T 22-04-2016 PP4_RS05675 7cc3c8b9683b5d9a509ed83b8743bc31 175 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 27 153 7.4E-26 T 22-04-2016 IPR007387 Tripartite ATP-independent periplasmic transporter, DctQ component PP4_RS05675 7cc3c8b9683b5d9a509ed83b8743bc31 175 PANTHER PTHR35011:SF2 4 163 3.1E-36 T 22-04-2016 PP4_RS05675 7cc3c8b9683b5d9a509ed83b8743bc31 175 PANTHER PTHR35011 4 163 3.1E-36 T 22-04-2016 PP4_RS06585 2233bffec6f4ddf6cc0ba7193af55813 98 SUPERFAMILY SSF47413 28 89 4.13E-8 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS06585 2233bffec6f4ddf6cc0ba7193af55813 98 TIGRFAM TIGR02684 dnstrm_HI1420: probable addiction module antidote protein 5 91 2.6E-35 T 22-04-2016 IPR014057 Addiction module antidote protein, HI1420 PP4_RS06585 2233bffec6f4ddf6cc0ba7193af55813 98 Gene3D G3DSA:1.10.260.40 49 90 3.2E-6 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS06585 2233bffec6f4ddf6cc0ba7193af55813 98 PANTHER PTHR40275 1 97 4.9E-22 T 22-04-2016 PP4_RS06585 2233bffec6f4ddf6cc0ba7193af55813 98 PANTHER PTHR40275:SF1 1 97 4.9E-22 T 22-04-2016 PP4_RS12865 fc5bd7bdc59ad2b7d117f99edfeefc17 443 PANTHER PTHR24064:SF234 4 423 4.0E-80 T 22-04-2016 PP4_RS12865 fc5bd7bdc59ad2b7d117f99edfeefc17 443 Gene3D G3DSA:1.20.1250.20 255 434 1.2E-21 T 22-04-2016 PP4_RS12865 fc5bd7bdc59ad2b7d117f99edfeefc17 443 SUPERFAMILY SSF103473 6 429 4.71E-82 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS12865 fc5bd7bdc59ad2b7d117f99edfeefc17 443 ProSitePatterns PS00217 Sugar transport proteins signature 2. 118 143 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PP4_RS12865 fc5bd7bdc59ad2b7d117f99edfeefc17 443 Gene3D G3DSA:1.20.1250.20 16 198 5.5E-35 T 22-04-2016 PP4_RS12865 fc5bd7bdc59ad2b7d117f99edfeefc17 443 PANTHER PTHR24064 4 423 4.0E-80 T 22-04-2016 PP4_RS12865 fc5bd7bdc59ad2b7d117f99edfeefc17 443 Pfam PF07690 Major Facilitator Superfamily 28 335 3.3E-38 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS18220 a50f0547fb9f9b09319478fe8c64f8f8 321 PANTHER PTHR11358 4 313 3.2E-97 T 22-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 PP4_RS18220 a50f0547fb9f9b09319478fe8c64f8f8 321 PIRSF PIRSF036979 21 315 1.6E-96 T 22-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 PP4_RS18220 a50f0547fb9f9b09319478fe8c64f8f8 321 Gene3D G3DSA:3.40.800.10 21 316 9.5E-109 T 22-04-2016 IPR023696 Ureohydrolase domain PP4_RS18220 a50f0547fb9f9b09319478fe8c64f8f8 321 SUPERFAMILY SSF52768 23 313 1.15E-96 T 22-04-2016 PP4_RS18220 a50f0547fb9f9b09319478fe8c64f8f8 321 ProSitePatterns PS01053 Arginase family signature. 239 260 - T 22-04-2016 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 Reactome: REACT_13 PP4_RS18220 a50f0547fb9f9b09319478fe8c64f8f8 321 Pfam PF00491 Arginase family 44 308 2.6E-90 T 22-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 PP4_RS18220 a50f0547fb9f9b09319478fe8c64f8f8 321 TIGRFAM TIGR01230 agmatinase: agmatinase 43 309 8.8E-74 T 22-04-2016 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|UniPathway: UPA00534 PP4_RS13035 4fb5369a1b1d03c2301f011967faa2a6 297 Pfam PF01758 Sodium Bile acid symporter family 12 195 1.8E-34 T 22-04-2016 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 PP4_RS13035 4fb5369a1b1d03c2301f011967faa2a6 297 PANTHER PTHR10361:SF24 1 278 5.1E-141 T 22-04-2016 PP4_RS13035 4fb5369a1b1d03c2301f011967faa2a6 297 PANTHER PTHR10361 1 278 5.1E-141 T 22-04-2016 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 PP4_RS27355 5cf281ba007a8c30cbe91a43ed6a0da5 258 SUPERFAMILY SSF46785 7 64 4.56E-13 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS27355 5cf281ba007a8c30cbe91a43ed6a0da5 258 Pfam PF08220 DeoR-like helix-turn-helix domain 9 60 1.2E-15 T 22-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 PP4_RS27355 5cf281ba007a8c30cbe91a43ed6a0da5 258 SMART SM01134 72 233 6.8E-55 T 22-04-2016 PP4_RS27355 5cf281ba007a8c30cbe91a43ed6a0da5 258 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 41 59 1.2E-5 T 22-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 PP4_RS27355 5cf281ba007a8c30cbe91a43ed6a0da5 258 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 27 41 1.2E-5 T 22-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 PP4_RS27355 5cf281ba007a8c30cbe91a43ed6a0da5 258 SMART SM00420 9 61 2.1E-14 T 22-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 PP4_RS27355 5cf281ba007a8c30cbe91a43ed6a0da5 258 SUPERFAMILY SSF100950 76 233 3.35E-31 T 22-04-2016 PP4_RS27355 5cf281ba007a8c30cbe91a43ed6a0da5 258 ProSitePatterns PS00894 DeoR-type HTH domain signature. 9 43 - T 22-04-2016 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 PP4_RS27355 5cf281ba007a8c30cbe91a43ed6a0da5 258 PANTHER PTHR30363 3 257 1.7E-148 T 22-04-2016 PP4_RS27355 5cf281ba007a8c30cbe91a43ed6a0da5 258 PANTHER PTHR30363:SF15 3 257 1.7E-148 T 22-04-2016 PP4_RS27355 5cf281ba007a8c30cbe91a43ed6a0da5 258 Gene3D G3DSA:1.10.10.10 5 53 2.2E-9 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS27355 5cf281ba007a8c30cbe91a43ed6a0da5 258 Pfam PF00455 DeoR C terminal sensor domain 77 232 2.9E-41 T 22-04-2016 IPR014036 DeoR C-terminal sensor domain PP4_RS27355 5cf281ba007a8c30cbe91a43ed6a0da5 258 Gene3D G3DSA:3.40.50.1360 75 221 1.4E-15 T 22-04-2016 PP4_RS16360 2bba71d2e4d0bd1307104a3b7c0f5a4a 964 SMART SM00304 373 426 0.0077 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS16360 2bba71d2e4d0bd1307104a3b7c0f5a4a 964 SUPERFAMILY SSF103190 179 242 5.1E-7 T 22-04-2016 IPR029151 Periplasmic sensor domain-like PP4_RS16360 2bba71d2e4d0bd1307104a3b7c0f5a4a 964 SMART SM00471 579 895 1.7E-4 T 22-04-2016 IPR003607 HD/PDEase domain PP4_RS16360 2bba71d2e4d0bd1307104a3b7c0f5a4a 964 Gene3D G3DSA:3.30.450.40 421 564 1.3E-6 T 22-04-2016 IPR029016 GAF domain-like PP4_RS16360 2bba71d2e4d0bd1307104a3b7c0f5a4a 964 SUPERFAMILY SSF109604 563 678 2.42E-7 T 22-04-2016 PP4_RS16360 2bba71d2e4d0bd1307104a3b7c0f5a4a 964 Pfam PF13487 HD domain 812 877 1.3E-20 T 22-04-2016 PP4_RS16360 2bba71d2e4d0bd1307104a3b7c0f5a4a 964 Gene3D G3DSA:1.10.3210.10 568 648 4.7E-7 T 22-04-2016 IPR006674 HD domain PP4_RS16360 2bba71d2e4d0bd1307104a3b7c0f5a4a 964 SUPERFAMILY SSF55781 436 564 1.24E-9 T 22-04-2016 IPR029016 GAF domain-like PP4_RS16360 2bba71d2e4d0bd1307104a3b7c0f5a4a 964 SUPERFAMILY SSF109604 814 921 8.79E-6 T 22-04-2016 PP4_RS16360 2bba71d2e4d0bd1307104a3b7c0f5a4a 964 Gene3D G3DSA:3.30.450.20 94 225 1.7E-18 T 22-04-2016 PP4_RS16360 2bba71d2e4d0bd1307104a3b7c0f5a4a 964 Gene3D G3DSA:3.30.450.20 226 350 2.3E-7 T 22-04-2016 PP4_RS17320 f89048875e96a88a611a44b57f4d74e4 236 SUPERFAMILY SSF52172 3 119 8.97E-38 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS17320 f89048875e96a88a611a44b57f4d74e4 236 SMART SM00862 153 229 3.2E-23 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS17320 f89048875e96a88a611a44b57f4d74e4 236 SMART SM00448 2 112 1.2E-38 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS17320 f89048875e96a88a611a44b57f4d74e4 236 PANTHER PTHR26402 2 234 1.1E-85 T 22-04-2016 PP4_RS17320 f89048875e96a88a611a44b57f4d74e4 236 SUPERFAMILY SSF46894 128 230 2.49E-25 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS17320 f89048875e96a88a611a44b57f4d74e4 236 Gene3D G3DSA:3.40.50.2300 3 121 9.4E-38 T 22-04-2016 PP4_RS17320 f89048875e96a88a611a44b57f4d74e4 236 Pfam PF00486 Transcriptional regulatory protein, C terminal 156 229 3.3E-21 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS17320 f89048875e96a88a611a44b57f4d74e4 236 PANTHER PTHR26402:SF292 2 234 1.1E-85 T 22-04-2016 PP4_RS17320 f89048875e96a88a611a44b57f4d74e4 236 Pfam PF00072 Response regulator receiver domain 5 113 1.2E-28 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS17320 f89048875e96a88a611a44b57f4d74e4 236 Gene3D G3DSA:1.10.10.10 129 232 4.8E-28 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS07390 fd084c0a0a34f9ae224bbe17a306f987 178 ProSitePatterns PS00194 Thioredoxin family active site. 65 83 - T 22-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 PP4_RS07390 fd084c0a0a34f9ae224bbe17a306f987 178 PANTHER PTHR10681:SF107 1 172 4.6E-56 T 22-04-2016 PP4_RS07390 fd084c0a0a34f9ae224bbe17a306f987 178 Gene3D G3DSA:3.40.30.10 8 170 1.6E-41 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS07390 fd084c0a0a34f9ae224bbe17a306f987 178 SUPERFAMILY SSF52833 41 171 4.23E-38 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS07390 fd084c0a0a34f9ae224bbe17a306f987 178 Pfam PF08534 Redoxin 37 157 6.0E-22 T 22-04-2016 IPR013740 Redoxin GO:0016491 PP4_RS07390 fd084c0a0a34f9ae224bbe17a306f987 178 TIGRFAM TIGR00385 dsbE: periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily 6 169 1.6E-57 T 22-04-2016 IPR004799 Periplasmic protein thiol:disulphide oxidoreductase DsbE GO:0015036|GO:0017004|GO:0030288 PP4_RS07390 fd084c0a0a34f9ae224bbe17a306f987 178 PANTHER PTHR10681 1 172 4.6E-56 T 22-04-2016 PP4_RS02080 1759732414439718fd1e1336404897e9 762 Gene3D G3DSA:3.30.830.10 5 211 5.0E-41 T 22-04-2016 IPR011237 Peptidase M16 domain GO:0046872 PP4_RS02080 1759732414439718fd1e1336404897e9 762 SUPERFAMILY SSF63411 578 745 3.91E-17 T 22-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 PP4_RS02080 1759732414439718fd1e1336404897e9 762 PANTHER PTHR11851:SF155 6 207 1.1E-40 T 22-04-2016 PP4_RS02080 1759732414439718fd1e1336404897e9 762 SUPERFAMILY SSF63411 5 211 3.86E-38 T 22-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 PP4_RS02080 1759732414439718fd1e1336404897e9 762 TIGRFAM TIGR02110 PQQ_syn_pqqF: coenzyme PQQ biosynthesis protein PqqF 6 675 3.4E-179 T 22-04-2016 IPR011844 Coenzyme PQQ biosynthesis protein PqqF GO:0004222|GO:0006508|GO:0008270|GO:0018189 UniPathway: UPA00539 PP4_RS02080 1759732414439718fd1e1336404897e9 762 Pfam PF00675 Insulinase (Peptidase family M16) 17 140 4.5E-32 T 22-04-2016 IPR011765 Peptidase M16, N-terminal PP4_RS02080 1759732414439718fd1e1336404897e9 762 ProSitePatterns PS00143 Insulinase family, zinc-binding region signature. 36 59 - T 22-04-2016 IPR001431 Peptidase M16, zinc-binding site GO:0004222|GO:0006508 PP4_RS02080 1759732414439718fd1e1336404897e9 762 Gene3D G3DSA:3.30.830.10 604 675 9.2E-15 T 22-04-2016 IPR011237 Peptidase M16 domain GO:0046872 PP4_RS02080 1759732414439718fd1e1336404897e9 762 PANTHER PTHR11851 6 207 1.1E-40 T 22-04-2016 PP4_RS16355 af008490f10427bb3cf5eae0db222974 570 PANTHER PTHR11632 7 134 7.6E-200 T 22-04-2016 PP4_RS16355 af008490f10427bb3cf5eae0db222974 570 PANTHER PTHR11632 204 473 7.6E-200 T 22-04-2016 PP4_RS16355 af008490f10427bb3cf5eae0db222974 570 PANTHER PTHR11632 489 564 7.6E-200 T 22-04-2016 PP4_RS16355 af008490f10427bb3cf5eae0db222974 570 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 264 278 8.4E-9 T 22-04-2016 PP4_RS16355 af008490f10427bb3cf5eae0db222974 570 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 423 443 8.4E-9 T 22-04-2016 PP4_RS16355 af008490f10427bb3cf5eae0db222974 570 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 11 33 8.4E-9 T 22-04-2016 PP4_RS16355 af008490f10427bb3cf5eae0db222974 570 SUPERFAMILY SSF56425 341 508 4.19E-35 T 22-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain PP4_RS16355 af008490f10427bb3cf5eae0db222974 570 Pfam PF00890 FAD binding domain 11 549 2.4E-117 T 22-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain PP4_RS16355 af008490f10427bb3cf5eae0db222974 570 SUPERFAMILY SSF51905 3 122 3.04E-45 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS16355 af008490f10427bb3cf5eae0db222974 570 SUPERFAMILY SSF51905 507 565 3.04E-45 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS16355 af008490f10427bb3cf5eae0db222974 570 SUPERFAMILY SSF51905 193 349 3.04E-45 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS16355 af008490f10427bb3cf5eae0db222974 570 Gene3D G3DSA:3.50.50.60 6 147 1.1E-67 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS16355 af008490f10427bb3cf5eae0db222974 570 Gene3D G3DSA:3.50.50.60 211 319 1.1E-67 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS16355 af008490f10427bb3cf5eae0db222974 570 Gene3D G3DSA:3.50.50.60 504 565 1.1E-67 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS16355 af008490f10427bb3cf5eae0db222974 570 PANTHER PTHR11632:SF59 7 134 7.6E-200 T 22-04-2016 PP4_RS16355 af008490f10427bb3cf5eae0db222974 570 PANTHER PTHR11632:SF59 204 473 7.6E-200 T 22-04-2016 PP4_RS16355 af008490f10427bb3cf5eae0db222974 570 PANTHER PTHR11632:SF59 489 564 7.6E-200 T 22-04-2016 PP4_RS16355 af008490f10427bb3cf5eae0db222974 570 Gene3D G3DSA:3.90.700.10 344 500 2.0E-31 T 22-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain PP4_RS18755 f02a87ef18cdfb3243014fbae98b37bd 179 PIRSF PIRSF006443 1 167 5.9E-64 T 22-04-2016 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 UniPathway: UPA00344 PP4_RS18755 f02a87ef18cdfb3243014fbae98b37bd 179 SUPERFAMILY SSF53218 8 169 1.57E-45 T 22-04-2016 IPR001453 MoaB/Mog domain PP4_RS18755 f02a87ef18cdfb3243014fbae98b37bd 179 Pfam PF00994 Probable molybdopterin binding domain 15 156 1.5E-31 T 22-04-2016 IPR001453 MoaB/Mog domain PP4_RS18755 f02a87ef18cdfb3243014fbae98b37bd 179 PANTHER PTHR10192 5 174 2.0E-93 T 22-04-2016 PP4_RS18755 f02a87ef18cdfb3243014fbae98b37bd 179 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 12 152 1.3E-30 T 22-04-2016 IPR001453 MoaB/Mog domain PP4_RS18755 f02a87ef18cdfb3243014fbae98b37bd 179 PANTHER PTHR10192:SF18 5 174 2.0E-93 T 22-04-2016 PP4_RS18755 f02a87ef18cdfb3243014fbae98b37bd 179 Gene3D G3DSA:3.40.980.10 9 171 2.0E-46 T 22-04-2016 IPR001453 MoaB/Mog domain PP4_RS18755 f02a87ef18cdfb3243014fbae98b37bd 179 SMART SM00852 15 159 3.3E-29 T 22-04-2016 IPR001453 MoaB/Mog domain PP4_RS18755 f02a87ef18cdfb3243014fbae98b37bd 179 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 73 86 - T 22-04-2016 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 UniPathway: UPA00344 PP4_RS18755 f02a87ef18cdfb3243014fbae98b37bd 179 TIGRFAM TIGR02667 moaB_proteo: molybdenum cofactor biosynthesis protein B 9 170 4.4E-85 T 22-04-2016 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria GO:0006777 UniPathway: UPA00344 PP4_RS19090 c0dab615fae2d15631d7fce106b8a12b 714 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 137 153 4.6E-7 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PP4_RS19090 c0dab615fae2d15631d7fce106b8a12b 714 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 9 20 4.6E-7 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PP4_RS19090 c0dab615fae2d15631d7fce106b8a12b 714 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 106 119 4.6E-7 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PP4_RS19090 c0dab615fae2d15631d7fce106b8a12b 714 SUPERFAMILY SSF48179 505 695 3.74E-22 T 22-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PP4_RS19090 c0dab615fae2d15631d7fce106b8a12b 714 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 76 192 9.4E-14 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PP4_RS19090 c0dab615fae2d15631d7fce106b8a12b 714 SUPERFAMILY SSF56784 12 221 8.67E-44 T 22-04-2016 IPR023214 HAD-like domain PP4_RS19090 c0dab615fae2d15631d7fce106b8a12b 714 PANTHER PTHR18901:SF34 7 245 4.5E-47 T 22-04-2016 PP4_RS19090 c0dab615fae2d15631d7fce106b8a12b 714 Gene3D G3DSA:1.10.1040.10 505 669 1.6E-31 T 22-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PP4_RS19090 c0dab615fae2d15631d7fce106b8a12b 714 Gene3D G3DSA:3.40.50.720 338 424 6.6E-5 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS19090 c0dab615fae2d15631d7fce106b8a12b 714 PANTHER PTHR18901 7 245 4.5E-47 T 22-04-2016 PP4_RS19090 c0dab615fae2d15631d7fce106b8a12b 714 Pfam PF08125 Mannitol dehydrogenase C-terminal domain 498 667 4.2E-13 T 22-04-2016 IPR013118 Mannitol dehydrogenase, C-terminal GO:0016491|GO:0050662|GO:0055114 PP4_RS19090 c0dab615fae2d15631d7fce106b8a12b 714 Pfam PF13419 Haloacid dehalogenase-like hydrolase 13 191 3.5E-30 T 22-04-2016 IPR023214 HAD-like domain PP4_RS19090 c0dab615fae2d15631d7fce106b8a12b 714 Gene3D G3DSA:3.40.50.1000 71 225 9.6E-41 T 22-04-2016 IPR023214 HAD-like domain PP4_RS18585 96c89c685caac8bc73ad0e95181b1cad 413 Pfam PF12704 MacB-like periplasmic core domain 27 241 6.5E-20 T 22-04-2016 IPR025857 MacB-like periplasmic core domain PP4_RS18585 96c89c685caac8bc73ad0e95181b1cad 413 Pfam PF02687 FtsX-like permease family 274 407 4.1E-20 T 22-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 PP4_RS18585 96c89c685caac8bc73ad0e95181b1cad 413 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 4 409 9.9E-147 T 22-04-2016 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 PP4_RS18585 96c89c685caac8bc73ad0e95181b1cad 413 PANTHER PTHR30489:SF8 1 411 2.0E-103 T 22-04-2016 PP4_RS18585 96c89c685caac8bc73ad0e95181b1cad 413 PANTHER PTHR30489 1 411 2.0E-103 T 22-04-2016 PP4_RS25280 30a0a2cdee215cb2540fb5e7fee3265c 439 PANTHER PTHR30624 20 432 3.6E-89 T 22-04-2016 PP4_RS25280 30a0a2cdee215cb2540fb5e7fee3265c 439 PANTHER PTHR30624:SF8 20 432 3.6E-89 T 22-04-2016 PP4_RS25280 30a0a2cdee215cb2540fb5e7fee3265c 439 Pfam PF01523 Putative modulator of DNA gyrase 26 295 3.0E-20 T 22-04-2016 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PP4_RS25280 30a0a2cdee215cb2540fb5e7fee3265c 439 SUPERFAMILY SSF111283 13 438 1.31E-68 T 22-04-2016 PP4_RS26970 a75e685a03f0f32e085ae654c8a7c173 259 Gene3D G3DSA:3.60.10.10 1 254 2.0E-63 T 22-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase PP4_RS26970 a75e685a03f0f32e085ae654c8a7c173 259 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 253 1.1E-56 T 22-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 PP4_RS26970 a75e685a03f0f32e085ae654c8a7c173 259 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 5 242 2.8E-9 T 22-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase PP4_RS26970 a75e685a03f0f32e085ae654c8a7c173 259 SUPERFAMILY SSF56219 1 254 9.03E-52 T 22-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase PP4_RS26970 a75e685a03f0f32e085ae654c8a7c173 259 PANTHER PTHR22748 1 257 3.9E-62 T 22-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 PP4_RS07370 ddfc0cdc1b695ebdf3daacac3f7eb496 255 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 48 65 2.3E-58 T 22-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 PP4_RS07370 ddfc0cdc1b695ebdf3daacac3f7eb496 255 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 103 123 2.3E-58 T 22-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 PP4_RS07370 ddfc0cdc1b695ebdf3daacac3f7eb496 255 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 124 144 2.3E-58 T 22-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 PP4_RS07370 ddfc0cdc1b695ebdf3daacac3f7eb496 255 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 65 85 2.3E-58 T 22-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 PP4_RS07370 ddfc0cdc1b695ebdf3daacac3f7eb496 255 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 159 185 2.3E-58 T 22-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 PP4_RS07370 ddfc0cdc1b695ebdf3daacac3f7eb496 255 PRINTS PR01386 Cytochrome c-type biogenesis protein CcmC signature 207 231 2.3E-58 T 22-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 PP4_RS07370 ddfc0cdc1b695ebdf3daacac3f7eb496 255 Pfam PF01578 Cytochrome C assembly protein 16 187 8.6E-27 T 22-04-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 PP4_RS07370 ddfc0cdc1b695ebdf3daacac3f7eb496 255 PANTHER PTHR30071 1 227 1.4E-75 T 22-04-2016 PP4_RS07370 ddfc0cdc1b695ebdf3daacac3f7eb496 255 TIGRFAM TIGR01191 ccmC: heme exporter protein CcmC 48 231 8.6E-83 T 22-04-2016 IPR003557 Cytochrome c-type biogenesis protein CcmC GO:0015232|GO:0015886|GO:0016020|GO:0017004 PP4_RS17310 80d98305039b9ca48fbe92323a33e417 154 SUPERFAMILY SSF54427 2 154 1.27E-79 T 22-04-2016 IPR032710 NTF2-like domain PP4_RS17310 80d98305039b9ca48fbe92323a33e417 154 PANTHER PTHR31757:SF0 1 154 1.1E-88 T 22-04-2016 PP4_RS17310 80d98305039b9ca48fbe92323a33e417 154 Pfam PF07080 Protein of unknown function (DUF1348) 3 144 1.6E-72 T 22-04-2016 IPR009783 Protein of unknown function DUF1348 PP4_RS17310 80d98305039b9ca48fbe92323a33e417 154 PANTHER PTHR31757 1 154 1.1E-88 T 22-04-2016 PP4_RS17310 80d98305039b9ca48fbe92323a33e417 154 Gene3D G3DSA:3.10.450.50 10 152 8.7E-75 T 22-04-2016 IPR032710 NTF2-like domain PP4_RS20580 8b3926552ad691b18d0b0116262545eb 309 SUPERFAMILY SSF46785 4 111 1.75E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS20580 8b3926552ad691b18d0b0116262545eb 309 Gene3D G3DSA:3.40.190.10 174 260 3.6E-19 T 22-04-2016 PP4_RS20580 8b3926552ad691b18d0b0116262545eb 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 3.6E-18 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS20580 8b3926552ad691b18d0b0116262545eb 309 Gene3D G3DSA:3.40.190.10 90 173 1.7E-8 T 22-04-2016 PP4_RS20580 8b3926552ad691b18d0b0116262545eb 309 PANTHER PTHR30537 1 308 7.3E-114 T 22-04-2016 PP4_RS20580 8b3926552ad691b18d0b0116262545eb 309 PANTHER PTHR30537:SF17 1 308 7.3E-114 T 22-04-2016 PP4_RS20580 8b3926552ad691b18d0b0116262545eb 309 SUPERFAMILY SSF53850 88 303 5.43E-42 T 22-04-2016 PP4_RS20580 8b3926552ad691b18d0b0116262545eb 309 Gene3D G3DSA:1.10.10.10 4 84 9.9E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS20580 8b3926552ad691b18d0b0116262545eb 309 Pfam PF03466 LysR substrate binding domain 88 299 4.5E-36 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS04485 73dce9af94f52840087c380c6e2099dc 1014 SUPERFAMILY SSF82693 650 698 8.37E-16 T 22-04-2016 PP4_RS04485 73dce9af94f52840087c380c6e2099dc 1014 Pfam PF00873 AcrB/AcrD/AcrF family 6 1002 1.2E-274 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS04485 73dce9af94f52840087c380c6e2099dc 1014 Gene3D G3DSA:1.10.3850.10 273 491 3.5E-62 T 22-04-2016 PP4_RS04485 73dce9af94f52840087c380c6e2099dc 1014 Gene3D G3DSA:3.30.2090.10 699 782 1.3E-16 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS04485 73dce9af94f52840087c380c6e2099dc 1014 Gene3D G3DSA:1.20.1640.10 823 1010 2.7E-46 T 22-04-2016 PP4_RS04485 73dce9af94f52840087c380c6e2099dc 1014 SUPERFAMILY SSF82866 291 490 1.01E-50 T 22-04-2016 PP4_RS04485 73dce9af94f52840087c380c6e2099dc 1014 SUPERFAMILY SSF82693 553 650 1.8E-19 T 22-04-2016 PP4_RS04485 73dce9af94f52840087c380c6e2099dc 1014 SUPERFAMILY SSF82714 183 265 8.37E-17 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS04485 73dce9af94f52840087c380c6e2099dc 1014 Gene3D G3DSA:3.30.70.1430 555 650 8.0E-13 T 22-04-2016 PP4_RS04485 73dce9af94f52840087c380c6e2099dc 1014 SUPERFAMILY SSF82693 785 832 8.37E-16 T 22-04-2016 PP4_RS04485 73dce9af94f52840087c380c6e2099dc 1014 SUPERFAMILY SSF82693 42 132 6.8E-21 T 22-04-2016 PP4_RS04485 73dce9af94f52840087c380c6e2099dc 1014 SUPERFAMILY SSF82714 699 783 4.45E-17 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS04485 73dce9af94f52840087c380c6e2099dc 1014 SUPERFAMILY SSF82693 267 323 8.89E-22 T 22-04-2016 PP4_RS04485 73dce9af94f52840087c380c6e2099dc 1014 SUPERFAMILY SSF82693 138 181 8.89E-22 T 22-04-2016 PP4_RS04485 73dce9af94f52840087c380c6e2099dc 1014 Gene3D G3DSA:3.30.70.1440 651 697 1.8E-8 T 22-04-2016 PP4_RS04485 73dce9af94f52840087c380c6e2099dc 1014 Gene3D G3DSA:3.30.70.1440 794 822 1.8E-8 T 22-04-2016 PP4_RS04485 73dce9af94f52840087c380c6e2099dc 1014 PANTHER PTHR32063 1 1010 0.0 T 22-04-2016 PP4_RS04485 73dce9af94f52840087c380c6e2099dc 1014 Gene3D G3DSA:3.30.70.1430 42 141 2.3E-24 T 22-04-2016 PP4_RS04485 73dce9af94f52840087c380c6e2099dc 1014 PANTHER PTHR32063:SF14 1 1010 0.0 T 22-04-2016 PP4_RS04485 73dce9af94f52840087c380c6e2099dc 1014 SUPERFAMILY SSF82866 808 1002 6.02E-44 T 22-04-2016 PP4_RS04485 73dce9af94f52840087c380c6e2099dc 1014 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 9.8E-76 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS04485 73dce9af94f52840087c380c6e2099dc 1014 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 9.8E-76 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS04485 73dce9af94f52840087c380c6e2099dc 1014 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 9.8E-76 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS04485 73dce9af94f52840087c380c6e2099dc 1014 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 9.8E-76 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS04485 73dce9af94f52840087c380c6e2099dc 1014 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 9.8E-76 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS04485 73dce9af94f52840087c380c6e2099dc 1014 PRINTS PR00702 Acriflavin resistance protein family signature 603 617 9.8E-76 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS04485 73dce9af94f52840087c380c6e2099dc 1014 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 9.8E-76 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS04485 73dce9af94f52840087c380c6e2099dc 1014 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 9.8E-76 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS04485 73dce9af94f52840087c380c6e2099dc 1014 PRINTS PR00702 Acriflavin resistance protein family signature 540 557 9.8E-76 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS04485 73dce9af94f52840087c380c6e2099dc 1014 Gene3D G3DSA:3.30.2090.10 183 268 2.2E-18 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS23490 6693497bbb354c1ce5c3995136928002 163 Gene3D G3DSA:3.30.70.260 1 78 9.4E-35 T 22-04-2016 PP4_RS23490 6693497bbb354c1ce5c3995136928002 163 Pfam PF13710 ACT domain 12 72 5.6E-15 T 22-04-2016 PP4_RS23490 6693497bbb354c1ce5c3995136928002 163 PANTHER PTHR30239 1 159 1.6E-89 T 22-04-2016 PP4_RS23490 6693497bbb354c1ce5c3995136928002 163 SUPERFAMILY SSF55021 1 75 2.96E-21 T 22-04-2016 PP4_RS23490 6693497bbb354c1ce5c3995136928002 163 SUPERFAMILY SSF55021 79 162 3.2E-26 T 22-04-2016 PP4_RS23490 6693497bbb354c1ce5c3995136928002 163 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 1 62 6.0E-30 T 22-04-2016 PP4_RS23490 6693497bbb354c1ce5c3995136928002 163 Pfam PF10369 Small subunit of acetolactate synthase 84 157 4.2E-26 T 22-04-2016 IPR019455 Acetolactate synthase, small subunit, C-terminal KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PP4_RS23490 6693497bbb354c1ce5c3995136928002 163 TIGRFAM TIGR00119 acolac_sm: acetolactate synthase, small subunit 1 158 1.9E-63 T 22-04-2016 IPR004789 Acetolactate synthase, small subunit GO:0003984|GO:0009082 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PP4_RS23490 6693497bbb354c1ce5c3995136928002 163 Gene3D G3DSA:3.30.70.1150 83 161 8.7E-30 T 22-04-2016 PP4_RS24995 540e21907b1bb4018a78dc3613227d78 393 SUPERFAMILY SSF117892 118 251 1.12E-22 T 22-04-2016 IPR001107 Band 7 domain PP4_RS24995 540e21907b1bb4018a78dc3613227d78 393 Gene3D G3DSA:1.20.5.620 269 297 4.1E-4 T 22-04-2016 IPR028987 F-type ATP synthase subunit B-like, membrane domain PP4_RS24995 540e21907b1bb4018a78dc3613227d78 393 Pfam PF12221 Bacterial membrane protein N terminal 1 53 7.2E-16 T 22-04-2016 IPR020980 Menbrane protein HflK, N-terminal PP4_RS24995 540e21907b1bb4018a78dc3613227d78 393 Pfam PF01145 SPFH domain / Band 7 family 90 261 4.8E-28 T 22-04-2016 IPR001107 Band 7 domain PP4_RS24995 540e21907b1bb4018a78dc3613227d78 393 TIGRFAM TIGR01933 hflK: HflK protein 88 349 9.2E-117 T 22-04-2016 IPR010201 HflK GO:0016021 PP4_RS24995 540e21907b1bb4018a78dc3613227d78 393 SMART SM00244 86 246 9.9E-32 T 22-04-2016 IPR001107 Band 7 domain PP4_RS24995 540e21907b1bb4018a78dc3613227d78 393 PANTHER PTHR10264 4 392 7.0E-153 T 22-04-2016 IPR001972 Stomatin family GO:0016020 PP4_RS24995 540e21907b1bb4018a78dc3613227d78 393 PRINTS PR00721 Stomatin signature 93 115 4.2E-6 T 22-04-2016 IPR001972 Stomatin family GO:0016020 PP4_RS24995 540e21907b1bb4018a78dc3613227d78 393 PRINTS PR00721 Stomatin signature 140 161 4.2E-6 T 22-04-2016 IPR001972 Stomatin family GO:0016020 PP4_RS24995 540e21907b1bb4018a78dc3613227d78 393 PRINTS PR00721 Stomatin signature 222 240 4.2E-6 T 22-04-2016 IPR001972 Stomatin family GO:0016020 PP4_RS24995 540e21907b1bb4018a78dc3613227d78 393 PANTHER PTHR10264:SF51 4 392 7.0E-153 T 22-04-2016 IPR010201 HflK GO:0016021 PP4_RS15610 83b49663ad32ed35c2ba759432673a97 313 Pfam PF01882 Protein of unknown function DUF58 50 134 4.4E-21 T 22-04-2016 IPR002881 Domain of unknown function DUF58 PP4_RS15610 83b49663ad32ed35c2ba759432673a97 313 PANTHER PTHR33608:SF6 15 313 2.5E-70 T 22-04-2016 PP4_RS15610 83b49663ad32ed35c2ba759432673a97 313 PANTHER PTHR33608 15 313 2.5E-70 T 22-04-2016 PP4_RS07130 cee74382460a82496ae85ab1a22996d6 609 SUPERFAMILY SSF52518 5 182 8.84E-49 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS07130 cee74382460a82496ae85ab1a22996d6 609 SUPERFAMILY SSF52467 163 362 1.29E-42 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain PP4_RS07130 cee74382460a82496ae85ab1a22996d6 609 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 6 180 1.5E-53 T 22-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 PP4_RS07130 cee74382460a82496ae85ab1a22996d6 609 PANTHER PTHR18968 4 602 9.7E-130 T 22-04-2016 PP4_RS07130 cee74382460a82496ae85ab1a22996d6 609 Gene3D G3DSA:3.40.50.1220 196 385 3.2E-44 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain PP4_RS07130 cee74382460a82496ae85ab1a22996d6 609 Gene3D G3DSA:3.40.50.970 386 582 1.8E-46 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS07130 cee74382460a82496ae85ab1a22996d6 609 Gene3D G3DSA:3.40.50.970 5 181 3.3E-61 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS07130 cee74382460a82496ae85ab1a22996d6 609 SUPERFAMILY SSF52518 369 590 1.61E-42 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS07130 cee74382460a82496ae85ab1a22996d6 609 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 201 337 5.8E-31 T 22-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 PP4_RS07130 cee74382460a82496ae85ab1a22996d6 609 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 410 550 3.7E-29 T 22-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 PP4_RS01625 b216c42666c4367f67cc2f86a3a71643 245 TIGRFAM TIGR00007 TIGR00007: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase 3 235 2.0E-78 T 22-04-2016 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16|UniPathway: UPA00031 PP4_RS01625 b216c42666c4367f67cc2f86a3a71643 245 PANTHER PTHR21235:SF15 1 242 4.2E-107 T 22-04-2016 PP4_RS01625 b216c42666c4367f67cc2f86a3a71643 245 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 2 239 35.944 T 22-04-2016 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16|UniPathway: UPA00031 PP4_RS01625 b216c42666c4367f67cc2f86a3a71643 245 Pfam PF00977 Histidine biosynthesis protein 3 231 3.7E-79 T 22-04-2016 IPR006062 Histidine biosynthesis GO:0000105 PP4_RS01625 b216c42666c4367f67cc2f86a3a71643 245 Gene3D G3DSA:3.20.20.70 1 240 7.7E-89 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS01625 b216c42666c4367f67cc2f86a3a71643 245 PANTHER PTHR21235 1 242 4.2E-107 T 22-04-2016 PP4_RS01625 b216c42666c4367f67cc2f86a3a71643 245 SUPERFAMILY SSF51366 1 240 1.57E-76 T 22-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 PP4_RS08425 70e12dc377407c53e22f9c1e22a43462 538 Pfam PF01384 Phosphate transporter family 82 527 8.9E-80 T 22-04-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 PP4_RS08425 70e12dc377407c53e22f9c1e22a43462 538 PANTHER PTHR11101 54 537 2.6E-284 T 22-04-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 PP4_RS08425 70e12dc377407c53e22f9c1e22a43462 538 PANTHER PTHR11101:SF61 54 537 2.6E-284 T 22-04-2016 PP4_RS01645 6bdaf2d7f50f45490908f869ffdff7ea 315 PANTHER PTHR30177 6 289 1.2E-137 T 22-04-2016 PP4_RS01645 6bdaf2d7f50f45490908f869ffdff7ea 315 TIGRFAM TIGR03414 ABC_choline_bnd: choline ABC transporter, periplasmic binding protein 21 313 1.2E-142 T 22-04-2016 IPR017783 ABC transporter, choline, substrate-binding protein GO:0015871|GO:0033265|GO:0042597 PP4_RS01645 6bdaf2d7f50f45490908f869ffdff7ea 315 PANTHER PTHR30177:SF6 6 289 1.2E-137 T 22-04-2016 PP4_RS01645 6bdaf2d7f50f45490908f869ffdff7ea 315 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 29 284 6.0E-53 T 22-04-2016 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 PP4_RS01645 6bdaf2d7f50f45490908f869ffdff7ea 315 SUPERFAMILY SSF53850 22 301 3.26E-82 T 22-04-2016 PP4_RS01645 6bdaf2d7f50f45490908f869ffdff7ea 315 Gene3D G3DSA:3.40.190.100 116 225 1.7E-19 T 22-04-2016 PP4_RS01645 6bdaf2d7f50f45490908f869ffdff7ea 315 Gene3D G3DSA:3.40.190.10 22 111 1.1E-44 T 22-04-2016 PP4_RS01645 6bdaf2d7f50f45490908f869ffdff7ea 315 Gene3D G3DSA:3.40.190.10 229 301 1.1E-44 T 22-04-2016 PP4_RS15265 c230b30c2192740240a0da368cf7f688 285 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 49 281 1.1E-60 T 22-04-2016 PP4_RS15265 c230b30c2192740240a0da368cf7f688 285 SUPERFAMILY SSF51735 41 281 2.49E-80 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS15265 c230b30c2192740240a0da368cf7f688 285 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 178 206 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PP4_RS15265 c230b30c2192740240a0da368cf7f688 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 246 266 6.5E-38 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15265 c230b30c2192740240a0da368cf7f688 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 119 130 6.5E-38 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15265 c230b30c2192740240a0da368cf7f688 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 181 6.5E-38 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15265 c230b30c2192740240a0da368cf7f688 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 229 6.5E-38 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15265 c230b30c2192740240a0da368cf7f688 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 191 210 6.5E-38 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15265 c230b30c2192740240a0da368cf7f688 285 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 44 61 6.5E-38 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15265 c230b30c2192740240a0da368cf7f688 285 PANTHER PTHR24322:SF105 47 175 8.0E-66 T 22-04-2016 PP4_RS15265 c230b30c2192740240a0da368cf7f688 285 PANTHER PTHR24322:SF105 191 223 8.0E-66 T 22-04-2016 PP4_RS15265 c230b30c2192740240a0da368cf7f688 285 Gene3D G3DSA:3.40.50.720 38 281 1.6E-82 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS15265 c230b30c2192740240a0da368cf7f688 285 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 119 130 6.6E-11 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15265 c230b30c2192740240a0da368cf7f688 285 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 171 179 6.6E-11 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15265 c230b30c2192740240a0da368cf7f688 285 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 191 210 6.6E-11 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15265 c230b30c2192740240a0da368cf7f688 285 PANTHER PTHR24322 47 175 8.0E-66 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15265 c230b30c2192740240a0da368cf7f688 285 PANTHER PTHR24322 191 223 8.0E-66 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS22565 28f3b6f6dcb3053ba82150dbb2cd4191 224 Gene3D G3DSA:1.10.10.10 125 220 3.8E-29 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS22565 28f3b6f6dcb3053ba82150dbb2cd4191 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 144 219 9.2E-24 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS22565 28f3b6f6dcb3053ba82150dbb2cd4191 224 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 3 219 7.5E-95 T 22-04-2016 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 PP4_RS22565 28f3b6f6dcb3053ba82150dbb2cd4191 224 SMART SM00862 144 219 8.2E-24 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS22565 28f3b6f6dcb3053ba82150dbb2cd4191 224 PANTHER PTHR26402:SF575 1 220 1.4E-148 T 22-04-2016 PP4_RS22565 28f3b6f6dcb3053ba82150dbb2cd4191 224 Pfam PF00072 Response regulator receiver domain 3 111 5.2E-24 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS22565 28f3b6f6dcb3053ba82150dbb2cd4191 224 SUPERFAMILY SSF52172 1 176 8.3E-40 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS22565 28f3b6f6dcb3053ba82150dbb2cd4191 224 PANTHER PTHR26402 1 220 1.4E-148 T 22-04-2016 PP4_RS22565 28f3b6f6dcb3053ba82150dbb2cd4191 224 SMART SM00448 1 111 1.3E-39 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS22565 28f3b6f6dcb3053ba82150dbb2cd4191 224 Gene3D G3DSA:3.40.50.2300 1 120 1.2E-37 T 22-04-2016 PP4_RS09415 cda8eb20f5e97320b93c6c628207cd0d 363 PANTHER PTHR24220 3 233 1.3E-98 T 22-04-2016 PP4_RS09415 cda8eb20f5e97320b93c6c628207cd0d 363 Gene3D G3DSA:3.40.50.300 19 226 2.1E-52 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS09415 cda8eb20f5e97320b93c6c628207cd0d 363 SUPERFAMILY SSF50331 240 361 7.05E-18 T 22-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal PP4_RS09415 cda8eb20f5e97320b93c6c628207cd0d 363 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS09415 cda8eb20f5e97320b93c6c628207cd0d 363 SMART SM00382 26 213 3.4E-12 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS09415 cda8eb20f5e97320b93c6c628207cd0d 363 SUPERFAMILY SSF52540 9 225 2.03E-58 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS09415 cda8eb20f5e97320b93c6c628207cd0d 363 PANTHER PTHR24220:SF284 3 233 1.3E-98 T 22-04-2016 PP4_RS09415 cda8eb20f5e97320b93c6c628207cd0d 363 Pfam PF00005 ABC transporter 20 163 7.8E-25 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS09415 cda8eb20f5e97320b93c6c628207cd0d 363 TIGRFAM TIGR02142 modC_ABC: molybdate ABC transporter, ATP-binding protein 7 361 2.3E-133 T 22-04-2016 IPR011868 Molybdate ABC transporter, ATP-binding protein GO:0005524|GO:0015098|GO:0015689|GO:0016020 PP4_RS09415 cda8eb20f5e97320b93c6c628207cd0d 363 Pfam PF03459 TOBE domain 299 361 2.2E-13 T 22-04-2016 IPR005116 Transport-associated OB, type 1 PP4_RS09415 cda8eb20f5e97320b93c6c628207cd0d 363 Gene3D G3DSA:2.40.50.100 286 359 8.5E-16 T 22-04-2016 PP4_RS23670 08a644ede72a3f7a96fd1b1b6f0fe8fc 493 Pfam PF13184 NusA-like KH domain 232 299 1.9E-26 T 22-04-2016 IPR025249 KH domain, NusA-like GO:0003723 PP4_RS23670 08a644ede72a3f7a96fd1b1b6f0fe8fc 493 PANTHER PTHR22648 1 450 1.8E-177 T 22-04-2016 PP4_RS23670 08a644ede72a3f7a96fd1b1b6f0fe8fc 493 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 442 491 5.6E-19 T 22-04-2016 IPR010214 Transcription termination factor NusA, C-terminal duplication PP4_RS23670 08a644ede72a3f7a96fd1b1b6f0fe8fc 493 TIGRFAM TIGR01954 nusA_Cterm_rpt: transcription termination factor NusA, C-terminal duplication 367 415 2.4E-20 T 22-04-2016 IPR010214 Transcription termination factor NusA, C-terminal duplication PP4_RS23670 08a644ede72a3f7a96fd1b1b6f0fe8fc 493 SMART SM00316 135 202 1.3E-11 T 22-04-2016 IPR022967 RNA-binding domain, S1 PP4_RS23670 08a644ede72a3f7a96fd1b1b6f0fe8fc 493 SUPERFAMILY SSF54814 202 280 2.09E-28 T 22-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 PP4_RS23670 08a644ede72a3f7a96fd1b1b6f0fe8fc 493 SUPERFAMILY SSF50249 134 201 1.96E-18 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS23670 08a644ede72a3f7a96fd1b1b6f0fe8fc 493 Pfam PF08529 NusA N-terminal domain 4 125 9.5E-37 T 22-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 PP4_RS23670 08a644ede72a3f7a96fd1b1b6f0fe8fc 493 Pfam PF14520 Helix-hairpin-helix domain 434 488 2.8E-7 T 22-04-2016 PP4_RS23670 08a644ede72a3f7a96fd1b1b6f0fe8fc 493 SUPERFAMILY SSF47794 357 418 3.14E-16 T 22-04-2016 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 PP4_RS23670 08a644ede72a3f7a96fd1b1b6f0fe8fc 493 Gene3D G3DSA:2.40.50.140 131 200 6.4E-24 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS23670 08a644ede72a3f7a96fd1b1b6f0fe8fc 493 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 2 412 29.224 T 22-04-2016 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 PP4_RS23670 08a644ede72a3f7a96fd1b1b6f0fe8fc 493 Gene3D G3DSA:1.10.150.20 359 422 3.5E-21 T 22-04-2016 PP4_RS23670 08a644ede72a3f7a96fd1b1b6f0fe8fc 493 Gene3D G3DSA:1.10.150.20 431 492 7.4E-22 T 22-04-2016 PP4_RS23670 08a644ede72a3f7a96fd1b1b6f0fe8fc 493 Gene3D G3DSA:3.30.300.20 201 279 3.6E-33 T 22-04-2016 IPR015946 K homology domain-like, alpha/beta PP4_RS23670 08a644ede72a3f7a96fd1b1b6f0fe8fc 493 SUPERFAMILY SSF69705 1 128 8.24E-39 T 22-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 PP4_RS23670 08a644ede72a3f7a96fd1b1b6f0fe8fc 493 PANTHER PTHR22648:SF0 1 450 1.8E-177 T 22-04-2016 PP4_RS23670 08a644ede72a3f7a96fd1b1b6f0fe8fc 493 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 5 344 8.8E-124 T 22-04-2016 IPR010213 Transcription termination factor NusA GO:0003723 PP4_RS23670 08a644ede72a3f7a96fd1b1b6f0fe8fc 493 Gene3D G3DSA:3.30.300.20 280 348 1.7E-27 T 22-04-2016 IPR015946 K homology domain-like, alpha/beta PP4_RS23670 08a644ede72a3f7a96fd1b1b6f0fe8fc 493 Gene3D G3DSA:3.30.1480.10 1 126 2.7E-44 T 22-04-2016 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 PP4_RS23670 08a644ede72a3f7a96fd1b1b6f0fe8fc 493 SUPERFAMILY SSF47794 432 492 2.35E-15 T 22-04-2016 IPR010995 DNA repair Rad51/transcription factor NusA, alpha-helical GO:0000166 PP4_RS23670 08a644ede72a3f7a96fd1b1b6f0fe8fc 493 Pfam PF00575 S1 RNA binding domain 135 197 1.2E-6 T 22-04-2016 IPR003029 S1 domain GO:0003676 PP4_RS23670 08a644ede72a3f7a96fd1b1b6f0fe8fc 493 SUPERFAMILY SSF54814 281 344 1.05E-14 T 22-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 PP4_RS13020 ce7488f24315ecaa44eb02acb183e1d8 169 PANTHER PTHR23091 55 138 3.7E-14 T 22-04-2016 PP4_RS13020 ce7488f24315ecaa44eb02acb183e1d8 169 PANTHER PTHR23091:SF240 55 138 3.7E-14 T 22-04-2016 PP4_RS13020 ce7488f24315ecaa44eb02acb183e1d8 169 Gene3D G3DSA:3.40.630.30 1 138 3.9E-23 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS13020 ce7488f24315ecaa44eb02acb183e1d8 169 Pfam PF00583 Acetyltransferase (GNAT) family 61 134 1.4E-13 T 22-04-2016 IPR000182 GNAT domain GO:0008080 PP4_RS13020 ce7488f24315ecaa44eb02acb183e1d8 169 SUPERFAMILY SSF55729 1 138 1.53E-24 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS26610 57d7e782d39b2cad1535fb77b8c2a6d0 134 PANTHER PTHR35091 15 134 1.2E-40 T 22-04-2016 PP4_RS26610 57d7e782d39b2cad1535fb77b8c2a6d0 134 PANTHER PTHR35091:SF1 15 134 1.2E-40 T 22-04-2016 PP4_RS26610 57d7e782d39b2cad1535fb77b8c2a6d0 134 Pfam PF03748 Flagellar basal body-associated protein FliL 31 134 9.5E-21 T 22-04-2016 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 PP4_RS26765 7a1184b88b3b1286c058c20f244784c5 496 SUPERFAMILY SSF54211 5 167 4.55E-32 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PP4_RS26765 7a1184b88b3b1286c058c20f244784c5 496 SMART SM00382 210 391 4.2E-6 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS26765 7a1184b88b3b1286c058c20f244784c5 496 Pfam PF13541 Subunit ChlI of Mg-chelatase 21 142 6.6E-43 T 22-04-2016 PP4_RS26765 7a1184b88b3b1286c058c20f244784c5 496 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 340 352 7.2E-6 T 22-04-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 PP4_RS26765 7a1184b88b3b1286c058c20f244784c5 496 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 288 302 7.2E-6 T 22-04-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 PP4_RS26765 7a1184b88b3b1286c058c20f244784c5 496 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 209 224 7.2E-6 T 22-04-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 PP4_RS26765 7a1184b88b3b1286c058c20f244784c5 496 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 316 329 7.2E-6 T 22-04-2016 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006260 PP4_RS26765 7a1184b88b3b1286c058c20f244784c5 496 PANTHER PTHR32039 1 492 4.4E-244 T 22-04-2016 PP4_RS26765 7a1184b88b3b1286c058c20f244784c5 496 PANTHER PTHR32039:SF7 1 492 4.4E-244 T 22-04-2016 IPR004482 Mg chelatase-related protein PP4_RS26765 7a1184b88b3b1286c058c20f244784c5 496 Pfam PF01078 Magnesium chelatase, subunit ChlI 190 391 4.4E-95 T 22-04-2016 IPR000523 Magnesium chelatase ChlI domain PP4_RS26765 7a1184b88b3b1286c058c20f244784c5 496 SUPERFAMILY SSF52540 187 493 1.21E-44 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26765 7a1184b88b3b1286c058c20f244784c5 496 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 6 492 7.1E-192 T 22-04-2016 IPR004482 Mg chelatase-related protein PP4_RS26765 7a1184b88b3b1286c058c20f244784c5 496 Gene3D G3DSA:3.30.230.10 5 167 9.0E-31 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PP4_RS26765 7a1184b88b3b1286c058c20f244784c5 496 Gene3D G3DSA:3.40.50.300 189 387 7.7E-50 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26765 7a1184b88b3b1286c058c20f244784c5 496 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 400 492 4.8E-29 T 22-04-2016 IPR025158 Mg chelatase-related protein, C-terminal domain PP4_RS17305 266daae886c21f6f683d6c7c795cf3ba 267 ProSitePatterns PS00062 Aldo/keto reductase family signature 2. 114 131 - T 22-04-2016 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 PP4_RS17305 266daae886c21f6f683d6c7c795cf3ba 267 PRINTS PR00069 Aldo-keto reductase signature 81 99 6.6E-47 T 22-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PP4_RS17305 266daae886c21f6f683d6c7c795cf3ba 267 PRINTS PR00069 Aldo-keto reductase signature 25 49 6.6E-47 T 22-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PP4_RS17305 266daae886c21f6f683d6c7c795cf3ba 267 PRINTS PR00069 Aldo-keto reductase signature 186 210 6.6E-47 T 22-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PP4_RS17305 266daae886c21f6f683d6c7c795cf3ba 267 PRINTS PR00069 Aldo-keto reductase signature 114 131 6.6E-47 T 22-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PP4_RS17305 266daae886c21f6f683d6c7c795cf3ba 267 PRINTS PR00069 Aldo-keto reductase signature 149 178 6.6E-47 T 22-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PP4_RS17305 266daae886c21f6f683d6c7c795cf3ba 267 PANTHER PTHR11732:SF100 1 267 2.7E-166 T 22-04-2016 PP4_RS17305 266daae886c21f6f683d6c7c795cf3ba 267 PIRSF PIRSF000097 1 265 3.1E-68 T 22-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PP4_RS17305 266daae886c21f6f683d6c7c795cf3ba 267 PANTHER PTHR11732 1 267 2.7E-166 T 22-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta PP4_RS17305 266daae886c21f6f683d6c7c795cf3ba 267 Gene3D G3DSA:3.20.20.100 1 258 8.5E-89 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain PP4_RS17305 266daae886c21f6f683d6c7c795cf3ba 267 Pfam PF00248 Aldo/keto reductase family 7 250 7.0E-50 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain PP4_RS17305 266daae886c21f6f683d6c7c795cf3ba 267 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 29 46 - T 22-04-2016 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 PP4_RS17305 266daae886c21f6f683d6c7c795cf3ba 267 SUPERFAMILY SSF51430 2 257 2.49E-81 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain PP4_RS25960 d6b86411c5d2ef784118bdbe912b6dc5 273 SMART SM00318 41 172 1.9E-11 T 22-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold PP4_RS25960 d6b86411c5d2ef784118bdbe912b6dc5 273 PANTHER PTHR12302:SF0 37 173 3.7E-28 T 22-04-2016 PP4_RS25960 d6b86411c5d2ef784118bdbe912b6dc5 273 PANTHER PTHR12302 37 173 3.7E-28 T 22-04-2016 PP4_RS25960 d6b86411c5d2ef784118bdbe912b6dc5 273 Gene3D G3DSA:2.40.50.90 39 140 1.1E-23 T 22-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold PP4_RS25960 d6b86411c5d2ef784118bdbe912b6dc5 273 ProSitePatterns PS01284 Thermonuclease family signature 2. 113 123 - T 22-04-2016 IPR002071 Thermonuclease active site GO:0003676|GO:0004518 PP4_RS25960 d6b86411c5d2ef784118bdbe912b6dc5 273 SUPERFAMILY SSF50199 35 176 9.94E-29 T 22-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold PP4_RS25960 d6b86411c5d2ef784118bdbe912b6dc5 273 Pfam PF00565 Staphylococcal nuclease homologue 64 171 1.5E-15 T 22-04-2016 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold PP4_RS05105 ab987172a0dda4ba6e4e2268aaa8e6f2 1426 Pfam PF08494 DEAD/H associated 636 838 1.1E-53 T 22-04-2016 IPR013701 DEAD/H associated GO:0005524|GO:0016818 PP4_RS05105 ab987172a0dda4ba6e4e2268aaa8e6f2 1426 Gene3D G3DSA:3.40.50.300 264 374 1.2E-30 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS05105 ab987172a0dda4ba6e4e2268aaa8e6f2 1426 SMART SM00490 291 371 5.0E-18 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS05105 ab987172a0dda4ba6e4e2268aaa8e6f2 1426 Pfam PF00270 DEAD/DEAH box helicase 30 216 1.3E-27 T 22-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 PP4_RS05105 ab987172a0dda4ba6e4e2268aaa8e6f2 1426 Gene3D G3DSA:1.10.10.10 991 1030 4.0E-4 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS05105 ab987172a0dda4ba6e4e2268aaa8e6f2 1426 PANTHER PTHR24031:SF336 1410 1416 7.3E-70 T 22-04-2016 PP4_RS05105 ab987172a0dda4ba6e4e2268aaa8e6f2 1426 PANTHER PTHR24031:SF336 412 463 7.3E-70 T 22-04-2016 PP4_RS05105 ab987172a0dda4ba6e4e2268aaa8e6f2 1426 PANTHER PTHR24031:SF336 18 389 7.3E-70 T 22-04-2016 PP4_RS05105 ab987172a0dda4ba6e4e2268aaa8e6f2 1426 PANTHER PTHR24031 1410 1416 7.3E-70 T 22-04-2016 PP4_RS05105 ab987172a0dda4ba6e4e2268aaa8e6f2 1426 PANTHER PTHR24031 412 463 7.3E-70 T 22-04-2016 PP4_RS05105 ab987172a0dda4ba6e4e2268aaa8e6f2 1426 PANTHER PTHR24031 18 389 7.3E-70 T 22-04-2016 PP4_RS05105 ab987172a0dda4ba6e4e2268aaa8e6f2 1426 Pfam PF00271 Helicase conserved C-terminal domain 270 371 3.5E-16 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS05105 ab987172a0dda4ba6e4e2268aaa8e6f2 1426 Gene3D G3DSA:3.40.50.300 18 214 5.8E-41 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS05105 ab987172a0dda4ba6e4e2268aaa8e6f2 1426 SMART SM00487 25 248 2.7E-30 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PP4_RS05105 ab987172a0dda4ba6e4e2268aaa8e6f2 1426 SUPERFAMILY SSF52540 38 375 5.21E-46 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS14660 2348bc21fd4d7eb40199f853c0d0e176 463 Pfam PF00324 Amino acid permease 16 426 1.5E-117 T 22-04-2016 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 PP4_RS14660 2348bc21fd4d7eb40199f853c0d0e176 463 PANTHER PTHR11785 6 450 7.3E-236 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS14660 2348bc21fd4d7eb40199f853c0d0e176 463 ProSitePatterns PS00218 Amino acid permeases signature. 41 71 - T 22-04-2016 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 PP4_RS14660 2348bc21fd4d7eb40199f853c0d0e176 463 TIGRFAM TIGR01773 GABAperm: GABA permease 6 449 2.4E-219 T 22-04-2016 IPR011265 GABA permease GO:0015185|GO:0015812|GO:0016021 PP4_RS14660 2348bc21fd4d7eb40199f853c0d0e176 463 PANTHER PTHR11785:SF24 6 450 7.3E-236 T 22-04-2016 PP4_RS14660 2348bc21fd4d7eb40199f853c0d0e176 463 PIRSF PIRSF006060 1 455 3.5E-70 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS23215 827cd88dd92fe25464b5b1ffbbd0fcd4 309 SUPERFAMILY SSF56327 145 303 4.18E-46 T 22-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 PP4_RS23215 827cd88dd92fe25464b5b1ffbbd0fcd4 309 Gene3D G3DSA:3.90.110.10 144 308 3.3E-50 T 22-04-2016 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal GO:0003824|GO:0005975|GO:0016616|GO:0055114 PP4_RS23215 827cd88dd92fe25464b5b1ffbbd0fcd4 309 PIRSF PIRSF000102 1 309 2.0E-91 T 22-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 PP4_RS23215 827cd88dd92fe25464b5b1ffbbd0fcd4 309 PANTHER PTHR11540:SF16 3 305 2.7E-106 T 22-04-2016 PP4_RS23215 827cd88dd92fe25464b5b1ffbbd0fcd4 309 Pfam PF00056 lactate/malate dehydrogenase, NAD binding domain 3 142 2.5E-37 T 22-04-2016 IPR001236 Lactate/malate dehydrogenase, N-terminal GO:0016491|GO:0055114 PP4_RS23215 827cd88dd92fe25464b5b1ffbbd0fcd4 309 SUPERFAMILY SSF51735 2 142 6.7E-43 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS23215 827cd88dd92fe25464b5b1ffbbd0fcd4 309 PRINTS PR00086 L-lactate dehydrogenase signature 3 27 3.4E-30 T 22-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 PP4_RS23215 827cd88dd92fe25464b5b1ffbbd0fcd4 309 PRINTS PR00086 L-lactate dehydrogenase signature 116 136 3.4E-30 T 22-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 PP4_RS23215 827cd88dd92fe25464b5b1ffbbd0fcd4 309 PRINTS PR00086 L-lactate dehydrogenase signature 140 158 3.4E-30 T 22-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 PP4_RS23215 827cd88dd92fe25464b5b1ffbbd0fcd4 309 PRINTS PR00086 L-lactate dehydrogenase signature 28 52 3.4E-30 T 22-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 PP4_RS23215 827cd88dd92fe25464b5b1ffbbd0fcd4 309 PRINTS PR00086 L-lactate dehydrogenase signature 170 183 3.4E-30 T 22-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 PP4_RS23215 827cd88dd92fe25464b5b1ffbbd0fcd4 309 Hamap MF_00487 Malate dehydrogenase [mdh]. 2 307 35.587 T 22-04-2016 IPR011275 Malate dehydrogenase, type 3 GO:0016616|GO:0055114 KEGG: 00020+1.1.1.37|KEGG: 00270+1.1.1.37|KEGG: 00620+1.1.1.37|KEGG: 00630+1.1.1.37|KEGG: 00680+1.1.1.37|KEGG: 00710+1.1.1.37|KEGG: 00720+1.1.1.37|MetaCyc: PWY-1622|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7115|MetaCyc: PWY-7383 PP4_RS23215 827cd88dd92fe25464b5b1ffbbd0fcd4 309 Gene3D G3DSA:3.40.50.720 2 142 2.9E-43 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS23215 827cd88dd92fe25464b5b1ffbbd0fcd4 309 Pfam PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain 146 307 1.4E-27 T 22-04-2016 IPR022383 Lactate/malate dehydrogenase, C-terminal GO:0016616|GO:0055114 PP4_RS23215 827cd88dd92fe25464b5b1ffbbd0fcd4 309 PANTHER PTHR11540 3 305 2.7E-106 T 22-04-2016 IPR001557 L-lactate/malate dehydrogenase GO:0016616|GO:0019752|GO:0055114 PP4_RS08095 e2645456ee98b6a1d9f493f2838e1b90 341 Gene3D G3DSA:3.40.50.720 2 183 1.3E-55 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS08095 e2645456ee98b6a1d9f493f2838e1b90 341 Gene3D G3DSA:1.10.1040.10 184 325 4.4E-52 T 22-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PP4_RS08095 e2645456ee98b6a1d9f493f2838e1b90 341 SUPERFAMILY SSF48179 180 331 9.52E-50 T 22-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PP4_RS08095 e2645456ee98b6a1d9f493f2838e1b90 341 PANTHER PTHR11728 7 337 5.7E-117 T 22-04-2016 PP4_RS08095 e2645456ee98b6a1d9f493f2838e1b90 341 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 5 322 34.893 T 22-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 PP4_RS08095 e2645456ee98b6a1d9f493f2838e1b90 341 PIRSF PIRSF000114 1 332 2.7E-108 T 22-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 PP4_RS08095 e2645456ee98b6a1d9f493f2838e1b90 341 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 133 153 3.7E-39 T 22-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 PP4_RS08095 e2645456ee98b6a1d9f493f2838e1b90 341 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 9 26 3.7E-39 T 22-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 PP4_RS08095 e2645456ee98b6a1d9f493f2838e1b90 341 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 238 255 3.7E-39 T 22-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 PP4_RS08095 e2645456ee98b6a1d9f493f2838e1b90 341 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 173 197 3.7E-39 T 22-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 PP4_RS08095 e2645456ee98b6a1d9f493f2838e1b90 341 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 59 86 3.7E-39 T 22-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 PP4_RS08095 e2645456ee98b6a1d9f493f2838e1b90 341 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 198 222 3.7E-39 T 22-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 PP4_RS08095 e2645456ee98b6a1d9f493f2838e1b90 341 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 7 160 2.5E-48 T 22-04-2016 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 PP4_RS08095 e2645456ee98b6a1d9f493f2838e1b90 341 SUPERFAMILY SSF51735 7 178 8.83E-48 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS08095 e2645456ee98b6a1d9f493f2838e1b90 341 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 188 209 - T 22-04-2016 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 PP4_RS08095 e2645456ee98b6a1d9f493f2838e1b90 341 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 180 320 3.6E-47 T 22-04-2016 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00940 PP4_RS24260 f10e9badb7ca956b402046d614c97d8f 296 Pfam PF03466 LysR substrate binding domain 92 292 2.4E-27 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS24260 f10e9badb7ca956b402046d614c97d8f 296 SUPERFAMILY SSF53850 86 291 8.36E-45 T 22-04-2016 PP4_RS24260 f10e9badb7ca956b402046d614c97d8f 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.5E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS24260 f10e9badb7ca956b402046d614c97d8f 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.5E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS24260 f10e9badb7ca956b402046d614c97d8f 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.5E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS24260 f10e9badb7ca956b402046d614c97d8f 296 Gene3D G3DSA:3.40.190.10 86 168 8.2E-24 T 22-04-2016 PP4_RS24260 f10e9badb7ca956b402046d614c97d8f 296 Gene3D G3DSA:3.40.190.10 268 291 8.2E-24 T 22-04-2016 PP4_RS24260 f10e9badb7ca956b402046d614c97d8f 296 PANTHER PTHR30118 1 294 3.7E-102 T 22-04-2016 PP4_RS24260 f10e9badb7ca956b402046d614c97d8f 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 59 2.6E-19 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS24260 f10e9badb7ca956b402046d614c97d8f 296 PANTHER PTHR30118:SF8 1 294 3.7E-102 T 22-04-2016 PP4_RS24260 f10e9badb7ca956b402046d614c97d8f 296 SUPERFAMILY SSF46785 1 81 3.93E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS24260 f10e9badb7ca956b402046d614c97d8f 296 Gene3D G3DSA:3.40.190.10 169 264 6.7E-33 T 22-04-2016 PP4_RS24260 f10e9badb7ca956b402046d614c97d8f 296 Gene3D G3DSA:1.10.10.10 1 80 2.2E-26 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS20925 3bc57761c198e06a856003baf4ebe80c 370 Pfam PF00107 Zinc-binding dehydrogenase 198 323 5.0E-24 T 22-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 PP4_RS20925 3bc57761c198e06a856003baf4ebe80c 370 SUPERFAMILY SSF50129 2 188 9.43E-71 T 22-04-2016 IPR011032 GroES-like PP4_RS20925 3bc57761c198e06a856003baf4ebe80c 370 TIGRFAM TIGR02818 adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 3 370 4.0E-219 T 22-04-2016 IPR014183 Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase GO:0006069|GO:0008270|GO:0051903|GO:0055114 KEGG: 00010+1.1.1.1|KEGG: 00040+1.1.1.-|KEGG: 00051+1.1.1.-|KEGG: 00071+1.1.1.1|KEGG: 00140+1.1.1.-|KEGG: 00240+1.1.1.-|KEGG: 00253+1.1.1.-|KEGG: 00260+1.1.1.1|KEGG: 00350+1.1.1.1|KEGG: 00362+1.1.1.-|KEGG: 00363+1.1.1.-|KEGG: 00365+1.1.1.-|KEGG: 00400+1.1.1.-|KEGG: 00520+1.1.1.-|KEGG: 00523+1.1.1.-|KEGG: 00591+1.1.1.-|KEGG: 00592+1.1.1.1|KEGG: 00620+1.1.1.28|KEGG: 00622+1.1.1.-|KEGG: 00625+1.1.1.1+1.1.1.-|KEGG: 00626+1.1.1.1|KEGG: 00633+1.1.1.-|KEGG: 00640+1.1.1.-|KEGG: 00650+1.1.1.-|KEGG: 00680+1.1.1.284+1.1.1.-|KEGG: 00720+1.1.1.-|KEGG: 00750+1.1.1.-|KEGG: 00830+1.1.1.1+1.1.1.-|KEGG: 00950+1.1.1.-|KEGG: 00966+1.1.1.-|KEGG: 00980+1.1.1.1|KEGG: 00981+1.1.1.-|KEGG: 00982+1.1.1.1|MetaCyc: PWY-1801|MetaCyc: PWY-3162|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5079|MetaCyc: PWY-5082|MetaCyc: PWY-5480|MetaCyc: PWY-5486|MetaCyc: PWY-5751|MetaCyc: PWY-6313|MetaCyc: PWY-6333|MetaCyc: PWY-6342|MetaCyc: PWY-6454|MetaCyc: PWY-6587|MetaCyc: PWY-6802|MetaCyc: PWY-6871|MetaCyc: PWY-6901|MetaCyc: PWY-7013|MetaCyc: PWY-7111|MetaCyc: PWY-7118|MetaCyc: PWY-7396 PP4_RS20925 3bc57761c198e06a856003baf4ebe80c 370 SUPERFAMILY SSF50129 320 370 7.06E-11 T 22-04-2016 IPR011032 GroES-like PP4_RS20925 3bc57761c198e06a856003baf4ebe80c 370 PANTHER PTHR11695:SF560 129 370 3.3E-210 T 22-04-2016 PP4_RS20925 3bc57761c198e06a856003baf4ebe80c 370 PANTHER PTHR11695:SF560 16 109 3.3E-210 T 22-04-2016 PP4_RS20925 3bc57761c198e06a856003baf4ebe80c 370 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 155 1.1E-23 T 22-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 PP4_RS20925 3bc57761c198e06a856003baf4ebe80c 370 SUPERFAMILY SSF51735 161 334 3.43E-48 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS20925 3bc57761c198e06a856003baf4ebe80c 370 Gene3D G3DSA:3.90.180.10 2 190 7.4E-67 T 22-04-2016 IPR011032 GroES-like PP4_RS20925 3bc57761c198e06a856003baf4ebe80c 370 Gene3D G3DSA:3.40.50.720 191 310 1.9E-42 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS20925 3bc57761c198e06a856003baf4ebe80c 370 PANTHER PTHR11695 129 370 3.3E-210 T 22-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PP4_RS20925 3bc57761c198e06a856003baf4ebe80c 370 PANTHER PTHR11695 16 109 3.3E-210 T 22-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PP4_RS22365 6ab321b42d32ce4be8c5ded5e49162eb 377 PANTHER PTHR21148 1 369 6.4E-174 T 22-04-2016 PP4_RS22365 6ab321b42d32ce4be8c5ded5e49162eb 377 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 9 371 2.5E-167 T 22-04-2016 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 PP4_RS22365 6ab321b42d32ce4be8c5ded5e49162eb 377 SUPERFAMILY SSF51713 6 368 4.05E-161 T 22-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 PP4_RS22365 6ab321b42d32ce4be8c5ded5e49162eb 377 Pfam PF01702 Queuine tRNA-ribosyltransferase 132 365 3.5E-89 T 22-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 PP4_RS22365 6ab321b42d32ce4be8c5ded5e49162eb 377 PANTHER PTHR21148:SF26 1 369 6.4E-174 T 22-04-2016 PP4_RS22365 6ab321b42d32ce4be8c5ded5e49162eb 377 Gene3D G3DSA:3.20.20.105 5 369 1.0E-164 T 22-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 PP4_RS22365 6ab321b42d32ce4be8c5ded5e49162eb 377 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 9 370 5.6E-160 T 22-04-2016 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 PP4_RS22365 6ab321b42d32ce4be8c5ded5e49162eb 377 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 7 363 56.747 T 22-04-2016 IPR004803 Queuine tRNA-ribosyltransferase GO:0008033|GO:0008479|GO:0008616 MetaCyc: PWY-6700|UniPathway: UPA00392 PP4_RS18325 a002c7c8f64f1c81a9b7242a5cd0cc69 184 PANTHER PTHR10245:SF53 10 184 7.9E-35 T 22-04-2016 PP4_RS18325 a002c7c8f64f1c81a9b7242a5cd0cc69 184 SUPERFAMILY SSF51182 54 183 4.18E-24 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS18325 a002c7c8f64f1c81a9b7242a5cd0cc69 184 Gene3D G3DSA:2.60.120.10 91 184 4.3E-20 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS18325 a002c7c8f64f1c81a9b7242a5cd0cc69 184 Pfam PF07883 Cupin domain 114 183 1.5E-13 T 22-04-2016 IPR013096 Cupin 2, conserved barrel PP4_RS18325 a002c7c8f64f1c81a9b7242a5cd0cc69 184 Gene3D G3DSA:1.10.260.40 8 77 7.0E-18 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS18325 a002c7c8f64f1c81a9b7242a5cd0cc69 184 Pfam PF01381 Helix-turn-helix 14 68 1.9E-10 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS18325 a002c7c8f64f1c81a9b7242a5cd0cc69 184 SMART SM00530 13 68 3.9E-11 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS18325 a002c7c8f64f1c81a9b7242a5cd0cc69 184 PANTHER PTHR10245 10 184 7.9E-35 T 22-04-2016 PP4_RS18325 a002c7c8f64f1c81a9b7242a5cd0cc69 184 SUPERFAMILY SSF47413 10 73 5.91E-15 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS26155 4d8a2373cc6bc50a0af28ef5d64f5840 398 PANTHER PTHR11061 3 398 2.9E-98 T 22-04-2016 PP4_RS26155 4d8a2373cc6bc50a0af28ef5d64f5840 398 Gene3D G3DSA:3.40.50.150 185 394 6.3E-59 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS26155 4d8a2373cc6bc50a0af28ef5d64f5840 398 SUPERFAMILY SSF53335 85 391 1.05E-69 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS26155 4d8a2373cc6bc50a0af28ef5d64f5840 398 PANTHER PTHR11061:SF12 3 398 2.9E-98 T 22-04-2016 PP4_RS26155 4d8a2373cc6bc50a0af28ef5d64f5840 398 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 172 340 4.3E-18 T 22-04-2016 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 PP4_RS26155 4d8a2373cc6bc50a0af28ef5d64f5840 398 SUPERFAMILY SSF88697 4 73 4.97E-9 T 22-04-2016 IPR015947 PUA-like domain PP4_RS26155 4d8a2373cc6bc50a0af28ef5d64f5840 398 Gene3D G3DSA:2.30.130.10 5 73 1.3E-10 T 22-04-2016 IPR015947 PUA-like domain PP4_RS26155 4d8a2373cc6bc50a0af28ef5d64f5840 398 Gene3D G3DSA:3.30.750.80 78 180 1.9E-31 T 22-04-2016 PP4_RS11300 ee7fb4e99e0e60e02732e2732dc8af65 517 TIGRFAM TIGR03248 galactar-dH20: galactarate dehydratase 12 517 1.3E-283 T 22-04-2016 IPR017654 Galactarate dehydratase GarD-like GO:0008867|GO:0046392 KEGG: 00053+4.2.1.42|MetaCyc: PWY-6497|UniPathway: UPA00565 PP4_RS11300 ee7fb4e99e0e60e02732e2732dc8af65 517 SMART SM00858 19 89 1.9E-10 T 22-04-2016 IPR013974 SAF domain PP4_RS11300 ee7fb4e99e0e60e02732e2732dc8af65 517 Pfam PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus 116 514 7.0E-145 T 22-04-2016 IPR007392 D-galactarate/Altronate dehydratase, C-terminal GO:0016829 PP4_RS11300 ee7fb4e99e0e60e02732e2732dc8af65 517 Pfam PF08666 SAF domain 19 88 2.6E-10 T 22-04-2016 IPR013974 SAF domain PP4_RS11300 ee7fb4e99e0e60e02732e2732dc8af65 517 PANTHER PTHR30536 1 517 0.0 T 22-04-2016 PP4_RS11300 ee7fb4e99e0e60e02732e2732dc8af65 517 PANTHER PTHR30536:SF1 1 517 0.0 T 22-04-2016 PP4_RS22260 e8dba61e13b051bcdb0341a2c18a2f82 429 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 6 414 1.8E-151 T 22-04-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21|Reactome: REACT_71 PP4_RS22260 e8dba61e13b051bcdb0341a2c18a2f82 429 PANTHER PTHR11476:SF9 3 429 1.0E-216 T 22-04-2016 PP4_RS22260 e8dba61e13b051bcdb0341a2c18a2f82 429 Pfam PF03129 Anticodon binding domain 349 422 5.4E-5 T 22-04-2016 IPR004154 Anticodon-binding PP4_RS22260 e8dba61e13b051bcdb0341a2c18a2f82 429 SUPERFAMILY SSF55681 6 321 2.59E-99 T 22-04-2016 PP4_RS22260 e8dba61e13b051bcdb0341a2c18a2f82 429 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 3 424 32.732 T 22-04-2016 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21|Reactome: REACT_71 PP4_RS22260 e8dba61e13b051bcdb0341a2c18a2f82 429 Pfam PF13393 Histidyl-tRNA synthetase 10 313 3.1E-43 T 22-04-2016 PP4_RS22260 e8dba61e13b051bcdb0341a2c18a2f82 429 PIRSF PIRSF001549 2 426 1.8E-115 T 22-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 PP4_RS22260 e8dba61e13b051bcdb0341a2c18a2f82 429 Gene3D G3DSA:3.40.50.800 330 423 2.8E-27 T 22-04-2016 IPR004154 Anticodon-binding PP4_RS22260 e8dba61e13b051bcdb0341a2c18a2f82 429 PANTHER PTHR11476 3 429 1.0E-216 T 22-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 PP4_RS22260 e8dba61e13b051bcdb0341a2c18a2f82 429 SUPERFAMILY SSF52954 330 423 8.02E-20 T 22-04-2016 IPR004154 Anticodon-binding PP4_RS22260 e8dba61e13b051bcdb0341a2c18a2f82 429 Gene3D G3DSA:3.30.930.10 222 324 5.9E-95 T 22-04-2016 PP4_RS22260 e8dba61e13b051bcdb0341a2c18a2f82 429 Gene3D G3DSA:3.30.930.10 5 186 5.9E-95 T 22-04-2016 PP4_RS21550 eea09f2682712eb2317732ba371f4625 1299 SUPERFAMILY SSF82697 1 150 1.62E-48 T 22-04-2016 PP4_RS21550 eea09f2682712eb2317732ba371f4625 1299 SUPERFAMILY SSF55326 219 426 1.01E-63 T 22-04-2016 PP4_RS21550 eea09f2682712eb2317732ba371f4625 1299 TIGRFAM TIGR01735 FGAM_synt: phosphoribosylformylglycinamidine synthase 3 1298 0.0 T 22-04-2016 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 PP4_RS21550 eea09f2682712eb2317732ba371f4625 1299 Pfam PF02769 AIR synthase related protein, C-terminal domain 430 587 4.3E-28 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain PP4_RS21550 eea09f2682712eb2317732ba371f4625 1299 Pfam PF02769 AIR synthase related protein, C-terminal domain 839 970 2.0E-13 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain PP4_RS21550 eea09f2682712eb2317732ba371f4625 1299 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 1043 1298 4.1E-106 T 22-04-2016 PP4_RS21550 eea09f2682712eb2317732ba371f4625 1299 PANTHER PTHR10099:SF5 1 1299 0.0 T 22-04-2016 PP4_RS21550 eea09f2682712eb2317732ba371f4625 1299 SMART SM01211 1043 1298 8.0E-152 T 22-04-2016 PP4_RS21550 eea09f2682712eb2317732ba371f4625 1299 SUPERFAMILY SSF109736 153 218 1.26E-21 T 22-04-2016 PP4_RS21550 eea09f2682712eb2317732ba371f4625 1299 Gene3D G3DSA:3.30.1330.10 644 807 7.1E-15 T 22-04-2016 IPR016188 PurM-like, N-terminal domain PP4_RS21550 eea09f2682712eb2317732ba371f4625 1299 Gene3D G3DSA:3.30.1330.10 209 419 6.2E-39 T 22-04-2016 IPR016188 PurM-like, N-terminal domain PP4_RS21550 eea09f2682712eb2317732ba371f4625 1299 SUPERFAMILY SSF55326 622 814 4.71E-68 T 22-04-2016 PP4_RS21550 eea09f2682712eb2317732ba371f4625 1299 SUPERFAMILY SSF56042 824 1037 1.12E-51 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain PP4_RS21550 eea09f2682712eb2317732ba371f4625 1299 SUPERFAMILY SSF56042 429 612 4.93E-53 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain PP4_RS21550 eea09f2682712eb2317732ba371f4625 1299 SUPERFAMILY SSF52317 1040 1298 2.62E-95 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS21550 eea09f2682712eb2317732ba371f4625 1299 PANTHER PTHR10099 1 1299 0.0 T 22-04-2016 PP4_RS21550 eea09f2682712eb2317732ba371f4625 1299 Gene3D G3DSA:3.40.50.880 1044 1267 6.4E-11 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS21550 eea09f2682712eb2317732ba371f4625 1299 Hamap MF_00419 Phosphoribosylformylglycinamidine synthase [purL]. 1 1299 21.268 T 22-04-2016 IPR010073 Phosphoribosylformylglycinamidine synthase GO:0004642|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 PP4_RS05210 c3b12d3081a896b1f1ce88b99be64d2e 157 SUPERFAMILY SSF47240 1 154 1.92E-54 T 22-04-2016 IPR009078 Ferritin-like superfamily PP4_RS05210 c3b12d3081a896b1f1ce88b99be64d2e 157 PANTHER PTHR30295 1 154 1.7E-58 T 22-04-2016 PP4_RS05210 c3b12d3081a896b1f1ce88b99be64d2e 157 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 22-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 PP4_RS05210 c3b12d3081a896b1f1ce88b99be64d2e 157 PRINTS PR00601 Bacterioferritin signature 44 64 5.0E-70 T 22-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 PP4_RS05210 c3b12d3081a896b1f1ce88b99be64d2e 157 PRINTS PR00601 Bacterioferritin signature 128 149 5.0E-70 T 22-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 PP4_RS05210 c3b12d3081a896b1f1ce88b99be64d2e 157 PRINTS PR00601 Bacterioferritin signature 3 22 5.0E-70 T 22-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 PP4_RS05210 c3b12d3081a896b1f1ce88b99be64d2e 157 PRINTS PR00601 Bacterioferritin signature 65 85 5.0E-70 T 22-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 PP4_RS05210 c3b12d3081a896b1f1ce88b99be64d2e 157 PRINTS PR00601 Bacterioferritin signature 107 127 5.0E-70 T 22-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 PP4_RS05210 c3b12d3081a896b1f1ce88b99be64d2e 157 PRINTS PR00601 Bacterioferritin signature 23 43 5.0E-70 T 22-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 PP4_RS05210 c3b12d3081a896b1f1ce88b99be64d2e 157 PRINTS PR00601 Bacterioferritin signature 86 106 5.0E-70 T 22-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 PP4_RS05210 c3b12d3081a896b1f1ce88b99be64d2e 157 Gene3D G3DSA:1.20.1260.10 1 156 8.7E-65 T 22-04-2016 IPR012347 Ferritin-related PP4_RS05210 c3b12d3081a896b1f1ce88b99be64d2e 157 TIGRFAM TIGR00754 bfr: bacterioferritin 1 157 2.0E-75 T 22-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 PP4_RS05210 c3b12d3081a896b1f1ce88b99be64d2e 157 PANTHER PTHR30295:SF9 1 154 1.7E-58 T 22-04-2016 PP4_RS05210 c3b12d3081a896b1f1ce88b99be64d2e 157 Pfam PF00210 Ferritin-like domain 8 143 3.7E-41 T 22-04-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 PP4_RS05210 c3b12d3081a896b1f1ce88b99be64d2e 157 PIRSF PIRSF002560 1 157 2.9E-72 T 22-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 PP4_RS01940 9ff2225d3774c53dc2a75a1e1e79f0b3 318 PIRSF PIRSF018266 2 318 3.3E-81 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS01940 9ff2225d3774c53dc2a75a1e1e79f0b3 318 PANTHER PTHR30273:SF3 4 318 1.7E-96 T 22-04-2016 PP4_RS01940 9ff2225d3774c53dc2a75a1e1e79f0b3 318 Pfam PF04773 FecR protein 115 204 2.8E-15 T 22-04-2016 IPR006860 FecR protein PP4_RS01940 9ff2225d3774c53dc2a75a1e1e79f0b3 318 PANTHER PTHR30273 4 318 1.7E-96 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS01940 9ff2225d3774c53dc2a75a1e1e79f0b3 318 Pfam PF16220 Domain of unknown function (DUF4880) 12 53 1.1E-10 T 22-04-2016 IPR032623 FecR, N-terminal PP4_RS02205 59817180824a49d53d641a639d54b1d8 329 PANTHER PTHR30004 1 328 1.1E-203 T 22-04-2016 PP4_RS02205 59817180824a49d53d641a639d54b1d8 329 Gene3D G3DSA:3.40.718.10 3 328 8.2E-136 T 22-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 PP4_RS02205 59817180824a49d53d641a639d54b1d8 329 TIGRFAM TIGR00557 pdxA: 4-hydroxythreonine-4-phosphate dehydrogenase PdxA 6 325 1.0E-127 T 22-04-2016 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00244 PP4_RS02205 59817180824a49d53d641a639d54b1d8 329 SUPERFAMILY SSF53659 3 328 1.29E-113 T 22-04-2016 PP4_RS02205 59817180824a49d53d641a639d54b1d8 329 Hamap MF_00536 4-hydroxythreonine-4-phosphate dehydrogenase [pdxA]. 2 325 36.057 T 22-04-2016 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00244 PP4_RS02205 59817180824a49d53d641a639d54b1d8 329 PANTHER PTHR30004:SF5 1 328 1.1E-203 T 22-04-2016 PP4_RS02205 59817180824a49d53d641a639d54b1d8 329 Pfam PF04166 Pyridoxal phosphate biosynthetic protein PdxA 32 321 1.7E-108 T 22-04-2016 IPR005255 4-hydroxythreonine-4-phosphate dehydrogenase PdxA GO:0008615|GO:0050570|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00750+1.1.1.262|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00244 PP4_RS13210 766388c632fba923c435817e0c903d05 269 SMART SM00419 194 242 1.3E-13 T 22-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 PP4_RS13210 766388c632fba923c435817e0c903d05 269 Gene3D G3DSA:1.10.10.10 177 248 9.3E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS13210 766388c632fba923c435817e0c903d05 269 SMART SM00100 37 155 4.0E-4 T 22-04-2016 IPR000595 Cyclic nucleotide-binding domain PP4_RS13210 766388c632fba923c435817e0c903d05 269 Pfam PF13545 Crp-like helix-turn-helix domain 175 248 3.8E-16 T 22-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 PP4_RS13210 766388c632fba923c435817e0c903d05 269 PANTHER PTHR24567 24 248 6.0E-53 T 22-04-2016 PP4_RS13210 766388c632fba923c435817e0c903d05 269 PANTHER PTHR24567:SF28 24 248 6.0E-53 T 22-04-2016 PP4_RS13210 766388c632fba923c435817e0c903d05 269 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 216 231 2.2E-7 T 22-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 PP4_RS13210 766388c632fba923c435817e0c903d05 269 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 200 216 2.2E-7 T 22-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 PP4_RS13210 766388c632fba923c435817e0c903d05 269 Pfam PF00027 Cyclic nucleotide-binding domain 57 141 2.3E-12 T 22-04-2016 IPR000595 Cyclic nucleotide-binding domain PP4_RS13210 766388c632fba923c435817e0c903d05 269 Gene3D G3DSA:2.60.120.10 40 176 1.4E-18 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS13210 766388c632fba923c435817e0c903d05 269 SUPERFAMILY SSF51206 32 168 2.75E-23 T 22-04-2016 IPR018490 Cyclic nucleotide-binding-like PP4_RS13210 766388c632fba923c435817e0c903d05 269 SUPERFAMILY SSF46785 173 249 4.73E-16 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS12255 922b43951b676542c24ed150d2d730fd 204 PANTHER PTHR30086:SF13 1 204 1.2E-31 T 22-04-2016 PP4_RS12255 922b43951b676542c24ed150d2d730fd 204 PANTHER PTHR30086 1 204 1.2E-31 T 22-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PP4_RS12255 922b43951b676542c24ed150d2d730fd 204 Pfam PF01810 LysE type translocator 14 199 9.8E-26 T 22-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PP4_RS25855 f9a4323cff00bb96a3fd652216c63112 1102 SUPERFAMILY SSF82689 981 1079 3.01E-22 T 22-04-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 PP4_RS25855 f9a4323cff00bb96a3fd652216c63112 1102 Pfam PF00924 Mechanosensitive ion channel 870 1069 1.7E-55 T 22-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 PP4_RS25855 f9a4323cff00bb96a3fd652216c63112 1102 Pfam PF12794 Mechanosensitive ion channel inner membrane domain 1 491 809 1.5E-100 T 22-04-2016 IPR025692 Mechanosensitive ion channel inner membrane domain 1 PP4_RS25855 f9a4323cff00bb96a3fd652216c63112 1102 Pfam PF12795 Mechanosensitive ion channel porin domain 37 270 5.9E-56 T 22-04-2016 IPR024393 Mechanosensitive ion channel MscS, porin domain PP4_RS25855 f9a4323cff00bb96a3fd652216c63112 1102 PANTHER PTHR30347 1 1101 0.0 T 22-04-2016 PP4_RS25855 f9a4323cff00bb96a3fd652216c63112 1102 SUPERFAMILY SSF50182 913 978 2.45E-17 T 22-04-2016 IPR010920 LSM domain PP4_RS25855 f9a4323cff00bb96a3fd652216c63112 1102 Gene3D G3DSA:2.30.30.60 928 977 6.6E-17 T 22-04-2016 PP4_RS25855 f9a4323cff00bb96a3fd652216c63112 1102 Gene3D G3DSA:3.30.70.100 983 1067 1.7E-21 T 22-04-2016 PP4_RS25855 f9a4323cff00bb96a3fd652216c63112 1102 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 942 976 - T 22-04-2016 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 PP4_RS25855 f9a4323cff00bb96a3fd652216c63112 1102 PANTHER PTHR30347:SF2 1 1101 0.0 T 22-04-2016 PP4_RS25855 f9a4323cff00bb96a3fd652216c63112 1102 SUPERFAMILY SSF82861 828 911 4.32E-7 T 22-04-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 PP4_RS01960 ed3cd798c444aea43e9824e55a141bc6 147 PANTHER PTHR26402 27 142 3.6E-21 T 22-04-2016 PP4_RS01960 ed3cd798c444aea43e9824e55a141bc6 147 SUPERFAMILY SSF52172 26 145 1.85E-29 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS01960 ed3cd798c444aea43e9824e55a141bc6 147 Gene3D G3DSA:3.40.50.2300 26 144 3.2E-27 T 22-04-2016 PP4_RS01960 ed3cd798c444aea43e9824e55a141bc6 147 Pfam PF00072 Response regulator receiver domain 29 140 1.6E-21 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS01960 ed3cd798c444aea43e9824e55a141bc6 147 SMART SM00448 27 140 1.7E-19 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS26275 17b0214dfc48e06a15a08a7f88e4779c 224 Gene3D G3DSA:3.30.70.260 141 200 8.4E-31 T 22-04-2016 PP4_RS26275 17b0214dfc48e06a15a08a7f88e4779c 224 Pfam PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) 53 217 3.9E-58 T 22-04-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 PP4_RS26275 17b0214dfc48e06a15a08a7f88e4779c 224 SUPERFAMILY SSF75445 131 202 1.83E-24 T 22-04-2016 PP4_RS26275 17b0214dfc48e06a15a08a7f88e4779c 224 TIGRFAM TIGR00021 rpiA: ribose 5-phosphate isomerase A 7 219 2.1E-64 T 22-04-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 PP4_RS26275 17b0214dfc48e06a15a08a7f88e4779c 224 PANTHER PTHR11934:SF11 1 224 3.0E-136 T 22-04-2016 PP4_RS26275 17b0214dfc48e06a15a08a7f88e4779c 224 Hamap MF_00170 Ribose-5-phosphate isomerase A [rpiA]. 3 221 33.292 T 22-04-2016 IPR020672 Ribose-5-phosphate isomerase, type A, subgroup GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 PP4_RS26275 17b0214dfc48e06a15a08a7f88e4779c 224 Gene3D G3DSA:3.40.50.1360 1 140 2.2E-57 T 22-04-2016 PP4_RS26275 17b0214dfc48e06a15a08a7f88e4779c 224 SUPERFAMILY SSF100950 1 150 3.4E-44 T 22-04-2016 PP4_RS26275 17b0214dfc48e06a15a08a7f88e4779c 224 PANTHER PTHR11934 1 224 3.0E-136 T 22-04-2016 IPR004788 Ribose 5-phosphate isomerase, type A GO:0004751|GO:0009052 KEGG: 00030+5.3.1.6|KEGG: 00051+5.3.1.6|KEGG: 00710+5.3.1.6|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 PP4_RS18675 277528c3ce355d068d2dac6538d4f5fd 869 SUPERFAMILY SSF57783 747 809 9.35E-17 T 22-04-2016 PP4_RS18675 277528c3ce355d068d2dac6538d4f5fd 869 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 5 637 4.1E-248 T 22-04-2016 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 PP4_RS18675 277528c3ce355d068d2dac6538d4f5fd 869 PANTHER PTHR11390 73 779 0.0 T 22-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 PP4_RS18675 277528c3ce355d068d2dac6538d4f5fd 869 PANTHER PTHR11390 1 37 0.0 T 22-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 PP4_RS18675 277528c3ce355d068d2dac6538d4f5fd 869 Gene3D G3DSA:3.40.50.140 1 169 1.8E-57 T 22-04-2016 IPR006171 Toprim domain PP4_RS18675 277528c3ce355d068d2dac6538d4f5fd 869 SMART SM00436 139 227 2.5E-48 T 22-04-2016 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 PP4_RS18675 277528c3ce355d068d2dac6538d4f5fd 869 Pfam PF01131 DNA topoisomerase 163 571 2.1E-129 T 22-04-2016 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 PP4_RS18675 277528c3ce355d068d2dac6538d4f5fd 869 SUPERFAMILY SSF56712 3 613 6.15E-203 T 22-04-2016 IPR023405 DNA topoisomerase, type IA, core domain PP4_RS18675 277528c3ce355d068d2dac6538d4f5fd 869 PANTHER PTHR11390:SF27 73 779 0.0 T 22-04-2016 PP4_RS18675 277528c3ce355d068d2dac6538d4f5fd 869 PANTHER PTHR11390:SF27 1 37 0.0 T 22-04-2016 PP4_RS18675 277528c3ce355d068d2dac6538d4f5fd 869 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 315 329 - T 22-04-2016 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 PP4_RS18675 277528c3ce355d068d2dac6538d4f5fd 869 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 603 626 1.1E-4 T 22-04-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 PP4_RS18675 277528c3ce355d068d2dac6538d4f5fd 869 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 713 747 1.3E-11 T 22-04-2016 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 PP4_RS18675 277528c3ce355d068d2dac6538d4f5fd 869 SUPERFAMILY SSF57783 812 868 8.84E-22 T 22-04-2016 PP4_RS18675 277528c3ce355d068d2dac6538d4f5fd 869 Gene3D G3DSA:3.30.65.10 748 808 3.0E-23 T 22-04-2016 PP4_RS18675 277528c3ce355d068d2dac6538d4f5fd 869 Gene3D G3DSA:3.30.65.10 592 630 4.2E-12 T 22-04-2016 PP4_RS18675 277528c3ce355d068d2dac6538d4f5fd 869 Gene3D G3DSA:3.30.65.10 709 746 1.6E-12 T 22-04-2016 PP4_RS18675 277528c3ce355d068d2dac6538d4f5fd 869 Gene3D G3DSA:1.10.460.10 480 584 3.1E-59 T 22-04-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 PP4_RS18675 277528c3ce355d068d2dac6538d4f5fd 869 Gene3D G3DSA:1.10.460.10 170 217 3.1E-59 T 22-04-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 PP4_RS18675 277528c3ce355d068d2dac6538d4f5fd 869 Pfam PF08272 Topoisomerase I zinc-ribbon-like 761 796 7.2E-12 T 22-04-2016 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 PP4_RS18675 277528c3ce355d068d2dac6538d4f5fd 869 Pfam PF08272 Topoisomerase I zinc-ribbon-like 827 866 1.0E-17 T 22-04-2016 IPR013263 DNA topoisomerase I, zinc ribbon-like, bacterial-type GO:0003677|GO:0003917|GO:0006265 PP4_RS18675 277528c3ce355d068d2dac6538d4f5fd 869 SMART SM00493 3 138 6.9E-30 T 22-04-2016 IPR006171 Toprim domain PP4_RS18675 277528c3ce355d068d2dac6538d4f5fd 869 Gene3D G3DSA:2.20.25.10 811 868 2.8E-29 T 22-04-2016 PP4_RS18675 277528c3ce355d068d2dac6538d4f5fd 869 Gene3D G3DSA:2.70.20.10 343 479 2.7E-33 T 22-04-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 PP4_RS18675 277528c3ce355d068d2dac6538d4f5fd 869 Gene3D G3DSA:2.70.20.10 219 341 1.1E-34 T 22-04-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 PP4_RS18675 277528c3ce355d068d2dac6538d4f5fd 869 Hamap MF_00952 DNA topoisomerase 1 [topA]. 3 726 57.031 T 22-04-2016 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 PP4_RS18675 277528c3ce355d068d2dac6538d4f5fd 869 Pfam PF01751 Toprim domain 5 148 2.3E-32 T 22-04-2016 IPR006171 Toprim domain PP4_RS18675 277528c3ce355d068d2dac6538d4f5fd 869 SUPERFAMILY SSF57783 703 746 4.93E-9 T 22-04-2016 PP4_RS18675 277528c3ce355d068d2dac6538d4f5fd 869 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 112 125 1.7E-37 T 22-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 PP4_RS18675 277528c3ce355d068d2dac6538d4f5fd 869 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 396 412 1.7E-37 T 22-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 PP4_RS18675 277528c3ce355d068d2dac6538d4f5fd 869 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 320 329 1.7E-37 T 22-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 PP4_RS18675 277528c3ce355d068d2dac6538d4f5fd 869 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 197 215 1.7E-37 T 22-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 PP4_RS18675 277528c3ce355d068d2dac6538d4f5fd 869 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 496 510 1.7E-37 T 22-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 PP4_RS18675 277528c3ce355d068d2dac6538d4f5fd 869 SMART SM00437 278 533 3.9E-120 T 22-04-2016 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 PP4_RS24770 90a204772125bfb0fdf341fccfceaa73 285 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 263 284 1.4E-7 T 22-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal PP4_RS24770 90a204772125bfb0fdf341fccfceaa73 285 Gene3D G3DSA:3.40.50.300 43 281 1.9E-56 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS24770 90a204772125bfb0fdf341fccfceaa73 285 PANTHER PTHR24220 46 285 3.1E-142 T 22-04-2016 PP4_RS24770 90a204772125bfb0fdf341fccfceaa73 285 SUPERFAMILY SSF52540 44 283 9.52E-54 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS24770 90a204772125bfb0fdf341fccfceaa73 285 Pfam PF00005 ABC transporter 60 215 5.6E-27 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS24770 90a204772125bfb0fdf341fccfceaa73 285 TIGRFAM TIGR03411 urea_trans_UrtD: urea ABC transporter, ATP-binding protein UrtD 44 285 7.0E-117 T 22-04-2016 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD PP4_RS24770 90a204772125bfb0fdf341fccfceaa73 285 PANTHER PTHR24220:SF366 46 285 3.1E-142 T 22-04-2016 IPR017781 ABC transporter, urea, ATP-binding protein, UrtD PP4_RS25190 e00571ec97bd3c6d78f9ca90625a05ae 473 TIGRFAM TIGR02198 rfaE_dom_I: bifunctional protein RfaE, domain I 5 312 4.1E-124 T 22-04-2016 IPR011913 RfaE bifunctional protein, domain I GO:0005975|GO:0016773|GO:0016779 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.7.70+2.7.1.167|UniPathway: UPA00356|UniPathway: UPA00356 PP4_RS25190 e00571ec97bd3c6d78f9ca90625a05ae 473 SUPERFAMILY SSF52374 339 470 4.15E-25 T 22-04-2016 PP4_RS25190 e00571ec97bd3c6d78f9ca90625a05ae 473 SUPERFAMILY SSF53613 13 311 3.9E-59 T 22-04-2016 IPR029056 Ribokinase-like PP4_RS25190 e00571ec97bd3c6d78f9ca90625a05ae 473 PANTHER PTHR10584 1 339 9.1E-146 T 22-04-2016 PP4_RS25190 e00571ec97bd3c6d78f9ca90625a05ae 473 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 341 407 1.1E-16 T 22-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 PP4_RS25190 e00571ec97bd3c6d78f9ca90625a05ae 473 Gene3D G3DSA:3.40.50.620 339 457 1.4E-35 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS25190 e00571ec97bd3c6d78f9ca90625a05ae 473 TIGRFAM TIGR02199 rfaE_dom_II: bifunctional protein RfaE, domain II 331 472 2.8E-64 T 22-04-2016 IPR011914 RfaE bifunctional protein, domain II GO:0005975|GO:0016773|GO:0016779 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.7.70+2.7.1.167|UniPathway: UPA00356|UniPathway: UPA00356 PP4_RS25190 e00571ec97bd3c6d78f9ca90625a05ae 473 Hamap MF_01603 Bifunctional protein HldE [hldE]. 4 473 42.783 T 22-04-2016 IPR023030 Bifunctional protein HldE GO:0016773|GO:0016779 KEGG: 00040+2.7.1.16|KEGG: 00540+2.7.7.70+2.7.1.167|UniPathway: UPA00356|UniPathway: UPA00356 PP4_RS25190 e00571ec97bd3c6d78f9ca90625a05ae 473 Pfam PF01467 Cytidylyltransferase-like 344 435 5.1E-15 T 22-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 PP4_RS25190 e00571ec97bd3c6d78f9ca90625a05ae 473 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 51 74 - T 22-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 PP4_RS25190 e00571ec97bd3c6d78f9ca90625a05ae 473 PANTHER PTHR10584:SF159 1 339 9.1E-146 T 22-04-2016 PP4_RS25190 e00571ec97bd3c6d78f9ca90625a05ae 473 Pfam PF00294 pfkB family carbohydrate kinase 13 304 2.2E-48 T 22-04-2016 IPR011611 Carbohydrate kinase PfkB PP4_RS25190 e00571ec97bd3c6d78f9ca90625a05ae 473 Gene3D G3DSA:3.40.1190.20 12 313 8.7E-65 T 22-04-2016 IPR029056 Ribokinase-like PP4_RS23020 c055f6fe44ae379b648c89aee994e827 385 PANTHER PTHR23521 1 371 7.9E-58 T 22-04-2016 PP4_RS23020 c055f6fe44ae379b648c89aee994e827 385 Gene3D G3DSA:1.20.1250.20 6 185 2.7E-21 T 22-04-2016 PP4_RS23020 c055f6fe44ae379b648c89aee994e827 385 Gene3D G3DSA:1.20.1250.20 199 377 1.2E-17 T 22-04-2016 PP4_RS23020 c055f6fe44ae379b648c89aee994e827 385 PANTHER PTHR23521:SF2 1 371 7.9E-58 T 22-04-2016 PP4_RS23020 c055f6fe44ae379b648c89aee994e827 385 SUPERFAMILY SSF103473 4 370 4.45E-44 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS23020 c055f6fe44ae379b648c89aee994e827 385 Pfam PF07690 Major Facilitator Superfamily 9 232 1.1E-16 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS17105 b7a8b0d546693c55f1844968ccc48a29 404 PANTHER PTHR30097:SF4 43 404 4.7E-102 T 22-04-2016 PP4_RS17105 b7a8b0d546693c55f1844968ccc48a29 404 SUPERFAMILY SSF111369 105 323 6.8E-23 T 22-04-2016 PP4_RS17105 b7a8b0d546693c55f1844968ccc48a29 404 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 81 392 1.0E-48 T 22-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 PP4_RS17105 b7a8b0d546693c55f1844968ccc48a29 404 Gene3D G3DSA:2.40.50.100 214 245 5.2E-13 T 22-04-2016 PP4_RS17105 b7a8b0d546693c55f1844968ccc48a29 404 Gene3D G3DSA:2.40.50.100 108 141 5.2E-13 T 22-04-2016 PP4_RS17105 b7a8b0d546693c55f1844968ccc48a29 404 PANTHER PTHR30097 43 404 4.7E-102 T 22-04-2016 PP4_RS17105 b7a8b0d546693c55f1844968ccc48a29 404 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 92 319 8.7E-38 T 22-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PP4_RS11080 ab6d19c2b22324674fa2d53600afd922 541 SMART SM00304 267 317 94.0 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS11080 ab6d19c2b22324674fa2d53600afd922 541 SMART SM00304 212 264 9.8E-10 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS11080 ab6d19c2b22324674fa2d53600afd922 541 Pfam PF00672 HAMP domain 193 261 6.1E-11 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS11080 ab6d19c2b22324674fa2d53600afd922 541 PANTHER PTHR32089:SF64 157 163 3.6E-120 T 22-04-2016 PP4_RS11080 ab6d19c2b22324674fa2d53600afd922 541 PANTHER PTHR32089:SF64 186 541 3.6E-120 T 22-04-2016 PP4_RS11080 ab6d19c2b22324674fa2d53600afd922 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 6 31 1.7E-20 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS11080 ab6d19c2b22324674fa2d53600afd922 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 406 435 1.7E-20 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS11080 ab6d19c2b22324674fa2d53600afd922 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 377 404 1.7E-20 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS11080 ab6d19c2b22324674fa2d53600afd922 541 Pfam PF12729 Four helix bundle sensory module for signal transduction 5 183 4.5E-33 T 22-04-2016 IPR024478 4HB MCP domain PP4_RS11080 ab6d19c2b22324674fa2d53600afd922 541 Gene3D G3DSA:1.10.287.950 293 511 9.9E-56 T 22-04-2016 PP4_RS11080 ab6d19c2b22324674fa2d53600afd922 541 SUPERFAMILY SSF58104 232 541 6.02E-77 T 22-04-2016 PP4_RS11080 ab6d19c2b22324674fa2d53600afd922 541 PANTHER PTHR32089 157 163 3.6E-120 T 22-04-2016 PP4_RS11080 ab6d19c2b22324674fa2d53600afd922 541 PANTHER PTHR32089 186 541 3.6E-120 T 22-04-2016 PP4_RS11080 ab6d19c2b22324674fa2d53600afd922 541 SMART SM00283 279 540 8.7E-78 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS11080 ab6d19c2b22324674fa2d53600afd922 541 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 341 539 6.8E-48 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS08755 50b18af076704e304286cea44f7951fb 427 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 18 414 8.5E-134 T 22-04-2016 IPR010158 Amidase, hydantoinase/carbamoylase GO:0008152|GO:0016813 PP4_RS08755 50b18af076704e304286cea44f7951fb 427 Gene3D G3DSA:3.30.70.360 234 336 2.8E-36 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain PP4_RS08755 50b18af076704e304286cea44f7951fb 427 SUPERFAMILY SSF53187 344 415 2.86E-98 T 22-04-2016 PP4_RS08755 50b18af076704e304286cea44f7951fb 427 SUPERFAMILY SSF53187 7 231 2.86E-98 T 22-04-2016 PP4_RS08755 50b18af076704e304286cea44f7951fb 427 Gene3D G3DSA:3.40.630.10 14 233 6.1E-116 T 22-04-2016 PP4_RS08755 50b18af076704e304286cea44f7951fb 427 Gene3D G3DSA:3.40.630.10 359 417 6.1E-116 T 22-04-2016 PP4_RS08755 50b18af076704e304286cea44f7951fb 427 Pfam PF01546 Peptidase family M20/M25/M40 88 414 3.2E-37 T 22-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 PP4_RS08755 50b18af076704e304286cea44f7951fb 427 PIRSF PIRSF001235 13 421 6.3E-134 T 22-04-2016 IPR010158 Amidase, hydantoinase/carbamoylase GO:0008152|GO:0016813 PP4_RS08755 50b18af076704e304286cea44f7951fb 427 SUPERFAMILY SSF55031 221 337 4.78E-29 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain PP4_RS08755 50b18af076704e304286cea44f7951fb 427 Pfam PF07687 Peptidase dimerisation domain 220 321 2.1E-6 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain PP4_RS08755 50b18af076704e304286cea44f7951fb 427 PANTHER PTHR32494:SF6 6 424 1.9E-283 T 22-04-2016 PP4_RS08755 50b18af076704e304286cea44f7951fb 427 PANTHER PTHR32494 6 424 1.9E-283 T 22-04-2016 PP4_RS04245 a5d3b5816b35ec8c29d920a3d116af51 72 Pfam PF06004 Bacterial protein of unknown function (DUF903) 23 70 1.5E-20 T 22-04-2016 IPR010305 Protein of unknown function DUF903 PP4_RS04245 a5d3b5816b35ec8c29d920a3d116af51 72 PANTHER PTHR37011 1 72 3.1E-30 T 22-04-2016 PP4_RS04245 a5d3b5816b35ec8c29d920a3d116af51 72 SUPERFAMILY SSF50182 21 71 1.25E-15 T 22-04-2016 IPR010920 LSM domain PP4_RS04245 a5d3b5816b35ec8c29d920a3d116af51 72 Gene3D G3DSA:2.30.30.100 20 72 3.3E-21 T 22-04-2016 PP4_RS04245 a5d3b5816b35ec8c29d920a3d116af51 72 PANTHER PTHR37011:SF1 1 72 3.1E-30 T 22-04-2016 PP4_RS19920 1679268b5e888f9e5d4115cadbfa8776 302 PIRSF PIRSF037167 1 300 6.0E-134 T 22-04-2016 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 PP4_RS19920 1679268b5e888f9e5d4115cadbfa8776 302 Hamap MF_02125 50S ribosomal protein L3 glutamine methyltransferase [prmB]. 1 293 50.996 T 22-04-2016 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 PP4_RS19920 1679268b5e888f9e5d4115cadbfa8776 302 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 8 291 6.4E-77 T 22-04-2016 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 PP4_RS19920 1679268b5e888f9e5d4115cadbfa8776 302 Pfam PF05175 Methyltransferase small domain 127 210 1.4E-16 T 22-04-2016 IPR007848 Methyltransferase small domain GO:0008168 PP4_RS19920 1679268b5e888f9e5d4115cadbfa8776 302 Gene3D G3DSA:3.40.50.150 101 284 1.4E-51 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS19920 1679268b5e888f9e5d4115cadbfa8776 302 SUPERFAMILY SSF53335 9 287 1.15E-54 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS19920 1679268b5e888f9e5d4115cadbfa8776 302 Gene3D G3DSA:1.10.8.10 8 99 4.1E-11 T 22-04-2016 PP4_RS19920 1679268b5e888f9e5d4115cadbfa8776 302 TIGRFAM TIGR03533 L3_gln_methyl: protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific 6 287 6.7E-126 T 22-04-2016 IPR017127 Ribosomal protein L3-specific, glutamine-N5-methyltransferase GO:0005622|GO:0009007|GO:0032775 PP4_RS19920 1679268b5e888f9e5d4115cadbfa8776 302 PANTHER PTHR18895:SF66 1 290 3.4E-151 T 22-04-2016 PP4_RS19920 1679268b5e888f9e5d4115cadbfa8776 302 PANTHER PTHR18895 1 290 3.4E-151 T 22-04-2016 PP4_RS19920 1679268b5e888f9e5d4115cadbfa8776 302 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 197 203 - T 22-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 PP4_RS17950 c547e3a4c5bffa59fa70807efa41dcd9 885 Gene3D G3DSA:1.10.10.10 820 883 5.7E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS17950 c547e3a4c5bffa59fa70807efa41dcd9 885 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 838 854 5.7E-12 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS17950 c547e3a4c5bffa59fa70807efa41dcd9 885 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 854 866 5.7E-12 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS17950 c547e3a4c5bffa59fa70807efa41dcd9 885 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 824 838 5.7E-12 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS17950 c547e3a4c5bffa59fa70807efa41dcd9 885 ProSitePatterns PS00622 LuxR-type HTH domain signature. 838 865 - T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS17950 c547e3a4c5bffa59fa70807efa41dcd9 885 SMART SM00421 821 878 3.5E-21 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS17950 c547e3a4c5bffa59fa70807efa41dcd9 885 SUPERFAMILY SSF48452 411 523 2.59E-6 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS17950 c547e3a4c5bffa59fa70807efa41dcd9 885 Gene3D G3DSA:3.40.50.300 30 114 5.7E-4 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS17950 c547e3a4c5bffa59fa70807efa41dcd9 885 Gene3D G3DSA:1.25.40.10 453 786 6.6E-19 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS17950 c547e3a4c5bffa59fa70807efa41dcd9 885 Pfam PF00196 Bacterial regulatory proteins, luxR family 823 876 8.1E-18 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS17950 c547e3a4c5bffa59fa70807efa41dcd9 885 SUPERFAMILY SSF52540 25 221 1.33E-9 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS17950 c547e3a4c5bffa59fa70807efa41dcd9 885 SUPERFAMILY SSF46894 818 884 6.8E-18 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS02215 709944151a61ae57a14c1ea1dde74e1d 932 PANTHER PTHR30189 146 511 1.2E-95 T 22-04-2016 PP4_RS02215 709944151a61ae57a14c1ea1dde74e1d 932 PANTHER PTHR30189 538 902 1.2E-95 T 22-04-2016 PP4_RS02215 709944151a61ae57a14c1ea1dde74e1d 932 Pfam PF03968 OstA-like protein 150 283 2.7E-13 T 22-04-2016 IPR005653 Organic solvent tolerance-like, N-terminal PP4_RS02215 709944151a61ae57a14c1ea1dde74e1d 932 Hamap MF_01411 LPS-assembly protein LptD [lptD]. 17 907 21.113 T 22-04-2016 IPR020889 LPS-assembly protein LptD GO:0009279|GO:0010033|GO:0015920|GO:0043165 PP4_RS02215 709944151a61ae57a14c1ea1dde74e1d 932 Gene3D G3DSA:2.60.450.10 142 291 3.8E-19 T 22-04-2016 PP4_RS02215 709944151a61ae57a14c1ea1dde74e1d 932 Pfam PF04453 Organic solvent tolerance protein 394 838 8.7E-119 T 22-04-2016 IPR007543 Organic solvent tolerance protein, C-terminal GO:0010033|GO:0019867|GO:0061024 PP4_RS19510 c80ec0af125b3446512500176c236ab9 294 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 1 293 3.9E-27 T 22-04-2016 IPR020801 Polyketide synthase, acyl transferase domain PP4_RS19510 c80ec0af125b3446512500176c236ab9 294 PANTHER PTHR10982 1 283 1.4E-130 T 22-04-2016 PP4_RS19510 c80ec0af125b3446512500176c236ab9 294 Gene3D G3DSA:3.30.70.250 108 179 7.7E-32 T 22-04-2016 PP4_RS19510 c80ec0af125b3446512500176c236ab9 294 SUPERFAMILY SSF52151 173 292 4.97E-69 T 22-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 PP4_RS19510 c80ec0af125b3446512500176c236ab9 294 SUPERFAMILY SSF52151 1 105 4.97E-69 T 22-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 PP4_RS19510 c80ec0af125b3446512500176c236ab9 294 Pfam PF00698 Acyl transferase domain 21 258 3.5E-33 T 22-04-2016 IPR014043 Acyl transferase PP4_RS19510 c80ec0af125b3446512500176c236ab9 294 PIRSF PIRSF000446 1 293 5.4E-111 T 22-04-2016 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388|UniPathway: UPA00094 PP4_RS19510 c80ec0af125b3446512500176c236ab9 294 SUPERFAMILY SSF55048 111 180 2.22E-18 T 22-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 PP4_RS19510 c80ec0af125b3446512500176c236ab9 294 Gene3D G3DSA:3.40.366.10 1 105 1.2E-60 T 22-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 PP4_RS19510 c80ec0af125b3446512500176c236ab9 294 Gene3D G3DSA:3.40.366.10 180 283 1.2E-60 T 22-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 PP4_RS19510 c80ec0af125b3446512500176c236ab9 294 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 1 272 9.6E-105 T 22-04-2016 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 PP4_RS27010 fa4ad3e418d34c5d20b2de4e1c8effbd 87 Gene3D G3DSA:3.90.940.10 1 68 4.7E-17 T 22-04-2016 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PP4_RS27010 fa4ad3e418d34c5d20b2de4e1c8effbd 87 TIGRFAM TIGR00690 rpoZ: DNA-directed RNA polymerase, omega subunit 1 59 4.6E-22 T 22-04-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PP4_RS27010 fa4ad3e418d34c5d20b2de4e1c8effbd 87 PANTHER PTHR34476 2 87 4.8E-25 T 22-04-2016 PP4_RS27010 fa4ad3e418d34c5d20b2de4e1c8effbd 87 Pfam PF01192 RNA polymerase Rpb6 8 60 2.1E-17 T 22-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PP4_RS27010 fa4ad3e418d34c5d20b2de4e1c8effbd 87 SUPERFAMILY SSF63562 1 81 2.79E-26 T 22-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PP4_RS27010 fa4ad3e418d34c5d20b2de4e1c8effbd 87 Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. 1 62 17.573 T 22-04-2016 IPR003716 DNA-directed RNA polymerase, omega subunit GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PP4_RS27010 fa4ad3e418d34c5d20b2de4e1c8effbd 87 SMART SM01409 8 61 5.7E-17 T 22-04-2016 IPR006110 RNA polymerase, subunit omega/K/RPB6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PP4_RS12970 dcf4f50bba5ce2d681bfd5993a8274fe 221 Gene3D G3DSA:1.20.910.10 2 218 7.8E-73 T 22-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 PP4_RS12970 dcf4f50bba5ce2d681bfd5993a8274fe 221 SUPERFAMILY SSF48613 2 216 2.82E-68 T 22-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 PP4_RS12970 dcf4f50bba5ce2d681bfd5993a8274fe 221 TIGRFAM TIGR04306 salvage_TenA: thiaminase II 14 217 5.8E-40 T 22-04-2016 IPR027574 Thiaminase II GO:0006772|GO:0050334 KEGG: 00730+3.5.99.2|MetaCyc: PWY-6899|MetaCyc: PWY-7356|UniPathway: UPA00060 PP4_RS12970 dcf4f50bba5ce2d681bfd5993a8274fe 221 Pfam PF03070 TENA/THI-4/PQQC family 12 218 3.8E-49 T 22-04-2016 IPR004305 Thiaminase-2/PQQC PP4_RS12970 dcf4f50bba5ce2d681bfd5993a8274fe 221 PANTHER PTHR20858:SF17 14 182 7.5E-62 T 22-04-2016 PP4_RS12970 dcf4f50bba5ce2d681bfd5993a8274fe 221 PANTHER PTHR20858 14 182 7.5E-62 T 22-04-2016 PP4_RS03130 292e61faa66fcdf8a6ff5d00d539a937 271 PANTHER PTHR30164 1 269 2.8E-96 T 22-04-2016 PP4_RS03130 292e61faa66fcdf8a6ff5d00d539a937 271 Pfam PF06167 Glucose-regulated metallo-peptidase M90 5 249 7.6E-88 T 22-04-2016 IPR010384 MtfA family PP4_RS03130 292e61faa66fcdf8a6ff5d00d539a937 271 Gene3D G3DSA:3.40.390.10 39 250 1.1E-31 T 22-04-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 PP4_RS03130 292e61faa66fcdf8a6ff5d00d539a937 271 SUPERFAMILY SSF55486 39 251 3.66E-40 T 22-04-2016 PP4_RS21845 eeb5b5460b8d31454cb278eab706b43d 426 Gene3D G3DSA:1.20.1250.20 232 410 4.0E-15 T 22-04-2016 PP4_RS21845 eeb5b5460b8d31454cb278eab706b43d 426 SUPERFAMILY SSF103473 26 414 7.85E-48 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS21845 eeb5b5460b8d31454cb278eab706b43d 426 TIGRFAM TIGR00896 CynX: cyanate transporter 43 393 2.5E-139 T 22-04-2016 IPR004747 Cyanate transport system protein GO:0016021 PP4_RS21845 eeb5b5460b8d31454cb278eab706b43d 426 PANTHER PTHR23523 22 426 4.0E-161 T 22-04-2016 PP4_RS21845 eeb5b5460b8d31454cb278eab706b43d 426 Gene3D G3DSA:1.20.1250.20 37 219 2.3E-15 T 22-04-2016 PP4_RS21845 eeb5b5460b8d31454cb278eab706b43d 426 Pfam PF07690 Major Facilitator Superfamily 61 375 4.0E-17 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS21845 eeb5b5460b8d31454cb278eab706b43d 426 PANTHER PTHR23523:SF2 22 426 4.0E-161 T 22-04-2016 PP4_RS20655 442934f66d83da76d5ebf98fd9f96001 431 Hamap MF_00027 Cobyrinate a,c-diamide synthase [cbiA]. 7 422 36.876 T 22-04-2016 IPR004484 Cobyrinic acid a,c-diamide synthase CbiA GO:0009236|GO:0042242 PP4_RS20655 442934f66d83da76d5ebf98fd9f96001 431 SUPERFAMILY SSF52540 9 195 1.57E-38 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS20655 442934f66d83da76d5ebf98fd9f96001 431 PANTHER PTHR21343 7 430 1.9E-131 T 22-04-2016 PP4_RS20655 442934f66d83da76d5ebf98fd9f96001 431 PANTHER PTHR21343:SF6 7 430 1.9E-131 T 22-04-2016 PP4_RS20655 442934f66d83da76d5ebf98fd9f96001 431 Gene3D G3DSA:3.40.50.880 239 427 4.4E-24 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS20655 442934f66d83da76d5ebf98fd9f96001 431 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 240 420 2.8E-31 T 22-04-2016 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 UniPathway: UPA00148 PP4_RS20655 442934f66d83da76d5ebf98fd9f96001 431 Gene3D G3DSA:3.40.50.300 7 190 1.2E-18 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS20655 442934f66d83da76d5ebf98fd9f96001 431 SUPERFAMILY SSF52317 238 429 1.48E-29 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS20655 442934f66d83da76d5ebf98fd9f96001 431 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 10 160 5.2E-19 T 22-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain PP4_RS20415 25030cc546e8d525d0bbfd31ef73af94 264 Gene3D G3DSA:1.10.3720.10 13 262 3.3E-41 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS20415 25030cc546e8d525d0bbfd31ef73af94 264 SUPERFAMILY SSF161098 12 261 6.54E-43 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS20415 25030cc546e8d525d0bbfd31ef73af94 264 PANTHER PTHR30193 1 263 9.7E-60 T 22-04-2016 PP4_RS20415 25030cc546e8d525d0bbfd31ef73af94 264 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 262 1.3E-14 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS20415 25030cc546e8d525d0bbfd31ef73af94 264 PANTHER PTHR30193:SF20 1 263 9.7E-60 T 22-04-2016 PP4_RS07720 898198a7e102f26a3ca02720a914898f 471 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 270 281 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PP4_RS07720 898198a7e102f26a3ca02720a914898f 471 PANTHER PTHR24960 3 390 3.4E-187 T 22-04-2016 PP4_RS07720 898198a7e102f26a3ca02720a914898f 471 Pfam PF13746 4Fe-4S dicluster domain 217 322 1.4E-45 T 22-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PP4_RS07720 898198a7e102f26a3ca02720a914898f 471 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 352 468 1.4E-28 T 22-04-2016 IPR032879 FixG, C-terminal immunoglobulin-like domain PP4_RS07720 898198a7e102f26a3ca02720a914898f 471 Gene3D G3DSA:3.30.70.20 279 326 1.0E-6 T 22-04-2016 PP4_RS07720 898198a7e102f26a3ca02720a914898f 471 SUPERFAMILY SSF54862 103 125 1.47E-32 T 22-04-2016 PP4_RS07720 898198a7e102f26a3ca02720a914898f 471 SUPERFAMILY SSF54862 172 356 1.47E-32 T 22-04-2016 PP4_RS07720 898198a7e102f26a3ca02720a914898f 471 PANTHER PTHR24960:SF45 3 390 3.4E-187 T 22-04-2016 PP4_RS07720 898198a7e102f26a3ca02720a914898f 471 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 39 468 1.6E-183 T 22-04-2016 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021 PP4_RS07720 898198a7e102f26a3ca02720a914898f 471 Gene3D G3DSA:1.10.1060.10 221 278 1.2E-8 T 22-04-2016 PP4_RS07720 898198a7e102f26a3ca02720a914898f 471 Gene3D G3DSA:2.60.40.10 353 469 1.2E-34 T 22-04-2016 IPR013783 Immunoglobulin-like fold PP4_RS06110 839fb803538adb8a62d0d46dea005c1d 315 PANTHER PTHR12128:SF15 1 292 2.6E-60 T 22-04-2016 PP4_RS06110 839fb803538adb8a62d0d46dea005c1d 315 PIRSF PIRSF001365 1 313 6.7E-61 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS06110 839fb803538adb8a62d0d46dea005c1d 315 Gene3D G3DSA:3.20.20.70 1 312 2.5E-69 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS06110 839fb803538adb8a62d0d46dea005c1d 315 PANTHER PTHR12128 1 292 2.6E-60 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS06110 839fb803538adb8a62d0d46dea005c1d 315 Pfam PF00701 Dihydrodipicolinate synthetase family 6 232 1.5E-26 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS06110 839fb803538adb8a62d0d46dea005c1d 315 PRINTS PR00146 Dihydrodipicolinate synthase signature 131 148 1.8E-8 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS06110 839fb803538adb8a62d0d46dea005c1d 315 PRINTS PR00146 Dihydrodipicolinate synthase signature 39 60 1.8E-8 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS06110 839fb803538adb8a62d0d46dea005c1d 315 PRINTS PR00146 Dihydrodipicolinate synthase signature 72 90 1.8E-8 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS06110 839fb803538adb8a62d0d46dea005c1d 315 SUPERFAMILY SSF51569 5 272 4.08E-50 T 22-04-2016 PP4_RS06110 839fb803538adb8a62d0d46dea005c1d 315 SMART SM01130 5 301 1.3E-40 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS10650 b1149deb5a3511b8d319d032ec77f05a 386 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 123 135 - T 22-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 PP4_RS10650 b1149deb5a3511b8d319d032ec77f05a 386 SUPERFAMILY SSF56645 1 243 5.37E-68 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 PP4_RS10650 b1149deb5a3511b8d319d032ec77f05a 386 PANTHER PTHR10909 1 382 1.5E-231 T 22-04-2016 PP4_RS10650 b1149deb5a3511b8d319d032ec77f05a 386 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 232 380 4.8E-51 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS10650 b1149deb5a3511b8d319d032ec77f05a 386 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 117 1.0E-18 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS10650 b1149deb5a3511b8d319d032ec77f05a 386 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 220 4.8E-25 T 22-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 PP4_RS10650 b1149deb5a3511b8d319d032ec77f05a 386 PANTHER PTHR10909:SF278 1 382 1.5E-231 T 22-04-2016 PP4_RS10650 b1149deb5a3511b8d319d032ec77f05a 386 Gene3D G3DSA:1.10.540.10 1 119 1.1E-24 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS10650 b1149deb5a3511b8d319d032ec77f05a 386 Gene3D G3DSA:1.20.140.10 223 382 3.6E-68 T 22-04-2016 PP4_RS10650 b1149deb5a3511b8d319d032ec77f05a 386 SUPERFAMILY SSF47203 230 382 1.61E-54 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS10650 b1149deb5a3511b8d319d032ec77f05a 386 Gene3D G3DSA:2.40.110.10 121 222 5.4E-37 T 22-04-2016 PP4_RS10650 b1149deb5a3511b8d319d032ec77f05a 386 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 339 358 - T 22-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 PP4_RS06720 22be68b768b2eb064f4a1460baade70b 225 Gene3D G3DSA:3.40.50.2300 3 125 1.1E-38 T 22-04-2016 PP4_RS06720 22be68b768b2eb064f4a1460baade70b 225 SMART SM00448 2 113 4.2E-39 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS06720 22be68b768b2eb064f4a1460baade70b 225 SUPERFAMILY SSF52172 4 125 1.27E-38 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS06720 22be68b768b2eb064f4a1460baade70b 225 PANTHER PTHR26402:SF476 2 223 9.3E-91 T 22-04-2016 PP4_RS06720 22be68b768b2eb064f4a1460baade70b 225 Gene3D G3DSA:1.10.10.10 126 222 1.1E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS06720 22be68b768b2eb064f4a1460baade70b 225 Pfam PF00072 Response regulator receiver domain 5 113 1.6E-26 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS06720 22be68b768b2eb064f4a1460baade70b 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 222 1.2E-13 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS06720 22be68b768b2eb064f4a1460baade70b 225 SUPERFAMILY SSF46894 124 223 3.12E-19 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS06720 22be68b768b2eb064f4a1460baade70b 225 SMART SM00862 147 223 6.8E-14 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS06720 22be68b768b2eb064f4a1460baade70b 225 PANTHER PTHR26402 2 223 9.3E-91 T 22-04-2016 PP4_RS08145 721495be32f2bf5f8c076f0e4bdb2c6a 684 TIGRFAM TIGR01497 kdpB: K+-transporting ATPase, B subunit 23 678 4.4E-289 T 22-04-2016 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 PP4_RS08145 721495be32f2bf5f8c076f0e4bdb2c6a 684 Gene3D G3DSA:2.70.150.10 56 212 9.2E-21 T 22-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 PP4_RS08145 721495be32f2bf5f8c076f0e4bdb2c6a 684 PANTHER PTHR24093 22 589 0.0 T 22-04-2016 PP4_RS08145 721495be32f2bf5f8c076f0e4bdb2c6a 684 PANTHER PTHR24093 627 684 0.0 T 22-04-2016 PP4_RS08145 721495be32f2bf5f8c076f0e4bdb2c6a 684 SUPERFAMILY SSF56784 374 562 4.69E-39 T 22-04-2016 IPR023214 HAD-like domain PP4_RS08145 721495be32f2bf5f8c076f0e4bdb2c6a 684 SUPERFAMILY SSF56784 297 321 4.69E-39 T 22-04-2016 IPR023214 HAD-like domain PP4_RS08145 721495be32f2bf5f8c076f0e4bdb2c6a 684 Gene3D G3DSA:3.40.50.1000 446 565 1.7E-36 T 22-04-2016 IPR023214 HAD-like domain PP4_RS08145 721495be32f2bf5f8c076f0e4bdb2c6a 684 ProSitePatterns PS01229 Hypothetical cof family signature 2. 518 540 - T 22-04-2016 PP4_RS08145 721495be32f2bf5f8c076f0e4bdb2c6a 684 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 373 606 3.2E-45 T 22-04-2016 IPR001757 P-type ATPase GO:0016021 PP4_RS08145 721495be32f2bf5f8c076f0e4bdb2c6a 684 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 79 348 5.8E-29 T 22-04-2016 IPR001757 P-type ATPase GO:0016021 PP4_RS08145 721495be32f2bf5f8c076f0e4bdb2c6a 684 Hamap MF_00285 Potassium-transporting ATPase ATP-binding subunit [kdpB]. 18 682 39.62 T 22-04-2016 IPR006391 P-type ATPase, B chain, subfamily IA GO:0005524|GO:0006813|GO:0008556|GO:0016021 PP4_RS08145 721495be32f2bf5f8c076f0e4bdb2c6a 684 Gene3D G3DSA:3.40.1110.10 320 445 2.0E-37 T 22-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 PP4_RS08145 721495be32f2bf5f8c076f0e4bdb2c6a 684 SUPERFAMILY SSF81665 44 110 6.15E-10 T 22-04-2016 PP4_RS08145 721495be32f2bf5f8c076f0e4bdb2c6a 684 SUPERFAMILY SSF81665 212 303 6.15E-10 T 22-04-2016 PP4_RS08145 721495be32f2bf5f8c076f0e4bdb2c6a 684 Pfam PF00702 haloacid dehalogenase-like hydrolase 306 532 9.5E-33 T 22-04-2016 PP4_RS08145 721495be32f2bf5f8c076f0e4bdb2c6a 684 SUPERFAMILY SSF81653 115 211 1.96E-19 T 22-04-2016 PP4_RS08145 721495be32f2bf5f8c076f0e4bdb2c6a 684 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 158 172 1.6E-23 T 22-04-2016 PP4_RS08145 721495be32f2bf5f8c076f0e4bdb2c6a 684 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 518 537 1.6E-23 T 22-04-2016 PP4_RS08145 721495be32f2bf5f8c076f0e4bdb2c6a 684 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 309 323 1.6E-23 T 22-04-2016 PP4_RS08145 721495be32f2bf5f8c076f0e4bdb2c6a 684 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 443 454 1.6E-23 T 22-04-2016 PP4_RS08145 721495be32f2bf5f8c076f0e4bdb2c6a 684 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 541 553 1.6E-23 T 22-04-2016 PP4_RS08145 721495be32f2bf5f8c076f0e4bdb2c6a 684 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 465 475 1.6E-23 T 22-04-2016 PP4_RS08145 721495be32f2bf5f8c076f0e4bdb2c6a 684 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 311 317 - T 22-04-2016 IPR018303 P-type ATPase, phosphorylation site PP4_RS08145 721495be32f2bf5f8c076f0e4bdb2c6a 684 PANTHER PTHR24093:SF49 22 589 0.0 T 22-04-2016 PP4_RS08145 721495be32f2bf5f8c076f0e4bdb2c6a 684 PANTHER PTHR24093:SF49 627 684 0.0 T 22-04-2016 PP4_RS08145 721495be32f2bf5f8c076f0e4bdb2c6a 684 Pfam PF00122 E1-E2 ATPase 79 300 1.6E-35 T 22-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 PP4_RS04345 632c63514aa5962a986dc65074793c2d 398 SMART SM00864 13 205 6.8E-111 T 22-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 PP4_RS04345 632c63514aa5962a986dc65074793c2d 398 PANTHER PTHR30314:SF3 1 396 2.0E-195 T 22-04-2016 PP4_RS04345 632c63514aa5962a986dc65074793c2d 398 PRINTS PR00423 Cell division protein FtsZ signature 212 233 1.0E-50 T 22-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 PP4_RS04345 632c63514aa5962a986dc65074793c2d 398 PRINTS PR00423 Cell division protein FtsZ signature 98 118 1.0E-50 T 22-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 PP4_RS04345 632c63514aa5962a986dc65074793c2d 398 PRINTS PR00423 Cell division protein FtsZ signature 189 211 1.0E-50 T 22-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 PP4_RS04345 632c63514aa5962a986dc65074793c2d 398 PRINTS PR00423 Cell division protein FtsZ signature 126 147 1.0E-50 T 22-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 PP4_RS04345 632c63514aa5962a986dc65074793c2d 398 ProSitePatterns PS01135 FtsZ protein signature 2. 97 118 - T 22-04-2016 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 PP4_RS04345 632c63514aa5962a986dc65074793c2d 398 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 9 371 37.285 T 22-04-2016 IPR000158 Cell division protein FtsZ GO:0005525 PP4_RS04345 632c63514aa5962a986dc65074793c2d 398 SUPERFAMILY SSF55307 204 319 2.52E-41 T 22-04-2016 IPR008280 Tubulin/FtsZ, C-terminal PP4_RS04345 632c63514aa5962a986dc65074793c2d 398 Gene3D G3DSA:3.40.50.1440 14 214 3.7E-90 T 22-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 PP4_RS04345 632c63514aa5962a986dc65074793c2d 398 Pfam PF12327 FtsZ family, C-terminal domain 222 316 4.4E-35 T 22-04-2016 IPR024757 Cell division protein FtsZ, C-terminal PP4_RS04345 632c63514aa5962a986dc65074793c2d 398 PANTHER PTHR30314 1 396 2.0E-195 T 22-04-2016 PP4_RS04345 632c63514aa5962a986dc65074793c2d 398 ProSitePatterns PS01134 FtsZ protein signature 1. 44 78 - T 22-04-2016 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 PP4_RS04345 632c63514aa5962a986dc65074793c2d 398 SUPERFAMILY SSF52490 14 205 7.59E-68 T 22-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 PP4_RS04345 632c63514aa5962a986dc65074793c2d 398 Gene3D G3DSA:3.30.1330.20 215 319 9.7E-45 T 22-04-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain PP4_RS04345 632c63514aa5962a986dc65074793c2d 398 SMART SM00865 207 325 1.7E-56 T 22-04-2016 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain PP4_RS04345 632c63514aa5962a986dc65074793c2d 398 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 10 331 6.7E-126 T 22-04-2016 IPR000158 Cell division protein FtsZ GO:0005525 PP4_RS04345 632c63514aa5962a986dc65074793c2d 398 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 14 173 5.8E-39 T 22-04-2016 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 PP4_RS26790 f19fb97d228106f581830564f58d8957 660 Gene3D G3DSA:2.30.40.10 49 110 2.9E-17 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PP4_RS26790 f19fb97d228106f581830564f58d8957 660 Gene3D G3DSA:2.30.40.10 538 580 2.9E-17 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PP4_RS26790 f19fb97d228106f581830564f58d8957 660 SUPERFAMILY SSF51338 41 109 1.38E-25 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PP4_RS26790 f19fb97d228106f581830564f58d8957 660 SUPERFAMILY SSF51338 538 584 1.38E-25 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PP4_RS26790 f19fb97d228106f581830564f58d8957 660 PANTHER PTHR22642 49 597 1.7E-170 T 22-04-2016 PP4_RS26790 f19fb97d228106f581830564f58d8957 660 PANTHER PTHR22642:SF2 49 597 1.7E-170 T 22-04-2016 PP4_RS26790 f19fb97d228106f581830564f58d8957 660 Pfam PF07969 Amidohydrolase family 97 579 6.4E-122 T 22-04-2016 IPR013108 Amidohydrolase 3 PP4_RS26790 f19fb97d228106f581830564f58d8957 660 SUPERFAMILY SSF51556 108 170 3.26E-42 T 22-04-2016 IPR032466 Metal-dependent hydrolase PP4_RS26790 f19fb97d228106f581830564f58d8957 660 SUPERFAMILY SSF51556 250 538 3.26E-42 T 22-04-2016 IPR032466 Metal-dependent hydrolase PP4_RS26790 f19fb97d228106f581830564f58d8957 660 Gene3D G3DSA:3.20.20.140 250 530 1.2E-17 T 22-04-2016 PP4_RS12915 bafa425b4fe40d39e0b778cc25d530a3 506 SUPERFAMILY SSF51905 260 420 4.99E-27 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS12915 bafa425b4fe40d39e0b778cc25d530a3 506 Gene3D G3DSA:3.50.50.60 117 217 1.3E-20 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS12915 bafa425b4fe40d39e0b778cc25d530a3 506 PANTHER PTHR22912 102 473 3.4E-100 T 22-04-2016 PP4_RS12915 bafa425b4fe40d39e0b778cc25d530a3 506 SUPERFAMILY SSF51905 118 301 4.46E-38 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS12915 bafa425b4fe40d39e0b778cc25d530a3 506 Gene3D G3DSA:3.50.50.60 218 420 5.7E-43 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS12915 bafa425b4fe40d39e0b778cc25d530a3 506 PANTHER PTHR22912:SF180 102 473 3.4E-100 T 22-04-2016 PP4_RS12915 bafa425b4fe40d39e0b778cc25d530a3 506 SUPERFAMILY SSF55424 423 497 1.92E-15 T 22-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 PP4_RS12915 bafa425b4fe40d39e0b778cc25d530a3 506 Gene3D G3DSA:2.102.10.10 2 101 1.3E-28 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 PP4_RS12915 bafa425b4fe40d39e0b778cc25d530a3 506 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 117 139 3.3E-12 T 22-04-2016 PP4_RS12915 bafa425b4fe40d39e0b778cc25d530a3 506 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 383 390 3.3E-12 T 22-04-2016 PP4_RS12915 bafa425b4fe40d39e0b778cc25d530a3 506 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 345 359 3.3E-12 T 22-04-2016 PP4_RS12915 bafa425b4fe40d39e0b778cc25d530a3 506 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 259 284 3.3E-12 T 22-04-2016 PP4_RS12915 bafa425b4fe40d39e0b778cc25d530a3 506 Gene3D G3DSA:3.30.390.30 430 498 1.6E-9 T 22-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 PP4_RS12915 bafa425b4fe40d39e0b778cc25d530a3 506 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 259 277 7.8E-11 T 22-04-2016 PP4_RS12915 bafa425b4fe40d39e0b778cc25d530a3 506 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 344 360 7.8E-11 T 22-04-2016 PP4_RS12915 bafa425b4fe40d39e0b778cc25d530a3 506 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 368 390 7.8E-11 T 22-04-2016 PP4_RS12915 bafa425b4fe40d39e0b778cc25d530a3 506 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 118 137 7.8E-11 T 22-04-2016 PP4_RS12915 bafa425b4fe40d39e0b778cc25d530a3 506 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 214 232 7.8E-11 T 22-04-2016 PP4_RS12915 bafa425b4fe40d39e0b778cc25d530a3 506 Pfam PF00355 Rieske [2Fe-2S] domain 5 88 4.6E-15 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 PP4_RS12915 bafa425b4fe40d39e0b778cc25d530a3 506 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 119 411 1.8E-47 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS12915 bafa425b4fe40d39e0b778cc25d530a3 506 SUPERFAMILY SSF50022 1 102 2.62E-27 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 PP4_RS13760 3cb4c4f2b461992ba29b22da7bb49cd8 263 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 71 259 7.2E-12 T 22-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 PP4_RS13760 3cb4c4f2b461992ba29b22da7bb49cd8 263 PANTHER PTHR30143 1 262 3.2E-70 T 22-04-2016 PP4_RS13760 3cb4c4f2b461992ba29b22da7bb49cd8 263 SUPERFAMILY SSF56529 1 262 3.27E-72 T 22-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 PP4_RS13760 3cb4c4f2b461992ba29b22da7bb49cd8 263 Gene3D G3DSA:3.90.850.10 2 262 2.0E-79 T 22-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 PP4_RS11380 072c7c61e7b9124a0b09101fad2360e4 1032 SUPERFAMILY SSF82693 794 842 2.43E-10 T 22-04-2016 PP4_RS11380 072c7c61e7b9124a0b09101fad2360e4 1032 SUPERFAMILY SSF82693 668 707 2.43E-10 T 22-04-2016 PP4_RS11380 072c7c61e7b9124a0b09101fad2360e4 1032 Pfam PF00873 AcrB/AcrD/AcrF family 4 1014 0.0 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS11380 072c7c61e7b9124a0b09101fad2360e4 1032 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 2.1E-80 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS11380 072c7c61e7b9124a0b09101fad2360e4 1032 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 2.1E-80 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS11380 072c7c61e7b9124a0b09101fad2360e4 1032 PRINTS PR00702 Acriflavin resistance protein family signature 611 625 2.1E-80 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS11380 072c7c61e7b9124a0b09101fad2360e4 1032 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 2.1E-80 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS11380 072c7c61e7b9124a0b09101fad2360e4 1032 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 2.1E-80 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS11380 072c7c61e7b9124a0b09101fad2360e4 1032 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 2.1E-80 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS11380 072c7c61e7b9124a0b09101fad2360e4 1032 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 2.1E-80 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS11380 072c7c61e7b9124a0b09101fad2360e4 1032 PRINTS PR00702 Acriflavin resistance protein family signature 544 561 2.1E-80 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS11380 072c7c61e7b9124a0b09101fad2360e4 1032 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 2.1E-80 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS11380 072c7c61e7b9124a0b09101fad2360e4 1032 Gene3D G3DSA:3.30.70.1430 40 141 1.0E-29 T 22-04-2016 PP4_RS11380 072c7c61e7b9124a0b09101fad2360e4 1032 SUPERFAMILY SSF82693 40 133 9.94E-24 T 22-04-2016 PP4_RS11380 072c7c61e7b9124a0b09101fad2360e4 1032 PANTHER PTHR32063 1 1022 0.0 T 22-04-2016 PP4_RS11380 072c7c61e7b9124a0b09101fad2360e4 1032 SUPERFAMILY SSF82693 136 182 1.2E-22 T 22-04-2016 PP4_RS11380 072c7c61e7b9124a0b09101fad2360e4 1032 SUPERFAMILY SSF82693 268 324 1.2E-22 T 22-04-2016 PP4_RS11380 072c7c61e7b9124a0b09101fad2360e4 1032 Gene3D G3DSA:3.30.2090.10 709 792 4.0E-18 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS11380 072c7c61e7b9124a0b09101fad2360e4 1032 Gene3D G3DSA:3.30.2090.10 184 266 5.9E-16 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS11380 072c7c61e7b9124a0b09101fad2360e4 1032 SUPERFAMILY SSF82866 290 490 2.62E-49 T 22-04-2016 PP4_RS11380 072c7c61e7b9124a0b09101fad2360e4 1032 SUPERFAMILY SSF82714 709 792 1.31E-17 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS11380 072c7c61e7b9124a0b09101fad2360e4 1032 SUPERFAMILY SSF82866 817 1016 2.35E-45 T 22-04-2016 PP4_RS11380 072c7c61e7b9124a0b09101fad2360e4 1032 Gene3D G3DSA:1.10.3850.10 799 1016 1.9E-53 T 22-04-2016 PP4_RS11380 072c7c61e7b9124a0b09101fad2360e4 1032 SUPERFAMILY SSF82693 557 655 1.91E-15 T 22-04-2016 PP4_RS11380 072c7c61e7b9124a0b09101fad2360e4 1032 SUPERFAMILY SSF82714 184 266 4.71E-15 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS11380 072c7c61e7b9124a0b09101fad2360e4 1032 PANTHER PTHR32063:SF21 1 1022 0.0 T 22-04-2016 PP4_RS11380 072c7c61e7b9124a0b09101fad2360e4 1032 Gene3D G3DSA:1.20.1640.10 285 498 1.1E-60 T 22-04-2016 PP4_RS11380 072c7c61e7b9124a0b09101fad2360e4 1032 Gene3D G3DSA:3.30.70.1430 560 650 1.4E-8 T 22-04-2016 PP4_RS26645 e5b78d99da73285e82b05a3ac6a30801 419 Gene3D G3DSA:3.40.50.300 132 418 1.0E-106 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26645 e5b78d99da73285e82b05a3ac6a30801 419 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 419 253.12 T 22-04-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 PP4_RS26645 e5b78d99da73285e82b05a3ac6a30801 419 PANTHER PTHR15184 102 402 2.9E-194 T 22-04-2016 PP4_RS26645 e5b78d99da73285e82b05a3ac6a30801 419 PANTHER PTHR15184 11 51 2.9E-194 T 22-04-2016 PP4_RS26645 e5b78d99da73285e82b05a3ac6a30801 419 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 160 363 1.1E-23 T 22-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PP4_RS26645 e5b78d99da73285e82b05a3ac6a30801 419 Pfam PF07497 Rho termination factor, RNA-binding domain 52 125 2.3E-32 T 22-04-2016 IPR011113 Rho termination factor, RNA-binding GO:0003723|GO:0006353 PP4_RS26645 e5b78d99da73285e82b05a3ac6a30801 419 Pfam PF07498 Rho termination factor, N-terminal domain 5 47 1.6E-18 T 22-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 PP4_RS26645 e5b78d99da73285e82b05a3ac6a30801 419 SMART SM00959 5 47 2.7E-19 T 22-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 PP4_RS26645 e5b78d99da73285e82b05a3ac6a30801 419 SUPERFAMILY SSF50249 49 125 1.71E-29 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS26645 e5b78d99da73285e82b05a3ac6a30801 419 Gene3D G3DSA:2.40.50.140 49 117 1.4E-36 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS26645 e5b78d99da73285e82b05a3ac6a30801 419 TIGRFAM TIGR00767 rho: transcription termination factor Rho 2 417 8.6E-219 T 22-04-2016 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 PP4_RS26645 e5b78d99da73285e82b05a3ac6a30801 419 SMART SM00357 52 118 6.6E-19 T 22-04-2016 IPR011129 Cold shock protein GO:0003676 PP4_RS26645 e5b78d99da73285e82b05a3ac6a30801 419 SUPERFAMILY SSF68912 1 46 1.14E-12 T 22-04-2016 IPR011112 Rho termination factor, N-terminal GO:0006353 PP4_RS26645 e5b78d99da73285e82b05a3ac6a30801 419 SUPERFAMILY SSF52540 90 371 6.68E-68 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26645 e5b78d99da73285e82b05a3ac6a30801 419 PANTHER PTHR15184:SF34 102 402 2.9E-194 T 22-04-2016 PP4_RS26645 e5b78d99da73285e82b05a3ac6a30801 419 PANTHER PTHR15184:SF34 11 51 2.9E-194 T 22-04-2016 PP4_RS26645 e5b78d99da73285e82b05a3ac6a30801 419 Gene3D G3DSA:1.10.720.10 1 47 9.7E-23 T 22-04-2016 PP4_RS26645 e5b78d99da73285e82b05a3ac6a30801 419 SMART SM00382 170 355 2.8E-9 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS09860 fb7343164ebbb60b3c0cf0f176663267 302 PANTHER PTHR30126 4 242 8.6E-52 T 22-04-2016 PP4_RS09860 fb7343164ebbb60b3c0cf0f176663267 302 Gene3D G3DSA:1.10.10.10 4 79 4.8E-26 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS09860 fb7343164ebbb60b3c0cf0f176663267 302 Gene3D G3DSA:3.40.190.10 92 181 8.1E-14 T 22-04-2016 PP4_RS09860 fb7343164ebbb60b3c0cf0f176663267 302 Gene3D G3DSA:3.40.190.10 182 269 3.0E-24 T 22-04-2016 PP4_RS09860 fb7343164ebbb60b3c0cf0f176663267 302 SUPERFAMILY SSF46785 4 114 5.9E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS09860 fb7343164ebbb60b3c0cf0f176663267 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 1.1E-21 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS09860 fb7343164ebbb60b3c0cf0f176663267 302 Pfam PF03466 LysR substrate binding domain 91 297 5.2E-33 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS09860 fb7343164ebbb60b3c0cf0f176663267 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 4.6E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS09860 fb7343164ebbb60b3c0cf0f176663267 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 4.6E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS09860 fb7343164ebbb60b3c0cf0f176663267 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 4.6E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS09860 fb7343164ebbb60b3c0cf0f176663267 302 SUPERFAMILY SSF53850 92 296 3.67E-32 T 22-04-2016 PP4_RS04750 4337069d0f374200b7d9fd35bef5a37c 1050 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1046 0.0 T 22-04-2016 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 PP4_RS04750 4337069d0f374200b7d9fd35bef5a37c 1050 SUPERFAMILY SSF82693 135 182 2.27E-24 T 22-04-2016 PP4_RS04750 4337069d0f374200b7d9fd35bef5a37c 1050 Pfam PF00873 AcrB/AcrD/AcrF family 1 1026 0.0 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS04750 4337069d0f374200b7d9fd35bef5a37c 1050 SUPERFAMILY SSF82693 673 722 1.91E-27 T 22-04-2016 PP4_RS04750 4337069d0f374200b7d9fd35bef5a37c 1050 SUPERFAMILY SSF82693 809 857 1.91E-27 T 22-04-2016 PP4_RS04750 4337069d0f374200b7d9fd35bef5a37c 1050 SUPERFAMILY SSF82693 274 330 2.27E-24 T 22-04-2016 PP4_RS04750 4337069d0f374200b7d9fd35bef5a37c 1050 Gene3D G3DSA:1.20.1640.10 291 506 7.5E-57 T 22-04-2016 PP4_RS04750 4337069d0f374200b7d9fd35bef5a37c 1050 Gene3D G3DSA:3.30.70.1430 38 139 2.8E-34 T 22-04-2016 PP4_RS04750 4337069d0f374200b7d9fd35bef5a37c 1050 SUPERFAMILY SSF82866 832 1024 1.31E-45 T 22-04-2016 PP4_RS04750 4337069d0f374200b7d9fd35bef5a37c 1050 SUPERFAMILY SSF82714 723 810 4.45E-23 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS04750 4337069d0f374200b7d9fd35bef5a37c 1050 PANTHER PTHR32063 1 1049 0.0 T 22-04-2016 PP4_RS04750 4337069d0f374200b7d9fd35bef5a37c 1050 SUPERFAMILY SSF82693 567 670 2.82E-30 T 22-04-2016 PP4_RS04750 4337069d0f374200b7d9fd35bef5a37c 1050 SUPERFAMILY SSF82693 38 130 1.74E-27 T 22-04-2016 PP4_RS04750 4337069d0f374200b7d9fd35bef5a37c 1050 PANTHER PTHR32063:SF13 1 1049 0.0 T 22-04-2016 PP4_RS04750 4337069d0f374200b7d9fd35bef5a37c 1050 Gene3D G3DSA:3.30.70.1430 569 670 3.1E-36 T 22-04-2016 PP4_RS04750 4337069d0f374200b7d9fd35bef5a37c 1050 Gene3D G3DSA:3.30.2090.10 722 810 4.1E-27 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS04750 4337069d0f374200b7d9fd35bef5a37c 1050 SUPERFAMILY SSF82866 296 497 2.09E-47 T 22-04-2016 PP4_RS04750 4337069d0f374200b7d9fd35bef5a37c 1050 PRINTS PR00702 Acriflavin resistance protein family signature 470 493 8.2E-110 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS04750 4337069d0f374200b7d9fd35bef5a37c 1050 PRINTS PR00702 Acriflavin resistance protein family signature 336 359 8.2E-110 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS04750 4337069d0f374200b7d9fd35bef5a37c 1050 PRINTS PR00702 Acriflavin resistance protein family signature 445 468 8.2E-110 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS04750 4337069d0f374200b7d9fd35bef5a37c 1050 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 8.2E-110 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS04750 4337069d0f374200b7d9fd35bef5a37c 1050 PRINTS PR00702 Acriflavin resistance protein family signature 363 384 8.2E-110 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS04750 4337069d0f374200b7d9fd35bef5a37c 1050 PRINTS PR00702 Acriflavin resistance protein family signature 554 571 8.2E-110 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS04750 4337069d0f374200b7d9fd35bef5a37c 1050 PRINTS PR00702 Acriflavin resistance protein family signature 623 637 8.2E-110 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS04750 4337069d0f374200b7d9fd35bef5a37c 1050 PRINTS PR00702 Acriflavin resistance protein family signature 391 415 8.2E-110 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS04750 4337069d0f374200b7d9fd35bef5a37c 1050 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 8.2E-110 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS04750 4337069d0f374200b7d9fd35bef5a37c 1050 SUPERFAMILY SSF82714 182 271 1.44E-19 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS04750 4337069d0f374200b7d9fd35bef5a37c 1050 Gene3D G3DSA:3.30.2090.10 181 275 5.4E-23 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS04750 4337069d0f374200b7d9fd35bef5a37c 1050 Gene3D G3DSA:1.10.3850.10 815 1025 1.2E-56 T 22-04-2016 PP4_RS04735 206eae7fe68f0828f5fa634299c9e246 307 PANTHER PTHR30419:SF7 1 295 5.1E-113 T 22-04-2016 PP4_RS04735 206eae7fe68f0828f5fa634299c9e246 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.7E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS04735 206eae7fe68f0828f5fa634299c9e246 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.7E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS04735 206eae7fe68f0828f5fa634299c9e246 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.7E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS04735 206eae7fe68f0828f5fa634299c9e246 307 Pfam PF03466 LysR substrate binding domain 89 294 2.7E-28 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS04735 206eae7fe68f0828f5fa634299c9e246 307 SUPERFAMILY SSF53850 91 296 5.97E-33 T 22-04-2016 PP4_RS04735 206eae7fe68f0828f5fa634299c9e246 307 SUPERFAMILY SSF46785 1 110 1.6E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS04735 206eae7fe68f0828f5fa634299c9e246 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 3.2E-19 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS04735 206eae7fe68f0828f5fa634299c9e246 307 Gene3D G3DSA:3.40.190.10 182 263 4.8E-8 T 22-04-2016 PP4_RS04735 206eae7fe68f0828f5fa634299c9e246 307 PANTHER PTHR30419 1 295 5.1E-113 T 22-04-2016 PP4_RS04735 206eae7fe68f0828f5fa634299c9e246 307 Gene3D G3DSA:1.10.10.10 1 85 2.6E-26 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS04735 206eae7fe68f0828f5fa634299c9e246 307 Gene3D G3DSA:3.40.190.10 88 181 5.0E-15 T 22-04-2016 PP4_RS03360 d6c2c62795c41851cddcd790d04f0f60 136 Gene3D G3DSA:1.10.1660.10 1 54 6.6E-27 T 22-04-2016 PP4_RS03360 d6c2c62795c41851cddcd790d04f0f60 136 SUPERFAMILY SSF46955 1 126 7.69E-40 T 22-04-2016 IPR009061 Putative DNA-binding domain PP4_RS03360 d6c2c62795c41851cddcd790d04f0f60 136 PANTHER PTHR30204:SF16 1 136 3.7E-66 T 22-04-2016 PP4_RS03360 d6c2c62795c41851cddcd790d04f0f60 136 SMART SM00422 1 70 7.3E-33 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS03360 d6c2c62795c41851cddcd790d04f0f60 136 TIGRFAM TIGR02044 CueR: Cu(I)-responsive transcriptional regulator 1 126 1.4E-55 T 22-04-2016 IPR011789 Cu(I)-responsive transcriptional regulator GO:0003677|GO:0003700|GO:0005507|GO:0045893 PP4_RS03360 d6c2c62795c41851cddcd790d04f0f60 136 ProSitePatterns PS00552 MerR-type HTH domain signature. 4 26 - T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS03360 d6c2c62795c41851cddcd790d04f0f60 136 Pfam PF09278 MerR, DNA binding 45 107 1.1E-20 T 22-04-2016 IPR015358 Transcription regulator MerR, DNA binding PP4_RS03360 d6c2c62795c41851cddcd790d04f0f60 136 Pfam PF00376 MerR family regulatory protein 2 39 3.4E-17 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS03360 d6c2c62795c41851cddcd790d04f0f60 136 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 3.3E-9 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS03360 d6c2c62795c41851cddcd790d04f0f60 136 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 37 57 3.3E-9 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS03360 d6c2c62795c41851cddcd790d04f0f60 136 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 3.3E-9 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS03360 d6c2c62795c41851cddcd790d04f0f60 136 Gene3D G3DSA:1.10.1660.10 55 131 7.2E-31 T 22-04-2016 PP4_RS03360 d6c2c62795c41851cddcd790d04f0f60 136 PANTHER PTHR30204 1 136 3.7E-66 T 22-04-2016 PP4_RS23545 da6638708e680eaf10221079a4cacf80 105 PANTHER PTHR40261:SF2 1 104 2.9E-36 T 22-04-2016 PP4_RS23545 da6638708e680eaf10221079a4cacf80 105 PANTHER PTHR40261 1 104 2.9E-36 T 22-04-2016 PP4_RS23545 da6638708e680eaf10221079a4cacf80 105 SUPERFAMILY SSF50022 3 103 5.89E-23 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 PP4_RS23545 da6638708e680eaf10221079a4cacf80 105 Gene3D G3DSA:2.102.10.10 3 103 1.2E-21 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 PP4_RS23545 da6638708e680eaf10221079a4cacf80 105 Pfam PF00355 Rieske [2Fe-2S] domain 3 86 2.4E-11 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 PP4_RS02350 f671b5e1722e5c38c345d3d6615d3322 344 Gene3D G3DSA:3.30.360.10 159 312 6.8E-60 T 22-04-2016 PP4_RS02350 f671b5e1722e5c38c345d3d6615d3322 344 SMART SM00859 3 142 1.1E-62 T 22-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 PP4_RS02350 f671b5e1722e5c38c345d3d6615d3322 344 Hamap MF_00150 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 2 338 42.537 T 22-04-2016 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PP4_RS02350 f671b5e1722e5c38c345d3d6615d3322 344 PANTHER PTHR32338 1 344 2.7E-179 T 22-04-2016 PP4_RS02350 f671b5e1722e5c38c345d3d6615d3322 344 TIGRFAM TIGR01850 argC: N-acetyl-gamma-glutamyl-phosphate reductase 2 344 2.3E-131 T 22-04-2016 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 GO:0003942|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PP4_RS02350 f671b5e1722e5c38c345d3d6615d3322 344 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 161 315 3.7E-16 T 22-04-2016 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PP4_RS02350 f671b5e1722e5c38c345d3d6615d3322 344 PANTHER PTHR32338:SF8 1 344 2.7E-179 T 22-04-2016 PP4_RS02350 f671b5e1722e5c38c345d3d6615d3322 344 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 3 142 5.3E-38 T 22-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 PP4_RS02350 f671b5e1722e5c38c345d3d6615d3322 344 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 145 161 - T 22-04-2016 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PP4_RS02350 f671b5e1722e5c38c345d3d6615d3322 344 SUPERFAMILY SSF55347 150 312 4.58E-51 T 22-04-2016 PP4_RS02350 f671b5e1722e5c38c345d3d6615d3322 344 SUPERFAMILY SSF51735 2 172 2.66E-53 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS02350 f671b5e1722e5c38c345d3d6615d3322 344 Gene3D G3DSA:3.40.50.720 1 158 6.7E-65 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS13600 bcd3d795da8df76ba49d3b1b75e9a52c 315 PANTHER PTHR34075:SF2 1 146 8.4E-28 T 22-04-2016 PP4_RS13600 bcd3d795da8df76ba49d3b1b75e9a52c 315 Gene3D G3DSA:3.10.129.10 188 300 1.3E-25 T 22-04-2016 IPR029069 HotDog domain PP4_RS13600 bcd3d795da8df76ba49d3b1b75e9a52c 315 Pfam PF01575 MaoC like domain 186 291 1.7E-16 T 22-04-2016 IPR002539 MaoC-like domain PP4_RS13600 bcd3d795da8df76ba49d3b1b75e9a52c 315 SUPERFAMILY SSF50249 4 124 7.2E-35 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS13600 bcd3d795da8df76ba49d3b1b75e9a52c 315 Pfam PF01796 DUF35 OB-fold domain, acyl-CoA-associated 55 119 1.8E-18 T 22-04-2016 IPR002878 Domain of unknown function DUF35, OB-fold, C-terminal PP4_RS13600 bcd3d795da8df76ba49d3b1b75e9a52c 315 PANTHER PTHR34075 1 146 8.4E-28 T 22-04-2016 PP4_RS13600 bcd3d795da8df76ba49d3b1b75e9a52c 315 SUPERFAMILY SSF54637 183 300 1.69E-25 T 22-04-2016 IPR029069 HotDog domain PP4_RS13600 bcd3d795da8df76ba49d3b1b75e9a52c 315 Pfam PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) 18 53 3.3E-13 T 22-04-2016 IPR022002 Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal PP4_RS20220 64e75ff10557d6a8f9cddedfc0953ad8 310 SMART SM00450 114 215 2.2E-16 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS20220 64e75ff10557d6a8f9cddedfc0953ad8 310 Pfam PF00581 Rhodanese-like domain 116 209 2.9E-6 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS20220 64e75ff10557d6a8f9cddedfc0953ad8 310 Hamap MF_00469 UPF0176 protein YceA [yceA]. 3 255 46.15 T 22-04-2016 IPR020936 Uncharacterised protein family UPF0176 PP4_RS20220 64e75ff10557d6a8f9cddedfc0953ad8 310 SUPERFAMILY SSF52821 91 226 2.74E-29 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS20220 64e75ff10557d6a8f9cddedfc0953ad8 310 PANTHER PTHR22778:SF12 3 291 3.4E-109 T 22-04-2016 PP4_RS20220 64e75ff10557d6a8f9cddedfc0953ad8 310 PANTHER PTHR22778 3 291 3.4E-109 T 22-04-2016 PP4_RS20220 64e75ff10557d6a8f9cddedfc0953ad8 310 Gene3D G3DSA:3.40.250.10 105 227 7.6E-39 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS12025 952471f8227a1a1fb6856f2a202dbf13 221 Pfam PF02630 SCO1/SenC 68 148 4.8E-13 T 22-04-2016 IPR003782 Copper chaperone SCO1/SenC PP4_RS12025 952471f8227a1a1fb6856f2a202dbf13 221 PANTHER PTHR12151 65 212 2.0E-21 T 22-04-2016 IPR003782 Copper chaperone SCO1/SenC PP4_RS12025 952471f8227a1a1fb6856f2a202dbf13 221 PANTHER PTHR12151:SF0 65 212 2.0E-21 T 22-04-2016 PP4_RS12025 952471f8227a1a1fb6856f2a202dbf13 221 Gene3D G3DSA:3.40.30.10 18 23 7.3E-30 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS12025 952471f8227a1a1fb6856f2a202dbf13 221 Gene3D G3DSA:3.40.30.10 57 215 7.3E-30 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS12025 952471f8227a1a1fb6856f2a202dbf13 221 SUPERFAMILY SSF52833 61 215 1.82E-29 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS00665 f0987235b9d6ae8d4a20e4d5af46e1dc 263 SUPERFAMILY SSF52540 7 235 3.44E-59 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS00665 f0987235b9d6ae8d4a20e4d5af46e1dc 263 Pfam PF00005 ABC transporter 24 173 1.1E-29 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS00665 f0987235b9d6ae8d4a20e4d5af46e1dc 263 SMART SM00382 32 222 5.6E-14 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS00665 f0987235b9d6ae8d4a20e4d5af46e1dc 263 PANTHER PTHR24220 9 248 2.2E-137 T 22-04-2016 PP4_RS00665 f0987235b9d6ae8d4a20e4d5af46e1dc 263 PANTHER PTHR24220:SF483 9 248 2.2E-137 T 22-04-2016 PP4_RS00665 f0987235b9d6ae8d4a20e4d5af46e1dc 263 Gene3D G3DSA:3.40.50.300 4 236 6.2E-62 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS00665 f0987235b9d6ae8d4a20e4d5af46e1dc 263 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS10095 117a312026833e0aa02581a17b153503 339 ProSitePatterns PS01173 Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 104 120 - T 22-04-2016 IPR002168 Lipase, GDXG, putative histidine active site GO:0008152|GO:0016787 PP4_RS10095 117a312026833e0aa02581a17b153503 339 Gene3D G3DSA:3.40.50.1820 26 338 1.7E-95 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS10095 117a312026833e0aa02581a17b153503 339 Pfam PF07859 alpha/beta hydrolase fold 105 311 1.1E-71 T 22-04-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 PP4_RS10095 117a312026833e0aa02581a17b153503 339 SUPERFAMILY SSF53474 46 338 5.22E-70 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS10095 117a312026833e0aa02581a17b153503 339 PANTHER PTHR23024 86 330 8.4E-95 T 22-04-2016 PP4_RS10095 117a312026833e0aa02581a17b153503 339 PANTHER PTHR23024:SF128 86 330 8.4E-95 T 22-04-2016 PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 SMART SM00062 302 521 1.8E-24 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 SMART SM00062 57 278 6.9E-17 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 SUPERFAMILY SSF52172 960 1096 4.7E-31 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 Pfam PF08448 PAS fold 582 692 2.0E-8 T 22-04-2016 IPR013656 PAS fold-4 PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 Gene3D G3DSA:3.30.450.20 561 688 2.8E-13 T 22-04-2016 PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 PRINTS PR00344 Bacterial sensor protein C-terminal signature 900 918 6.3E-13 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 PRINTS PR00344 Bacterial sensor protein C-terminal signature 924 937 6.3E-13 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 PRINTS PR00344 Bacterial sensor protein C-terminal signature 865 879 6.3E-13 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 PRINTS PR00344 Bacterial sensor protein C-terminal signature 883 893 6.3E-13 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 SMART SM00448 961 1077 5.5E-27 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 59 261 1.3E-19 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 304 518 6.0E-27 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 Gene3D G3DSA:1.20.120.160 1088 1169 5.9E-8 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 PANTHER PTHR24423:SF382 559 1119 1.5E-154 T 22-04-2016 PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 PANTHER PTHR24423:SF382 11 20 1.5E-154 T 22-04-2016 PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 SUPERFAMILY SSF55874 766 942 1.44E-44 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 SUPERFAMILY SSF55785 560 688 1.74E-13 T 22-04-2016 IPR000014 PAS domain PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 PANTHER PTHR24423 559 1119 1.5E-154 T 22-04-2016 PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 PANTHER PTHR24423 11 20 1.5E-154 T 22-04-2016 PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 Gene3D G3DSA:3.40.190.10 405 470 9.3E-7 T 22-04-2016 PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 SMART SM00387 823 940 1.1E-35 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 SUPERFAMILY SSF47226 1060 1170 2.22E-14 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 Pfam PF00072 Response regulator receiver domain 963 1077 1.4E-23 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 Gene3D G3DSA:3.40.50.2300 960 1087 1.9E-31 T 22-04-2016 PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 SUPERFAMILY SSF53850 58 275 1.56E-30 T 22-04-2016 PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 SMART SM00388 710 776 1.6E-18 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 Gene3D G3DSA:3.40.190.10 56 169 1.6E-10 T 22-04-2016 PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 Pfam PF01627 Hpt domain 1115 1168 4.5E-5 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 Gene3D G3DSA:1.10.287.130 702 772 2.9E-14 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 Pfam PF00512 His Kinase A (phospho-acceptor) domain 710 776 1.5E-14 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 Gene3D G3DSA:3.40.190.10 297 404 8.8E-15 T 22-04-2016 PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 824 939 3.9E-25 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 SUPERFAMILY SSF47384 693 777 2.94E-19 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 Gene3D G3DSA:3.30.565.10 777 943 9.7E-44 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS18855 0742c011412a3fc5cb88bbdcef94836c 1210 SUPERFAMILY SSF53850 295 521 3.45E-35 T 22-04-2016 PP4_RS12570 aae375930e8ac10d04ce884d63ac1863 572 SUPERFAMILY SSF51905 494 561 2.3E-42 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS12570 aae375930e8ac10d04ce884d63ac1863 572 SUPERFAMILY SSF51905 1 142 2.3E-42 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS12570 aae375930e8ac10d04ce884d63ac1863 572 SUPERFAMILY SSF51905 213 309 2.3E-42 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS12570 aae375930e8ac10d04ce884d63ac1863 572 SUPERFAMILY SSF56425 334 500 3.31E-30 T 22-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain PP4_RS12570 aae375930e8ac10d04ce884d63ac1863 572 Gene3D G3DSA:3.90.700.10 340 490 6.3E-26 T 22-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain PP4_RS12570 aae375930e8ac10d04ce884d63ac1863 572 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 5.1E-7 T 22-04-2016 PP4_RS12570 aae375930e8ac10d04ce884d63ac1863 572 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 516 531 5.1E-7 T 22-04-2016 PP4_RS12570 aae375930e8ac10d04ce884d63ac1863 572 Gene3D G3DSA:3.50.50.60 203 312 8.0E-62 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS12570 aae375930e8ac10d04ce884d63ac1863 572 Gene3D G3DSA:3.50.50.60 496 557 8.0E-62 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS12570 aae375930e8ac10d04ce884d63ac1863 572 Gene3D G3DSA:3.50.50.60 2 134 8.0E-62 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS12570 aae375930e8ac10d04ce884d63ac1863 572 Pfam PF00890 FAD binding domain 7 541 6.3E-97 T 22-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain PP4_RS12570 aae375930e8ac10d04ce884d63ac1863 572 PANTHER PTHR11632:SF59 198 556 8.0E-191 T 22-04-2016 PP4_RS12570 aae375930e8ac10d04ce884d63ac1863 572 PANTHER PTHR11632:SF59 1 125 8.0E-191 T 22-04-2016 PP4_RS12570 aae375930e8ac10d04ce884d63ac1863 572 PANTHER PTHR11632 198 556 8.0E-191 T 22-04-2016 PP4_RS12570 aae375930e8ac10d04ce884d63ac1863 572 PANTHER PTHR11632 1 125 8.0E-191 T 22-04-2016 PP4_RS23105 6f36b384d539877cf7b0d8d853bead77 322 PANTHER PTHR12001:SF47 4 322 1.1E-117 T 22-04-2016 PP4_RS23105 6f36b384d539877cf7b0d8d853bead77 322 Pfam PF00348 Polyprenyl synthetase 31 270 5.3E-71 T 22-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 PP4_RS23105 6f36b384d539877cf7b0d8d853bead77 322 SUPERFAMILY SSF48576 5 321 1.43E-98 T 22-04-2016 IPR008949 Isoprenoid synthase domain PP4_RS23105 6f36b384d539877cf7b0d8d853bead77 322 PANTHER PTHR12001 4 322 1.1E-117 T 22-04-2016 IPR017446 Polyprenyl synthetase-related PP4_RS23105 6f36b384d539877cf7b0d8d853bead77 322 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 203 215 - T 22-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 PP4_RS23105 6f36b384d539877cf7b0d8d853bead77 322 Gene3D G3DSA:1.10.600.10 4 321 1.3E-101 T 22-04-2016 IPR008949 Isoprenoid synthase domain PP4_RS23105 6f36b384d539877cf7b0d8d853bead77 322 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 81 95 - T 22-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 PP4_RS16470 4c83ebcbf95408d4d9f7daecfb178d5e 272 Gene3D G3DSA:3.40.50.720 108 245 3.4E-38 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS16470 4c83ebcbf95408d4d9f7daecfb178d5e 272 SUPERFAMILY SSF53223 2 100 1.38E-25 T 22-04-2016 PP4_RS16470 4c83ebcbf95408d4d9f7daecfb178d5e 272 Gene3D G3DSA:3.40.192.10 2 107 3.2E-28 T 22-04-2016 PP4_RS16470 4c83ebcbf95408d4d9f7daecfb178d5e 272 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 117 192 4.0E-8 T 22-04-2016 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase PP4_RS16470 4c83ebcbf95408d4d9f7daecfb178d5e 272 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 7 88 7.8E-18 T 22-04-2016 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 PP4_RS16470 4c83ebcbf95408d4d9f7daecfb178d5e 272 SUPERFAMILY SSF51735 102 266 4.82E-37 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS16470 4c83ebcbf95408d4d9f7daecfb178d5e 272 PANTHER PTHR21089:SF2 3 267 4.6E-108 T 22-04-2016 PP4_RS16470 4c83ebcbf95408d4d9f7daecfb178d5e 272 PANTHER PTHR21089 3 267 4.6E-108 T 22-04-2016 PP4_RS16470 4c83ebcbf95408d4d9f7daecfb178d5e 272 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 5 267 5.6E-69 T 22-04-2016 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 PP4_RS16470 4c83ebcbf95408d4d9f7daecfb178d5e 272 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 2 270 28.908 T 22-04-2016 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 PP4_RS06185 fae8179160daff8a8c0b52f616b82d92 310 PANTHER PTHR10996 35 308 1.6E-94 T 22-04-2016 PP4_RS06185 fae8179160daff8a8c0b52f616b82d92 310 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 103 274 3.2E-40 T 22-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 PP4_RS06185 fae8179160daff8a8c0b52f616b82d92 310 Gene3D G3DSA:3.40.50.720 96 275 3.9E-45 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS06185 fae8179160daff8a8c0b52f616b82d92 310 SUPERFAMILY SSF51735 95 275 1.07E-39 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS06185 fae8179160daff8a8c0b52f616b82d92 310 PANTHER PTHR10996:SF148 35 308 1.6E-94 T 22-04-2016 PP4_RS02600 2fc59ce5c320d6e5c9939d15a314e3d8 144 SUPERFAMILY SSF52080 4 142 3.92E-45 T 22-04-2016 IPR021131 Ribosomal protein L18e/L15P PP4_RS02600 2fc59ce5c320d6e5c9939d15a314e3d8 144 ProSitePatterns PS00475 Ribosomal protein L15 signature. 109 139 - T 22-04-2016 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02600 2fc59ce5c320d6e5c9939d15a314e3d8 144 PANTHER PTHR12934 1 144 1.1E-70 T 22-04-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 PP4_RS02600 2fc59ce5c320d6e5c9939d15a314e3d8 144 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 142 5.0E-46 T 22-04-2016 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 PP4_RS02600 2fc59ce5c320d6e5c9939d15a314e3d8 144 Gene3D G3DSA:3.100.10.10 32 143 2.2E-25 T 22-04-2016 PP4_RS02600 2fc59ce5c320d6e5c9939d15a314e3d8 144 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 143 6.4E-30 T 22-04-2016 IPR021131 Ribosomal protein L18e/L15P PP4_RS02600 2fc59ce5c320d6e5c9939d15a314e3d8 144 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 144 18.483 T 22-04-2016 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 PP4_RS15360 f8f8f8af9bbe0a56d277552a254a4564 630 Pfam PF02333 Phytase 126 216 2.9E-7 T 22-04-2016 IPR003431 Beta propeller phytase GO:0016158 KEGG: 00562+3.1.3.8|MetaCyc: PWY-4702 PP4_RS15360 f8f8f8af9bbe0a56d277552a254a4564 630 Pfam PF02333 Phytase 311 628 5.9E-82 T 22-04-2016 IPR003431 Beta propeller phytase GO:0016158 KEGG: 00562+3.1.3.8|MetaCyc: PWY-4702 PP4_RS15360 f8f8f8af9bbe0a56d277552a254a4564 630 SUPERFAMILY SSF50956 309 629 1.31E-77 T 22-04-2016 PP4_RS15360 f8f8f8af9bbe0a56d277552a254a4564 630 Gene3D G3DSA:2.120.10.20 57 280 1.5E-41 T 22-04-2016 IPR003431 Beta propeller phytase GO:0016158 KEGG: 00562+3.1.3.8|MetaCyc: PWY-4702 PP4_RS15360 f8f8f8af9bbe0a56d277552a254a4564 630 Gene3D G3DSA:2.120.10.20 309 629 4.7E-117 T 22-04-2016 IPR003431 Beta propeller phytase GO:0016158 KEGG: 00562+3.1.3.8|MetaCyc: PWY-4702 PP4_RS15360 f8f8f8af9bbe0a56d277552a254a4564 630 SUPERFAMILY SSF50956 59 272 5.89E-27 T 22-04-2016 PP4_RS14900 d46a5053233dbb80f49d6920af769c02 276 TIGRFAM TIGR00753 undec_PP_bacA: undecaprenyl-diphosphatase UppP 9 257 1.5E-78 T 22-04-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 PP4_RS14900 d46a5053233dbb80f49d6920af769c02 276 Pfam PF02673 Bacitracin resistance protein BacA 9 258 1.4E-78 T 22-04-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 PP4_RS14900 d46a5053233dbb80f49d6920af769c02 276 PANTHER PTHR30622 2 272 3.0E-135 T 22-04-2016 PP4_RS14900 d46a5053233dbb80f49d6920af769c02 276 PANTHER PTHR30622:SF3 2 272 3.0E-135 T 22-04-2016 PP4_RS14900 d46a5053233dbb80f49d6920af769c02 276 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 4 264 17.591 T 22-04-2016 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 PP4_RS24570 5009394891661d57711c1fa74330418e 629 Pfam PF03717 Penicillin-binding Protein dimerisation domain 64 236 1.9E-43 T 22-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 PP4_RS24570 5009394891661d57711c1fa74330418e 629 Gene3D G3DSA:3.40.710.10 250 609 3.6E-111 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS24570 5009394891661d57711c1fa74330418e 629 PANTHER PTHR30627:SF2 5 626 8.2E-253 T 22-04-2016 PP4_RS24570 5009394891661d57711c1fa74330418e 629 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 20 607 5.6E-240 T 22-04-2016 IPR017790 Penicillin-binding protein 2 GO:0016020 UniPathway: UPA00219 PP4_RS24570 5009394891661d57711c1fa74330418e 629 SUPERFAMILY SSF56519 56 250 3.4E-51 T 22-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 PP4_RS24570 5009394891661d57711c1fa74330418e 629 PANTHER PTHR30627 5 626 8.2E-253 T 22-04-2016 PP4_RS24570 5009394891661d57711c1fa74330418e 629 SUPERFAMILY SSF56601 251 607 3.19E-103 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS24570 5009394891661d57711c1fa74330418e 629 Pfam PF00905 Penicillin binding protein transpeptidase domain 268 604 1.0E-78 T 22-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 PP4_RS24570 5009394891661d57711c1fa74330418e 629 Gene3D G3DSA:3.90.1310.10 131 249 3.8E-39 T 22-04-2016 PP4_RS10500 b722e4a13c46ff74548cf2dd82da7906 561 Gene3D G3DSA:3.40.50.970 366 548 7.9E-63 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS10500 b722e4a13c46ff74548cf2dd82da7906 561 SUPERFAMILY SSF52518 369 548 6.61E-60 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS10500 b722e4a13c46ff74548cf2dd82da7906 561 PANTHER PTHR18968:SF120 1 554 3.5E-266 T 22-04-2016 PP4_RS10500 b722e4a13c46ff74548cf2dd82da7906 561 SUPERFAMILY SSF52518 7 184 2.06E-53 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS10500 b722e4a13c46ff74548cf2dd82da7906 561 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 426 445 - T 22-04-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 PP4_RS10500 b722e4a13c46ff74548cf2dd82da7906 561 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 198 331 2.6E-29 T 22-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 PP4_RS10500 b722e4a13c46ff74548cf2dd82da7906 561 PANTHER PTHR18968 1 554 3.5E-266 T 22-04-2016 PP4_RS10500 b722e4a13c46ff74548cf2dd82da7906 561 Gene3D G3DSA:3.40.50.1220 190 335 6.6E-36 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain PP4_RS10500 b722e4a13c46ff74548cf2dd82da7906 561 SUPERFAMILY SSF52467 161 355 8.28E-37 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain PP4_RS10500 b722e4a13c46ff74548cf2dd82da7906 561 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 9 175 1.2E-53 T 22-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 PP4_RS10500 b722e4a13c46ff74548cf2dd82da7906 561 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 390 536 7.5E-43 T 22-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 PP4_RS10500 b722e4a13c46ff74548cf2dd82da7906 561 Gene3D G3DSA:3.40.50.970 3 189 2.0E-62 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS26400 f58de797efe9b30fc7561b70131c62f8 329 Gene3D G3DSA:3.40.50.300 2 237 2.2E-84 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26400 f58de797efe9b30fc7561b70131c62f8 329 PANTHER PTHR24220 4 276 6.5E-140 T 22-04-2016 PP4_RS26400 f58de797efe9b30fc7561b70131c62f8 329 SUPERFAMILY SSF50331 235 322 5.53E-8 T 22-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal PP4_RS26400 f58de797efe9b30fc7561b70131c62f8 329 Pfam PF12857 TOBE-like domain 265 321 2.1E-11 T 22-04-2016 IPR024765 TOBE-like domain KEGG: 00920+3.6.3.25 PP4_RS26400 f58de797efe9b30fc7561b70131c62f8 329 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS26400 f58de797efe9b30fc7561b70131c62f8 329 SMART SM00382 27 214 1.6E-20 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS26400 f58de797efe9b30fc7561b70131c62f8 329 TIGRFAM TIGR00968 3a0106s01: sulfate ABC transporter, ATP-binding protein 3 243 7.4E-120 T 22-04-2016 IPR005666 Sulphate transport system permease protein 1 GO:0006810|GO:0016020|GO:0042626 KEGG: 00920+3.6.3.25 PP4_RS26400 f58de797efe9b30fc7561b70131c62f8 329 Pfam PF00005 ABC transporter 18 164 2.7E-37 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS26400 f58de797efe9b30fc7561b70131c62f8 329 SUPERFAMILY SSF52540 3 243 1.73E-88 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26400 f58de797efe9b30fc7561b70131c62f8 329 PANTHER PTHR24220:SF123 4 276 6.5E-140 T 22-04-2016 PP4_RS24245 6d3a50a15a34f501c0c0a2a14a7bf341 319 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 264 309 - T 22-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PP4_RS24245 6d3a50a15a34f501c0c0a2a14a7bf341 319 Gene3D G3DSA:1.10.10.60 209 263 2.5E-14 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS24245 6d3a50a15a34f501c0c0a2a14a7bf341 319 SMART SM00342 227 313 6.9E-20 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS24245 6d3a50a15a34f501c0c0a2a14a7bf341 319 PANTHER PTHR11019:SF54 47 314 8.6E-36 T 22-04-2016 PP4_RS24245 6d3a50a15a34f501c0c0a2a14a7bf341 319 SUPERFAMILY SSF46689 210 260 3.18E-8 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS24245 6d3a50a15a34f501c0c0a2a14a7bf341 319 Pfam PF12833 Helix-turn-helix domain 233 314 2.2E-21 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS24245 6d3a50a15a34f501c0c0a2a14a7bf341 319 PANTHER PTHR11019 47 314 8.6E-36 T 22-04-2016 PP4_RS24245 6d3a50a15a34f501c0c0a2a14a7bf341 319 Pfam PF14525 AraC-binding-like domain 25 187 5.6E-17 T 22-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PP4_RS24245 6d3a50a15a34f501c0c0a2a14a7bf341 319 Gene3D G3DSA:1.10.10.60 264 312 1.1E-5 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS21395 72ca9aadf9e28087c22196155d44bb34 178 Gene3D G3DSA:2.40.30.60 3 98 2.3E-32 T 22-04-2016 IPR002676 RimM protein GO:0006364 PP4_RS21395 72ca9aadf9e28087c22196155d44bb34 178 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 11 177 2.0E-54 T 22-04-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 PP4_RS21395 72ca9aadf9e28087c22196155d44bb34 178 PANTHER PTHR33692:SF1 9 178 2.5E-53 T 22-04-2016 PP4_RS21395 72ca9aadf9e28087c22196155d44bb34 178 SUPERFAMILY SSF50447 10 97 3.3E-24 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain PP4_RS21395 72ca9aadf9e28087c22196155d44bb34 178 Pfam PF05239 PRC-barrel domain 102 173 4.6E-7 T 22-04-2016 IPR027275 PRC-barrel domain PP4_RS21395 72ca9aadf9e28087c22196155d44bb34 178 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 11 178 24.646 T 22-04-2016 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 PP4_RS21395 72ca9aadf9e28087c22196155d44bb34 178 PANTHER PTHR33692 9 178 2.5E-53 T 22-04-2016 PP4_RS21395 72ca9aadf9e28087c22196155d44bb34 178 Pfam PF01782 RimM N-terminal domain 13 94 2.4E-26 T 22-04-2016 IPR002676 RimM protein GO:0006364 PP4_RS21395 72ca9aadf9e28087c22196155d44bb34 178 Gene3D G3DSA:2.30.30.240 104 178 8.1E-30 T 22-04-2016 PP4_RS21395 72ca9aadf9e28087c22196155d44bb34 178 SUPERFAMILY SSF50346 104 178 5.1E-21 T 22-04-2016 IPR011033 PRC-barrel-like PP4_RS22440 c1be6c4756cbf0331529f7ddb100e860 344 Pfam PF02769 AIR synthase related protein, C-terminal domain 169 343 1.5E-27 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain PP4_RS22440 c1be6c4756cbf0331529f7ddb100e860 344 Hamap MF_00625 Selenide, water dikinase [selD]. 4 344 45.422 T 22-04-2016 IPR023061 Selenophosphate synthetase, class I GO:0004756|GO:0005524|GO:0016260 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 PP4_RS22440 c1be6c4756cbf0331529f7ddb100e860 344 PANTHER PTHR10256 1 335 4.7E-149 T 22-04-2016 PP4_RS22440 c1be6c4756cbf0331529f7ddb100e860 344 SUPERFAMILY SSF55326 6 159 1.83E-39 T 22-04-2016 PP4_RS22440 c1be6c4756cbf0331529f7ddb100e860 344 PIRSF PIRSF036407 1 344 6.6E-115 T 22-04-2016 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 PP4_RS22440 c1be6c4756cbf0331529f7ddb100e860 344 Gene3D G3DSA:3.30.1330.10 39 161 1.4E-31 T 22-04-2016 IPR016188 PurM-like, N-terminal domain PP4_RS22440 c1be6c4756cbf0331529f7ddb100e860 344 TIGRFAM TIGR00476 selD: selenide, water dikinase 6 311 1.0E-134 T 22-04-2016 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 PP4_RS22440 c1be6c4756cbf0331529f7ddb100e860 344 Gene3D G3DSA:3.90.650.10 175 342 7.6E-15 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain PP4_RS22440 c1be6c4756cbf0331529f7ddb100e860 344 SUPERFAMILY SSF56042 163 339 7.33E-49 T 22-04-2016 IPR010918 AIR synthase-related protein, C-terminal domain PP4_RS22440 c1be6c4756cbf0331529f7ddb100e860 344 Pfam PF00586 AIR synthase related protein, N-terminal domain 49 156 3.6E-20 T 22-04-2016 IPR016188 PurM-like, N-terminal domain PP4_RS11970 dcf75955c62d1c656a7593222fe2391f 318 PANTHER PTHR30201 23 313 5.6E-80 T 22-04-2016 PP4_RS11970 dcf75955c62d1c656a7593222fe2391f 318 TIGRFAM TIGR03132 malonate_mdcB: triphosphoribosyl-dephospho-CoA synthase MdcB 51 314 3.8E-100 T 22-04-2016 IPR017555 Triphosphoribosyl-dephospho-CoA synthase GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 PP4_RS11970 dcf75955c62d1c656a7593222fe2391f 318 Hamap MF_01883 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase [mdcB]. 1 318 151.128 T 22-04-2016 IPR017555 Triphosphoribosyl-dephospho-CoA synthase GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 PP4_RS11970 dcf75955c62d1c656a7593222fe2391f 318 Pfam PF01874 ATP:dephospho-CoA triphosphoribosyl transferase 54 313 1.0E-74 T 22-04-2016 IPR002736 Triphosphoribosyl-dephospho-CoA protein GO:0005524|GO:0016310|GO:0046917 MetaCyc: PWY-5796 PP4_RS11665 f0fdeddbb7bb9d726a6eb9790397ea60 350 Gene3D G3DSA:3.30.1780.10 4 138 1.5E-37 T 22-04-2016 IPR023401 Ornithine cyclodeaminase, N-terminal PP4_RS11665 f0fdeddbb7bb9d726a6eb9790397ea60 350 Gene3D G3DSA:3.40.50.720 139 295 5.9E-55 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS11665 f0fdeddbb7bb9d726a6eb9790397ea60 350 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 11 314 3.6E-100 T 22-04-2016 IPR003462 Ornithine cyclodeaminase/mu-crystallin PP4_RS11665 f0fdeddbb7bb9d726a6eb9790397ea60 350 PANTHER PTHR13812 53 325 2.0E-48 T 22-04-2016 PP4_RS11665 f0fdeddbb7bb9d726a6eb9790397ea60 350 PIRSF PIRSF001439 1 323 4.1E-54 T 22-04-2016 IPR003462 Ornithine cyclodeaminase/mu-crystallin PP4_RS11665 f0fdeddbb7bb9d726a6eb9790397ea60 350 SUPERFAMILY SSF51735 2 338 1.97E-101 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS11665 f0fdeddbb7bb9d726a6eb9790397ea60 350 PANTHER PTHR13812:SF19 53 325 2.0E-48 T 22-04-2016 PP4_RS11330 b4d57903aff9565993af87f77a71a120 236 SUPERFAMILY SSF161098 21 222 4.71E-37 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS11330 b4d57903aff9565993af87f77a71a120 236 Gene3D G3DSA:1.10.3720.10 20 231 1.9E-42 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS11330 b4d57903aff9565993af87f77a71a120 236 PANTHER PTHR30614 1 236 2.9E-65 T 22-04-2016 PP4_RS11330 b4d57903aff9565993af87f77a71a120 236 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 41 231 3.1E-19 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS11330 b4d57903aff9565993af87f77a71a120 236 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 21 127 4.3E-21 T 22-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PP4_RS09875 17f432391a036e66c037a5dd53d2deba 429 PANTHER PTHR11662:SF267 1 416 1.3E-198 T 22-04-2016 PP4_RS09875 17f432391a036e66c037a5dd53d2deba 429 Pfam PF07690 Major Facilitator Superfamily 12 363 1.6E-38 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS09875 17f432391a036e66c037a5dd53d2deba 429 Gene3D G3DSA:1.20.1250.20 234 425 2.0E-21 T 22-04-2016 PP4_RS09875 17f432391a036e66c037a5dd53d2deba 429 PANTHER PTHR11662 1 416 1.3E-198 T 22-04-2016 PP4_RS09875 17f432391a036e66c037a5dd53d2deba 429 SUPERFAMILY SSF103473 2 415 1.83E-74 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS09875 17f432391a036e66c037a5dd53d2deba 429 Gene3D G3DSA:1.20.1250.20 4 204 3.0E-38 T 22-04-2016 PP4_RS16400 bc9674fcd03e34df6d8b1e91919500aa 266 Pfam PF00005 ABC transporter 17 171 2.1E-30 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS16400 bc9674fcd03e34df6d8b1e91919500aa 266 PANTHER PTHR24220 3 239 8.2E-97 T 22-04-2016 PP4_RS16400 bc9674fcd03e34df6d8b1e91919500aa 266 SUPERFAMILY SSF52540 2 231 1.77E-59 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS16400 bc9674fcd03e34df6d8b1e91919500aa 266 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS16400 bc9674fcd03e34df6d8b1e91919500aa 266 SMART SM00382 26 220 4.0E-12 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS16400 bc9674fcd03e34df6d8b1e91919500aa 266 TIGRFAM TIGR02315 ABC_phnC: phosphonate ABC transporter, ATP-binding protein 1 240 8.0E-94 T 22-04-2016 IPR012693 ABC transporter, phosphonate import, PhnC GO:0005524|GO:0015416|GO:0015716|GO:0016020 PP4_RS16400 bc9674fcd03e34df6d8b1e91919500aa 266 Gene3D G3DSA:3.40.50.300 1 233 1.8E-66 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS16400 bc9674fcd03e34df6d8b1e91919500aa 266 PANTHER PTHR24220:SF408 3 239 8.2E-97 T 22-04-2016 PP4_RS16400 bc9674fcd03e34df6d8b1e91919500aa 266 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 30 43 - T 22-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 PP4_RS03650 64dae0081f5681ce01bf7ea8dc565fff 456 Gene3D G3DSA:3.30.230.10 284 456 1.1E-36 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PP4_RS03650 64dae0081f5681ce01bf7ea8dc565fff 456 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 451 1.4E-199 T 22-04-2016 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 PP4_RS03650 64dae0081f5681ce01bf7ea8dc565fff 456 Pfam PF13481 AAA domain 70 222 6.7E-13 T 22-04-2016 PP4_RS03650 64dae0081f5681ce01bf7ea8dc565fff 456 Gene3D G3DSA:3.40.50.300 58 277 5.0E-53 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03650 64dae0081f5681ce01bf7ea8dc565fff 456 SUPERFAMILY SSF54211 303 455 1.02E-40 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PP4_RS03650 64dae0081f5681ce01bf7ea8dc565fff 456 SUPERFAMILY SSF54211 255 269 1.02E-40 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PP4_RS03650 64dae0081f5681ce01bf7ea8dc565fff 456 PANTHER PTHR32472 1 456 6.9E-213 T 22-04-2016 PP4_RS03650 64dae0081f5681ce01bf7ea8dc565fff 456 SUPERFAMILY SSF52540 69 291 2.3E-48 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03650 64dae0081f5681ce01bf7ea8dc565fff 456 Pfam PF13541 Subunit ChlI of Mg-chelatase 364 430 2.1E-7 T 22-04-2016 PP4_RS03650 64dae0081f5681ce01bf7ea8dc565fff 456 SMART SM00382 91 244 1.8E-9 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS03650 64dae0081f5681ce01bf7ea8dc565fff 456 PRINTS PR01874 DNA repair protein radA signature 124 141 1.3E-93 T 22-04-2016 PP4_RS03650 64dae0081f5681ce01bf7ea8dc565fff 456 PRINTS PR01874 DNA repair protein radA signature 248 274 1.3E-93 T 22-04-2016 PP4_RS03650 64dae0081f5681ce01bf7ea8dc565fff 456 PRINTS PR01874 DNA repair protein radA signature 174 198 1.3E-93 T 22-04-2016 PP4_RS03650 64dae0081f5681ce01bf7ea8dc565fff 456 PRINTS PR01874 DNA repair protein radA signature 83 111 1.3E-93 T 22-04-2016 PP4_RS03650 64dae0081f5681ce01bf7ea8dc565fff 456 PRINTS PR01874 DNA repair protein radA signature 10 34 1.3E-93 T 22-04-2016 PP4_RS03650 64dae0081f5681ce01bf7ea8dc565fff 456 PRINTS PR01874 DNA repair protein radA signature 322 345 1.3E-93 T 22-04-2016 PP4_RS03650 64dae0081f5681ce01bf7ea8dc565fff 456 PRINTS PR01874 DNA repair protein radA signature 213 241 1.3E-93 T 22-04-2016 PP4_RS01195 58bf66ac0a68a8ea846fb6bffc601229 419 SMART SM00448 9 121 9.8E-15 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS01195 58bf66ac0a68a8ea846fb6bffc601229 419 SUPERFAMILY SSF52172 7 125 3.13E-24 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS01195 58bf66ac0a68a8ea846fb6bffc601229 419 PANTHER PTHR26402 9 125 1.4E-22 T 22-04-2016 PP4_RS01195 58bf66ac0a68a8ea846fb6bffc601229 419 Gene3D G3DSA:3.40.50.2300 9 125 2.4E-23 T 22-04-2016 PP4_RS01195 58bf66ac0a68a8ea846fb6bffc601229 419 Pfam PF00072 Response regulator receiver domain 11 121 2.9E-15 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS01195 58bf66ac0a68a8ea846fb6bffc601229 419 Pfam PF08668 HDOD domain 160 345 7.6E-40 T 22-04-2016 IPR013976 Metal-dependent hydrolase HDOD PP4_RS01195 58bf66ac0a68a8ea846fb6bffc601229 419 SUPERFAMILY SSF109604 148 370 1.18E-34 T 22-04-2016 PP4_RS01195 58bf66ac0a68a8ea846fb6bffc601229 419 Gene3D G3DSA:1.10.3150.10 150 389 1.3E-29 T 22-04-2016 IPR013976 Metal-dependent hydrolase HDOD PP4_RS19240 89fe47e04cc4807f23a5be359fae03d2 346 Gene3D G3DSA:1.10.10.60 292 343 4.0E-15 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS19240 89fe47e04cc4807f23a5be359fae03d2 346 SMART SM00342 257 339 5.7E-24 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS19240 89fe47e04cc4807f23a5be359fae03d2 346 SUPERFAMILY SSF46689 293 342 4.48E-12 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS19240 89fe47e04cc4807f23a5be359fae03d2 346 PANTHER PTHR11019:SF52 191 346 4.3E-38 T 22-04-2016 PP4_RS19240 89fe47e04cc4807f23a5be359fae03d2 346 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 323 339 3.2E-5 T 22-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PP4_RS19240 89fe47e04cc4807f23a5be359fae03d2 346 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 308 323 3.2E-5 T 22-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PP4_RS19240 89fe47e04cc4807f23a5be359fae03d2 346 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 27 210 3.8E-39 T 22-04-2016 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal PP4_RS19240 89fe47e04cc4807f23a5be359fae03d2 346 Pfam PF12833 Helix-turn-helix domain 264 340 2.5E-14 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS19240 89fe47e04cc4807f23a5be359fae03d2 346 PANTHER PTHR11019 191 346 4.3E-38 T 22-04-2016 PP4_RS17345 b316f8c28616b8c8a34deb747e794f8b 637 SUPERFAMILY SSF52799 30 272 1.98E-48 T 22-04-2016 IPR029021 Protein-tyrosine phosphatase-like PP4_RS17345 b316f8c28616b8c8a34deb747e794f8b 637 Pfam PF13350 Tyrosine phosphatase family 29 273 3.3E-61 T 22-04-2016 IPR026893 Tyrosine/serine-protein phosphatase IphP-type PP4_RS17345 b316f8c28616b8c8a34deb747e794f8b 637 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 307 637 1.8E-9 T 22-04-2016 IPR006315 Outer membrane autotransporter barrel GO:0019867 PP4_RS17345 b316f8c28616b8c8a34deb747e794f8b 637 PANTHER PTHR31126 28 110 6.9E-47 T 22-04-2016 PP4_RS17345 b316f8c28616b8c8a34deb747e794f8b 637 PANTHER PTHR31126:SF21 137 297 6.9E-47 T 22-04-2016 PP4_RS17345 b316f8c28616b8c8a34deb747e794f8b 637 PANTHER PTHR31126:SF21 28 110 6.9E-47 T 22-04-2016 PP4_RS17345 b316f8c28616b8c8a34deb747e794f8b 637 SMART SM00869 366 627 5.9E-27 T 22-04-2016 IPR005546 Autotransporter beta-domain PP4_RS17345 b316f8c28616b8c8a34deb747e794f8b 637 Pfam PF03797 Autotransporter beta-domain 367 621 9.8E-28 T 22-04-2016 IPR005546 Autotransporter beta-domain PP4_RS17345 b316f8c28616b8c8a34deb747e794f8b 637 PANTHER PTHR31126 137 297 6.9E-47 T 22-04-2016 PP4_RS17345 b316f8c28616b8c8a34deb747e794f8b 637 ProSitePatterns PS00383 Tyrosine specific protein phosphatases active site. 168 178 - T 22-04-2016 IPR016130 Protein-tyrosine phosphatase, active site GO:0004725|GO:0016311|GO:0016791 PP4_RS17345 b316f8c28616b8c8a34deb747e794f8b 637 Gene3D G3DSA:2.40.128.130 329 637 1.2E-31 T 22-04-2016 IPR005546 Autotransporter beta-domain PP4_RS17345 b316f8c28616b8c8a34deb747e794f8b 637 Gene3D G3DSA:3.90.190.10 32 203 1.2E-16 T 22-04-2016 IPR029021 Protein-tyrosine phosphatase-like PP4_RS17345 b316f8c28616b8c8a34deb747e794f8b 637 SUPERFAMILY SSF103515 332 637 3.27E-44 T 22-04-2016 IPR005546 Autotransporter beta-domain PP4_RS13905 e403d038a5f7edc4e4045a9807de1269 279 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 40 272 1.3E-43 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS13905 e403d038a5f7edc4e4045a9807de1269 279 SMART SM00062 38 274 3.2E-24 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS13905 e403d038a5f7edc4e4045a9807de1269 279 Gene3D G3DSA:3.40.190.10 125 220 1.1E-12 T 22-04-2016 PP4_RS13905 e403d038a5f7edc4e4045a9807de1269 279 SUPERFAMILY SSF53850 10 274 5.43E-48 T 22-04-2016 PP4_RS13905 e403d038a5f7edc4e4045a9807de1269 279 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 61 74 - T 22-04-2016 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 PP4_RS13905 e403d038a5f7edc4e4045a9807de1269 279 PANTHER PTHR18966:SF191 34 272 2.4E-25 T 22-04-2016 PP4_RS13905 e403d038a5f7edc4e4045a9807de1269 279 PANTHER PTHR18966 34 272 2.4E-25 T 22-04-2016 PP4_RS13905 e403d038a5f7edc4e4045a9807de1269 279 Gene3D G3DSA:3.40.190.10 35 124 1.5E-30 T 22-04-2016 PP4_RS13905 e403d038a5f7edc4e4045a9807de1269 279 Gene3D G3DSA:3.40.190.10 233 276 1.5E-30 T 22-04-2016 PP4_RS17850 8ff70f1508560be9eb82a3c93593d3eb 105 PIRSF PIRSF039032 1 104 6.6E-30 T 22-04-2016 IPR009387 Toxin HigB-2 PP4_RS01185 02ccb3fa04e5389526c0b9d570cf08cd 480 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 254 261 - T 22-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 PP4_RS01185 02ccb3fa04e5389526c0b9d570cf08cd 480 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 282 293 - T 22-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 PP4_RS01185 02ccb3fa04e5389526c0b9d570cf08cd 480 PANTHER PTHR11699:SF49 1 479 4.3E-302 T 22-04-2016 PP4_RS01185 02ccb3fa04e5389526c0b9d570cf08cd 480 Gene3D G3DSA:3.40.605.10 10 267 7.1E-107 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS01185 02ccb3fa04e5389526c0b9d570cf08cd 480 Gene3D G3DSA:3.40.309.10 268 451 4.8E-68 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PP4_RS01185 02ccb3fa04e5389526c0b9d570cf08cd 480 SUPERFAMILY SSF53720 6 479 1.96E-176 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS01185 02ccb3fa04e5389526c0b9d570cf08cd 480 PANTHER PTHR11699 1 479 4.3E-302 T 22-04-2016 PP4_RS01185 02ccb3fa04e5389526c0b9d570cf08cd 480 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 30 474 5.3E-232 T 22-04-2016 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 UniPathway: UPA00733 PP4_RS01185 02ccb3fa04e5389526c0b9d570cf08cd 480 Pfam PF00171 Aldehyde dehydrogenase family 19 475 2.1E-173 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PP4_RS11445 8aad2489722d760b04b5780e23913973 246 Gene3D G3DSA:3.40.50.720 3 243 6.3E-77 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS11445 8aad2489722d760b04b5780e23913973 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 4.2E-15 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS11445 8aad2489722d760b04b5780e23913973 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 4.2E-15 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS11445 8aad2489722d760b04b5780e23913973 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 4.2E-15 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS11445 8aad2489722d760b04b5780e23913973 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 6.0E-42 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS11445 8aad2489722d760b04b5780e23913973 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 6.0E-42 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS11445 8aad2489722d760b04b5780e23913973 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 6.0E-42 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS11445 8aad2489722d760b04b5780e23913973 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 6.0E-42 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS11445 8aad2489722d760b04b5780e23913973 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 6.0E-42 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS11445 8aad2489722d760b04b5780e23913973 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 227 6.0E-42 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS11445 8aad2489722d760b04b5780e23913973 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PP4_RS11445 8aad2489722d760b04b5780e23913973 246 SUPERFAMILY SSF51735 2 243 4.31E-73 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS11445 8aad2489722d760b04b5780e23913973 246 PANTHER PTHR24322 153 184 1.4E-47 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS11445 8aad2489722d760b04b5780e23913973 246 PANTHER PTHR24322 12 137 1.4E-47 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS11445 8aad2489722d760b04b5780e23913973 246 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 242 8.5E-56 T 22-04-2016 PP4_RS20050 f52d5d055f783c4bdc06212518298527 298 SUPERFAMILY SSF51735 1 295 3.05E-98 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS20050 f52d5d055f783c4bdc06212518298527 298 TIGRFAM TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase 2 294 1.2E-99 T 22-04-2016 IPR005913 dTDP-4-dehydrorhamnose reductase family PP4_RS20050 f52d5d055f783c4bdc06212518298527 298 Gene3D G3DSA:3.90.25.10 221 285 1.7E-28 T 22-04-2016 PP4_RS20050 f52d5d055f783c4bdc06212518298527 298 Gene3D G3DSA:3.90.25.10 173 184 1.7E-28 T 22-04-2016 PP4_RS20050 f52d5d055f783c4bdc06212518298527 298 Gene3D G3DSA:3.40.50.720 1 172 8.5E-29 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS20050 f52d5d055f783c4bdc06212518298527 298 Pfam PF04321 RmlD substrate binding domain 1 295 3.4E-108 T 22-04-2016 IPR029903 RmlD-like substrate binding domain PP4_RS20050 f52d5d055f783c4bdc06212518298527 298 PANTHER PTHR10491:SF4 1 298 3.3E-87 T 22-04-2016 PP4_RS20050 f52d5d055f783c4bdc06212518298527 298 PANTHER PTHR10491 1 298 3.3E-87 T 22-04-2016 IPR005913 dTDP-4-dehydrorhamnose reductase family PP4_RS13595 bf486ed890d549b9ba2aa937a1262f90 301 SUPERFAMILY SSF54593 1 123 7.66E-21 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PP4_RS13595 bf486ed890d549b9ba2aa937a1262f90 301 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 143 264 1.9E-16 T 22-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain PP4_RS13595 bf486ed890d549b9ba2aa937a1262f90 301 Gene3D G3DSA:3.10.180.10 134 296 5.0E-52 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PP4_RS13595 bf486ed890d549b9ba2aa937a1262f90 301 Gene3D G3DSA:3.10.180.10 2 131 3.7E-28 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PP4_RS13595 bf486ed890d549b9ba2aa937a1262f90 301 SUPERFAMILY SSF54593 135 289 1.37E-31 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PP4_RS13595 bf486ed890d549b9ba2aa937a1262f90 301 ProSitePatterns PS00082 Extradiol ring-cleavage dioxygenases signature. 242 263 - T 22-04-2016 IPR000486 Extradiol ring-cleavage dioxygenase, class I /II GO:0003824|GO:0006725|GO:0008198|GO:0055114 PP4_RS06915 2df6578f03e9b4772d0c4bd92de48cc6 197 Hamap MF_00836 Ribose 1,5-bisphosphate phosphokinase PhnN [phnN]. 12 189 34.74 T 22-04-2016 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN GO:0006015|GO:0033863 KEGG: 00030+2.7.4.23|MetaCyc: PWY-5532|UniPathway: UPA00087 PP4_RS06915 2df6578f03e9b4772d0c4bd92de48cc6 197 TIGRFAM TIGR02322 phosphon_PhnN: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN 13 190 5.0E-67 T 22-04-2016 IPR012699 Ribose 1,5-bisphosphate phosphokinase PhnN GO:0006015|GO:0033863 KEGG: 00030+2.7.4.23|MetaCyc: PWY-5532|UniPathway: UPA00087 PP4_RS06915 2df6578f03e9b4772d0c4bd92de48cc6 197 Gene3D G3DSA:3.40.50.300 14 188 1.3E-14 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS06915 2df6578f03e9b4772d0c4bd92de48cc6 197 PANTHER PTHR23117 11 191 1.6E-62 T 22-04-2016 PP4_RS06915 2df6578f03e9b4772d0c4bd92de48cc6 197 SUPERFAMILY SSF52540 11 191 1.46E-39 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS06915 2df6578f03e9b4772d0c4bd92de48cc6 197 PANTHER PTHR23117:SF8 11 191 1.6E-62 T 22-04-2016 PP4_RS06915 2df6578f03e9b4772d0c4bd92de48cc6 197 Pfam PF00625 Guanylate kinase 14 184 3.5E-7 T 22-04-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit PP4_RS06915 2df6578f03e9b4772d0c4bd92de48cc6 197 SMART SM00072 12 189 1.7E-5 T 22-04-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit PP4_RS06905 a4a8a8769f8c8960e507ce2a9f989457 480 SUPERFAMILY SSF161093 308 479 1.83E-49 T 22-04-2016 PP4_RS06905 a4a8a8769f8c8960e507ce2a9f989457 480 TIGRFAM TIGR00400 mgtE: magnesium transporter 46 479 1.9E-86 T 22-04-2016 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 PP4_RS06905 a4a8a8769f8c8960e507ce2a9f989457 480 SUPERFAMILY SSF54631 167 305 5.66E-29 T 22-04-2016 PP4_RS06905 a4a8a8769f8c8960e507ce2a9f989457 480 Pfam PF00571 CBS domain 231 285 2.0E-7 T 22-04-2016 IPR000644 CBS domain PP4_RS06905 a4a8a8769f8c8960e507ce2a9f989457 480 Pfam PF00571 CBS domain 167 223 2.4E-4 T 22-04-2016 IPR000644 CBS domain PP4_RS06905 a4a8a8769f8c8960e507ce2a9f989457 480 PANTHER PTHR11911:SF99 1 460 6.3E-42 T 22-04-2016 PP4_RS06905 a4a8a8769f8c8960e507ce2a9f989457 480 Pfam PF03448 MgtE intracellular N domain 64 165 7.4E-26 T 22-04-2016 IPR006668 Magnesium transporter, MgtE intracellular domain PP4_RS06905 a4a8a8769f8c8960e507ce2a9f989457 480 Gene3D G3DSA:3.10.580.10 158 290 5.2E-18 T 22-04-2016 PP4_RS06905 a4a8a8769f8c8960e507ce2a9f989457 480 SMART SM00116 174 227 4.2 T 22-04-2016 IPR000644 CBS domain PP4_RS06905 a4a8a8769f8c8960e507ce2a9f989457 480 SMART SM00116 238 286 2.0E-4 T 22-04-2016 IPR000644 CBS domain PP4_RS06905 a4a8a8769f8c8960e507ce2a9f989457 480 Gene3D G3DSA:1.25.60.10 43 157 3.0E-25 T 22-04-2016 PP4_RS06905 a4a8a8769f8c8960e507ce2a9f989457 480 SUPERFAMILY SSF158791 43 164 2.22E-28 T 22-04-2016 PP4_RS06905 a4a8a8769f8c8960e507ce2a9f989457 480 PANTHER PTHR11911 1 460 6.3E-42 T 22-04-2016 PP4_RS06905 a4a8a8769f8c8960e507ce2a9f989457 480 SMART SM00924 64 167 3.9E-35 T 22-04-2016 IPR006668 Magnesium transporter, MgtE intracellular domain PP4_RS06905 a4a8a8769f8c8960e507ce2a9f989457 480 Pfam PF01769 Divalent cation transporter 351 473 5.6E-25 T 22-04-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 PP4_RS06905 a4a8a8769f8c8960e507ce2a9f989457 480 Gene3D G3DSA:1.10.357.20 307 479 6.5E-56 T 22-04-2016 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 PP4_RS24890 5f50fee1110e93d16a89f8728920e463 275 Hamap MF_00193 NH(3)-dependent NAD(+) synthetase [nadE]. 19 275 31.612 T 22-04-2016 IPR022926 NH(3)-dependent NAD(+) synthetase GO:0008795|GO:0009435 KEGG: 00760+6.3.1.5|UniPathway: UPA00253 PP4_RS24890 5f50fee1110e93d16a89f8728920e463 275 PANTHER PTHR23090 1 275 2.5E-128 T 22-04-2016 PP4_RS24890 5f50fee1110e93d16a89f8728920e463 275 TIGRFAM TIGR00552 nadE: NAD+ synthetase 33 272 1.1E-65 T 22-04-2016 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|UniPathway: UPA00253 PP4_RS24890 5f50fee1110e93d16a89f8728920e463 275 PANTHER PTHR23090:SF7 1 275 2.5E-128 T 22-04-2016 PP4_RS24890 5f50fee1110e93d16a89f8728920e463 275 SUPERFAMILY SSF52402 24 273 2.33E-74 T 22-04-2016 PP4_RS24890 5f50fee1110e93d16a89f8728920e463 275 Pfam PF02540 NAD synthase 28 272 1.6E-63 T 22-04-2016 IPR022310 NAD/GMP synthase PP4_RS24890 5f50fee1110e93d16a89f8728920e463 275 Gene3D G3DSA:3.40.50.620 22 272 5.0E-68 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS09435 82fd52cf6244b328a7e2e7fcd642887d 100 SUPERFAMILY SSF141099 1 96 4.18E-37 T 22-04-2016 IPR015073 Atu1913-like PP4_RS09435 82fd52cf6244b328a7e2e7fcd642887d 100 Pfam PF08980 Domain of unknown function (DUF1883) 1 75 3.9E-31 T 22-04-2016 IPR015073 Atu1913-like PP4_RS09435 82fd52cf6244b328a7e2e7fcd642887d 100 Gene3D G3DSA:4.10.1210.10 1 92 2.7E-36 T 22-04-2016 IPR015073 Atu1913-like PP4_RS06625 83bd1099adaa05a2d30105b191c11720 297 Gene3D G3DSA:1.10.10.10 7 92 2.1E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS06625 83bd1099adaa05a2d30105b191c11720 297 Gene3D G3DSA:3.40.190.10 93 197 6.7E-19 T 22-04-2016 PP4_RS06625 83bd1099adaa05a2d30105b191c11720 297 SUPERFAMILY SSF46785 7 92 6.96E-17 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS06625 83bd1099adaa05a2d30105b191c11720 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 9.9E-14 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS06625 83bd1099adaa05a2d30105b191c11720 297 PANTHER PTHR30126:SF16 6 290 8.2E-146 T 22-04-2016 PP4_RS06625 83bd1099adaa05a2d30105b191c11720 297 SUPERFAMILY SSF53850 93 294 4.71E-35 T 22-04-2016 PP4_RS06625 83bd1099adaa05a2d30105b191c11720 297 Pfam PF03466 LysR substrate binding domain 92 294 2.2E-36 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS06625 83bd1099adaa05a2d30105b191c11720 297 PANTHER PTHR30126 6 290 8.2E-146 T 22-04-2016 PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 PANTHER PTHR11405 1 1069 0.0 T 22-04-2016 PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 SUPERFAMILY SSF52335 938 1069 3.92E-42 T 22-04-2016 IPR011607 Methylglyoxal synthase-like domain PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 Gene3D G3DSA:3.40.50.20 539 662 6.0E-62 T 22-04-2016 IPR016185 Pre-ATP-grasp domain PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 Gene3D G3DSA:1.10.1030.10 400 538 6.2E-49 T 22-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 297 326 2.3E-66 T 22-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 48 58 2.3E-66 T 22-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 168 180 2.3E-66 T 22-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 239 256 2.3E-66 T 22-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 204 223 2.3E-66 T 22-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 380 398 2.3E-66 T 22-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature 19 33 2.3E-66 T 22-04-2016 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 TIGRFAM TIGR01369 CPSaseII_lrg: carbamoyl-phosphate synthase, large subunit 2 1053 0.0 T 22-04-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 128 334 1.4E-72 T 22-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 673 875 8.2E-33 T 22-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 Gene3D G3DSA:3.30.470.20 200 399 1.6E-75 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 Gene3D G3DSA:3.30.470.20 745 934 2.1E-77 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 SUPERFAMILY SSF48108 396 554 8.37E-51 T 22-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB]. 5 1067 13.407 T 22-04-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 PANTHER PTHR11405:SF5 1 1069 0.0 T 22-04-2016 PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 Gene3D G3DSA:3.30.1490.20 141 199 7.5E-27 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB]. 1 1062 13.067 T 22-04-2016 IPR006275 Carbamoyl-phosphate synthase, large subunit GO:0006807 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 SUPERFAMILY SSF56059 128 401 7.25E-110 T 22-04-2016 PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 SMART SM01096 424 547 5.6E-71 T 22-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 709 723 - T 22-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 164 178 - T 22-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 Gene3D G3DSA:3.40.50.1380 938 1070 1.1E-43 T 22-04-2016 IPR011607 Methylglyoxal synthase-like domain PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 SUPERFAMILY SSF56059 673 933 2.83E-103 T 22-04-2016 PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 SUPERFAMILY SSF52440 558 675 1.08E-49 T 22-04-2016 IPR016185 Pre-ATP-grasp domain PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 838 845 - T 22-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 297 304 - T 22-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 SUPERFAMILY SSF52440 1 127 1.12E-49 T 22-04-2016 IPR016185 Pre-ATP-grasp domain PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain 427 547 6.2E-39 T 22-04-2016 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 Gene3D G3DSA:3.30.1490.20 688 744 3.7E-25 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 SMART SM00851 955 1041 1.2E-33 T 22-04-2016 IPR011607 Methylglyoxal synthase-like domain PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 Gene3D G3DSA:3.40.50.20 3 108 8.5E-45 T 22-04-2016 IPR016185 Pre-ATP-grasp domain PP4_RS23735 df8dcaff44f49ce5a48e9107e759d587 1073 Pfam PF02142 MGS-like domain 958 1041 8.1E-20 T 22-04-2016 IPR011607 Methylglyoxal synthase-like domain PP4_RS07080 16274eec7a76f9f0addbc1deaaf0fe30 480 Pfam PF00669 Bacterial flagellin N-terminal helical region 5 141 1.0E-39 T 22-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 PP4_RS07080 16274eec7a76f9f0addbc1deaaf0fe30 480 PRINTS PR00207 Flagellin signature 111 134 9.1E-21 T 22-04-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 PP4_RS07080 16274eec7a76f9f0addbc1deaaf0fe30 480 PRINTS PR00207 Flagellin signature 76 95 9.1E-21 T 22-04-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 PP4_RS07080 16274eec7a76f9f0addbc1deaaf0fe30 480 PRINTS PR00207 Flagellin signature 37 54 9.1E-21 T 22-04-2016 IPR001492 Flagellin GO:0005198|GO:0009420|GO:0071973 PP4_RS07080 16274eec7a76f9f0addbc1deaaf0fe30 480 Pfam PF00700 Bacterial flagellin C-terminal helical region 395 479 3.7E-25 T 22-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 PP4_RS07080 16274eec7a76f9f0addbc1deaaf0fe30 480 PANTHER PTHR30244 290 363 2.1E-115 T 22-04-2016 PP4_RS07080 16274eec7a76f9f0addbc1deaaf0fe30 480 PANTHER PTHR30244 390 480 2.1E-115 T 22-04-2016 PP4_RS07080 16274eec7a76f9f0addbc1deaaf0fe30 480 PANTHER PTHR30244 2 181 2.1E-115 T 22-04-2016 PP4_RS07080 16274eec7a76f9f0addbc1deaaf0fe30 480 PANTHER PTHR30244:SF1 290 363 2.1E-115 T 22-04-2016 PP4_RS07080 16274eec7a76f9f0addbc1deaaf0fe30 480 PANTHER PTHR30244:SF1 390 480 2.1E-115 T 22-04-2016 PP4_RS07080 16274eec7a76f9f0addbc1deaaf0fe30 480 PANTHER PTHR30244:SF1 2 181 2.1E-115 T 22-04-2016 PP4_RS07080 16274eec7a76f9f0addbc1deaaf0fe30 480 Gene3D G3DSA:1.20.1330.10 382 436 1.2E-51 T 22-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 PP4_RS07080 16274eec7a76f9f0addbc1deaaf0fe30 480 Gene3D G3DSA:1.20.1330.10 54 171 1.2E-51 T 22-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 PP4_RS07080 16274eec7a76f9f0addbc1deaaf0fe30 480 SUPERFAMILY SSF64518 1 480 1.12E-99 T 22-04-2016 PP4_RS07080 16274eec7a76f9f0addbc1deaaf0fe30 480 Pfam PF07196 Flagellin hook IN motif 190 239 8.2E-8 T 22-04-2016 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 PP4_RS21485 c831f5ffb96a83045dd8c95ea47f8648 145 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 26 5.8E-8 T 22-04-2016 IPR012902 Prokaryotic N-terminal methylation site PP4_RS21485 c831f5ffb96a83045dd8c95ea47f8648 145 TIGRFAM TIGR01708 typeII_sec_gspH: type II secretion system protein H 3 141 9.9E-47 T 22-04-2016 IPR002416 Type II secretion system protein H GO:0008565|GO:0015627|GO:0015628 PP4_RS21485 c831f5ffb96a83045dd8c95ea47f8648 145 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 2 25 1.9E-7 T 22-04-2016 IPR012902 Prokaryotic N-terminal methylation site PP4_RS21485 c831f5ffb96a83045dd8c95ea47f8648 145 SUPERFAMILY SSF54523 7 137 3.3E-13 T 22-04-2016 PP4_RS21485 c831f5ffb96a83045dd8c95ea47f8648 145 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 22-04-2016 IPR012902 Prokaryotic N-terminal methylation site PP4_RS06020 8c1de8ad435564980f528aa22d03dac9 252 PANTHER PTHR13754 1 252 1.9E-71 T 22-04-2016 PP4_RS06020 8c1de8ad435564980f528aa22d03dac9 252 Gene3D G3DSA:3.60.15.10 5 223 5.8E-34 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS06020 8c1de8ad435564980f528aa22d03dac9 252 Pfam PF12706 Beta-lactamase superfamily domain 24 211 1.1E-24 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS06020 8c1de8ad435564980f528aa22d03dac9 252 SUPERFAMILY SSF56281 6 225 5.11E-42 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS06020 8c1de8ad435564980f528aa22d03dac9 252 PANTHER PTHR13754:SF15 1 252 1.9E-71 T 22-04-2016 PP4_RS06020 8c1de8ad435564980f528aa22d03dac9 252 SMART SM00849 11 171 3.0E-13 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS19425 9a6cc3587edcd7624d6e3f9d10905f29 516 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 20 499 3.5E-118 T 22-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 PP4_RS19425 9a6cc3587edcd7624d6e3f9d10905f29 516 PANTHER PTHR23501 11 510 4.5E-277 T 22-04-2016 PP4_RS19425 9a6cc3587edcd7624d6e3f9d10905f29 516 SUPERFAMILY SSF103473 480 510 5.1E-61 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS19425 9a6cc3587edcd7624d6e3f9d10905f29 516 SUPERFAMILY SSF103473 257 428 5.1E-61 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS19425 9a6cc3587edcd7624d6e3f9d10905f29 516 SUPERFAMILY SSF103473 11 198 5.1E-61 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS19425 9a6cc3587edcd7624d6e3f9d10905f29 516 Pfam PF07690 Major Facilitator Superfamily 24 418 9.8E-44 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS19425 9a6cc3587edcd7624d6e3f9d10905f29 516 Gene3D G3DSA:1.20.1250.20 21 197 1.9E-22 T 22-04-2016 PP4_RS19425 9a6cc3587edcd7624d6e3f9d10905f29 516 Gene3D G3DSA:1.20.1250.20 273 429 2.5E-17 T 22-04-2016 PP4_RS19425 9a6cc3587edcd7624d6e3f9d10905f29 516 Gene3D G3DSA:1.20.1250.20 481 508 2.5E-17 T 22-04-2016 PP4_RS19425 9a6cc3587edcd7624d6e3f9d10905f29 516 PANTHER PTHR23501:SF51 11 510 4.5E-277 T 22-04-2016 PP4_RS21675 3ee16bdb10b224f59497d7a0d1731564 241 Pfam PF00486 Transcriptional regulatory protein, C terminal 157 233 3.0E-18 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS21675 3ee16bdb10b224f59497d7a0d1731564 241 SMART SM00862 157 233 5.1E-16 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS21675 3ee16bdb10b224f59497d7a0d1731564 241 Pfam PF00072 Response regulator receiver domain 8 120 2.3E-28 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS21675 3ee16bdb10b224f59497d7a0d1731564 241 SUPERFAMILY SSF46894 137 234 2.18E-22 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS21675 3ee16bdb10b224f59497d7a0d1731564 241 PANTHER PTHR26402:SF528 6 237 8.7E-133 T 22-04-2016 PP4_RS21675 3ee16bdb10b224f59497d7a0d1731564 241 Gene3D G3DSA:1.10.10.10 135 235 1.8E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS21675 3ee16bdb10b224f59497d7a0d1731564 241 PANTHER PTHR26402 6 237 8.7E-133 T 22-04-2016 PP4_RS21675 3ee16bdb10b224f59497d7a0d1731564 241 Gene3D G3DSA:3.40.50.2300 4 127 2.7E-43 T 22-04-2016 PP4_RS21675 3ee16bdb10b224f59497d7a0d1731564 241 SUPERFAMILY SSF52172 4 129 3.56E-43 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS21675 3ee16bdb10b224f59497d7a0d1731564 241 SMART SM00448 6 119 1.3E-43 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS18155 ecc1d52ce1b1eed14e2a70d1a1c8e187 275 SUPERFAMILY SSF56784 10 262 3.4E-54 T 22-04-2016 IPR023214 HAD-like domain PP4_RS18155 ecc1d52ce1b1eed14e2a70d1a1c8e187 275 Gene3D G3DSA:3.40.50.1000 8 27 3.9E-30 T 22-04-2016 IPR023214 HAD-like domain PP4_RS18155 ecc1d52ce1b1eed14e2a70d1a1c8e187 275 Gene3D G3DSA:3.40.50.1000 107 260 3.9E-30 T 22-04-2016 IPR023214 HAD-like domain PP4_RS18155 ecc1d52ce1b1eed14e2a70d1a1c8e187 275 PANTHER PTHR18901:SF45 1 273 9.6E-115 T 22-04-2016 PP4_RS18155 ecc1d52ce1b1eed14e2a70d1a1c8e187 275 Hamap MF_01375 Phosphonoacetaldehyde hydrolase [phnX]. 1 275 139.13 T 22-04-2016 IPR006323 Phosphonoacetaldehyde hydrolase GO:0019700|GO:0050194 KEGG: 00440+3.11.1.1 PP4_RS18155 ecc1d52ce1b1eed14e2a70d1a1c8e187 275 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 72 206 9.6E-12 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PP4_RS18155 ecc1d52ce1b1eed14e2a70d1a1c8e187 275 Gene3D G3DSA:1.10.150.240 28 102 8.6E-36 T 22-04-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 PP4_RS18155 ecc1d52ce1b1eed14e2a70d1a1c8e187 275 TIGRFAM TIGR01422 phosphonatase: phosphonoacetaldehyde hydrolase 8 260 2.7E-113 T 22-04-2016 IPR006323 Phosphonoacetaldehyde hydrolase GO:0019700|GO:0050194 KEGG: 00440+3.11.1.1 PP4_RS18155 ecc1d52ce1b1eed14e2a70d1a1c8e187 275 Pfam PF13419 Haloacid dehalogenase-like hydrolase 29 206 1.3E-5 T 22-04-2016 IPR023214 HAD-like domain PP4_RS18155 ecc1d52ce1b1eed14e2a70d1a1c8e187 275 PANTHER PTHR18901 1 273 9.6E-115 T 22-04-2016 PP4_RS26955 11793cdd1b5fa42b16af065600fa73ea 466 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 378 453 5.0E-14 T 22-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS26955 11793cdd1b5fa42b16af065600fa73ea 466 PANTHER PTHR22573:SF28 14 465 3.0E-204 T 22-04-2016 PP4_RS26955 11793cdd1b5fa42b16af065600fa73ea 466 SUPERFAMILY SSF53738 3 182 2.67E-38 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS26955 11793cdd1b5fa42b16af065600fa73ea 466 SUPERFAMILY SSF55957 372 465 9.24E-25 T 22-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS26955 11793cdd1b5fa42b16af065600fa73ea 466 SUPERFAMILY SSF53738 159 260 2.08E-34 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS26955 11793cdd1b5fa42b16af065600fa73ea 466 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 161 258 4.9E-30 T 22-04-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS26955 11793cdd1b5fa42b16af065600fa73ea 466 PANTHER PTHR22573 14 465 3.0E-204 T 22-04-2016 PP4_RS26955 11793cdd1b5fa42b16af065600fa73ea 466 SUPERFAMILY SSF53738 263 368 1.18E-33 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS26955 11793cdd1b5fa42b16af065600fa73ea 466 Gene3D G3DSA:3.30.310.50 375 464 3.0E-30 T 22-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS26955 11793cdd1b5fa42b16af065600fa73ea 466 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 209 222 1.5E-25 T 22-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS26955 11793cdd1b5fa42b16af065600fa73ea 466 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 238 253 1.5E-25 T 22-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS26955 11793cdd1b5fa42b16af065600fa73ea 466 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 104 118 1.5E-25 T 22-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS26955 11793cdd1b5fa42b16af065600fa73ea 466 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 175 194 1.5E-25 T 22-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS26955 11793cdd1b5fa42b16af065600fa73ea 466 Gene3D G3DSA:3.40.120.10 13 142 3.5E-34 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS26955 11793cdd1b5fa42b16af065600fa73ea 466 Gene3D G3DSA:3.40.120.10 256 371 2.0E-45 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS26955 11793cdd1b5fa42b16af065600fa73ea 466 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 263 371 9.7E-23 T 22-04-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS26955 11793cdd1b5fa42b16af065600fa73ea 466 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 105 114 - T 22-04-2016 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS26955 11793cdd1b5fa42b16af065600fa73ea 466 Gene3D G3DSA:3.40.120.10 177 254 5.1E-37 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS26955 11793cdd1b5fa42b16af065600fa73ea 466 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 16 144 7.2E-35 T 22-04-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS06105 0e705f28db13331b34e9bbdfc9cd89e5 525 Pfam PF00171 Aldehyde dehydrogenase family 17 460 2.2E-48 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PP4_RS06105 0e705f28db13331b34e9bbdfc9cd89e5 525 PANTHER PTHR11699:SF10 7 521 1.6E-141 T 22-04-2016 PP4_RS06105 0e705f28db13331b34e9bbdfc9cd89e5 525 SUPERFAMILY SSF53720 19 520 2.88E-101 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS06105 0e705f28db13331b34e9bbdfc9cd89e5 525 Gene3D G3DSA:3.40.309.10 268 456 3.3E-56 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PP4_RS06105 0e705f28db13331b34e9bbdfc9cd89e5 525 PANTHER PTHR11699 7 521 1.6E-141 T 22-04-2016 PP4_RS06105 0e705f28db13331b34e9bbdfc9cd89e5 525 Gene3D G3DSA:3.40.605.10 7 266 1.2E-45 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS04950 01c9f071845cead628f4d97f86ee5240 313 SUPERFAMILY SSF101790 228 306 7.85E-10 T 22-04-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain PP4_RS04950 01c9f071845cead628f4d97f86ee5240 313 PIRSF PIRSF006487 2 272 5.6E-9 T 22-04-2016 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 PP4_RS04950 01c9f071845cead628f4d97f86ee5240 313 Gene3D G3DSA:3.30.70.1400 14 98 1.8E-29 T 22-04-2016 PP4_RS04950 01c9f071845cead628f4d97f86ee5240 313 SUPERFAMILY SSF103025 3 226 2.04E-57 T 22-04-2016 PP4_RS04950 01c9f071845cead628f4d97f86ee5240 313 PANTHER PTHR22602 4 248 3.4E-51 T 22-04-2016 PP4_RS04950 01c9f071845cead628f4d97f86ee5240 313 TIGRFAM TIGR03317 ygfZ_signature: folate-binding protein YgfZ 170 235 1.2E-24 T 22-04-2016 IPR017703 YgfZ/GcvT conserved site PP4_RS04950 01c9f071845cead628f4d97f86ee5240 313 Pfam PF01571 Aminomethyltransferase folate-binding domain 10 162 1.9E-8 T 22-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal PP4_RS04950 01c9f071845cead628f4d97f86ee5240 313 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 210 261 1.4E-4 T 22-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 PP4_RS04950 01c9f071845cead628f4d97f86ee5240 313 PANTHER PTHR22602:SF0 4 248 3.4E-51 T 22-04-2016 PP4_RS13185 fe26ec6487eb74cd2145bd67efd995cc 505 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 190 287 4.8E-29 T 22-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 PP4_RS13185 fe26ec6487eb74cd2145bd67efd995cc 505 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 417 495 1.2E-13 T 22-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 PP4_RS13185 fe26ec6487eb74cd2145bd67efd995cc 505 PANTHER PTHR23309 10 306 2.0E-185 T 22-04-2016 PP4_RS13185 fe26ec6487eb74cd2145bd67efd995cc 505 PANTHER PTHR23309 394 495 2.0E-185 T 22-04-2016 PP4_RS13185 fe26ec6487eb74cd2145bd67efd995cc 505 SUPERFAMILY SSF48179 189 296 3.23E-28 T 22-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PP4_RS13185 fe26ec6487eb74cd2145bd67efd995cc 505 SUPERFAMILY SSF48179 416 500 1.96E-16 T 22-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PP4_RS13185 fe26ec6487eb74cd2145bd67efd995cc 505 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 187 211 - T 22-04-2016 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 PP4_RS13185 fe26ec6487eb74cd2145bd67efd995cc 505 TIGRFAM TIGR02279 PaaC-3OHAcCoADH: 3-hydroxyacyl-CoA dehydrogenase PaaC 3 505 2.1E-283 T 22-04-2016 IPR011967 3-hydroxyacyl-CoA dehydrogenase PaaC GO:0008691|GO:0010124 KEGG: 00040+1.1.1.-|KEGG: 00051+1.1.1.-|KEGG: 00140+1.1.1.-|KEGG: 00240+1.1.1.-|KEGG: 00253+1.1.1.-|KEGG: 00362+1.1.1.-|KEGG: 00363+1.1.1.-|KEGG: 00365+1.1.1.-|KEGG: 00400+1.1.1.-|KEGG: 00520+1.1.1.-|KEGG: 00523+1.1.1.-|KEGG: 00591+1.1.1.-|KEGG: 00622+1.1.1.-|KEGG: 00625+1.1.1.-|KEGG: 00633+1.1.1.-|KEGG: 00640+1.1.1.-|KEGG: 00650+1.1.1.-|KEGG: 00680+1.1.1.-|KEGG: 00720+1.1.1.-|KEGG: 00750+1.1.1.-|KEGG: 00830+1.1.1.-|KEGG: 00950+1.1.1.-|KEGG: 00966+1.1.1.-|KEGG: 00981+1.1.1.-|UniPathway: UPA00930 PP4_RS13185 fe26ec6487eb74cd2145bd67efd995cc 505 PANTHER PTHR23309:SF12 10 306 2.0E-185 T 22-04-2016 PP4_RS13185 fe26ec6487eb74cd2145bd67efd995cc 505 PANTHER PTHR23309:SF12 394 495 2.0E-185 T 22-04-2016 PP4_RS13185 fe26ec6487eb74cd2145bd67efd995cc 505 Gene3D G3DSA:1.10.1040.10 192 287 1.1E-27 T 22-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PP4_RS13185 fe26ec6487eb74cd2145bd67efd995cc 505 Gene3D G3DSA:1.10.1040.10 417 495 6.0E-18 T 22-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PP4_RS13185 fe26ec6487eb74cd2145bd67efd995cc 505 Gene3D G3DSA:3.40.50.720 9 191 4.2E-59 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS13185 fe26ec6487eb74cd2145bd67efd995cc 505 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 9 186 1.1E-60 T 22-04-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 PP4_RS13185 fe26ec6487eb74cd2145bd67efd995cc 505 SUPERFAMILY SSF51735 8 189 3.4E-54 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS18050 008a6fc427f8f587e8a54dae73bb30a5 187 SMART SM00530 18 73 2.4E-12 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS18050 008a6fc427f8f587e8a54dae73bb30a5 187 PANTHER PTHR10245:SF9 13 182 2.8E-31 T 22-04-2016 PP4_RS18050 008a6fc427f8f587e8a54dae73bb30a5 187 Gene3D G3DSA:2.60.120.10 111 182 9.7E-20 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS18050 008a6fc427f8f587e8a54dae73bb30a5 187 Pfam PF07883 Cupin domain 115 181 5.5E-9 T 22-04-2016 IPR013096 Cupin 2, conserved barrel PP4_RS18050 008a6fc427f8f587e8a54dae73bb30a5 187 SUPERFAMILY SSF47413 13 79 5.36E-15 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS18050 008a6fc427f8f587e8a54dae73bb30a5 187 PANTHER PTHR10245 13 182 2.8E-31 T 22-04-2016 PP4_RS18050 008a6fc427f8f587e8a54dae73bb30a5 187 Pfam PF01381 Helix-turn-helix 20 71 7.5E-12 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS18050 008a6fc427f8f587e8a54dae73bb30a5 187 Gene3D G3DSA:1.10.260.40 17 110 2.2E-20 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS18050 008a6fc427f8f587e8a54dae73bb30a5 187 SUPERFAMILY SSF51182 58 181 4.72E-17 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS19150 25bd9e23b02caf06ac7b3704a30a2bee 412 TIGRFAM TIGR00619 sbcd: exonuclease SbcCD, D subunit 1 257 1.4E-52 T 22-04-2016 IPR004593 Nuclease SbcCD subunit D GO:0004519|GO:0006259|GO:0008408 PP4_RS19150 25bd9e23b02caf06ac7b3704a30a2bee 412 PANTHER PTHR30337:SF0 1 410 1.9E-97 T 22-04-2016 PP4_RS19150 25bd9e23b02caf06ac7b3704a30a2bee 412 Pfam PF00149 Calcineurin-like phosphoesterase 1 232 1.4E-12 T 22-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 PP4_RS19150 25bd9e23b02caf06ac7b3704a30a2bee 412 PANTHER PTHR30337 1 410 1.9E-97 T 22-04-2016 PP4_RS19150 25bd9e23b02caf06ac7b3704a30a2bee 412 Gene3D G3DSA:3.60.21.10 1 280 1.4E-64 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS19150 25bd9e23b02caf06ac7b3704a30a2bee 412 SUPERFAMILY SSF56300 1 348 3.66E-53 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS19150 25bd9e23b02caf06ac7b3704a30a2bee 412 Pfam PF12320 Type 5 capsule protein repressor C-terminal domain 284 385 7.5E-17 T 22-04-2016 IPR026843 Nuclease SbcCD subunit D, C-terminal domain PP4_RS06545 9fdfb83a57972ab375f798d38f036195 307 Gene3D G3DSA:1.10.10.10 7 87 3.7E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS06545 9fdfb83a57972ab375f798d38f036195 307 SUPERFAMILY SSF53850 93 290 9.23E-25 T 22-04-2016 PP4_RS06545 9fdfb83a57972ab375f798d38f036195 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 1.3E-18 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS06545 9fdfb83a57972ab375f798d38f036195 307 Gene3D G3DSA:3.40.190.10 180 256 7.6E-9 T 22-04-2016 PP4_RS06545 9fdfb83a57972ab375f798d38f036195 307 SUPERFAMILY SSF46785 5 109 3.5E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS06545 9fdfb83a57972ab375f798d38f036195 307 Gene3D G3DSA:3.40.190.10 88 179 5.7E-7 T 22-04-2016 PP4_RS06545 9fdfb83a57972ab375f798d38f036195 307 Pfam PF03466 LysR substrate binding domain 92 290 5.6E-24 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS06545 9fdfb83a57972ab375f798d38f036195 307 PANTHER PTHR30126 5 307 1.2E-147 T 22-04-2016 PP4_RS06545 9fdfb83a57972ab375f798d38f036195 307 PANTHER PTHR30126:SF19 5 307 1.2E-147 T 22-04-2016 PP4_RS06965 c2125ed504f070c6ac260247ab668007 410 Pfam PF00676 Dehydrogenase E1 component 81 377 1.5E-106 T 22-04-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 PP4_RS06965 c2125ed504f070c6ac260247ab668007 410 PANTHER PTHR11516:SF31 1 408 4.9E-267 T 22-04-2016 PP4_RS06965 c2125ed504f070c6ac260247ab668007 410 Pfam PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal 6 45 2.5E-20 T 22-04-2016 IPR022593 2-oxoisovalerate dehydrogenase, E1 alpha subunit, N-terminal domain KEGG: 00280+1.2.4.4|KEGG: 00640+1.2.4.4|MetaCyc: PWY-5046 PP4_RS06965 c2125ed504f070c6ac260247ab668007 410 PANTHER PTHR11516 1 408 4.9E-267 T 22-04-2016 PP4_RS06965 c2125ed504f070c6ac260247ab668007 410 SUPERFAMILY SSF52518 3 407 3.75E-95 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS06965 c2125ed504f070c6ac260247ab668007 410 Gene3D G3DSA:3.40.50.970 8 407 8.2E-128 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS04165 483969752a4dfa96c4657c55aaca99ad 633 Pfam PF01583 Adenylylsulphate kinase 464 615 3.2E-48 T 22-04-2016 PP4_RS04165 483969752a4dfa96c4657c55aaca99ad 633 SUPERFAMILY SSF52540 18 234 7.26E-61 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS04165 483969752a4dfa96c4657c55aaca99ad 633 SUPERFAMILY SSF52540 463 630 7.86E-26 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS04165 483969752a4dfa96c4657c55aaca99ad 633 Gene3D G3DSA:3.40.50.300 448 633 1.1E-53 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS04165 483969752a4dfa96c4657c55aaca99ad 633 TIGRFAM TIGR02034 CysN: sulfate adenylyltransferase, large subunit 25 432 9.1E-212 T 22-04-2016 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 PP4_RS04165 483969752a4dfa96c4657c55aaca99ad 633 PANTHER PTHR23115 10 51 3.5E-74 T 22-04-2016 PP4_RS04165 483969752a4dfa96c4657c55aaca99ad 633 PANTHER PTHR23115 73 346 3.5E-74 T 22-04-2016 PP4_RS04165 483969752a4dfa96c4657c55aaca99ad 633 PRINTS PR00315 GTP-binding elongation factor signature 107 117 3.6E-13 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS04165 483969752a4dfa96c4657c55aaca99ad 633 PRINTS PR00315 GTP-binding elongation factor signature 160 169 3.6E-13 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS04165 483969752a4dfa96c4657c55aaca99ad 633 PRINTS PR00315 GTP-binding elongation factor signature 87 95 3.6E-13 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS04165 483969752a4dfa96c4657c55aaca99ad 633 PRINTS PR00315 GTP-binding elongation factor signature 123 134 3.6E-13 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS04165 483969752a4dfa96c4657c55aaca99ad 633 PRINTS PR00315 GTP-binding elongation factor signature 26 39 3.6E-13 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS04165 483969752a4dfa96c4657c55aaca99ad 633 SUPERFAMILY SSF50465 331 433 3.21E-33 T 22-04-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal PP4_RS04165 483969752a4dfa96c4657c55aaca99ad 633 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 31 210 1.2E-13 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 PP4_RS04165 483969752a4dfa96c4657c55aaca99ad 633 SUPERFAMILY SSF50447 243 328 4.57E-25 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain PP4_RS04165 483969752a4dfa96c4657c55aaca99ad 633 Pfam PF00009 Elongation factor Tu GTP binding domain 23 225 3.1E-44 T 22-04-2016 PP4_RS04165 483969752a4dfa96c4657c55aaca99ad 633 Gene3D G3DSA:3.40.50.300 11 234 1.2E-70 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS04165 483969752a4dfa96c4657c55aaca99ad 633 Hamap MF_00062 Sulfate adenylyltransferase subunit 1 [cysN]. 16 477 54.389 T 22-04-2016 IPR011779 Sulphate adenylyltransferase, large subunit GO:0006790 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 PP4_RS04165 483969752a4dfa96c4657c55aaca99ad 633 Gene3D G3DSA:2.40.30.10 243 362 2.9E-22 T 22-04-2016 PP4_RS04165 483969752a4dfa96c4657c55aaca99ad 633 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 80 95 - T 22-04-2016 IPR031157 Tr-type G domain, conserved site PP4_RS05650 473633311e37c5e4fac67257523127c3 298 PANTHER PTHR30537 1 295 4.7E-110 T 22-04-2016 PP4_RS05650 473633311e37c5e4fac67257523127c3 298 SUPERFAMILY SSF53850 90 295 8.22E-46 T 22-04-2016 PP4_RS05650 473633311e37c5e4fac67257523127c3 298 Pfam PF03466 LysR substrate binding domain 89 292 3.1E-43 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS05650 473633311e37c5e4fac67257523127c3 298 SUPERFAMILY SSF46785 4 87 1.95E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS05650 473633311e37c5e4fac67257523127c3 298 Gene3D G3DSA:3.40.190.10 178 259 2.5E-6 T 22-04-2016 PP4_RS05650 473633311e37c5e4fac67257523127c3 298 Gene3D G3DSA:1.10.10.10 3 86 1.1E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS05650 473633311e37c5e4fac67257523127c3 298 Gene3D G3DSA:3.40.190.10 92 177 2.3E-21 T 22-04-2016 PP4_RS05650 473633311e37c5e4fac67257523127c3 298 PANTHER PTHR30537:SF24 1 295 4.7E-110 T 22-04-2016 PP4_RS05650 473633311e37c5e4fac67257523127c3 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 2.2E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS05650 473633311e37c5e4fac67257523127c3 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 2.2E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS05650 473633311e37c5e4fac67257523127c3 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 2.2E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS05650 473633311e37c5e4fac67257523127c3 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 2.1E-20 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS01695 33f701f55667a316e59e7ee27c323eaa 314 Gene3D G3DSA:1.10.10.60 264 309 3.4E-15 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS01695 33f701f55667a316e59e7ee27c323eaa 314 SUPERFAMILY SSF46689 262 309 8.96E-11 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS01695 33f701f55667a316e59e7ee27c323eaa 314 Gene3D G3DSA:1.10.10.60 208 263 4.4E-8 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS01695 33f701f55667a316e59e7ee27c323eaa 314 Gene3D G3DSA:3.40.50.880 4 200 1.9E-39 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS01695 33f701f55667a316e59e7ee27c323eaa 314 SMART SM00342 226 309 8.6E-23 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS01695 33f701f55667a316e59e7ee27c323eaa 314 Pfam PF01965 DJ-1/PfpI family 5 171 9.3E-13 T 22-04-2016 IPR002818 DJ-1/PfpI PP4_RS01695 33f701f55667a316e59e7ee27c323eaa 314 SUPERFAMILY SSF52317 4 190 7.75E-43 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS01695 33f701f55667a316e59e7ee27c323eaa 314 Pfam PF12833 Helix-turn-helix domain 232 309 2.8E-21 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS01695 33f701f55667a316e59e7ee27c323eaa 314 PANTHER PTHR11019:SF90 51 309 1.8E-137 T 22-04-2016 PP4_RS01695 33f701f55667a316e59e7ee27c323eaa 314 PANTHER PTHR11019:SF90 1 26 1.8E-137 T 22-04-2016 PP4_RS01695 33f701f55667a316e59e7ee27c323eaa 314 PANTHER PTHR11019 51 309 1.8E-137 T 22-04-2016 PP4_RS01695 33f701f55667a316e59e7ee27c323eaa 314 PANTHER PTHR11019 1 26 1.8E-137 T 22-04-2016 PP4_RS26900 39c9a2ab5cb171d3a0e64f410bd8ea08 496 Pfam PF00392 Bacterial regulatory proteins, gntR family 23 86 1.4E-15 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS26900 39c9a2ab5cb171d3a0e64f410bd8ea08 496 Gene3D G3DSA:3.40.640.10 159 369 1.1E-67 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS26900 39c9a2ab5cb171d3a0e64f410bd8ea08 496 SUPERFAMILY SSF46785 21 95 1.5E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS26900 39c9a2ab5cb171d3a0e64f410bd8ea08 496 SMART SM00345 27 86 2.1E-20 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS26900 39c9a2ab5cb171d3a0e64f410bd8ea08 496 PANTHER PTHR11751 109 492 2.0E-196 T 22-04-2016 PP4_RS26900 39c9a2ab5cb171d3a0e64f410bd8ea08 496 PANTHER PTHR11751:SF275 109 492 2.0E-196 T 22-04-2016 PP4_RS26900 39c9a2ab5cb171d3a0e64f410bd8ea08 496 Gene3D G3DSA:3.90.1150.10 370 483 7.9E-11 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS26900 39c9a2ab5cb171d3a0e64f410bd8ea08 496 Gene3D G3DSA:1.10.10.10 23 91 1.1E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS26900 39c9a2ab5cb171d3a0e64f410bd8ea08 496 SUPERFAMILY SSF53383 104 483 2.92E-98 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS26900 39c9a2ab5cb171d3a0e64f410bd8ea08 496 Pfam PF00155 Aminotransferase class I and II 125 480 5.4E-38 T 22-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PP4_RS06225 deea1886db82f1f015e9c2d00fd14a02 297 PANTHER PTHR12128 1 289 4.0E-94 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS06225 deea1886db82f1f015e9c2d00fd14a02 297 PANTHER PTHR12128:SF34 1 289 4.0E-94 T 22-04-2016 PP4_RS06225 deea1886db82f1f015e9c2d00fd14a02 297 Pfam PF00701 Dihydrodipicolinate synthetase family 2 288 7.5E-60 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS06225 deea1886db82f1f015e9c2d00fd14a02 297 PIRSF PIRSF001365 1 297 2.3E-83 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS06225 deea1886db82f1f015e9c2d00fd14a02 297 Gene3D G3DSA:3.20.20.70 2 290 2.8E-90 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS06225 deea1886db82f1f015e9c2d00fd14a02 297 SUPERFAMILY SSF51569 2 289 3.24E-85 T 22-04-2016 PP4_RS06225 deea1886db82f1f015e9c2d00fd14a02 297 SMART SM01130 2 290 7.6E-96 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS06225 deea1886db82f1f015e9c2d00fd14a02 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 36 57 1.4E-14 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS06225 deea1886db82f1f015e9c2d00fd14a02 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 72 90 1.4E-14 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS06225 deea1886db82f1f015e9c2d00fd14a02 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 129 146 1.4E-14 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS06225 deea1886db82f1f015e9c2d00fd14a02 297 PRINTS PR00146 Dihydrodipicolinate synthase signature 104 120 1.4E-14 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS07910 62cc0e2aea3d6e71bd73c6fd57bb2609 158 PANTHER PTHR30173 4 157 2.0E-53 T 22-04-2016 PP4_RS07910 62cc0e2aea3d6e71bd73c6fd57bb2609 158 Gene3D G3DSA:1.10.1740.10 1 89 1.5E-11 T 22-04-2016 PP4_RS07910 62cc0e2aea3d6e71bd73c6fd57bb2609 158 Pfam PF08281 Sigma-70, region 4 98 149 2.3E-15 T 22-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS07910 62cc0e2aea3d6e71bd73c6fd57bb2609 158 SUPERFAMILY SSF88946 1 79 8.24E-13 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS07910 62cc0e2aea3d6e71bd73c6fd57bb2609 158 Pfam PF04542 Sigma-70 region 2 1 64 1.0E-11 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS07910 62cc0e2aea3d6e71bd73c6fd57bb2609 158 SUPERFAMILY SSF88659 67 155 6.76E-16 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS07910 62cc0e2aea3d6e71bd73c6fd57bb2609 158 Gene3D G3DSA:1.10.10.10 94 155 3.8E-15 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS07910 62cc0e2aea3d6e71bd73c6fd57bb2609 158 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 1 152 5.5E-22 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS07910 62cc0e2aea3d6e71bd73c6fd57bb2609 158 PANTHER PTHR30173:SF30 4 157 2.0E-53 T 22-04-2016 PP4_RS05090 b164c06a7d71d1a6ffb02111bcf5f8c5 1049 SUPERFAMILY SSF56601 500 540 2.42E-5 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS05090 b164c06a7d71d1a6ffb02111bcf5f8c5 1049 SUPERFAMILY SSF56601 672 715 2.42E-5 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS05090 b164c06a7d71d1a6ffb02111bcf5f8c5 1049 SUPERFAMILY SSF56601 750 1024 2.37E-24 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS05090 b164c06a7d71d1a6ffb02111bcf5f8c5 1049 Gene3D G3DSA:1.10.3810.10 168 350 4.5E-7 T 22-04-2016 PP4_RS05090 b164c06a7d71d1a6ffb02111bcf5f8c5 1049 SUPERFAMILY SSF56601 904 983 2.42E-5 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS05090 b164c06a7d71d1a6ffb02111bcf5f8c5 1049 SUPERFAMILY SSF56601 598 637 2.42E-5 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS05090 b164c06a7d71d1a6ffb02111bcf5f8c5 1049 Pfam PF00912 Transglycosylase 154 353 2.5E-26 T 22-04-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 PP4_RS05090 b164c06a7d71d1a6ffb02111bcf5f8c5 1049 Gene3D G3DSA:3.40.710.10 577 677 2.9E-36 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS05090 b164c06a7d71d1a6ffb02111bcf5f8c5 1049 Gene3D G3DSA:3.40.710.10 412 528 2.9E-36 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS05090 b164c06a7d71d1a6ffb02111bcf5f8c5 1049 Gene3D G3DSA:3.40.710.10 848 1008 2.9E-36 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS05090 b164c06a7d71d1a6ffb02111bcf5f8c5 1049 SUPERFAMILY SSF53955 164 316 1.6E-8 T 22-04-2016 IPR023346 Lysozyme-like domain PP4_RS03060 43bd6d3553d81c42c13770191e4ba633 545 Pfam PF00924 Mechanosensitive ion channel 311 514 4.8E-32 T 22-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 PP4_RS03060 43bd6d3553d81c42c13770191e4ba633 545 Gene3D G3DSA:2.30.30.60 370 418 1.4E-14 T 22-04-2016 PP4_RS03060 43bd6d3553d81c42c13770191e4ba633 545 SUPERFAMILY SSF82689 427 519 3.79E-12 T 22-04-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 PP4_RS03060 43bd6d3553d81c42c13770191e4ba633 545 Gene3D G3DSA:3.30.70.100 429 474 2.8E-6 T 22-04-2016 PP4_RS03060 43bd6d3553d81c42c13770191e4ba633 545 PANTHER PTHR30221 113 519 2.2E-89 T 22-04-2016 PP4_RS03060 43bd6d3553d81c42c13770191e4ba633 545 PANTHER PTHR30221:SF4 113 519 2.2E-89 T 22-04-2016 PP4_RS03060 43bd6d3553d81c42c13770191e4ba633 545 SUPERFAMILY SSF50182 355 419 1.21E-12 T 22-04-2016 IPR010920 LSM domain PP4_RS13260 f1da89b92a3b3e29cc27cf0a3f49df48 508 SUPERFAMILY SSF48173 224 491 1.22E-55 T 22-04-2016 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain PP4_RS13260 f1da89b92a3b3e29cc27cf0a3f49df48 508 Pfam PF04244 Deoxyribodipyrimidine photo-lyase-related protein 5 223 2.1E-78 T 22-04-2016 IPR007357 Deoxyribodipyrimidine photolyase-related protein PP4_RS13260 f1da89b92a3b3e29cc27cf0a3f49df48 508 Gene3D G3DSA:1.25.40.80 223 306 4.7E-10 T 22-04-2016 PP4_RS13260 f1da89b92a3b3e29cc27cf0a3f49df48 508 Gene3D G3DSA:1.10.579.10 307 396 1.0E-4 T 22-04-2016 PP4_RS13260 f1da89b92a3b3e29cc27cf0a3f49df48 508 PANTHER PTHR38657:SF1 1 507 1.4E-191 T 22-04-2016 PP4_RS13260 f1da89b92a3b3e29cc27cf0a3f49df48 508 PANTHER PTHR38657 1 507 1.4E-191 T 22-04-2016 PP4_RS17165 ec301d55ba8e535409d50816628369e1 163 Gene3D G3DSA:1.10.238.10 91 158 5.5E-10 T 22-04-2016 IPR011992 EF-hand domain pair PP4_RS17165 ec301d55ba8e535409d50816628369e1 163 Pfam PF13202 EF hand 92 112 4.5E-4 T 22-04-2016 IPR002048 EF-hand domain GO:0005509 PP4_RS17165 ec301d55ba8e535409d50816628369e1 163 Pfam PF13202 EF hand 120 135 0.0013 T 22-04-2016 IPR002048 EF-hand domain GO:0005509 PP4_RS17165 ec301d55ba8e535409d50816628369e1 163 ProSitePatterns PS00018 EF-hand calcium-binding domain. 97 109 - T 22-04-2016 IPR018247 EF-Hand 1, calcium-binding site PP4_RS17165 ec301d55ba8e535409d50816628369e1 163 SUPERFAMILY SSF47473 89 150 1.99E-10 T 22-04-2016 IPR011992 EF-hand domain pair PP4_RS26195 3124e2653a5f7c638d91cecd12d9da16 341 PIRSF PIRSF002825 3 332 1.6E-90 T 22-04-2016 IPR026045 Ferric binding protein PP4_RS26195 3124e2653a5f7c638d91cecd12d9da16 341 Pfam PF13343 Bacterial extracellular solute-binding protein 75 312 5.3E-28 T 22-04-2016 PP4_RS26195 3124e2653a5f7c638d91cecd12d9da16 341 PANTHER PTHR30006:SF9 5 339 7.3E-131 T 22-04-2016 PP4_RS26195 3124e2653a5f7c638d91cecd12d9da16 341 TIGRFAM TIGR03261 phnS2: putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein 8 336 6.7E-161 T 22-04-2016 IPR017663 ABC transport system, 1-aminoethylphosphonate-binding protein, putative PP4_RS26195 3124e2653a5f7c638d91cecd12d9da16 341 Gene3D G3DSA:3.40.190.10 126 263 2.1E-42 T 22-04-2016 PP4_RS26195 3124e2653a5f7c638d91cecd12d9da16 341 SUPERFAMILY SSF53850 21 329 3.85E-68 T 22-04-2016 PP4_RS26195 3124e2653a5f7c638d91cecd12d9da16 341 Gene3D G3DSA:3.40.190.10 264 323 7.9E-43 T 22-04-2016 PP4_RS26195 3124e2653a5f7c638d91cecd12d9da16 341 Gene3D G3DSA:3.40.190.10 5 123 7.9E-43 T 22-04-2016 PP4_RS26195 3124e2653a5f7c638d91cecd12d9da16 341 PANTHER PTHR30006 5 339 7.3E-131 T 22-04-2016 PP4_RS21505 e9d8d01030c6fa59b4e3714698342468 582 TIGRFAM TIGR02517 type_II_gspD: type II secretion system protein D 250 540 4.2E-112 T 22-04-2016 IPR013356 Type II secretion system GspD GO:0008565|GO:0015627|GO:0015628|GO:0019867 PP4_RS21505 e9d8d01030c6fa59b4e3714698342468 582 PANTHER PTHR30332 31 551 4.3E-104 T 22-04-2016 PP4_RS21505 e9d8d01030c6fa59b4e3714698342468 582 Pfam PF03958 Bacterial type II/III secretion system short domain 131 192 8.5E-9 T 22-04-2016 IPR005644 NolW-like PP4_RS21505 e9d8d01030c6fa59b4e3714698342468 582 Pfam PF03958 Bacterial type II/III secretion system short domain 199 285 2.1E-17 T 22-04-2016 IPR005644 NolW-like PP4_RS21505 e9d8d01030c6fa59b4e3714698342468 582 PRINTS PR00811 Bacterial general secretion pathway protein D signature 368 392 3.8E-36 T 22-04-2016 IPR001775 GspD/PilQ family PP4_RS21505 e9d8d01030c6fa59b4e3714698342468 582 PRINTS PR00811 Bacterial general secretion pathway protein D signature 497 515 3.8E-36 T 22-04-2016 IPR001775 GspD/PilQ family PP4_RS21505 e9d8d01030c6fa59b4e3714698342468 582 PRINTS PR00811 Bacterial general secretion pathway protein D signature 285 295 3.8E-36 T 22-04-2016 IPR001775 GspD/PilQ family PP4_RS21505 e9d8d01030c6fa59b4e3714698342468 582 PRINTS PR00811 Bacterial general secretion pathway protein D signature 403 413 3.8E-36 T 22-04-2016 IPR001775 GspD/PilQ family PP4_RS21505 e9d8d01030c6fa59b4e3714698342468 582 PRINTS PR00811 Bacterial general secretion pathway protein D signature 520 534 3.8E-36 T 22-04-2016 IPR001775 GspD/PilQ family PP4_RS21505 e9d8d01030c6fa59b4e3714698342468 582 Pfam PF00263 Bacterial type II and III secretion system protein 372 533 1.1E-50 T 22-04-2016 IPR004846 Type II/III secretion system GO:0009306 PP4_RS21505 e9d8d01030c6fa59b4e3714698342468 582 PANTHER PTHR30332:SF3 31 551 4.3E-104 T 22-04-2016 PP4_RS01995 4765f846a3dc1e8f50145eab0abe9bdc 352 Pfam PF04055 Radical SAM superfamily 56 207 8.5E-14 T 22-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 PP4_RS01995 4765f846a3dc1e8f50145eab0abe9bdc 352 Gene3D G3DSA:3.20.20.70 11 319 1.5E-102 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS01995 4765f846a3dc1e8f50145eab0abe9bdc 352 SMART SM00876 226 318 3.5E-47 T 22-04-2016 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 PP4_RS01995 4765f846a3dc1e8f50145eab0abe9bdc 352 SMART SM00729 49 261 3.5E-37 T 22-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 PP4_RS01995 4765f846a3dc1e8f50145eab0abe9bdc 352 TIGRFAM TIGR00433 bioB: biotin synthase 20 316 3.8E-123 T 22-04-2016 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 PP4_RS01995 4765f846a3dc1e8f50145eab0abe9bdc 352 PANTHER PTHR22976 13 352 2.4E-188 T 22-04-2016 PP4_RS01995 4765f846a3dc1e8f50145eab0abe9bdc 352 PANTHER PTHR22976:SF1 13 352 2.4E-188 T 22-04-2016 PP4_RS01995 4765f846a3dc1e8f50145eab0abe9bdc 352 Pfam PF06968 Biotin and Thiamin Synthesis associated domain 226 316 5.3E-20 T 22-04-2016 IPR010722 Biotin and thiamin synthesis-associated domain KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 PP4_RS01995 4765f846a3dc1e8f50145eab0abe9bdc 352 SUPERFAMILY SSF102114 11 319 9.94E-91 T 22-04-2016 PP4_RS01995 4765f846a3dc1e8f50145eab0abe9bdc 352 Hamap MF_01694 Biotin synthase [bioB]. 11 319 41.631 T 22-04-2016 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB GO:0004076|GO:0009102 KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 PP4_RS01995 4765f846a3dc1e8f50145eab0abe9bdc 352 PIRSF PIRSF001619 1 325 1.1E-134 T 22-04-2016 IPR024177 Biotin synthase KEGG: 00780+2.8.1.6|MetaCyc: PWY-7380|UniPathway: UPA00078 PP4_RS01680 3b3817aa55319851d1d50f0c718400db 321 Gene3D G3DSA:3.40.50.720 5 189 2.6E-43 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS01680 3b3817aa55319851d1d50f0c718400db 321 Hamap MF_02129 L-carnitine dehydrogenase [lcdH]. 8 318 55.241 T 22-04-2016 IPR026578 L-carnitine dehydrogenase KEGG: 00040+1.1.1.10|MetaCyc: PWY-3602|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-7472|UniPathway: UPA00117 PP4_RS01680 3b3817aa55319851d1d50f0c718400db 321 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 188 281 4.0E-15 T 22-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 PP4_RS01680 3b3817aa55319851d1d50f0c718400db 321 SUPERFAMILY SSF51735 6 185 1.14E-48 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS01680 3b3817aa55319851d1d50f0c718400db 321 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 11 184 1.5E-41 T 22-04-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 PP4_RS01680 3b3817aa55319851d1d50f0c718400db 321 PANTHER PTHR23309 5 315 7.8E-101 T 22-04-2016 PP4_RS01680 3b3817aa55319851d1d50f0c718400db 321 PANTHER PTHR23309:SF17 5 315 7.8E-101 T 22-04-2016 PP4_RS01680 3b3817aa55319851d1d50f0c718400db 321 Gene3D G3DSA:1.10.1040.10 190 260 1.4E-9 T 22-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PP4_RS01680 3b3817aa55319851d1d50f0c718400db 321 SUPERFAMILY SSF48179 188 277 7.31E-16 T 22-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PP4_RS25595 3df5596116ab3bfd990c1f712658560b 256 TIGRFAM TIGR01934 MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 30 255 5.8E-84 T 22-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 PP4_RS25595 3df5596116ab3bfd990c1f712658560b 256 PANTHER PTHR10108:SF864 11 255 3.2E-169 T 22-04-2016 PP4_RS25595 3df5596116ab3bfd990c1f712658560b 256 Gene3D G3DSA:3.40.50.150 28 251 2.0E-59 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS25595 3df5596116ab3bfd990c1f712658560b 256 SUPERFAMILY SSF53335 19 252 1.16E-52 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS25595 3df5596116ab3bfd990c1f712658560b 256 Hamap MF_01813 Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 21 255 38.758 T 22-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 PP4_RS25595 3df5596116ab3bfd990c1f712658560b 256 Pfam PF01209 ubiE/COQ5 methyltransferase family 25 255 8.9E-100 T 22-04-2016 IPR004033 UbiE/COQ5 methyltransferase GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 PP4_RS25595 3df5596116ab3bfd990c1f712658560b 256 PANTHER PTHR10108 11 255 3.2E-169 T 22-04-2016 PP4_RS25595 3df5596116ab3bfd990c1f712658560b 256 ProSitePatterns PS01184 ubiE/COQ5 methyltransferase family signature 2. 163 177 - T 22-04-2016 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 PP4_RS25595 3df5596116ab3bfd990c1f712658560b 256 ProSitePatterns PS01183 ubiE/COQ5 methyltransferase family signature 1. 41 56 - T 22-04-2016 IPR023576 UbiE/COQ5 methyltransferase, conserved site GO:0008168 KEGG: 00130+2.1.1.163|KEGG: 00564+2.1.1.16|MetaCyc: PWY-5839|MetaCyc: PWY-5844|MetaCyc: PWY-5849|MetaCyc: PWY-5890|MetaCyc: PWY-5891|MetaCyc: PWY-5892|MetaCyc: PWY-5895|UniPathway: UPA00079 PP4_RS21010 f405456dbbb97451fbf6d8abb4b7f3dc 450 Gene3D G3DSA:2.30.42.10 207 293 1.5E-18 T 22-04-2016 IPR001478 PDZ domain GO:0005515 PP4_RS21010 f405456dbbb97451fbf6d8abb4b7f3dc 450 Pfam PF02163 Peptidase family M50 11 436 1.2E-81 T 22-04-2016 IPR008915 Peptidase M50 GO:0004222|GO:0006508 PP4_RS21010 f405456dbbb97451fbf6d8abb4b7f3dc 450 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 4 450 1.5E-124 T 22-04-2016 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 PP4_RS21010 f405456dbbb97451fbf6d8abb4b7f3dc 450 Pfam PF13180 PDZ domain 226 289 9.7E-11 T 22-04-2016 IPR001478 PDZ domain GO:0005515 PP4_RS21010 f405456dbbb97451fbf6d8abb4b7f3dc 450 SUPERFAMILY SSF50156 87 187 3.68E-14 T 22-04-2016 IPR001478 PDZ domain GO:0005515 PP4_RS21010 f405456dbbb97451fbf6d8abb4b7f3dc 450 SMART SM00228 211 280 2.1E-8 T 22-04-2016 IPR001478 PDZ domain GO:0005515 PP4_RS21010 f405456dbbb97451fbf6d8abb4b7f3dc 450 SMART SM00228 114 186 1.4E-4 T 22-04-2016 IPR001478 PDZ domain GO:0005515 PP4_RS21010 f405456dbbb97451fbf6d8abb4b7f3dc 450 Gene3D G3DSA:2.30.42.10 95 193 8.2E-16 T 22-04-2016 IPR001478 PDZ domain GO:0005515 PP4_RS21010 f405456dbbb97451fbf6d8abb4b7f3dc 450 SUPERFAMILY SSF50156 208 291 1.84E-16 T 22-04-2016 IPR001478 PDZ domain GO:0005515 PP4_RS21010 f405456dbbb97451fbf6d8abb4b7f3dc 450 PANTHER PTHR22939 205 450 3.5E-80 T 22-04-2016 PP4_RS21010 f405456dbbb97451fbf6d8abb4b7f3dc 450 PANTHER PTHR22939:SF78 205 450 3.5E-80 T 22-04-2016 PP4_RS14275 ea88225f01f8ad273cdea2c786968149 141 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 9 141 2.3E-58 T 22-04-2016 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 PP4_RS14275 ea88225f01f8ad273cdea2c786968149 141 PANTHER PTHR30093 8 141 3.2E-46 T 22-04-2016 PP4_RS14275 ea88225f01f8ad273cdea2c786968149 141 PANTHER PTHR30093:SF9 8 141 3.2E-46 T 22-04-2016 PP4_RS14275 ea88225f01f8ad273cdea2c786968149 141 Pfam PF08334 Type II secretion system (T2SS), protein G 34 140 1.7E-42 T 22-04-2016 IPR013545 Type II secretion system protein G PP4_RS14275 ea88225f01f8ad273cdea2c786968149 141 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 8 31 5.3E-9 T 22-04-2016 IPR012902 Prokaryotic N-terminal methylation site PP4_RS14275 ea88225f01f8ad273cdea2c786968149 141 PRINTS PR00813 Bacterial general secretion pathway protein G signature 46 64 7.9E-16 T 22-04-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 PP4_RS14275 ea88225f01f8ad273cdea2c786968149 141 PRINTS PR00813 Bacterial general secretion pathway protein G signature 10 35 7.9E-16 T 22-04-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 PP4_RS14275 ea88225f01f8ad273cdea2c786968149 141 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 9 29 - T 22-04-2016 IPR012902 Prokaryotic N-terminal methylation site PP4_RS14275 ea88225f01f8ad273cdea2c786968149 141 Gene3D G3DSA:3.30.700.10 11 75 5.6E-8 T 22-04-2016 PP4_RS14275 ea88225f01f8ad273cdea2c786968149 141 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 6 30 1.2E-8 T 22-04-2016 IPR012902 Prokaryotic N-terminal methylation site PP4_RS14275 ea88225f01f8ad273cdea2c786968149 141 SUPERFAMILY SSF54523 37 140 9.94E-35 T 22-04-2016 PP4_RS22605 f3cce546128eaf944a353143fc00b934 315 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 248 261 - T 22-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 PP4_RS22605 f3cce546128eaf944a353143fc00b934 315 PANTHER PTHR10584:SF170 3 312 1.8E-104 T 22-04-2016 PP4_RS22605 f3cce546128eaf944a353143fc00b934 315 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 38 62 - T 22-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 PP4_RS22605 f3cce546128eaf944a353143fc00b934 315 Gene3D G3DSA:3.40.1190.20 38 308 4.3E-81 T 22-04-2016 IPR029056 Ribokinase-like PP4_RS22605 f3cce546128eaf944a353143fc00b934 315 SUPERFAMILY SSF53613 4 290 1.14E-65 T 22-04-2016 IPR029056 Ribokinase-like PP4_RS22605 f3cce546128eaf944a353143fc00b934 315 TIGRFAM TIGR03828 pfkB: 1-phosphofructokinase 4 307 1.9E-104 T 22-04-2016 IPR022463 Fructose 1-phosphate kinase GO:0008662 KEGG: 00051+2.7.1.56 PP4_RS22605 f3cce546128eaf944a353143fc00b934 315 Gene3D G3DSA:2.20.150.10 11 37 4.2E-6 T 22-04-2016 IPR023314 Tagatose-6-phosphate kinase/1-phosphofructokinase N-terminal domain KEGG: 00052+2.7.1.144|KEGG: 00710+2.7.1.14|MetaCyc: PWY-7077|MetaCyc: PWY-7395|UniPathway: UPA00704 PP4_RS22605 f3cce546128eaf944a353143fc00b934 315 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 4 307 3.4E-104 T 22-04-2016 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 PP4_RS22605 f3cce546128eaf944a353143fc00b934 315 Pfam PF00294 pfkB family carbohydrate kinase 24 290 1.6E-47 T 22-04-2016 IPR011611 Carbohydrate kinase PfkB PP4_RS22605 f3cce546128eaf944a353143fc00b934 315 PIRSF PIRSF000535 1 310 4.8E-94 T 22-04-2016 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 PP4_RS22605 f3cce546128eaf944a353143fc00b934 315 PANTHER PTHR10584 3 312 1.8E-104 T 22-04-2016 PP4_RS00615 49445441c0f0c7b1d5591f54869e2d2c 593 SUPERFAMILY SSF55874 430 593 5.89E-47 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS00615 49445441c0f0c7b1d5591f54869e2d2c 593 SMART SM00387 487 593 2.7E-31 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS00615 49445441c0f0c7b1d5591f54869e2d2c 593 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 488 592 5.6E-23 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS00615 49445441c0f0c7b1d5591f54869e2d2c 593 Pfam PF16767 Sensor domain of alginate biosynthesis sensor protein KinB 41 155 1.1E-34 T 22-04-2016 IPR031909 Alginate biosynthesis sensor protein KinB, sensor domain PP4_RS00615 49445441c0f0c7b1d5591f54869e2d2c 593 Gene3D G3DSA:3.30.450.20 253 364 1.4E-18 T 22-04-2016 PP4_RS00615 49445441c0f0c7b1d5591f54869e2d2c 593 Pfam PF00512 His Kinase A (phospho-acceptor) domain 374 441 2.8E-13 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS00615 49445441c0f0c7b1d5591f54869e2d2c 593 SMART SM00388 373 441 2.5E-16 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS00615 49445441c0f0c7b1d5591f54869e2d2c 593 PRINTS PR00344 Bacterial sensor protein C-terminal signature 579 592 3.5E-19 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS00615 49445441c0f0c7b1d5591f54869e2d2c 593 PRINTS PR00344 Bacterial sensor protein C-terminal signature 542 552 3.5E-19 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS00615 49445441c0f0c7b1d5591f54869e2d2c 593 PRINTS PR00344 Bacterial sensor protein C-terminal signature 524 538 3.5E-19 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS00615 49445441c0f0c7b1d5591f54869e2d2c 593 PRINTS PR00344 Bacterial sensor protein C-terminal signature 555 573 3.5E-19 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS00615 49445441c0f0c7b1d5591f54869e2d2c 593 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 255 371 2.6E-9 T 22-04-2016 IPR000014 PAS domain PP4_RS00615 49445441c0f0c7b1d5591f54869e2d2c 593 Gene3D G3DSA:3.30.565.10 427 593 2.8E-45 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS00615 49445441c0f0c7b1d5591f54869e2d2c 593 SMART SM00091 256 322 6.8E-6 T 22-04-2016 IPR000014 PAS domain PP4_RS00615 49445441c0f0c7b1d5591f54869e2d2c 593 SMART SM00304 193 245 6.6E-10 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS00615 49445441c0f0c7b1d5591f54869e2d2c 593 PANTHER PTHR24423:SF564 123 142 8.8E-134 T 22-04-2016 PP4_RS00615 49445441c0f0c7b1d5591f54869e2d2c 593 PANTHER PTHR24423:SF564 6 36 8.8E-134 T 22-04-2016 PP4_RS00615 49445441c0f0c7b1d5591f54869e2d2c 593 PANTHER PTHR24423:SF564 254 593 8.8E-134 T 22-04-2016 PP4_RS00615 49445441c0f0c7b1d5591f54869e2d2c 593 SUPERFAMILY SSF158472 193 242 5.75E-7 T 22-04-2016 PP4_RS00615 49445441c0f0c7b1d5591f54869e2d2c 593 SUPERFAMILY SSF47384 358 441 7.26E-17 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS00615 49445441c0f0c7b1d5591f54869e2d2c 593 Pfam PF08448 PAS fold 262 368 1.2E-13 T 22-04-2016 IPR013656 PAS fold-4 PP4_RS00615 49445441c0f0c7b1d5591f54869e2d2c 593 Pfam PF00672 HAMP domain 174 241 2.7E-11 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS00615 49445441c0f0c7b1d5591f54869e2d2c 593 Gene3D G3DSA:1.10.287.130 365 426 1.4E-15 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS00615 49445441c0f0c7b1d5591f54869e2d2c 593 SUPERFAMILY SSF55785 249 365 2.62E-14 T 22-04-2016 IPR000014 PAS domain PP4_RS00615 49445441c0f0c7b1d5591f54869e2d2c 593 PANTHER PTHR24423 123 142 8.8E-134 T 22-04-2016 PP4_RS00615 49445441c0f0c7b1d5591f54869e2d2c 593 PANTHER PTHR24423 6 36 8.8E-134 T 22-04-2016 PP4_RS00615 49445441c0f0c7b1d5591f54869e2d2c 593 PANTHER PTHR24423 254 593 8.8E-134 T 22-04-2016 PP4_RS17955 c905c5ec079c929efab8aca5b4e916c9 595 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 3 32 1.4E-4 T 22-04-2016 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria PP4_RS17955 c905c5ec079c929efab8aca5b4e916c9 595 Gene3D G3DSA:1.10.540.10 41 159 2.0E-14 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS17955 c905c5ec079c929efab8aca5b4e916c9 595 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 282 450 4.3E-21 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS17955 c905c5ec079c929efab8aca5b4e916c9 595 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 466 588 2.5E-31 T 22-04-2016 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain PP4_RS17955 c905c5ec079c929efab8aca5b4e916c9 595 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 163 271 4.5E-16 T 22-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 PP4_RS17955 c905c5ec079c929efab8aca5b4e916c9 595 PANTHER PTHR10909:SF296 1 475 8.8E-197 T 22-04-2016 PP4_RS17955 c905c5ec079c929efab8aca5b4e916c9 595 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 41 157 7.9E-10 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS17955 c905c5ec079c929efab8aca5b4e916c9 595 PANTHER PTHR10909 1 475 8.8E-197 T 22-04-2016 PP4_RS17955 c905c5ec079c929efab8aca5b4e916c9 595 Gene3D G3DSA:1.20.140.10 269 461 4.1E-46 T 22-04-2016 PP4_RS17955 c905c5ec079c929efab8aca5b4e916c9 595 SUPERFAMILY SSF56645 39 280 3.4E-54 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 PP4_RS17955 c905c5ec079c929efab8aca5b4e916c9 595 Gene3D G3DSA:2.40.110.10 161 268 1.1E-25 T 22-04-2016 PP4_RS17955 c905c5ec079c929efab8aca5b4e916c9 595 SUPERFAMILY SSF47203 287 473 1.93E-44 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS08170 7b353ce6c994f9338307a5329a3cc606 411 SUPERFAMILY SSF54373 323 402 7.2E-8 T 22-04-2016 PP4_RS08170 7b353ce6c994f9338307a5329a3cc606 411 Pfam PF01593 Flavin containing amine oxidoreductase 6 78 7.9E-11 T 22-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 PP4_RS08170 7b353ce6c994f9338307a5329a3cc606 411 Pfam PF01593 Flavin containing amine oxidoreductase 94 201 3.0E-18 T 22-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 PP4_RS08170 7b353ce6c994f9338307a5329a3cc606 411 Pfam PF01593 Flavin containing amine oxidoreductase 233 403 3.0E-25 T 22-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 PP4_RS08170 7b353ce6c994f9338307a5329a3cc606 411 PANTHER PTHR10742 84 403 7.3E-59 T 22-04-2016 PP4_RS08170 7b353ce6c994f9338307a5329a3cc606 411 PANTHER PTHR10742:SF61 84 403 7.3E-59 T 22-04-2016 PP4_RS08170 7b353ce6c994f9338307a5329a3cc606 411 Gene3D G3DSA:3.50.50.60 10 80 2.4E-9 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS08170 7b353ce6c994f9338307a5329a3cc606 411 SUPERFAMILY SSF51905 84 343 3.56E-50 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS08170 7b353ce6c994f9338307a5329a3cc606 411 Gene3D G3DSA:3.50.50.60 249 340 3.3E-52 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS08170 7b353ce6c994f9338307a5329a3cc606 411 Gene3D G3DSA:3.50.50.60 84 164 3.3E-52 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS00560 4cf74a258c69fa7e79592a4477e95a2b 316 Gene3D G3DSA:3.90.1200.10 105 307 1.4E-55 T 22-04-2016 PP4_RS00560 4cf74a258c69fa7e79592a4477e95a2b 316 PANTHER PTHR21064 12 283 1.0E-38 T 22-04-2016 PP4_RS00560 4cf74a258c69fa7e79592a4477e95a2b 316 SUPERFAMILY SSF56112 5 307 3.64E-65 T 22-04-2016 IPR011009 Protein kinase-like domain PP4_RS00560 4cf74a258c69fa7e79592a4477e95a2b 316 Hamap MF_00301 Homoserine kinase [thrB]. 1 316 144.832 T 22-04-2016 IPR005280 Homoserine kinase ThrB GO:0004413|GO:0009088 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702|UniPathway: UPA00050 PP4_RS00560 4cf74a258c69fa7e79592a4477e95a2b 316 Pfam PF01636 Phosphotransferase enzyme family 28 255 1.7E-34 T 22-04-2016 IPR002575 Aminoglycoside phosphotransferase PP4_RS00560 4cf74a258c69fa7e79592a4477e95a2b 316 Gene3D G3DSA:3.30.200.20 1 102 3.8E-35 T 22-04-2016 PP4_RS00560 4cf74a258c69fa7e79592a4477e95a2b 316 TIGRFAM TIGR00938 thrB_alt: homoserine kinase 1 303 8.2E-89 T 22-04-2016 IPR005280 Homoserine kinase ThrB GO:0004413|GO:0009088 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702|UniPathway: UPA00050 PP4_RS20750 cde7c06f634ff59902462337d3106a42 239 Pfam PF00486 Transcriptional regulatory protein, C terminal 162 233 9.3E-17 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS20750 cde7c06f634ff59902462337d3106a42 239 PANTHER PTHR26402 9 233 2.3E-101 T 22-04-2016 PP4_RS20750 cde7c06f634ff59902462337d3106a42 239 SUPERFAMILY SSF46894 130 233 1.9E-21 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS20750 cde7c06f634ff59902462337d3106a42 239 Gene3D G3DSA:1.10.10.10 135 234 1.3E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS20750 cde7c06f634ff59902462337d3106a42 239 Gene3D G3DSA:3.40.50.2300 10 131 1.6E-36 T 22-04-2016 PP4_RS20750 cde7c06f634ff59902462337d3106a42 239 SUPERFAMILY SSF52172 10 138 1.21E-37 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS20750 cde7c06f634ff59902462337d3106a42 239 SMART SM00448 9 119 4.1E-37 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS20750 cde7c06f634ff59902462337d3106a42 239 Pfam PF00072 Response regulator receiver domain 11 119 1.6E-24 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS20750 cde7c06f634ff59902462337d3106a42 239 SMART SM00862 156 233 7.9E-16 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS20750 cde7c06f634ff59902462337d3106a42 239 PANTHER PTHR26402:SF545 9 233 2.3E-101 T 22-04-2016 PP4_RS15825 c9f254fe4f1bce7eaca33c05b82ea8a0 231 Gene3D G3DSA:1.10.1530.10 1 107 4.6E-5 T 22-04-2016 PP4_RS15825 c9f254fe4f1bce7eaca33c05b82ea8a0 231 Pfam PF12525 Protein of unknown function (DUF3726) 3 80 9.3E-19 T 22-04-2016 IPR022201 Protein of unknown function DUF3726 PP4_RS15825 c9f254fe4f1bce7eaca33c05b82ea8a0 231 SUPERFAMILY SSF89733 1 133 3.79E-11 T 22-04-2016 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS24100 532a29d4bada07d1d5d1ecc37afae24f 840 Gene3D G3DSA:3.40.50.300 209 351 7.3E-18 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS24100 532a29d4bada07d1d5d1ecc37afae24f 840 SMART SM00490 234 334 3.8E-21 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS24100 532a29d4bada07d1d5d1ecc37afae24f 840 SUPERFAMILY SSF52540 24 439 4.35E-55 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS24100 532a29d4bada07d1d5d1ecc37afae24f 840 Pfam PF04408 Helicase associated domain (HA2) 394 472 2.5E-15 T 22-04-2016 IPR007502 Helicase-associated domain GO:0004386 PP4_RS24100 532a29d4bada07d1d5d1ecc37afae24f 840 Pfam PF00270 DEAD/DEAH box helicase 17 168 1.4E-7 T 22-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 PP4_RS24100 532a29d4bada07d1d5d1ecc37afae24f 840 SMART SM00847 393 485 9.8E-20 T 22-04-2016 IPR007502 Helicase-associated domain GO:0004386 PP4_RS24100 532a29d4bada07d1d5d1ecc37afae24f 840 PIRSF PIRSF005496 1 840 0.0 T 22-04-2016 IPR010225 RNA helicase, ATP-dependent DEAH box, HrpB-type PP4_RS24100 532a29d4bada07d1d5d1ecc37afae24f 840 PANTHER PTHR18934 3 456 2.0E-161 T 22-04-2016 PP4_RS24100 532a29d4bada07d1d5d1ecc37afae24f 840 PANTHER PTHR18934 725 734 2.0E-161 T 22-04-2016 PP4_RS24100 532a29d4bada07d1d5d1ecc37afae24f 840 Pfam PF08482 ATP-dependent helicase C-terminal 695 826 1.7E-53 T 22-04-2016 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal PP4_RS24100 532a29d4bada07d1d5d1ecc37afae24f 840 Pfam PF00271 Helicase conserved C-terminal domain 210 333 5.0E-14 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS24100 532a29d4bada07d1d5d1ecc37afae24f 840 Gene3D G3DSA:3.40.50.300 3 164 3.3E-46 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS24100 532a29d4bada07d1d5d1ecc37afae24f 840 TIGRFAM TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB 4 838 0.0 T 22-04-2016 IPR010225 RNA helicase, ATP-dependent DEAH box, HrpB-type PP4_RS24100 532a29d4bada07d1d5d1ecc37afae24f 840 SMART SM00487 5 203 2.1E-16 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PP4_RS25005 d10f20ead91e448d940dd2c8de6e3ab6 86 SUPERFAMILY SSF50182 7 69 3.89E-24 T 22-04-2016 IPR010920 LSM domain PP4_RS25005 d10f20ead91e448d940dd2c8de6e3ab6 86 Gene3D G3DSA:2.30.30.100 1 73 2.2E-36 T 22-04-2016 PP4_RS25005 d10f20ead91e448d940dd2c8de6e3ab6 86 TIGRFAM TIGR02383 Hfq: RNA chaperone Hfq 6 64 3.4E-30 T 22-04-2016 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 PP4_RS25005 d10f20ead91e448d940dd2c8de6e3ab6 86 Hamap MF_00436 RNA-binding protein Hfq [hfq]. 1 64 27.536 T 22-04-2016 IPR005001 RNA-binding protein Hfq GO:0003723|GO:0006355 PP4_RS25005 d10f20ead91e448d940dd2c8de6e3ab6 86 PANTHER PTHR34772 1 85 4.4E-40 T 22-04-2016 PP4_RS25005 d10f20ead91e448d940dd2c8de6e3ab6 86 PANTHER PTHR34772:SF1 1 85 4.4E-40 T 22-04-2016 PP4_RS26920 d49403c9a2ef41a7ed337fc44ad7e4a0 119 SUPERFAMILY SSF51182 15 115 7.48E-20 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS26920 d49403c9a2ef41a7ed337fc44ad7e4a0 119 Gene3D G3DSA:2.60.120.10 18 118 3.3E-34 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS26920 d49403c9a2ef41a7ed337fc44ad7e4a0 119 Pfam PF05899 Protein of unknown function (DUF861) 41 113 3.4E-21 T 22-04-2016 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 PP4_RS26920 d49403c9a2ef41a7ed337fc44ad7e4a0 119 PANTHER PTHR40943 1 119 5.0E-50 T 22-04-2016 PP4_RS09010 2db6cab123cea4bb81f4dd8240d80c16 405 Gene3D G3DSA:2.30.40.10 16 57 1.6E-14 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PP4_RS09010 2db6cab123cea4bb81f4dd8240d80c16 405 PANTHER PTHR32027 3 381 5.4E-113 T 22-04-2016 PP4_RS09010 2db6cab123cea4bb81f4dd8240d80c16 405 SUPERFAMILY SSF51338 1 71 1.42E-13 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PP4_RS09010 2db6cab123cea4bb81f4dd8240d80c16 405 PANTHER PTHR32027:SF9 3 381 5.4E-113 T 22-04-2016 PP4_RS09010 2db6cab123cea4bb81f4dd8240d80c16 405 Pfam PF07969 Amidohydrolase family 40 378 1.0E-31 T 22-04-2016 IPR013108 Amidohydrolase 3 PP4_RS09010 2db6cab123cea4bb81f4dd8240d80c16 405 SUPERFAMILY SSF51556 52 356 6.22E-80 T 22-04-2016 IPR032466 Metal-dependent hydrolase PP4_RS09010 2db6cab123cea4bb81f4dd8240d80c16 405 Gene3D G3DSA:3.20.20.140 58 348 5.1E-98 T 22-04-2016 PP4_RS00730 9e32a89a10ef81b1c29314141bcd7ab2 497 PANTHER PTHR21432 1 494 1.3E-275 T 22-04-2016 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 PP4_RS00730 9e32a89a10ef81b1c29314141bcd7ab2 497 SUPERFAMILY SSF100950 225 494 1.47E-84 T 22-04-2016 PP4_RS00730 9e32a89a10ef81b1c29314141bcd7ab2 497 Pfam PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain 322 463 3.9E-41 T 22-04-2016 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain PP4_RS00730 9e32a89a10ef81b1c29314141bcd7ab2 497 PANTHER PTHR21432:SF10 1 494 1.3E-275 T 22-04-2016 PP4_RS00730 9e32a89a10ef81b1c29314141bcd7ab2 497 SUPERFAMILY SSF100950 3 222 3.08E-76 T 22-04-2016 PP4_RS00730 9e32a89a10ef81b1c29314141bcd7ab2 497 TIGRFAM TIGR03458 YgfH_subfam: succinate CoA transferase 12 494 1.2E-233 T 22-04-2016 IPR017821 Succinate CoA transferase GO:0006084|GO:0016740 PP4_RS00730 9e32a89a10ef81b1c29314141bcd7ab2 497 Gene3D G3DSA:3.40.1080.10 11 221 7.6E-44 T 22-04-2016 PP4_RS00730 9e32a89a10ef81b1c29314141bcd7ab2 497 Pfam PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain 11 215 3.2E-31 T 22-04-2016 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 PP4_RS00730 9e32a89a10ef81b1c29314141bcd7ab2 497 Gene3D G3DSA:3.40.810.20 225 490 7.2E-82 T 22-04-2016 PP4_RS17660 d70ed738ce298ae132e0918256e0d7b6 427 SMART SM00382 113 334 2.7E-10 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS17660 d70ed738ce298ae132e0918256e0d7b6 427 SUPERFAMILY SSF52540 65 405 1.53E-71 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS17660 d70ed738ce298ae132e0918256e0d7b6 427 SMART SM01086 318 413 3.0E-32 T 22-04-2016 IPR019489 Clp ATPase, C-terminal PP4_RS17660 d70ed738ce298ae132e0918256e0d7b6 427 Gene3D G3DSA:1.10.8.60 317 417 3.0E-38 T 22-04-2016 PP4_RS17660 d70ed738ce298ae132e0918256e0d7b6 427 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 12 413 7.2E-208 T 22-04-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 PP4_RS17660 d70ed738ce298ae132e0918256e0d7b6 427 PANTHER PTHR11262 1 415 4.1E-250 T 22-04-2016 PP4_RS17660 d70ed738ce298ae132e0918256e0d7b6 427 Pfam PF07724 AAA domain (Cdc48 subfamily) 114 311 8.5E-50 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 PP4_RS17660 d70ed738ce298ae132e0918256e0d7b6 427 Gene3D G3DSA:3.40.50.300 295 311 6.1E-52 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS17660 d70ed738ce298ae132e0918256e0d7b6 427 Gene3D G3DSA:3.40.50.300 67 255 6.1E-52 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS17660 d70ed738ce298ae132e0918256e0d7b6 427 SUPERFAMILY SSF57716 14 49 1.15E-11 T 22-04-2016 PP4_RS17660 d70ed738ce298ae132e0918256e0d7b6 427 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 318 396 8.8E-16 T 22-04-2016 IPR019489 Clp ATPase, C-terminal PP4_RS17660 d70ed738ce298ae132e0918256e0d7b6 427 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 4 416 53.794 T 22-04-2016 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 PP4_RS17660 d70ed738ce298ae132e0918256e0d7b6 427 SMART SM00994 13 52 2.5E-24 T 22-04-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 PP4_RS17660 d70ed738ce298ae132e0918256e0d7b6 427 Pfam PF06689 ClpX C4-type zinc finger 14 51 1.0E-20 T 22-04-2016 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 PP4_RS14885 17fb38273b75daef2aa1e0d216e72f44 300 PANTHER PTHR30126:SF15 2 291 2.1E-101 T 22-04-2016 PP4_RS14885 17fb38273b75daef2aa1e0d216e72f44 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.2E-17 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS14885 17fb38273b75daef2aa1e0d216e72f44 300 Gene3D G3DSA:3.40.190.10 177 260 9.4E-15 T 22-04-2016 PP4_RS14885 17fb38273b75daef2aa1e0d216e72f44 300 Pfam PF03466 LysR substrate binding domain 88 292 1.7E-38 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS14885 17fb38273b75daef2aa1e0d216e72f44 300 Gene3D G3DSA:3.40.190.10 92 176 1.9E-17 T 22-04-2016 PP4_RS14885 17fb38273b75daef2aa1e0d216e72f44 300 Gene3D G3DSA:1.10.10.10 3 87 6.6E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS14885 17fb38273b75daef2aa1e0d216e72f44 300 PANTHER PTHR30126 2 291 2.1E-101 T 22-04-2016 PP4_RS14885 17fb38273b75daef2aa1e0d216e72f44 300 SUPERFAMILY SSF53850 88 294 9.41E-38 T 22-04-2016 PP4_RS14885 17fb38273b75daef2aa1e0d216e72f44 300 SUPERFAMILY SSF46785 2 112 3.58E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS21495 767176855841a96a6b8e2414fa811ba8 400 PANTHER PTHR30012:SF6 2 399 5.8E-126 T 22-04-2016 PP4_RS21495 767176855841a96a6b8e2414fa811ba8 400 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 160 188 - T 22-04-2016 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 PP4_RS21495 767176855841a96a6b8e2414fa811ba8 400 TIGRFAM TIGR02120 GspF: type II secretion system protein F 4 397 3.9E-154 T 22-04-2016 IPR011850 General secretion pathway protein F GO:0008565|GO:0015627|GO:0015628 PP4_RS21495 767176855841a96a6b8e2414fa811ba8 400 Pfam PF00482 Type II secretion system (T2SS), protein F 66 188 6.1E-27 T 22-04-2016 IPR018076 Type II secretion system F domain PP4_RS21495 767176855841a96a6b8e2414fa811ba8 400 Pfam PF00482 Type II secretion system (T2SS), protein F 269 390 1.1E-29 T 22-04-2016 IPR018076 Type II secretion system F domain PP4_RS21495 767176855841a96a6b8e2414fa811ba8 400 PRINTS PR00812 Bacterial general secretion pathway protein F signature 160 188 1.2E-32 T 22-04-2016 IPR003004 GspF/PilC family PP4_RS21495 767176855841a96a6b8e2414fa811ba8 400 PRINTS PR00812 Bacterial general secretion pathway protein F signature 61 73 1.2E-32 T 22-04-2016 IPR003004 GspF/PilC family PP4_RS21495 767176855841a96a6b8e2414fa811ba8 400 PRINTS PR00812 Bacterial general secretion pathway protein F signature 363 377 1.2E-32 T 22-04-2016 IPR003004 GspF/PilC family PP4_RS21495 767176855841a96a6b8e2414fa811ba8 400 PRINTS PR00812 Bacterial general secretion pathway protein F signature 379 398 1.2E-32 T 22-04-2016 IPR003004 GspF/PilC family PP4_RS21495 767176855841a96a6b8e2414fa811ba8 400 PANTHER PTHR30012 2 399 5.8E-126 T 22-04-2016 PP4_RS26520 f6b26de70da2d41a80d6fee6144666be 104 Pfam PF09498 Protein of unknown function (DUF2388) 29 98 2.6E-32 T 22-04-2016 IPR012661 Conserved hypothetical protein CHP02448 PP4_RS26520 f6b26de70da2d41a80d6fee6144666be 104 TIGRFAM TIGR02448 TIGR02448: conserverd hypothetical protein 1 99 4.3E-38 T 22-04-2016 IPR012661 Conserved hypothetical protein CHP02448 PP4_RS21045 f2a681cbd1dd48d0225b3282130f4995 245 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 4 226 2.7E-103 T 22-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 PP4_RS21045 f2a681cbd1dd48d0225b3282130f4995 245 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 6 17 - T 22-04-2016 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 PP4_RS21045 f2a681cbd1dd48d0225b3282130f4995 245 Pfam PF00318 Ribosomal protein S2 9 224 5.7E-93 T 22-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS21045 f2a681cbd1dd48d0225b3282130f4995 245 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 225 41.097 T 22-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 PP4_RS21045 f2a681cbd1dd48d0225b3282130f4995 245 PRINTS PR00395 Ribosomal protein S2 signature 87 104 2.5E-37 T 22-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS21045 f2a681cbd1dd48d0225b3282130f4995 245 PRINTS PR00395 Ribosomal protein S2 signature 6 24 2.5E-37 T 22-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS21045 f2a681cbd1dd48d0225b3282130f4995 245 PRINTS PR00395 Ribosomal protein S2 signature 158 175 2.5E-37 T 22-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS21045 f2a681cbd1dd48d0225b3282130f4995 245 PRINTS PR00395 Ribosomal protein S2 signature 196 210 2.5E-37 T 22-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS21045 f2a681cbd1dd48d0225b3282130f4995 245 PRINTS PR00395 Ribosomal protein S2 signature 175 186 2.5E-37 T 22-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS21045 f2a681cbd1dd48d0225b3282130f4995 245 PRINTS PR00395 Ribosomal protein S2 signature 37 46 2.5E-37 T 22-04-2016 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS21045 f2a681cbd1dd48d0225b3282130f4995 245 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 158 182 - T 22-04-2016 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 PP4_RS21045 f2a681cbd1dd48d0225b3282130f4995 245 PANTHER PTHR12534 1 245 2.6E-114 T 22-04-2016 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 PP4_RS21045 f2a681cbd1dd48d0225b3282130f4995 245 SUPERFAMILY SSF52313 6 232 3.66E-94 T 22-04-2016 IPR023591 Ribosomal protein S2, flavodoxin-like domain PP4_RS21045 f2a681cbd1dd48d0225b3282130f4995 245 Gene3D G3DSA:1.10.287.610 100 152 1.9E-25 T 22-04-2016 PP4_RS21045 f2a681cbd1dd48d0225b3282130f4995 245 Gene3D G3DSA:3.40.50.10490 158 235 1.1E-63 T 22-04-2016 PP4_RS21045 f2a681cbd1dd48d0225b3282130f4995 245 Gene3D G3DSA:3.40.50.10490 23 99 1.1E-63 T 22-04-2016 PP4_RS11490 3e16c0f1d5fd1ad80eee4cbb4009df87 301 Gene3D G3DSA:1.10.10.10 3 81 4.4E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS11490 3e16c0f1d5fd1ad80eee4cbb4009df87 301 Pfam PF03466 LysR substrate binding domain 88 293 8.5E-39 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS11490 3e16c0f1d5fd1ad80eee4cbb4009df87 301 PANTHER PTHR30537 1 292 3.8E-103 T 22-04-2016 PP4_RS11490 3e16c0f1d5fd1ad80eee4cbb4009df87 301 SUPERFAMILY SSF53850 89 299 1.32E-37 T 22-04-2016 PP4_RS11490 3e16c0f1d5fd1ad80eee4cbb4009df87 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 9.6E-17 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS11490 3e16c0f1d5fd1ad80eee4cbb4009df87 301 SUPERFAMILY SSF46785 4 87 1.57E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS11490 3e16c0f1d5fd1ad80eee4cbb4009df87 301 PANTHER PTHR30537:SF5 1 292 3.8E-103 T 22-04-2016 PP4_RS11490 3e16c0f1d5fd1ad80eee4cbb4009df87 301 Gene3D G3DSA:3.40.190.10 177 261 2.7E-22 T 22-04-2016 PP4_RS11490 3e16c0f1d5fd1ad80eee4cbb4009df87 301 Gene3D G3DSA:3.40.190.10 82 176 3.2E-8 T 22-04-2016 PP4_RS26295 089fea2dcadf2b12e4f5f7c3d6cad3f9 465 Gene3D G3DSA:3.30.43.10 2 95 1.3E-31 T 22-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 PP4_RS26295 089fea2dcadf2b12e4f5f7c3d6cad3f9 465 Gene3D G3DSA:1.10.45.10 422 461 9.0E-15 T 22-04-2016 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 PP4_RS26295 089fea2dcadf2b12e4f5f7c3d6cad3f9 465 Gene3D G3DSA:3.30.465.10 96 217 2.5E-38 T 22-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 PP4_RS26295 089fea2dcadf2b12e4f5f7c3d6cad3f9 465 Pfam PF02913 FAD linked oxidases, C-terminal domain 217 461 6.0E-62 T 22-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 PP4_RS26295 089fea2dcadf2b12e4f5f7c3d6cad3f9 465 SUPERFAMILY SSF56176 4 217 5.14E-70 T 22-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 PP4_RS26295 089fea2dcadf2b12e4f5f7c3d6cad3f9 465 SUPERFAMILY SSF55103 222 463 5.23E-60 T 22-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 PP4_RS26295 089fea2dcadf2b12e4f5f7c3d6cad3f9 465 PANTHER PTHR11748:SF76 1 462 1.6E-231 T 22-04-2016 PP4_RS26295 089fea2dcadf2b12e4f5f7c3d6cad3f9 465 Pfam PF01565 FAD binding domain 41 179 3.7E-38 T 22-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 PP4_RS26295 089fea2dcadf2b12e4f5f7c3d6cad3f9 465 PANTHER PTHR11748 1 462 1.6E-231 T 22-04-2016 PP4_RS00265 8839e541a62fd196de3f38163fe8524a 183 Pfam PF03352 Methyladenine glycosylase 6 177 6.7E-71 T 22-04-2016 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 PP4_RS00265 8839e541a62fd196de3f38163fe8524a 183 SUPERFAMILY SSF48150 1 180 2.16E-74 T 22-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 PP4_RS00265 8839e541a62fd196de3f38163fe8524a 183 TIGRFAM TIGR00624 tag: DNA-3-methyladenine glycosylase I 3 178 3.8E-85 T 22-04-2016 IPR004597 DNA-3-methyladenine glycosylase I GO:0006284|GO:0008725 PP4_RS00265 8839e541a62fd196de3f38163fe8524a 183 PANTHER PTHR30037 1 181 1.1E-104 T 22-04-2016 PP4_RS00265 8839e541a62fd196de3f38163fe8524a 183 PANTHER PTHR30037:SF4 1 181 1.1E-104 T 22-04-2016 PP4_RS00265 8839e541a62fd196de3f38163fe8524a 183 Gene3D G3DSA:1.10.340.30 2 178 7.9E-75 T 22-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 PP4_RS05890 de1e629e61fd7a140e6d4f47eaf797fa 174 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 4 150 4.6E-63 T 22-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 PP4_RS05890 de1e629e61fd7a140e6d4f47eaf797fa 174 PANTHER PTHR30194 1 169 1.4E-66 T 22-04-2016 PP4_RS05890 de1e629e61fd7a140e6d4f47eaf797fa 174 SUPERFAMILY SSF53098 3 156 6.83E-51 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PP4_RS05890 de1e629e61fd7a140e6d4f47eaf797fa 174 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 113 147 - T 22-04-2016 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 PP4_RS05890 de1e629e61fd7a140e6d4f47eaf797fa 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 5 18 9.2E-38 T 22-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 PP4_RS05890 de1e629e61fd7a140e6d4f47eaf797fa 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 61 77 9.2E-38 T 22-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 PP4_RS05890 de1e629e61fd7a140e6d4f47eaf797fa 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 107 126 9.2E-38 T 22-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 PP4_RS05890 de1e629e61fd7a140e6d4f47eaf797fa 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 138 150 9.2E-38 T 22-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 PP4_RS05890 de1e629e61fd7a140e6d4f47eaf797fa 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 83 99 9.2E-38 T 22-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 PP4_RS05890 de1e629e61fd7a140e6d4f47eaf797fa 174 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 4 154 2.2E-59 T 22-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 PP4_RS05890 de1e629e61fd7a140e6d4f47eaf797fa 174 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 2 153 45.983 T 22-04-2016 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 PP4_RS05890 de1e629e61fd7a140e6d4f47eaf797fa 174 Gene3D G3DSA:3.30.420.10 3 156 9.7E-61 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PP4_RS10740 97949e0107b4e68577e33cee9aa0b5f5 467 PANTHER PTHR11785:SF336 9 463 2.1E-155 T 22-04-2016 PP4_RS10740 97949e0107b4e68577e33cee9aa0b5f5 467 PIRSF PIRSF006060 3 464 2.1E-59 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS10740 97949e0107b4e68577e33cee9aa0b5f5 467 Pfam PF00324 Amino acid permease 30 457 8.8E-92 T 22-04-2016 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 PP4_RS10740 97949e0107b4e68577e33cee9aa0b5f5 467 PANTHER PTHR11785 9 463 2.1E-155 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS12165 7c80f0b93e0c2175e544d9be8f373d10 191 Gene3D G3DSA:3.90.550.10 7 189 2.7E-47 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS12165 7c80f0b93e0c2175e544d9be8f373d10 191 SUPERFAMILY SSF53448 7 187 4.63E-33 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS12165 7c80f0b93e0c2175e544d9be8f373d10 191 Hamap MF_00316 Molybdenum cofactor guanylyltransferase [mobA]. 6 191 23.375 T 22-04-2016 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 MetaCyc: PWY-5964|MetaCyc: PWY-7639 PP4_RS12165 7c80f0b93e0c2175e544d9be8f373d10 191 PANTHER PTHR19136 6 190 1.7E-40 T 22-04-2016 PP4_RS12165 7c80f0b93e0c2175e544d9be8f373d10 191 TIGRFAM TIGR02665 molyb_mobA: molybdenum cofactor guanylyltransferase 8 190 1.0E-61 T 22-04-2016 IPR013482 Molybdenum cofactor guanylyltransferase GO:0003824|GO:0006777 MetaCyc: PWY-5964|MetaCyc: PWY-7639 PP4_RS12165 7c80f0b93e0c2175e544d9be8f373d10 191 PANTHER PTHR19136:SF81 6 190 1.7E-40 T 22-04-2016 PP4_RS12165 7c80f0b93e0c2175e544d9be8f373d10 191 Pfam PF12804 MobA-like NTP transferase domain 11 162 1.2E-31 T 22-04-2016 IPR025877 MobA-like NTP transferase PP4_RS18235 93548027e051258597904045aab4f903 808 Gene3D G3DSA:2.170.130.10 120 249 1.1E-26 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS18235 93548027e051258597904045aab4f903 808 Pfam PF07660 Secretin and TonB N terminus short domain 71 119 1.7E-8 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS18235 93548027e051258597904045aab4f903 808 PANTHER PTHR32552 115 808 1.0E-202 T 22-04-2016 PP4_RS18235 93548027e051258597904045aab4f903 808 Gene3D G3DSA:2.40.170.20 250 806 2.0E-66 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS18235 93548027e051258597904045aab4f903 808 Pfam PF00593 TonB dependent receptor 564 805 9.0E-19 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS18235 93548027e051258597904045aab4f903 808 PANTHER PTHR32552:SF30 115 808 1.0E-202 T 22-04-2016 PP4_RS18235 93548027e051258597904045aab4f903 808 SUPERFAMILY SSF56935 122 806 4.88E-88 T 22-04-2016 PP4_RS18235 93548027e051258597904045aab4f903 808 SMART SM00965 69 120 2.2E-10 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS18235 93548027e051258597904045aab4f903 808 Pfam PF07715 TonB-dependent Receptor Plug Domain 145 247 8.3E-18 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS18235 93548027e051258597904045aab4f903 808 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 146 806 1.9E-80 T 22-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 PP4_RS26800 c65f07d7731c0e87fa1eb354816ec358 209 Pfam PF00857 Isochorismatase family 15 166 3.1E-22 T 22-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PP4_RS26800 c65f07d7731c0e87fa1eb354816ec358 209 PANTHER PTHR14119:SF11 1 203 2.6E-118 T 22-04-2016 PP4_RS26800 c65f07d7731c0e87fa1eb354816ec358 209 PANTHER PTHR14119 1 203 2.6E-118 T 22-04-2016 PP4_RS26800 c65f07d7731c0e87fa1eb354816ec358 209 Gene3D G3DSA:3.40.50.850 6 203 1.2E-48 T 22-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PP4_RS26800 c65f07d7731c0e87fa1eb354816ec358 209 SUPERFAMILY SSF52499 5 202 4.84E-53 T 22-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PP4_RS18145 a245531e23f838c9b6543ee24d594621 287 PANTHER PTHR30126:SF17 1 283 1.6E-143 T 22-04-2016 PP4_RS18145 a245531e23f838c9b6543ee24d594621 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.1E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS18145 a245531e23f838c9b6543ee24d594621 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.1E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS18145 a245531e23f838c9b6543ee24d594621 287 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.1E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS18145 a245531e23f838c9b6543ee24d594621 287 Gene3D G3DSA:3.40.190.10 170 256 4.4E-23 T 22-04-2016 PP4_RS18145 a245531e23f838c9b6543ee24d594621 287 Pfam PF03466 LysR substrate binding domain 87 283 6.8E-37 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS18145 a245531e23f838c9b6543ee24d594621 287 PANTHER PTHR30126 1 283 1.6E-143 T 22-04-2016 PP4_RS18145 a245531e23f838c9b6543ee24d594621 287 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 61 4.2E-22 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS18145 a245531e23f838c9b6543ee24d594621 287 Gene3D G3DSA:3.40.190.10 105 169 3.5E-12 T 22-04-2016 PP4_RS18145 a245531e23f838c9b6543ee24d594621 287 SUPERFAMILY SSF53850 88 284 3.95E-31 T 22-04-2016 PP4_RS18145 a245531e23f838c9b6543ee24d594621 287 SUPERFAMILY SSF46785 1 84 2.37E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS18145 a245531e23f838c9b6543ee24d594621 287 Gene3D G3DSA:1.10.10.10 1 81 3.8E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS27095 e5f3723c7199447ed770d595fe435db8 331 Pfam PF02371 Transposase IS116/IS110/IS902 family 198 283 7.8E-19 T 22-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PP4_RS27095 e5f3723c7199447ed770d595fe435db8 331 Pfam PF01548 Transposase 5 150 4.4E-22 T 22-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 PP4_RS27095 e5f3723c7199447ed770d595fe435db8 331 PANTHER PTHR33055 1 318 6.6E-45 T 22-04-2016 PP4_RS27095 e5f3723c7199447ed770d595fe435db8 331 PANTHER PTHR33055:SF3 1 318 6.6E-45 T 22-04-2016 PP4_RS05995 e5f3723c7199447ed770d595fe435db8 331 Pfam PF02371 Transposase IS116/IS110/IS902 family 198 283 7.8E-19 T 22-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PP4_RS05995 e5f3723c7199447ed770d595fe435db8 331 Pfam PF01548 Transposase 5 150 4.4E-22 T 22-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 PP4_RS05995 e5f3723c7199447ed770d595fe435db8 331 PANTHER PTHR33055 1 318 6.6E-45 T 22-04-2016 PP4_RS05995 e5f3723c7199447ed770d595fe435db8 331 PANTHER PTHR33055:SF3 1 318 6.6E-45 T 22-04-2016 PP4_RS16160 e5f3723c7199447ed770d595fe435db8 331 Pfam PF02371 Transposase IS116/IS110/IS902 family 198 283 7.8E-19 T 22-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PP4_RS16160 e5f3723c7199447ed770d595fe435db8 331 Pfam PF01548 Transposase 5 150 4.4E-22 T 22-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 PP4_RS16160 e5f3723c7199447ed770d595fe435db8 331 PANTHER PTHR33055 1 318 6.6E-45 T 22-04-2016 PP4_RS16160 e5f3723c7199447ed770d595fe435db8 331 PANTHER PTHR33055:SF3 1 318 6.6E-45 T 22-04-2016 PP4_RS03470 e5f3723c7199447ed770d595fe435db8 331 Pfam PF02371 Transposase IS116/IS110/IS902 family 198 283 7.8E-19 T 22-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PP4_RS03470 e5f3723c7199447ed770d595fe435db8 331 Pfam PF01548 Transposase 5 150 4.4E-22 T 22-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 PP4_RS03470 e5f3723c7199447ed770d595fe435db8 331 PANTHER PTHR33055 1 318 6.6E-45 T 22-04-2016 PP4_RS03470 e5f3723c7199447ed770d595fe435db8 331 PANTHER PTHR33055:SF3 1 318 6.6E-45 T 22-04-2016 PP4_RS08420 e5f3723c7199447ed770d595fe435db8 331 Pfam PF02371 Transposase IS116/IS110/IS902 family 198 283 7.8E-19 T 22-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PP4_RS08420 e5f3723c7199447ed770d595fe435db8 331 Pfam PF01548 Transposase 5 150 4.4E-22 T 22-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 PP4_RS08420 e5f3723c7199447ed770d595fe435db8 331 PANTHER PTHR33055 1 318 6.6E-45 T 22-04-2016 PP4_RS08420 e5f3723c7199447ed770d595fe435db8 331 PANTHER PTHR33055:SF3 1 318 6.6E-45 T 22-04-2016 PP4_RS03565 e5f3723c7199447ed770d595fe435db8 331 Pfam PF02371 Transposase IS116/IS110/IS902 family 198 283 7.8E-19 T 22-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PP4_RS03565 e5f3723c7199447ed770d595fe435db8 331 Pfam PF01548 Transposase 5 150 4.4E-22 T 22-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 PP4_RS03565 e5f3723c7199447ed770d595fe435db8 331 PANTHER PTHR33055 1 318 6.6E-45 T 22-04-2016 PP4_RS03565 e5f3723c7199447ed770d595fe435db8 331 PANTHER PTHR33055:SF3 1 318 6.6E-45 T 22-04-2016 PP4_RS14105 e5f3723c7199447ed770d595fe435db8 331 Pfam PF02371 Transposase IS116/IS110/IS902 family 198 283 7.8E-19 T 22-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PP4_RS14105 e5f3723c7199447ed770d595fe435db8 331 Pfam PF01548 Transposase 5 150 4.4E-22 T 22-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 PP4_RS14105 e5f3723c7199447ed770d595fe435db8 331 PANTHER PTHR33055 1 318 6.6E-45 T 22-04-2016 PP4_RS14105 e5f3723c7199447ed770d595fe435db8 331 PANTHER PTHR33055:SF3 1 318 6.6E-45 T 22-04-2016 PP4_RS06095 e5f3723c7199447ed770d595fe435db8 331 Pfam PF02371 Transposase IS116/IS110/IS902 family 198 283 7.8E-19 T 22-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PP4_RS06095 e5f3723c7199447ed770d595fe435db8 331 Pfam PF01548 Transposase 5 150 4.4E-22 T 22-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 PP4_RS06095 e5f3723c7199447ed770d595fe435db8 331 PANTHER PTHR33055 1 318 6.6E-45 T 22-04-2016 PP4_RS06095 e5f3723c7199447ed770d595fe435db8 331 PANTHER PTHR33055:SF3 1 318 6.6E-45 T 22-04-2016 PP4_RS25285 c00f961f87be099656368826dc48d268 475 SUPERFAMILY SSF103473 6 198 5.75E-61 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS25285 c00f961f87be099656368826dc48d268 475 SUPERFAMILY SSF103473 249 469 5.75E-61 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS25285 c00f961f87be099656368826dc48d268 475 PRINTS PR01036 Tetracycline resistance protein TetB signature 18 42 9.4E-7 T 22-04-2016 PP4_RS25285 c00f961f87be099656368826dc48d268 475 PRINTS PR01036 Tetracycline resistance protein TetB signature 139 163 9.4E-7 T 22-04-2016 PP4_RS25285 c00f961f87be099656368826dc48d268 475 PRINTS PR01036 Tetracycline resistance protein TetB signature 109 129 9.4E-7 T 22-04-2016 PP4_RS25285 c00f961f87be099656368826dc48d268 475 PRINTS PR01036 Tetracycline resistance protein TetB signature 401 420 9.4E-7 T 22-04-2016 PP4_RS25285 c00f961f87be099656368826dc48d268 475 PANTHER PTHR23501:SF1 12 475 1.1E-235 T 22-04-2016 PP4_RS25285 c00f961f87be099656368826dc48d268 475 Gene3D G3DSA:1.20.1250.20 261 471 9.6E-20 T 22-04-2016 PP4_RS25285 c00f961f87be099656368826dc48d268 475 Gene3D G3DSA:1.20.1250.20 13 193 1.5E-28 T 22-04-2016 PP4_RS25285 c00f961f87be099656368826dc48d268 475 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 18 418 3.0E-75 T 22-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 PP4_RS25285 c00f961f87be099656368826dc48d268 475 Pfam PF07690 Major Facilitator Superfamily 19 410 8.9E-43 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS25285 c00f961f87be099656368826dc48d268 475 PANTHER PTHR23501 12 475 1.1E-235 T 22-04-2016 PP4_RS23955 8afd413ced869f1c5bad8ae0795f759b 440 PANTHER PTHR24031 1 369 5.2E-174 T 22-04-2016 PP4_RS23955 8afd413ced869f1c5bad8ae0795f759b 440 PANTHER PTHR24031:SF0 1 369 5.2E-174 T 22-04-2016 PP4_RS23955 8afd413ced869f1c5bad8ae0795f759b 440 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 153 161 - T 22-04-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site PP4_RS23955 8afd413ced869f1c5bad8ae0795f759b 440 SMART SM00487 20 222 8.3E-60 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PP4_RS23955 8afd413ced869f1c5bad8ae0795f759b 440 Pfam PF00270 DEAD/DEAH box helicase 25 193 1.5E-49 T 22-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 PP4_RS23955 8afd413ced869f1c5bad8ae0795f759b 440 SUPERFAMILY SSF52540 74 356 9.38E-72 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23955 8afd413ced869f1c5bad8ae0795f759b 440 Pfam PF00271 Helicase conserved C-terminal domain 233 339 3.2E-25 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS23955 8afd413ced869f1c5bad8ae0795f759b 440 Gene3D G3DSA:3.40.50.300 1 211 1.2E-78 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23955 8afd413ced869f1c5bad8ae0795f759b 440 Gene3D G3DSA:3.40.50.300 212 365 1.8E-49 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23955 8afd413ced869f1c5bad8ae0795f759b 440 SMART SM00490 258 339 1.2E-29 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS08640 bce55076bb52578d7aa5ddff17e7170e 560 Gene3D G3DSA:3.30.300.30 451 549 9.9E-32 T 22-04-2016 PP4_RS08640 bce55076bb52578d7aa5ddff17e7170e 560 Pfam PF13193 AMP-binding enzyme C-terminal domain 465 540 5.0E-17 T 22-04-2016 IPR025110 AMP-binding enzyme C-terminal domain PP4_RS08640 bce55076bb52578d7aa5ddff17e7170e 560 Gene3D G3DSA:3.40.50.980 221 366 5.2E-46 T 22-04-2016 PP4_RS08640 bce55076bb52578d7aa5ddff17e7170e 560 Gene3D G3DSA:2.30.38.10 374 447 9.2E-25 T 22-04-2016 PP4_RS08640 bce55076bb52578d7aa5ddff17e7170e 560 PANTHER PTHR24095 4 555 1.7E-187 T 22-04-2016 PP4_RS08640 bce55076bb52578d7aa5ddff17e7170e 560 Gene3D G3DSA:3.40.50.980 18 220 4.4E-38 T 22-04-2016 PP4_RS08640 bce55076bb52578d7aa5ddff17e7170e 560 SUPERFAMILY SSF56801 16 552 1.31E-154 T 22-04-2016 PP4_RS08640 bce55076bb52578d7aa5ddff17e7170e 560 Pfam PF00501 AMP-binding enzyme 24 456 2.6E-98 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PP4_RS08640 bce55076bb52578d7aa5ddff17e7170e 560 ProSitePatterns PS00455 Putative AMP-binding domain signature. 206 217 - T 22-04-2016 IPR020845 AMP-binding, conserved site PP4_RS20450 6c9b1c16af36890881ab40bad32620e8 112 SUPERFAMILY SSF47413 56 105 1.31E-9 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS20450 6c9b1c16af36890881ab40bad32620e8 112 Pfam PF01381 Helix-turn-helix 57 95 2.7E-9 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS20450 6c9b1c16af36890881ab40bad32620e8 112 Gene3D G3DSA:3.40.1620.10 4 27 2.4E-4 T 22-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM PP4_RS20450 6c9b1c16af36890881ab40bad32620e8 112 SMART SM00530 55 110 5.9E-6 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS20450 6c9b1c16af36890881ab40bad32620e8 112 Gene3D G3DSA:1.10.260.40 56 105 7.8E-11 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS12640 15785b05d37b457c8e18da20c6050ba3 180 Gene3D G3DSA:2.60.120.10 54 176 3.8E-17 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS12640 15785b05d37b457c8e18da20c6050ba3 180 Gene3D G3DSA:1.10.260.40 3 53 1.8E-22 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS12640 15785b05d37b457c8e18da20c6050ba3 180 SUPERFAMILY SSF51182 68 175 1.17E-21 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS12640 15785b05d37b457c8e18da20c6050ba3 180 SUPERFAMILY SSF47413 3 64 1.45E-18 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS12640 15785b05d37b457c8e18da20c6050ba3 180 Pfam PF07883 Cupin domain 109 174 4.1E-14 T 22-04-2016 IPR013096 Cupin 2, conserved barrel PP4_RS12640 15785b05d37b457c8e18da20c6050ba3 180 PANTHER PTHR10245 4 180 2.3E-33 T 22-04-2016 PP4_RS12640 15785b05d37b457c8e18da20c6050ba3 180 SMART SM00530 4 59 4.7E-19 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS12640 15785b05d37b457c8e18da20c6050ba3 180 Pfam PF01381 Helix-turn-helix 5 59 2.4E-18 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS22495 3dc0575db9becd55861bb1d5debd03c3 672 PANTHER PTHR10422:SF26 33 614 0.0 T 22-04-2016 PP4_RS22495 3dc0575db9becd55861bb1d5debd03c3 672 SUPERFAMILY SSF81442 43 557 1.15E-172 T 22-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS22495 3dc0575db9becd55861bb1d5debd03c3 672 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 56 504 5.3E-132 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS22495 3dc0575db9becd55861bb1d5debd03c3 672 Gene3D G3DSA:1.20.210.10 39 589 5.5E-183 T 22-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS22495 3dc0575db9becd55861bb1d5debd03c3 672 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 280 334 - T 22-04-2016 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS22495 3dc0575db9becd55861bb1d5debd03c3 672 PRINTS PR01165 Cytochrome c oxidase subunit I signature 227 246 1.5E-91 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS22495 3dc0575db9becd55861bb1d5debd03c3 672 PRINTS PR01165 Cytochrome c oxidase subunit I signature 198 216 1.5E-91 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS22495 3dc0575db9becd55861bb1d5debd03c3 672 PRINTS PR01165 Cytochrome c oxidase subunit I signature 124 148 1.5E-91 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS22495 3dc0575db9becd55861bb1d5debd03c3 672 PRINTS PR01165 Cytochrome c oxidase subunit I signature 278 299 1.5E-91 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS22495 3dc0575db9becd55861bb1d5debd03c3 672 PRINTS PR01165 Cytochrome c oxidase subunit I signature 348 369 1.5E-91 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS22495 3dc0575db9becd55861bb1d5debd03c3 672 PRINTS PR01165 Cytochrome c oxidase subunit I signature 461 482 1.5E-91 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS22495 3dc0575db9becd55861bb1d5debd03c3 672 PRINTS PR01165 Cytochrome c oxidase subunit I signature 324 339 1.5E-91 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS22495 3dc0575db9becd55861bb1d5debd03c3 672 PRINTS PR01165 Cytochrome c oxidase subunit I signature 411 430 1.5E-91 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS22495 3dc0575db9becd55861bb1d5debd03c3 672 PRINTS PR01165 Cytochrome c oxidase subunit I signature 47 72 1.5E-91 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS22495 3dc0575db9becd55861bb1d5debd03c3 672 PRINTS PR01165 Cytochrome c oxidase subunit I signature 383 401 1.5E-91 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS22495 3dc0575db9becd55861bb1d5debd03c3 672 PRINTS PR01165 Cytochrome c oxidase subunit I signature 97 120 1.5E-91 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS22495 3dc0575db9becd55861bb1d5debd03c3 672 PRINTS PR01165 Cytochrome c oxidase subunit I signature 166 178 1.5E-91 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS22495 3dc0575db9becd55861bb1d5debd03c3 672 TIGRFAM TIGR02843 CyoB: cytochrome o ubiquinol oxidase, subunit I 2 647 0.0 T 22-04-2016 IPR014207 Cytochrome o ubiquinol oxidase, subunit I GO:0016682|GO:0055114 MetaCyc: PWY-7544 PP4_RS22495 3dc0575db9becd55861bb1d5debd03c3 672 PANTHER PTHR10422 33 614 0.0 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS14155 066a0d82e3bf58cf7ad7f9397c57fd21 542 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 80 438 5.8E-68 T 22-04-2016 IPR000914 Solute-binding protein family 5 domain PP4_RS14155 066a0d82e3bf58cf7ad7f9397c57fd21 542 SUPERFAMILY SSF53850 32 539 2.35E-94 T 22-04-2016 PP4_RS14155 066a0d82e3bf58cf7ad7f9397c57fd21 542 Gene3D G3DSA:3.90.76.10 48 200 9.7E-34 T 22-04-2016 PP4_RS14155 066a0d82e3bf58cf7ad7f9397c57fd21 542 PIRSF PIRSF002741 4 540 8.3E-64 T 22-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 PP4_RS14155 066a0d82e3bf58cf7ad7f9397c57fd21 542 PANTHER PTHR30290 6 537 3.5E-85 T 22-04-2016 PP4_RS14155 066a0d82e3bf58cf7ad7f9397c57fd21 542 Gene3D G3DSA:3.40.190.10 201 308 1.7E-16 T 22-04-2016 PP4_RS14155 066a0d82e3bf58cf7ad7f9397c57fd21 542 Gene3D G3DSA:3.10.105.10 309 510 3.9E-36 T 22-04-2016 PP4_RS26565 3d2afce6af2da3582681785488ce572f 444 SUPERFAMILY SSF53092 3 176 1.26E-54 T 22-04-2016 IPR028980 Creatinase/Aminopeptidase P, N-terminal PP4_RS26565 3d2afce6af2da3582681785488ce572f 444 Gene3D G3DSA:3.90.230.10 181 438 6.2E-89 T 22-04-2016 IPR000994 Peptidase M24, structural domain PP4_RS26565 3d2afce6af2da3582681785488ce572f 444 SUPERFAMILY SSF55920 177 437 1.26E-86 T 22-04-2016 IPR000994 Peptidase M24, structural domain PP4_RS26565 3d2afce6af2da3582681785488ce572f 444 Gene3D G3DSA:3.40.350.10 4 180 2.3E-53 T 22-04-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal PP4_RS26565 3d2afce6af2da3582681785488ce572f 444 PANTHER PTHR10804 4 437 1.0E-164 T 22-04-2016 PP4_RS26565 3d2afce6af2da3582681785488ce572f 444 PANTHER PTHR10804:SF17 4 437 1.0E-164 T 22-04-2016 PP4_RS26565 3d2afce6af2da3582681785488ce572f 444 SMART SM01011 4 138 2.5E-66 T 22-04-2016 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 PP4_RS26565 3d2afce6af2da3582681785488ce572f 444 Pfam PF00557 Metallopeptidase family M24 184 414 5.5E-66 T 22-04-2016 IPR000994 Peptidase M24, structural domain PP4_RS26565 3d2afce6af2da3582681785488ce572f 444 Pfam PF05195 Aminopeptidase P, N-terminal domain 9 128 2.9E-36 T 22-04-2016 IPR007865 Aminopeptidase P, N-terminal GO:0004177|GO:0030145 PP4_RS10395 719cac5c4758653a9029bedfee766b24 105 TIGRFAM TIGR02448 TIGR02448: conserverd hypothetical protein 1 98 5.2E-38 T 22-04-2016 IPR012661 Conserved hypothetical protein CHP02448 PP4_RS10395 719cac5c4758653a9029bedfee766b24 105 Pfam PF09498 Protein of unknown function (DUF2388) 28 97 1.8E-28 T 22-04-2016 IPR012661 Conserved hypothetical protein CHP02448 PP4_RS19570 6024a3d88b55564d95387e2e50d14e49 61 SUPERFAMILY SSF158997 1 56 1.83E-20 T 22-04-2016 PP4_RS19570 6024a3d88b55564d95387e2e50d14e49 61 PANTHER PTHR33505 1 58 1.2E-26 T 22-04-2016 PP4_RS19570 6024a3d88b55564d95387e2e50d14e49 61 Gene3D G3DSA:2.20.25.10 8 58 1.8E-25 T 22-04-2016 PP4_RS19570 6024a3d88b55564d95387e2e50d14e49 61 Pfam PF03966 Trm112p-like protein 2 41 9.9E-10 T 22-04-2016 IPR005651 Uncharacterised protein family UPF0434/Trm112 PP4_RS19570 6024a3d88b55564d95387e2e50d14e49 61 Hamap MF_01187 UPF0434 protein YcaR [ycaR]. 1 54 27.205 T 22-04-2016 IPR005651 Uncharacterised protein family UPF0434/Trm112 PP4_RS13555 dee5d42d362503f502838f92ce623204 383 ProSitePatterns PS00737 Thiolases signature 2. 329 345 - T 22-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 PP4_RS13555 dee5d42d362503f502838f92ce623204 383 Pfam PF00108 Thiolase, N-terminal domain 5 252 1.9E-48 T 22-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 PP4_RS13555 dee5d42d362503f502838f92ce623204 383 SUPERFAMILY SSF53901 261 382 5.91E-42 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS13555 dee5d42d362503f502838f92ce623204 383 PIRSF PIRSF000429 1 383 9.8E-106 T 22-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 PP4_RS13555 dee5d42d362503f502838f92ce623204 383 SUPERFAMILY SSF53901 4 260 2.45E-60 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS13555 dee5d42d362503f502838f92ce623204 383 PANTHER PTHR18919:SF71 1 383 9.2E-176 T 22-04-2016 PP4_RS13555 dee5d42d362503f502838f92ce623204 383 Gene3D G3DSA:3.40.47.10 267 382 1.3E-56 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS13555 dee5d42d362503f502838f92ce623204 383 Gene3D G3DSA:3.40.47.10 156 193 1.3E-56 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS13555 dee5d42d362503f502838f92ce623204 383 Gene3D G3DSA:3.40.47.10 194 266 5.4E-51 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS13555 dee5d42d362503f502838f92ce623204 383 Gene3D G3DSA:3.40.47.10 4 124 5.4E-51 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS13555 dee5d42d362503f502838f92ce623204 383 Pfam PF02803 Thiolase, C-terminal domain 261 382 1.7E-43 T 22-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 PP4_RS13555 dee5d42d362503f502838f92ce623204 383 PANTHER PTHR18919 1 383 9.2E-176 T 22-04-2016 PP4_RS13555 dee5d42d362503f502838f92ce623204 383 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 381 1.1E-114 T 22-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 PP4_RS02495 9af64cb974e2e48d28992f4c7c4e717c 397 PANTHER PTHR23115:SF151 1 396 1.3E-252 T 22-04-2016 PP4_RS02495 9af64cb974e2e48d28992f4c7c4e717c 397 SUPERFAMILY SSF52540 11 222 1.57E-57 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS02495 9af64cb974e2e48d28992f4c7c4e717c 397 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 397 58.275 T 22-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 PP4_RS02495 9af64cb974e2e48d28992f4c7c4e717c 397 Pfam PF00009 Elongation factor Tu GTP binding domain 11 204 6.5E-56 T 22-04-2016 PP4_RS02495 9af64cb974e2e48d28992f4c7c4e717c 397 Gene3D G3DSA:2.40.30.10 303 396 7.3E-47 T 22-04-2016 PP4_RS02495 9af64cb974e2e48d28992f4c7c4e717c 397 PRINTS PR00315 GTP-binding elongation factor signature 131 140 1.6E-24 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS02495 9af64cb974e2e48d28992f4c7c4e717c 397 PRINTS PR00315 GTP-binding elongation factor signature 58 66 1.6E-24 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS02495 9af64cb974e2e48d28992f4c7c4e717c 397 PRINTS PR00315 GTP-binding elongation factor signature 94 105 1.6E-24 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS02495 9af64cb974e2e48d28992f4c7c4e717c 397 PRINTS PR00315 GTP-binding elongation factor signature 78 88 1.6E-24 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS02495 9af64cb974e2e48d28992f4c7c4e717c 397 PRINTS PR00315 GTP-binding elongation factor signature 14 27 1.6E-24 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS02495 9af64cb974e2e48d28992f4c7c4e717c 397 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 22-04-2016 IPR031157 Tr-type G domain, conserved site PP4_RS02495 9af64cb974e2e48d28992f4c7c4e717c 397 SUPERFAMILY SSF50447 208 304 9.43E-29 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain PP4_RS02495 9af64cb974e2e48d28992f4c7c4e717c 397 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 2 397 1.2E-219 T 22-04-2016 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 PP4_RS02495 9af64cb974e2e48d28992f4c7c4e717c 397 Pfam PF03143 Elongation factor Tu C-terminal domain 301 395 3.7E-34 T 22-04-2016 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal PP4_RS02495 9af64cb974e2e48d28992f4c7c4e717c 397 Gene3D G3DSA:2.40.30.10 215 301 1.1E-35 T 22-04-2016 PP4_RS02495 9af64cb974e2e48d28992f4c7c4e717c 397 Gene3D G3DSA:3.40.50.300 4 214 3.8E-65 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS02495 9af64cb974e2e48d28992f4c7c4e717c 397 SUPERFAMILY SSF50465 301 396 2.3E-35 T 22-04-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal PP4_RS02495 9af64cb974e2e48d28992f4c7c4e717c 397 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 147 1.1E-14 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 PP4_RS02495 9af64cb974e2e48d28992f4c7c4e717c 397 Pfam PF03144 Elongation factor Tu domain 2 228 296 2.2E-15 T 22-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 PP4_RS02495 9af64cb974e2e48d28992f4c7c4e717c 397 PANTHER PTHR23115 1 396 1.3E-252 T 22-04-2016 PP4_RS07210 d0ad9d7d570edde09bb85ab7fa9c64fe 150 PANTHER PTHR38786 6 147 7.0E-33 T 22-04-2016 PP4_RS07210 d0ad9d7d570edde09bb85ab7fa9c64fe 150 TIGRFAM TIGR02473 flagell_FliJ: flagellar export protein FliJ 8 145 9.6E-34 T 22-04-2016 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 PP4_RS07210 d0ad9d7d570edde09bb85ab7fa9c64fe 150 PIRSF PIRSF019404 5 149 2.9E-41 T 22-04-2016 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 PP4_RS07210 d0ad9d7d570edde09bb85ab7fa9c64fe 150 PRINTS PR01004 Flagellar FliJ protein signature 129 149 3.0E-6 T 22-04-2016 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 PP4_RS07210 d0ad9d7d570edde09bb85ab7fa9c64fe 150 PRINTS PR01004 Flagellar FliJ protein signature 7 29 3.0E-6 T 22-04-2016 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 PP4_RS07210 d0ad9d7d570edde09bb85ab7fa9c64fe 150 PRINTS PR01004 Flagellar FliJ protein signature 66 87 3.0E-6 T 22-04-2016 IPR018006 Flagellar FliJ, proteobacteria GO:0003774|GO:0006935|GO:0009288|GO:0016020|GO:0071973 PP4_RS07210 d0ad9d7d570edde09bb85ab7fa9c64fe 150 Pfam PF02050 Flagellar FliJ protein 23 144 1.0E-33 T 22-04-2016 IPR012823 Flagellar export FliJ GO:0009288|GO:0071973 PP4_RS08845 8f67a4ae588b619b9beb1373e8f2c2df 374 PANTHER PTHR11933 8 367 5.0E-203 T 22-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 PP4_RS08845 8f67a4ae588b619b9beb1373e8f2c2df 374 SUPERFAMILY SSF52402 11 249 3.53E-55 T 22-04-2016 PP4_RS08845 8f67a4ae588b619b9beb1373e8f2c2df 374 Gene3D G3DSA:2.40.30.10 287 368 7.9E-30 T 22-04-2016 PP4_RS08845 8f67a4ae588b619b9beb1373e8f2c2df 374 PANTHER PTHR11933:SF10 8 367 5.0E-203 T 22-04-2016 PP4_RS08845 8f67a4ae588b619b9beb1373e8f2c2df 374 Gene3D G3DSA:3.40.50.620 9 217 1.7E-96 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS08845 8f67a4ae588b619b9beb1373e8f2c2df 374 Gene3D G3DSA:2.30.30.280 218 286 1.4E-31 T 22-04-2016 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 PP4_RS08845 8f67a4ae588b619b9beb1373e8f2c2df 374 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 12 365 40.023 T 22-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 PP4_RS08845 8f67a4ae588b619b9beb1373e8f2c2df 374 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 13 364 2.8E-138 T 22-04-2016 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 PP4_RS08845 8f67a4ae588b619b9beb1373e8f2c2df 374 Pfam PF03054 tRNA methyl transferase 13 364 6.8E-135 T 22-04-2016 PP4_RS03955 4a10acf28a49413074898757731151d7 324 Gene3D G3DSA:3.40.50.720 3 113 2.1E-27 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS03955 4a10acf28a49413074898757731151d7 324 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 109 286 1.7E-59 T 22-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 PP4_RS03955 4a10acf28a49413074898757731151d7 324 SUPERFAMILY SSF52283 1 132 5.48E-27 T 22-04-2016 PP4_RS03955 4a10acf28a49413074898757731151d7 324 PANTHER PTHR10996:SF118 1 323 4.8E-126 T 22-04-2016 PP4_RS03955 4a10acf28a49413074898757731151d7 324 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 5 318 1.3E-27 T 22-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 PP4_RS03955 4a10acf28a49413074898757731151d7 324 SUPERFAMILY SSF51735 100 287 2.19E-56 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS03955 4a10acf28a49413074898757731151d7 324 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 226 242 - T 22-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site PP4_RS03955 4a10acf28a49413074898757731151d7 324 Gene3D G3DSA:3.40.50.720 114 289 2.9E-64 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS03955 4a10acf28a49413074898757731151d7 324 PANTHER PTHR10996 1 323 4.8E-126 T 22-04-2016 PP4_RS24830 389cc294eb3739c1c0db8b0475a63fcf 176 PRINTS PR00601 Bacterioferritin signature 163 176 5.5E-6 T 22-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 PP4_RS24830 389cc294eb3739c1c0db8b0475a63fcf 176 PRINTS PR00601 Bacterioferritin signature 73 93 5.5E-6 T 22-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 PP4_RS24830 389cc294eb3739c1c0db8b0475a63fcf 176 PRINTS PR00601 Bacterioferritin signature 32 51 5.5E-6 T 22-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 PP4_RS24830 389cc294eb3739c1c0db8b0475a63fcf 176 Gene3D G3DSA:1.20.1260.10 32 174 8.4E-52 T 22-04-2016 IPR012347 Ferritin-related PP4_RS24830 389cc294eb3739c1c0db8b0475a63fcf 176 SUPERFAMILY SSF47240 31 174 2.42E-41 T 22-04-2016 IPR009078 Ferritin-like superfamily PP4_RS24830 389cc294eb3739c1c0db8b0475a63fcf 176 PANTHER PTHR30295:SF1 13 176 7.1E-55 T 22-04-2016 PP4_RS24830 389cc294eb3739c1c0db8b0475a63fcf 176 PANTHER PTHR30295 13 176 7.1E-55 T 22-04-2016 PP4_RS24830 389cc294eb3739c1c0db8b0475a63fcf 176 Pfam PF00210 Ferritin-like domain 39 174 3.4E-31 T 22-04-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 PP4_RS24830 389cc294eb3739c1c0db8b0475a63fcf 176 PIRSF PIRSF018063 12 176 6.7E-63 T 22-04-2016 IPR014490 Uncharacterised conserved protein UCP018063, ferritin fold PP4_RS07025 b4808e4fd2cdd42c9d497e6f961e7aa9 233 Pfam PF03963 Flagellar hook capping protein - N-terminal region 17 84 8.4E-21 T 22-04-2016 IPR005648 Flagellar hook capping protein PP4_RS07025 b4808e4fd2cdd42c9d497e6f961e7aa9 233 PANTHER PTHR30435 19 223 2.5E-49 T 22-04-2016 PP4_RS07025 b4808e4fd2cdd42c9d497e6f961e7aa9 233 Pfam PF13860 FlgD Ig-like domain 114 185 1.2E-22 T 22-04-2016 IPR025965 FlgD Ig-like domain PP4_RS07025 b4808e4fd2cdd42c9d497e6f961e7aa9 233 Pfam PF13861 FlgD Tudor-like domain 93 229 1.3E-16 T 22-04-2016 IPR025963 FlgD Tudor-like domain PP4_RS07025 b4808e4fd2cdd42c9d497e6f961e7aa9 233 PANTHER PTHR30435:SF15 19 223 2.5E-49 T 22-04-2016 PP4_RS21760 fc8e7bd84e635f07f1fec1d30319d5fe 127 Gene3D G3DSA:2.40.50.100 3 123 5.8E-45 T 22-04-2016 PP4_RS21760 fc8e7bd84e635f07f1fec1d30319d5fe 127 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 3 125 3.8E-43 T 22-04-2016 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 PP4_RS21760 fc8e7bd84e635f07f1fec1d30319d5fe 127 PANTHER PTHR11715 2 127 8.0E-58 T 22-04-2016 IPR002930 Glycine cleavage system H-protein PP4_RS21760 fc8e7bd84e635f07f1fec1d30319d5fe 127 SUPERFAMILY SSF51230 2 122 1.67E-36 T 22-04-2016 IPR011053 Single hybrid motif PP4_RS21760 fc8e7bd84e635f07f1fec1d30319d5fe 127 Pfam PF01597 Glycine cleavage H-protein 4 122 9.3E-40 T 22-04-2016 IPR002930 Glycine cleavage system H-protein PP4_RS21760 fc8e7bd84e635f07f1fec1d30319d5fe 127 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 1 122 27.903 T 22-04-2016 IPR002930 Glycine cleavage system H-protein PP4_RS26170 c6598d3a68b1c41b1bab403e5247385b 463 PANTHER PTHR11958:SF5 23 452 9.2E-241 T 22-04-2016 PP4_RS26170 c6598d3a68b1c41b1bab403e5247385b 463 SUPERFAMILY SSF118215 29 442 1.83E-98 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS26170 c6598d3a68b1c41b1bab403e5247385b 463 Gene3D G3DSA:1.10.3860.10 25 449 3.4E-102 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS26170 c6598d3a68b1c41b1bab403e5247385b 463 PRINTS PR00173 Glutamate-aspartate symporter signature 370 389 2.0E-29 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS26170 c6598d3a68b1c41b1bab403e5247385b 463 PRINTS PR00173 Glutamate-aspartate symporter signature 75 95 2.0E-29 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS26170 c6598d3a68b1c41b1bab403e5247385b 463 PRINTS PR00173 Glutamate-aspartate symporter signature 105 130 2.0E-29 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS26170 c6598d3a68b1c41b1bab403e5247385b 463 PRINTS PR00173 Glutamate-aspartate symporter signature 182 204 2.0E-29 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS26170 c6598d3a68b1c41b1bab403e5247385b 463 PRINTS PR00173 Glutamate-aspartate symporter signature 27 47 2.0E-29 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS26170 c6598d3a68b1c41b1bab403e5247385b 463 PRINTS PR00173 Glutamate-aspartate symporter signature 397 417 2.0E-29 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS26170 c6598d3a68b1c41b1bab403e5247385b 463 PANTHER PTHR11958 23 452 9.2E-241 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS26170 c6598d3a68b1c41b1bab403e5247385b 463 Pfam PF00375 Sodium:dicarboxylate symporter family 29 442 1.1E-103 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS18680 70de560ae33b7b4ea94f2c8f8df02b14 83 Gene3D G3DSA:2.30.30.320 2 71 2.1E-31 T 22-04-2016 IPR023387 DUF1653-like domain PP4_RS18680 70de560ae33b7b4ea94f2c8f8df02b14 83 Pfam PF07866 Protein of unknown function (DUF1653) 6 66 3.5E-28 T 22-04-2016 IPR023387 DUF1653-like domain PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 PANTHER PTHR33121:SF13 816 1093 4.8E-80 T 22-04-2016 PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 Gene3D G3DSA:3.30.70.270 662 835 3.0E-59 T 22-04-2016 PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 Pfam PF08447 PAS fold 306 393 1.4E-8 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 Pfam PF08447 PAS fold 53 139 3.4E-12 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 Gene3D G3DSA:3.30.450.20 31 143 1.4E-19 T 22-04-2016 PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 658 826 1.5E-46 T 22-04-2016 IPR000160 GGDEF domain PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 SUPERFAMILY SSF55073 666 828 2.9E-48 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 SMART SM00091 30 98 0.019 T 22-04-2016 IPR000014 PAS domain PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 SMART SM00091 537 604 1.2E-7 T 22-04-2016 IPR000014 PAS domain PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 SMART SM00091 283 351 15.0 T 22-04-2016 IPR000014 PAS domain PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 SMART SM00091 158 228 3.5E-6 T 22-04-2016 IPR000014 PAS domain PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 SMART SM00091 412 479 1.2E-7 T 22-04-2016 IPR000014 PAS domain PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 Pfam PF00990 Diguanylate cyclase, GGDEF domain 661 823 1.3E-48 T 22-04-2016 IPR000160 GGDEF domain PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 SUPERFAMILY SSF141868 842 1093 3.4E-90 T 22-04-2016 IPR001633 EAL domain PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 Gene3D G3DSA:3.30.450.20 266 402 7.0E-25 T 22-04-2016 PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 SUPERFAMILY SSF55785 269 398 4.19E-16 T 22-04-2016 IPR000014 PAS domain PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 SUPERFAMILY SSF55785 42 153 1.03E-17 T 22-04-2016 IPR000014 PAS domain PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 SMART SM00267 650 827 5.3E-65 T 22-04-2016 IPR000160 GGDEF domain PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 SUPERFAMILY SSF55785 143 269 2.79E-17 T 22-04-2016 IPR000014 PAS domain PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 PANTHER PTHR33121 816 1093 4.8E-80 T 22-04-2016 PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 409 532 4.8E-17 T 22-04-2016 IPR000014 PAS domain PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 280 407 7.8E-6 T 22-04-2016 IPR000014 PAS domain PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 156 278 3.8E-15 T 22-04-2016 IPR000014 PAS domain PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 40 153 9.7E-12 T 22-04-2016 IPR000014 PAS domain PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 533 656 5.6E-22 T 22-04-2016 IPR000014 PAS domain PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 SMART SM00086 358 400 5.5E-4 T 22-04-2016 IPR001610 PAC motif PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 SMART SM00086 105 146 0.51 T 22-04-2016 IPR001610 PAC motif PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 SMART SM00086 231 271 120.0 T 22-04-2016 IPR001610 PAC motif PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 SMART SM00086 610 650 0.021 T 22-04-2016 IPR001610 PAC motif PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 SMART SM00086 485 525 290.0 T 22-04-2016 IPR001610 PAC motif PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 Gene3D G3DSA:3.20.20.450 840 1093 5.1E-96 T 22-04-2016 IPR001633 EAL domain PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 Gene3D G3DSA:3.30.450.20 144 265 2.5E-15 T 22-04-2016 PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 Gene3D G3DSA:3.30.450.20 523 648 5.5E-27 T 22-04-2016 PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 Gene3D G3DSA:3.30.450.20 403 522 4.2E-22 T 22-04-2016 PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 SMART SM00052 837 1086 1.7E-115 T 22-04-2016 IPR001633 EAL domain PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 Pfam PF00989 PAS fold 159 221 1.6E-7 T 22-04-2016 IPR013767 PAS fold GO:0006355 PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 Pfam PF13426 PAS domain 422 524 4.3E-8 T 22-04-2016 IPR000014 PAS domain PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 Pfam PF13426 PAS domain 547 649 1.4E-10 T 22-04-2016 IPR000014 PAS domain PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 SUPERFAMILY SSF55785 397 523 4.01E-20 T 22-04-2016 IPR000014 PAS domain PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 SUPERFAMILY SSF55785 522 648 1.34E-24 T 22-04-2016 IPR000014 PAS domain PP4_RS19355 95b8cd5fddc9962a75794f1c2e2f1da8 1098 Pfam PF00563 EAL domain 843 1081 2.8E-72 T 22-04-2016 IPR001633 EAL domain PP4_RS21260 1a4408046bfc2bfc8aa825e272beca49 765 Gene3D G3DSA:3.30.565.10 302 482 1.3E-29 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS21260 1a4408046bfc2bfc8aa825e272beca49 765 Gene3D G3DSA:1.20.120.160 6 141 6.0E-31 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS21260 1a4408046bfc2bfc8aa825e272beca49 765 SMART SM00387 340 483 9.3E-22 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS21260 1a4408046bfc2bfc8aa825e272beca49 765 SMART SM00260 475 614 4.4E-15 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS21260 1a4408046bfc2bfc8aa825e272beca49 765 Gene3D G3DSA:2.30.30.40 570 614 6.9E-13 T 22-04-2016 PP4_RS21260 1a4408046bfc2bfc8aa825e272beca49 765 Gene3D G3DSA:2.30.30.40 483 504 6.9E-13 T 22-04-2016 PP4_RS21260 1a4408046bfc2bfc8aa825e272beca49 765 Gene3D G3DSA:3.40.50.2300 641 761 6.0E-33 T 22-04-2016 PP4_RS21260 1a4408046bfc2bfc8aa825e272beca49 765 SUPERFAMILY SSF50341 482 614 1.7E-25 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS21260 1a4408046bfc2bfc8aa825e272beca49 765 PANTHER PTHR22617 273 630 2.6E-131 T 22-04-2016 PP4_RS21260 1a4408046bfc2bfc8aa825e272beca49 765 PANTHER PTHR22617 165 234 2.6E-131 T 22-04-2016 PP4_RS21260 1a4408046bfc2bfc8aa825e272beca49 765 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 342 482 4.2E-13 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS21260 1a4408046bfc2bfc8aa825e272beca49 765 PANTHER PTHR22617:SF6 273 630 2.6E-131 T 22-04-2016 PP4_RS21260 1a4408046bfc2bfc8aa825e272beca49 765 PANTHER PTHR22617:SF6 165 234 2.6E-131 T 22-04-2016 PP4_RS21260 1a4408046bfc2bfc8aa825e272beca49 765 PRINTS PR00344 Bacterial sensor protein C-terminal signature 443 461 9.6E-8 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS21260 1a4408046bfc2bfc8aa825e272beca49 765 PRINTS PR00344 Bacterial sensor protein C-terminal signature 385 399 9.6E-8 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS21260 1a4408046bfc2bfc8aa825e272beca49 765 PRINTS PR00344 Bacterial sensor protein C-terminal signature 467 480 9.6E-8 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS21260 1a4408046bfc2bfc8aa825e272beca49 765 Pfam PF01627 Hpt domain 11 100 2.9E-14 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS21260 1a4408046bfc2bfc8aa825e272beca49 765 SUPERFAMILY SSF47226 8 102 2.88E-23 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS21260 1a4408046bfc2bfc8aa825e272beca49 765 Pfam PF01584 CheW-like domain 489 618 3.6E-20 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS21260 1a4408046bfc2bfc8aa825e272beca49 765 SUPERFAMILY SSF55874 299 481 8.12E-35 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS21260 1a4408046bfc2bfc8aa825e272beca49 765 SMART SM00448 642 756 1.9E-31 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS21260 1a4408046bfc2bfc8aa825e272beca49 765 SUPERFAMILY SSF52172 641 761 2.7E-31 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS21260 1a4408046bfc2bfc8aa825e272beca49 765 Gene3D G3DSA:2.40.50.180 507 569 6.5E-5 T 22-04-2016 PP4_RS21260 1a4408046bfc2bfc8aa825e272beca49 765 SMART SM00073 8 105 1.1E-11 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS21260 1a4408046bfc2bfc8aa825e272beca49 765 Pfam PF00072 Response regulator receiver domain 644 755 8.9E-25 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS22840 15a4b0b9b6e031e0f4fa6b4edc38e10e 328 PRINTS PR00419 Adrenodoxin reductase family signature 4 26 6.5E-5 T 22-04-2016 PP4_RS22840 15a4b0b9b6e031e0f4fa6b4edc38e10e 328 PRINTS PR00419 Adrenodoxin reductase family signature 27 40 6.5E-5 T 22-04-2016 PP4_RS22840 15a4b0b9b6e031e0f4fa6b4edc38e10e 328 Gene3D G3DSA:3.50.50.60 111 186 1.0E-52 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS22840 15a4b0b9b6e031e0f4fa6b4edc38e10e 328 Gene3D G3DSA:3.50.50.60 2 41 1.0E-52 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS22840 15a4b0b9b6e031e0f4fa6b4edc38e10e 328 Gene3D G3DSA:3.50.50.60 287 328 1.0E-52 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS22840 15a4b0b9b6e031e0f4fa6b4edc38e10e 328 Pfam PF13450 NAD(P)-binding Rossmann-like domain 7 61 2.4E-15 T 22-04-2016 PP4_RS22840 15a4b0b9b6e031e0f4fa6b4edc38e10e 328 PANTHER PTHR16128:SF5 5 327 1.7E-88 T 22-04-2016 PP4_RS22840 15a4b0b9b6e031e0f4fa6b4edc38e10e 328 Pfam PF01593 Flavin containing amine oxidoreductase 109 324 2.4E-13 T 22-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 PP4_RS22840 15a4b0b9b6e031e0f4fa6b4edc38e10e 328 SUPERFAMILY SSF51905 287 327 1.25E-36 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS22840 15a4b0b9b6e031e0f4fa6b4edc38e10e 328 SUPERFAMILY SSF51905 2 196 1.25E-36 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS22840 15a4b0b9b6e031e0f4fa6b4edc38e10e 328 Gene3D G3DSA:3.90.660.10 187 284 2.7E-60 T 22-04-2016 PP4_RS22840 15a4b0b9b6e031e0f4fa6b4edc38e10e 328 Gene3D G3DSA:3.90.660.10 44 110 2.7E-60 T 22-04-2016 PP4_RS22840 15a4b0b9b6e031e0f4fa6b4edc38e10e 328 PANTHER PTHR16128 5 327 1.7E-88 T 22-04-2016 PP4_RS24555 1f0fa21a187bd2b4fdf3c4085951c325 333 SUPERFAMILY SSF110997 254 330 2.09E-12 T 22-04-2016 IPR007730 Sporulation-related domain GO:0042834 PP4_RS24555 1f0fa21a187bd2b4fdf3c4085951c325 333 PANTHER PTHR34183 8 333 1.8E-114 T 22-04-2016 PP4_RS24555 1f0fa21a187bd2b4fdf3c4085951c325 333 PANTHER PTHR34183:SF1 8 333 1.8E-114 T 22-04-2016 PP4_RS24555 1f0fa21a187bd2b4fdf3c4085951c325 333 SUPERFAMILY SSF50685 96 185 2.37E-11 T 22-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain PP4_RS24555 1f0fa21a187bd2b4fdf3c4085951c325 333 Gene3D G3DSA:2.40.40.10 138 190 1.5E-4 T 22-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain PP4_RS24555 1f0fa21a187bd2b4fdf3c4085951c325 333 Pfam PF03330 Lytic transglycolase 100 189 1.1E-24 T 22-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain PP4_RS24555 1f0fa21a187bd2b4fdf3c4085951c325 333 Pfam PF05036 Sporulation related domain 256 323 2.8E-12 T 22-04-2016 IPR007730 Sporulation-related domain GO:0042834 PP4_RS24555 1f0fa21a187bd2b4fdf3c4085951c325 333 Gene3D G3DSA:3.30.70.1070 255 324 2.3E-10 T 22-04-2016 IPR007730 Sporulation-related domain GO:0042834 PP4_RS24555 1f0fa21a187bd2b4fdf3c4085951c325 333 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 102 195 5.1E-42 T 22-04-2016 IPR012997 Rare lipoprotein A PP4_RS23535 471ea72a575f9310e1d0ecd04661ac40 345 Gene3D G3DSA:1.10.3470.10 5 344 1.5E-105 T 22-04-2016 IPR029022 ABC transporter, BtuC-like PP4_RS23535 471ea72a575f9310e1d0ecd04661ac40 345 PANTHER PTHR30472 1 345 7.2E-140 T 22-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 PP4_RS23535 471ea72a575f9310e1d0ecd04661ac40 345 PANTHER PTHR30472:SF3 1 345 7.2E-140 T 22-04-2016 PP4_RS23535 471ea72a575f9310e1d0ecd04661ac40 345 Pfam PF01032 FecCD transport family 17 342 4.3E-88 T 22-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 PP4_RS23535 471ea72a575f9310e1d0ecd04661ac40 345 SUPERFAMILY SSF81345 4 342 3.01E-82 T 22-04-2016 IPR029022 ABC transporter, BtuC-like PP4_RS07625 11cde97f4dbd5c3a9f1d37c01d880ba6 776 PANTHER PTHR23389:SF9 1 543 2.7E-204 T 22-04-2016 PP4_RS07625 11cde97f4dbd5c3a9f1d37c01d880ba6 776 Gene3D G3DSA:1.10.150.20 606 688 8.6E-13 T 22-04-2016 PP4_RS07625 11cde97f4dbd5c3a9f1d37c01d880ba6 776 Gene3D G3DSA:1.10.150.20 514 594 1.0E-26 T 22-04-2016 PP4_RS07625 11cde97f4dbd5c3a9f1d37c01d880ba6 776 SMART SM00278 522 541 140.0 T 22-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 PP4_RS07625 11cde97f4dbd5c3a9f1d37c01d880ba6 776 SMART SM00278 490 509 630.0 T 22-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 PP4_RS07625 11cde97f4dbd5c3a9f1d37c01d880ba6 776 SMART SM00278 456 475 3.0 T 22-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 PP4_RS07625 11cde97f4dbd5c3a9f1d37c01d880ba6 776 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 405 444 3.7E-10 T 22-04-2016 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 PP4_RS07625 11cde97f4dbd5c3a9f1d37c01d880ba6 776 SUPERFAMILY SSF47781 402 593 4.08E-52 T 22-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 PP4_RS07625 11cde97f4dbd5c3a9f1d37c01d880ba6 776 SMART SM00292 695 772 6.2E-9 T 22-04-2016 IPR001357 BRCT domain PP4_RS07625 11cde97f4dbd5c3a9f1d37c01d880ba6 776 SUPERFAMILY SSF52113 696 770 2.99E-17 T 22-04-2016 IPR001357 BRCT domain PP4_RS07625 11cde97f4dbd5c3a9f1d37c01d880ba6 776 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 329 344 - T 22-04-2016 IPR033136 NAD-dependent DNA ligase, conserved site PP4_RS07625 11cde97f4dbd5c3a9f1d37c01d880ba6 776 SUPERFAMILY SSF56091 3 314 1.42E-120 T 22-04-2016 PP4_RS07625 11cde97f4dbd5c3a9f1d37c01d880ba6 776 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 2 315 3.6E-130 T 22-04-2016 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 PP4_RS07625 11cde97f4dbd5c3a9f1d37c01d880ba6 776 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 320 396 1.0E-35 T 22-04-2016 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 PP4_RS07625 11cde97f4dbd5c3a9f1d37c01d880ba6 776 SMART SM00532 2 458 1.2E-259 T 22-04-2016 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 PP4_RS07625 11cde97f4dbd5c3a9f1d37c01d880ba6 776 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 114 143 - T 22-04-2016 IPR018239 NAD-dependent DNA ligase, active site PP4_RS07625 11cde97f4dbd5c3a9f1d37c01d880ba6 776 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 695 763 2.0E-10 T 22-04-2016 IPR001357 BRCT domain PP4_RS07625 11cde97f4dbd5c3a9f1d37c01d880ba6 776 SUPERFAMILY SSF50249 317 398 6.17E-29 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS07625 11cde97f4dbd5c3a9f1d37c01d880ba6 776 Hamap MF_01588 DNA ligase [ligA]. 1 769 52.676 T 22-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 PP4_RS07625 11cde97f4dbd5c3a9f1d37c01d880ba6 776 Gene3D G3DSA:2.40.50.140 318 389 7.8E-35 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS07625 11cde97f4dbd5c3a9f1d37c01d880ba6 776 Gene3D G3DSA:3.30.470.30 118 250 3.1E-51 T 22-04-2016 PP4_RS07625 11cde97f4dbd5c3a9f1d37c01d880ba6 776 Gene3D G3DSA:1.10.150.20 445 513 1.9E-28 T 22-04-2016 PP4_RS07625 11cde97f4dbd5c3a9f1d37c01d880ba6 776 SUPERFAMILY SSF47781 601 686 3.04E-9 T 22-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 PP4_RS07625 11cde97f4dbd5c3a9f1d37c01d880ba6 776 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 10 604 5.4E-224 T 22-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 PP4_RS07625 11cde97f4dbd5c3a9f1d37c01d880ba6 776 PANTHER PTHR23389 1 543 2.7E-204 T 22-04-2016 PP4_RS07625 11cde97f4dbd5c3a9f1d37c01d880ba6 776 Gene3D G3DSA:1.10.287.610 3 66 7.6E-30 T 22-04-2016 PP4_RS07625 11cde97f4dbd5c3a9f1d37c01d880ba6 776 Pfam PF12826 Helix-hairpin-helix motif 520 583 5.7E-20 T 22-04-2016 PP4_RS07625 11cde97f4dbd5c3a9f1d37c01d880ba6 776 Gene3D G3DSA:3.40.50.10190 695 772 1.3E-22 T 22-04-2016 IPR001357 BRCT domain PP4_RS01245 7888da09e7771055035f6306725949b1 413 PANTHER PTHR10909 27 391 2.5E-171 T 22-04-2016 PP4_RS01245 7888da09e7771055035f6306725949b1 413 Gene3D G3DSA:1.20.140.10 230 410 7.4E-57 T 22-04-2016 PP4_RS01245 7888da09e7771055035f6306725949b1 413 Gene3D G3DSA:2.40.110.10 149 229 8.8E-21 T 22-04-2016 PP4_RS01245 7888da09e7771055035f6306725949b1 413 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 254 388 1.9E-23 T 22-04-2016 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain PP4_RS01245 7888da09e7771055035f6306725949b1 413 PANTHER PTHR10909:SF300 27 391 2.5E-171 T 22-04-2016 PP4_RS01245 7888da09e7771055035f6306725949b1 413 Gene3D G3DSA:1.10.540.10 23 125 9.6E-27 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS01245 7888da09e7771055035f6306725949b1 413 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 149 228 2.8E-8 T 22-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 PP4_RS01245 7888da09e7771055035f6306725949b1 413 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 33 132 1.2E-5 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS01245 7888da09e7771055035f6306725949b1 413 PIRSF PIRSF016578 21 408 5.7E-32 T 22-04-2016 PP4_RS01245 7888da09e7771055035f6306725949b1 413 TIGRFAM TIGR04022 sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family 22 413 6.1E-183 T 22-04-2016 IPR023922 Sulphate-starvation-induced SfnB PP4_RS01245 7888da09e7771055035f6306725949b1 413 SUPERFAMILY SSF56645 34 238 5.37E-44 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 PP4_RS01245 7888da09e7771055035f6306725949b1 413 SUPERFAMILY SSF47203 252 410 1.39E-24 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS00105 f0b5a41910c0d40b9b4aecc6607e3dda 224 Gene3D G3DSA:3.40.50.2300 1 121 1.4E-38 T 22-04-2016 PP4_RS00105 f0b5a41910c0d40b9b4aecc6607e3dda 224 PANTHER PTHR26402:SF575 1 221 4.7E-95 T 22-04-2016 PP4_RS00105 f0b5a41910c0d40b9b4aecc6607e3dda 224 SUPERFAMILY SSF52172 1 173 1.12E-38 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS00105 f0b5a41910c0d40b9b4aecc6607e3dda 224 PANTHER PTHR26402 1 221 4.7E-95 T 22-04-2016 PP4_RS00105 f0b5a41910c0d40b9b4aecc6607e3dda 224 Pfam PF00072 Response regulator receiver domain 3 112 4.2E-27 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS00105 f0b5a41910c0d40b9b4aecc6607e3dda 224 Gene3D G3DSA:1.10.10.10 124 222 5.6E-33 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS00105 f0b5a41910c0d40b9b4aecc6607e3dda 224 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 3 220 2.8E-103 T 22-04-2016 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 PP4_RS00105 f0b5a41910c0d40b9b4aecc6607e3dda 224 SMART SM00862 145 220 2.6E-25 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS00105 f0b5a41910c0d40b9b4aecc6607e3dda 224 SMART SM00448 1 111 1.3E-41 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS00105 f0b5a41910c0d40b9b4aecc6607e3dda 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 220 4.7E-26 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS17175 a3147249b86666214884088b7d52bab5 1497 SUPERFAMILY SSF52058 1007 1185 4.01E-24 T 22-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like PP4_RS17175 a3147249b86666214884088b7d52bab5 1497 PANTHER PTHR24365:SF293 996 1166 5.0E-14 T 22-04-2016 PP4_RS17175 a3147249b86666214884088b7d52bab5 1497 Pfam PF14496 C-terminal novel E3 ligase, LRR-interacting 1217 1432 1.8E-62 T 22-04-2016 IPR029487 Novel E3 ligase domain GO:0004842|GO:0016567 KEGG: 00220+6.3.2.-|KEGG: 00261+6.3.2.-|KEGG: 00380+6.3.2.- PP4_RS17175 a3147249b86666214884088b7d52bab5 1497 SMART SM00369 1050 1073 6.3 T 22-04-2016 IPR003591 Leucine-rich repeat, typical subtype PP4_RS17175 a3147249b86666214884088b7d52bab5 1497 SMART SM00369 1121 1144 5.1 T 22-04-2016 IPR003591 Leucine-rich repeat, typical subtype PP4_RS17175 a3147249b86666214884088b7d52bab5 1497 SMART SM00369 1145 1167 34.0 T 22-04-2016 IPR003591 Leucine-rich repeat, typical subtype PP4_RS17175 a3147249b86666214884088b7d52bab5 1497 Gene3D G3DSA:1.20.58.360 1295 1427 4.6E-38 T 22-04-2016 PP4_RS17175 a3147249b86666214884088b7d52bab5 1497 Gene3D G3DSA:3.80.10.10 1009 1188 7.4E-29 T 22-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like PP4_RS17175 a3147249b86666214884088b7d52bab5 1497 PANTHER PTHR24365 996 1166 5.0E-14 T 22-04-2016 PP4_RS17175 a3147249b86666214884088b7d52bab5 1497 Gene3D G3DSA:1.20.1270.130 1211 1292 8.4E-6 T 22-04-2016 PP4_RS13025 6382a5005465e60e39c7d3d0be98ef17 237 Pfam PF02308 MgtC family 12 132 4.0E-35 T 22-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 PP4_RS13025 6382a5005465e60e39c7d3d0be98ef17 237 PANTHER PTHR33778:SF3 1 232 2.5E-115 T 22-04-2016 PP4_RS13025 6382a5005465e60e39c7d3d0be98ef17 237 PANTHER PTHR33778 1 232 2.5E-115 T 22-04-2016 PP4_RS13025 6382a5005465e60e39c7d3d0be98ef17 237 PRINTS PR01837 MgtC/SapB protein signature 87 111 2.1E-43 T 22-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 PP4_RS13025 6382a5005465e60e39c7d3d0be98ef17 237 PRINTS PR01837 MgtC/SapB protein signature 13 32 2.1E-43 T 22-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 PP4_RS13025 6382a5005465e60e39c7d3d0be98ef17 237 PRINTS PR01837 MgtC/SapB protein signature 60 82 2.1E-43 T 22-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 PP4_RS13025 6382a5005465e60e39c7d3d0be98ef17 237 PRINTS PR01837 MgtC/SapB protein signature 32 50 2.1E-43 T 22-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 PP4_RS04925 c6978c7dfd903f2b7e8079233a8ca681 326 PIRSF PIRSF017082 1 326 3.7E-83 T 22-04-2016 IPR005064 Bordetella uptake gene GO:0030288 PP4_RS04925 c6978c7dfd903f2b7e8079233a8ca681 326 Gene3D G3DSA:3.40.190.10 124 218 5.8E-5 T 22-04-2016 PP4_RS04925 c6978c7dfd903f2b7e8079233a8ca681 326 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 55 323 3.1E-24 T 22-04-2016 IPR005064 Bordetella uptake gene GO:0030288 PP4_RS04925 c6978c7dfd903f2b7e8079233a8ca681 326 PANTHER PTHR30349 1 286 1.5E-181 T 22-04-2016 PP4_RS04925 c6978c7dfd903f2b7e8079233a8ca681 326 SUPERFAMILY SSF53850 52 229 2.47E-11 T 22-04-2016 PP4_RS04925 c6978c7dfd903f2b7e8079233a8ca681 326 PANTHER PTHR30349:SF29 1 286 1.5E-181 T 22-04-2016 PP4_RS21385 89811b5dd638adc660adaaec039f69c7 116 ProSitePatterns PS01015 Ribosomal protein L19 signature. 87 102 - T 22-04-2016 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS21385 89811b5dd638adc660adaaec039f69c7 116 Pfam PF01245 Ribosomal protein L19 5 114 5.4E-50 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS21385 89811b5dd638adc660adaaec039f69c7 116 PANTHER PTHR15680 1 115 1.0E-54 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS21385 89811b5dd638adc660adaaec039f69c7 116 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 4 114 2.4E-50 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS21385 89811b5dd638adc660adaaec039f69c7 116 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 3 115 30.171 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS21385 89811b5dd638adc660adaaec039f69c7 116 PIRSF PIRSF002191 1 116 1.3E-49 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS21385 89811b5dd638adc660adaaec039f69c7 116 PRINTS PR00061 Ribosomal protein L19 signature 5 34 1.5E-40 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS21385 89811b5dd638adc660adaaec039f69c7 116 PRINTS PR00061 Ribosomal protein L19 signature 35 64 1.5E-40 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS21385 89811b5dd638adc660adaaec039f69c7 116 PRINTS PR00061 Ribosomal protein L19 signature 89 114 1.5E-40 T 22-04-2016 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS21385 89811b5dd638adc660adaaec039f69c7 116 SUPERFAMILY SSF50104 2 115 5.52E-46 T 22-04-2016 IPR008991 Translation protein SH3-like domain PP4_RS18135 bc743776b12c8c40d3fc683ea66162e8 1496 Gene3D G3DSA:1.20.58.360 1295 1428 9.3E-25 T 22-04-2016 PP4_RS18135 bc743776b12c8c40d3fc683ea66162e8 1496 Pfam PF14496 C-terminal novel E3 ligase, LRR-interacting 1213 1430 6.9E-35 T 22-04-2016 IPR029487 Novel E3 ligase domain GO:0004842|GO:0016567 KEGG: 00220+6.3.2.-|KEGG: 00261+6.3.2.-|KEGG: 00380+6.3.2.- PP4_RS18135 bc743776b12c8c40d3fc683ea66162e8 1496 SMART SM00369 1141 1163 24.0 T 22-04-2016 IPR003591 Leucine-rich repeat, typical subtype PP4_RS18135 bc743776b12c8c40d3fc683ea66162e8 1496 SMART SM00369 1045 1068 4.1 T 22-04-2016 IPR003591 Leucine-rich repeat, typical subtype PP4_RS18135 bc743776b12c8c40d3fc683ea66162e8 1496 SMART SM00369 1117 1140 5.6 T 22-04-2016 IPR003591 Leucine-rich repeat, typical subtype PP4_RS18135 bc743776b12c8c40d3fc683ea66162e8 1496 PANTHER PTHR23155 1000 1174 4.3E-17 T 22-04-2016 PP4_RS18135 bc743776b12c8c40d3fc683ea66162e8 1496 Pfam PF13855 Leucine rich repeat 1022 1081 1.4E-6 T 22-04-2016 IPR001611 Leucine-rich repeat GO:0005515 PP4_RS18135 bc743776b12c8c40d3fc683ea66162e8 1496 SUPERFAMILY SSF52058 1001 1165 8.5E-28 T 22-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like PP4_RS18135 bc743776b12c8c40d3fc683ea66162e8 1496 Gene3D G3DSA:3.80.10.10 1201 1223 3.6E-29 T 22-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like PP4_RS18135 bc743776b12c8c40d3fc683ea66162e8 1496 Gene3D G3DSA:3.80.10.10 1000 1157 3.6E-29 T 22-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like PP4_RS19695 35e2d9eb33e90a5da1f15fb48622cf79 295 Gene3D G3DSA:3.40.50.300 59 190 6.3E-15 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS19695 35e2d9eb33e90a5da1f15fb48622cf79 295 SUPERFAMILY SSF52540 47 190 2.74E-24 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS19695 35e2d9eb33e90a5da1f15fb48622cf79 295 PANTHER PTHR13779 216 288 8.5E-91 T 22-04-2016 PP4_RS19695 35e2d9eb33e90a5da1f15fb48622cf79 295 PANTHER PTHR13779 9 189 8.5E-91 T 22-04-2016 PP4_RS19695 35e2d9eb33e90a5da1f15fb48622cf79 295 PANTHER PTHR13779:SF28 216 288 8.5E-91 T 22-04-2016 PP4_RS19695 35e2d9eb33e90a5da1f15fb48622cf79 295 PANTHER PTHR13779:SF28 9 189 8.5E-91 T 22-04-2016 PP4_RS19695 35e2d9eb33e90a5da1f15fb48622cf79 295 Pfam PF05673 Protein of unknown function (DUF815) 35 288 2.8E-102 T 22-04-2016 IPR008533 Domain of unknown function DUF815 PP4_RS04760 d7a246f03486874502643cbb38f2fd2c 210 PANTHER PTHR30328:SF26 1 209 1.8E-37 T 22-04-2016 PP4_RS04760 d7a246f03486874502643cbb38f2fd2c 210 Gene3D G3DSA:1.10.10.60 1 44 3.0E-20 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS04760 d7a246f03486874502643cbb38f2fd2c 210 Gene3D G3DSA:1.10.357.10 65 207 2.3E-14 T 22-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PP4_RS04760 d7a246f03486874502643cbb38f2fd2c 210 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 59 - T 22-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site PP4_RS04760 d7a246f03486874502643cbb38f2fd2c 210 SUPERFAMILY SSF48498 84 201 4.11E-16 T 22-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal PP4_RS04760 d7a246f03486874502643cbb38f2fd2c 210 Pfam PF08361 MAATS-type transcriptional repressor, C-terminal region 84 203 2.0E-30 T 22-04-2016 IPR013572 Transcription regulator MAATS, C-terminal GO:0003677 PP4_RS04760 d7a246f03486874502643cbb38f2fd2c 210 SUPERFAMILY SSF46689 2 76 6.67E-20 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS04760 d7a246f03486874502643cbb38f2fd2c 210 Gene3D G3DSA:1.10.10.60 45 64 8.9E-10 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS04760 d7a246f03486874502643cbb38f2fd2c 210 PANTHER PTHR30328 1 209 1.8E-37 T 22-04-2016 PP4_RS04760 d7a246f03486874502643cbb38f2fd2c 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 2.1E-11 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS04760 d7a246f03486874502643cbb38f2fd2c 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 2.1E-11 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS04760 d7a246f03486874502643cbb38f2fd2c 210 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 6.7E-18 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS27425 51a3dfe6af6c368a5a3d41888ca46f3d 630 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 273 287 - T 22-04-2016 IPR020595 MnmG-related, conserved site PP4_RS27425 51a3dfe6af6c368a5a3d41888ca46f3d 630 Gene3D G3DSA:3.50.50.60 7 233 5.5E-51 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS27425 51a3dfe6af6c368a5a3d41888ca46f3d 630 Pfam PF01134 Glucose inhibited division protein A 8 399 6.0E-168 T 22-04-2016 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 PP4_RS27425 51a3dfe6af6c368a5a3d41888ca46f3d 630 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 368 391 - T 22-04-2016 IPR020595 MnmG-related, conserved site PP4_RS27425 51a3dfe6af6c368a5a3d41888ca46f3d 630 PANTHER PTHR11806 2 625 0.0 T 22-04-2016 PP4_RS27425 51a3dfe6af6c368a5a3d41888ca46f3d 630 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 7 620 7.9E-278 T 22-04-2016 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 PP4_RS27425 51a3dfe6af6c368a5a3d41888ca46f3d 630 SMART SM01228 544 615 1.0E-41 T 22-04-2016 PP4_RS27425 51a3dfe6af6c368a5a3d41888ca46f3d 630 Pfam PF13932 GidA associated domain 402 614 1.0E-71 T 22-04-2016 IPR026904 GidA associated domain 3 PP4_RS27425 51a3dfe6af6c368a5a3d41888ca46f3d 630 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 526 541 3.5E-5 T 22-04-2016 PP4_RS27425 51a3dfe6af6c368a5a3d41888ca46f3d 630 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 3.5E-5 T 22-04-2016 PP4_RS27425 51a3dfe6af6c368a5a3d41888ca46f3d 630 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 5 622 42.368 T 22-04-2016 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 PP4_RS27425 51a3dfe6af6c368a5a3d41888ca46f3d 630 SUPERFAMILY SSF51905 97 261 3.57E-49 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS27425 51a3dfe6af6c368a5a3d41888ca46f3d 630 SUPERFAMILY SSF51905 7 66 3.57E-49 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS27425 51a3dfe6af6c368a5a3d41888ca46f3d 630 PANTHER PTHR11806:SF0 2 625 0.0 T 22-04-2016 PP4_RS05760 cf42951fbe969300d2e9fc63c75bff62 236 Gene3D G3DSA:3.10.290.10 3 66 2.6E-19 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 PP4_RS05760 cf42951fbe969300d2e9fc63c75bff62 236 Pfam PF01479 S4 domain 6 46 5.6E-5 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 PP4_RS05760 cf42951fbe969300d2e9fc63c75bff62 236 SMART SM00363 5 65 3.4E-5 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 PP4_RS05760 cf42951fbe969300d2e9fc63c75bff62 236 PANTHER PTHR21600:SF21 1 236 5.1E-77 T 22-04-2016 PP4_RS05760 cf42951fbe969300d2e9fc63c75bff62 236 SUPERFAMILY SSF55120 103 234 3.35E-17 T 22-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS05760 cf42951fbe969300d2e9fc63c75bff62 236 SUPERFAMILY SSF55174 5 50 6.15E-10 T 22-04-2016 PP4_RS05760 cf42951fbe969300d2e9fc63c75bff62 236 PANTHER PTHR21600 1 236 5.1E-77 T 22-04-2016 PP4_RS00370 862cae6a9d987e1f8619ee889af1d77f 405 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 88 102 - T 22-04-2016 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 PP4_RS00370 862cae6a9d987e1f8619ee889af1d77f 405 PANTHER PTHR10314 14 405 1.9E-238 T 22-04-2016 PP4_RS00370 862cae6a9d987e1f8619ee889af1d77f 405 Gene3D G3DSA:3.40.50.1100 185 399 2.4E-97 T 22-04-2016 PP4_RS00370 862cae6a9d987e1f8619ee889af1d77f 405 PANTHER PTHR10314:SF3 14 405 1.9E-238 T 22-04-2016 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 PP4_RS00370 862cae6a9d987e1f8619ee889af1d77f 405 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 61 385 1.6E-47 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PP4_RS00370 862cae6a9d987e1f8619ee889af1d77f 405 SUPERFAMILY SSF53686 10 396 1.96E-149 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PP4_RS00370 862cae6a9d987e1f8619ee889af1d77f 405 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 9 398 51.909 T 22-04-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 PP4_RS00370 862cae6a9d987e1f8619ee889af1d77f 405 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 14 397 9.1E-193 T 22-04-2016 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 PP4_RS00370 862cae6a9d987e1f8619ee889af1d77f 405 Gene3D G3DSA:3.40.50.1100 106 184 2.4E-21 T 22-04-2016 PP4_RS00370 862cae6a9d987e1f8619ee889af1d77f 405 PIRSF PIRSF001413 3 404 3.0E-160 T 22-04-2016 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 PP4_RS21820 ecaf137d4b7fc5a53de1845d839a6b2f 317 PANTHER PTHR13393:SF0 3 306 2.8E-131 T 22-04-2016 PP4_RS21820 ecaf137d4b7fc5a53de1845d839a6b2f 317 PIRSF PIRSF029038 1 314 1.9E-155 T 22-04-2016 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 PP4_RS21820 ecaf137d4b7fc5a53de1845d839a6b2f 317 Gene3D G3DSA:3.40.50.150 89 201 7.3E-13 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS21820 ecaf137d4b7fc5a53de1845d839a6b2f 317 SUPERFAMILY SSF53335 43 302 1.06E-34 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS21820 ecaf137d4b7fc5a53de1845d839a6b2f 317 PANTHER PTHR13393 3 306 2.8E-131 T 22-04-2016 IPR010286 Ribosomal RNA large subunit methyltransferase F-like GO:0008168 PP4_RS21820 ecaf137d4b7fc5a53de1845d839a6b2f 317 Pfam PF05971 Protein of unknown function (DUF890) 4 302 5.8E-132 T 22-04-2016 IPR010286 Ribosomal RNA large subunit methyltransferase F-like GO:0008168 PP4_RS21820 ecaf137d4b7fc5a53de1845d839a6b2f 317 Hamap MF_01848 Ribosomal RNA large subunit methyltransferase F [rlmF]. 5 304 54.824 T 22-04-2016 IPR016909 Ribosomal RNA large subunit methyltransferase F GO:0005737|GO:0006364|GO:0008988 PP4_RS00650 7b98d90e51395f6af93f4c13496385ef 409 Pfam PF07670 Nucleoside recognition 52 157 2.0E-8 T 22-04-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: REACT_15518|Reactome: REACT_1698 PP4_RS00650 7b98d90e51395f6af93f4c13496385ef 409 Pfam PF07670 Nucleoside recognition 276 379 2.3E-6 T 22-04-2016 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: REACT_15518|Reactome: REACT_1698 PP4_RS00650 7b98d90e51395f6af93f4c13496385ef 409 PANTHER PTHR35793:SF2 2 409 4.6E-255 T 22-04-2016 PP4_RS00650 7b98d90e51395f6af93f4c13496385ef 409 PANTHER PTHR35793 2 409 4.6E-255 T 22-04-2016 PP4_RS00650 7b98d90e51395f6af93f4c13496385ef 409 PIRSF PIRSF036542 1 409 5.5E-213 T 22-04-2016 IPR011415 Predicted bifunctional spore maturation protein, fused SpmA/SpmB PP4_RS24660 63ebde7d086999bba31b098dd1c3741d 198 PANTHER PTHR33508 1 194 1.2E-61 T 22-04-2016 PP4_RS24660 63ebde7d086999bba31b098dd1c3741d 198 PANTHER PTHR33508:SF1 1 194 1.2E-61 T 22-04-2016 PP4_RS24660 63ebde7d086999bba31b098dd1c3741d 198 TIGRFAM TIGR00427 TIGR00427: membrane protein, MarC family 5 192 8.6E-35 T 22-04-2016 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 PP4_RS24660 63ebde7d086999bba31b098dd1c3741d 198 Pfam PF01914 MarC family integral membrane protein 3 195 1.9E-39 T 22-04-2016 IPR002771 Multiple antibiotic resistance (MarC)-related GO:0016021 PP4_RS13345 8fe3e3bfdddd11daac79fff1f1a494bc 359 SUPERFAMILY SSF54506 173 355 5.34E-57 T 22-04-2016 PP4_RS13345 8fe3e3bfdddd11daac79fff1f1a494bc 359 Gene3D G3DSA:3.10.310.10 2 177 1.3E-76 T 22-04-2016 PP4_RS13345 8fe3e3bfdddd11daac79fff1f1a494bc 359 PANTHER PTHR30349 1 136 9.5E-49 T 22-04-2016 PP4_RS13345 8fe3e3bfdddd11daac79fff1f1a494bc 359 Pfam PF04303 PrpF protein 3 351 7.3E-118 T 22-04-2016 IPR007400 PrpF protein PP4_RS13345 8fe3e3bfdddd11daac79fff1f1a494bc 359 PANTHER PTHR30349:SF39 1 136 9.5E-49 T 22-04-2016 PP4_RS13345 8fe3e3bfdddd11daac79fff1f1a494bc 359 Gene3D G3DSA:3.10.310.10 178 330 2.9E-54 T 22-04-2016 PP4_RS13345 8fe3e3bfdddd11daac79fff1f1a494bc 359 SUPERFAMILY SSF54506 2 169 4.94E-64 T 22-04-2016 PP4_RS09025 ffba25f41be35ebd95be5a3c9a77b902 1187 PANTHER PTHR11908:SF22 40 749 6.9E-299 T 22-04-2016 PP4_RS09025 ffba25f41be35ebd95be5a3c9a77b902 1187 SUPERFAMILY SSF54665 205 288 1.88E-10 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead PP4_RS09025 ffba25f41be35ebd95be5a3c9a77b902 1187 SUPERFAMILY SSF56003 311 744 3.84E-116 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS09025 ffba25f41be35ebd95be5a3c9a77b902 1187 SMART SM01008 204 290 2.2E-23 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead PP4_RS09025 ffba25f41be35ebd95be5a3c9a77b902 1187 Gene3D G3DSA:3.90.1170.50 182 277 3.2E-24 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead PP4_RS09025 ffba25f41be35ebd95be5a3c9a77b902 1187 SUPERFAMILY SSF46626 794 929 6.6E-27 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS09025 ffba25f41be35ebd95be5a3c9a77b902 1187 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 1078 1159 4.1E-11 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS09025 ffba25f41be35ebd95be5a3c9a77b902 1187 SUPERFAMILY SSF46626 1063 1172 3.2E-18 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS09025 ffba25f41be35ebd95be5a3c9a77b902 1187 Gene3D G3DSA:3.30.365.10 46 181 6.2E-35 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS09025 ffba25f41be35ebd95be5a3c9a77b902 1187 Gene3D G3DSA:1.10.760.10 1063 1166 1.1E-15 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS09025 ffba25f41be35ebd95be5a3c9a77b902 1187 Pfam PF00034 Cytochrome c 807 906 1.9E-9 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS09025 ffba25f41be35ebd95be5a3c9a77b902 1187 Gene3D G3DSA:3.30.365.10 385 552 4.5E-36 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS09025 ffba25f41be35ebd95be5a3c9a77b902 1187 Gene3D G3DSA:3.30.365.10 278 339 3.5E-7 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS09025 ffba25f41be35ebd95be5a3c9a77b902 1187 SUPERFAMILY SSF56003 45 230 3.84E-34 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS09025 ffba25f41be35ebd95be5a3c9a77b902 1187 Gene3D G3DSA:3.30.365.10 553 744 2.3E-45 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS09025 ffba25f41be35ebd95be5a3c9a77b902 1187 PANTHER PTHR11908 40 749 6.9E-299 T 22-04-2016 PP4_RS09025 ffba25f41be35ebd95be5a3c9a77b902 1187 Gene3D G3DSA:1.10.760.10 804 906 2.3E-16 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS09025 ffba25f41be35ebd95be5a3c9a77b902 1187 Gene3D G3DSA:1.10.760.10 948 1056 5.4E-8 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS09025 ffba25f41be35ebd95be5a3c9a77b902 1187 SUPERFAMILY SSF46626 943 1067 3.28E-13 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS09025 ffba25f41be35ebd95be5a3c9a77b902 1187 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 581 687 4.4E-15 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS09025 ffba25f41be35ebd95be5a3c9a77b902 1187 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 48 184 7.7E-24 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS09025 ffba25f41be35ebd95be5a3c9a77b902 1187 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 311 557 1.3E-31 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS11590 eee377cbd7effd89606ae276361d5be7 248 SUPERFAMILY SSF51735 4 247 4.44E-69 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS11590 eee377cbd7effd89606ae276361d5be7 248 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 178 0.0055 T 22-04-2016 PP4_RS11590 eee377cbd7effd89606ae276361d5be7 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 9.0E-39 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS11590 eee377cbd7effd89606ae276361d5be7 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 9.0E-39 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS11590 eee377cbd7effd89606ae276361d5be7 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 9.0E-39 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS11590 eee377cbd7effd89606ae276361d5be7 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 9.0E-39 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS11590 eee377cbd7effd89606ae276361d5be7 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 9.0E-39 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS11590 eee377cbd7effd89606ae276361d5be7 248 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 9.0E-39 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS11590 eee377cbd7effd89606ae276361d5be7 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 4.4E-11 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS11590 eee377cbd7effd89606ae276361d5be7 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 4.4E-11 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS11590 eee377cbd7effd89606ae276361d5be7 248 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 4.4E-11 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS11590 eee377cbd7effd89606ae276361d5be7 248 PANTHER PTHR24322 157 189 1.5E-41 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS11590 eee377cbd7effd89606ae276361d5be7 248 PANTHER PTHR24322 7 140 1.5E-41 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS11590 eee377cbd7effd89606ae276361d5be7 248 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 11 247 3.6E-53 T 22-04-2016 PP4_RS11590 eee377cbd7effd89606ae276361d5be7 248 Gene3D G3DSA:3.40.50.720 3 247 3.5E-73 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS00940 d44cc98f3882429077263f5830ea5bb9 464 PANTHER PTHR11444 7 461 2.3E-234 T 22-04-2016 IPR000362 Fumarate lyase family PP4_RS00940 d44cc98f3882429077263f5830ea5bb9 464 Gene3D G3DSA:1.20.200.10 113 380 2.0E-107 T 22-04-2016 PP4_RS00940 d44cc98f3882429077263f5830ea5bb9 464 TIGRFAM TIGR00838 argH: argininosuccinate lyase 10 459 6.7E-193 T 22-04-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PP4_RS00940 d44cc98f3882429077263f5830ea5bb9 464 PRINTS PR00149 Fumarate lyase superfamily signature 237 264 1.0E-30 T 22-04-2016 IPR000362 Fumarate lyase family PP4_RS00940 d44cc98f3882429077263f5830ea5bb9 464 PRINTS PR00149 Fumarate lyase superfamily signature 108 126 1.0E-30 T 22-04-2016 IPR000362 Fumarate lyase family PP4_RS00940 d44cc98f3882429077263f5830ea5bb9 464 PRINTS PR00149 Fumarate lyase superfamily signature 153 171 1.0E-30 T 22-04-2016 IPR000362 Fumarate lyase family PP4_RS00940 d44cc98f3882429077263f5830ea5bb9 464 PRINTS PR00149 Fumarate lyase superfamily signature 281 297 1.0E-30 T 22-04-2016 IPR000362 Fumarate lyase family PP4_RS00940 d44cc98f3882429077263f5830ea5bb9 464 Pfam PF00206 Lyase 12 306 4.8E-78 T 22-04-2016 IPR022761 Fumarate lyase, N-terminal PP4_RS00940 d44cc98f3882429077263f5830ea5bb9 464 PRINTS PR00145 Argininosuccinate lyase family signature 281 297 1.6E-70 T 22-04-2016 PP4_RS00940 d44cc98f3882429077263f5830ea5bb9 464 PRINTS PR00145 Argininosuccinate lyase family signature 199 215 1.6E-70 T 22-04-2016 PP4_RS00940 d44cc98f3882429077263f5830ea5bb9 464 PRINTS PR00145 Argininosuccinate lyase family signature 237 261 1.6E-70 T 22-04-2016 PP4_RS00940 d44cc98f3882429077263f5830ea5bb9 464 PRINTS PR00145 Argininosuccinate lyase family signature 107 129 1.6E-70 T 22-04-2016 PP4_RS00940 d44cc98f3882429077263f5830ea5bb9 464 PRINTS PR00145 Argininosuccinate lyase family signature 316 335 1.6E-70 T 22-04-2016 PP4_RS00940 d44cc98f3882429077263f5830ea5bb9 464 PRINTS PR00145 Argininosuccinate lyase family signature 148 168 1.6E-70 T 22-04-2016 PP4_RS00940 d44cc98f3882429077263f5830ea5bb9 464 ProSitePatterns PS00163 Fumarate lyases signature. 281 290 - T 22-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 PP4_RS00940 d44cc98f3882429077263f5830ea5bb9 464 SUPERFAMILY SSF48557 10 458 4.71E-153 T 22-04-2016 IPR008948 L-Aspartase-like GO:0003824 PP4_RS00940 d44cc98f3882429077263f5830ea5bb9 464 Gene3D G3DSA:1.10.275.10 8 112 4.8E-41 T 22-04-2016 IPR024083 Fumarase/histidase, N-terminal PP4_RS00940 d44cc98f3882429077263f5830ea5bb9 464 Gene3D G3DSA:1.10.40.30 381 438 5.7E-31 T 22-04-2016 PP4_RS00940 d44cc98f3882429077263f5830ea5bb9 464 PANTHER PTHR11444:SF3 7 461 2.3E-234 T 22-04-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PP4_RS00940 d44cc98f3882429077263f5830ea5bb9 464 Pfam PF14698 Argininosuccinate lyase C-terminal 369 437 3.1E-25 T 22-04-2016 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PP4_RS00940 d44cc98f3882429077263f5830ea5bb9 464 Hamap MF_00006 Argininosuccinate lyase [argH]. 8 459 43.666 T 22-04-2016 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PP4_RS13535 16c45dab8c4641a23b3ba106be52d250 402 PANTHER PTHR18919 1 402 1.0E-181 T 22-04-2016 PP4_RS13535 16c45dab8c4641a23b3ba106be52d250 402 Pfam PF02803 Thiolase, C-terminal domain 279 400 1.6E-42 T 22-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 PP4_RS13535 16c45dab8c4641a23b3ba106be52d250 402 ProSitePatterns PS00737 Thiolases signature 2. 348 364 - T 22-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 PP4_RS13535 16c45dab8c4641a23b3ba106be52d250 402 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 8 400 1.2E-124 T 22-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 PP4_RS13535 16c45dab8c4641a23b3ba106be52d250 402 SUPERFAMILY SSF53901 4 276 9.76E-66 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS13535 16c45dab8c4641a23b3ba106be52d250 402 Gene3D G3DSA:3.40.47.10 188 284 2.4E-56 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS13535 16c45dab8c4641a23b3ba106be52d250 402 Gene3D G3DSA:3.40.47.10 5 127 2.4E-56 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS13535 16c45dab8c4641a23b3ba106be52d250 402 Gene3D G3DSA:3.40.47.10 286 400 3.0E-57 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS13535 16c45dab8c4641a23b3ba106be52d250 402 Gene3D G3DSA:3.40.47.10 147 187 3.0E-57 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS13535 16c45dab8c4641a23b3ba106be52d250 402 SUPERFAMILY SSF53901 280 400 2.99E-40 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS13535 16c45dab8c4641a23b3ba106be52d250 402 Pfam PF00108 Thiolase, N-terminal domain 6 271 5.6E-60 T 22-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 PP4_RS13535 16c45dab8c4641a23b3ba106be52d250 402 PIRSF PIRSF000429 1 401 7.2E-118 T 22-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 PP4_RS13535 16c45dab8c4641a23b3ba106be52d250 402 PANTHER PTHR18919:SF14 1 402 1.0E-181 T 22-04-2016 PP4_RS24985 4bc13a6857afed5715b3d71cf285a613 395 Pfam PF13393 Histidyl-tRNA synthetase 12 321 2.0E-117 T 22-04-2016 PP4_RS24985 4bc13a6857afed5715b3d71cf285a613 395 PANTHER PTHR11476:SF5 10 374 4.3E-74 T 22-04-2016 PP4_RS24985 4bc13a6857afed5715b3d71cf285a613 395 Gene3D G3DSA:3.30.930.10 20 322 2.3E-69 T 22-04-2016 PP4_RS24985 4bc13a6857afed5715b3d71cf285a613 395 PIRSF PIRSF001549 7 389 1.5E-47 T 22-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 PP4_RS24985 4bc13a6857afed5715b3d71cf285a613 395 TIGRFAM TIGR00443 hisZ_biosyn_reg: ATP phosphoribosyltransferase, regulatory subunit 15 324 4.5E-90 T 22-04-2016 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 UniPathway: UPA00031 PP4_RS24985 4bc13a6857afed5715b3d71cf285a613 395 PANTHER PTHR11476 10 374 4.3E-74 T 22-04-2016 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Reactome: REACT_71 PP4_RS24985 4bc13a6857afed5715b3d71cf285a613 395 SUPERFAMILY SSF55681 7 323 1.24E-59 T 22-04-2016 PP4_RS24985 4bc13a6857afed5715b3d71cf285a613 395 Hamap MF_00125 ATP phosphoribosyltransferase regulatory subunit [hisZ]. 19 374 37.467 T 22-04-2016 IPR004517 ATP phosphoribosyltransferase regulatory subunit GO:0000105|GO:0005737 UniPathway: UPA00031 PP4_RS07190 6147f703da84127c9eb35c4fe77a0ead 592 PANTHER PTHR30046:SF0 374 592 3.7E-186 T 22-04-2016 PP4_RS07190 6147f703da84127c9eb35c4fe77a0ead 592 PANTHER PTHR30046:SF0 27 340 3.7E-186 T 22-04-2016 PP4_RS07190 6147f703da84127c9eb35c4fe77a0ead 592 PIRSF PIRSF004862 25 592 2.3E-137 T 22-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 PP4_RS07190 6147f703da84127c9eb35c4fe77a0ead 592 PANTHER PTHR30046 374 592 3.7E-186 T 22-04-2016 PP4_RS07190 6147f703da84127c9eb35c4fe77a0ead 592 PANTHER PTHR30046 27 340 3.7E-186 T 22-04-2016 PP4_RS07190 6147f703da84127c9eb35c4fe77a0ead 592 PRINTS PR01009 Flagellar M-ring protein signature 283 301 6.3E-39 T 22-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 PP4_RS07190 6147f703da84127c9eb35c4fe77a0ead 592 PRINTS PR01009 Flagellar M-ring protein signature 391 415 6.3E-39 T 22-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 PP4_RS07190 6147f703da84127c9eb35c4fe77a0ead 592 PRINTS PR01009 Flagellar M-ring protein signature 138 156 6.3E-39 T 22-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 PP4_RS07190 6147f703da84127c9eb35c4fe77a0ead 592 PRINTS PR01009 Flagellar M-ring protein signature 170 184 6.3E-39 T 22-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 PP4_RS07190 6147f703da84127c9eb35c4fe77a0ead 592 PRINTS PR01009 Flagellar M-ring protein signature 213 231 6.3E-39 T 22-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 PP4_RS07190 6147f703da84127c9eb35c4fe77a0ead 592 Pfam PF08345 Flagellar M-ring protein C-terminal 270 468 9.5E-48 T 22-04-2016 IPR013556 Flagellar M-ring C-terminal PP4_RS07190 6147f703da84127c9eb35c4fe77a0ead 592 Pfam PF01514 Secretory protein of YscJ/FliF family 46 237 4.3E-70 T 22-04-2016 IPR006182 Secretory protein YscJ/FliF PP4_RS07190 6147f703da84127c9eb35c4fe77a0ead 592 TIGRFAM TIGR00206 fliF: flagellar M-ring protein FliF 38 591 1.9E-96 T 22-04-2016 IPR000067 Flagellar M-ring protein FliF GO:0003774|GO:0009431|GO:0071973 PP4_RS02285 bdf1be61d21143e28b7fdd5f8c513a0b 629 Pfam PF03797 Autotransporter beta-domain 353 617 2.0E-47 T 22-04-2016 IPR005546 Autotransporter beta-domain PP4_RS02285 bdf1be61d21143e28b7fdd5f8c513a0b 629 SUPERFAMILY SSF103515 334 629 5.75E-43 T 22-04-2016 IPR005546 Autotransporter beta-domain PP4_RS02285 bdf1be61d21143e28b7fdd5f8c513a0b 629 ProSitePatterns PS01098 Lipolytic enzymes "G-D-S-L" family, serine active site. 31 42 - T 22-04-2016 IPR008265 Lipase, GDSL, active site GO:0006629|GO:0016298 PP4_RS02285 bdf1be61d21143e28b7fdd5f8c513a0b 629 SMART SM00869 354 619 3.5E-34 T 22-04-2016 IPR005546 Autotransporter beta-domain PP4_RS02285 bdf1be61d21143e28b7fdd5f8c513a0b 629 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 331 629 6.0E-12 T 22-04-2016 IPR006315 Outer membrane autotransporter barrel GO:0019867 PP4_RS02285 bdf1be61d21143e28b7fdd5f8c513a0b 629 Gene3D G3DSA:2.40.128.130 331 629 9.1E-61 T 22-04-2016 IPR005546 Autotransporter beta-domain PP4_RS02285 bdf1be61d21143e28b7fdd5f8c513a0b 629 Pfam PF00657 GDSL-like Lipase/Acylhydrolase 32 312 3.2E-7 T 22-04-2016 IPR001087 GDSL lipase/esterase GO:0016788 PP4_RS02285 bdf1be61d21143e28b7fdd5f8c513a0b 629 SUPERFAMILY SSF52266 29 57 2.83E-12 T 22-04-2016 IPR013830 SGNH hydrolase-type esterase domain PP4_RS02285 bdf1be61d21143e28b7fdd5f8c513a0b 629 SUPERFAMILY SSF52266 289 317 2.83E-12 T 22-04-2016 IPR013830 SGNH hydrolase-type esterase domain PP4_RS02285 bdf1be61d21143e28b7fdd5f8c513a0b 629 SUPERFAMILY SSF52266 98 250 2.83E-12 T 22-04-2016 IPR013830 SGNH hydrolase-type esterase domain PP4_RS02285 bdf1be61d21143e28b7fdd5f8c513a0b 629 PANTHER PTHR22835:SF222 1 444 1.3E-49 T 22-04-2016 PP4_RS02285 bdf1be61d21143e28b7fdd5f8c513a0b 629 Gene3D G3DSA:3.40.50.1110 16 323 1.9E-55 T 22-04-2016 IPR013830 SGNH hydrolase-type esterase domain PP4_RS02285 bdf1be61d21143e28b7fdd5f8c513a0b 629 PIRSF PIRSF037375 1 629 6.6E-207 T 22-04-2016 IPR017186 Lipase, autotransporter EstA PP4_RS02285 bdf1be61d21143e28b7fdd5f8c513a0b 629 PANTHER PTHR22835 1 444 1.3E-49 T 22-04-2016 PP4_RS20645 681547514a66bcd80421068273616109 302 TIGRFAM TIGR00380 cobD: cobalamin biosynthesis protein CobD 8 256 2.5E-59 T 22-04-2016 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 UniPathway: UPA00148 PP4_RS20645 681547514a66bcd80421068273616109 302 Hamap MF_00024 Cobalamin biosynthesis protein CbiB [cbiB]. 1 302 106.709 T 22-04-2016 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 UniPathway: UPA00148 PP4_RS20645 681547514a66bcd80421068273616109 302 Pfam PF03186 CobD/Cbib protein 8 282 1.7E-94 T 22-04-2016 IPR004485 Cobalamin biosynthesis CobD/CbiB GO:0009236|GO:0016021|GO:0048472 UniPathway: UPA00148 PP4_RS20645 681547514a66bcd80421068273616109 302 PANTHER PTHR34308 1 302 6.7E-99 T 22-04-2016 PP4_RS20645 681547514a66bcd80421068273616109 302 PANTHER PTHR34308:SF1 1 302 6.7E-99 T 22-04-2016 PP4_RS17490 7f7d8ed1ce38d9ae0db194677800a779 862 SUPERFAMILY SSF53732 16 586 7.98E-182 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS17490 7f7d8ed1ce38d9ae0db194677800a779 862 Gene3D G3DSA:3.40.1060.10 227 360 7.4E-35 T 22-04-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS17490 7f7d8ed1ce38d9ae0db194677800a779 862 SUPERFAMILY SSF52016 597 857 4.32E-68 T 22-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel PP4_RS17490 7f7d8ed1ce38d9ae0db194677800a779 862 Pfam PF00694 Aconitase C-terminal domain 656 787 6.3E-30 T 22-04-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS17490 7f7d8ed1ce38d9ae0db194677800a779 862 Gene3D G3DSA:3.30.499.10 361 545 1.6E-54 T 22-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS17490 7f7d8ed1ce38d9ae0db194677800a779 862 Pfam PF00330 Aconitase family (aconitate hydratase) 70 533 4.5E-149 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS17490 7f7d8ed1ce38d9ae0db194677800a779 862 TIGRFAM TIGR02333 2met_isocit_dHY: 2-methylisocitrate dehydratase, Fe/S-dependent 2 859 0.0 T 22-04-2016 IPR012708 2-methylisocitrate dehydratase AcnD, Fe/S-dependent GO:0019679 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3|UniPathway: UPA00946 PP4_RS17490 7f7d8ed1ce38d9ae0db194677800a779 862 PANTHER PTHR11670 720 861 0.0 T 22-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS17490 7f7d8ed1ce38d9ae0db194677800a779 862 PANTHER PTHR11670 9 676 0.0 T 22-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS17490 7f7d8ed1ce38d9ae0db194677800a779 862 Gene3D G3DSA:3.20.19.10 605 857 6.8E-65 T 22-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel PP4_RS17490 7f7d8ed1ce38d9ae0db194677800a779 862 PANTHER PTHR11670:SF43 720 861 0.0 T 22-04-2016 PP4_RS17490 7f7d8ed1ce38d9ae0db194677800a779 862 PANTHER PTHR11670:SF43 9 676 0.0 T 22-04-2016 PP4_RS17490 7f7d8ed1ce38d9ae0db194677800a779 862 Gene3D G3DSA:3.30.499.10 22 226 5.1E-63 T 22-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS17490 7f7d8ed1ce38d9ae0db194677800a779 862 PRINTS PR00415 Aconitase family signature 138 151 1.1E-27 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS17490 7f7d8ed1ce38d9ae0db194677800a779 862 PRINTS PR00415 Aconitase family signature 360 374 1.1E-27 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS17490 7f7d8ed1ce38d9ae0db194677800a779 862 PRINTS PR00415 Aconitase family signature 267 280 1.1E-27 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS17490 7f7d8ed1ce38d9ae0db194677800a779 862 PRINTS PR00415 Aconitase family signature 281 294 1.1E-27 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS17490 7f7d8ed1ce38d9ae0db194677800a779 862 PRINTS PR00415 Aconitase family signature 191 204 1.1E-27 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS17490 7f7d8ed1ce38d9ae0db194677800a779 862 PRINTS PR00415 Aconitase family signature 464 477 1.1E-27 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS17490 7f7d8ed1ce38d9ae0db194677800a779 862 PRINTS PR00415 Aconitase family signature 162 170 1.1E-27 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS17490 7f7d8ed1ce38d9ae0db194677800a779 862 PRINTS PR00415 Aconitase family signature 205 220 1.1E-27 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS17490 7f7d8ed1ce38d9ae0db194677800a779 862 PRINTS PR00415 Aconitase family signature 402 413 1.1E-27 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS11130 9558fb0eb6e9c6e1976b3beddd10d03c 251 PANTHER PTHR30151:SF7 10 251 6.5E-91 T 22-04-2016 PP4_RS11130 9558fb0eb6e9c6e1976b3beddd10d03c 251 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 79 248 6.7E-23 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS11130 9558fb0eb6e9c6e1976b3beddd10d03c 251 PANTHER PTHR30151 10 251 6.5E-91 T 22-04-2016 PP4_RS11130 9558fb0eb6e9c6e1976b3beddd10d03c 251 SUPERFAMILY SSF161098 55 240 2.09E-29 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS11130 9558fb0eb6e9c6e1976b3beddd10d03c 251 Gene3D G3DSA:1.10.3720.10 56 248 5.6E-24 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS18030 20674e4796e57b8d71796087e6d6798c 372 Gene3D G3DSA:3.30.1490.20 126 176 1.1E-4 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 PP4_RS18030 20674e4796e57b8d71796087e6d6798c 372 Pfam PF11379 Protein of unknown function (DUF3182) 13 363 1.9E-145 T 22-04-2016 IPR021519 Protein of unknown function DUF3182 PP4_RS18030 20674e4796e57b8d71796087e6d6798c 372 SUPERFAMILY SSF56059 121 230 8.84E-8 T 22-04-2016 PP4_RS25220 c60912a99115413dcfd6d9c094fc1f4e 318 SUPERFAMILY SSF53756 40 296 8.79E-13 T 22-04-2016 PP4_RS25220 c60912a99115413dcfd6d9c094fc1f4e 318 Pfam PF13524 Glycosyl transferases group 1 212 287 3.4E-10 T 22-04-2016 PP4_RS00275 3939d516cad6f13c16f35b040aa7314b 102 Pfam PF14559 Tetratricopeptide repeat 27 71 1.2E-5 T 22-04-2016 PP4_RS00275 3939d516cad6f13c16f35b040aa7314b 102 Gene3D G3DSA:1.25.40.10 3 79 4.2E-12 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS00275 3939d516cad6f13c16f35b040aa7314b 102 SUPERFAMILY SSF48452 3 77 3.8E-12 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS00275 3939d516cad6f13c16f35b040aa7314b 102 SMART SM00028 50 83 8.2 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS00275 3939d516cad6f13c16f35b040aa7314b 102 SMART SM00028 16 49 11.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS19225 07a58e1a123c826ebaaea2926f3bee57 296 SUPERFAMILY SSF53686 8 295 3.84E-54 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PP4_RS19225 07a58e1a123c826ebaaea2926f3bee57 296 Gene3D G3DSA:3.40.50.1100 95 295 1.3E-36 T 22-04-2016 PP4_RS19225 07a58e1a123c826ebaaea2926f3bee57 296 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 26 287 2.3E-10 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PP4_RS19225 07a58e1a123c826ebaaea2926f3bee57 296 PIRSF PIRSF006278 2 296 2.2E-70 T 22-04-2016 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase PP4_RS14370 71a85195717b198b4862bb3e1cafb6ca 295 PANTHER PTHR22911 1 293 7.3E-91 T 22-04-2016 PP4_RS14370 71a85195717b198b4862bb3e1cafb6ca 295 TIGRFAM TIGR00688 rarD: protein RarD 3 254 1.3E-57 T 22-04-2016 IPR004626 RarD protein GO:0005215|GO:0005887|GO:0006810 PP4_RS14370 71a85195717b198b4862bb3e1cafb6ca 295 PANTHER PTHR22911:SF57 1 293 7.3E-91 T 22-04-2016 PP4_RS14370 71a85195717b198b4862bb3e1cafb6ca 295 Pfam PF00892 EamA-like transporter family 3 139 2.3E-7 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS14370 71a85195717b198b4862bb3e1cafb6ca 295 SUPERFAMILY SSF103481 36 140 1.28E-8 T 22-04-2016 PP4_RS14370 71a85195717b198b4862bb3e1cafb6ca 295 SUPERFAMILY SSF103481 182 284 3.92E-5 T 22-04-2016 PP4_RS26830 721a2921b21e8abed93a74207b50c1bc 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 67 3.9E-21 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS26830 721a2921b21e8abed93a74207b50c1bc 308 Gene3D G3DSA:1.10.10.10 2 87 5.1E-27 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS26830 721a2921b21e8abed93a74207b50c1bc 308 Gene3D G3DSA:3.40.190.10 94 179 2.5E-15 T 22-04-2016 PP4_RS26830 721a2921b21e8abed93a74207b50c1bc 308 SUPERFAMILY SSF46785 4 87 5.73E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS26830 721a2921b21e8abed93a74207b50c1bc 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 2.0E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS26830 721a2921b21e8abed93a74207b50c1bc 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 2.0E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS26830 721a2921b21e8abed93a74207b50c1bc 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 2.0E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS26830 721a2921b21e8abed93a74207b50c1bc 308 Gene3D G3DSA:3.40.190.10 180 264 3.7E-16 T 22-04-2016 PP4_RS26830 721a2921b21e8abed93a74207b50c1bc 308 SUPERFAMILY SSF53850 93 297 5.43E-28 T 22-04-2016 PP4_RS26830 721a2921b21e8abed93a74207b50c1bc 308 PANTHER PTHR30537 1 308 1.8E-99 T 22-04-2016 PP4_RS26830 721a2921b21e8abed93a74207b50c1bc 308 Pfam PF03466 LysR substrate binding domain 91 294 4.5E-30 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS26830 721a2921b21e8abed93a74207b50c1bc 308 PANTHER PTHR30537:SF26 1 308 1.8E-99 T 22-04-2016 PP4_RS04060 ec95a47b77b17cee49cba7a498e1fb4d 519 SMART SM00710 305 328 56.0 T 22-04-2016 IPR006626 Parallel beta-helix repeat PP4_RS04060 ec95a47b77b17cee49cba7a498e1fb4d 519 SMART SM00710 281 303 1000.0 T 22-04-2016 IPR006626 Parallel beta-helix repeat PP4_RS04060 ec95a47b77b17cee49cba7a498e1fb4d 519 SMART SM00710 330 352 160.0 T 22-04-2016 IPR006626 Parallel beta-helix repeat PP4_RS04060 ec95a47b77b17cee49cba7a498e1fb4d 519 SMART SM00710 219 246 8200.0 T 22-04-2016 IPR006626 Parallel beta-helix repeat PP4_RS04060 ec95a47b77b17cee49cba7a498e1fb4d 519 SMART SM00710 377 399 0.43 T 22-04-2016 IPR006626 Parallel beta-helix repeat PP4_RS04060 ec95a47b77b17cee49cba7a498e1fb4d 519 SMART SM00710 354 376 16.0 T 22-04-2016 IPR006626 Parallel beta-helix repeat PP4_RS04060 ec95a47b77b17cee49cba7a498e1fb4d 519 PANTHER PTHR22990 264 426 1.3E-18 T 22-04-2016 PP4_RS04060 ec95a47b77b17cee49cba7a498e1fb4d 519 TIGRFAM TIGR03804 para_beta_helix: parallel beta-helix repeat 371 411 2.1E-6 T 22-04-2016 IPR022441 Parallel beta-helix repeat-2 PP4_RS04060 ec95a47b77b17cee49cba7a498e1fb4d 519 Pfam PF13229 Right handed beta helix region 274 419 3.7E-14 T 22-04-2016 PP4_RS04060 ec95a47b77b17cee49cba7a498e1fb4d 519 Gene3D G3DSA:2.160.20.10 266 417 1.8E-11 T 22-04-2016 IPR012334 Pectin lyase fold PP4_RS04060 ec95a47b77b17cee49cba7a498e1fb4d 519 SUPERFAMILY SSF51126 139 439 1.27E-37 T 22-04-2016 IPR011050 Pectin lyase fold/virulence factor PP4_RS04060 ec95a47b77b17cee49cba7a498e1fb4d 519 SMART SM00722 238 398 1.6E-8 T 22-04-2016 IPR006633 Carbohydrate-binding/sugar hydrolysis domain PP4_RS16965 d68a160ea1844dfdc08eaf6b2e063980 301 Pfam PF06719 AraC-type transcriptional regulator N-terminus 31 182 1.1E-36 T 22-04-2016 IPR009594 Transcription regulator HTH, AraC, N-terminal PP4_RS16965 d68a160ea1844dfdc08eaf6b2e063980 301 Pfam PF12833 Helix-turn-helix domain 217 292 1.7E-21 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS16965 d68a160ea1844dfdc08eaf6b2e063980 301 SMART SM00342 211 294 4.0E-23 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS16965 d68a160ea1844dfdc08eaf6b2e063980 301 PANTHER PTHR11019:SF134 16 293 1.0E-67 T 22-04-2016 PP4_RS16965 d68a160ea1844dfdc08eaf6b2e063980 301 PANTHER PTHR11019 16 293 1.0E-67 T 22-04-2016 PP4_RS16965 d68a160ea1844dfdc08eaf6b2e063980 301 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 248 290 - T 22-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PP4_RS16965 d68a160ea1844dfdc08eaf6b2e063980 301 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 196 240 - T 22-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PP4_RS16965 d68a160ea1844dfdc08eaf6b2e063980 301 Gene3D G3DSA:1.10.10.60 248 292 2.9E-9 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS16965 d68a160ea1844dfdc08eaf6b2e063980 301 Gene3D G3DSA:1.10.10.60 194 247 4.1E-17 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS16965 d68a160ea1844dfdc08eaf6b2e063980 301 SUPERFAMILY SSF46689 247 293 1.61E-8 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS16965 d68a160ea1844dfdc08eaf6b2e063980 301 SUPERFAMILY SSF46689 194 245 4.94E-13 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS18520 90bb69a17b41ac09e809b8c5e45ef559 336 PIRSF PIRSF006621 10 335 2.2E-75 T 22-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 PP4_RS18520 90bb69a17b41ac09e809b8c5e45ef559 336 PANTHER PTHR11082:SF29 10 333 6.4E-145 T 22-04-2016 PP4_RS18520 90bb69a17b41ac09e809b8c5e45ef559 336 Pfam PF01207 Dihydrouridine synthase (Dus) 22 325 1.6E-85 T 22-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 PP4_RS18520 90bb69a17b41ac09e809b8c5e45ef559 336 Hamap MF_02041 tRNA-dihydrouridine(20/20a) synthase [dusA]. 14 335 50.721 T 22-04-2016 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 PP4_RS18520 90bb69a17b41ac09e809b8c5e45ef559 336 PANTHER PTHR11082 10 333 6.4E-145 T 22-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 PP4_RS18520 90bb69a17b41ac09e809b8c5e45ef559 336 SUPERFAMILY SSF51395 19 330 2.31E-74 T 22-04-2016 PP4_RS18520 90bb69a17b41ac09e809b8c5e45ef559 336 TIGRFAM TIGR00742 yjbN: tRNA dihydrouridine synthase A 18 333 1.1E-137 T 22-04-2016 IPR004653 tRNA-dihydrouridine(20/20a) synthase GO:0002943|GO:0017150 PP4_RS18520 90bb69a17b41ac09e809b8c5e45ef559 336 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 101 119 - T 22-04-2016 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 PP4_RS18520 90bb69a17b41ac09e809b8c5e45ef559 336 Gene3D G3DSA:3.20.20.70 18 261 1.9E-75 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS19940 bdbef6d1479fbbdc16ad490565ebf062 181 SUPERFAMILY SSF55620 3 181 2.22E-78 T 22-04-2016 PP4_RS19940 bdbef6d1479fbbdc16ad490565ebf062 181 PANTHER PTHR11109 2 181 2.3E-113 T 22-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 PP4_RS19940 bdbef6d1479fbbdc16ad490565ebf062 181 Pfam PF01227 GTP cyclohydrolase I 4 180 4.8E-77 T 22-04-2016 IPR020602 GTP cyclohydrolase I domain KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 PP4_RS19940 bdbef6d1479fbbdc16ad490565ebf062 181 TIGRFAM TIGR00063 folE: GTP cyclohydrolase I 4 181 4.8E-78 T 22-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 PP4_RS19940 bdbef6d1479fbbdc16ad490565ebf062 181 ProSitePatterns PS00860 GTP cyclohydrolase I signature 2. 108 118 - T 22-04-2016 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 PP4_RS19940 bdbef6d1479fbbdc16ad490565ebf062 181 Hamap MF_00223 GTP cyclohydrolase 1 [folE]. 1 181 37.18 T 22-04-2016 IPR001474 GTP cyclohydrolase I GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 PP4_RS19940 bdbef6d1479fbbdc16ad490565ebf062 181 Gene3D G3DSA:3.30.1130.10 53 181 1.7E-63 T 22-04-2016 PP4_RS19940 bdbef6d1479fbbdc16ad490565ebf062 181 ProSitePatterns PS00859 GTP cyclohydrolase I signature 1. 60 76 - T 22-04-2016 IPR018234 GTP cyclohydrolase I, conserved site GO:0003934|GO:0005737|GO:0046654 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 PP4_RS19940 bdbef6d1479fbbdc16ad490565ebf062 181 Gene3D G3DSA:1.10.286.10 3 50 8.1E-21 T 22-04-2016 PP4_RS13490 7b519e085ba2905a6efcde8bccb636dd 689 SMART SM00086 235 277 14.0 T 22-04-2016 IPR001610 PAC motif PP4_RS13490 7b519e085ba2905a6efcde8bccb636dd 689 SMART SM00086 107 149 3.1E-6 T 22-04-2016 IPR001610 PAC motif PP4_RS13490 7b519e085ba2905a6efcde8bccb636dd 689 PANTHER PTHR24423:SF438 30 292 1.2E-164 T 22-04-2016 PP4_RS13490 7b519e085ba2905a6efcde8bccb636dd 689 PANTHER PTHR24423:SF438 313 687 1.2E-164 T 22-04-2016 PP4_RS13490 7b519e085ba2905a6efcde8bccb636dd 689 Pfam PF08448 PAS fold 169 278 1.4E-19 T 22-04-2016 IPR013656 PAS fold-4 PP4_RS13490 7b519e085ba2905a6efcde8bccb636dd 689 Pfam PF08447 PAS fold 54 142 2.3E-18 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 PP4_RS13490 7b519e085ba2905a6efcde8bccb636dd 689 Gene3D G3DSA:3.30.565.10 373 548 2.3E-32 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS13490 7b519e085ba2905a6efcde8bccb636dd 689 SUPERFAMILY SSF47384 304 382 1.55E-10 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS13490 7b519e085ba2905a6efcde8bccb636dd 689 Pfam PF00072 Response regulator receiver domain 572 682 1.3E-14 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS13490 7b519e085ba2905a6efcde8bccb636dd 689 PRINTS PR00344 Bacterial sensor protein C-terminal signature 495 505 3.4E-14 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS13490 7b519e085ba2905a6efcde8bccb636dd 689 PRINTS PR00344 Bacterial sensor protein C-terminal signature 477 491 3.4E-14 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS13490 7b519e085ba2905a6efcde8bccb636dd 689 PRINTS PR00344 Bacterial sensor protein C-terminal signature 508 526 3.4E-14 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS13490 7b519e085ba2905a6efcde8bccb636dd 689 PRINTS PR00344 Bacterial sensor protein C-terminal signature 532 545 3.4E-14 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS13490 7b519e085ba2905a6efcde8bccb636dd 689 SUPERFAMILY SSF55785 145 269 4.89E-17 T 22-04-2016 IPR000014 PAS domain PP4_RS13490 7b519e085ba2905a6efcde8bccb636dd 689 SMART SM00387 426 548 1.3E-20 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS13490 7b519e085ba2905a6efcde8bccb636dd 689 SMART SM00388 317 385 1.3E-7 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS13490 7b519e085ba2905a6efcde8bccb636dd 689 PANTHER PTHR24423 30 292 1.2E-164 T 22-04-2016 PP4_RS13490 7b519e085ba2905a6efcde8bccb636dd 689 PANTHER PTHR24423 313 687 1.2E-164 T 22-04-2016 PP4_RS13490 7b519e085ba2905a6efcde8bccb636dd 689 Pfam PF00512 His Kinase A (phospho-acceptor) domain 318 383 4.8E-8 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS13490 7b519e085ba2905a6efcde8bccb636dd 689 Gene3D G3DSA:3.40.50.2300 568 688 4.8E-32 T 22-04-2016 PP4_RS13490 7b519e085ba2905a6efcde8bccb636dd 689 SMART SM00448 570 683 1.8E-18 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS13490 7b519e085ba2905a6efcde8bccb636dd 689 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 431 546 1.4E-13 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS13490 7b519e085ba2905a6efcde8bccb636dd 689 SUPERFAMILY SSF55785 42 150 1.54E-19 T 22-04-2016 IPR000014 PAS domain PP4_RS13490 7b519e085ba2905a6efcde8bccb636dd 689 SUPERFAMILY SSF55874 376 546 2.62E-33 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS13490 7b519e085ba2905a6efcde8bccb636dd 689 Gene3D G3DSA:3.30.450.20 31 158 8.9E-24 T 22-04-2016 PP4_RS13490 7b519e085ba2905a6efcde8bccb636dd 689 SUPERFAMILY SSF52172 569 688 3.56E-26 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS13490 7b519e085ba2905a6efcde8bccb636dd 689 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 161 284 2.7E-7 T 22-04-2016 IPR000014 PAS domain PP4_RS13490 7b519e085ba2905a6efcde8bccb636dd 689 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 43 155 8.8E-8 T 22-04-2016 IPR000014 PAS domain PP4_RS13490 7b519e085ba2905a6efcde8bccb636dd 689 Gene3D G3DSA:1.10.287.130 310 372 1.5E-5 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS13490 7b519e085ba2905a6efcde8bccb636dd 689 Gene3D G3DSA:3.30.450.20 159 275 8.5E-16 T 22-04-2016 PP4_RS13490 7b519e085ba2905a6efcde8bccb636dd 689 SMART SM00091 30 101 5.8E-4 T 22-04-2016 IPR000014 PAS domain PP4_RS13490 7b519e085ba2905a6efcde8bccb636dd 689 SMART SM00091 161 228 0.0017 T 22-04-2016 IPR000014 PAS domain PP4_RS05020 9fe308dfb70f5d4088be360345899160 460 SMART SM00387 349 460 1.2E-38 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS05020 9fe308dfb70f5d4088be360345899160 460 SUPERFAMILY SSF47384 223 305 5.69E-16 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS05020 9fe308dfb70f5d4088be360345899160 460 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 353 459 5.8E-23 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS05020 9fe308dfb70f5d4088be360345899160 460 TIGRFAM TIGR01386 cztS_silS_copS: heavy metal sensor kinase 4 458 3.3E-138 T 22-04-2016 IPR006290 Heavy metal sensor kinase GO:0000160|GO:0004673|GO:0016020 PP4_RS05020 9fe308dfb70f5d4088be360345899160 460 SUPERFAMILY SSF158472 189 236 1.09E-6 T 22-04-2016 PP4_RS05020 9fe308dfb70f5d4088be360345899160 460 SMART SM00388 240 306 3.5E-14 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS05020 9fe308dfb70f5d4088be360345899160 460 PANTHER PTHR24423 180 460 1.7E-87 T 22-04-2016 PP4_RS05020 9fe308dfb70f5d4088be360345899160 460 PANTHER PTHR24423 3 14 1.7E-87 T 22-04-2016 PP4_RS05020 9fe308dfb70f5d4088be360345899160 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 404 414 5.1E-14 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS05020 9fe308dfb70f5d4088be360345899160 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 421 439 5.1E-14 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS05020 9fe308dfb70f5d4088be360345899160 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 445 458 5.1E-14 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS05020 9fe308dfb70f5d4088be360345899160 460 PRINTS PR00344 Bacterial sensor protein C-terminal signature 386 400 5.1E-14 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS05020 9fe308dfb70f5d4088be360345899160 460 SUPERFAMILY SSF55874 295 458 3.27E-41 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS05020 9fe308dfb70f5d4088be360345899160 460 Pfam PF00512 His Kinase A (phospho-acceptor) domain 241 302 4.4E-13 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS05020 9fe308dfb70f5d4088be360345899160 460 Pfam PF00672 HAMP domain 167 235 1.1E-12 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS05020 9fe308dfb70f5d4088be360345899160 460 Gene3D G3DSA:1.10.287.130 230 292 4.2E-11 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS05020 9fe308dfb70f5d4088be360345899160 460 PANTHER PTHR24423:SF354 180 460 1.7E-87 T 22-04-2016 PP4_RS05020 9fe308dfb70f5d4088be360345899160 460 PANTHER PTHR24423:SF354 3 14 1.7E-87 T 22-04-2016 PP4_RS05020 9fe308dfb70f5d4088be360345899160 460 SMART SM00304 186 239 3.6E-10 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS05020 9fe308dfb70f5d4088be360345899160 460 Gene3D G3DSA:3.30.565.10 293 459 3.0E-39 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS00530 bb0bd92cc61ca044e15c65baa330ba74 714 Gene3D G3DSA:2.40.180.10 25 400 1.5E-183 T 22-04-2016 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS00530 bb0bd92cc61ca044e15c65baa330ba74 714 ProSitePatterns PS00438 Catalase proximal active site signature. 81 97 - T 22-04-2016 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS00530 bb0bd92cc61ca044e15c65baa330ba74 714 Pfam PF06628 Catalase-related immune-responsive 462 527 8.2E-20 T 22-04-2016 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS00530 bb0bd92cc61ca044e15c65baa330ba74 714 SMART SM01060 45 433 3.6E-276 T 22-04-2016 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS00530 bb0bd92cc61ca044e15c65baa330ba74 714 PANTHER PTHR11465 24 597 0.0 T 22-04-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS00530 bb0bd92cc61ca044e15c65baa330ba74 714 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 375 383 - T 22-04-2016 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS00530 bb0bd92cc61ca044e15c65baa330ba74 714 SUPERFAMILY SSF56634 25 534 3.53E-221 T 22-04-2016 IPR020835 Catalase-like domain GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS00530 bb0bd92cc61ca044e15c65baa330ba74 714 SUPERFAMILY SSF52317 561 708 3.48E-19 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS00530 bb0bd92cc61ca044e15c65baa330ba74 714 PIRSF PIRSF038927 6 712 0.0 T 22-04-2016 IPR024712 Catalase, mono-functional, haem-containing, clade 2 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS00530 bb0bd92cc61ca044e15c65baa330ba74 714 PRINTS PR00067 Catalase signature 58 81 1.3E-69 T 22-04-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS00530 bb0bd92cc61ca044e15c65baa330ba74 714 PRINTS PR00067 Catalase signature 142 159 1.3E-69 T 22-04-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS00530 bb0bd92cc61ca044e15c65baa330ba74 714 PRINTS PR00067 Catalase signature 330 357 1.3E-69 T 22-04-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS00530 bb0bd92cc61ca044e15c65baa330ba74 714 PRINTS PR00067 Catalase signature 362 388 1.3E-69 T 22-04-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS00530 bb0bd92cc61ca044e15c65baa330ba74 714 PRINTS PR00067 Catalase signature 121 139 1.3E-69 T 22-04-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS00530 bb0bd92cc61ca044e15c65baa330ba74 714 PRINTS PR00067 Catalase signature 161 179 1.3E-69 T 22-04-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS00530 bb0bd92cc61ca044e15c65baa330ba74 714 PANTHER PTHR11465:SF7 24 597 0.0 T 22-04-2016 PP4_RS00530 bb0bd92cc61ca044e15c65baa330ba74 714 Gene3D G3DSA:3.40.50.880 563 714 6.6E-47 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS00530 bb0bd92cc61ca044e15c65baa330ba74 714 Pfam PF00199 Catalase 46 430 2.4E-179 T 22-04-2016 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS27435 3b86dbed25e4845e23cebb5b34028d10 560 PRINTS PR00701 60kDa inner membrane protein signature 268 283 1.7E-101 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 PP4_RS27435 3b86dbed25e4845e23cebb5b34028d10 560 PRINTS PR00701 60kDa inner membrane protein signature 179 199 1.7E-101 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 PP4_RS27435 3b86dbed25e4845e23cebb5b34028d10 560 PRINTS PR00701 60kDa inner membrane protein signature 432 455 1.7E-101 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 PP4_RS27435 3b86dbed25e4845e23cebb5b34028d10 560 PRINTS PR00701 60kDa inner membrane protein signature 479 501 1.7E-101 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 PP4_RS27435 3b86dbed25e4845e23cebb5b34028d10 560 PRINTS PR00701 60kDa inner membrane protein signature 88 109 1.7E-101 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 PP4_RS27435 3b86dbed25e4845e23cebb5b34028d10 560 PRINTS PR00701 60kDa inner membrane protein signature 515 538 1.7E-101 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 PP4_RS27435 3b86dbed25e4845e23cebb5b34028d10 560 PRINTS PR00701 60kDa inner membrane protein signature 235 253 1.7E-101 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 PP4_RS27435 3b86dbed25e4845e23cebb5b34028d10 560 PRINTS PR00701 60kDa inner membrane protein signature 341 361 1.7E-101 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 PP4_RS27435 3b86dbed25e4845e23cebb5b34028d10 560 PRINTS PR00701 60kDa inner membrane protein signature 2 23 1.7E-101 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 PP4_RS27435 3b86dbed25e4845e23cebb5b34028d10 560 Pfam PF02096 60Kd inner membrane protein 371 549 8.2E-62 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 PP4_RS27435 3b86dbed25e4845e23cebb5b34028d10 560 TIGRFAM TIGR03593 yidC_nterm: membrane protein insertase, YidC/Oxa1 family, N-terminal domain 4 369 3.0E-112 T 22-04-2016 IPR028053 Membrane insertase YidC, N-terminal PP4_RS27435 3b86dbed25e4845e23cebb5b34028d10 560 PRINTS PR01900 YidC translocation/secretion protein signature 356 372 4.8E-29 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 PP4_RS27435 3b86dbed25e4845e23cebb5b34028d10 560 PRINTS PR01900 YidC translocation/secretion protein signature 504 528 4.8E-29 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 PP4_RS27435 3b86dbed25e4845e23cebb5b34028d10 560 PRINTS PR01900 YidC translocation/secretion protein signature 485 500 4.8E-29 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 PP4_RS27435 3b86dbed25e4845e23cebb5b34028d10 560 PANTHER PTHR12428 186 557 5.7E-132 T 22-04-2016 IPR001708 Membrane insertase OXA1/ALB3/YidC GO:0016021|GO:0051205 PP4_RS27435 3b86dbed25e4845e23cebb5b34028d10 560 Hamap MF_01810 Membrane protein insertase YidC [yidC]. 4 551 25.41 T 22-04-2016 IPR019998 Membrane insertase YidC GO:0016021|GO:0051205 PP4_RS27435 3b86dbed25e4845e23cebb5b34028d10 560 PANTHER PTHR12428:SF14 186 557 5.7E-132 T 22-04-2016 PP4_RS27435 3b86dbed25e4845e23cebb5b34028d10 560 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 370 549 8.5E-73 T 22-04-2016 IPR028055 Membrane insertase YidC/Oxa1, C-terminal PP4_RS27435 3b86dbed25e4845e23cebb5b34028d10 560 Pfam PF14849 YidC periplasmic domain 83 360 2.9E-87 T 22-04-2016 IPR028053 Membrane insertase YidC, N-terminal PP4_RS01860 3832382cb6b30c57d983fa3be2caea83 222 PANTHER PTHR10173 1 210 2.0E-99 T 22-04-2016 IPR028427 Peptide methionine sulfoxide reductase GO:0006979|GO:0016671|GO:0030091 PP4_RS01860 3832382cb6b30c57d983fa3be2caea83 222 PANTHER PTHR10173:SF36 1 210 2.0E-99 T 22-04-2016 PP4_RS01860 3832382cb6b30c57d983fa3be2caea83 222 Pfam PF01625 Peptide methionine sulfoxide reductase 54 206 1.6E-64 T 22-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 PP4_RS01860 3832382cb6b30c57d983fa3be2caea83 222 Hamap MF_01401 Peptide methionine sulfoxide reductase MsrA [msrA]. 51 212 36.84 T 22-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 PP4_RS01860 3832382cb6b30c57d983fa3be2caea83 222 TIGRFAM TIGR00401 msrA: peptide-methionine (S)-S-oxide reductase 54 206 1.8E-63 T 22-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 PP4_RS01860 3832382cb6b30c57d983fa3be2caea83 222 Gene3D G3DSA:3.30.1060.10 13 206 3.0E-74 T 22-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 PP4_RS01860 3832382cb6b30c57d983fa3be2caea83 222 SUPERFAMILY SSF55068 9 215 2.88E-77 T 22-04-2016 IPR002569 Peptide methionine sulphoxide reductase MsrA GO:0008113|GO:0055114 PP4_RS14490 86f9cac7f714a98ba09b210f5ab055cf 528 Pfam PF12848 ABC transporter 224 298 7.4E-21 T 22-04-2016 IPR032781 ABC-transporter extension domain PP4_RS14490 86f9cac7f714a98ba09b210f5ab055cf 528 Pfam PF00005 ABC transporter 18 184 1.0E-19 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS14490 86f9cac7f714a98ba09b210f5ab055cf 528 Pfam PF00005 ABC transporter 336 464 4.1E-21 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS14490 86f9cac7f714a98ba09b210f5ab055cf 528 SUPERFAMILY SSF52540 297 525 7.37E-45 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS14490 86f9cac7f714a98ba09b210f5ab055cf 528 SMART SM00382 344 509 1.2E-13 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS14490 86f9cac7f714a98ba09b210f5ab055cf 528 SMART SM00382 26 245 1.6E-10 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS14490 86f9cac7f714a98ba09b210f5ab055cf 528 Gene3D G3DSA:3.40.50.300 2 270 2.1E-47 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS14490 86f9cac7f714a98ba09b210f5ab055cf 528 PANTHER PTHR19211:SF38 1 524 0.0 T 22-04-2016 PP4_RS14490 86f9cac7f714a98ba09b210f5ab055cf 528 PANTHER PTHR19211 1 524 0.0 T 22-04-2016 PP4_RS14490 86f9cac7f714a98ba09b210f5ab055cf 528 SUPERFAMILY SSF52540 6 237 1.39E-44 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS14490 86f9cac7f714a98ba09b210f5ab055cf 528 Gene3D G3DSA:3.40.50.300 322 525 2.4E-41 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS19465 d641b8dd524fa04d113521cbd31c713c 211 Gene3D G3DSA:1.10.10.60 4 47 1.7E-17 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS19465 d641b8dd524fa04d113521cbd31c713c 211 Pfam PF13305 WHG domain 87 173 1.1E-6 T 22-04-2016 IPR025996 WHG domain PP4_RS19465 d641b8dd524fa04d113521cbd31c713c 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 1.5E-10 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS19465 d641b8dd524fa04d113521cbd31c713c 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 1.5E-10 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS19465 d641b8dd524fa04d113521cbd31c713c 211 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 63 5.2E-16 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS19465 d641b8dd524fa04d113521cbd31c713c 211 PANTHER PTHR30055:SF40 2 197 3.5E-66 T 22-04-2016 PP4_RS19465 d641b8dd524fa04d113521cbd31c713c 211 PANTHER PTHR30055 2 197 3.5E-66 T 22-04-2016 PP4_RS19465 d641b8dd524fa04d113521cbd31c713c 211 Gene3D G3DSA:1.10.357.10 71 190 2.8E-8 T 22-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PP4_RS19465 d641b8dd524fa04d113521cbd31c713c 211 SUPERFAMILY SSF46689 9 78 2.29E-17 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS19465 d641b8dd524fa04d113521cbd31c713c 211 Gene3D G3DSA:1.10.10.60 48 70 2.7E-7 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS19465 d641b8dd524fa04d113521cbd31c713c 211 SUPERFAMILY SSF48498 86 190 4.45E-9 T 22-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal PP4_RS19365 8d37f20842a123919145778e4f2b3748 323 PIRSF PIRSF006621 1 323 1.1E-75 T 22-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 PP4_RS19365 8d37f20842a123919145778e4f2b3748 323 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 92 110 - T 22-04-2016 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 PP4_RS19365 8d37f20842a123919145778e4f2b3748 323 SUPERFAMILY SSF51395 2 310 2.38E-69 T 22-04-2016 PP4_RS19365 8d37f20842a123919145778e4f2b3748 323 Hamap MF_02043 tRNA-dihydrouridine(16) synthase [dusC]. 8 314 52.729 T 22-04-2016 IPR032886 tRNA-dihydrouridine(16) synthase GO:0002943|GO:0017150 PP4_RS19365 8d37f20842a123919145778e4f2b3748 323 Pfam PF01207 Dihydrouridine synthase (Dus) 5 248 2.8E-62 T 22-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 PP4_RS19365 8d37f20842a123919145778e4f2b3748 323 Gene3D G3DSA:3.20.20.70 2 243 1.6E-61 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS19365 8d37f20842a123919145778e4f2b3748 323 PANTHER PTHR11082:SF26 1 311 1.4E-157 T 22-04-2016 PP4_RS19365 8d37f20842a123919145778e4f2b3748 323 PANTHER PTHR11082 1 311 1.4E-157 T 22-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 PP4_RS13500 088c1a2a9004975c6767d89d6ea010ea 395 Pfam PF07690 Major Facilitator Superfamily 17 345 1.0E-12 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS13500 088c1a2a9004975c6767d89d6ea010ea 395 Gene3D G3DSA:1.20.1250.20 211 378 1.2E-7 T 22-04-2016 PP4_RS13500 088c1a2a9004975c6767d89d6ea010ea 395 SUPERFAMILY SSF103473 11 378 1.02E-25 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS13500 088c1a2a9004975c6767d89d6ea010ea 395 Gene3D G3DSA:1.20.1250.20 11 185 1.3E-12 T 22-04-2016 PP4_RS03245 749a374f3da11b30a95e45c0ddc9839d 653 SUPERFAMILY SSF58104 352 653 4.58E-66 T 22-04-2016 PP4_RS03245 749a374f3da11b30a95e45c0ddc9839d 653 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 450 651 3.9E-43 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS03245 749a374f3da11b30a95e45c0ddc9839d 653 PANTHER PTHR32089 252 653 1.1E-93 T 22-04-2016 PP4_RS03245 749a374f3da11b30a95e45c0ddc9839d 653 Gene3D G3DSA:1.10.287.950 406 619 3.2E-52 T 22-04-2016 PP4_RS03245 749a374f3da11b30a95e45c0ddc9839d 653 SMART SM00283 391 652 7.7E-52 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS03245 749a374f3da11b30a95e45c0ddc9839d 653 PANTHER PTHR32089:SF64 252 653 1.1E-93 T 22-04-2016 PP4_RS04525 71c8547d52c064816ea357fd666400e4 198 SUPERFAMILY SSF54719 82 192 4.84E-45 T 22-04-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PP4_RS04525 71c8547d52c064816ea357fd666400e4 198 SUPERFAMILY SSF46609 1 84 9.43E-36 T 22-04-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PP4_RS04525 71c8547d52c064816ea357fd666400e4 198 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 3 82 2.0E-35 T 22-04-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PP4_RS04525 71c8547d52c064816ea357fd666400e4 198 PIRSF PIRSF000349 1 198 2.5E-86 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PP4_RS04525 71c8547d52c064816ea357fd666400e4 198 PANTHER PTHR11404:SF8 1 192 9.0E-113 T 22-04-2016 PP4_RS04525 71c8547d52c064816ea357fd666400e4 198 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 157 164 - T 22-04-2016 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PP4_RS04525 71c8547d52c064816ea357fd666400e4 198 PRINTS PR01703 Manganese superoxide dismutase signature 155 167 1.9E-23 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PP4_RS04525 71c8547d52c064816ea357fd666400e4 198 PRINTS PR01703 Manganese superoxide dismutase signature 65 78 1.9E-23 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PP4_RS04525 71c8547d52c064816ea357fd666400e4 198 PRINTS PR01703 Manganese superoxide dismutase signature 118 126 1.9E-23 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PP4_RS04525 71c8547d52c064816ea357fd666400e4 198 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 1.9E-23 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PP4_RS04525 71c8547d52c064816ea357fd666400e4 198 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 1.9E-23 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PP4_RS04525 71c8547d52c064816ea357fd666400e4 198 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 89 189 6.0E-39 T 22-04-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PP4_RS04525 71c8547d52c064816ea357fd666400e4 198 Gene3D G3DSA:1.10.287.990 20 82 2.0E-25 T 22-04-2016 PP4_RS04525 71c8547d52c064816ea357fd666400e4 198 PANTHER PTHR11404 1 192 9.0E-113 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PP4_RS26300 9e246dd3a4ed7d41b96143a282e9c536 409 Gene3D G3DSA:3.40.50.720 120 297 8.1E-58 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS26300 9e246dd3a4ed7d41b96143a282e9c536 409 Gene3D G3DSA:3.40.50.720 8 119 1.2E-35 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS26300 9e246dd3a4ed7d41b96143a282e9c536 409 PANTHER PTHR10996 1 369 4.2E-238 T 22-04-2016 PP4_RS26300 9e246dd3a4ed7d41b96143a282e9c536 409 SUPERFAMILY SSF52283 7 136 4.46E-50 T 22-04-2016 PP4_RS26300 9e246dd3a4ed7d41b96143a282e9c536 409 SUPERFAMILY SSF55021 332 408 3.27E-17 T 22-04-2016 PP4_RS26300 9e246dd3a4ed7d41b96143a282e9c536 409 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 14 326 8.3E-38 T 22-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 PP4_RS26300 9e246dd3a4ed7d41b96143a282e9c536 409 PANTHER PTHR10996:SF18 1 369 4.2E-238 T 22-04-2016 IPR029015 D-3-phosphoglycerate dehydrogenase, type2 GO:0004617|GO:0006564 KEGG: 00260+1.1.1.95|KEGG: 00680+1.1.1.95|UniPathway: UPA00135 PP4_RS26300 9e246dd3a4ed7d41b96143a282e9c536 409 SUPERFAMILY SSF51735 108 295 1.66E-54 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS26300 9e246dd3a4ed7d41b96143a282e9c536 409 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 229 245 - T 22-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site PP4_RS26300 9e246dd3a4ed7d41b96143a282e9c536 409 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 200 222 - T 22-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site PP4_RS26300 9e246dd3a4ed7d41b96143a282e9c536 409 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 119 294 3.4E-49 T 22-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 PP4_RS26300 9e246dd3a4ed7d41b96143a282e9c536 409 Gene3D G3DSA:3.30.70.260 324 408 7.7E-27 T 22-04-2016 PP4_RS26300 9e246dd3a4ed7d41b96143a282e9c536 409 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 154 181 - T 22-04-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 PP4_RS25270 450fe909e481808d8e68889b9976b43c 600 SUPERFAMILY SSF56645 36 271 1.1E-51 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 PP4_RS25270 450fe909e481808d8e68889b9976b43c 600 SUPERFAMILY SSF47203 289 460 1.29E-39 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS25270 450fe909e481808d8e68889b9976b43c 600 Gene3D G3DSA:2.40.110.10 160 269 7.7E-25 T 22-04-2016 PP4_RS25270 450fe909e481808d8e68889b9976b43c 600 PANTHER PTHR10909 1 374 4.1E-264 T 22-04-2016 PP4_RS25270 450fe909e481808d8e68889b9976b43c 600 PANTHER PTHR10909 391 477 4.1E-264 T 22-04-2016 PP4_RS25270 450fe909e481808d8e68889b9976b43c 600 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 40 156 9.4E-11 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS25270 450fe909e481808d8e68889b9976b43c 600 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 285 452 5.9E-17 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS25270 450fe909e481808d8e68889b9976b43c 600 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 470 596 7.2E-33 T 22-04-2016 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain PP4_RS25270 450fe909e481808d8e68889b9976b43c 600 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 7 34 1.0E-7 T 22-04-2016 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria PP4_RS25270 450fe909e481808d8e68889b9976b43c 600 Gene3D G3DSA:1.20.140.10 270 462 9.8E-46 T 22-04-2016 PP4_RS25270 450fe909e481808d8e68889b9976b43c 600 PANTHER PTHR10909:SF269 1 374 4.1E-264 T 22-04-2016 PP4_RS25270 450fe909e481808d8e68889b9976b43c 600 PANTHER PTHR10909:SF269 391 477 4.1E-264 T 22-04-2016 PP4_RS25270 450fe909e481808d8e68889b9976b43c 600 Gene3D G3DSA:1.10.540.10 32 157 3.6E-17 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS25270 450fe909e481808d8e68889b9976b43c 600 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 162 271 4.1E-14 T 22-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 PP4_RS00600 687e4007a77eb87706b8d66e0a4d8d8d 641 Pfam PF00990 Diguanylate cyclase, GGDEF domain 481 637 9.6E-47 T 22-04-2016 IPR000160 GGDEF domain PP4_RS00600 687e4007a77eb87706b8d66e0a4d8d8d 641 SUPERFAMILY SSF55073 486 639 1.02E-49 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS00600 687e4007a77eb87706b8d66e0a4d8d8d 641 SMART SM00267 470 641 2.0E-59 T 22-04-2016 IPR000160 GGDEF domain PP4_RS00600 687e4007a77eb87706b8d66e0a4d8d8d 641 PANTHER PTHR10799 423 641 2.3E-31 T 22-04-2016 PP4_RS00600 687e4007a77eb87706b8d66e0a4d8d8d 641 Gene3D G3DSA:3.30.70.270 484 639 1.2E-55 T 22-04-2016 PP4_RS00600 687e4007a77eb87706b8d66e0a4d8d8d 641 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 479 639 3.3E-48 T 22-04-2016 IPR000160 GGDEF domain PP4_RS00600 687e4007a77eb87706b8d66e0a4d8d8d 641 PANTHER PTHR10799:SF710 423 641 2.3E-31 T 22-04-2016 PP4_RS16960 e0cb5acb52a21b909cd046636ace2a76 351 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 62 76 - T 22-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 PP4_RS16960 e0cb5acb52a21b909cd046636ace2a76 351 PANTHER PTHR11695:SF582 16 346 2.9E-156 T 22-04-2016 PP4_RS16960 e0cb5acb52a21b909cd046636ace2a76 351 PANTHER PTHR11695 16 346 2.9E-156 T 22-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PP4_RS16960 e0cb5acb52a21b909cd046636ace2a76 351 SUPERFAMILY SSF51735 149 313 1.54E-42 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS16960 e0cb5acb52a21b909cd046636ace2a76 351 Gene3D G3DSA:3.90.180.10 6 180 8.1E-60 T 22-04-2016 IPR011032 GroES-like PP4_RS16960 e0cb5acb52a21b909cd046636ace2a76 351 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 179 206 - T 22-04-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 PP4_RS16960 e0cb5acb52a21b909cd046636ace2a76 351 Pfam PF00107 Zinc-binding dehydrogenase 186 309 5.3E-21 T 22-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 PP4_RS16960 e0cb5acb52a21b909cd046636ace2a76 351 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 144 3.7E-25 T 22-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 PP4_RS16960 e0cb5acb52a21b909cd046636ace2a76 351 SUPERFAMILY SSF50129 11 173 5.48E-49 T 22-04-2016 IPR011032 GroES-like PP4_RS16960 e0cb5acb52a21b909cd046636ace2a76 351 SMART SM00829 11 343 4.2E-6 T 22-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 PP4_RS16960 e0cb5acb52a21b909cd046636ace2a76 351 Gene3D G3DSA:3.40.50.720 181 293 5.1E-23 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS08220 1daeb6b23086bdf56f7d4c46d5eaba9e 476 SUPERFAMILY SSF53955 116 275 3.37E-42 T 22-04-2016 IPR023346 Lysozyme-like domain PP4_RS08220 1daeb6b23086bdf56f7d4c46d5eaba9e 476 SUPERFAMILY SSF54106 366 408 2.22E-9 T 22-04-2016 IPR018392 LysM domain PP4_RS08220 1daeb6b23086bdf56f7d4c46d5eaba9e 476 Pfam PF06474 MltD lipid attachment motif 1 34 1.7E-15 T 22-04-2016 IPR010511 Lytic murein transglycosylase D , lipid attachment domain PP4_RS08220 1daeb6b23086bdf56f7d4c46d5eaba9e 476 SMART SM00257 366 409 1.6E-10 T 22-04-2016 IPR018392 LysM domain PP4_RS08220 1daeb6b23086bdf56f7d4c46d5eaba9e 476 SMART SM00257 430 473 6.8E-8 T 22-04-2016 IPR018392 LysM domain PP4_RS08220 1daeb6b23086bdf56f7d4c46d5eaba9e 476 Gene3D G3DSA:1.10.530.10 113 274 8.1E-49 T 22-04-2016 PP4_RS08220 1daeb6b23086bdf56f7d4c46d5eaba9e 476 SUPERFAMILY SSF54106 429 473 2.75E-10 T 22-04-2016 IPR018392 LysM domain PP4_RS08220 1daeb6b23086bdf56f7d4c46d5eaba9e 476 Pfam PF01476 LysM domain 367 406 3.4E-10 T 22-04-2016 IPR018392 LysM domain PP4_RS08220 1daeb6b23086bdf56f7d4c46d5eaba9e 476 Pfam PF01476 LysM domain 431 472 4.8E-8 T 22-04-2016 IPR018392 LysM domain PP4_RS08220 1daeb6b23086bdf56f7d4c46d5eaba9e 476 Gene3D G3DSA:3.10.350.10 429 473 9.9E-16 T 22-04-2016 IPR018392 LysM domain PP4_RS08220 1daeb6b23086bdf56f7d4c46d5eaba9e 476 Gene3D G3DSA:3.10.350.10 365 408 9.8E-16 T 22-04-2016 IPR018392 LysM domain PP4_RS08220 1daeb6b23086bdf56f7d4c46d5eaba9e 476 PANTHER PTHR21666 70 348 1.5E-146 T 22-04-2016 PP4_RS08220 1daeb6b23086bdf56f7d4c46d5eaba9e 476 PANTHER PTHR21666 367 475 1.5E-146 T 22-04-2016 PP4_RS08220 1daeb6b23086bdf56f7d4c46d5eaba9e 476 PANTHER PTHR21666:SF206 70 348 1.5E-146 T 22-04-2016 PP4_RS08220 1daeb6b23086bdf56f7d4c46d5eaba9e 476 PANTHER PTHR21666:SF206 367 475 1.5E-146 T 22-04-2016 PP4_RS08220 1daeb6b23086bdf56f7d4c46d5eaba9e 476 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 136 164 - T 22-04-2016 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 PP4_RS08220 1daeb6b23086bdf56f7d4c46d5eaba9e 476 Pfam PF01464 Transglycosylase SLT domain 128 225 4.5E-25 T 22-04-2016 IPR008258 Transglycosylase SLT domain 1 PP4_RS03690 da6b4c253358913f77f66b6de86dde31 392 Pfam PF00108 Thiolase, N-terminal domain 4 262 1.1E-108 T 22-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 PP4_RS03690 da6b4c253358913f77f66b6de86dde31 392 PIRSF PIRSF000429 1 392 3.0E-134 T 22-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 PP4_RS03690 da6b4c253358913f77f66b6de86dde31 392 SUPERFAMILY SSF53901 273 392 2.98E-41 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS03690 da6b4c253358913f77f66b6de86dde31 392 Pfam PF02803 Thiolase, C-terminal domain 271 392 3.6E-51 T 22-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 PP4_RS03690 da6b4c253358913f77f66b6de86dde31 392 Gene3D G3DSA:3.40.47.10 194 276 1.6E-82 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS03690 da6b4c253358913f77f66b6de86dde31 392 Gene3D G3DSA:3.40.47.10 3 123 1.6E-82 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS03690 da6b4c253358913f77f66b6de86dde31 392 ProSitePatterns PS00099 Thiolases active site. 374 387 - T 22-04-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 PP4_RS03690 da6b4c253358913f77f66b6de86dde31 392 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 84 102 - T 22-04-2016 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Reactome: REACT_22258 PP4_RS03690 da6b4c253358913f77f66b6de86dde31 392 PANTHER PTHR18919:SF95 1 392 6.9E-237 T 22-04-2016 PP4_RS03690 da6b4c253358913f77f66b6de86dde31 392 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 391 6.6E-148 T 22-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 PP4_RS03690 da6b4c253358913f77f66b6de86dde31 392 ProSitePatterns PS00737 Thiolases signature 2. 339 355 - T 22-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 PP4_RS03690 da6b4c253358913f77f66b6de86dde31 392 PANTHER PTHR18919 1 392 6.9E-237 T 22-04-2016 PP4_RS03690 da6b4c253358913f77f66b6de86dde31 392 SUPERFAMILY SSF53901 3 270 1.11E-93 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS03690 da6b4c253358913f77f66b6de86dde31 392 Gene3D G3DSA:3.40.47.10 277 391 4.5E-67 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS03690 da6b4c253358913f77f66b6de86dde31 392 Gene3D G3DSA:3.40.47.10 142 193 4.5E-67 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS05395 dfafbf75cd98ad9caa31e432be692f96 230 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 211 230 5.2E-7 T 22-04-2016 PP4_RS05395 dfafbf75cd98ad9caa31e432be692f96 230 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 113 140 5.2E-7 T 22-04-2016 PP4_RS05395 dfafbf75cd98ad9caa31e432be692f96 230 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 172 189 5.2E-7 T 22-04-2016 PP4_RS05395 dfafbf75cd98ad9caa31e432be692f96 230 Pfam PF00691 OmpA family 126 222 1.0E-24 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS05395 dfafbf75cd98ad9caa31e432be692f96 230 PANTHER PTHR30128:SF10 73 229 3.2E-41 T 22-04-2016 PP4_RS05395 dfafbf75cd98ad9caa31e432be692f96 230 SUPERFAMILY SSF103647 70 101 9.55E-9 T 22-04-2016 IPR028974 TSP type-3 repeat GO:0005509 PP4_RS05395 dfafbf75cd98ad9caa31e432be692f96 230 Gene3D G3DSA:4.10.1080.10 72 99 5.6E-5 T 22-04-2016 IPR028974 TSP type-3 repeat GO:0005509 PP4_RS05395 dfafbf75cd98ad9caa31e432be692f96 230 PANTHER PTHR30128 73 229 3.2E-41 T 22-04-2016 PP4_RS05395 dfafbf75cd98ad9caa31e432be692f96 230 SUPERFAMILY SSF103088 100 228 2.88E-35 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS05395 dfafbf75cd98ad9caa31e432be692f96 230 PRINTS PR01021 OMPA domain signature 157 172 4.3E-17 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PP4_RS05395 dfafbf75cd98ad9caa31e432be692f96 230 PRINTS PR01021 OMPA domain signature 126 148 4.3E-17 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PP4_RS05395 dfafbf75cd98ad9caa31e432be692f96 230 PRINTS PR01021 OMPA domain signature 172 188 4.3E-17 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PP4_RS05395 dfafbf75cd98ad9caa31e432be692f96 230 Gene3D G3DSA:3.30.1330.60 111 228 6.7E-39 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS10935 183f6095a44e81d4e8879509a2ae4f0e 511 Gene3D G3DSA:3.40.50.300 3 223 1.9E-56 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS10935 183f6095a44e81d4e8879509a2ae4f0e 511 Gene3D G3DSA:3.40.50.300 261 501 3.8E-43 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS10935 183f6095a44e81d4e8879509a2ae4f0e 511 ProSitePatterns PS00211 ABC transporters family signature. 409 423 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS10935 183f6095a44e81d4e8879509a2ae4f0e 511 SMART SM00382 30 220 7.5E-12 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS10935 183f6095a44e81d4e8879509a2ae4f0e 511 SMART SM00382 289 485 3.3E-7 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS10935 183f6095a44e81d4e8879509a2ae4f0e 511 SUPERFAMILY SSF52540 249 496 1.33E-41 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS10935 183f6095a44e81d4e8879509a2ae4f0e 511 SUPERFAMILY SSF52540 5 226 5.21E-53 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS10935 183f6095a44e81d4e8879509a2ae4f0e 511 PANTHER PTHR24220 7 391 1.3E-168 T 22-04-2016 PP4_RS10935 183f6095a44e81d4e8879509a2ae4f0e 511 Pfam PF00005 ABC transporter 21 172 1.7E-26 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS10935 183f6095a44e81d4e8879509a2ae4f0e 511 Pfam PF00005 ABC transporter 281 436 2.0E-16 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS10935 183f6095a44e81d4e8879509a2ae4f0e 511 PANTHER PTHR24220:SF392 7 391 1.3E-168 T 22-04-2016 PP4_RS08610 94e0b171120afdd16ef78847ba22dad6 217 Pfam PF00717 Peptidase S24-like 132 199 2.1E-10 T 22-04-2016 IPR019759 Peptidase S24/S26A/S26B PP4_RS08610 94e0b171120afdd16ef78847ba22dad6 217 PANTHER PTHR33516 127 211 1.4E-12 T 22-04-2016 PP4_RS08610 94e0b171120afdd16ef78847ba22dad6 217 Gene3D G3DSA:2.10.109.10 125 214 7.5E-24 T 22-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain PP4_RS08610 94e0b171120afdd16ef78847ba22dad6 217 Pfam PF01381 Helix-turn-helix 8 48 1.2E-8 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS08610 94e0b171120afdd16ef78847ba22dad6 217 PANTHER PTHR33516:SF3 127 211 1.4E-12 T 22-04-2016 PP4_RS08610 94e0b171120afdd16ef78847ba22dad6 217 SUPERFAMILY SSF51306 125 213 1.62E-19 T 22-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C PP4_RS08610 94e0b171120afdd16ef78847ba22dad6 217 SMART SM00530 7 63 5.6E-7 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS08610 94e0b171120afdd16ef78847ba22dad6 217 SUPERFAMILY SSF47413 5 56 1.07E-11 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS08610 94e0b171120afdd16ef78847ba22dad6 217 Gene3D G3DSA:1.10.260.40 5 50 3.8E-11 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS07010 24c83e73249906ee00d80950eec5dcad 275 Pfam PF01739 CheR methyltransferase, SAM binding domain 73 269 5.0E-65 T 22-04-2016 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal PP4_RS07010 24c83e73249906ee00d80950eec5dcad 275 PIRSF PIRSF000410 2 275 2.2E-74 T 22-04-2016 IPR026024 Chemotaxis protein methyltransferase CheR PP4_RS07010 24c83e73249906ee00d80950eec5dcad 275 SUPERFAMILY SSF47757 5 72 6.8E-16 T 22-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal PP4_RS07010 24c83e73249906ee00d80950eec5dcad 275 PANTHER PTHR24422:SF9 5 275 1.5E-115 T 22-04-2016 PP4_RS07010 24c83e73249906ee00d80950eec5dcad 275 SMART SM00138 5 272 1.9E-92 T 22-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 PP4_RS07010 24c83e73249906ee00d80950eec5dcad 275 Pfam PF03705 CheR methyltransferase, all-alpha domain 7 58 1.6E-12 T 22-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal PP4_RS07010 24c83e73249906ee00d80950eec5dcad 275 PANTHER PTHR24422 5 275 1.5E-115 T 22-04-2016 PP4_RS07010 24c83e73249906ee00d80950eec5dcad 275 Gene3D G3DSA:3.40.50.150 72 270 4.9E-62 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS07010 24c83e73249906ee00d80950eec5dcad 275 PRINTS PR00996 Glutamate methyltransferase family signature 143 159 4.9E-42 T 22-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 PP4_RS07010 24c83e73249906ee00d80950eec5dcad 275 PRINTS PR00996 Glutamate methyltransferase family signature 105 125 4.9E-42 T 22-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 PP4_RS07010 24c83e73249906ee00d80950eec5dcad 275 PRINTS PR00996 Glutamate methyltransferase family signature 212 226 4.9E-42 T 22-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 PP4_RS07010 24c83e73249906ee00d80950eec5dcad 275 PRINTS PR00996 Glutamate methyltransferase family signature 27 40 4.9E-42 T 22-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 PP4_RS07010 24c83e73249906ee00d80950eec5dcad 275 PRINTS PR00996 Glutamate methyltransferase family signature 66 78 4.9E-42 T 22-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 PP4_RS07010 24c83e73249906ee00d80950eec5dcad 275 PRINTS PR00996 Glutamate methyltransferase family signature 231 254 4.9E-42 T 22-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 PP4_RS07010 24c83e73249906ee00d80950eec5dcad 275 SUPERFAMILY SSF53335 73 266 7.62E-46 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS07010 24c83e73249906ee00d80950eec5dcad 275 Gene3D G3DSA:1.10.155.10 7 71 2.9E-14 T 22-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Gene3D G3DSA:2.30.38.10 814 892 8.2E-25 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Gene3D G3DSA:2.30.38.10 3839 3916 5.1E-23 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Gene3D G3DSA:2.30.38.10 5343 5421 4.3E-24 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Gene3D G3DSA:2.30.38.10 2325 2404 2.9E-23 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Pfam PF00501 AMP-binding enzyme 3531 3927 5.9E-97 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Pfam PF00501 AMP-binding enzyme 5036 5432 6.4E-83 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Pfam PF00501 AMP-binding enzyme 513 902 7.9E-91 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Pfam PF00501 AMP-binding enzyme 2016 2414 5.7E-95 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 SUPERFAMILY SSF56801 470 1031 1.44E-151 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 SUPERFAMILY SSF52777 3078 3248 2.11E-43 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 SUPERFAMILY SSF47336 4030 4100 7.59E-17 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Gene3D G3DSA:1.10.1200.10 4042 4105 9.9E-26 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Gene3D G3DSA:1.10.1200.10 1022 1083 4.4E-25 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Gene3D G3DSA:1.10.1200.10 2534 2598 2.1E-26 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Gene3D G3DSA:1.10.1200.10 5542 5604 1.2E-23 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 SUPERFAMILY SSF52777 4297 4546 1.11E-47 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 PANTHER PTHR24095 4555 5513 0.0 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 PANTHER PTHR24095 2188 2681 0.0 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 PANTHER PTHR24095 4525 4538 0.0 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 PANTHER PTHR24095 3050 4093 0.0 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 SUPERFAMILY SSF52777 2789 3041 9.45E-43 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Pfam PF00550 Phosphopantetheine attachment site 5540 5603 3.9E-11 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Pfam PF00550 Phosphopantetheine attachment site 4039 4100 9.8E-12 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Pfam PF00550 Phosphopantetheine attachment site 2533 2593 1.7E-12 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Pfam PF00550 Phosphopantetheine attachment site 1020 1079 6.4E-12 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Pfam PF00668 Condensation domain 4578 4869 3.1E-60 T 22-04-2016 IPR001242 Condensation domain PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Pfam PF00668 Condensation domain 1558 1848 1.2E-60 T 22-04-2016 IPR001242 Condensation domain PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Pfam PF00668 Condensation domain 50 344 4.7E-81 T 22-04-2016 IPR001242 Condensation domain PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Pfam PF00668 Condensation domain 1097 1391 1.7E-60 T 22-04-2016 IPR001242 Condensation domain PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Pfam PF00668 Condensation domain 2610 2906 3.4E-62 T 22-04-2016 IPR001242 Condensation domain PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Pfam PF00668 Condensation domain 4116 4411 1.2E-63 T 22-04-2016 IPR001242 Condensation domain PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Pfam PF00668 Condensation domain 3073 3362 2.5E-58 T 22-04-2016 IPR001242 Condensation domain PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 SUPERFAMILY SSF52777 1735 1978 2.45E-52 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 SMART SM00823 Phosphopantetheine attachment site 4038 4106 0.013 T 22-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 SMART SM00823 Phosphopantetheine attachment site 2531 2599 0.0039 T 22-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 SMART SM00823 Phosphopantetheine attachment site 1018 1088 0.013 T 22-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 SUPERFAMILY SSF52777 4583 4753 1.89E-41 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Gene3D G3DSA:3.40.50.980 2178 2324 3.8E-40 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Gene3D G3DSA:3.40.50.980 3693 3838 8.4E-47 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 SUPERFAMILY SSF52777 1275 1526 4.78E-45 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 3551 3951 4.2E-136 T 22-04-2016 IPR010071 Amino acid adenylation domain PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 534 925 2.5E-129 T 22-04-2016 IPR010071 Amino acid adenylation domain PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 5055 5456 2.2E-122 T 22-04-2016 IPR010071 Amino acid adenylation domain PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 2036 2438 1.8E-132 T 22-04-2016 IPR010071 Amino acid adenylation domain PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Pfam PF13745 HxxPF-repeated domain 367 459 3.1E-32 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 SUPERFAMILY SSF52777 3250 3493 2.45E-51 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 SUPERFAMILY SSF53474 5610 5860 7.94E-40 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 ProSitePatterns PS00455 Putative AMP-binding domain signature. 3671 3682 - T 22-04-2016 IPR020845 AMP-binding, conserved site PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 ProSitePatterns PS00455 Putative AMP-binding domain signature. 5173 5184 - T 22-04-2016 IPR020845 AMP-binding, conserved site PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 ProSitePatterns PS00455 Putative AMP-binding domain signature. 2157 2168 - T 22-04-2016 IPR020845 AMP-binding, conserved site PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 SUPERFAMILY SSF56801 4993 5551 3.53E-147 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 SMART SM00824 Thioesterase 5628 5802 0.002 T 22-04-2016 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 SUPERFAMILY SSF47336 2523 2593 9.81E-18 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 SUPERFAMILY SSF52777 53 226 1.08E-53 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 SUPERFAMILY SSF52777 232 500 1.89E-64 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Gene3D G3DSA:3.40.50.980 5181 5342 2.1E-34 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Gene3D G3DSA:3.40.50.980 661 813 4.3E-31 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 SUPERFAMILY SSF56801 1973 2544 8.9E-159 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 SUPERFAMILY SSF47336 1011 1080 1.57E-17 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 1395 1550 2.7E-46 T 22-04-2016 IPR010060 Non-ribosomal peptide synthase PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 4415 4570 5.4E-46 T 22-04-2016 IPR010060 Non-ribosomal peptide synthase PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 2910 3065 4.2E-47 T 22-04-2016 IPR010060 Non-ribosomal peptide synthase PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Pfam PF13193 AMP-binding enzyme C-terminal domain 5440 5513 1.7E-11 T 22-04-2016 IPR025110 AMP-binding enzyme C-terminal domain PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Pfam PF13193 AMP-binding enzyme C-terminal domain 2422 2505 2.2E-12 T 22-04-2016 IPR025110 AMP-binding enzyme C-terminal domain PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Pfam PF13193 AMP-binding enzyme C-terminal domain 910 992 3.2E-11 T 22-04-2016 IPR025110 AMP-binding enzyme C-terminal domain PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Pfam PF13193 AMP-binding enzyme C-terminal domain 3935 4012 4.9E-12 T 22-04-2016 IPR025110 AMP-binding enzyme C-terminal domain PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Gene3D G3DSA:3.40.50.1820 5612 5729 7.0E-33 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 SUPERFAMILY SSF52777 4112 4309 7.0E-41 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Gene3D G3DSA:3.40.50.980 506 660 5.0E-55 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 SUPERFAMILY SSF56801 3490 4051 3.14E-166 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Pfam PF00975 Thioesterase domain 5626 5809 1.5E-26 T 22-04-2016 IPR001031 Thioesterase GO:0009058|GO:0016788 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 SUPERFAMILY SSF52777 1095 1289 7.0E-38 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 SUPERFAMILY SSF52777 2605 2803 1.11E-41 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 ProSitePatterns PS00012 Phosphopantetheine attachment site. 5562 5577 - T 22-04-2016 IPR006162 Phosphopantetheine attachment site PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1042 1057 - T 22-04-2016 IPR006162 Phosphopantetheine attachment site PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2555 2570 - T 22-04-2016 IPR006162 Phosphopantetheine attachment site PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 ProSitePatterns PS00012 Phosphopantetheine attachment site. 4062 4077 - T 22-04-2016 IPR006162 Phosphopantetheine attachment site PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 SUPERFAMILY SSF52777 1556 1749 2.89E-41 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Gene3D G3DSA:3.40.50.980 2011 2177 1.3E-50 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Gene3D G3DSA:3.40.50.980 5034 5180 3.8E-46 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Gene3D G3DSA:3.40.50.980 3523 3692 1.9E-53 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 SUPERFAMILY SSF52777 4756 4998 6.34E-47 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 PANTHER PTHR24095:SF173 4555 5513 0.0 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 PANTHER PTHR24095:SF173 2188 2681 0.0 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 PANTHER PTHR24095:SF173 4525 4538 0.0 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 PANTHER PTHR24095:SF173 3050 4093 0.0 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 SUPERFAMILY SSF47336 5531 5603 1.7E-15 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Gene3D G3DSA:3.30.300.30 3922 4041 1.5E-43 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Gene3D G3DSA:3.30.300.30 5427 5541 3.5E-43 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Gene3D G3DSA:3.30.300.30 2409 2533 6.4E-42 T 22-04-2016 PP4_RS27475 fa3d538065450ae81088fcd54d51a87e 5876 Gene3D G3DSA:3.30.300.30 897 1021 5.0E-40 T 22-04-2016 PP4_RS16730 6384ca1b7a690a264505de2b36eecd2b 616 SUPERFAMILY SSF52540 357 602 2.05E-81 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS16730 6384ca1b7a690a264505de2b36eecd2b 616 Pfam PF00005 ABC transporter 384 532 3.3E-29 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS16730 6384ca1b7a690a264505de2b36eecd2b 616 ProSitePatterns PS00211 ABC transporters family signature. 504 518 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS16730 6384ca1b7a690a264505de2b36eecd2b 616 Gene3D G3DSA:1.20.1560.10 28 352 3.3E-65 T 22-04-2016 PP4_RS16730 6384ca1b7a690a264505de2b36eecd2b 616 PANTHER PTHR24221 12 616 1.3E-180 T 22-04-2016 PP4_RS16730 6384ca1b7a690a264505de2b36eecd2b 616 Pfam PF00664 ABC transporter transmembrane region 50 315 3.5E-35 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PP4_RS16730 6384ca1b7a690a264505de2b36eecd2b 616 SMART SM00382 392 578 2.2E-12 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS16730 6384ca1b7a690a264505de2b36eecd2b 616 Gene3D G3DSA:3.40.50.300 365 597 3.7E-75 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS16730 6384ca1b7a690a264505de2b36eecd2b 616 SUPERFAMILY SSF90123 29 353 6.28E-64 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PP4_RS12310 222b414858ed7336df1feec66f148d6d 353 SUPERFAMILY SSF51569 19 351 1.99E-124 T 22-04-2016 PP4_RS12310 222b414858ed7336df1feec66f148d6d 353 PANTHER PTHR21225 23 353 1.3E-198 T 22-04-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 PP4_RS12310 222b414858ed7336df1feec66f148d6d 353 PANTHER PTHR21225:SF5 23 353 1.3E-198 T 22-04-2016 PP4_RS12310 222b414858ed7336df1feec66f148d6d 353 Pfam PF00793 DAHP synthetase I family 50 345 7.1E-83 T 22-04-2016 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 PP4_RS12310 222b414858ed7336df1feec66f148d6d 353 Gene3D G3DSA:3.20.20.70 21 352 9.5E-137 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS12310 222b414858ed7336df1feec66f148d6d 353 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 18 352 1.3E-135 T 22-04-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 PP4_RS12310 222b414858ed7336df1feec66f148d6d 353 PIRSF PIRSF001361 5 353 6.1E-148 T 22-04-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 PP4_RS19415 48825b1ebf9dad0ec15d2d297ed6c652 493 Hamap MF_00022_B Glutamate--tRNA ligase [gltX]. 4 471 30.438 T 22-04-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 PP4_RS19415 48825b1ebf9dad0ec15d2d297ed6c652 493 PANTHER PTHR11451 4 333 2.3E-104 T 22-04-2016 PP4_RS19415 48825b1ebf9dad0ec15d2d297ed6c652 493 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 3 469 4.5E-141 T 22-04-2016 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 PP4_RS19415 48825b1ebf9dad0ec15d2d297ed6c652 493 PRINTS PR00987 Glutamyl-tRNA synthetase signature 193 203 8.8E-23 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 PP4_RS19415 48825b1ebf9dad0ec15d2d297ed6c652 493 PRINTS PR00987 Glutamyl-tRNA synthetase signature 36 49 8.8E-23 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 PP4_RS19415 48825b1ebf9dad0ec15d2d297ed6c652 493 PRINTS PR00987 Glutamyl-tRNA synthetase signature 21 32 8.8E-23 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 PP4_RS19415 48825b1ebf9dad0ec15d2d297ed6c652 493 PRINTS PR00987 Glutamyl-tRNA synthetase signature 209 217 8.8E-23 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 PP4_RS19415 48825b1ebf9dad0ec15d2d297ed6c652 493 PRINTS PR00987 Glutamyl-tRNA synthetase signature 7 19 8.8E-23 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 PP4_RS19415 48825b1ebf9dad0ec15d2d297ed6c652 493 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 4 320 1.3E-109 T 22-04-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 PP4_RS19415 48825b1ebf9dad0ec15d2d297ed6c652 493 Gene3D G3DSA:3.90.800.10 69 194 9.8E-41 T 22-04-2016 PP4_RS19415 48825b1ebf9dad0ec15d2d297ed6c652 493 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 10 21 - T 22-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS19415 48825b1ebf9dad0ec15d2d297ed6c652 493 SUPERFAMILY SSF52374 4 308 3.49E-110 T 22-04-2016 PP4_RS19415 48825b1ebf9dad0ec15d2d297ed6c652 493 Gene3D G3DSA:1.10.10.350 371 471 8.0E-14 T 22-04-2016 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 PP4_RS19415 48825b1ebf9dad0ec15d2d297ed6c652 493 SUPERFAMILY SSF48163 314 471 1.07E-35 T 22-04-2016 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188 PP4_RS19415 48825b1ebf9dad0ec15d2d297ed6c652 493 PANTHER PTHR11451:SF41 4 333 2.3E-104 T 22-04-2016 PP4_RS19415 48825b1ebf9dad0ec15d2d297ed6c652 493 Gene3D G3DSA:1.10.1160.10 246 329 6.1E-33 T 22-04-2016 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: REACT_71 PP4_RS19415 48825b1ebf9dad0ec15d2d297ed6c652 493 Gene3D G3DSA:3.40.50.620 195 244 5.2E-46 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS19415 48825b1ebf9dad0ec15d2d297ed6c652 493 Gene3D G3DSA:3.40.50.620 3 68 5.2E-46 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS24325 f0a2968dafc99b2259b6677e275bc20a 243 SUPERFAMILY SSF56300 147 234 1.97E-27 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS24325 f0a2968dafc99b2259b6677e275bc20a 243 SUPERFAMILY SSF56300 1 108 1.97E-27 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS24325 f0a2968dafc99b2259b6677e275bc20a 243 Gene3D G3DSA:3.60.21.10 139 222 3.8E-17 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS24325 f0a2968dafc99b2259b6677e275bc20a 243 Gene3D G3DSA:3.60.21.10 1 63 3.8E-17 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS24325 f0a2968dafc99b2259b6677e275bc20a 243 Pfam PF00149 Calcineurin-like phosphoesterase 1 210 1.5E-11 T 22-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 PP4_RS24325 f0a2968dafc99b2259b6677e275bc20a 243 PANTHER PTHR37844 1 243 1.7E-23 T 22-04-2016 PP4_RS03830 2aa8ddf63d308d48a387920e415ad39d 881 SUPERFAMILY SSF55785 512 637 1.29E-14 T 22-04-2016 IPR000014 PAS domain PP4_RS03830 2aa8ddf63d308d48a387920e415ad39d 881 Gene3D G3DSA:3.30.565.10 700 878 1.5E-35 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS03830 2aa8ddf63d308d48a387920e415ad39d 881 Gene3D G3DSA:3.30.450.20 426 532 3.8E-18 T 22-04-2016 PP4_RS03830 2aa8ddf63d308d48a387920e415ad39d 881 Pfam PF08448 PAS fold 533 642 2.7E-7 T 22-04-2016 IPR013656 PAS fold-4 PP4_RS03830 2aa8ddf63d308d48a387920e415ad39d 881 SMART SM00387 768 879 9.7E-31 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS03830 2aa8ddf63d308d48a387920e415ad39d 881 Pfam PF00512 His Kinase A (phospho-acceptor) domain 657 723 9.4E-8 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS03830 2aa8ddf63d308d48a387920e415ad39d 881 PANTHER PTHR24423 364 877 1.3E-134 T 22-04-2016 PP4_RS03830 2aa8ddf63d308d48a387920e415ad39d 881 PANTHER PTHR24423:SF485 364 877 1.3E-134 T 22-04-2016 PP4_RS03830 2aa8ddf63d308d48a387920e415ad39d 881 SUPERFAMILY SSF55785 424 515 5.8E-10 T 22-04-2016 IPR000014 PAS domain PP4_RS03830 2aa8ddf63d308d48a387920e415ad39d 881 SUPERFAMILY SSF55874 716 878 8.91E-37 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS03830 2aa8ddf63d308d48a387920e415ad39d 881 Gene3D G3DSA:3.30.450.20 272 384 1.8E-9 T 22-04-2016 PP4_RS03830 2aa8ddf63d308d48a387920e415ad39d 881 Gene3D G3DSA:3.30.450.20 533 637 2.6E-12 T 22-04-2016 PP4_RS03830 2aa8ddf63d308d48a387920e415ad39d 881 SMART SM00388 656 726 6.7E-5 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS03830 2aa8ddf63d308d48a387920e415ad39d 881 SMART SM00091 527 593 5.3E-5 T 22-04-2016 IPR000014 PAS domain PP4_RS03830 2aa8ddf63d308d48a387920e415ad39d 881 SMART SM00091 280 344 6.9 T 22-04-2016 IPR000014 PAS domain PP4_RS03830 2aa8ddf63d308d48a387920e415ad39d 881 SMART SM00091 399 468 20.0 T 22-04-2016 IPR000014 PAS domain PP4_RS03830 2aa8ddf63d308d48a387920e415ad39d 881 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 768 878 4.2E-19 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS03830 2aa8ddf63d308d48a387920e415ad39d 881 SUPERFAMILY SSF47384 652 722 8.44E-7 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS03830 2aa8ddf63d308d48a387920e415ad39d 881 PRINTS PR00344 Bacterial sensor protein C-terminal signature 809 823 1.0E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS03830 2aa8ddf63d308d48a387920e415ad39d 881 PRINTS PR00344 Bacterial sensor protein C-terminal signature 827 837 1.0E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS03830 2aa8ddf63d308d48a387920e415ad39d 881 PRINTS PR00344 Bacterial sensor protein C-terminal signature 840 858 1.0E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS03830 2aa8ddf63d308d48a387920e415ad39d 881 Pfam PF08447 PAS fold 427 507 1.1E-7 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 PP4_RS16450 b7a4a08b7b44af243dced845b5c37588 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 7.0E-11 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS16450 b7a4a08b7b44af243dced845b5c37588 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 168 7.0E-11 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS16450 b7a4a08b7b44af243dced845b5c37588 243 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 129 137 7.0E-11 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS16450 b7a4a08b7b44af243dced845b5c37588 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 123 139 1.3E-29 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS16450 b7a4a08b7b44af243dced845b5c37588 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 1.3E-29 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS16450 b7a4a08b7b44af243dced845b5c37588 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 149 168 1.3E-29 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS16450 b7a4a08b7b44af243dced845b5c37588 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 170 187 1.3E-29 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS16450 b7a4a08b7b44af243dced845b5c37588 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 1.3E-29 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS16450 b7a4a08b7b44af243dced845b5c37588 243 Pfam PF00106 short chain dehydrogenase 9 190 5.3E-52 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS16450 b7a4a08b7b44af243dced845b5c37588 243 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 185 1.4E-5 T 22-04-2016 PP4_RS16450 b7a4a08b7b44af243dced845b5c37588 243 SUPERFAMILY SSF51735 8 230 1.73E-63 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS16450 b7a4a08b7b44af243dced845b5c37588 243 Gene3D G3DSA:3.40.50.720 7 235 9.7E-65 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS16450 b7a4a08b7b44af243dced845b5c37588 243 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 136 164 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PP4_RS16450 b7a4a08b7b44af243dced845b5c37588 243 PANTHER PTHR24322 149 180 1.3E-52 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS16450 b7a4a08b7b44af243dced845b5c37588 243 PANTHER PTHR24322 11 133 1.3E-52 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19140 f70ddee10fca1ee5c44659a3c7df744b 572 PANTHER PTHR22550 1 521 4.9E-68 T 22-04-2016 PP4_RS19140 f70ddee10fca1ee5c44659a3c7df744b 572 PANTHER PTHR22550:SF5 1 521 4.9E-68 T 22-04-2016 PP4_RS19140 f70ddee10fca1ee5c44659a3c7df744b 572 SUPERFAMILY SSF53300 94 274 1.27E-11 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS19140 f70ddee10fca1ee5c44659a3c7df744b 572 SMART SM00028 403 436 3.1E-7 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS19140 f70ddee10fca1ee5c44659a3c7df744b 572 SUPERFAMILY SSF48452 356 455 6.99E-13 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS19140 f70ddee10fca1ee5c44659a3c7df744b 572 Pfam PF13519 von Willebrand factor type A domain 95 189 4.4E-9 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS19140 f70ddee10fca1ee5c44659a3c7df744b 572 Pfam PF00515 Tetratricopeptide repeat 403 435 5.2E-9 T 22-04-2016 IPR001440 Tetratricopeptide repeat 1 GO:0005515 PP4_RS19140 f70ddee10fca1ee5c44659a3c7df744b 572 Gene3D G3DSA:1.25.40.10 356 452 2.8E-14 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS15870 645a069b7f8756595c4b506bafb9d15d 113 Gene3D G3DSA:3.90.1150.10 46 99 2.6E-4 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS15870 645a069b7f8756595c4b506bafb9d15d 113 SUPERFAMILY SSF53383 4 109 2.08E-13 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS15870 645a069b7f8756595c4b506bafb9d15d 113 Gene3D G3DSA:3.40.640.10 2 43 4.5E-7 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS09290 0158a483e1b1942b1bdcd1547e02de34 350 PANTHER PTHR17630:SF49 32 191 2.7E-77 T 22-04-2016 PP4_RS09290 0158a483e1b1942b1bdcd1547e02de34 350 PANTHER PTHR17630:SF49 211 350 2.7E-77 T 22-04-2016 PP4_RS09290 0158a483e1b1942b1bdcd1547e02de34 350 SUPERFAMILY SSF53474 238 348 2.41E-40 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS09290 0158a483e1b1942b1bdcd1547e02de34 350 SUPERFAMILY SSF53474 44 192 2.41E-40 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS09290 0158a483e1b1942b1bdcd1547e02de34 350 Gene3D G3DSA:3.40.50.1820 51 350 8.9E-57 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS09290 0158a483e1b1942b1bdcd1547e02de34 350 PANTHER PTHR17630 211 350 2.7E-77 T 22-04-2016 PP4_RS09290 0158a483e1b1942b1bdcd1547e02de34 350 Pfam PF01738 Dienelactone hydrolase family 63 181 9.5E-7 T 22-04-2016 IPR002925 Dienelactone hydrolase GO:0016787 PP4_RS09290 0158a483e1b1942b1bdcd1547e02de34 350 PANTHER PTHR17630 32 191 2.7E-77 T 22-04-2016 PP4_RS09250 6b2b128dd3bec2605c3bc7ac06132611 120 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 8 111 2.5E-8 T 22-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain PP4_RS09250 6b2b128dd3bec2605c3bc7ac06132611 120 SUPERFAMILY SSF54593 8 116 9.4E-24 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PP4_RS09250 6b2b128dd3bec2605c3bc7ac06132611 120 Gene3D G3DSA:3.10.180.10 7 115 1.1E-23 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PP4_RS09250 6b2b128dd3bec2605c3bc7ac06132611 120 PANTHER PTHR33993:SF1 5 116 1.7E-49 T 22-04-2016 PP4_RS09250 6b2b128dd3bec2605c3bc7ac06132611 120 PANTHER PTHR33993 5 116 1.7E-49 T 22-04-2016 PP4_RS21040 15d4a6e287d197d061ff3a3c22710a44 287 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 282 1.2E-92 T 22-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 PP4_RS21040 15d4a6e287d197d061ff3a3c22710a44 287 Gene3D G3DSA:3.30.479.20 229 264 9.5E-25 T 22-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 PP4_RS21040 15d4a6e287d197d061ff3a3c22710a44 287 Gene3D G3DSA:3.30.479.20 142 178 9.5E-25 T 22-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 PP4_RS21040 15d4a6e287d197d061ff3a3c22710a44 287 ProSitePatterns PS01126 Elongation factor Ts signature 1. 12 27 - T 22-04-2016 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 PP4_RS21040 15d4a6e287d197d061ff3a3c22710a44 287 SUPERFAMILY SSF54713 56 139 3.49E-16 T 22-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 PP4_RS21040 15d4a6e287d197d061ff3a3c22710a44 287 PANTHER PTHR11741 1 285 1.6E-105 T 22-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 PP4_RS21040 15d4a6e287d197d061ff3a3c22710a44 287 Gene3D G3DSA:1.10.8.10 3 55 1.3E-24 T 22-04-2016 PP4_RS21040 15d4a6e287d197d061ff3a3c22710a44 287 Pfam PF00889 Elongation factor TS 71 265 8.0E-54 T 22-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 PP4_RS21040 15d4a6e287d197d061ff3a3c22710a44 287 Hamap MF_00050 Elongation factor Ts [tsf]. 1 282 69.398 T 22-04-2016 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 PP4_RS21040 15d4a6e287d197d061ff3a3c22710a44 287 SUPERFAMILY SSF46934 4 54 9.59E-17 T 22-04-2016 IPR009060 UBA-like GO:0005515 PP4_RS21040 15d4a6e287d197d061ff3a3c22710a44 287 ProSitePatterns PS01127 Elongation factor Ts signature 2. 75 85 - T 22-04-2016 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 PP4_RS21040 15d4a6e287d197d061ff3a3c22710a44 287 SUPERFAMILY SSF54713 141 282 2.49E-44 T 22-04-2016 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0005622|GO:0006414 PP4_RS21040 15d4a6e287d197d061ff3a3c22710a44 287 Gene3D G3DSA:1.10.286.20 184 228 3.3E-11 T 22-04-2016 PP4_RS23565 dc35fde37bafe349d7486b5f1b4be8a3 295 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 9 231 7.4E-45 T 22-04-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 PP4_RS23565 dc35fde37bafe349d7486b5f1b4be8a3 295 Gene3D G3DSA:3.90.800.10 72 170 8.7E-21 T 22-04-2016 PP4_RS23565 dc35fde37bafe349d7486b5f1b4be8a3 295 TIGRFAM TIGR03838 queuosine_YadB: glutamyl-queuosine tRNA(Asp) synthetase 6 270 1.2E-110 T 22-04-2016 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0006400|GO:0016876 PP4_RS23565 dc35fde37bafe349d7486b5f1b4be8a3 295 Gene3D G3DSA:3.40.50.620 172 221 5.2E-42 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS23565 dc35fde37bafe349d7486b5f1b4be8a3 295 Gene3D G3DSA:3.40.50.620 6 71 5.2E-42 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS23565 dc35fde37bafe349d7486b5f1b4be8a3 295 PRINTS PR00987 Glutamyl-tRNA synthetase signature 23 34 5.0E-14 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 PP4_RS23565 dc35fde37bafe349d7486b5f1b4be8a3 295 PRINTS PR00987 Glutamyl-tRNA synthetase signature 170 180 5.0E-14 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 PP4_RS23565 dc35fde37bafe349d7486b5f1b4be8a3 295 PRINTS PR00987 Glutamyl-tRNA synthetase signature 9 21 5.0E-14 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 PP4_RS23565 dc35fde37bafe349d7486b5f1b4be8a3 295 PRINTS PR00987 Glutamyl-tRNA synthetase signature 186 194 5.0E-14 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 PP4_RS23565 dc35fde37bafe349d7486b5f1b4be8a3 295 PRINTS PR00987 Glutamyl-tRNA synthetase signature 38 51 5.0E-14 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 PP4_RS23565 dc35fde37bafe349d7486b5f1b4be8a3 295 SUPERFAMILY SSF52374 6 287 5.63E-86 T 22-04-2016 PP4_RS23565 dc35fde37bafe349d7486b5f1b4be8a3 295 PANTHER PTHR11451 6 221 4.8E-109 T 22-04-2016 PP4_RS23565 dc35fde37bafe349d7486b5f1b4be8a3 295 PANTHER PTHR11451 244 259 4.8E-109 T 22-04-2016 PP4_RS23565 dc35fde37bafe349d7486b5f1b4be8a3 295 PANTHER PTHR11451:SF35 6 221 4.8E-109 T 22-04-2016 PP4_RS23565 dc35fde37bafe349d7486b5f1b4be8a3 295 PANTHER PTHR11451:SF35 244 259 4.8E-109 T 22-04-2016 PP4_RS23565 dc35fde37bafe349d7486b5f1b4be8a3 295 Hamap MF_01428 Glutamyl-Q tRNA(Asp) synthetase [gluQ]. 6 290 43.124 T 22-04-2016 IPR022380 Glutamyl-Q tRNA(Asp) synthetase GO:0000166|GO:0006400|GO:0016876 PP4_RS05670 5d74cc9b1e7811575321189508d408cb 426 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 417 1.1E-110 T 22-04-2016 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit PP4_RS05670 5d74cc9b1e7811575321189508d408cb 426 PANTHER PTHR33362 1 422 3.6E-208 T 22-04-2016 PP4_RS05670 5d74cc9b1e7811575321189508d408cb 426 PANTHER PTHR33362:SF2 1 422 3.6E-208 T 22-04-2016 PP4_RS05670 5d74cc9b1e7811575321189508d408cb 426 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 422 5.8E-128 T 22-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 PP4_RS05670 5d74cc9b1e7811575321189508d408cb 426 PIRSF PIRSF006066 1 426 1.4E-170 T 22-04-2016 IPR004681 TRAP transporter permease protein GO:0016021 PP4_RS22830 f1f5827d5a79f090430f278291a9dfcf 338 PANTHER PTHR11108 5 202 2.3E-93 T 22-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 PP4_RS22830 f1f5827d5a79f090430f278291a9dfcf 338 PANTHER PTHR11108 226 334 2.3E-93 T 22-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 PP4_RS22830 f1f5827d5a79f090430f278291a9dfcf 338 Gene3D G3DSA:3.40.50.1400 190 337 2.5E-32 T 22-04-2016 PP4_RS22830 f1f5827d5a79f090430f278291a9dfcf 338 Hamap MF_00323 Ferrochelatase [hemH]. 2 338 33.051 T 22-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 PP4_RS22830 f1f5827d5a79f090430f278291a9dfcf 338 Gene3D G3DSA:3.40.50.1400 4 189 4.8E-51 T 22-04-2016 PP4_RS22830 f1f5827d5a79f090430f278291a9dfcf 338 TIGRFAM TIGR00109 hemH: ferrochelatase 3 195 3.0E-38 T 22-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 PP4_RS22830 f1f5827d5a79f090430f278291a9dfcf 338 Pfam PF00762 Ferrochelatase 4 337 7.3E-98 T 22-04-2016 IPR001015 Ferrochelatase GO:0004325|GO:0006783 KEGG: 00860+4.99.1.1|UniPathway: UPA00252 PP4_RS22830 f1f5827d5a79f090430f278291a9dfcf 338 SUPERFAMILY SSF53800 2 337 3.49E-86 T 22-04-2016 PP4_RS02485 e3f9196e715c895c274464d5c46471a0 156 Gene3D G3DSA:1.10.455.10 8 156 1.5E-66 T 22-04-2016 IPR023798 Ribosomal protein S7 domain PP4_RS02485 e3f9196e715c895c274464d5c46471a0 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 1.7E-67 T 22-04-2016 IPR023798 Ribosomal protein S7 domain PP4_RS02485 e3f9196e715c895c274464d5c46471a0 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 155 2.7E-68 T 22-04-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 PP4_RS02485 e3f9196e715c895c274464d5c46471a0 156 ProSitePatterns PS00052 Ribosomal protein S7 signature. 20 46 - T 22-04-2016 IPR020606 Ribosomal protein S7, conserved site GO:0003723|GO:0003735|GO:0006412 PP4_RS02485 e3f9196e715c895c274464d5c46471a0 156 PANTHER PTHR11205 1 156 5.2E-90 T 22-04-2016 IPR000235 Ribosomal protein S5/S7 GO:0006412 PP4_RS02485 e3f9196e715c895c274464d5c46471a0 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 36.665 T 22-04-2016 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 PP4_RS02485 e3f9196e715c895c274464d5c46471a0 156 PIRSF PIRSF002122 2 156 1.7E-60 T 22-04-2016 IPR000235 Ribosomal protein S5/S7 GO:0006412 PP4_RS02485 e3f9196e715c895c274464d5c46471a0 156 SUPERFAMILY SSF47973 6 149 6.8E-61 T 22-04-2016 IPR023798 Ribosomal protein S7 domain PP4_RS23095 a4c419a7bc77eb48de411de7d6f99ef9 85 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 28 69 9.0E-18 T 22-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS23095 a4c419a7bc77eb48de411de7d6f99ef9 85 PANTHER PTHR15893 1 85 1.1E-46 T 22-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS23095 a4c419a7bc77eb48de411de7d6f99ef9 85 SUPERFAMILY SSF110324 2 81 6.63E-33 T 22-04-2016 PP4_RS23095 a4c419a7bc77eb48de411de7d6f99ef9 85 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 1 85 27.895 T 22-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS23095 a4c419a7bc77eb48de411de7d6f99ef9 85 Pfam PF01016 Ribosomal L27 protein 2 82 2.2E-37 T 22-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS23095 a4c419a7bc77eb48de411de7d6f99ef9 85 PRINTS PR00063 Ribosomal protein L27 signature 29 53 5.5E-36 T 22-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS23095 a4c419a7bc77eb48de411de7d6f99ef9 85 PRINTS PR00063 Ribosomal protein L27 signature 4 28 5.5E-36 T 22-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS23095 a4c419a7bc77eb48de411de7d6f99ef9 85 PRINTS PR00063 Ribosomal protein L27 signature 54 78 5.5E-36 T 22-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS23095 a4c419a7bc77eb48de411de7d6f99ef9 85 ProSitePatterns PS00831 Ribosomal protein L27 signature. 34 48 - T 22-04-2016 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS23095 a4c419a7bc77eb48de411de7d6f99ef9 85 Gene3D G3DSA:2.40.50.100 20 83 1.1E-28 T 22-04-2016 PP4_RS23095 a4c419a7bc77eb48de411de7d6f99ef9 85 TIGRFAM TIGR00062 L27: ribosomal protein bL27 1 83 9.9E-39 T 22-04-2016 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS03175 c2569e4ad9f4afb3a122dbce9aea606f 209 PANTHER PTHR30108 4 60 1.6E-85 T 22-04-2016 PP4_RS03175 c2569e4ad9f4afb3a122dbce9aea606f 209 PANTHER PTHR30108 77 202 1.6E-85 T 22-04-2016 PP4_RS03175 c2569e4ad9f4afb3a122dbce9aea606f 209 PANTHER PTHR30108:SF2 77 202 1.6E-85 T 22-04-2016 PP4_RS03175 c2569e4ad9f4afb3a122dbce9aea606f 209 SUPERFAMILY SSF52507 6 202 4.71E-59 T 22-04-2016 IPR003382 Flavoprotein GO:0003824 PP4_RS03175 c2569e4ad9f4afb3a122dbce9aea606f 209 Pfam PF02441 Flavoprotein 6 144 1.4E-26 T 22-04-2016 IPR003382 Flavoprotein GO:0003824 PP4_RS03175 c2569e4ad9f4afb3a122dbce9aea606f 209 TIGRFAM TIGR00421 ubiX_pad: polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases 6 200 1.1E-61 T 22-04-2016 IPR004507 Flavin prenyltransferase UbiX/Pad1 PP4_RS03175 c2569e4ad9f4afb3a122dbce9aea606f 209 Hamap MF_01984 Flavin prenyltransferase UbiX [ubiX]. 5 202 36.104 T 22-04-2016 IPR004507 Flavin prenyltransferase UbiX/Pad1 PP4_RS03175 c2569e4ad9f4afb3a122dbce9aea606f 209 Gene3D G3DSA:3.40.50.1950 6 203 1.1E-74 T 22-04-2016 IPR003382 Flavoprotein GO:0003824 PP4_RS03175 c2569e4ad9f4afb3a122dbce9aea606f 209 PANTHER PTHR30108:SF2 4 60 1.6E-85 T 22-04-2016 PP4_RS06315 d444867411509745cec395978d6c61ee 550 SUPERFAMILY SSF90123 10 313 2.22E-35 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PP4_RS06315 d444867411509745cec395978d6c61ee 550 PANTHER PTHR24220 338 545 8.7E-102 T 22-04-2016 PP4_RS06315 d444867411509745cec395978d6c61ee 550 TIGRFAM TIGR01194 cyc_pep_trnsptr: cyclic peptide transporter 7 548 7.0E-228 T 22-04-2016 IPR005898 Cyclic peptide transporter GO:0005524|GO:0015197|GO:0015833|GO:0016021 PP4_RS06315 d444867411509745cec395978d6c61ee 550 Gene3D G3DSA:1.20.1560.10 10 312 7.5E-30 T 22-04-2016 PP4_RS06315 d444867411509745cec395978d6c61ee 550 SMART SM00382 366 542 4.9E-12 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS06315 d444867411509745cec395978d6c61ee 550 Pfam PF00005 ABC transporter 359 493 1.2E-24 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS06315 d444867411509745cec395978d6c61ee 550 PANTHER PTHR24220:SF425 338 545 8.7E-102 T 22-04-2016 PP4_RS06315 d444867411509745cec395978d6c61ee 550 Pfam PF00664 ABC transporter transmembrane region 28 196 3.8E-12 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PP4_RS06315 d444867411509745cec395978d6c61ee 550 Gene3D G3DSA:3.40.50.300 333 548 4.9E-38 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS06315 d444867411509745cec395978d6c61ee 550 SUPERFAMILY SSF52540 330 546 4.09E-42 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25255 c8a2f0d2231eff3f6146bba3c82f009c 1317 Gene3D G3DSA:1.20.5.550 85 136 4.3E-24 T 22-04-2016 IPR024090 Proline dehydrogenase PutA, domain I GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 PP4_RS25255 c8a2f0d2231eff3f6146bba3c82f009c 1317 PIRSF PIRSF000197 72 1317 0.0 T 22-04-2016 IPR025703 Bifunctional protein PutA GO:0003700|GO:0003842|GO:0004657|GO:0006355|GO:0010133 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 PP4_RS25255 c8a2f0d2231eff3f6146bba3c82f009c 1317 Gene3D G3DSA:3.20.20.220 259 615 2.5E-121 T 22-04-2016 IPR029041 FAD-linked oxidoreductase-like PP4_RS25255 c8a2f0d2231eff3f6146bba3c82f009c 1317 Pfam PF01619 Proline dehydrogenase 268 567 1.7E-99 T 22-04-2016 IPR002872 Proline dehydrogenase domain KEGG: 00330+1.5.5.2|MetaCyc: PWY-5737|MetaCyc: PWY-6922|UniPathway: UPA00261 PP4_RS25255 c8a2f0d2231eff3f6146bba3c82f009c 1317 TIGRFAM TIGR01238 D1pyr5carbox3: delta-1-pyrroline-5-carboxylate dehydrogenase 608 1108 9.4E-247 T 22-04-2016 IPR005933 Delta-1-pyrroline-5-carboxylate dehydrogenase 3 GO:0003842|GO:0006561|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 PP4_RS25255 c8a2f0d2231eff3f6146bba3c82f009c 1317 PANTHER PTHR11699 660 1108 4.2E-178 T 22-04-2016 PP4_RS25255 c8a2f0d2231eff3f6146bba3c82f009c 1317 SUPERFAMILY SSF53720 655 1108 2.62E-128 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS25255 c8a2f0d2231eff3f6146bba3c82f009c 1317 Pfam PF14850 DNA-binding domain of Proline dehydrogenase 146 257 4.4E-45 T 22-04-2016 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 PP4_RS25255 c8a2f0d2231eff3f6146bba3c82f009c 1317 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 908 919 - T 22-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 PP4_RS25255 c8a2f0d2231eff3f6146bba3c82f009c 1317 Gene3D G3DSA:1.10.2060.10 142 258 3.1E-53 T 22-04-2016 IPR024082 Proline dehydrogenase PutA, domain II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 PP4_RS25255 c8a2f0d2231eff3f6146bba3c82f009c 1317 Gene3D G3DSA:3.40.605.10 656 895 1.9E-70 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS25255 c8a2f0d2231eff3f6146bba3c82f009c 1317 Gene3D G3DSA:3.40.309.10 896 1085 6.4E-46 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PP4_RS25255 c8a2f0d2231eff3f6146bba3c82f009c 1317 PANTHER PTHR11699:SF18 660 1108 4.2E-178 T 22-04-2016 PP4_RS25255 c8a2f0d2231eff3f6146bba3c82f009c 1317 Pfam PF00171 Aldehyde dehydrogenase family 654 1105 6.0E-117 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PP4_RS25255 c8a2f0d2231eff3f6146bba3c82f009c 1317 SUPERFAMILY SSF51730 260 616 3.41E-122 T 22-04-2016 IPR029041 FAD-linked oxidoreductase-like PP4_RS25255 c8a2f0d2231eff3f6146bba3c82f009c 1317 SUPERFAMILY SSF81935 86 259 2.48E-65 T 22-04-2016 IPR024089 Proline dehydrogenase PutA, domain I/II GO:0003842|GO:0055114 KEGG: 00250+1.2.1.88|KEGG: 00330+1.5.5.2+1.2.1.88|MetaCyc: PWY-5737|MetaCyc: PWY-6853|MetaCyc: PWY-6922|UniPathway: UPA00261|UniPathway: UPA00261 PP4_RS25255 c8a2f0d2231eff3f6146bba3c82f009c 1317 SUPERFAMILY SSF47598 3 45 1.63E-10 T 22-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 PP4_RS02830 8e360d1bfd688141e5f76a0da783b6a9 376 Gene3D G3DSA:3.40.140.10 9 134 4.3E-36 T 22-04-2016 PP4_RS02830 8e360d1bfd688141e5f76a0da783b6a9 376 PIRSF PIRSF006769 4 371 6.6E-124 T 22-04-2016 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525|UniPathway: UPA00275|UniPathway: UPA00275 PP4_RS02830 8e360d1bfd688141e5f76a0da783b6a9 376 PANTHER PTHR11079 9 223 7.1E-67 T 22-04-2016 PP4_RS02830 8e360d1bfd688141e5f76a0da783b6a9 376 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 9 105 2.7E-20 T 22-04-2016 IPR002125 Cytidine and deoxycytidylate deaminases, zinc-binding GO:0008270 PP4_RS02830 8e360d1bfd688141e5f76a0da783b6a9 376 PANTHER PTHR11079:SF10 9 223 7.1E-67 T 22-04-2016 PP4_RS02830 8e360d1bfd688141e5f76a0da783b6a9 376 Pfam PF01872 RibD C-terminal domain 153 364 3.0E-44 T 22-04-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 PP4_RS02830 8e360d1bfd688141e5f76a0da783b6a9 376 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 13 366 4.2E-114 T 22-04-2016 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00040+1.1.1.19|KEGG: 00053+1.1.1.19|KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-5525|UniPathway: UPA00275|UniPathway: UPA00275 PP4_RS02830 8e360d1bfd688141e5f76a0da783b6a9 376 SUPERFAMILY SSF53597 150 367 7.85E-53 T 22-04-2016 IPR024072 Dihydrofolate reductase-like domain PP4_RS02830 8e360d1bfd688141e5f76a0da783b6a9 376 Gene3D G3DSA:3.40.430.10 135 368 6.4E-70 T 22-04-2016 IPR024072 Dihydrofolate reductase-like domain PP4_RS02830 8e360d1bfd688141e5f76a0da783b6a9 376 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 56 94 - T 22-04-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 PP4_RS02830 8e360d1bfd688141e5f76a0da783b6a9 376 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 152 368 3.5E-48 T 22-04-2016 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 PP4_RS02830 8e360d1bfd688141e5f76a0da783b6a9 376 SUPERFAMILY SSF53927 9 150 6.86E-50 T 22-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 PP4_RS23910 ba08a73ec6a75cd19dd773877e436152 450 PANTHER PTHR11662:SF3 1 431 3.7E-128 T 22-04-2016 PP4_RS23910 ba08a73ec6a75cd19dd773877e436152 450 SUPERFAMILY SSF103473 20 437 7.06E-83 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS23910 ba08a73ec6a75cd19dd773877e436152 450 Gene3D G3DSA:1.20.1250.20 236 434 2.1E-20 T 22-04-2016 PP4_RS23910 ba08a73ec6a75cd19dd773877e436152 450 Pfam PF07690 Major Facilitator Superfamily 32 394 3.1E-46 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS23910 ba08a73ec6a75cd19dd773877e436152 450 PANTHER PTHR11662 1 431 3.7E-128 T 22-04-2016 PP4_RS23910 ba08a73ec6a75cd19dd773877e436152 450 Gene3D G3DSA:1.20.1250.20 24 221 2.9E-43 T 22-04-2016 PP4_RS10840 eebe15beb53fcc224c951c50b76b3f54 295 PANTHER PTHR30126:SF11 1 288 9.4E-82 T 22-04-2016 PP4_RS10840 eebe15beb53fcc224c951c50b76b3f54 295 PANTHER PTHR30126 1 288 9.4E-82 T 22-04-2016 PP4_RS10840 eebe15beb53fcc224c951c50b76b3f54 295 Pfam PF03466 LysR substrate binding domain 87 288 3.9E-45 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS10840 eebe15beb53fcc224c951c50b76b3f54 295 Gene3D G3DSA:3.40.190.10 89 176 9.1E-19 T 22-04-2016 PP4_RS10840 eebe15beb53fcc224c951c50b76b3f54 295 SUPERFAMILY SSF46785 1 111 3.63E-26 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS10840 eebe15beb53fcc224c951c50b76b3f54 295 Gene3D G3DSA:1.10.10.10 1 84 2.9E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS10840 eebe15beb53fcc224c951c50b76b3f54 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 4.7E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS10840 eebe15beb53fcc224c951c50b76b3f54 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 4.7E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS10840 eebe15beb53fcc224c951c50b76b3f54 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 4.7E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS10840 eebe15beb53fcc224c951c50b76b3f54 295 Gene3D G3DSA:3.40.190.10 177 262 1.5E-28 T 22-04-2016 PP4_RS10840 eebe15beb53fcc224c951c50b76b3f54 295 SUPERFAMILY SSF53850 90 290 3.5E-40 T 22-04-2016 PP4_RS10840 eebe15beb53fcc224c951c50b76b3f54 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 3.9E-21 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS09490 a597171380a3b37ce4026c060b46a4a6 297 Gene3D G3DSA:1.10.10.10 2 80 2.2E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS09490 a597171380a3b37ce4026c060b46a4a6 297 PANTHER PTHR30293:SF2 2 283 6.5E-79 T 22-04-2016 PP4_RS09490 a597171380a3b37ce4026c060b46a4a6 297 PANTHER PTHR30293 2 283 6.5E-79 T 22-04-2016 PP4_RS09490 a597171380a3b37ce4026c060b46a4a6 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 2.1E-18 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS09490 a597171380a3b37ce4026c060b46a4a6 297 Pfam PF03466 LysR substrate binding domain 93 281 3.2E-15 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS09490 a597171380a3b37ce4026c060b46a4a6 297 SUPERFAMILY SSF53850 90 290 1.12E-26 T 22-04-2016 PP4_RS09490 a597171380a3b37ce4026c060b46a4a6 297 Gene3D G3DSA:3.40.190.10 187 252 1.2E-7 T 22-04-2016 PP4_RS09490 a597171380a3b37ce4026c060b46a4a6 297 SUPERFAMILY SSF46785 2 85 4.3E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16540 d44c8c624e45bc9045a472b968632a17 135 SUPERFAMILY SSF54593 2 127 1.75E-26 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PP4_RS16540 d44c8c624e45bc9045a472b968632a17 135 PANTHER PTHR36437:SF1 1 129 3.2E-54 T 22-04-2016 PP4_RS16540 d44c8c624e45bc9045a472b968632a17 135 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 4 124 2.8E-12 T 22-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain PP4_RS16540 d44c8c624e45bc9045a472b968632a17 135 PANTHER PTHR36437 1 129 3.2E-54 T 22-04-2016 PP4_RS16540 d44c8c624e45bc9045a472b968632a17 135 Gene3D G3DSA:3.10.180.10 1 132 1.9E-25 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PP4_RS21895 b07e94fcabd55d52924aec445b76cec8 161 PANTHER PTHR33371 1 157 2.9E-41 T 22-04-2016 PP4_RS21895 b07e94fcabd55d52924aec445b76cec8 161 TIGRFAM TIGR04430 OM_asym_MlaD: outer membrane lipid asymmetry maintenance protein MlaD 2 147 2.2E-55 T 22-04-2016 IPR030970 Probable phospholipid ABC transporter-binding protein MlaD GO:0015914 PP4_RS21895 b07e94fcabd55d52924aec445b76cec8 161 Pfam PF02470 MlaD protein 38 116 2.5E-24 T 22-04-2016 IPR003399 Mce/MlaD PP4_RS22560 460972ddef54886e67f03a21cc3acb50 1030 SUPERFAMILY SSF82693 141 186 6.28E-21 T 22-04-2016 PP4_RS22560 460972ddef54886e67f03a21cc3acb50 1030 SUPERFAMILY SSF82714 706 787 6.15E-16 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS22560 460972ddef54886e67f03a21cc3acb50 1030 PANTHER PTHR32063 4 1019 0.0 T 22-04-2016 PP4_RS22560 460972ddef54886e67f03a21cc3acb50 1030 Gene3D G3DSA:1.10.3850.10 797 1014 8.2E-54 T 22-04-2016 PP4_RS22560 460972ddef54886e67f03a21cc3acb50 1030 Pfam PF00873 AcrB/AcrD/AcrF family 9 1012 2.5E-299 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS22560 460972ddef54886e67f03a21cc3acb50 1030 SUPERFAMILY SSF82866 792 1016 1.44E-45 T 22-04-2016 PP4_RS22560 460972ddef54886e67f03a21cc3acb50 1030 PANTHER PTHR32063:SF30 4 1019 0.0 T 22-04-2016 PP4_RS22560 460972ddef54886e67f03a21cc3acb50 1030 SUPERFAMILY SSF82693 553 647 1.57E-10 T 22-04-2016 PP4_RS22560 460972ddef54886e67f03a21cc3acb50 1030 SUPERFAMILY SSF82693 272 328 6.28E-21 T 22-04-2016 PP4_RS22560 460972ddef54886e67f03a21cc3acb50 1030 Gene3D G3DSA:3.30.2090.10 187 269 6.5E-15 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS22560 460972ddef54886e67f03a21cc3acb50 1030 Gene3D G3DSA:3.30.2090.10 707 787 8.9E-20 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS22560 460972ddef54886e67f03a21cc3acb50 1030 Gene3D G3DSA:3.30.70.1430 45 145 1.9E-28 T 22-04-2016 PP4_RS22560 460972ddef54886e67f03a21cc3acb50 1030 SUPERFAMILY SSF82693 45 135 2.27E-22 T 22-04-2016 PP4_RS22560 460972ddef54886e67f03a21cc3acb50 1030 PRINTS PR00702 Acriflavin resistance protein family signature 42 60 1.1E-63 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS22560 460972ddef54886e67f03a21cc3acb50 1030 PRINTS PR00702 Acriflavin resistance protein family signature 334 357 1.1E-63 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS22560 460972ddef54886e67f03a21cc3acb50 1030 PRINTS PR00702 Acriflavin resistance protein family signature 467 490 1.1E-63 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS22560 460972ddef54886e67f03a21cc3acb50 1030 PRINTS PR00702 Acriflavin resistance protein family signature 361 382 1.1E-63 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS22560 460972ddef54886e67f03a21cc3acb50 1030 PRINTS PR00702 Acriflavin resistance protein family signature 540 557 1.1E-63 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS22560 460972ddef54886e67f03a21cc3acb50 1030 PRINTS PR00702 Acriflavin resistance protein family signature 14 38 1.1E-63 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS22560 460972ddef54886e67f03a21cc3acb50 1030 PRINTS PR00702 Acriflavin resistance protein family signature 607 621 1.1E-63 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS22560 460972ddef54886e67f03a21cc3acb50 1030 PRINTS PR00702 Acriflavin resistance protein family signature 442 465 1.1E-63 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS22560 460972ddef54886e67f03a21cc3acb50 1030 PRINTS PR00702 Acriflavin resistance protein family signature 389 413 1.1E-63 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS22560 460972ddef54886e67f03a21cc3acb50 1030 SUPERFAMILY SSF82714 187 269 1.01E-14 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS22560 460972ddef54886e67f03a21cc3acb50 1030 SUPERFAMILY SSF82866 294 495 7.98E-46 T 22-04-2016 PP4_RS22560 460972ddef54886e67f03a21cc3acb50 1030 Gene3D G3DSA:1.20.1640.10 289 498 1.0E-54 T 22-04-2016 PP4_RS18115 6c9f4d0bf82e5c77d5bdf9ec9b8693f2 375 SUPERFAMILY SSF56645 3 240 5.63E-85 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 PP4_RS18115 6c9f4d0bf82e5c77d5bdf9ec9b8693f2 375 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 120 215 2.8E-27 T 22-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 PP4_RS18115 6c9f4d0bf82e5c77d5bdf9ec9b8693f2 375 PANTHER PTHR10909:SF305 1 375 3.4E-174 T 22-04-2016 PP4_RS18115 6c9f4d0bf82e5c77d5bdf9ec9b8693f2 375 Gene3D G3DSA:2.40.110.10 119 215 3.1E-42 T 22-04-2016 PP4_RS18115 6c9f4d0bf82e5c77d5bdf9ec9b8693f2 375 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 375 9.9E-51 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS18115 6c9f4d0bf82e5c77d5bdf9ec9b8693f2 375 PANTHER PTHR10909 1 375 3.4E-174 T 22-04-2016 PP4_RS18115 6c9f4d0bf82e5c77d5bdf9ec9b8693f2 375 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 334 353 - T 22-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 PP4_RS18115 6c9f4d0bf82e5c77d5bdf9ec9b8693f2 375 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 122 134 - T 22-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 PP4_RS18115 6c9f4d0bf82e5c77d5bdf9ec9b8693f2 375 PIRSF PIRSF016578 1 375 1.4E-22 T 22-04-2016 PP4_RS18115 6c9f4d0bf82e5c77d5bdf9ec9b8693f2 375 SUPERFAMILY SSF47203 226 375 1.27E-56 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS18115 6c9f4d0bf82e5c77d5bdf9ec9b8693f2 375 Gene3D G3DSA:1.20.140.10 216 375 7.6E-71 T 22-04-2016 PP4_RS18115 6c9f4d0bf82e5c77d5bdf9ec9b8693f2 375 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 4 115 1.0E-36 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS18115 6c9f4d0bf82e5c77d5bdf9ec9b8693f2 375 Gene3D G3DSA:1.10.540.10 3 117 6.5E-40 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS23395 a66f3d1c37018de6a0483f56378db88f 315 Pfam PF02401 LytB protein 3 283 5.5E-93 T 22-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 PP4_RS23395 a66f3d1c37018de6a0483f56378db88f 315 PANTHER PTHR30426 1 312 8.6E-160 T 22-04-2016 PP4_RS23395 a66f3d1c37018de6a0483f56378db88f 315 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2 285 4.3E-99 T 22-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 PP4_RS23395 a66f3d1c37018de6a0483f56378db88f 315 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 1 287 37.989 T 22-04-2016 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 UniPathway: UPA00056|UniPathway: UPA00059 PP4_RS03440 d4a82458dae8738f5566f766cc820da1 1159 PANTHER PTHR30591:SF1 3 1158 5.7E-268 T 22-04-2016 PP4_RS03440 d4a82458dae8738f5566f766cc820da1 1159 PIRSF PIRSF000980 9 1157 0.0 T 22-04-2016 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 PP4_RS03440 d4a82458dae8738f5566f766cc820da1 1159 Pfam PF04257 Exodeoxyribonuclease V, gamma subunit 10 823 8.6E-283 T 22-04-2016 PP4_RS03440 d4a82458dae8738f5566f766cc820da1 1159 Gene3D G3DSA:1.10.10.160 104 206 1.3E-33 T 22-04-2016 IPR013986 DExx box DNA helicase domain PP4_RS03440 d4a82458dae8738f5566f766cc820da1 1159 Hamap MF_01486 RecBCD enzyme subunit RecC [recC]. 9 1150 13.388 T 22-04-2016 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 PP4_RS03440 d4a82458dae8738f5566f766cc820da1 1159 SUPERFAMILY SSF52540 383 824 4.78E-94 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03440 d4a82458dae8738f5566f766cc820da1 1159 TIGRFAM TIGR01450 recC: exodeoxyribonuclease V, gamma subunit 10 1106 0.0 T 22-04-2016 IPR006697 RecBCD enzyme subunit RecC GO:0008854|GO:0009338 PP4_RS03440 d4a82458dae8738f5566f766cc820da1 1159 PANTHER PTHR30591 3 1158 5.7E-268 T 22-04-2016 PP4_RS03440 d4a82458dae8738f5566f766cc820da1 1159 Gene3D G3DSA:3.40.50.300 673 770 7.6E-5 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03440 d4a82458dae8738f5566f766cc820da1 1159 Gene3D G3DSA:3.40.50.300 372 489 7.6E-5 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03440 d4a82458dae8738f5566f766cc820da1 1159 SUPERFAMILY SSF52980 840 1146 1.29E-64 T 22-04-2016 IPR011335 Restriction endonuclease type II-like PP4_RS03440 d4a82458dae8738f5566f766cc820da1 1159 SUPERFAMILY SSF52540 9 367 5.84E-106 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS22630 112aadbb8e022883636b98975a9ba43e 190 PANTHER PTHR30417:SF4 13 183 6.0E-73 T 22-04-2016 PP4_RS22630 112aadbb8e022883636b98975a9ba43e 190 SUPERFAMILY SSF55846 13 184 3.53E-63 T 22-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 PP4_RS22630 112aadbb8e022883636b98975a9ba43e 190 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 32 172 1.9E-17 T 22-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 PP4_RS22630 112aadbb8e022883636b98975a9ba43e 190 Gene3D G3DSA:3.40.80.10 15 184 3.5E-65 T 22-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 PP4_RS22630 112aadbb8e022883636b98975a9ba43e 190 PANTHER PTHR30417 13 183 6.0E-73 T 22-04-2016 PP4_RS22630 112aadbb8e022883636b98975a9ba43e 190 SMART SM00644 20 171 4.8E-52 T 22-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 PP4_RS00305 6afbb410bd74dcebb869f9bedb4988e5 185 Hamap MF_01852 Threonylcarbamoyl-AMP synthase [tsaC]. 4 183 36.641 T 22-04-2016 IPR023535 Threonylcarbamoyl-AMP synthase GO:0002949|GO:0005524 PP4_RS00305 6afbb410bd74dcebb869f9bedb4988e5 185 PANTHER PTHR17490:SF8 6 180 8.5E-86 T 22-04-2016 PP4_RS00305 6afbb410bd74dcebb869f9bedb4988e5 185 Gene3D G3DSA:3.90.870.10 6 185 3.0E-54 T 22-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain PP4_RS00305 6afbb410bd74dcebb869f9bedb4988e5 185 Pfam PF01300 Telomere recombination 14 185 1.5E-40 T 22-04-2016 IPR006070 YrdC-like domain GO:0003725 PP4_RS00305 6afbb410bd74dcebb869f9bedb4988e5 185 SUPERFAMILY SSF55821 6 185 9.46E-52 T 22-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain PP4_RS00305 6afbb410bd74dcebb869f9bedb4988e5 185 PANTHER PTHR17490 6 180 8.5E-86 T 22-04-2016 PP4_RS25075 2f311b108581160f1bfcac095208759c 287 TIGRFAM TIGR00163 PS_decarb: phosphatidylserine decarboxylase 50 282 7.5E-78 T 22-04-2016 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 PP4_RS25075 2f311b108581160f1bfcac095208759c 287 PANTHER PTHR10067 1 283 6.3E-108 T 22-04-2016 IPR033177 Phosphatidylserine decarboxylase GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 PP4_RS25075 2f311b108581160f1bfcac095208759c 287 Hamap MF_00662 Phosphatidylserine decarboxylase proenzyme [psd]. 10 285 48.356 T 22-04-2016 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 PP4_RS25075 2f311b108581160f1bfcac095208759c 287 Pfam PF02666 Phosphatidylserine decarboxylase 63 282 3.0E-60 T 22-04-2016 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|UniPathway: UPA00558 PP4_RS01260 cb4fa94be1b930a76665c88908435a37 264 SUPERFAMILY SSF53850 13 262 7.11E-74 T 22-04-2016 PP4_RS01260 cb4fa94be1b930a76665c88908435a37 264 SMART SM00062 39 261 1.5E-81 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS01260 cb4fa94be1b930a76665c88908435a37 264 SMART SM00079 39 260 3.0E-4 T 22-04-2016 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 PP4_RS01260 cb4fa94be1b930a76665c88908435a37 264 PANTHER PTHR18966 15 262 4.9E-109 T 22-04-2016 PP4_RS01260 cb4fa94be1b930a76665c88908435a37 264 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 40 259 9.3E-71 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS01260 cb4fa94be1b930a76665c88908435a37 264 PANTHER PTHR18966:SF189 15 262 4.9E-109 T 22-04-2016 PP4_RS01260 cb4fa94be1b930a76665c88908435a37 264 Gene3D G3DSA:3.40.190.10 117 219 1.7E-27 T 22-04-2016 PP4_RS01260 cb4fa94be1b930a76665c88908435a37 264 Gene3D G3DSA:3.40.190.10 36 116 2.0E-46 T 22-04-2016 PP4_RS01260 cb4fa94be1b930a76665c88908435a37 264 Gene3D G3DSA:3.40.190.10 220 263 2.0E-46 T 22-04-2016 PP4_RS26355 bb98808154bed11f85334828532e67a3 257 Gene3D G3DSA:3.40.50.300 4 239 7.5E-81 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26355 bb98808154bed11f85334828532e67a3 257 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS26355 bb98808154bed11f85334828532e67a3 257 PANTHER PTHR24220:SF474 6 241 3.1E-123 T 22-04-2016 PP4_RS26355 bb98808154bed11f85334828532e67a3 257 SMART SM00382 29 216 2.3E-16 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS26355 bb98808154bed11f85334828532e67a3 257 PANTHER PTHR24220 6 241 3.1E-123 T 22-04-2016 PP4_RS26355 bb98808154bed11f85334828532e67a3 257 SUPERFAMILY SSF52540 4 238 4.38E-74 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26355 bb98808154bed11f85334828532e67a3 257 PIRSF PIRSF039085 1 244 6.3E-103 T 22-04-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 PP4_RS26355 bb98808154bed11f85334828532e67a3 257 Pfam PF00005 ABC transporter 20 168 2.2E-35 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS23785 f8e3acf4e7b88f67249062905f1838ce 160 SUPERFAMILY SSF74982 5 136 7.32E-50 T 22-04-2016 IPR023620 Small protein B PP4_RS23785 f8e3acf4e7b88f67249062905f1838ce 160 PANTHER PTHR30308:SF2 1 159 2.2E-78 T 22-04-2016 PP4_RS23785 f8e3acf4e7b88f67249062905f1838ce 160 ProSitePatterns PS01317 SsrA-binding protein. 30 42 - T 22-04-2016 IPR020081 SsrA-binding protein, conserved site PP4_RS23785 f8e3acf4e7b88f67249062905f1838ce 160 TIGRFAM TIGR00086 smpB: SsrA-binding protein 12 153 2.8E-54 T 22-04-2016 IPR000037 SsrA-binding protein GO:0003723 PP4_RS23785 f8e3acf4e7b88f67249062905f1838ce 160 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 12 136 4.0E-57 T 22-04-2016 IPR000037 SsrA-binding protein GO:0003723 PP4_RS23785 f8e3acf4e7b88f67249062905f1838ce 160 Gene3D G3DSA:2.40.280.10 11 131 5.2E-49 T 22-04-2016 IPR023620 Small protein B PP4_RS23785 f8e3acf4e7b88f67249062905f1838ce 160 PANTHER PTHR30308 1 159 2.2E-78 T 22-04-2016 PP4_RS23785 f8e3acf4e7b88f67249062905f1838ce 160 Hamap MF_00023 SsrA-binding protein [smpB]. 1 159 70.358 T 22-04-2016 IPR000037 SsrA-binding protein GO:0003723 PP4_RS23785 f8e3acf4e7b88f67249062905f1838ce 160 Pfam PF01668 SmpB protein 11 74 1.2E-29 T 22-04-2016 IPR000037 SsrA-binding protein GO:0003723 PP4_RS12185 cd3ea56d7268c48c27e6877ad9449ae6 432 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 411 1.5E-15 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS12185 cd3ea56d7268c48c27e6877ad9449ae6 432 PRINTS PR00344 Bacterial sensor protein C-terminal signature 417 430 1.5E-15 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS12185 cd3ea56d7268c48c27e6877ad9449ae6 432 PRINTS PR00344 Bacterial sensor protein C-terminal signature 376 386 1.5E-15 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS12185 cd3ea56d7268c48c27e6877ad9449ae6 432 PRINTS PR00344 Bacterial sensor protein C-terminal signature 358 372 1.5E-15 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS12185 cd3ea56d7268c48c27e6877ad9449ae6 432 Pfam PF00512 His Kinase A (phospho-acceptor) domain 213 273 1.7E-6 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS12185 cd3ea56d7268c48c27e6877ad9449ae6 432 SMART SM00388 212 276 0.0013 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS12185 cd3ea56d7268c48c27e6877ad9449ae6 432 SMART SM00304 159 211 7.5E-4 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS12185 cd3ea56d7268c48c27e6877ad9449ae6 432 SUPERFAMILY SSF47384 196 273 6.67E-10 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS12185 cd3ea56d7268c48c27e6877ad9449ae6 432 Gene3D G3DSA:1.10.287.130 202 272 2.7E-12 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS12185 cd3ea56d7268c48c27e6877ad9449ae6 432 SUPERFAMILY SSF55874 266 430 1.31E-38 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS12185 cd3ea56d7268c48c27e6877ad9449ae6 432 PANTHER PTHR24423 153 430 1.7E-66 T 22-04-2016 PP4_RS12185 cd3ea56d7268c48c27e6877ad9449ae6 432 PANTHER PTHR24423:SF564 153 430 1.7E-66 T 22-04-2016 PP4_RS12185 cd3ea56d7268c48c27e6877ad9449ae6 432 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 327 431 1.2E-19 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS12185 cd3ea56d7268c48c27e6877ad9449ae6 432 Gene3D G3DSA:3.30.565.10 281 431 3.8E-36 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS12185 cd3ea56d7268c48c27e6877ad9449ae6 432 SMART SM00387 322 432 2.9E-30 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS26105 77b9a271f05e54246d8ec996597a87a2 330 PANTHER PTHR10794 1 326 4.8E-73 T 22-04-2016 PP4_RS26105 77b9a271f05e54246d8ec996597a87a2 330 Gene3D G3DSA:3.40.50.1820 44 309 3.5E-31 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS26105 77b9a271f05e54246d8ec996597a87a2 330 PIRSF PIRSF005211 1 330 2.8E-115 T 22-04-2016 IPR012020 AB hydrolase 4 family KEGG: 00051+3.1.1.-|KEGG: 00053+3.1.1.-|KEGG: 00363+3.1.1.-|KEGG: 00365+3.1.1.-|KEGG: 00534+3.1.1.-|KEGG: 00564+3.1.1.-|KEGG: 00623+3.1.1.-|KEGG: 00640+3.1.1.-|KEGG: 00830+3.1.1.-|KEGG: 00900+3.1.1.-|KEGG: 00940+3.1.1.-|KEGG: 00960+3.1.1.- PP4_RS26105 77b9a271f05e54246d8ec996597a87a2 330 SUPERFAMILY SSF53474 228 307 9.41E-45 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS26105 77b9a271f05e54246d8ec996597a87a2 330 SUPERFAMILY SSF53474 29 188 9.41E-45 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS26105 77b9a271f05e54246d8ec996597a87a2 330 Pfam PF00561 alpha/beta hydrolase fold 61 309 9.5E-21 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS02560 05d02f79b957fb9e02c80b840c8d470a 104 SUPERFAMILY SSF50104 3 99 1.16E-32 T 22-04-2016 IPR008991 Translation protein SH3-like domain PP4_RS02560 05d02f79b957fb9e02c80b840c8d470a 104 SMART SM00739 3 30 7.7E-4 T 22-04-2016 IPR005824 KOW PP4_RS02560 05d02f79b957fb9e02c80b840c8d470a 104 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 1 101 8.5E-37 T 22-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02560 05d02f79b957fb9e02c80b840c8d470a 104 PANTHER PTHR12903 3 98 7.0E-44 T 22-04-2016 PP4_RS02560 05d02f79b957fb9e02c80b840c8d470a 104 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 38 101 3.1E-25 T 22-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02560 05d02f79b957fb9e02c80b840c8d470a 104 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 2 96 20.738 T 22-04-2016 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02560 05d02f79b957fb9e02c80b840c8d470a 104 ProSitePatterns PS01108 Ribosomal protein L24 signature. 7 24 - T 22-04-2016 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02560 05d02f79b957fb9e02c80b840c8d470a 104 Gene3D G3DSA:2.30.30.30 3 91 1.4E-20 T 22-04-2016 IPR014722 Ribosomal protein L2 domain 2 PP4_RS02560 05d02f79b957fb9e02c80b840c8d470a 104 Pfam PF00467 KOW motif 7 31 4.7E-5 T 22-04-2016 IPR005824 KOW PP4_RS10445 06a12c8a7093e16e8d4ac55194eb911c 366 SMART SM00382 41 184 3.7E-11 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS10445 06a12c8a7093e16e8d4ac55194eb911c 366 Pfam PF00158 Sigma-54 interaction domain 24 188 2.2E-69 T 22-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 PP4_RS10445 06a12c8a7093e16e8d4ac55194eb911c 366 Gene3D G3DSA:1.10.10.60 281 333 6.2E-6 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS10445 06a12c8a7093e16e8d4ac55194eb911c 366 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 45 58 - T 22-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 PP4_RS10445 06a12c8a7093e16e8d4ac55194eb911c 366 Gene3D G3DSA:1.10.8.60 194 263 1.6E-22 T 22-04-2016 PP4_RS10445 06a12c8a7093e16e8d4ac55194eb911c 366 SUPERFAMILY SSF52540 25 263 2.62E-70 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS10445 06a12c8a7093e16e8d4ac55194eb911c 366 SUPERFAMILY SSF46689 234 338 6.27E-6 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS10445 06a12c8a7093e16e8d4ac55194eb911c 366 Gene3D G3DSA:3.40.50.300 24 193 1.1E-55 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS10445 06a12c8a7093e16e8d4ac55194eb911c 366 PANTHER PTHR32071 22 355 1.4E-148 T 22-04-2016 PP4_RS10445 06a12c8a7093e16e8d4ac55194eb911c 366 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 107 122 - T 22-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PP4_RS10445 06a12c8a7093e16e8d4ac55194eb911c 366 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 234 243 - T 22-04-2016 IPR025944 Sigma-54 interaction domain, conserved site PP4_RS26535 4f8f0ebc40a64af3dfd935a91bc674d1 360 PANTHER PTHR13847:SF5 5 353 5.7E-58 T 22-04-2016 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 PP4_RS26535 4f8f0ebc40a64af3dfd935a91bc674d1 360 Gene3D G3DSA:2.40.30.110 278 357 2.9E-27 T 22-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 PP4_RS26535 4f8f0ebc40a64af3dfd935a91bc674d1 360 Gene3D G3DSA:3.30.70.1400 51 134 1.9E-29 T 22-04-2016 PP4_RS26535 4f8f0ebc40a64af3dfd935a91bc674d1 360 SUPERFAMILY SSF103025 3 277 2.98E-84 T 22-04-2016 PP4_RS26535 4f8f0ebc40a64af3dfd935a91bc674d1 360 Gene3D G3DSA:3.30.1360.120 143 230 2.2E-23 T 22-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 PP4_RS26535 4f8f0ebc40a64af3dfd935a91bc674d1 360 Hamap MF_00259 Aminomethyltransferase [gcvT]. 1 355 43.457 T 22-04-2016 IPR022903 Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 PP4_RS26535 4f8f0ebc40a64af3dfd935a91bc674d1 360 PANTHER PTHR13847 5 353 5.7E-58 T 22-04-2016 PP4_RS26535 4f8f0ebc40a64af3dfd935a91bc674d1 360 SUPERFAMILY SSF101790 269 357 1.46E-25 T 22-04-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain PP4_RS26535 4f8f0ebc40a64af3dfd935a91bc674d1 360 PIRSF PIRSF006487 1 358 3.1E-77 T 22-04-2016 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 PP4_RS26535 4f8f0ebc40a64af3dfd935a91bc674d1 360 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 3 354 1.1E-120 T 22-04-2016 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 PP4_RS26535 4f8f0ebc40a64af3dfd935a91bc674d1 360 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 261 350 3.2E-18 T 22-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 PP4_RS26535 4f8f0ebc40a64af3dfd935a91bc674d1 360 Pfam PF01571 Aminomethyltransferase folate-binding domain 7 252 4.9E-80 T 22-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal PP4_RS08660 03687fb4d547ab2954a67e8293552208 1105 TIGRFAM TIGR02456 treS_nterm: trehalose synthase 16 558 2.1E-284 T 22-04-2016 IPR012810 Trehalose synthase/alpha-amylase, N-terminal GO:0003824|GO:0005975 KEGG: 00500+5.4.99.16|MetaCyc: PWY-2622 PP4_RS08660 03687fb4d547ab2954a67e8293552208 1105 SMART SM00642 24 425 5.2E-99 T 22-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 PP4_RS08660 03687fb4d547ab2954a67e8293552208 1105 PANTHER PTHR10357 12 410 6.3E-284 T 22-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 PP4_RS08660 03687fb4d547ab2954a67e8293552208 1105 PANTHER PTHR10357 449 585 6.3E-284 T 22-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 PP4_RS08660 03687fb4d547ab2954a67e8293552208 1105 SUPERFAMILY SSF51445 14 336 6.41E-130 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily PP4_RS08660 03687fb4d547ab2954a67e8293552208 1105 SUPERFAMILY SSF51445 363 470 6.41E-130 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily PP4_RS08660 03687fb4d547ab2954a67e8293552208 1105 SUPERFAMILY SSF56112 754 1048 5.95E-12 T 22-04-2016 IPR011009 Protein kinase-like domain PP4_RS08660 03687fb4d547ab2954a67e8293552208 1105 Gene3D G3DSA:3.20.20.80 18 115 2.2E-107 T 22-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PP4_RS08660 03687fb4d547ab2954a67e8293552208 1105 Gene3D G3DSA:3.20.20.80 452 466 2.2E-107 T 22-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PP4_RS08660 03687fb4d547ab2954a67e8293552208 1105 Gene3D G3DSA:3.20.20.80 192 419 2.2E-107 T 22-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PP4_RS08660 03687fb4d547ab2954a67e8293552208 1105 Pfam PF00128 Alpha amylase, catalytic domain 39 394 6.7E-73 T 22-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 PP4_RS08660 03687fb4d547ab2954a67e8293552208 1105 Gene3D G3DSA:2.60.40.1180 473 558 2.0E-14 T 22-04-2016 IPR013780 Glycosyl hydrolase, all-beta PP4_RS08660 03687fb4d547ab2954a67e8293552208 1105 PANTHER PTHR10357:SF164 12 410 6.3E-284 T 22-04-2016 PP4_RS08660 03687fb4d547ab2954a67e8293552208 1105 PANTHER PTHR10357:SF164 449 585 6.3E-284 T 22-04-2016 PP4_RS08660 03687fb4d547ab2954a67e8293552208 1105 SUPERFAMILY SSF51011 475 556 9.0E-16 T 22-04-2016 PP4_RS08660 03687fb4d547ab2954a67e8293552208 1105 TIGRFAM TIGR02457 TreS_Cterm: putative maltokinase 575 1099 7.3E-214 T 22-04-2016 IPR012811 Trehalose synthase/probable maltokinase, C-terminal domain PP4_RS08660 03687fb4d547ab2954a67e8293552208 1105 Gene3D G3DSA:3.90.400.10 116 184 3.0E-25 T 22-04-2016 PP4_RS08660 03687fb4d547ab2954a67e8293552208 1105 Pfam PF16657 Maltogenic Amylase, C-terminal domain 473 555 3.5E-27 T 22-04-2016 IPR032091 Maltogenic Amylase, C-terminal PP4_RS19305 38209029464789e523c397de697f750a 206 Gene3D G3DSA:3.20.20.70 5 205 9.9E-73 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS19305 38209029464789e523c397de697f750a 206 SUPERFAMILY SSF51366 6 204 9.73E-64 T 22-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 PP4_RS19305 38209029464789e523c397de697f750a 206 Hamap MF_00135 N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 4 206 42.862 T 22-04-2016 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24|UniPathway: UPA00035 PP4_RS19305 38209029464789e523c397de697f750a 206 PANTHER PTHR22854 7 205 2.8E-69 T 22-04-2016 PP4_RS19305 38209029464789e523c397de697f750a 206 Pfam PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase 7 202 4.1E-50 T 22-04-2016 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) GO:0004640|GO:0006568 KEGG: 00400+5.3.1.24|UniPathway: UPA00035 PP4_RS19305 38209029464789e523c397de697f750a 206 PANTHER PTHR22854:SF6 7 205 2.8E-69 T 22-04-2016 PP4_RS22820 7088ab9bd11039c43bed95236d44075c 212 PANTHER PTHR10285 8 197 5.1E-92 T 22-04-2016 PP4_RS22820 7088ab9bd11039c43bed95236d44075c 212 Gene3D G3DSA:3.40.50.2020 7 208 2.2E-73 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like PP4_RS22820 7088ab9bd11039c43bed95236d44075c 212 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 2 208 44.151 T 22-04-2016 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183|UniPathway: UPA00574 PP4_RS22820 7088ab9bd11039c43bed95236d44075c 212 SUPERFAMILY SSF53271 6 206 2.23E-66 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like PP4_RS22820 7088ab9bd11039c43bed95236d44075c 212 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 4 208 2.5E-88 T 22-04-2016 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183|UniPathway: UPA00574 PP4_RS22820 7088ab9bd11039c43bed95236d44075c 212 Pfam PF14681 Uracil phosphoribosyltransferase 7 207 9.6E-64 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like PP4_RS16460 c1e9fa925a045ef32da79dbc25b074b7 470 PRINTS PR01036 Tetracycline resistance protein TetB signature 110 130 8.3E-6 T 22-04-2016 PP4_RS16460 c1e9fa925a045ef32da79dbc25b074b7 470 PRINTS PR01036 Tetracycline resistance protein TetB signature 403 422 8.3E-6 T 22-04-2016 PP4_RS16460 c1e9fa925a045ef32da79dbc25b074b7 470 PRINTS PR01036 Tetracycline resistance protein TetB signature 19 43 8.3E-6 T 22-04-2016 PP4_RS16460 c1e9fa925a045ef32da79dbc25b074b7 470 PRINTS PR01036 Tetracycline resistance protein TetB signature 270 295 8.3E-6 T 22-04-2016 PP4_RS16460 c1e9fa925a045ef32da79dbc25b074b7 470 Pfam PF07690 Major Facilitator Superfamily 20 412 4.9E-50 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS16460 c1e9fa925a045ef32da79dbc25b074b7 470 PANTHER PTHR23501 9 469 2.3E-123 T 22-04-2016 PP4_RS16460 c1e9fa925a045ef32da79dbc25b074b7 470 SUPERFAMILY SSF103473 9 199 4.19E-59 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS16460 c1e9fa925a045ef32da79dbc25b074b7 470 SUPERFAMILY SSF103473 251 459 4.19E-59 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS16460 c1e9fa925a045ef32da79dbc25b074b7 470 PANTHER PTHR23501:SF1 9 469 2.3E-123 T 22-04-2016 PP4_RS16460 c1e9fa925a045ef32da79dbc25b074b7 470 Gene3D G3DSA:1.20.1250.20 18 199 5.6E-33 T 22-04-2016 PP4_RS16460 c1e9fa925a045ef32da79dbc25b074b7 470 Gene3D G3DSA:1.20.1250.20 265 454 3.4E-17 T 22-04-2016 PP4_RS07410 6dada49c948a54b671bf62d2e20e80ce 312 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 109 279 1.1E-45 T 22-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 PP4_RS07410 6dada49c948a54b671bf62d2e20e80ce 312 SUPERFAMILY SSF52283 1 133 3.21E-32 T 22-04-2016 PP4_RS07410 6dada49c948a54b671bf62d2e20e80ce 312 PANTHER PTHR10996 4 310 2.1E-100 T 22-04-2016 PP4_RS07410 6dada49c948a54b671bf62d2e20e80ce 312 Gene3D G3DSA:3.40.50.720 113 280 1.8E-52 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS07410 6dada49c948a54b671bf62d2e20e80ce 312 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 13 310 1.1E-23 T 22-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 PP4_RS07410 6dada49c948a54b671bf62d2e20e80ce 312 PANTHER PTHR10996:SF152 4 310 2.1E-100 T 22-04-2016 PP4_RS07410 6dada49c948a54b671bf62d2e20e80ce 312 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 144 172 - T 22-04-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 PP4_RS07410 6dada49c948a54b671bf62d2e20e80ce 312 Gene3D G3DSA:3.40.50.720 4 112 1.3E-30 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS07410 6dada49c948a54b671bf62d2e20e80ce 312 SUPERFAMILY SSF51735 100 280 1.54E-49 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS27110 2317080effaf87c355eb9b014676a8a7 435 PRINTS PR00344 Bacterial sensor protein C-terminal signature 413 426 5.1E-13 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS27110 2317080effaf87c355eb9b014676a8a7 435 PRINTS PR00344 Bacterial sensor protein C-terminal signature 354 368 5.1E-13 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS27110 2317080effaf87c355eb9b014676a8a7 435 PRINTS PR00344 Bacterial sensor protein C-terminal signature 372 382 5.1E-13 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS27110 2317080effaf87c355eb9b014676a8a7 435 PRINTS PR00344 Bacterial sensor protein C-terminal signature 389 407 5.1E-13 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS27110 2317080effaf87c355eb9b014676a8a7 435 Pfam PF11808 Domain of unknown function (DUF3329) 4 90 9.9E-27 T 22-04-2016 IPR021766 Protein of unknown function DUF3329 GO:0004673 PP4_RS27110 2317080effaf87c355eb9b014676a8a7 435 Pfam PF00989 PAS fold 99 151 6.9E-6 T 22-04-2016 IPR013767 PAS fold GO:0006355 PP4_RS27110 2317080effaf87c355eb9b014676a8a7 435 PANTHER PTHR24423:SF554 40 433 1.2E-169 T 22-04-2016 PP4_RS27110 2317080effaf87c355eb9b014676a8a7 435 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 318 427 7.1E-24 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS27110 2317080effaf87c355eb9b014676a8a7 435 Pfam PF00512 His Kinase A (phospho-acceptor) domain 205 271 8.5E-19 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS27110 2317080effaf87c355eb9b014676a8a7 435 SUPERFAMILY SSF55874 261 425 8.91E-40 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS27110 2317080effaf87c355eb9b014676a8a7 435 TIGRFAM TIGR02966 phoR_proteo: phosphate regulon sensor kinase PhoR 94 425 3.8E-138 T 22-04-2016 IPR014310 Signal transduction histidine kinase, phosphate regulon sensor PhoR GO:0000155|GO:0000160|GO:0004673|GO:0016021 PP4_RS27110 2317080effaf87c355eb9b014676a8a7 435 SUPERFAMILY SSF55785 109 204 5.76E-8 T 22-04-2016 IPR000014 PAS domain PP4_RS27110 2317080effaf87c355eb9b014676a8a7 435 Gene3D G3DSA:1.10.287.130 197 257 4.4E-21 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS27110 2317080effaf87c355eb9b014676a8a7 435 Gene3D G3DSA:3.30.450.20 105 196 2.9E-9 T 22-04-2016 PP4_RS27110 2317080effaf87c355eb9b014676a8a7 435 PANTHER PTHR24423 40 433 1.2E-169 T 22-04-2016 PP4_RS27110 2317080effaf87c355eb9b014676a8a7 435 SMART SM00091 98 164 0.0069 T 22-04-2016 IPR000014 PAS domain PP4_RS27110 2317080effaf87c355eb9b014676a8a7 435 SMART SM00388 205 272 1.8E-20 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS27110 2317080effaf87c355eb9b014676a8a7 435 Gene3D G3DSA:3.30.565.10 258 425 2.0E-41 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS27110 2317080effaf87c355eb9b014676a8a7 435 SUPERFAMILY SSF47384 191 272 1.69E-21 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS27110 2317080effaf87c355eb9b014676a8a7 435 SMART SM00387 317 429 3.4E-32 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS12270 c36c2952a86a2ca9af96f6ec1a09269f 806 SUPERFAMILY SSF103515 504 806 1.19E-41 T 22-04-2016 IPR005546 Autotransporter beta-domain PP4_RS12270 c36c2952a86a2ca9af96f6ec1a09269f 806 SUPERFAMILY SSF51126 21 433 3.14E-27 T 22-04-2016 IPR011050 Pectin lyase fold/virulence factor PP4_RS12270 c36c2952a86a2ca9af96f6ec1a09269f 806 SMART SM00869 531 793 3.5E-41 T 22-04-2016 IPR005546 Autotransporter beta-domain PP4_RS12270 c36c2952a86a2ca9af96f6ec1a09269f 806 Pfam PF03797 Autotransporter beta-domain 533 787 7.1E-47 T 22-04-2016 IPR005546 Autotransporter beta-domain PP4_RS12270 c36c2952a86a2ca9af96f6ec1a09269f 806 Gene3D G3DSA:2.40.128.130 488 806 1.5E-63 T 22-04-2016 IPR005546 Autotransporter beta-domain PP4_RS12270 c36c2952a86a2ca9af96f6ec1a09269f 806 Gene3D G3DSA:2.160.20.20 41 441 6.5E-25 T 22-04-2016 IPR012332 P22 tailspike C-terminal domain-like PP4_RS12270 c36c2952a86a2ca9af96f6ec1a09269f 806 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 318 806 3.3E-71 T 22-04-2016 IPR006315 Outer membrane autotransporter barrel GO:0019867 PP4_RS24780 e550e514970f20c8d95893573a5a3d4d 171 PANTHER PTHR23091 1 170 7.8E-88 T 22-04-2016 PP4_RS24780 e550e514970f20c8d95893573a5a3d4d 171 Pfam PF13420 Acetyltransferase (GNAT) domain 5 156 8.2E-17 T 22-04-2016 PP4_RS24780 e550e514970f20c8d95893573a5a3d4d 171 SUPERFAMILY SSF55729 5 165 5.59E-32 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS24780 e550e514970f20c8d95893573a5a3d4d 171 PANTHER PTHR23091:SF187 1 170 7.8E-88 T 22-04-2016 PP4_RS24780 e550e514970f20c8d95893573a5a3d4d 171 Gene3D G3DSA:3.40.630.30 1 166 2.6E-39 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS08000 a4f259af50f0c5f0fc3c55d83395c720 943 SUPERFAMILY SSF52518 125 550 6.06E-86 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS08000 a4f259af50f0c5f0fc3c55d83395c720 943 Gene3D G3DSA:3.40.50.970 166 541 2.7E-76 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS08000 a4f259af50f0c5f0fc3c55d83395c720 943 PIRSF PIRSF000157 1 943 0.0 T 22-04-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 PP4_RS08000 a4f259af50f0c5f0fc3c55d83395c720 943 Pfam PF16078 2-oxoglutarate dehydrogenase N-terminus 12 50 2.5E-17 T 22-04-2016 IPR032106 2-oxoglutarate dehydrogenase E1 component, N-terminal domain KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 PP4_RS08000 a4f259af50f0c5f0fc3c55d83395c720 943 Pfam PF00676 Dehydrogenase E1 component 223 526 3.6E-51 T 22-04-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 PP4_RS08000 a4f259af50f0c5f0fc3c55d83395c720 943 PANTHER PTHR23152 1 943 0.0 T 22-04-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 PP4_RS08000 a4f259af50f0c5f0fc3c55d83395c720 943 SUPERFAMILY SSF52518 582 799 2.1E-50 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS08000 a4f259af50f0c5f0fc3c55d83395c720 943 SMART SM00861 599 792 1.0E-55 T 22-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain PP4_RS08000 a4f259af50f0c5f0fc3c55d83395c720 943 PANTHER PTHR23152:SF4 1 943 0.0 T 22-04-2016 PP4_RS08000 a4f259af50f0c5f0fc3c55d83395c720 943 Pfam PF02779 Transketolase, pyrimidine binding domain 599 793 2.1E-64 T 22-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain PP4_RS08000 a4f259af50f0c5f0fc3c55d83395c720 943 TIGRFAM TIGR00239 2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component 15 941 0.0 T 22-04-2016 IPR011603 2-oxoglutarate dehydrogenase E1 component GO:0004591|GO:0006099|GO:0030976|GO:0055114 KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 PP4_RS08000 a4f259af50f0c5f0fc3c55d83395c720 943 Gene3D G3DSA:3.40.50.970 661 796 5.0E-20 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS08000 a4f259af50f0c5f0fc3c55d83395c720 943 Pfam PF16870 2-oxoglutarate dehydrogenase C-terminal 797 941 4.3E-53 T 22-04-2016 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal KEGG: 00020+1.2.4.2|KEGG: 00310+1.2.4.2|KEGG: 00380+1.2.4.2|MetaCyc: PWY-5084 PP4_RS12860 3ce6b0c6d815981173a01036fe32a2ae 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 7.7E-36 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS12860 3ce6b0c6d815981173a01036fe32a2ae 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 7.7E-36 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS12860 3ce6b0c6d815981173a01036fe32a2ae 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 7.7E-36 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS12860 3ce6b0c6d815981173a01036fe32a2ae 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 7.7E-36 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS12860 3ce6b0c6d815981173a01036fe32a2ae 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 7.7E-36 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS12860 3ce6b0c6d815981173a01036fe32a2ae 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 7.7E-36 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS12860 3ce6b0c6d815981173a01036fe32a2ae 253 PANTHER PTHR24322 12 184 4.6E-42 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS12860 3ce6b0c6d815981173a01036fe32a2ae 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 135 163 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PP4_RS12860 3ce6b0c6d815981173a01036fe32a2ae 253 SUPERFAMILY SSF51735 6 250 3.66E-67 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS12860 3ce6b0c6d815981173a01036fe32a2ae 253 Gene3D G3DSA:3.40.50.720 1 250 5.2E-67 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS12860 3ce6b0c6d815981173a01036fe32a2ae 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 1.2E-10 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS12860 3ce6b0c6d815981173a01036fe32a2ae 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 1.2E-10 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS12860 3ce6b0c6d815981173a01036fe32a2ae 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 1.2E-10 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS12860 3ce6b0c6d815981173a01036fe32a2ae 253 Pfam PF00106 short chain dehydrogenase 8 184 1.5E-47 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS14850 3f12c3154d426d1ef136295edc4fd136 294 PANTHER PTHR32322:SF9 4 285 1.6E-87 T 22-04-2016 PP4_RS14850 3f12c3154d426d1ef136295edc4fd136 294 SUPERFAMILY SSF103481 40 132 6.15E-11 T 22-04-2016 PP4_RS14850 3f12c3154d426d1ef136295edc4fd136 294 Pfam PF00892 EamA-like transporter family 6 130 1.5E-13 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS14850 3f12c3154d426d1ef136295edc4fd136 294 Pfam PF00892 EamA-like transporter family 140 280 2.0E-18 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS14850 3f12c3154d426d1ef136295edc4fd136 294 SUPERFAMILY SSF103481 183 282 1.26E-11 T 22-04-2016 PP4_RS14850 3f12c3154d426d1ef136295edc4fd136 294 PANTHER PTHR32322 4 285 1.6E-87 T 22-04-2016 PP4_RS04625 bceed7a6374e1b08ead43322bbc9bb5b 306 Gene3D G3DSA:3.40.50.80 187 304 3.4E-16 T 22-04-2016 PP4_RS04625 bceed7a6374e1b08ead43322bbc9bb5b 306 Gene3D G3DSA:3.10.20.30 8 86 3.0E-21 T 22-04-2016 IPR012675 Beta-grasp domain PP4_RS04625 bceed7a6374e1b08ead43322bbc9bb5b 306 Gene3D G3DSA:2.40.30.10 100 180 1.1E-15 T 22-04-2016 PP4_RS04625 bceed7a6374e1b08ead43322bbc9bb5b 306 Pfam PF00175 Oxidoreductase NAD-binding domain 195 243 2.6E-4 T 22-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 PP4_RS04625 bceed7a6374e1b08ead43322bbc9bb5b 306 SUPERFAMILY SSF52343 187 303 1.07E-18 T 22-04-2016 PP4_RS04625 bceed7a6374e1b08ead43322bbc9bb5b 306 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 12 76 3.3E-13 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS04625 bceed7a6374e1b08ead43322bbc9bb5b 306 PANTHER PTHR19370:SF68 30 303 2.0E-43 T 22-04-2016 PP4_RS04625 bceed7a6374e1b08ead43322bbc9bb5b 306 Pfam PF00970 Oxidoreductase FAD-binding domain 106 174 1.3E-4 T 22-04-2016 IPR008333 Oxidoreductase, FAD-binding domain PP4_RS04625 bceed7a6374e1b08ead43322bbc9bb5b 306 PANTHER PTHR19370 30 303 2.0E-43 T 22-04-2016 PP4_RS04625 bceed7a6374e1b08ead43322bbc9bb5b 306 SUPERFAMILY SSF54292 3 84 8.52E-23 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS04625 bceed7a6374e1b08ead43322bbc9bb5b 306 SUPERFAMILY SSF63380 101 179 2.33E-14 T 22-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 PP4_RS11600 411e61ce6025469e4f8bca807cde17aa 550 SMART SM00387 282 404 5.0E-23 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS11600 411e61ce6025469e4f8bca807cde17aa 550 PANTHER PTHR24423 25 544 7.9E-130 T 22-04-2016 PP4_RS11600 411e61ce6025469e4f8bca807cde17aa 550 Pfam PF00072 Response regulator receiver domain 429 540 3.8E-15 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS11600 411e61ce6025469e4f8bca807cde17aa 550 PRINTS PR00344 Bacterial sensor protein C-terminal signature 333 347 7.8E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS11600 411e61ce6025469e4f8bca807cde17aa 550 PRINTS PR00344 Bacterial sensor protein C-terminal signature 364 382 7.8E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS11600 411e61ce6025469e4f8bca807cde17aa 550 PRINTS PR00344 Bacterial sensor protein C-terminal signature 388 401 7.8E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS11600 411e61ce6025469e4f8bca807cde17aa 550 PRINTS PR00344 Bacterial sensor protein C-terminal signature 351 361 7.8E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS11600 411e61ce6025469e4f8bca807cde17aa 550 Pfam PF08448 PAS fold 41 152 1.9E-17 T 22-04-2016 IPR013656 PAS fold-4 PP4_RS11600 411e61ce6025469e4f8bca807cde17aa 550 Gene3D G3DSA:3.40.50.2300 427 545 1.3E-27 T 22-04-2016 PP4_RS11600 411e61ce6025469e4f8bca807cde17aa 550 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 283 403 1.0E-14 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS11600 411e61ce6025469e4f8bca807cde17aa 550 Pfam PF00512 His Kinase A (phospho-acceptor) domain 175 239 3.6E-8 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS11600 411e61ce6025469e4f8bca807cde17aa 550 SUPERFAMILY SSF55874 232 402 8.91E-35 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS11600 411e61ce6025469e4f8bca807cde17aa 550 SMART SM00388 173 241 2.0E-8 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS11600 411e61ce6025469e4f8bca807cde17aa 550 SUPERFAMILY SSF47384 165 239 2.35E-10 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS11600 411e61ce6025469e4f8bca807cde17aa 550 Gene3D G3DSA:3.30.565.10 229 403 4.4E-33 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS11600 411e61ce6025469e4f8bca807cde17aa 550 SMART SM00448 427 540 8.5E-20 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS11600 411e61ce6025469e4f8bca807cde17aa 550 Gene3D G3DSA:3.30.450.20 26 137 8.0E-11 T 22-04-2016 PP4_RS11600 411e61ce6025469e4f8bca807cde17aa 550 SUPERFAMILY SSF52172 428 546 3.13E-24 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS11600 411e61ce6025469e4f8bca807cde17aa 550 PANTHER PTHR24423:SF438 25 544 7.9E-130 T 22-04-2016 PP4_RS11600 411e61ce6025469e4f8bca807cde17aa 550 SUPERFAMILY SSF55785 48 160 2.79E-7 T 22-04-2016 IPR000014 PAS domain PP4_RS11600 411e61ce6025469e4f8bca807cde17aa 550 Gene3D G3DSA:3.30.450.20 138 177 6.4E-5 T 22-04-2016 PP4_RS11600 411e61ce6025469e4f8bca807cde17aa 550 Gene3D G3DSA:1.10.287.130 178 228 1.9E-5 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS22345 e24576dc5778286d4907598260c649dc 180 PANTHER PTHR35603 2 177 3.7E-78 T 22-04-2016 PP4_RS22345 e24576dc5778286d4907598260c649dc 180 Pfam PF05433 Glycine zipper 2TM domain 72 113 3.1E-10 T 22-04-2016 IPR008816 Glycine zipper 2TM domain GO:0019867 PP4_RS22345 e24576dc5778286d4907598260c649dc 180 PANTHER PTHR35603:SF2 2 177 3.7E-78 T 22-04-2016 PP4_RS03155 c1b7107b05c388cba858468f0898f1b7 482 Pfam PF13520 Amino acid permease 63 453 2.7E-43 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS03155 c1b7107b05c388cba858468f0898f1b7 482 PIRSF PIRSF006060 9 479 1.3E-71 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS03155 c1b7107b05c388cba858468f0898f1b7 482 PANTHER PTHR11785 26 461 2.3E-162 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS03155 c1b7107b05c388cba858468f0898f1b7 482 TIGRFAM TIGR00908 2A0305: ethanolamine permease 26 470 2.2E-205 T 22-04-2016 IPR004757 Ethanolamine permease PP4_RS03155 c1b7107b05c388cba858468f0898f1b7 482 PANTHER PTHR11785:SF337 26 461 2.3E-162 T 22-04-2016 PP4_RS07775 9cf3d58ef95ad88643273497b3bfc15d 183 PANTHER PTHR23044:SF5 1 176 1.9E-60 T 22-04-2016 PP4_RS07775 9cf3d58ef95ad88643273497b3bfc15d 183 SUPERFAMILY SSF53098 2 175 5.8E-32 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PP4_RS07775 9cf3d58ef95ad88643273497b3bfc15d 183 SMART SM00479 3 183 8.5E-11 T 22-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III PP4_RS07775 9cf3d58ef95ad88643273497b3bfc15d 183 Pfam PF00929 Exonuclease 5 174 4.6E-19 T 22-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III PP4_RS07775 9cf3d58ef95ad88643273497b3bfc15d 183 Gene3D G3DSA:3.30.420.10 3 174 5.0E-54 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PP4_RS07775 9cf3d58ef95ad88643273497b3bfc15d 183 PANTHER PTHR23044 1 176 1.9E-60 T 22-04-2016 PP4_RS11290 8bddde5e61c7b6777d849e5158938c6d 249 SUPERFAMILY SSF46785 12 84 4.51E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS11290 8bddde5e61c7b6777d849e5158938c6d 249 PANTHER PTHR11751 19 120 1.4E-21 T 22-04-2016 PP4_RS11290 8bddde5e61c7b6777d849e5158938c6d 249 SMART SM00345 21 80 5.1E-19 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS11290 8bddde5e61c7b6777d849e5158938c6d 249 Pfam PF07729 FCD domain 105 231 1.7E-23 T 22-04-2016 IPR011711 GntR, C-terminal PP4_RS11290 8bddde5e61c7b6777d849e5158938c6d 249 Pfam PF00392 Bacterial regulatory proteins, gntR family 18 80 3.8E-19 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS11290 8bddde5e61c7b6777d849e5158938c6d 249 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 40 54 1.5E-6 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS11290 8bddde5e61c7b6777d849e5158938c6d 249 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 54 70 1.5E-6 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS11290 8bddde5e61c7b6777d849e5158938c6d 249 SMART SM00895 104 232 4.7E-23 T 22-04-2016 IPR011711 GntR, C-terminal PP4_RS11290 8bddde5e61c7b6777d849e5158938c6d 249 Gene3D G3DSA:1.10.10.10 11 83 1.3E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS11290 8bddde5e61c7b6777d849e5158938c6d 249 SUPERFAMILY SSF48008 100 240 1.65E-27 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PP4_RS11290 8bddde5e61c7b6777d849e5158938c6d 249 Gene3D G3DSA:1.20.120.530 98 243 2.6E-33 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PP4_RS00130 cc5b206b89076e5126d61399710323a8 327 Pfam PF00535 Glycosyl transferase family 2 16 152 1.0E-26 T 22-04-2016 IPR001173 Glycosyltransferase 2-like PP4_RS00130 cc5b206b89076e5126d61399710323a8 327 Gene3D G3DSA:3.90.550.10 12 141 7.0E-23 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS00130 cc5b206b89076e5126d61399710323a8 327 PANTHER PTHR10859 9 308 7.5E-97 T 22-04-2016 PP4_RS00130 cc5b206b89076e5126d61399710323a8 327 SUPERFAMILY SSF53448 10 244 5.34E-34 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS00130 cc5b206b89076e5126d61399710323a8 327 PANTHER PTHR10859:SF86 9 308 7.5E-97 T 22-04-2016 PP4_RS08625 3a5d5e50129534ca4975657bab066da1 271 PANTHER PTHR11941 1 261 6.8E-104 T 22-04-2016 PP4_RS08625 3a5d5e50129534ca4975657bab066da1 271 PANTHER PTHR11941:SF86 1 261 6.8E-104 T 22-04-2016 PP4_RS08625 3a5d5e50129534ca4975657bab066da1 271 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 105 125 - T 22-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 PP4_RS08625 3a5d5e50129534ca4975657bab066da1 271 SUPERFAMILY SSF52096 11 263 3.04E-70 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS08625 3a5d5e50129534ca4975657bab066da1 271 Pfam PF00378 Enoyl-CoA hydratase/isomerase 15 262 2.6E-46 T 22-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 PP4_RS08625 3a5d5e50129534ca4975657bab066da1 271 Gene3D G3DSA:3.90.226.10 13 205 3.7E-54 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS08625 3a5d5e50129534ca4975657bab066da1 271 Gene3D G3DSA:1.10.12.10 206 262 1.8E-14 T 22-04-2016 IPR014748 Crontonase, C-terminal PP4_RS20960 8d4e803917fe26c6d70b621995470105 427 PANTHER PTHR11807:SF2 12 402 1.4E-72 T 22-04-2016 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 PP4_RS20960 8d4e803917fe26c6d70b621995470105 427 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 14 193 3.5E-50 T 22-04-2016 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 PP4_RS20960 8d4e803917fe26c6d70b621995470105 427 Pfam PF09179 TilS substrate binding domain 245 310 7.2E-11 T 22-04-2016 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 PP4_RS20960 8d4e803917fe26c6d70b621995470105 427 Pfam PF01171 PP-loop family 13 189 2.0E-54 T 22-04-2016 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal PP4_RS20960 8d4e803917fe26c6d70b621995470105 427 SUPERFAMILY SSF52402 11 223 2.21E-62 T 22-04-2016 PP4_RS20960 8d4e803917fe26c6d70b621995470105 427 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 4 319 22.253 T 22-04-2016 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 PP4_RS20960 8d4e803917fe26c6d70b621995470105 427 Gene3D G3DSA:3.40.50.620 14 170 8.5E-13 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS20960 8d4e803917fe26c6d70b621995470105 427 Pfam PF11734 TilS substrate C-terminal domain 352 406 1.2E-14 T 22-04-2016 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 PP4_RS20960 8d4e803917fe26c6d70b621995470105 427 SUPERFAMILY SSF82829 243 316 2.75E-16 T 22-04-2016 PP4_RS20960 8d4e803917fe26c6d70b621995470105 427 SMART SM00977 352 417 4.7E-15 T 22-04-2016 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 PP4_RS20960 8d4e803917fe26c6d70b621995470105 427 SUPERFAMILY SSF56037 323 405 1.2E-17 T 22-04-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 PP4_RS20960 8d4e803917fe26c6d70b621995470105 427 TIGRFAM TIGR02433 lysidine_TilS_C: tRNA(Ile)-lysidine synthetase, C-terminal domain 352 397 2.3E-13 T 22-04-2016 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 PP4_RS20960 8d4e803917fe26c6d70b621995470105 427 PANTHER PTHR11807 12 402 1.4E-72 T 22-04-2016 PP4_RS04480 db15c4a8fb0e6108bfe37b2a39ed28c8 293 Pfam PF11583 P-aminobenzoate N-oxygenase AurF 23 238 3.4E-25 T 22-04-2016 IPR025859 P-aminobenzoate N-oxygenase AurF PP4_RS04480 db15c4a8fb0e6108bfe37b2a39ed28c8 293 Gene3D G3DSA:1.10.555.10 84 181 2.6E-4 T 22-04-2016 IPR000198 Rho GTPase-activating protein domain GO:0007165 Reactome: REACT_11044 PP4_RS14285 8c5037b0dfeef3ec40d01e9814d03cd6 435 PIRSF PIRSF000337 3 435 1.5E-136 T 22-04-2016 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 PP4_RS14285 8c5037b0dfeef3ec40d01e9814d03cd6 435 PANTHER PTHR30011 1 433 5.8E-148 T 22-04-2016 PP4_RS14285 8c5037b0dfeef3ec40d01e9814d03cd6 435 PANTHER PTHR30011:SF18 1 433 5.8E-148 T 22-04-2016 PP4_RS14285 8c5037b0dfeef3ec40d01e9814d03cd6 435 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 9 428 5.8E-151 T 22-04-2016 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 PP4_RS14285 8c5037b0dfeef3ec40d01e9814d03cd6 435 SUPERFAMILY SSF51679 3 433 1.03E-119 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS14285 8c5037b0dfeef3ec40d01e9814d03cd6 435 Pfam PF00296 Luciferase-like monooxygenase 33 385 5.3E-59 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS14285 8c5037b0dfeef3ec40d01e9814d03cd6 435 Gene3D G3DSA:3.20.20.30 349 433 2.4E-121 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS14285 8c5037b0dfeef3ec40d01e9814d03cd6 435 Gene3D G3DSA:3.20.20.30 2 307 2.4E-121 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS21255 bca7ae857982cb75fa00d28aaa79aeea 337 SUPERFAMILY SSF52738 150 335 3.53E-61 T 22-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 PP4_RS21255 bca7ae857982cb75fa00d28aaa79aeea 337 Gene3D G3DSA:3.40.50.2300 1 105 1.7E-22 T 22-04-2016 PP4_RS21255 bca7ae857982cb75fa00d28aaa79aeea 337 SMART SM00448 1 116 2.5E-15 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS21255 bca7ae857982cb75fa00d28aaa79aeea 337 PANTHER PTHR24421:SF16 1 332 7.8E-103 T 22-04-2016 PP4_RS21255 bca7ae857982cb75fa00d28aaa79aeea 337 Pfam PF00072 Response regulator receiver domain 3 102 6.7E-16 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS21255 bca7ae857982cb75fa00d28aaa79aeea 337 PANTHER PTHR24421 1 332 7.8E-103 T 22-04-2016 PP4_RS21255 bca7ae857982cb75fa00d28aaa79aeea 337 PIRSF PIRSF000876 1 337 9.3E-102 T 22-04-2016 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 PP4_RS21255 bca7ae857982cb75fa00d28aaa79aeea 337 SUPERFAMILY SSF52172 1 103 7.83E-21 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS21255 bca7ae857982cb75fa00d28aaa79aeea 337 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 1 336 31.978 T 22-04-2016 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 PP4_RS21255 bca7ae857982cb75fa00d28aaa79aeea 337 Pfam PF01339 CheB methylesterase 155 331 1.0E-55 T 22-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 PP4_RS21255 bca7ae857982cb75fa00d28aaa79aeea 337 Gene3D G3DSA:3.40.50.180 148 335 6.4E-67 T 22-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 PP4_RS08015 43e7c4ad44b60e80894a80830b74657b 388 Pfam PF00549 CoA-ligase 262 382 2.4E-24 T 22-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 PP4_RS08015 43e7c4ad44b60e80894a80830b74657b 388 SUPERFAMILY SSF52210 239 384 2.75E-53 T 22-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 PP4_RS08015 43e7c4ad44b60e80894a80830b74657b 388 PIRSF PIRSF001554 1 388 1.3E-153 T 22-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 PP4_RS08015 43e7c4ad44b60e80894a80830b74657b 388 Gene3D G3DSA:3.40.50.261 240 383 6.0E-66 T 22-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 PP4_RS08015 43e7c4ad44b60e80894a80830b74657b 388 Gene3D G3DSA:3.30.1490.20 21 95 2.2E-34 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 PP4_RS08015 43e7c4ad44b60e80894a80830b74657b 388 SUPERFAMILY SSF56059 1 237 2.36E-80 T 22-04-2016 PP4_RS08015 43e7c4ad44b60e80894a80830b74657b 388 Gene3D G3DSA:3.30.470.20 96 239 2.4E-57 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PP4_RS08015 43e7c4ad44b60e80894a80830b74657b 388 TIGRFAM TIGR01016 sucCoAbeta: succinate-CoA ligase, beta subunit 1 385 7.9E-173 T 22-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 PP4_RS08015 43e7c4ad44b60e80894a80830b74657b 388 Hamap MF_00558 Succinyl-CoA ligase [ADP-forming] subunit beta [sucC]. 1 386 42.353 T 22-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 PP4_RS08015 43e7c4ad44b60e80894a80830b74657b 388 ProSitePatterns PS01217 ATP-citrate lyase / succinyl-CoA ligases family signature 3. 257 282 - T 22-04-2016 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 PP4_RS08015 43e7c4ad44b60e80894a80830b74657b 388 PANTHER PTHR11815 1 388 6.1E-230 T 22-04-2016 IPR005809 Succinyl-CoA synthetase, beta subunit GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: REACT_1046|UniPathway: UPA00223 PP4_RS08015 43e7c4ad44b60e80894a80830b74657b 388 Pfam PF08442 ATP-grasp domain 2 203 3.3E-82 T 22-04-2016 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 PP4_RS03935 e4507888058b70cac1840bc3d0523bc5 326 Pfam PF04773 FecR protein 130 212 7.9E-18 T 22-04-2016 IPR006860 FecR protein PP4_RS03935 e4507888058b70cac1840bc3d0523bc5 326 PANTHER PTHR30273:SF2 6 326 1.1E-59 T 22-04-2016 PP4_RS03935 e4507888058b70cac1840bc3d0523bc5 326 Pfam PF16344 Domain of unknown function (DUF4974) 225 301 1.0E-8 T 22-04-2016 IPR032508 Protein FecR, C-terminal PP4_RS03935 e4507888058b70cac1840bc3d0523bc5 326 Pfam PF16220 Domain of unknown function (DUF4880) 13 54 6.4E-9 T 22-04-2016 IPR032623 FecR, N-terminal PP4_RS03935 e4507888058b70cac1840bc3d0523bc5 326 PIRSF PIRSF018266 2 326 6.7E-80 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS03935 e4507888058b70cac1840bc3d0523bc5 326 PANTHER PTHR30273 6 326 1.1E-59 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS02325 9aa9460e9ccea1e842261d2680c68bd7 215 Gene3D G3DSA:1.20.1260.10 46 183 2.2E-14 T 22-04-2016 IPR012347 Ferritin-related PP4_RS02325 9aa9460e9ccea1e842261d2680c68bd7 215 Pfam PF03232 Ubiquinone biosynthesis protein COQ7 53 212 1.2E-39 T 22-04-2016 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 UniPathway: UPA00232 PP4_RS02325 9aa9460e9ccea1e842261d2680c68bd7 215 PANTHER PTHR11237 1 215 1.1E-129 T 22-04-2016 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 UniPathway: UPA00232 PP4_RS02325 9aa9460e9ccea1e842261d2680c68bd7 215 Hamap MF_01658 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase [coq7]. 14 215 30.573 T 22-04-2016 IPR011566 Ubiquinone biosynthesis protein Coq7 GO:0006744|GO:0055114 UniPathway: UPA00232 PP4_RS02325 9aa9460e9ccea1e842261d2680c68bd7 215 SUPERFAMILY SSF47240 59 186 9.96E-19 T 22-04-2016 IPR009078 Ferritin-like superfamily PP4_RS02325 9aa9460e9ccea1e842261d2680c68bd7 215 PANTHER PTHR11237:SF3 1 215 1.1E-129 T 22-04-2016 PP4_RS22300 09107a577e6da1b39f28f453341bb231 620 SUPERFAMILY SSF100934 505 617 1.69E-32 T 22-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain PP4_RS22300 09107a577e6da1b39f28f453341bb231 620 TIGRFAM TIGR01991 HscA: Fe-S protein assembly chaperone HscA 21 617 1.9E-273 T 22-04-2016 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 PP4_RS22300 09107a577e6da1b39f28f453341bb231 620 Gene3D G3DSA:3.30.420.40 206 238 1.5E-29 T 22-04-2016 PP4_RS22300 09107a577e6da1b39f28f453341bb231 620 Gene3D G3DSA:3.30.420.40 314 356 1.5E-29 T 22-04-2016 PP4_RS22300 09107a577e6da1b39f28f453341bb231 620 Gene3D G3DSA:2.60.34.10 388 528 5.2E-53 T 22-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain PP4_RS22300 09107a577e6da1b39f28f453341bb231 620 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 205 218 - T 22-04-2016 IPR018181 Heat shock protein 70, conserved site PP4_RS22300 09107a577e6da1b39f28f453341bb231 620 SUPERFAMILY SSF53067 200 376 8.19E-48 T 22-04-2016 PP4_RS22300 09107a577e6da1b39f28f453341bb231 620 PRINTS PR00301 70kDa heat shock protein signature 467 483 8.2E-57 T 22-04-2016 IPR013126 Heat shock protein 70 family PP4_RS22300 09107a577e6da1b39f28f453341bb231 620 PRINTS PR00301 70kDa heat shock protein signature 20 33 8.2E-57 T 22-04-2016 IPR013126 Heat shock protein 70 family PP4_RS22300 09107a577e6da1b39f28f453341bb231 620 PRINTS PR00301 70kDa heat shock protein signature 152 172 8.2E-57 T 22-04-2016 IPR013126 Heat shock protein 70 family PP4_RS22300 09107a577e6da1b39f28f453341bb231 620 PRINTS PR00301 70kDa heat shock protein signature 211 221 8.2E-57 T 22-04-2016 IPR013126 Heat shock protein 70 family PP4_RS22300 09107a577e6da1b39f28f453341bb231 620 PRINTS PR00301 70kDa heat shock protein signature 386 405 8.2E-57 T 22-04-2016 IPR013126 Heat shock protein 70 family PP4_RS22300 09107a577e6da1b39f28f453341bb231 620 PRINTS PR00301 70kDa heat shock protein signature 360 380 8.2E-57 T 22-04-2016 IPR013126 Heat shock protein 70 family PP4_RS22300 09107a577e6da1b39f28f453341bb231 620 PRINTS PR00301 70kDa heat shock protein signature 329 345 8.2E-57 T 22-04-2016 IPR013126 Heat shock protein 70 family PP4_RS22300 09107a577e6da1b39f28f453341bb231 620 PRINTS PR00301 70kDa heat shock protein signature 48 60 8.2E-57 T 22-04-2016 IPR013126 Heat shock protein 70 family PP4_RS22300 09107a577e6da1b39f28f453341bb231 620 SUPERFAMILY SSF53067 19 197 1.63E-51 T 22-04-2016 PP4_RS22300 09107a577e6da1b39f28f453341bb231 620 SUPERFAMILY SSF100920 384 535 2.49E-49 T 22-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain PP4_RS22300 09107a577e6da1b39f28f453341bb231 620 Gene3D G3DSA:3.30.30.30 73 117 1.9E-7 T 22-04-2016 PP4_RS22300 09107a577e6da1b39f28f453341bb231 620 Pfam PF00012 Hsp70 protein 21 600 2.8E-181 T 22-04-2016 IPR013126 Heat shock protein 70 family PP4_RS22300 09107a577e6da1b39f28f453341bb231 620 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 332 346 - T 22-04-2016 IPR018181 Heat shock protein 70, conserved site PP4_RS22300 09107a577e6da1b39f28f453341bb231 620 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 105 119 - T 22-04-2016 IPR018181 Heat shock protein 70, conserved site PP4_RS22300 09107a577e6da1b39f28f453341bb231 620 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 24 31 - T 22-04-2016 IPR018181 Heat shock protein 70, conserved site PP4_RS22300 09107a577e6da1b39f28f453341bb231 620 Hamap MF_00679 Chaperone protein HscA [hscA]. 1 618 45.614 T 22-04-2016 IPR010236 ISC system FeS cluster assembly, HscA chaperone GO:0005524|GO:0006457|GO:0016226|GO:0016887|GO:0051082 PP4_RS22300 09107a577e6da1b39f28f453341bb231 620 Gene3D G3DSA:1.20.1270.10 529 617 1.2E-27 T 22-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain PP4_RS22300 09107a577e6da1b39f28f453341bb231 620 Gene3D G3DSA:3.30.420.40 20 72 1.1E-52 T 22-04-2016 PP4_RS22300 09107a577e6da1b39f28f453341bb231 620 Gene3D G3DSA:3.30.420.40 133 205 1.1E-52 T 22-04-2016 PP4_RS22300 09107a577e6da1b39f28f453341bb231 620 PANTHER PTHR19375 19 606 8.1E-301 T 22-04-2016 PP4_RS22300 09107a577e6da1b39f28f453341bb231 620 Gene3D G3DSA:3.90.640.10 239 310 2.2E-5 T 22-04-2016 PP4_RS22300 09107a577e6da1b39f28f453341bb231 620 PANTHER PTHR19375:SF176 19 606 8.1E-301 T 22-04-2016 PP4_RS13945 04352f61953387386f89ee22c523f21c 787 PANTHER PTHR12815:SF11 5 664 1.2E-253 T 22-04-2016 PP4_RS13945 04352f61953387386f89ee22c523f21c 787 PANTHER PTHR12815:SF11 683 787 1.2E-253 T 22-04-2016 PP4_RS13945 04352f61953387386f89ee22c523f21c 787 Pfam PF07244 Surface antigen variable number repeat 347 420 1.2E-13 T 22-04-2016 IPR010827 Surface antigen variable number GO:0019867 PP4_RS13945 04352f61953387386f89ee22c523f21c 787 Pfam PF07244 Surface antigen variable number repeat 92 171 1.2E-13 T 22-04-2016 IPR010827 Surface antigen variable number GO:0019867 PP4_RS13945 04352f61953387386f89ee22c523f21c 787 Pfam PF07244 Surface antigen variable number repeat 265 343 1.6E-13 T 22-04-2016 IPR010827 Surface antigen variable number GO:0019867 PP4_RS13945 04352f61953387386f89ee22c523f21c 787 Pfam PF07244 Surface antigen variable number repeat 175 262 3.3E-17 T 22-04-2016 IPR010827 Surface antigen variable number GO:0019867 PP4_RS13945 04352f61953387386f89ee22c523f21c 787 PIRSF PIRSF006076 1 787 5.0E-267 T 22-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 PP4_RS13945 04352f61953387386f89ee22c523f21c 787 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 23 787 5.3E-262 T 22-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 PP4_RS13945 04352f61953387386f89ee22c523f21c 787 Pfam PF01103 Surface antigen 447 787 4.6E-92 T 22-04-2016 IPR000184 Bacterial surface antigen (D15) GO:0019867 PP4_RS13945 04352f61953387386f89ee22c523f21c 787 Gene3D G3DSA:2.40.160.50 408 787 1.3E-22 T 22-04-2016 PP4_RS13945 04352f61953387386f89ee22c523f21c 787 PANTHER PTHR12815 5 664 1.2E-253 T 22-04-2016 PP4_RS13945 04352f61953387386f89ee22c523f21c 787 PANTHER PTHR12815 683 787 1.2E-253 T 22-04-2016 PP4_RS13945 04352f61953387386f89ee22c523f21c 787 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 8 787 25.524 T 22-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 PP4_RS09700 6b30282ff786be1554ecee5f839fffec 132 Hamap MF_01661 D-ribose pyranase [rbsD]. 1 132 30.863 T 22-04-2016 IPR023064 D-ribose pyranase GO:0016872 UniPathway: UPA00916 PP4_RS09700 6b30282ff786be1554ecee5f839fffec 132 PANTHER PTHR37831:SF1 2 132 6.7E-47 T 22-04-2016 PP4_RS09700 6b30282ff786be1554ecee5f839fffec 132 PANTHER PTHR37831 2 132 6.7E-47 T 22-04-2016 PP4_RS09700 6b30282ff786be1554ecee5f839fffec 132 Pfam PF05025 RbsD / FucU transport protein family 1 131 4.1E-44 T 22-04-2016 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU GO:0005996|GO:0016853|GO:0048029 PP4_RS09700 6b30282ff786be1554ecee5f839fffec 132 SUPERFAMILY SSF102546 1 132 1.44E-41 T 22-04-2016 IPR023750 RbsD-like domain GO:0005996|GO:0016853|GO:0048029 PP4_RS09700 6b30282ff786be1554ecee5f839fffec 132 Gene3D G3DSA:3.40.1650.10 1 132 5.2E-32 T 22-04-2016 IPR023750 RbsD-like domain GO:0005996|GO:0016853|GO:0048029 PP4_RS18120 5fcee06ef90d0b4922b162543f944eae 397 PANTHER PTHR18919 3 397 6.2E-222 T 22-04-2016 PP4_RS18120 5fcee06ef90d0b4922b162543f944eae 397 SUPERFAMILY SSF53901 8 273 3.01E-78 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS18120 5fcee06ef90d0b4922b162543f944eae 397 SUPERFAMILY SSF53901 275 394 1.73E-40 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS18120 5fcee06ef90d0b4922b162543f944eae 397 PIRSF PIRSF000429 2 397 6.3E-114 T 22-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 PP4_RS18120 5fcee06ef90d0b4922b162543f944eae 397 Pfam PF02803 Thiolase, C-terminal domain 274 394 1.8E-42 T 22-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 PP4_RS18120 5fcee06ef90d0b4922b162543f944eae 397 Gene3D G3DSA:3.40.47.10 280 395 1.5E-55 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS18120 5fcee06ef90d0b4922b162543f944eae 397 Gene3D G3DSA:3.40.47.10 146 198 1.5E-55 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS18120 5fcee06ef90d0b4922b162543f944eae 397 ProSitePatterns PS00099 Thiolases active site. 377 390 - T 22-04-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 PP4_RS18120 5fcee06ef90d0b4922b162543f944eae 397 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 10 394 7.0E-127 T 22-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 PP4_RS18120 5fcee06ef90d0b4922b162543f944eae 397 PANTHER PTHR18919:SF110 3 397 6.2E-222 T 22-04-2016 PP4_RS18120 5fcee06ef90d0b4922b162543f944eae 397 Gene3D G3DSA:3.40.47.10 199 279 2.1E-68 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS18120 5fcee06ef90d0b4922b162543f944eae 397 Gene3D G3DSA:3.40.47.10 8 127 2.1E-68 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS18120 5fcee06ef90d0b4922b162543f944eae 397 Pfam PF00108 Thiolase, N-terminal domain 8 266 1.0E-85 T 22-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 PP4_RS09820 dced87b2e0ec8ba2730fa4e338a7c585 492 PANTHER PTHR11474:SF16 82 266 2.5E-26 T 22-04-2016 PP4_RS09820 dced87b2e0ec8ba2730fa4e338a7c585 492 Pfam PF00264 Common central domain of tyrosinase 206 251 1.1E-17 T 22-04-2016 IPR002227 Tyrosinase copper-binding domain GO:0008152|GO:0016491 PP4_RS09820 dced87b2e0ec8ba2730fa4e338a7c585 492 Pfam PF00264 Common central domain of tyrosinase 39 149 1.7E-16 T 22-04-2016 IPR002227 Tyrosinase copper-binding domain GO:0008152|GO:0016491 PP4_RS09820 dced87b2e0ec8ba2730fa4e338a7c585 492 PRINTS PR00092 Tyrosinase copper-binding domain signature 116 121 9.0E-16 T 22-04-2016 IPR002227 Tyrosinase copper-binding domain GO:0008152|GO:0016491 PP4_RS09820 dced87b2e0ec8ba2730fa4e338a7c585 492 PRINTS PR00092 Tyrosinase copper-binding domain signature 209 220 9.0E-16 T 22-04-2016 IPR002227 Tyrosinase copper-binding domain GO:0008152|GO:0016491 PP4_RS09820 dced87b2e0ec8ba2730fa4e338a7c585 492 PRINTS PR00092 Tyrosinase copper-binding domain signature 232 250 9.0E-16 T 22-04-2016 IPR002227 Tyrosinase copper-binding domain GO:0008152|GO:0016491 PP4_RS09820 dced87b2e0ec8ba2730fa4e338a7c585 492 PRINTS PR00092 Tyrosinase copper-binding domain signature 82 99 9.0E-16 T 22-04-2016 IPR002227 Tyrosinase copper-binding domain GO:0008152|GO:0016491 PP4_RS09820 dced87b2e0ec8ba2730fa4e338a7c585 492 ProSitePatterns PS00497 Tyrosinase CuA-binding region signature. 82 99 - T 22-04-2016 IPR002227 Tyrosinase copper-binding domain GO:0008152|GO:0016491 PP4_RS09820 dced87b2e0ec8ba2730fa4e338a7c585 492 SUPERFAMILY SSF48056 5 307 2.62E-42 T 22-04-2016 IPR008922 Uncharacterised domain, di-copper centre PP4_RS09820 dced87b2e0ec8ba2730fa4e338a7c585 492 ProSitePatterns PS00498 Tyrosinase and hemocyanins CuB-binding region signature. 233 244 - T 22-04-2016 IPR002227 Tyrosinase copper-binding domain GO:0008152|GO:0016491 PP4_RS09820 dced87b2e0ec8ba2730fa4e338a7c585 492 PANTHER PTHR11474 82 266 2.5E-26 T 22-04-2016 PP4_RS09820 dced87b2e0ec8ba2730fa4e338a7c585 492 Gene3D G3DSA:1.10.1280.10 5 306 4.5E-43 T 22-04-2016 IPR008922 Uncharacterised domain, di-copper centre PP4_RS02695 711245aa761bf4ad3059b577b960bbea 316 Gene3D G3DSA:1.20.5.480 243 286 1.6E-20 T 22-04-2016 PP4_RS02695 711245aa761bf4ad3059b577b960bbea 316 PANTHER PTHR11938:SF84 1 201 1.3E-108 T 22-04-2016 PP4_RS02695 711245aa761bf4ad3059b577b960bbea 316 Pfam PF09163 Formate dehydrogenase N, transmembrane 242 285 1.2E-22 T 22-04-2016 IPR015246 Formate dehydrogenase, transmembrane PP4_RS02695 711245aa761bf4ad3059b577b960bbea 316 PANTHER PTHR11938 1 201 1.3E-108 T 22-04-2016 PP4_RS02695 711245aa761bf4ad3059b577b960bbea 316 Gene3D G3DSA:3.30.70.20 100 132 1.2E-11 T 22-04-2016 PP4_RS02695 711245aa761bf4ad3059b577b960bbea 316 SUPERFAMILY SSF54862 23 270 2.2E-71 T 22-04-2016 PP4_RS02695 711245aa761bf4ad3059b577b960bbea 316 PIRSF PIRSF036298 1 304 1.4E-158 T 22-04-2016 IPR014603 Formate dehydrogenase iron-sulphur subunit GO:0015944|GO:0045333|GO:0051539 PP4_RS02695 711245aa761bf4ad3059b577b960bbea 316 Pfam PF13247 4Fe-4S dicluster domain 88 184 7.5E-25 T 22-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PP4_RS02695 711245aa761bf4ad3059b577b960bbea 316 Gene3D G3DSA:3.30.70.20 133 168 7.2E-15 T 22-04-2016 PP4_RS02695 711245aa761bf4ad3059b577b960bbea 316 TIGRFAM TIGR01582 FDH-beta: formate dehydrogenase, beta subunit 5 284 1.2E-137 T 22-04-2016 IPR006470 Formate dehydrogenase iron-sulphur subunit, Proteobacteria GO:0015944|GO:0016021|GO:0045333|GO:0051539 PP4_RS02695 711245aa761bf4ad3059b577b960bbea 316 Gene3D G3DSA:3.30.70.20 169 223 2.2E-35 T 22-04-2016 PP4_RS02695 711245aa761bf4ad3059b577b960bbea 316 Gene3D G3DSA:3.30.70.20 24 99 2.2E-35 T 22-04-2016 PP4_RS02695 711245aa761bf4ad3059b577b960bbea 316 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 129 140 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PP4_RS05295 07a0082be2a56b7562fcf13c44c5b423 364 Pfam PF01883 Domain of unknown function DUF59 6 78 3.3E-16 T 22-04-2016 IPR002744 Domain of unknown function DUF59 PP4_RS05295 07a0082be2a56b7562fcf13c44c5b423 364 ProSitePatterns PS01215 Mrp family signature. 206 222 - T 22-04-2016 IPR000808 Mrp, conserved site GO:0005524 PP4_RS05295 07a0082be2a56b7562fcf13c44c5b423 364 Gene3D G3DSA:3.40.50.300 89 342 1.6E-105 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS05295 07a0082be2a56b7562fcf13c44c5b423 364 SUPERFAMILY SSF117916 4 87 8.17E-14 T 22-04-2016 PP4_RS05295 07a0082be2a56b7562fcf13c44c5b423 364 SUPERFAMILY SSF52540 100 348 1.74E-59 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS05295 07a0082be2a56b7562fcf13c44c5b423 364 PANTHER PTHR23264:SF19 1 354 2.3E-161 T 22-04-2016 PP4_RS05295 07a0082be2a56b7562fcf13c44c5b423 364 PANTHER PTHR23264 1 354 2.3E-161 T 22-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein PP4_RS05295 07a0082be2a56b7562fcf13c44c5b423 364 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 97 342 1.7E-100 T 22-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein PP4_RS05295 07a0082be2a56b7562fcf13c44c5b423 364 Hamap MF_02040 Iron-sulfur cluster carrier protein. 93 343 37.209 T 22-04-2016 IPR019591 Mrp/NBP35 ATP-binding protein PP4_RS18795 4b58a3a88cd2c803255977cf2c0e4597 913 Gene3D G3DSA:3.20.19.10 655 911 7.3E-84 T 22-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel PP4_RS18795 4b58a3a88cd2c803255977cf2c0e4597 913 PRINTS PR00415 Aconitase family signature 279 292 6.8E-42 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS18795 4b58a3a88cd2c803255977cf2c0e4597 913 PRINTS PR00415 Aconitase family signature 217 232 6.8E-42 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS18795 4b58a3a88cd2c803255977cf2c0e4597 913 PRINTS PR00415 Aconitase family signature 170 178 6.8E-42 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS18795 4b58a3a88cd2c803255977cf2c0e4597 913 PRINTS PR00415 Aconitase family signature 146 159 6.8E-42 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS18795 4b58a3a88cd2c803255977cf2c0e4597 913 PRINTS PR00415 Aconitase family signature 372 386 6.8E-42 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS18795 4b58a3a88cd2c803255977cf2c0e4597 913 PRINTS PR00415 Aconitase family signature 293 306 6.8E-42 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS18795 4b58a3a88cd2c803255977cf2c0e4597 913 PRINTS PR00415 Aconitase family signature 512 525 6.8E-42 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS18795 4b58a3a88cd2c803255977cf2c0e4597 913 PRINTS PR00415 Aconitase family signature 203 216 6.8E-42 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS18795 4b58a3a88cd2c803255977cf2c0e4597 913 PRINTS PR00415 Aconitase family signature 450 461 6.8E-42 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS18795 4b58a3a88cd2c803255977cf2c0e4597 913 PANTHER PTHR11670:SF1 769 913 0.0 T 22-04-2016 PP4_RS18795 4b58a3a88cd2c803255977cf2c0e4597 913 PANTHER PTHR11670:SF1 8 393 0.0 T 22-04-2016 PP4_RS18795 4b58a3a88cd2c803255977cf2c0e4597 913 PANTHER PTHR11670:SF1 435 669 0.0 T 22-04-2016 PP4_RS18795 4b58a3a88cd2c803255977cf2c0e4597 913 PANTHER PTHR11670:SF1 685 730 0.0 T 22-04-2016 PP4_RS18795 4b58a3a88cd2c803255977cf2c0e4597 913 Pfam PF00694 Aconitase C-terminal domain 710 837 2.4E-50 T 22-04-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS18795 4b58a3a88cd2c803255977cf2c0e4597 913 Pfam PF00330 Aconitase family (aconitate hydratase) 74 581 5.0E-184 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS18795 4b58a3a88cd2c803255977cf2c0e4597 913 TIGRFAM TIGR01341 aconitase_1: aconitate hydratase 1 19 911 0.0 T 22-04-2016 IPR006249 Aconitase/Iron-responsive element-binding protein 2 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00720+4.2.1.3 PP4_RS18795 4b58a3a88cd2c803255977cf2c0e4597 913 Gene3D G3DSA:3.30.499.10 26 249 1.2E-79 T 22-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS18795 4b58a3a88cd2c803255977cf2c0e4597 913 Gene3D G3DSA:3.30.499.10 438 594 2.0E-63 T 22-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS18795 4b58a3a88cd2c803255977cf2c0e4597 913 Gene3D G3DSA:3.30.499.10 369 393 2.0E-63 T 22-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS18795 4b58a3a88cd2c803255977cf2c0e4597 913 ProSitePatterns PS00450 Aconitase family signature 1. 446 462 - T 22-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS18795 4b58a3a88cd2c803255977cf2c0e4597 913 PANTHER PTHR11670 769 913 0.0 T 22-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS18795 4b58a3a88cd2c803255977cf2c0e4597 913 PANTHER PTHR11670 8 393 0.0 T 22-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS18795 4b58a3a88cd2c803255977cf2c0e4597 913 PANTHER PTHR11670 435 669 0.0 T 22-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS18795 4b58a3a88cd2c803255977cf2c0e4597 913 PANTHER PTHR11670 685 730 0.0 T 22-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS18795 4b58a3a88cd2c803255977cf2c0e4597 913 Gene3D G3DSA:3.40.1060.10 250 366 3.0E-36 T 22-04-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS18795 4b58a3a88cd2c803255977cf2c0e4597 913 ProSitePatterns PS01244 Aconitase family signature 2. 512 525 - T 22-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS18795 4b58a3a88cd2c803255977cf2c0e4597 913 SUPERFAMILY SSF53732 4 645 6.93E-226 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS18795 4b58a3a88cd2c803255977cf2c0e4597 913 SUPERFAMILY SSF52016 649 911 1.96E-88 T 22-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel PP4_RS13815 0e32604867c0a1de7d22fbd7e24e897c 1015 PANTHER PTHR11986 582 1010 1.2E-176 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS13815 0e32604867c0a1de7d22fbd7e24e897c 1015 SUPERFAMILY SSF51261 415 542 3.82E-18 T 22-04-2016 IPR011055 Duplicated hybrid motif PP4_RS13815 0e32604867c0a1de7d22fbd7e24e897c 1015 SUPERFAMILY SSF56112 9 327 2.04E-50 T 22-04-2016 IPR011009 Protein kinase-like domain PP4_RS13815 0e32604867c0a1de7d22fbd7e24e897c 1015 Pfam PF01636 Phosphotransferase enzyme family 34 268 1.4E-24 T 22-04-2016 IPR002575 Aminoglycoside phosphotransferase PP4_RS13815 0e32604867c0a1de7d22fbd7e24e897c 1015 Gene3D G3DSA:2.70.70.10 425 542 3.5E-18 T 22-04-2016 PP4_RS13815 0e32604867c0a1de7d22fbd7e24e897c 1015 Gene3D G3DSA:3.40.640.10 642 894 4.7E-68 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS13815 0e32604867c0a1de7d22fbd7e24e897c 1015 Gene3D G3DSA:3.90.1200.10 127 328 3.1E-29 T 22-04-2016 PP4_RS13815 0e32604867c0a1de7d22fbd7e24e897c 1015 SUPERFAMILY SSF53383 589 1010 1.52E-104 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS13815 0e32604867c0a1de7d22fbd7e24e897c 1015 Pfam PF00202 Aminotransferase class-III 610 1008 1.9E-72 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS13815 0e32604867c0a1de7d22fbd7e24e897c 1015 Pfam PF01551 Peptidase family M23 442 542 3.6E-16 T 22-04-2016 IPR016047 Peptidase M23 PP4_RS13815 0e32604867c0a1de7d22fbd7e24e897c 1015 Gene3D G3DSA:3.90.1150.10 895 1010 1.2E-36 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS13815 0e32604867c0a1de7d22fbd7e24e897c 1015 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 823 861 - T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS13815 0e32604867c0a1de7d22fbd7e24e897c 1015 PANTHER PTHR11986:SF23 582 1010 1.2E-176 T 22-04-2016 PP4_RS06240 7fd533837ac187eba19c1d469294f8d2 123 Pfam PF01844 HNH endonuclease 40 88 2.7E-12 T 22-04-2016 IPR002711 HNH endonuclease GO:0003676|GO:0004519 PP4_RS06240 7fd533837ac187eba19c1d469294f8d2 123 SMART SM00507 27 83 0.0018 T 22-04-2016 IPR003615 HNH nuclease PP4_RS19965 a592c0b735014061a432fdb4c8504765 465 SUPERFAMILY SSF46785 6 80 1.47E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS19965 a592c0b735014061a432fdb4c8504765 465 Gene3D G3DSA:3.40.640.10 138 353 2.2E-70 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS19965 a592c0b735014061a432fdb4c8504765 465 PANTHER PTHR11751:SF386 86 457 1.6E-142 T 22-04-2016 PP4_RS19965 a592c0b735014061a432fdb4c8504765 465 SUPERFAMILY SSF53383 98 456 1.01E-86 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS19965 a592c0b735014061a432fdb4c8504765 465 Gene3D G3DSA:1.10.10.10 4 78 4.5E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS19965 a592c0b735014061a432fdb4c8504765 465 Pfam PF00155 Aminotransferase class I and II 110 456 8.5E-44 T 22-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PP4_RS19965 a592c0b735014061a432fdb4c8504765 465 PANTHER PTHR11751 86 457 1.6E-142 T 22-04-2016 PP4_RS19965 a592c0b735014061a432fdb4c8504765 465 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 76 6.8E-16 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS19965 a592c0b735014061a432fdb4c8504765 465 Gene3D G3DSA:3.90.1150.10 354 454 2.5E-7 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS19965 a592c0b735014061a432fdb4c8504765 465 SMART SM00345 17 76 5.9E-15 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS00250 87b74fd46d09560a261e8b45932c74b3 175 Gene3D G3DSA:3.40.50.1000 2 172 1.9E-55 T 22-04-2016 IPR023214 HAD-like domain PP4_RS00250 87b74fd46d09560a261e8b45932c74b3 175 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 2 146 2.2E-34 T 22-04-2016 IPR006549 HAD-superfamily hydrolase,subfamily IIIA PP4_RS00250 87b74fd46d09560a261e8b45932c74b3 175 PANTHER PTHR23133 2 174 4.3E-95 T 22-04-2016 PP4_RS00250 87b74fd46d09560a261e8b45932c74b3 175 PANTHER PTHR23133:SF7 2 174 4.3E-95 T 22-04-2016 PP4_RS00250 87b74fd46d09560a261e8b45932c74b3 175 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 2 145 1.7E-44 T 22-04-2016 IPR006543 Histidinol-phosphate phosphatase GO:0016791 PP4_RS00250 87b74fd46d09560a261e8b45932c74b3 175 PIRSF PIRSF004682 1 173 8.6E-56 T 22-04-2016 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 PP4_RS00250 87b74fd46d09560a261e8b45932c74b3 175 Pfam PF13242 HAD-hyrolase-like 99 168 6.0E-13 T 22-04-2016 PP4_RS00250 87b74fd46d09560a261e8b45932c74b3 175 SUPERFAMILY SSF56784 2 174 2.71E-46 T 22-04-2016 IPR023214 HAD-like domain PP4_RS00510 95f41eed107691fbd6437ec5b6a3e089 210 Gene3D G3DSA:3.40.30.10 10 208 2.1E-54 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS00510 95f41eed107691fbd6437ec5b6a3e089 210 PANTHER PTHR12151:SF0 5 209 1.0E-61 T 22-04-2016 PP4_RS00510 95f41eed107691fbd6437ec5b6a3e089 210 Pfam PF02630 SCO1/SenC 17 185 4.1E-35 T 22-04-2016 IPR003782 Copper chaperone SCO1/SenC PP4_RS00510 95f41eed107691fbd6437ec5b6a3e089 210 PANTHER PTHR12151 5 209 1.0E-61 T 22-04-2016 IPR003782 Copper chaperone SCO1/SenC PP4_RS00510 95f41eed107691fbd6437ec5b6a3e089 210 SUPERFAMILY SSF52833 50 208 2.43E-47 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS06825 eaac8dde9bf6df955e561d149aaaf30b 326 PANTHER PTHR11019:SF25 105 315 8.2E-96 T 22-04-2016 PP4_RS06825 eaac8dde9bf6df955e561d149aaaf30b 326 SMART SM00342 224 307 1.3E-32 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS06825 eaac8dde9bf6df955e561d149aaaf30b 326 PANTHER PTHR11019 105 315 8.2E-96 T 22-04-2016 PP4_RS06825 eaac8dde9bf6df955e561d149aaaf30b 326 Pfam PF12833 Helix-turn-helix domain 230 308 2.1E-23 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS06825 eaac8dde9bf6df955e561d149aaaf30b 326 Gene3D G3DSA:3.40.50.880 84 211 7.3E-18 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS06825 eaac8dde9bf6df955e561d149aaaf30b 326 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 261 303 - T 22-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PP4_RS06825 eaac8dde9bf6df955e561d149aaaf30b 326 SUPERFAMILY SSF52317 5 189 1.74E-21 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS06825 eaac8dde9bf6df955e561d149aaaf30b 326 SUPERFAMILY SSF46689 207 258 1.34E-8 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS06825 eaac8dde9bf6df955e561d149aaaf30b 326 Gene3D G3DSA:1.10.10.60 212 260 1.4E-15 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS06825 eaac8dde9bf6df955e561d149aaaf30b 326 Gene3D G3DSA:1.10.10.60 261 311 2.6E-16 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS06825 eaac8dde9bf6df955e561d149aaaf30b 326 SUPERFAMILY SSF46689 260 311 3.63E-12 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS06825 eaac8dde9bf6df955e561d149aaaf30b 326 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 291 307 9.5E-5 T 22-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PP4_RS06825 eaac8dde9bf6df955e561d149aaaf30b 326 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 276 291 9.5E-5 T 22-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PP4_RS27235 6170e49e55154a8227b7a2cd87b7fe5e 601 PANTHER PTHR18866 1 600 1.4E-241 T 22-04-2016 PP4_RS27235 6170e49e55154a8227b7a2cd87b7fe5e 601 PANTHER PTHR18866:SF109 1 600 1.4E-241 T 22-04-2016 PP4_RS27235 6170e49e55154a8227b7a2cd87b7fe5e 601 Pfam PF00364 Biotin-requiring enzyme 536 599 5.7E-16 T 22-04-2016 IPR000089 Biotin/lipoyl attachment PP4_RS27235 6170e49e55154a8227b7a2cd87b7fe5e 601 Gene3D G3DSA:2.40.50.100 527 600 1.4E-23 T 22-04-2016 PP4_RS27235 6170e49e55154a8227b7a2cd87b7fe5e 601 Gene3D G3DSA:3.20.20.70 1 283 1.8E-118 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS27235 6170e49e55154a8227b7a2cd87b7fe5e 601 SUPERFAMILY SSF89000 297 447 3.61E-49 T 22-04-2016 PP4_RS27235 6170e49e55154a8227b7a2cd87b7fe5e 601 TIGRFAM TIGR01108 oadA: oxaloacetate decarboxylase alpha subunit 7 596 6.4E-251 T 22-04-2016 IPR005776 Oxaloacetate decarboxylase, alpha subunit GO:0006814|GO:0008948 PP4_RS27235 6170e49e55154a8227b7a2cd87b7fe5e 601 Pfam PF02436 Conserved carboxylase domain 292 482 4.1E-55 T 22-04-2016 IPR003379 Carboxylase, conserved domain PP4_RS27235 6170e49e55154a8227b7a2cd87b7fe5e 601 Pfam PF00682 HMGL-like 5 267 3.6E-50 T 22-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 PP4_RS27235 6170e49e55154a8227b7a2cd87b7fe5e 601 SUPERFAMILY SSF51230 526 600 5.23E-21 T 22-04-2016 IPR011053 Single hybrid motif PP4_RS27235 6170e49e55154a8227b7a2cd87b7fe5e 601 SUPERFAMILY SSF51569 1 301 3.3E-91 T 22-04-2016 PP4_RS11400 40261ad944522e2817d3a30b5ad9eefa 86 Pfam PF07865 Protein of unknown function (DUF1652) 7 73 1.2E-26 T 22-04-2016 IPR012448 Protein of unknown function DUF1652 PP4_RS08215 16ad1dc721d1420f99b6c832ba6fe6eb 590 SUPERFAMILY SSF53850 30 584 8.69E-119 T 22-04-2016 PP4_RS08215 16ad1dc721d1420f99b6c832ba6fe6eb 590 PIRSF PIRSF002741 10 587 1.2E-101 T 22-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 PP4_RS08215 16ad1dc721d1420f99b6c832ba6fe6eb 590 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 94 499 1.8E-74 T 22-04-2016 IPR000914 Solute-binding protein family 5 domain PP4_RS08215 16ad1dc721d1420f99b6c832ba6fe6eb 590 Gene3D G3DSA:3.90.76.10 44 209 2.5E-34 T 22-04-2016 PP4_RS08215 16ad1dc721d1420f99b6c832ba6fe6eb 590 Gene3D G3DSA:3.10.105.10 301 554 1.2E-46 T 22-04-2016 PP4_RS08215 16ad1dc721d1420f99b6c832ba6fe6eb 590 PANTHER PTHR30290 4 350 3.1E-208 T 22-04-2016 PP4_RS08215 16ad1dc721d1420f99b6c832ba6fe6eb 590 PANTHER PTHR30290 375 590 3.1E-208 T 22-04-2016 PP4_RS08215 16ad1dc721d1420f99b6c832ba6fe6eb 590 PANTHER PTHR30290:SF2 4 350 3.1E-208 T 22-04-2016 PP4_RS08215 16ad1dc721d1420f99b6c832ba6fe6eb 590 PANTHER PTHR30290:SF2 375 590 3.1E-208 T 22-04-2016 PP4_RS13510 fa86d3af8fc1ca29aba1b9098dd0db91 276 PANTHER PTHR24322 7 41 5.8E-38 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13510 fa86d3af8fc1ca29aba1b9098dd0db91 276 PANTHER PTHR24322 66 157 5.8E-38 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13510 fa86d3af8fc1ca29aba1b9098dd0db91 276 PANTHER PTHR24322 180 211 5.8E-38 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13510 fa86d3af8fc1ca29aba1b9098dd0db91 276 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 180 199 3.9E-7 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13510 fa86d3af8fc1ca29aba1b9098dd0db91 276 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 161 3.9E-7 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13510 fa86d3af8fc1ca29aba1b9098dd0db91 276 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 97 108 3.9E-7 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13510 fa86d3af8fc1ca29aba1b9098dd0db91 276 Gene3D G3DSA:3.40.50.720 3 262 1.5E-52 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS13510 fa86d3af8fc1ca29aba1b9098dd0db91 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 6.8E-19 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13510 fa86d3af8fc1ca29aba1b9098dd0db91 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 163 6.8E-19 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13510 fa86d3af8fc1ca29aba1b9098dd0db91 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 201 218 6.8E-19 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13510 fa86d3af8fc1ca29aba1b9098dd0db91 276 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 199 6.8E-19 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13510 fa86d3af8fc1ca29aba1b9098dd0db91 276 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 167 195 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PP4_RS13510 fa86d3af8fc1ca29aba1b9098dd0db91 276 SUPERFAMILY SSF51735 3 252 1.11E-49 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS13510 fa86d3af8fc1ca29aba1b9098dd0db91 276 Pfam PF00106 short chain dehydrogenase 3 47 1.5E-8 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13510 fa86d3af8fc1ca29aba1b9098dd0db91 276 Pfam PF00106 short chain dehydrogenase 58 220 6.3E-27 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS24775 e7f2deeba525563df9b6111e2789c49a 232 PANTHER PTHR24220 3 232 1.1E-135 T 22-04-2016 PP4_RS24775 e7f2deeba525563df9b6111e2789c49a 232 PANTHER PTHR24220:SF404 3 232 1.1E-135 T 22-04-2016 PP4_RS24775 e7f2deeba525563df9b6111e2789c49a 232 Gene3D G3DSA:3.40.50.300 1 223 1.6E-64 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS24775 e7f2deeba525563df9b6111e2789c49a 232 TIGRFAM TIGR03410 urea_trans_UrtE: urea ABC transporter, ATP-binding protein UrtE 2 232 8.4E-107 T 22-04-2016 IPR017780 ABC transporter, urea, ATP-binding protein, UrtE PP4_RS24775 e7f2deeba525563df9b6111e2789c49a 232 SMART SM00382 26 211 1.7E-9 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS24775 e7f2deeba525563df9b6111e2789c49a 232 SUPERFAMILY SSF52540 2 222 7.32E-60 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS24775 e7f2deeba525563df9b6111e2789c49a 232 Pfam PF00005 ABC transporter 17 161 2.4E-31 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS25400 d0341403e2ffab87b429c9970a9d90b8 411 Pfam PF00999 Sodium/hydrogen exchanger family 8 405 7.3E-63 T 22-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 PP4_RS25400 d0341403e2ffab87b429c9970a9d90b8 411 PANTHER PTHR10110 1 406 1.2E-85 T 22-04-2016 IPR018422 Cation/H+ exchanger, CPA1 family GO:0006812|GO:0015299|GO:0016021 Reactome: REACT_15518 PP4_RS25400 d0341403e2ffab87b429c9970a9d90b8 411 PANTHER PTHR10110:SF86 1 406 1.2E-85 T 22-04-2016 PP4_RS13050 1a2ee764ba8da4caa05f90a92bb4079d 427 Pfam PF07690 Major Facilitator Superfamily 25 333 7.7E-15 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS13050 1a2ee764ba8da4caa05f90a92bb4079d 427 PANTHER PTHR31187 14 418 2.9E-68 T 22-04-2016 IPR004667 ADP/ATP carrier protein GO:0005471|GO:0005524|GO:0006810|GO:0016021 PP4_RS13050 1a2ee764ba8da4caa05f90a92bb4079d 427 SUPERFAMILY SSF103473 22 420 6.41E-36 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS13050 1a2ee764ba8da4caa05f90a92bb4079d 427 PANTHER PTHR31187:SF0 14 418 2.9E-68 T 22-04-2016 PP4_RS13050 1a2ee764ba8da4caa05f90a92bb4079d 427 Gene3D G3DSA:1.20.1250.20 24 211 1.5E-14 T 22-04-2016 PP4_RS13050 1a2ee764ba8da4caa05f90a92bb4079d 427 Gene3D G3DSA:1.20.1250.20 232 413 1.6E-5 T 22-04-2016 PP4_RS06170 0e7d1ec79a011c317fe490e3ce54fa4c 545 Pfam PF00884 Sulfatase 233 521 5.1E-52 T 22-04-2016 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 PP4_RS06170 0e7d1ec79a011c317fe490e3ce54fa4c 545 Pfam PF08019 Domain of unknown function (DUF1705) 54 202 2.2E-50 T 22-04-2016 IPR012549 Domain of unknown function DUF1705 GO:0016021 PP4_RS06170 0e7d1ec79a011c317fe490e3ce54fa4c 545 PANTHER PTHR30443:SF0 1 538 3.5E-258 T 22-04-2016 PP4_RS06170 0e7d1ec79a011c317fe490e3ce54fa4c 545 PANTHER PTHR30443 1 538 3.5E-258 T 22-04-2016 PP4_RS06170 0e7d1ec79a011c317fe490e3ce54fa4c 545 Gene3D G3DSA:3.40.720.10 234 527 1.0E-20 T 22-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 PP4_RS06170 0e7d1ec79a011c317fe490e3ce54fa4c 545 SUPERFAMILY SSF53649 234 533 1.53E-27 T 22-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 PP4_RS20705 02188a3d076b4ec620992122b67a72d1 217 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 7 192 31.954 T 22-04-2016 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|UniPathway: UPA00074 PP4_RS20705 02188a3d076b4ec620992122b67a72d1 217 PANTHER PTHR10520 1 198 2.0E-104 T 22-04-2016 PP4_RS20705 02188a3d076b4ec620992122b67a72d1 217 Pfam PF00551 Formyl transferase 7 186 2.2E-63 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PP4_RS20705 02188a3d076b4ec620992122b67a72d1 217 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 138 161 - T 22-04-2016 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PP4_RS20705 02188a3d076b4ec620992122b67a72d1 217 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 7 195 1.3E-76 T 22-04-2016 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|UniPathway: UPA00074 PP4_RS20705 02188a3d076b4ec620992122b67a72d1 217 Gene3D G3DSA:3.40.50.170 7 199 4.2E-73 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PP4_RS20705 02188a3d076b4ec620992122b67a72d1 217 SUPERFAMILY SSF53328 7 205 1.83E-67 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PP4_RS03790 8f9b7045332c84fe608671e93d08aeb9 430 Gene3D G3DSA:2.30.30.230 9 124 1.6E-33 T 22-04-2016 IPR015377 Fumarylacetoacetase, N-terminal GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 PP4_RS03790 8f9b7045332c84fe608671e93d08aeb9 430 SUPERFAMILY SSF63433 8 122 1.02E-30 T 22-04-2016 IPR015377 Fumarylacetoacetase, N-terminal GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 PP4_RS03790 8f9b7045332c84fe608671e93d08aeb9 430 PANTHER PTHR11820 122 276 6.5E-168 T 22-04-2016 PP4_RS03790 8f9b7045332c84fe608671e93d08aeb9 430 PANTHER PTHR11820 4 95 6.5E-168 T 22-04-2016 PP4_RS03790 8f9b7045332c84fe608671e93d08aeb9 430 PANTHER PTHR11820 297 430 6.5E-168 T 22-04-2016 PP4_RS03790 8f9b7045332c84fe608671e93d08aeb9 430 SUPERFAMILY SSF56529 124 429 2.09E-94 T 22-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 PP4_RS03790 8f9b7045332c84fe608671e93d08aeb9 430 TIGRFAM TIGR01266 fum_ac_acetase: fumarylacetoacetase 9 429 4.4E-193 T 22-04-2016 IPR005959 Fumarylacetoacetase GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 PP4_RS03790 8f9b7045332c84fe608671e93d08aeb9 430 Pfam PF09298 Fumarylacetoacetase N-terminal 23 122 3.6E-23 T 22-04-2016 IPR015377 Fumarylacetoacetase, N-terminal GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 PP4_RS03790 8f9b7045332c84fe608671e93d08aeb9 430 PANTHER PTHR11820:SF1 122 276 6.5E-168 T 22-04-2016 IPR005959 Fumarylacetoacetase GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 PP4_RS03790 8f9b7045332c84fe608671e93d08aeb9 430 PANTHER PTHR11820:SF1 4 95 6.5E-168 T 22-04-2016 IPR005959 Fumarylacetoacetase GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 PP4_RS03790 8f9b7045332c84fe608671e93d08aeb9 430 PANTHER PTHR11820:SF1 297 430 6.5E-168 T 22-04-2016 IPR005959 Fumarylacetoacetase GO:0004334|GO:0009072 KEGG: 00350+3.7.1.2|KEGG: 00643+3.7.1.2|UniPathway: UPA00139 PP4_RS03790 8f9b7045332c84fe608671e93d08aeb9 430 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 128 426 6.2E-58 T 22-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 PP4_RS03790 8f9b7045332c84fe608671e93d08aeb9 430 Gene3D G3DSA:3.90.850.10 125 423 1.7E-105 T 22-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 PP4_RS16380 05cf9145e7516e3275bb25e939a4dd99 460 PANTHER PTHR11785 21 460 1.3E-158 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS16380 05cf9145e7516e3275bb25e939a4dd99 460 PIRSF PIRSF006060 6 455 2.1E-63 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS16380 05cf9145e7516e3275bb25e939a4dd99 460 Pfam PF00324 Amino acid permease 36 386 7.3E-37 T 22-04-2016 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 PP4_RS16380 05cf9145e7516e3275bb25e939a4dd99 460 PANTHER PTHR11785:SF346 21 460 1.3E-158 T 22-04-2016 PP4_RS15190 1c8f8ca4c5c56a9973793f1b19198455 105 Pfam PF15937 prlF antitoxin for toxin YhaV_toxin 8 101 8.9E-17 T 22-04-2016 IPR031848 PrlF antitoxin GO:0001558|GO:0003700|GO:0097351 PP4_RS15190 1c8f8ca4c5c56a9973793f1b19198455 105 ProDom PD030562 SUPPRESSOR HTRA PROTEASE TRANSCRIPTIONAL REGULATOR HTAR SOHA ABRB YDCA BLL1688 7 73 6.0E-8 T 22-04-2016 PP4_RS15190 1c8f8ca4c5c56a9973793f1b19198455 105 SUPERFAMILY SSF89447 3 50 4.53E-11 T 22-04-2016 PP4_RS15190 1c8f8ca4c5c56a9973793f1b19198455 105 Gene3D G3DSA:2.10.260.10 5 50 6.8E-9 T 22-04-2016 PP4_RS15190 1c8f8ca4c5c56a9973793f1b19198455 105 TIGRFAM TIGR01439 lp_hng_hel_AbrB: transcriptional regulator, AbrB family 8 48 2.8E-10 T 22-04-2016 IPR007159 SpoVT-AbrB domain GO:0003677 PP4_RS15190 1c8f8ca4c5c56a9973793f1b19198455 105 SMART SM00966 8 53 2.3E-9 T 22-04-2016 IPR007159 SpoVT-AbrB domain GO:0003677 PP4_RS20875 e0e82f65db1688a94a918513d56a5482 857 SMART SM00534 606 792 1.2E-121 T 22-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 PP4_RS20875 e0e82f65db1688a94a918513d56a5482 857 SUPERFAMILY SSF53150 114 266 4.97E-42 T 22-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 PP4_RS20875 e0e82f65db1688a94a918513d56a5482 857 Gene3D G3DSA:3.40.50.300 568 795 1.1E-81 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS20875 e0e82f65db1688a94a918513d56a5482 857 Pfam PF05188 MutS domain II 128 253 1.2E-28 T 22-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 PP4_RS20875 e0e82f65db1688a94a918513d56a5482 857 Pfam PF05190 MutS family domain IV 427 517 4.0E-27 T 22-04-2016 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 PP4_RS20875 e0e82f65db1688a94a918513d56a5482 857 Gene3D G3DSA:3.30.420.110 126 256 1.4E-42 T 22-04-2016 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 PP4_RS20875 e0e82f65db1688a94a918513d56a5482 857 Pfam PF00488 MutS domain V 609 795 1.1E-83 T 22-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 PP4_RS20875 e0e82f65db1688a94a918513d56a5482 857 Gene3D G3DSA:1.10.1420.10 315 476 8.3E-56 T 22-04-2016 PP4_RS20875 e0e82f65db1688a94a918513d56a5482 857 SUPERFAMILY SSF52540 568 795 1.4E-59 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS20875 e0e82f65db1688a94a918513d56a5482 857 SMART SM00533 283 590 2.6E-105 T 22-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 PP4_RS20875 e0e82f65db1688a94a918513d56a5482 857 SUPERFAMILY SSF55271 2 113 8.76E-44 T 22-04-2016 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 PP4_RS20875 e0e82f65db1688a94a918513d56a5482 857 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 7 854 0.0 T 22-04-2016 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 PP4_RS20875 e0e82f65db1688a94a918513d56a5482 857 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 687 703 - T 22-04-2016 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 PP4_RS20875 e0e82f65db1688a94a918513d56a5482 857 Gene3D G3DSA:3.40.1170.10 3 120 2.4E-52 T 22-04-2016 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 PP4_RS20875 e0e82f65db1688a94a918513d56a5482 857 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 7 849 24.959 T 22-04-2016 IPR005748 DNA mismatch repair protein MutS, type 1 GO:0005524|GO:0006298|GO:0030983 PP4_RS20875 e0e82f65db1688a94a918513d56a5482 857 Pfam PF01624 MutS domain I 8 119 2.3E-43 T 22-04-2016 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 PP4_RS20875 e0e82f65db1688a94a918513d56a5482 857 PANTHER PTHR11361 2 795 0.0 T 22-04-2016 PP4_RS20875 e0e82f65db1688a94a918513d56a5482 857 SUPERFAMILY SSF48334 267 564 2.49E-84 T 22-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 PP4_RS20875 e0e82f65db1688a94a918513d56a5482 857 Pfam PF05192 MutS domain III 270 558 7.3E-37 T 22-04-2016 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 PP4_RS20875 e0e82f65db1688a94a918513d56a5482 857 PANTHER PTHR11361:SF86 2 795 0.0 T 22-04-2016 PP4_RS13635 5385c6df8b6ae37a38a99cc5e566a54b 257 Gene3D G3DSA:3.40.50.720 1 250 1.2E-87 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS13635 5385c6df8b6ae37a38a99cc5e566a54b 257 PANTHER PTHR24321:SF6 3 250 2.2E-48 T 22-04-2016 PP4_RS13635 5385c6df8b6ae37a38a99cc5e566a54b 257 PANTHER PTHR24321 3 250 2.2E-48 T 22-04-2016 PP4_RS13635 5385c6df8b6ae37a38a99cc5e566a54b 257 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 192 0.0016 T 22-04-2016 PP4_RS13635 5385c6df8b6ae37a38a99cc5e566a54b 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 1.1E-11 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13635 5385c6df8b6ae37a38a99cc5e566a54b 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 1.1E-11 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13635 5385c6df8b6ae37a38a99cc5e566a54b 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 1.1E-11 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13635 5385c6df8b6ae37a38a99cc5e566a54b 257 SUPERFAMILY SSF51735 1 249 5.14E-83 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS13635 5385c6df8b6ae37a38a99cc5e566a54b 257 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PP4_RS13635 5385c6df8b6ae37a38a99cc5e566a54b 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 4.3E-42 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13635 5385c6df8b6ae37a38a99cc5e566a54b 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 4.3E-42 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13635 5385c6df8b6ae37a38a99cc5e566a54b 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 212 232 4.3E-42 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13635 5385c6df8b6ae37a38a99cc5e566a54b 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 4.3E-42 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13635 5385c6df8b6ae37a38a99cc5e566a54b 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 4.3E-42 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13635 5385c6df8b6ae37a38a99cc5e566a54b 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 4.3E-42 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13635 5385c6df8b6ae37a38a99cc5e566a54b 257 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 247 7.4E-62 T 22-04-2016 PP4_RS15765 bf52f955c852b94c500c8f3556375b87 562 PANTHER PTHR11552 1 549 8.4E-236 T 22-04-2016 PP4_RS15765 bf52f955c852b94c500c8f3556375b87 562 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 82 105 - T 22-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 PP4_RS15765 bf52f955c852b94c500c8f3556375b87 562 PANTHER PTHR11552:SF51 1 549 8.4E-236 T 22-04-2016 PP4_RS15765 bf52f955c852b94c500c8f3556375b87 562 TIGRFAM TIGR01810 betA: choline dehydrogenase 6 533 1.4E-239 T 22-04-2016 IPR011533 Oxygen-dependent choline dehydrogenase GO:0008812|GO:0019285 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|UniPathway: UPA00529 PP4_RS15765 bf52f955c852b94c500c8f3556375b87 562 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 255 269 - T 22-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 PP4_RS15765 bf52f955c852b94c500c8f3556375b87 562 Gene3D G3DSA:3.50.50.60 466 529 7.7E-122 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS15765 bf52f955c852b94c500c8f3556375b87 562 Gene3D G3DSA:3.50.50.60 2 126 7.7E-122 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS15765 bf52f955c852b94c500c8f3556375b87 562 Gene3D G3DSA:3.50.50.60 188 314 7.7E-122 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS15765 bf52f955c852b94c500c8f3556375b87 562 SUPERFAMILY SSF54373 291 473 1.28E-61 T 22-04-2016 PP4_RS15765 bf52f955c852b94c500c8f3556375b87 562 SUPERFAMILY SSF51905 1 289 2.22E-90 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS15765 bf52f955c852b94c500c8f3556375b87 562 SUPERFAMILY SSF51905 472 531 2.22E-90 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS15765 bf52f955c852b94c500c8f3556375b87 562 Pfam PF05199 GMC oxidoreductase 387 523 8.5E-42 T 22-04-2016 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 PP4_RS15765 bf52f955c852b94c500c8f3556375b87 562 Pfam PF00732 GMC oxidoreductase 5 296 2.4E-95 T 22-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 PP4_RS23025 342d15764505cf2bae4bf70727998d25 404 Gene3D G3DSA:1.20.1250.20 228 398 5.8E-18 T 22-04-2016 PP4_RS23025 342d15764505cf2bae4bf70727998d25 404 PANTHER PTHR23505:SF8 7 400 6.4E-124 T 22-04-2016 PP4_RS23025 342d15764505cf2bae4bf70727998d25 404 SUPERFAMILY SSF103473 19 398 3.53E-51 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS23025 342d15764505cf2bae4bf70727998d25 404 PANTHER PTHR23505 7 400 6.4E-124 T 22-04-2016 PP4_RS23025 342d15764505cf2bae4bf70727998d25 404 Pfam PF07690 Major Facilitator Superfamily 30 269 3.3E-22 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS23025 342d15764505cf2bae4bf70727998d25 404 Gene3D G3DSA:1.20.1250.20 23 195 5.3E-20 T 22-04-2016 PP4_RS21490 ecf4343bf6530b972c3e576ba23a4695 144 SUPERFAMILY SSF54523 36 142 1.99E-39 T 22-04-2016 PP4_RS21490 ecf4343bf6530b972c3e576ba23a4695 144 PANTHER PTHR30093:SF9 1 142 1.6E-67 T 22-04-2016 PP4_RS21490 ecf4343bf6530b972c3e576ba23a4695 144 TIGRFAM TIGR01710 typeII_sec_gspG: type II secretion system protein G 9 143 5.7E-66 T 22-04-2016 IPR010054 General secretion pathway protein G GO:0008565|GO:0015627|GO:0015628 PP4_RS21490 ecf4343bf6530b972c3e576ba23a4695 144 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 8 30 1.7E-7 T 22-04-2016 IPR012902 Prokaryotic N-terminal methylation site PP4_RS21490 ecf4343bf6530b972c3e576ba23a4695 144 PRINTS PR00813 Bacterial general secretion pathway protein G signature 10 35 4.6E-20 T 22-04-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 PP4_RS21490 ecf4343bf6530b972c3e576ba23a4695 144 PRINTS PR00813 Bacterial general secretion pathway protein G signature 46 64 4.6E-20 T 22-04-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 PP4_RS21490 ecf4343bf6530b972c3e576ba23a4695 144 Pfam PF08334 Type II secretion system (T2SS), protein G 34 142 4.4E-43 T 22-04-2016 IPR013545 Type II secretion system protein G PP4_RS21490 ecf4343bf6530b972c3e576ba23a4695 144 Pfam PF13544 Type IV pilin N-term methylation site GFxxxE 5 30 3.3E-9 T 22-04-2016 IPR012902 Prokaryotic N-terminal methylation site PP4_RS21490 ecf4343bf6530b972c3e576ba23a4695 144 Gene3D G3DSA:3.30.700.10 11 75 1.3E-7 T 22-04-2016 PP4_RS21490 ecf4343bf6530b972c3e576ba23a4695 144 PANTHER PTHR30093 1 142 1.6E-67 T 22-04-2016 PP4_RS04815 f42545527490b00d9feabe659efa150b 201 PANTHER PTHR33798:SF4 1 199 2.6E-83 T 22-04-2016 PP4_RS04815 f42545527490b00d9feabe659efa150b 201 PANTHER PTHR33798 1 199 2.6E-83 T 22-04-2016 PP4_RS04815 f42545527490b00d9feabe659efa150b 201 Gene3D G3DSA:2.30.110.10 1 196 7.0E-64 T 22-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 PP4_RS04815 f42545527490b00d9feabe659efa150b 201 SUPERFAMILY SSF50475 2 187 1.42E-49 T 22-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 PP4_RS04815 f42545527490b00d9feabe659efa150b 201 Pfam PF01613 Flavin reductase like domain 23 165 4.5E-17 T 22-04-2016 IPR002563 Flavin reductase like domain GO:0010181 PP4_RS04815 f42545527490b00d9feabe659efa150b 201 SMART SM00903 21 172 5.7E-10 T 22-04-2016 IPR002563 Flavin reductase like domain GO:0010181 PP4_RS06610 f91cd386a13cbfbacd39c6df0dce5869 297 PANTHER PTHR30126 1 281 1.8E-101 T 22-04-2016 PP4_RS06610 f91cd386a13cbfbacd39c6df0dce5869 297 Pfam PF03466 LysR substrate binding domain 85 281 3.5E-42 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS06610 f91cd386a13cbfbacd39c6df0dce5869 297 Gene3D G3DSA:1.10.10.10 2 84 5.1E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS06610 f91cd386a13cbfbacd39c6df0dce5869 297 Gene3D G3DSA:3.40.190.10 178 256 8.7E-12 T 22-04-2016 PP4_RS06610 f91cd386a13cbfbacd39c6df0dce5869 297 PANTHER PTHR30126:SF31 1 281 1.8E-101 T 22-04-2016 PP4_RS06610 f91cd386a13cbfbacd39c6df0dce5869 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 3.6E-19 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS06610 f91cd386a13cbfbacd39c6df0dce5869 297 SUPERFAMILY SSF53850 86 283 1.81E-38 T 22-04-2016 PP4_RS06610 f91cd386a13cbfbacd39c6df0dce5869 297 SUPERFAMILY SSF46785 3 109 2.97E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS06610 f91cd386a13cbfbacd39c6df0dce5869 297 Gene3D G3DSA:3.40.190.10 86 177 8.2E-23 T 22-04-2016 PP4_RS20160 fc6714c8b2fed857bb5f2c44ff094837 750 Hamap MF_00210 3-phosphoshikimate 1-carboxyvinyltransferase [aroA]. 324 743 33.378 T 22-04-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 PP4_RS20160 fc6714c8b2fed857bb5f2c44ff094837 750 SUPERFAMILY SSF51735 15 186 1.72E-45 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS20160 fc6714c8b2fed857bb5f2c44ff094837 750 PANTHER PTHR21090 321 744 5.3E-182 T 22-04-2016 PP4_RS20160 fc6714c8b2fed857bb5f2c44ff094837 750 Pfam PF02153 Prephenate dehydrogenase 28 288 3.0E-72 T 22-04-2016 IPR003099 Prephenate dehydrogenase GO:0004665|GO:0006571|GO:0008977|GO:0055114 KEGG: 00400+1.3.1.12|KEGG: 00401+1.3.1.12|MetaCyc: PWY-7303 PP4_RS20160 fc6714c8b2fed857bb5f2c44ff094837 750 ProSitePatterns PS00885 EPSP synthase signature 2. 655 673 - T 22-04-2016 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 PP4_RS20160 fc6714c8b2fed857bb5f2c44ff094837 750 Gene3D G3DSA:3.65.10.10 336 545 1.8E-64 T 22-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 PP4_RS20160 fc6714c8b2fed857bb5f2c44ff094837 750 TIGRFAM TIGR01356 aroA: 3-phosphoshikimate 1-carboxyvinyltransferase 328 741 2.6E-126 T 22-04-2016 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase GO:0003866 KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 PP4_RS20160 fc6714c8b2fed857bb5f2c44ff094837 750 Gene3D G3DSA:3.40.50.720 9 196 3.9E-36 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS20160 fc6714c8b2fed857bb5f2c44ff094837 750 PANTHER PTHR21090:SF5 321 744 5.3E-182 T 22-04-2016 PP4_RS20160 fc6714c8b2fed857bb5f2c44ff094837 750 ProSitePatterns PS00104 EPSP synthase signature 1. 403 417 - T 22-04-2016 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site KEGG: 00400+2.5.1.19|MetaCyc: PWY-6163|UniPathway: UPA00053 PP4_RS20160 fc6714c8b2fed857bb5f2c44ff094837 750 Gene3D G3DSA:3.65.10.10 546 742 8.4E-55 T 22-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 PP4_RS20160 fc6714c8b2fed857bb5f2c44ff094837 750 SUPERFAMILY SSF55205 319 742 5.76E-134 T 22-04-2016 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 PP4_RS20160 fc6714c8b2fed857bb5f2c44ff094837 750 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 321 734 1.3E-116 T 22-04-2016 IPR001986 Enolpyruvate transferase domain GO:0016765 PP4_RS20160 fc6714c8b2fed857bb5f2c44ff094837 750 SUPERFAMILY SSF48179 191 298 8.16E-35 T 22-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PP4_RS19600 89f1e2b5999d7d94df6dbc1dbc2c00cb 310 PANTHER PTHR24220:SF305 6 302 3.7E-168 T 22-04-2016 PP4_RS19600 89f1e2b5999d7d94df6dbc1dbc2c00cb 310 SUPERFAMILY SSF52540 4 232 1.13E-61 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS19600 89f1e2b5999d7d94df6dbc1dbc2c00cb 310 SMART SM00382 30 228 3.3E-11 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS19600 89f1e2b5999d7d94df6dbc1dbc2c00cb 310 Gene3D G3DSA:3.40.50.300 2 228 2.0E-68 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS19600 89f1e2b5999d7d94df6dbc1dbc2c00cb 310 PANTHER PTHR24220 6 302 3.7E-168 T 22-04-2016 PP4_RS19600 89f1e2b5999d7d94df6dbc1dbc2c00cb 310 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS19600 89f1e2b5999d7d94df6dbc1dbc2c00cb 310 Pfam PF00005 ABC transporter 21 165 4.3E-30 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS03640 a642f41d7063a7742680270ae5d151c2 258 PRINTS PR00410 Phenol hydroxylase reductase family signature 219 227 6.2E-5 T 22-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PP4_RS03640 a642f41d7063a7742680270ae5d151c2 258 PRINTS PR00410 Phenol hydroxylase reductase family signature 116 135 6.2E-5 T 22-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PP4_RS03640 a642f41d7063a7742680270ae5d151c2 258 PRINTS PR00410 Phenol hydroxylase reductase family signature 36 48 6.2E-5 T 22-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PP4_RS03640 a642f41d7063a7742680270ae5d151c2 258 SUPERFAMILY SSF63380 8 104 2.15E-21 T 22-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 PP4_RS03640 a642f41d7063a7742680270ae5d151c2 258 SUPERFAMILY SSF52343 110 256 1.28E-34 T 22-04-2016 PP4_RS03640 a642f41d7063a7742680270ae5d151c2 258 PANTHER PTHR19370:SF98 1 242 1.5E-106 T 22-04-2016 PP4_RS03640 a642f41d7063a7742680270ae5d151c2 258 Pfam PF00970 Oxidoreductase FAD-binding domain 23 95 3.2E-7 T 22-04-2016 IPR008333 Oxidoreductase, FAD-binding domain PP4_RS03640 a642f41d7063a7742680270ae5d151c2 258 Pfam PF00175 Oxidoreductase NAD-binding domain 117 233 4.5E-13 T 22-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 PP4_RS03640 a642f41d7063a7742680270ae5d151c2 258 PANTHER PTHR19370 1 242 1.5E-106 T 22-04-2016 PP4_RS03640 a642f41d7063a7742680270ae5d151c2 258 Gene3D G3DSA:3.40.50.80 103 258 2.2E-45 T 22-04-2016 PP4_RS03640 a642f41d7063a7742680270ae5d151c2 258 Gene3D G3DSA:2.40.30.10 7 97 5.5E-26 T 22-04-2016 PP4_RS03640 a642f41d7063a7742680270ae5d151c2 258 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 116 135 2.1E-5 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS03640 a642f41d7063a7742680270ae5d151c2 258 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 219 227 2.1E-5 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS03640 a642f41d7063a7742680270ae5d151c2 258 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 56 63 2.1E-5 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS05555 54a35c45f82b551b1346f3f4bf9b3875 252 Gene3D G3DSA:3.40.50.720 2 251 1.1E-76 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS05555 54a35c45f82b551b1346f3f4bf9b3875 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 2.6E-31 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS05555 54a35c45f82b551b1346f3f4bf9b3875 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 2.6E-31 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS05555 54a35c45f82b551b1346f3f4bf9b3875 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 2.6E-31 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS05555 54a35c45f82b551b1346f3f4bf9b3875 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 2.6E-31 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS05555 54a35c45f82b551b1346f3f4bf9b3875 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 2.6E-31 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS05555 54a35c45f82b551b1346f3f4bf9b3875 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 2.6E-31 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS05555 54a35c45f82b551b1346f3f4bf9b3875 252 SUPERFAMILY SSF51735 4 251 1.07E-72 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS05555 54a35c45f82b551b1346f3f4bf9b3875 252 PANTHER PTHR24322 157 188 5.8E-42 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS05555 54a35c45f82b551b1346f3f4bf9b3875 252 PANTHER PTHR24322 8 141 5.8E-42 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS05555 54a35c45f82b551b1346f3f4bf9b3875 252 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 10 250 1.4E-57 T 22-04-2016 PP4_RS05555 54a35c45f82b551b1346f3f4bf9b3875 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 1.2E-7 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS05555 54a35c45f82b551b1346f3f4bf9b3875 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 1.2E-7 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS05555 54a35c45f82b551b1346f3f4bf9b3875 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 1.2E-7 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13450 aac1d1b17b60b4ab722cb86982563bdb 280 Gene3D G3DSA:3.10.129.10 87 137 7.7E-4 T 22-04-2016 IPR029069 HotDog domain PP4_RS13450 aac1d1b17b60b4ab722cb86982563bdb 280 SUPERFAMILY SSF54637 165 265 1.26E-14 T 22-04-2016 IPR029069 HotDog domain PP4_RS13450 aac1d1b17b60b4ab722cb86982563bdb 280 SUPERFAMILY SSF54637 38 147 9.76E-8 T 22-04-2016 IPR029069 HotDog domain PP4_RS13450 aac1d1b17b60b4ab722cb86982563bdb 280 PANTHER PTHR28152 12 277 2.0E-66 T 22-04-2016 PP4_RS13450 aac1d1b17b60b4ab722cb86982563bdb 280 Gene3D G3DSA:3.10.129.10 166 265 6.2E-7 T 22-04-2016 IPR029069 HotDog domain PP4_RS13450 aac1d1b17b60b4ab722cb86982563bdb 280 Pfam PF13452 N-terminal half of MaoC dehydratase 72 134 3.3E-8 T 22-04-2016 PP4_RS13680 d6928947c4f5553a436126515acf1a51 389 Gene3D G3DSA:1.20.140.10 215 387 2.5E-35 T 22-04-2016 PP4_RS13680 d6928947c4f5553a436126515acf1a51 389 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 122 212 5.2E-16 T 22-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 PP4_RS13680 d6928947c4f5553a436126515acf1a51 389 SUPERFAMILY SSF47203 227 386 2.26E-21 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS13680 d6928947c4f5553a436126515acf1a51 389 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 118 8.7E-21 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS13680 d6928947c4f5553a436126515acf1a51 389 Gene3D G3DSA:1.10.540.10 4 119 1.1E-24 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS13680 d6928947c4f5553a436126515acf1a51 389 SUPERFAMILY SSF56645 4 239 2.23E-59 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 PP4_RS13680 d6928947c4f5553a436126515acf1a51 389 PANTHER PTHR10909:SF293 1 389 5.5E-110 T 22-04-2016 PP4_RS13680 d6928947c4f5553a436126515acf1a51 389 PANTHER PTHR10909 1 389 5.5E-110 T 22-04-2016 PP4_RS13680 d6928947c4f5553a436126515acf1a51 389 Gene3D G3DSA:2.40.110.10 121 214 7.8E-28 T 22-04-2016 PP4_RS13680 d6928947c4f5553a436126515acf1a51 389 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 379 3.0E-25 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS19515 29124e650b74189813280f5532f07928 326 PANTHER PTHR30100 1 326 1.1E-122 T 22-04-2016 PP4_RS19515 29124e650b74189813280f5532f07928 326 Gene3D G3DSA:3.40.718.10 1 323 7.2E-123 T 22-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 PP4_RS19515 29124e650b74189813280f5532f07928 326 PIRSF PIRSF002465 1 326 1.8E-118 T 22-04-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 UniPathway: UPA00085 PP4_RS19515 29124e650b74189813280f5532f07928 326 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 1 324 1.7E-99 T 22-04-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 UniPathway: UPA00085 PP4_RS19515 29124e650b74189813280f5532f07928 326 PANTHER PTHR30100:SF1 1 326 1.1E-122 T 22-04-2016 PP4_RS19515 29124e650b74189813280f5532f07928 326 Pfam PF02504 Fatty acid synthesis protein 1 314 3.7E-96 T 22-04-2016 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 UniPathway: UPA00085 PP4_RS19515 29124e650b74189813280f5532f07928 326 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 326 140.776 T 22-04-2016 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 UniPathway: UPA00085 PP4_RS19515 29124e650b74189813280f5532f07928 326 SUPERFAMILY SSF53659 1 324 4.52E-100 T 22-04-2016 PP4_RS10950 5c44bc6a5d339b05853f3876a6746826 334 Gene3D G3DSA:1.10.260.40 6 58 1.6E-22 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS10950 5c44bc6a5d339b05853f3876a6746826 334 Pfam PF13377 Periplasmic binding protein-like domain 173 329 2.2E-34 T 22-04-2016 PP4_RS10950 5c44bc6a5d339b05853f3876a6746826 334 Gene3D G3DSA:3.40.50.2300 59 177 2.1E-26 T 22-04-2016 PP4_RS10950 5c44bc6a5d339b05853f3876a6746826 334 SUPERFAMILY SSF47413 5 63 2.22E-16 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS10950 5c44bc6a5d339b05853f3876a6746826 334 SUPERFAMILY SSF53822 62 323 6.87E-51 T 22-04-2016 IPR028082 Periplasmic binding protein-like I PP4_RS10950 5c44bc6a5d339b05853f3876a6746826 334 PANTHER PTHR30146 6 329 4.6E-87 T 22-04-2016 PP4_RS10950 5c44bc6a5d339b05853f3876a6746826 334 Pfam PF00356 Bacterial regulatory proteins, lacI family 7 52 4.9E-15 T 22-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PP4_RS10950 5c44bc6a5d339b05853f3876a6746826 334 SMART SM00354 5 75 4.0E-22 T 22-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PP4_RS10950 5c44bc6a5d339b05853f3876a6746826 334 Gene3D G3DSA:3.40.50.2300 178 307 7.2E-40 T 22-04-2016 PP4_RS18735 d68aff88cbf5090593d7db49fea23ec9 219 Gene3D G3DSA:3.40.50.2300 2 121 1.1E-31 T 22-04-2016 PP4_RS18735 d68aff88cbf5090593d7db49fea23ec9 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 155 169 1.9E-12 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS18735 d68aff88cbf5090593d7db49fea23ec9 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 185 197 1.9E-12 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS18735 d68aff88cbf5090593d7db49fea23ec9 219 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 169 185 1.9E-12 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS18735 d68aff88cbf5090593d7db49fea23ec9 219 SUPERFAMILY SSF52172 2 135 2.28E-30 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS18735 d68aff88cbf5090593d7db49fea23ec9 219 PANTHER PTHR26402:SF458 3 219 2.9E-63 T 22-04-2016 PP4_RS18735 d68aff88cbf5090593d7db49fea23ec9 219 SUPERFAMILY SSF46894 139 216 5.1E-20 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS18735 d68aff88cbf5090593d7db49fea23ec9 219 Pfam PF00196 Bacterial regulatory proteins, luxR family 154 209 9.3E-18 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS18735 d68aff88cbf5090593d7db49fea23ec9 219 Pfam PF00072 Response regulator receiver domain 6 116 4.5E-26 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS18735 d68aff88cbf5090593d7db49fea23ec9 219 Gene3D G3DSA:1.10.10.10 122 216 2.0E-26 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS18735 d68aff88cbf5090593d7db49fea23ec9 219 PANTHER PTHR26402 3 219 2.9E-63 T 22-04-2016 PP4_RS18735 d68aff88cbf5090593d7db49fea23ec9 219 SMART SM00421 152 209 1.7E-19 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS18735 d68aff88cbf5090593d7db49fea23ec9 219 SMART SM00448 3 116 3.0E-29 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS21695 27450273a89244ec07ee9fb883730a4b 170 Gene3D G3DSA:1.10.1740.10 5 75 5.1E-14 T 22-04-2016 PP4_RS21695 27450273a89244ec07ee9fb883730a4b 170 SUPERFAMILY SSF88659 95 161 6.11E-12 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS21695 27450273a89244ec07ee9fb883730a4b 170 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 16 159 1.3E-24 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS21695 27450273a89244ec07ee9fb883730a4b 170 Gene3D G3DSA:1.10.10.10 106 155 2.4E-10 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS21695 27450273a89244ec07ee9fb883730a4b 170 PANTHER PTHR30173 6 162 1.0E-27 T 22-04-2016 PP4_RS21695 27450273a89244ec07ee9fb883730a4b 170 Pfam PF04542 Sigma-70 region 2 17 74 8.6E-12 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS21695 27450273a89244ec07ee9fb883730a4b 170 Pfam PF08281 Sigma-70, region 4 116 157 1.1E-12 T 22-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS21695 27450273a89244ec07ee9fb883730a4b 170 SUPERFAMILY SSF88946 5 88 1.37E-15 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS25230 6ae8a66242a145f99b34c763375aee15 298 SUPERFAMILY SSF55729 139 291 9.0E-17 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS25230 6ae8a66242a145f99b34c763375aee15 298 Pfam PF07395 Mig-14 35 297 9.9E-144 T 22-04-2016 IPR009977 Mig-14 PP4_RS25230 6ae8a66242a145f99b34c763375aee15 298 PIRSF PIRSF029703 1 298 2.3E-133 T 22-04-2016 IPR009977 Mig-14 PP4_RS03300 7389c1a8875793196a7bb0cbe34fc58b 554 Gene3D G3DSA:3.10.20.310 70 146 1.1E-13 T 22-04-2016 PP4_RS03300 7389c1a8875793196a7bb0cbe34fc58b 554 Pfam PF08479 POTRA domain, ShlB-type 73 146 2.4E-21 T 22-04-2016 IPR013686 Polypeptide-transport-associated, ShlB-type PP4_RS03300 7389c1a8875793196a7bb0cbe34fc58b 554 PANTHER PTHR34597 70 554 1.5E-41 T 22-04-2016 PP4_RS03300 7389c1a8875793196a7bb0cbe34fc58b 554 PANTHER PTHR34597:SF1 70 554 1.5E-41 T 22-04-2016 PP4_RS03300 7389c1a8875793196a7bb0cbe34fc58b 554 Gene3D G3DSA:2.40.160.50 181 553 9.5E-45 T 22-04-2016 PP4_RS13415 7c68d3d16eb5c5acccddcdb4982d550a 307 Gene3D G3DSA:3.40.190.10 90 176 1.5E-11 T 22-04-2016 PP4_RS13415 7c68d3d16eb5c5acccddcdb4982d550a 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 61 1.4E-21 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS13415 7c68d3d16eb5c5acccddcdb4982d550a 307 Gene3D G3DSA:3.40.190.10 177 266 1.4E-18 T 22-04-2016 PP4_RS13415 7c68d3d16eb5c5acccddcdb4982d550a 307 Gene3D G3DSA:1.10.10.10 1 83 2.2E-28 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS13415 7c68d3d16eb5c5acccddcdb4982d550a 307 SUPERFAMILY SSF53850 90 297 1.76E-42 T 22-04-2016 PP4_RS13415 7c68d3d16eb5c5acccddcdb4982d550a 307 SUPERFAMILY SSF46785 1 110 3.77E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS13415 7c68d3d16eb5c5acccddcdb4982d550a 307 Pfam PF03466 LysR substrate binding domain 88 285 7.0E-41 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS13415 7c68d3d16eb5c5acccddcdb4982d550a 307 PANTHER PTHR30293 1 302 8.6E-71 T 22-04-2016 PP4_RS13415 7c68d3d16eb5c5acccddcdb4982d550a 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.1E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS13415 7c68d3d16eb5c5acccddcdb4982d550a 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.1E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS13415 7c68d3d16eb5c5acccddcdb4982d550a 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.1E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS25830 ad22abbde6d0858a0490629484deec1e 218 ProSitePatterns PS01081 TetR-type HTH domain signature. 26 57 - T 22-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site PP4_RS25830 ad22abbde6d0858a0490629484deec1e 218 SUPERFAMILY SSF46689 5 79 6.67E-14 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS25830 ad22abbde6d0858a0490629484deec1e 218 Pfam PF13977 Bacterial transcriptional repressor 84 192 8.0E-32 T 22-04-2016 PP4_RS25830 ad22abbde6d0858a0490629484deec1e 218 TIGRFAM TIGR03384 betaine_BetI: transcriptional repressor BetI 2 192 2.8E-72 T 22-04-2016 IPR017757 Transcriptional repressor BetI UniPathway: UPA00529 PP4_RS25830 ad22abbde6d0858a0490629484deec1e 218 PANTHER PTHR30055 1 195 3.0E-109 T 22-04-2016 PP4_RS25830 ad22abbde6d0858a0490629484deec1e 218 Gene3D G3DSA:1.10.357.10 1 194 1.1E-43 T 22-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PP4_RS25830 ad22abbde6d0858a0490629484deec1e 218 PANTHER PTHR30055:SF61 1 195 3.0E-109 T 22-04-2016 PP4_RS25830 ad22abbde6d0858a0490629484deec1e 218 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 59 1.4E-8 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS25830 ad22abbde6d0858a0490629484deec1e 218 SUPERFAMILY SSF48498 81 194 4.89E-19 T 22-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal PP4_RS25830 ad22abbde6d0858a0490629484deec1e 218 Hamap MF_00768 HTH-type transcriptional regulator BetI [betI]. 1 198 108.159 T 22-04-2016 IPR017757 Transcriptional repressor BetI UniPathway: UPA00529 PP4_RS13685 5b9eb4a246920cd842a81b7f9bc43204 392 SUPERFAMILY SSF53901 265 367 1.23E-9 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS13685 5b9eb4a246920cd842a81b7f9bc43204 392 Gene3D G3DSA:3.40.47.10 202 234 3.9E-11 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS13685 5b9eb4a246920cd842a81b7f9bc43204 392 Gene3D G3DSA:3.40.47.10 26 113 3.9E-11 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS13685 5b9eb4a246920cd842a81b7f9bc43204 392 SUPERFAMILY SSF53901 8 236 3.99E-25 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS13685 5b9eb4a246920cd842a81b7f9bc43204 392 PANTHER PTHR18919:SF108 5 381 2.9E-105 T 22-04-2016 PP4_RS13685 5b9eb4a246920cd842a81b7f9bc43204 392 PIRSF PIRSF000429 5 344 6.7E-13 T 22-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 PP4_RS13685 5b9eb4a246920cd842a81b7f9bc43204 392 PANTHER PTHR18919 5 381 2.9E-105 T 22-04-2016 PP4_RS07840 1a152585cba076ed9693af7b436af0e9 205 Pfam PF08887 GAD-like domain 3 107 6.7E-47 T 22-04-2016 IPR014983 GAD-related PP4_RS07840 1a152585cba076ed9693af7b436af0e9 205 Pfam PF08906 Domain of unknown function (DUF1851) 126 195 3.4E-23 T 22-04-2016 IPR015002 Domain of unknown function DUF1851 PP4_RS00690 caaff1ed41f7457bcaaa37f4ba937389 256 Pfam PF03741 Integral membrane protein TerC family 14 204 6.6E-52 T 22-04-2016 IPR005496 Integral membrane protein TerC GO:0016021 PP4_RS00690 caaff1ed41f7457bcaaa37f4ba937389 256 PANTHER PTHR30060:SF1 1 244 7.9E-123 T 22-04-2016 PP4_RS00690 caaff1ed41f7457bcaaa37f4ba937389 256 PANTHER PTHR30060 1 244 7.9E-123 T 22-04-2016 PP4_RS22940 40176e16103bd4487f2410aac3d08a7c 340 Pfam PF11168 Protein of unknown function (DUF2955) 9 149 7.3E-34 T 22-04-2016 IPR022604 Protein of unknown function DUF2955 PP4_RS02400 8e5a218279b906618c958c8d6502c8a5 319 PANTHER PTHR12835 1 315 1.3E-70 T 22-04-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 PP4_RS02400 8e5a218279b906618c958c8d6502c8a5 319 Pfam PF03099 Biotin/lipoate A/B protein ligase family 95 206 1.4E-17 T 22-04-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 PP4_RS02400 8e5a218279b906618c958c8d6502c8a5 319 SUPERFAMILY SSF50037 268 314 1.19E-8 T 22-04-2016 IPR008988 Transcriptional repressor, C-terminal PP4_RS02400 8e5a218279b906618c958c8d6502c8a5 319 Pfam PF08279 HTH domain 3 54 1.6E-10 T 22-04-2016 IPR013196 Helix-turn-helix, type 11 PP4_RS02400 8e5a218279b906618c958c8d6502c8a5 319 SUPERFAMILY SSF46785 2 55 1.11E-8 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS02400 8e5a218279b906618c958c8d6502c8a5 319 Hamap MF_00978 Bifunctional ligase/repressor BirA [birA]. 1 314 32.541 T 22-04-2016 IPR030855 Bifunctional ligase/repressor BirA GO:0004077|GO:0006355 KEGG: 00780+6.3.4.15 PP4_RS02400 8e5a218279b906618c958c8d6502c8a5 319 Gene3D G3DSA:2.30.30.100 268 317 1.9E-16 T 22-04-2016 PP4_RS02400 8e5a218279b906618c958c8d6502c8a5 319 Gene3D G3DSA:1.10.10.10 1 58 4.1E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS02400 8e5a218279b906618c958c8d6502c8a5 319 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 79 313 4.0E-58 T 22-04-2016 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 PP4_RS02400 8e5a218279b906618c958c8d6502c8a5 319 SUPERFAMILY SSF55681 73 266 1.85E-57 T 22-04-2016 PP4_RS02400 8e5a218279b906618c958c8d6502c8a5 319 Gene3D G3DSA:3.30.930.10 73 265 1.4E-60 T 22-04-2016 PP4_RS01885 fc833c2ffc4eedfdb15aa156da94d2c2 349 TIGRFAM TIGR02195 heptsyl_trn_II: lipopolysaccharide heptosyltransferase II 2 337 2.4E-166 T 22-04-2016 IPR011910 Lipopolysaccharide heptosyltransferase II GO:0009103|GO:0016757 KEGG: 00231+2.-.-.-|UniPathway: UPA00958 PP4_RS01885 fc833c2ffc4eedfdb15aa156da94d2c2 349 PANTHER PTHR30160 1 347 1.8E-103 T 22-04-2016 PP4_RS01885 fc833c2ffc4eedfdb15aa156da94d2c2 349 Gene3D G3DSA:3.40.50.2000 1 148 5.5E-54 T 22-04-2016 PP4_RS01885 fc833c2ffc4eedfdb15aa156da94d2c2 349 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 69 318 2.0E-85 T 22-04-2016 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 PP4_RS01885 fc833c2ffc4eedfdb15aa156da94d2c2 349 SUPERFAMILY SSF53756 1 336 2.8E-102 T 22-04-2016 PP4_RS01885 fc833c2ffc4eedfdb15aa156da94d2c2 349 PANTHER PTHR30160:SF7 1 347 1.8E-103 T 22-04-2016 PP4_RS01885 fc833c2ffc4eedfdb15aa156da94d2c2 349 Gene3D G3DSA:3.40.50.2000 161 336 1.4E-57 T 22-04-2016 PP4_RS18415 b5b42386742198721d18e87f7dd33ccd 276 Gene3D G3DSA:3.40.190.10 49 129 3.5E-9 T 22-04-2016 PP4_RS18415 b5b42386742198721d18e87f7dd33ccd 276 Gene3D G3DSA:3.40.190.10 130 215 4.7E-8 T 22-04-2016 PP4_RS18415 b5b42386742198721d18e87f7dd33ccd 276 PANTHER PTHR30537:SF26 1 264 3.6E-30 T 22-04-2016 PP4_RS18415 b5b42386742198721d18e87f7dd33ccd 276 SUPERFAMILY SSF53850 49 252 6.52E-15 T 22-04-2016 PP4_RS18415 b5b42386742198721d18e87f7dd33ccd 276 Pfam PF03466 LysR substrate binding domain 46 244 4.9E-14 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS18415 b5b42386742198721d18e87f7dd33ccd 276 PANTHER PTHR30537 1 264 3.6E-30 T 22-04-2016 PP4_RS18415 b5b42386742198721d18e87f7dd33ccd 276 Gene3D G3DSA:1.10.10.10 2 38 6.2E-5 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS09395 1bcf8f5ce8b6130c2ddb0e85899f3213 481 SMART SM00382 25 186 2.3E-5 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS09395 1bcf8f5ce8b6130c2ddb0e85899f3213 481 SMART SM00382 260 469 2.1 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS09395 1bcf8f5ce8b6130c2ddb0e85899f3213 481 SUPERFAMILY SSF52540 5 230 1.78E-30 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS09395 1bcf8f5ce8b6130c2ddb0e85899f3213 481 PIRSF PIRSF039117 1 480 8.5E-114 T 22-04-2016 IPR030665 Circadian clock protein kinase KaiC KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 PP4_RS09395 1bcf8f5ce8b6130c2ddb0e85899f3213 481 Pfam PF06745 KaiC 10 225 3.7E-24 T 22-04-2016 IPR014774 KaiC-like domain PP4_RS09395 1bcf8f5ce8b6130c2ddb0e85899f3213 481 Pfam PF06745 KaiC 244 460 1.7E-30 T 22-04-2016 IPR014774 KaiC-like domain PP4_RS09395 1bcf8f5ce8b6130c2ddb0e85899f3213 481 Gene3D G3DSA:3.40.50.300 5 227 2.1E-49 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS09395 1bcf8f5ce8b6130c2ddb0e85899f3213 481 Gene3D G3DSA:3.40.50.300 238 476 2.7E-59 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS09395 1bcf8f5ce8b6130c2ddb0e85899f3213 481 PANTHER PTHR22942:SF38 162 462 1.9E-29 T 22-04-2016 PP4_RS09395 1bcf8f5ce8b6130c2ddb0e85899f3213 481 SUPERFAMILY SSF52540 241 474 8.33E-33 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS09395 1bcf8f5ce8b6130c2ddb0e85899f3213 481 PANTHER PTHR22942 162 462 1.9E-29 T 22-04-2016 PP4_RS01955 475d1b4741d00268b743010879f76631 645 SUPERFAMILY SSF51206 23 161 3.67E-17 T 22-04-2016 IPR018490 Cyclic nucleotide-binding-like PP4_RS01955 475d1b4741d00268b743010879f76631 645 Pfam PF00571 CBS domain 248 296 3.6E-6 T 22-04-2016 IPR000644 CBS domain PP4_RS01955 475d1b4741d00268b743010879f76631 645 Pfam PF00571 CBS domain 180 233 9.8E-9 T 22-04-2016 IPR000644 CBS domain PP4_RS01955 475d1b4741d00268b743010879f76631 645 Pfam PF03445 Putative nucleotidyltransferase DUF294 323 461 8.7E-44 T 22-04-2016 IPR005105 Protein-PII uridylyltransferase, N-terminal GO:0008773 PP4_RS01955 475d1b4741d00268b743010879f76631 645 Gene3D G3DSA:3.10.580.10 177 294 5.3E-29 T 22-04-2016 PP4_RS01955 475d1b4741d00268b743010879f76631 645 Gene3D G3DSA:2.60.120.10 22 163 4.0E-13 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS01955 475d1b4741d00268b743010879f76631 645 PANTHER PTHR11911 174 294 2.1E-21 T 22-04-2016 PP4_RS01955 475d1b4741d00268b743010879f76631 645 Pfam PF00027 Cyclic nucleotide-binding domain 50 137 4.6E-7 T 22-04-2016 IPR000595 Cyclic nucleotide-binding domain PP4_RS01955 475d1b4741d00268b743010879f76631 645 Pfam PF10335 Putative nucleotidyltransferase substrate binding domain 499 643 7.6E-44 T 22-04-2016 IPR018821 Domain of unknown function DUF294, putative nucleotidyltransferase substrate-binding PP4_RS01955 475d1b4741d00268b743010879f76631 645 SUPERFAMILY SSF54631 179 295 3.54E-26 T 22-04-2016 PP4_RS01955 475d1b4741d00268b743010879f76631 645 SMART SM00116 186 234 6.0E-7 T 22-04-2016 IPR000644 CBS domain PP4_RS01955 475d1b4741d00268b743010879f76631 645 SMART SM00116 251 298 1.2 T 22-04-2016 IPR000644 CBS domain PP4_RS10475 7ecb0f2ebc4610fb164aff856166be80 693 Pfam PF05378 Hydantoinase/oxoprolinase N-terminal region 9 184 3.6E-43 T 22-04-2016 IPR008040 Hydantoinaseoxoprolinase, N-terminal PP4_RS10475 7ecb0f2ebc4610fb164aff856166be80 693 PANTHER PTHR11365 2 693 5.0E-185 T 22-04-2016 PP4_RS10475 7ecb0f2ebc4610fb164aff856166be80 693 Pfam PF01968 Hydantoinase/oxoprolinase 206 497 7.9E-81 T 22-04-2016 IPR002821 Hydantoinase/oxoprolinase GO:0016787 PP4_RS10475 7ecb0f2ebc4610fb164aff856166be80 693 SUPERFAMILY SSF53067 9 82 1.51E-5 T 22-04-2016 PP4_RS10475 7ecb0f2ebc4610fb164aff856166be80 693 SUPERFAMILY SSF53067 269 348 1.51E-5 T 22-04-2016 PP4_RS02455 0a0be522188a99a5adac3d6404747856 231 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 22-04-2016 IPR023673 Ribosomal protein L1, conserved site PP4_RS02455 0a0be522188a99a5adac3d6404747856 231 SUPERFAMILY SSF56808 6 225 9.55E-78 T 22-04-2016 IPR023674 Ribosomal protein L1-like PP4_RS02455 0a0be522188a99a5adac3d6404747856 231 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 228 2.8E-99 T 22-04-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 PP4_RS02455 0a0be522188a99a5adac3d6404747856 231 Gene3D G3DSA:3.40.50.790 69 159 1.2E-37 T 22-04-2016 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich PP4_RS02455 0a0be522188a99a5adac3d6404747856 231 Pfam PF00687 Ribosomal protein L1p/L10e family 35 220 3.2E-48 T 22-04-2016 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein PP4_RS02455 0a0be522188a99a5adac3d6404747856 231 PANTHER PTHR23105:SF5 21 229 7.2E-73 T 22-04-2016 PP4_RS02455 0a0be522188a99a5adac3d6404747856 231 Gene3D G3DSA:3.30.190.20 18 68 1.1E-41 T 22-04-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 PP4_RS02455 0a0be522188a99a5adac3d6404747856 231 Gene3D G3DSA:3.30.190.20 161 226 1.1E-41 T 22-04-2016 IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich GO:0003723 PP4_RS02455 0a0be522188a99a5adac3d6404747856 231 PANTHER PTHR23105 21 229 7.2E-73 T 22-04-2016 PP4_RS02455 0a0be522188a99a5adac3d6404747856 231 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 41.494 T 22-04-2016 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 PP4_RS02455 0a0be522188a99a5adac3d6404747856 231 PIRSF PIRSF002155 1 227 1.1E-72 T 22-04-2016 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 PP4_RS05015 db5c538003c5d8e8bb8e555b097634ed 246 PANTHER PTHR30456 5 246 7.3E-134 T 22-04-2016 PP4_RS05015 db5c538003c5d8e8bb8e555b097634ed 246 SUPERFAMILY SSF63892 6 242 9.29E-95 T 22-04-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 PP4_RS05015 db5c538003c5d8e8bb8e555b097634ed 246 TIGRFAM TIGR00559 pdxJ: pyridoxine 5'-phosphate synthase 9 241 2.9E-95 T 22-04-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 PP4_RS05015 db5c538003c5d8e8bb8e555b097634ed 246 Gene3D G3DSA:3.20.20.70 6 243 9.8E-105 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS05015 db5c538003c5d8e8bb8e555b097634ed 246 Pfam PF03740 Pyridoxal phosphate biosynthesis protein PdxJ 9 241 1.6E-98 T 22-04-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 PP4_RS05015 db5c538003c5d8e8bb8e555b097634ed 246 Hamap MF_00279 Pyridoxine 5'-phosphate synthase [pdxJ]. 1 246 122.07 T 22-04-2016 IPR004569 Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ GO:0005737|GO:0008615|GO:0033856 KEGG: 00750+2.6.99.2|UniPathway: UPA00244 PP4_RS05015 db5c538003c5d8e8bb8e555b097634ed 246 PANTHER PTHR30456:SF0 5 246 7.3E-134 T 22-04-2016 PP4_RS01335 55a766ea5fb1d178fa93084eaabb2903 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 21 34 2.3E-7 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS01335 55a766ea5fb1d178fa93084eaabb2903 210 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 42 65 2.3E-7 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS01335 55a766ea5fb1d178fa93084eaabb2903 210 PANTHER PTHR30055:SF92 4 209 2.3E-37 T 22-04-2016 PP4_RS01335 55a766ea5fb1d178fa93084eaabb2903 210 PANTHER PTHR30055 4 209 2.3E-37 T 22-04-2016 PP4_RS01335 55a766ea5fb1d178fa93084eaabb2903 210 Pfam PF00440 Bacterial regulatory proteins, tetR family 21 67 6.8E-11 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS01335 55a766ea5fb1d178fa93084eaabb2903 210 SUPERFAMILY SSF46689 11 82 1.03E-14 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS01335 55a766ea5fb1d178fa93084eaabb2903 210 Gene3D G3DSA:1.10.357.10 8 170 1.0E-21 T 22-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PP4_RS11730 67c939f715a22ec01273a2aeb4e63919 335 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 285 327 - T 22-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PP4_RS11730 67c939f715a22ec01273a2aeb4e63919 335 PANTHER PTHR11019 34 53 4.4E-47 T 22-04-2016 PP4_RS11730 67c939f715a22ec01273a2aeb4e63919 335 PANTHER PTHR11019 70 331 4.4E-47 T 22-04-2016 PP4_RS11730 67c939f715a22ec01273a2aeb4e63919 335 SUPERFAMILY SSF52317 29 213 7.01E-29 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS11730 67c939f715a22ec01273a2aeb4e63919 335 PANTHER PTHR11019:SF90 34 53 4.4E-47 T 22-04-2016 PP4_RS11730 67c939f715a22ec01273a2aeb4e63919 335 PANTHER PTHR11019:SF90 70 331 4.4E-47 T 22-04-2016 PP4_RS11730 67c939f715a22ec01273a2aeb4e63919 335 Pfam PF12833 Helix-turn-helix domain 254 329 2.3E-21 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS11730 67c939f715a22ec01273a2aeb4e63919 335 SMART SM00342 248 331 6.4E-24 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS11730 67c939f715a22ec01273a2aeb4e63919 335 Pfam PF01965 DJ-1/PfpI family 45 196 6.5E-7 T 22-04-2016 IPR002818 DJ-1/PfpI PP4_RS11730 67c939f715a22ec01273a2aeb4e63919 335 SUPERFAMILY SSF46689 233 282 3.49E-8 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS11730 67c939f715a22ec01273a2aeb4e63919 335 Gene3D G3DSA:1.10.10.60 285 329 9.2E-13 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS11730 67c939f715a22ec01273a2aeb4e63919 335 SUPERFAMILY SSF46689 284 331 4.21E-10 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS11730 67c939f715a22ec01273a2aeb4e63919 335 Gene3D G3DSA:1.10.10.60 233 284 1.2E-14 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS11730 67c939f715a22ec01273a2aeb4e63919 335 Gene3D G3DSA:3.40.50.880 31 214 1.0E-24 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS03615 390ce9cd7dc57604ccef36094648a7df 478 Pfam PF01654 Cytochrome bd terminal oxidase subunit I 9 437 5.6E-169 T 22-04-2016 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 PP4_RS03615 390ce9cd7dc57604ccef36094648a7df 478 PANTHER PTHR30365 1 456 7.0E-284 T 22-04-2016 PP4_RS03615 390ce9cd7dc57604ccef36094648a7df 478 PANTHER PTHR30365:SF8 1 456 7.0E-284 T 22-04-2016 PP4_RS03615 390ce9cd7dc57604ccef36094648a7df 478 PIRSF PIRSF006446 2 462 1.7E-232 T 22-04-2016 IPR002585 Cytochrome ubiquinol oxidase subunit 1 GO:0016020 PP4_RS02930 6d79d9bab7a0902b9eb7bd4ebe7d8dde 230 SUPERFAMILY SSF52172 4 187 1.85E-37 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS02930 6d79d9bab7a0902b9eb7bd4ebe7d8dde 230 PANTHER PTHR26402 3 226 2.4E-107 T 22-04-2016 PP4_RS02930 6d79d9bab7a0902b9eb7bd4ebe7d8dde 230 SMART SM00862 148 224 1.7E-14 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS02930 6d79d9bab7a0902b9eb7bd4ebe7d8dde 230 Gene3D G3DSA:3.40.50.2300 4 120 1.1E-35 T 22-04-2016 PP4_RS02930 6d79d9bab7a0902b9eb7bd4ebe7d8dde 230 SMART SM00448 3 113 4.5E-35 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS02930 6d79d9bab7a0902b9eb7bd4ebe7d8dde 230 Gene3D G3DSA:1.10.10.10 131 226 7.9E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS02930 6d79d9bab7a0902b9eb7bd4ebe7d8dde 230 Pfam PF00072 Response regulator receiver domain 6 113 2.6E-24 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS02930 6d79d9bab7a0902b9eb7bd4ebe7d8dde 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 224 2.6E-17 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS02930 6d79d9bab7a0902b9eb7bd4ebe7d8dde 230 PANTHER PTHR26402:SF545 3 226 2.4E-107 T 22-04-2016 PP4_RS17910 c101af71f3de5e6cd853e13ae766aaaf 444 SUPERFAMILY SSF103473 17 418 3.53E-70 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS17910 c101af71f3de5e6cd853e13ae766aaaf 444 Gene3D G3DSA:1.20.1250.20 224 423 3.7E-19 T 22-04-2016 PP4_RS17910 c101af71f3de5e6cd853e13ae766aaaf 444 PANTHER PTHR23505 21 415 2.6E-48 T 22-04-2016 PP4_RS17910 c101af71f3de5e6cd853e13ae766aaaf 444 Pfam PF07690 Major Facilitator Superfamily 34 377 8.1E-45 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS17910 c101af71f3de5e6cd853e13ae766aaaf 444 Gene3D G3DSA:1.20.1250.20 20 205 3.5E-35 T 22-04-2016 PP4_RS04940 2922a0ebf8e2f0f2a370655fe7927798 459 Gene3D G3DSA:1.10.287.130 236 305 3.8E-12 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS04940 2922a0ebf8e2f0f2a370655fe7927798 459 Pfam PF00672 HAMP domain 177 239 1.3E-9 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS04940 2922a0ebf8e2f0f2a370655fe7927798 459 SMART SM00387 357 459 5.7E-27 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS04940 2922a0ebf8e2f0f2a370655fe7927798 459 SMART SM00388 244 309 5.8E-15 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS04940 2922a0ebf8e2f0f2a370655fe7927798 459 Pfam PF08521 Two-component sensor kinase N-terminal 19 166 5.1E-41 T 22-04-2016 IPR013727 Two-component sensor kinase, N-terminal PP4_RS04940 2922a0ebf8e2f0f2a370655fe7927798 459 Gene3D G3DSA:3.30.565.10 319 456 1.6E-32 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS04940 2922a0ebf8e2f0f2a370655fe7927798 459 SUPERFAMILY SSF47384 227 309 1.37E-17 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS04940 2922a0ebf8e2f0f2a370655fe7927798 459 Pfam PF00512 His Kinase A (phospho-acceptor) domain 245 309 3.3E-14 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS04940 2922a0ebf8e2f0f2a370655fe7927798 459 PANTHER PTHR24423:SF474 185 456 2.7E-67 T 22-04-2016 PP4_RS04940 2922a0ebf8e2f0f2a370655fe7927798 459 PANTHER PTHR24423:SF474 1 8 2.7E-67 T 22-04-2016 PP4_RS04940 2922a0ebf8e2f0f2a370655fe7927798 459 SMART SM00304 191 243 0.0017 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS04940 2922a0ebf8e2f0f2a370655fe7927798 459 PANTHER PTHR24423 185 456 2.7E-67 T 22-04-2016 PP4_RS04940 2922a0ebf8e2f0f2a370655fe7927798 459 PANTHER PTHR24423 1 8 2.7E-67 T 22-04-2016 PP4_RS04940 2922a0ebf8e2f0f2a370655fe7927798 459 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 359 455 7.2E-17 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS04940 2922a0ebf8e2f0f2a370655fe7927798 459 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 419 1.6E-8 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS04940 2922a0ebf8e2f0f2a370655fe7927798 459 PRINTS PR00344 Bacterial sensor protein C-terminal signature 391 405 1.6E-8 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS04940 2922a0ebf8e2f0f2a370655fe7927798 459 PRINTS PR00344 Bacterial sensor protein C-terminal signature 420 438 1.6E-8 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS04940 2922a0ebf8e2f0f2a370655fe7927798 459 SUPERFAMILY SSF55874 298 456 5.5E-31 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS15945 17fbd6c2ef5ef67887b83ff5bd24b0e7 329 TIGRFAM TIGR03866 PQQ_ABC_repeats: PQQ-dependent catabolism-associated beta-propeller protein 21 329 1.5E-164 T 22-04-2016 IPR022456 PQQ-dependent catabolism-associated beta-propeller protein PP4_RS15945 17fbd6c2ef5ef67887b83ff5bd24b0e7 329 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 111 152 1.6E-10 T 22-04-2016 IPR011964 YVTN beta-propeller repeat PP4_RS15945 17fbd6c2ef5ef67887b83ff5bd24b0e7 329 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 33 67 7.2E-8 T 22-04-2016 IPR011964 YVTN beta-propeller repeat PP4_RS15945 17fbd6c2ef5ef67887b83ff5bd24b0e7 329 TIGRFAM TIGR02276 beta_rpt_yvtn: 40-residue YVTN family beta-propeller repeat 287 328 1.1E-13 T 22-04-2016 IPR011964 YVTN beta-propeller repeat PP4_RS15945 17fbd6c2ef5ef67887b83ff5bd24b0e7 329 Pfam PF02239 Cytochrome D1 heme domain 73 173 6.8E-8 T 22-04-2016 PP4_RS15945 17fbd6c2ef5ef67887b83ff5bd24b0e7 329 SUPERFAMILY SSF50974 4 329 6.15E-83 T 22-04-2016 IPR011045 Nitrous oxide reductase, N-terminal PP4_RS15945 17fbd6c2ef5ef67887b83ff5bd24b0e7 329 Gene3D G3DSA:2.130.10.10 28 329 7.1E-79 T 22-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 PP4_RS15945 17fbd6c2ef5ef67887b83ff5bd24b0e7 329 PANTHER PTHR13833 32 192 3.8E-26 T 22-04-2016 PP4_RS15945 17fbd6c2ef5ef67887b83ff5bd24b0e7 329 PANTHER PTHR13833 285 327 3.8E-26 T 22-04-2016 PP4_RS18980 704c8b1f270a3ea7da2c45366c46f363 311 PANTHER PTHR30273:SF3 1 310 1.5E-90 T 22-04-2016 PP4_RS18980 704c8b1f270a3ea7da2c45366c46f363 311 PIRSF PIRSF018266 1 311 3.3E-79 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS18980 704c8b1f270a3ea7da2c45366c46f363 311 Pfam PF16220 Domain of unknown function (DUF4880) 7 49 2.6E-11 T 22-04-2016 IPR032623 FecR, N-terminal PP4_RS18980 704c8b1f270a3ea7da2c45366c46f363 311 Pfam PF04773 FecR protein 106 197 8.1E-16 T 22-04-2016 IPR006860 FecR protein PP4_RS18980 704c8b1f270a3ea7da2c45366c46f363 311 PANTHER PTHR30273 1 310 1.5E-90 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS26690 d1d7a8cc5b5a0418c6d901549d70a986 136 PANTHER PTHR30437:SF5 6 134 3.4E-56 T 22-04-2016 PP4_RS26690 d1d7a8cc5b5a0418c6d901549d70a986 136 SUPERFAMILY SSF54534 50 127 6.8E-16 T 22-04-2016 PP4_RS26690 d1d7a8cc5b5a0418c6d901549d70a986 136 Pfam PF14760 Rnk N-terminus 5 44 8.6E-11 T 22-04-2016 IPR029462 Regulator of nucleoside diphosphate kinase, N-terminal domain PP4_RS26690 d1d7a8cc5b5a0418c6d901549d70a986 136 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 51 126 3.3E-17 T 22-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 PP4_RS26690 d1d7a8cc5b5a0418c6d901549d70a986 136 Gene3D G3DSA:1.10.286.20 1 44 2.9E-17 T 22-04-2016 PP4_RS26690 d1d7a8cc5b5a0418c6d901549d70a986 136 PANTHER PTHR30437 6 134 3.4E-56 T 22-04-2016 PP4_RS26690 d1d7a8cc5b5a0418c6d901549d70a986 136 Gene3D G3DSA:3.10.50.30 48 135 6.6E-28 T 22-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 PP4_RS22245 54e348b475bc3017a557178d7bd2af8d 487 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 192 358 9.5E-25 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 PP4_RS22245 54e348b475bc3017a557178d7bd2af8d 487 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 158 2.2E-22 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 PP4_RS22245 54e348b475bc3017a557178d7bd2af8d 487 SUPERFAMILY SSF52540 1 167 3.38E-44 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS22245 54e348b475bc3017a557178d7bd2af8d 487 PANTHER PTHR11649 1 448 1.6E-148 T 22-04-2016 PP4_RS22245 54e348b475bc3017a557178d7bd2af8d 487 Pfam PF01926 50S ribosome-binding GTPase 5 119 2.9E-27 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 PP4_RS22245 54e348b475bc3017a557178d7bd2af8d 487 Pfam PF01926 50S ribosome-binding GTPase 194 312 6.4E-25 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 PP4_RS22245 54e348b475bc3017a557178d7bd2af8d 487 PIRSF PIRSF006485 1 456 2.5E-172 T 22-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 PP4_RS22245 54e348b475bc3017a557178d7bd2af8d 487 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 368 448 5.5E-27 T 22-04-2016 IPR032859 GTPase Der, C-terminal KH-domain-like PP4_RS22245 54e348b475bc3017a557178d7bd2af8d 487 SUPERFAMILY SSF52540 137 454 2.62E-64 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS22245 54e348b475bc3017a557178d7bd2af8d 487 Hamap MF_00195 GTPase Der [der]. 2 451 38.257 T 22-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 PP4_RS22245 54e348b475bc3017a557178d7bd2af8d 487 Gene3D G3DSA:3.40.50.300 189 374 2.1E-54 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS22245 54e348b475bc3017a557178d7bd2af8d 487 Gene3D G3DSA:3.40.50.300 3 167 2.2E-44 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS22245 54e348b475bc3017a557178d7bd2af8d 487 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 3 448 1.1E-174 T 22-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 PP4_RS22245 54e348b475bc3017a557178d7bd2af8d 487 PANTHER PTHR11649:SF5 1 448 1.6E-148 T 22-04-2016 IPR016484 GTP-binding protein EngA GO:0005525 PP4_RS22245 54e348b475bc3017a557178d7bd2af8d 487 Gene3D G3DSA:3.30.300.20 375 449 3.5E-23 T 22-04-2016 IPR015946 K homology domain-like, alpha/beta PP4_RS22245 54e348b475bc3017a557178d7bd2af8d 487 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 5.7E-9 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 PP4_RS22245 54e348b475bc3017a557178d7bd2af8d 487 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 72 90 5.7E-9 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 PP4_RS20550 e6c09c1e1b14dbca8207d8a2d4164d5d 1159 SUPERFAMILY SSF55785 627 749 2.05E-9 T 22-04-2016 IPR000014 PAS domain PP4_RS20550 e6c09c1e1b14dbca8207d8a2d4164d5d 1159 Pfam PF12860 PAS fold 642 756 9.5E-45 T 22-04-2016 PP4_RS20550 e6c09c1e1b14dbca8207d8a2d4164d5d 1159 SUPERFAMILY SSF55874 852 1016 9.04E-37 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS20550 e6c09c1e1b14dbca8207d8a2d4164d5d 1159 SMART SM00388 796 863 6.2E-14 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS20550 e6c09c1e1b14dbca8207d8a2d4164d5d 1159 Gene3D G3DSA:3.30.450.20 627 749 1.8E-13 T 22-04-2016 PP4_RS20550 e6c09c1e1b14dbca8207d8a2d4164d5d 1159 SUPERFAMILY SSF52172 1037 1156 2.28E-20 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS20550 e6c09c1e1b14dbca8207d8a2d4164d5d 1159 SUPERFAMILY SSF47384 779 864 9.61E-16 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS20550 e6c09c1e1b14dbca8207d8a2d4164d5d 1159 Pfam PF00512 His Kinase A (phospho-acceptor) domain 796 863 8.1E-13 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS20550 e6c09c1e1b14dbca8207d8a2d4164d5d 1159 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 910 1014 4.4E-16 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS20550 e6c09c1e1b14dbca8207d8a2d4164d5d 1159 PANTHER PTHR24423:SF439 634 768 5.0E-211 T 22-04-2016 PP4_RS20550 e6c09c1e1b14dbca8207d8a2d4164d5d 1159 PANTHER PTHR24423:SF439 794 1157 5.0E-211 T 22-04-2016 PP4_RS20550 e6c09c1e1b14dbca8207d8a2d4164d5d 1159 PANTHER PTHR24423:SF439 182 201 5.0E-211 T 22-04-2016 PP4_RS20550 e6c09c1e1b14dbca8207d8a2d4164d5d 1159 PANTHER PTHR24423:SF439 10 63 5.0E-211 T 22-04-2016 PP4_RS20550 e6c09c1e1b14dbca8207d8a2d4164d5d 1159 Gene3D G3DSA:1.10.287.130 789 859 9.1E-13 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS20550 e6c09c1e1b14dbca8207d8a2d4164d5d 1159 Pfam PF00072 Response regulator receiver domain 1040 1151 7.4E-10 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS20550 e6c09c1e1b14dbca8207d8a2d4164d5d 1159 Gene3D G3DSA:3.30.565.10 864 1020 2.5E-34 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS20550 e6c09c1e1b14dbca8207d8a2d4164d5d 1159 Gene3D G3DSA:3.40.50.2300 1032 1157 2.7E-19 T 22-04-2016 PP4_RS20550 e6c09c1e1b14dbca8207d8a2d4164d5d 1159 SMART SM00448 1038 1151 2.0E-10 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS20550 e6c09c1e1b14dbca8207d8a2d4164d5d 1159 SMART SM00387 907 1017 1.2E-23 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS20550 e6c09c1e1b14dbca8207d8a2d4164d5d 1159 PANTHER PTHR24423 634 768 5.0E-211 T 22-04-2016 PP4_RS20550 e6c09c1e1b14dbca8207d8a2d4164d5d 1159 PANTHER PTHR24423 794 1157 5.0E-211 T 22-04-2016 PP4_RS20550 e6c09c1e1b14dbca8207d8a2d4164d5d 1159 PANTHER PTHR24423 182 201 5.0E-211 T 22-04-2016 PP4_RS20550 e6c09c1e1b14dbca8207d8a2d4164d5d 1159 PANTHER PTHR24423 10 63 5.0E-211 T 22-04-2016 PP4_RS20550 e6c09c1e1b14dbca8207d8a2d4164d5d 1159 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1001 1014 4.0E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS20550 e6c09c1e1b14dbca8207d8a2d4164d5d 1159 PRINTS PR00344 Bacterial sensor protein C-terminal signature 942 956 4.0E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS20550 e6c09c1e1b14dbca8207d8a2d4164d5d 1159 PRINTS PR00344 Bacterial sensor protein C-terminal signature 960 970 4.0E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS20550 e6c09c1e1b14dbca8207d8a2d4164d5d 1159 PRINTS PR00344 Bacterial sensor protein C-terminal signature 977 995 4.0E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS24860 0dfc47d53aa59573e64d405cb0ffd290 238 Pfam PF00005 ABC transporter 21 165 3.1E-32 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS24860 0dfc47d53aa59573e64d405cb0ffd290 238 PIRSF PIRSF039137 1 238 7.7E-103 T 22-04-2016 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 PP4_RS24860 0dfc47d53aa59573e64d405cb0ffd290 238 SMART SM00382 30 203 1.0E-4 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS24860 0dfc47d53aa59573e64d405cb0ffd290 238 PANTHER PTHR24220:SF515 7 236 3.9E-149 T 22-04-2016 PP4_RS24860 0dfc47d53aa59573e64d405cb0ffd290 238 SUPERFAMILY SSF52540 4 235 3.52E-61 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS24860 0dfc47d53aa59573e64d405cb0ffd290 238 Gene3D G3DSA:3.40.50.300 2 233 3.0E-62 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS24860 0dfc47d53aa59573e64d405cb0ffd290 238 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS24860 0dfc47d53aa59573e64d405cb0ffd290 238 PANTHER PTHR24220 7 236 3.9E-149 T 22-04-2016 PP4_RS21960 a2481dfacdb6f60c3343d457fea74aa9 297 Pfam PF02535 ZIP Zinc transporter 153 292 3.6E-19 T 22-04-2016 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 PP4_RS21960 a2481dfacdb6f60c3343d457fea74aa9 297 PANTHER PTHR11040:SF33 2 9 1.8E-60 T 22-04-2016 PP4_RS21960 a2481dfacdb6f60c3343d457fea74aa9 297 PANTHER PTHR11040:SF33 37 296 1.8E-60 T 22-04-2016 PP4_RS21960 a2481dfacdb6f60c3343d457fea74aa9 297 PANTHER PTHR11040 2 9 1.8E-60 T 22-04-2016 PP4_RS21960 a2481dfacdb6f60c3343d457fea74aa9 297 PANTHER PTHR11040 37 296 1.8E-60 T 22-04-2016 PP4_RS06760 6c3b2364d3e7a0adadfc6e18c5eccb56 467 ProSitePatterns PS00218 Amino acid permeases signature. 39 69 - T 22-04-2016 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 PP4_RS06760 6c3b2364d3e7a0adadfc6e18c5eccb56 467 Pfam PF00324 Amino acid permease 14 455 4.1E-112 T 22-04-2016 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 PP4_RS06760 6c3b2364d3e7a0adadfc6e18c5eccb56 467 PIRSF PIRSF006060 1 464 2.1E-73 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS06760 6c3b2364d3e7a0adadfc6e18c5eccb56 467 PANTHER PTHR11785 1 457 1.4E-287 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS06760 6c3b2364d3e7a0adadfc6e18c5eccb56 467 PANTHER PTHR11785:SF26 1 457 1.4E-287 T 22-04-2016 PP4_RS14100 6ddbaffe8ffbdbb0ff7b536959d4b677 159 PANTHER PTHR10545 1 159 2.0E-61 T 22-04-2016 PP4_RS14100 6ddbaffe8ffbdbb0ff7b536959d4b677 159 Gene3D G3DSA:3.40.630.30 1 157 1.4E-60 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS14100 6ddbaffe8ffbdbb0ff7b536959d4b677 159 Pfam PF00583 Acetyltransferase (GNAT) family 57 137 3.3E-17 T 22-04-2016 IPR000182 GNAT domain GO:0008080 PP4_RS14100 6ddbaffe8ffbdbb0ff7b536959d4b677 159 SUPERFAMILY SSF55729 3 151 4.73E-39 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS23190 571777b10344b4eb5345aa4676015e13 417 Gene3D G3DSA:3.40.640.10 37 284 1.1E-107 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS23190 571777b10344b4eb5345aa4676015e13 417 PANTHER PTHR11680 8 416 0.0 T 22-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 PP4_RS23190 571777b10344b4eb5345aa4676015e13 417 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 221 237 - T 22-04-2016 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0004372|GO:0006544|GO:0006563|GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 PP4_RS23190 571777b10344b4eb5345aa4676015e13 417 Pfam PF00464 Serine hydroxymethyltransferase 9 385 2.7E-182 T 22-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 PP4_RS23190 571777b10344b4eb5345aa4676015e13 417 SUPERFAMILY SSF53383 6 416 6.39E-181 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS23190 571777b10344b4eb5345aa4676015e13 417 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 416 52.927 T 22-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 PP4_RS23190 571777b10344b4eb5345aa4676015e13 417 PIRSF PIRSF000412 2 417 1.4E-165 T 22-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 PP4_RS23190 571777b10344b4eb5345aa4676015e13 417 PANTHER PTHR11680:SF9 8 416 0.0 T 22-04-2016 PP4_RS23190 571777b10344b4eb5345aa4676015e13 417 Gene3D G3DSA:3.90.1150.10 285 416 1.3E-54 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS20255 b4fa66c4eedca6757da964e12342557d 595 Pfam PF00733 Asparagine synthase 250 590 2.0E-81 T 22-04-2016 IPR001962 Asparagine synthase GO:0004066|GO:0006529 PP4_RS20255 b4fa66c4eedca6757da964e12342557d 595 SUPERFAMILY SSF56235 1 230 1.37E-57 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PP4_RS20255 b4fa66c4eedca6757da964e12342557d 595 Gene3D G3DSA:3.60.20.10 25 230 1.8E-64 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PP4_RS20255 b4fa66c4eedca6757da964e12342557d 595 TIGRFAM TIGR03104 trio_amidotrans: asparagine synthase family amidotransferase 1 592 4.5E-288 T 22-04-2016 IPR017535 Asparagine synthase family amidotransferase PP4_RS20255 b4fa66c4eedca6757da964e12342557d 595 TIGRFAM TIGR01536 asn_synth_AEB: asparagine synthase (glutamine-hydrolyzing) 2 525 9.4E-122 T 22-04-2016 IPR006426 Asparagine synthase, glutamine-hydrolyzing GO:0004066|GO:0006529 KEGG: 00250+6.3.5.4|UniPathway: UPA00134 PP4_RS20255 b4fa66c4eedca6757da964e12342557d 595 PIRSF PIRSF001589 1 595 1.1E-200 T 22-04-2016 PP4_RS20255 b4fa66c4eedca6757da964e12342557d 595 Pfam PF13537 Glutamine amidotransferase domain 52 171 1.9E-41 T 22-04-2016 IPR017932 Glutamine amidotransferase type 2 domain PP4_RS20255 b4fa66c4eedca6757da964e12342557d 595 Gene3D G3DSA:3.40.50.620 442 590 9.1E-79 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS20255 b4fa66c4eedca6757da964e12342557d 595 Gene3D G3DSA:3.40.50.620 231 389 9.1E-79 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS20255 b4fa66c4eedca6757da964e12342557d 595 PANTHER PTHR11772 2 395 7.3E-192 T 22-04-2016 PP4_RS20255 b4fa66c4eedca6757da964e12342557d 595 PANTHER PTHR11772 438 565 7.3E-192 T 22-04-2016 PP4_RS20255 b4fa66c4eedca6757da964e12342557d 595 PANTHER PTHR11772:SF10 2 395 7.3E-192 T 22-04-2016 PP4_RS20255 b4fa66c4eedca6757da964e12342557d 595 PANTHER PTHR11772:SF10 438 565 7.3E-192 T 22-04-2016 PP4_RS20255 b4fa66c4eedca6757da964e12342557d 595 SUPERFAMILY SSF52402 447 570 2.29E-70 T 22-04-2016 PP4_RS20255 b4fa66c4eedca6757da964e12342557d 595 SUPERFAMILY SSF52402 240 393 2.29E-70 T 22-04-2016 PP4_RS03685 37bf24f108834907bbbba6657f87469b 266 SUPERFAMILY SSF51726 4 263 1.05E-60 T 22-04-2016 PP4_RS03685 37bf24f108834907bbbba6657f87469b 266 Gene3D G3DSA:3.20.20.210 16 46 1.1E-5 T 22-04-2016 PP4_RS03685 37bf24f108834907bbbba6657f87469b 266 Gene3D G3DSA:3.20.20.210 47 265 3.4E-63 T 22-04-2016 PP4_RS03685 37bf24f108834907bbbba6657f87469b 266 PANTHER PTHR30519 43 266 1.1E-64 T 22-04-2016 PP4_RS03685 37bf24f108834907bbbba6657f87469b 266 Pfam PF08267 Cobalamin-independent synthase, N-terminal domain 46 224 2.4E-43 T 22-04-2016 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal GO:0003871|GO:0008270|GO:0008652 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 PP4_RS03685 37bf24f108834907bbbba6657f87469b 266 PANTHER PTHR30519:SF0 43 266 1.1E-64 T 22-04-2016 PP4_RS15440 f3add79b3d55db71cde9b519d0ca7a03 278 PANTHER PTHR41251 2 260 1.1E-96 T 22-04-2016 PP4_RS15440 f3add79b3d55db71cde9b519d0ca7a03 278 Pfam PF02735 Ku70/Ku80 beta-barrel domain 12 189 2.5E-35 T 22-04-2016 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: REACT_216|Reactome: REACT_6185 PP4_RS15440 f3add79b3d55db71cde9b519d0ca7a03 278 PANTHER PTHR41251:SF1 2 260 1.1E-96 T 22-04-2016 PP4_RS15440 f3add79b3d55db71cde9b519d0ca7a03 278 Gene3D G3DSA:2.40.290.10 4 174 2.2E-9 T 22-04-2016 IPR016194 SPOC-like, C-terminal domain PP4_RS15440 f3add79b3d55db71cde9b519d0ca7a03 278 SUPERFAMILY SSF100939 2 263 1.0E-52 T 22-04-2016 IPR016194 SPOC-like, C-terminal domain PP4_RS15440 f3add79b3d55db71cde9b519d0ca7a03 278 Hamap MF_01875 Non-homologous end joining protein Ku [ku]. 2 261 31.519 T 22-04-2016 IPR009187 Non-homologous end joining protein Ku, prokaryotic type PP4_RS15440 f3add79b3d55db71cde9b519d0ca7a03 278 SMART SM00559 53 181 4.5E-41 T 22-04-2016 IPR006164 Ku70/Ku80 beta-barrel domain GO:0003677|GO:0006303 Reactome: REACT_216|Reactome: REACT_6185 PP4_RS15440 f3add79b3d55db71cde9b519d0ca7a03 278 PIRSF PIRSF006493 1 278 3.2E-95 T 22-04-2016 IPR009187 Non-homologous end joining protein Ku, prokaryotic type PP4_RS15440 f3add79b3d55db71cde9b519d0ca7a03 278 TIGRFAM TIGR02772 Ku_bact: Ku protein 2 262 2.7E-97 T 22-04-2016 IPR009187 Non-homologous end joining protein Ku, prokaryotic type PP4_RS17290 ee34de8bf1c9dbfdf7e17a7c473e2db9 550 SUPERFAMILY SSF55124 1 125 6.38E-28 T 22-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PP4_RS17290 ee34de8bf1c9dbfdf7e17a7c473e2db9 550 PANTHER PTHR11493 325 549 2.2E-166 T 22-04-2016 PP4_RS17290 ee34de8bf1c9dbfdf7e17a7c473e2db9 550 PANTHER PTHR11493 1 294 2.2E-166 T 22-04-2016 PP4_RS17290 ee34de8bf1c9dbfdf7e17a7c473e2db9 550 Gene3D G3DSA:3.30.413.10 406 546 5.6E-37 T 22-04-2016 PP4_RS17290 ee34de8bf1c9dbfdf7e17a7c473e2db9 550 PANTHER PTHR11493:SF47 325 549 2.2E-166 T 22-04-2016 PP4_RS17290 ee34de8bf1c9dbfdf7e17a7c473e2db9 550 PANTHER PTHR11493:SF47 1 294 2.2E-166 T 22-04-2016 PP4_RS17290 ee34de8bf1c9dbfdf7e17a7c473e2db9 550 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 328 396 1.9E-14 T 22-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PP4_RS17290 ee34de8bf1c9dbfdf7e17a7c473e2db9 550 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 53 109 3.7E-15 T 22-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PP4_RS17290 ee34de8bf1c9dbfdf7e17a7c473e2db9 550 SUPERFAMILY SSF56014 120 276 1.15E-46 T 22-04-2016 PP4_RS17290 ee34de8bf1c9dbfdf7e17a7c473e2db9 550 SUPERFAMILY SSF56014 407 546 2.88E-40 T 22-04-2016 PP4_RS17290 ee34de8bf1c9dbfdf7e17a7c473e2db9 550 Gene3D G3DSA:3.30.413.10 120 271 4.4E-42 T 22-04-2016 PP4_RS17290 ee34de8bf1c9dbfdf7e17a7c473e2db9 550 Gene3D G3DSA:3.90.480.10 51 117 1.0E-34 T 22-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PP4_RS17290 ee34de8bf1c9dbfdf7e17a7c473e2db9 550 Gene3D G3DSA:3.90.480.10 319 401 1.0E-34 T 22-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PP4_RS17290 ee34de8bf1c9dbfdf7e17a7c473e2db9 550 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 119 271 1.9E-43 T 22-04-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PP4_RS17290 ee34de8bf1c9dbfdf7e17a7c473e2db9 550 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 451 545 9.7E-12 T 22-04-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PP4_RS17290 ee34de8bf1c9dbfdf7e17a7c473e2db9 550 SUPERFAMILY SSF55124 313 419 7.03E-23 T 22-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PP4_RS17290 ee34de8bf1c9dbfdf7e17a7c473e2db9 550 SUPERFAMILY SSF55124 252 276 7.03E-23 T 22-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PP4_RS25035 35f6ba5c311e4a24f3a9f8025221f714 354 Hamap MF_00916 Epoxyqueuosine reductase [queG]. 8 317 48.251 T 22-04-2016 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700|UniPathway: UPA00392 PP4_RS25035 35f6ba5c311e4a24f3a9f8025221f714 354 SUPERFAMILY SSF46548 140 258 1.41E-18 T 22-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 PP4_RS25035 35f6ba5c311e4a24f3a9f8025221f714 354 Pfam PF08331 Domain of unknown function (DUF1730) 63 141 5.8E-22 T 22-04-2016 IPR013542 Domain of unknown function DUF1730 MetaCyc: PWY-6700|UniPathway: UPA00392 PP4_RS25035 35f6ba5c311e4a24f3a9f8025221f714 354 TIGRFAM TIGR00276 TIGR00276: epoxyqueuosine reductase 15 351 1.7E-149 T 22-04-2016 IPR004453 Epoxyqueuosine reductase QueG GO:0008033|GO:0008616|GO:0016491 MetaCyc: PWY-6700|UniPathway: UPA00392 PP4_RS25035 35f6ba5c311e4a24f3a9f8025221f714 354 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 195 206 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PP4_RS25035 35f6ba5c311e4a24f3a9f8025221f714 354 Gene3D G3DSA:3.30.70.20 192 264 4.5E-7 T 22-04-2016 PP4_RS25035 35f6ba5c311e4a24f3a9f8025221f714 354 PANTHER PTHR30002 3 354 8.6E-175 T 22-04-2016 PP4_RS25035 35f6ba5c311e4a24f3a9f8025221f714 354 PANTHER PTHR30002:SF4 3 354 8.6E-175 T 22-04-2016 PP4_RS25035 35f6ba5c311e4a24f3a9f8025221f714 354 Pfam PF13484 4Fe-4S double cluster binding domain 194 258 7.9E-20 T 22-04-2016 PP4_RS23120 e4f34981bc9e246149327b507bd361b4 205 PANTHER PTHR10516 86 204 6.1E-84 T 22-04-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type PP4_RS23120 e4f34981bc9e246149327b507bd361b4 205 PANTHER PTHR10516 6 67 6.1E-84 T 22-04-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type PP4_RS23120 e4f34981bc9e246149327b507bd361b4 205 Gene3D G3DSA:1.10.287.460 3 92 1.5E-22 T 22-04-2016 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 PP4_RS23120 e4f34981bc9e246149327b507bd361b4 205 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 4 108 4.4E-22 T 22-04-2016 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 PP4_RS23120 e4f34981bc9e246149327b507bd361b4 205 Gene3D G3DSA:3.10.50.40 93 204 6.4E-45 T 22-04-2016 PP4_RS23120 e4f34981bc9e246149327b507bd361b4 205 PANTHER PTHR10516:SF320 86 204 6.1E-84 T 22-04-2016 PP4_RS23120 e4f34981bc9e246149327b507bd361b4 205 PANTHER PTHR10516:SF320 6 67 6.1E-84 T 22-04-2016 PP4_RS23120 e4f34981bc9e246149327b507bd361b4 205 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 116 202 2.9E-27 T 22-04-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 PP4_RS23120 e4f34981bc9e246149327b507bd361b4 205 SUPERFAMILY SSF54534 7 204 9.82E-56 T 22-04-2016 PP4_RS03050 7f69ea93a5b639ed583cda41a0cf6e1b 842 Pfam PF01564 Spermine/spermidine synthase 530 674 7.9E-7 T 22-04-2016 PP4_RS03050 7f69ea93a5b639ed583cda41a0cf6e1b 842 SUPERFAMILY SSF53335 475 703 7.6E-37 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS03050 7f69ea93a5b639ed583cda41a0cf6e1b 842 PANTHER PTHR11558 530 773 1.3E-24 T 22-04-2016 PP4_RS03050 7f69ea93a5b639ed583cda41a0cf6e1b 842 SUPERFAMILY SSF103473 351 438 1.28E-11 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS03050 7f69ea93a5b639ed583cda41a0cf6e1b 842 SUPERFAMILY SSF103473 26 324 1.28E-11 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS03050 7f69ea93a5b639ed583cda41a0cf6e1b 842 Gene3D G3DSA:3.40.50.150 521 756 6.0E-35 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS03050 7f69ea93a5b639ed583cda41a0cf6e1b 842 PANTHER PTHR11558:SF4 530 773 1.3E-24 T 22-04-2016 PP4_RS19470 4b5b8a72c38b16d213bc3c766fb79b84 260 Gene3D G3DSA:3.20.20.140 1 256 2.3E-84 T 22-04-2016 PP4_RS19470 4b5b8a72c38b16d213bc3c766fb79b84 260 PANTHER PTHR10060:SF20 1 258 1.8E-127 T 22-04-2016 PP4_RS19470 4b5b8a72c38b16d213bc3c766fb79b84 260 Pfam PF01026 TatD related DNase 3 254 5.1E-78 T 22-04-2016 IPR001130 TatD family GO:0016788 PP4_RS19470 4b5b8a72c38b16d213bc3c766fb79b84 260 ProSitePatterns PS01091 TatD deoxyribonuclease family signature 3. 191 207 - T 22-04-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 PP4_RS19470 4b5b8a72c38b16d213bc3c766fb79b84 260 PIRSF PIRSF005902 1 258 4.1E-76 T 22-04-2016 IPR001130 TatD family GO:0016788 PP4_RS19470 4b5b8a72c38b16d213bc3c766fb79b84 260 SUPERFAMILY SSF51556 2 256 3.77E-85 T 22-04-2016 IPR032466 Metal-dependent hydrolase PP4_RS19470 4b5b8a72c38b16d213bc3c766fb79b84 260 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 2 10 - T 22-04-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 PP4_RS19470 4b5b8a72c38b16d213bc3c766fb79b84 260 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 2 254 1.7E-84 T 22-04-2016 IPR015991 Uncharacterised deoxyribonuclease TatD-type GO:0004536 PP4_RS19470 4b5b8a72c38b16d213bc3c766fb79b84 260 PANTHER PTHR10060 1 258 1.8E-127 T 22-04-2016 IPR001130 TatD family GO:0016788 PP4_RS09035 ad4027f06f7a8ea7f6d84806aff1f228 158 Gene3D G3DSA:1.10.10.10 15 150 3.8E-32 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS09035 ad4027f06f7a8ea7f6d84806aff1f228 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 130 150 1.1E-6 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS09035 ad4027f06f7a8ea7f6d84806aff1f228 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 64 80 1.1E-6 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS09035 ad4027f06f7a8ea7f6d84806aff1f228 158 PRINTS PR00598 Bacterial regulatory protein MarR family signature 100 116 1.1E-6 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS09035 ad4027f06f7a8ea7f6d84806aff1f228 158 PANTHER PTHR33164:SF8 16 152 5.6E-28 T 22-04-2016 PP4_RS09035 ad4027f06f7a8ea7f6d84806aff1f228 158 Pfam PF13463 Winged helix DNA-binding domain 47 113 5.8E-12 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS09035 ad4027f06f7a8ea7f6d84806aff1f228 158 PANTHER PTHR33164 16 152 5.6E-28 T 22-04-2016 PP4_RS09035 ad4027f06f7a8ea7f6d84806aff1f228 158 SUPERFAMILY SSF46785 15 153 7.14E-30 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS09035 ad4027f06f7a8ea7f6d84806aff1f228 158 SMART SM00347 41 140 4.4E-12 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS20270 601f827c9400d4a72a4e0aafb151e369 75 Pfam PF06794 Uncharacterised protein family (UPF0270) 1 67 1.0E-24 T 22-04-2016 IPR010648 Uncharacterised protein family UPF0270 PP4_RS20270 601f827c9400d4a72a4e0aafb151e369 75 ProDom PD026997 UPF0270 YHEU SO0879 3D-STRUCTURE LYASE PLU0398 YPO0179/Y3960/YP0178 ENOLASE HD0737 PSPTO1630 1 66 9.0E-30 T 22-04-2016 IPR010648 Uncharacterised protein family UPF0270 PP4_RS20270 601f827c9400d4a72a4e0aafb151e369 75 SUPERFAMILY SSF118001 1 73 1.96E-25 T 22-04-2016 IPR010648 Uncharacterised protein family UPF0270 PP4_RS20270 601f827c9400d4a72a4e0aafb151e369 75 Gene3D G3DSA:1.10.10.610 1 72 1.0E-27 T 22-04-2016 IPR010648 Uncharacterised protein family UPF0270 PP4_RS20270 601f827c9400d4a72a4e0aafb151e369 75 PIRSF PIRSF006169 1 75 7.3E-29 T 22-04-2016 IPR010648 Uncharacterised protein family UPF0270 PP4_RS20270 601f827c9400d4a72a4e0aafb151e369 75 Hamap MF_00690 UPF0270 protein YheU [yheU]. 1 69 23.161 T 22-04-2016 IPR010648 Uncharacterised protein family UPF0270 PP4_RS20775 2a7bf82599b3bd14f8a2870c4bdb509a 154 Pfam PF00578 AhpC/TSA family 27 133 2.9E-22 T 22-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 PP4_RS20775 2a7bf82599b3bd14f8a2870c4bdb509a 154 ProSitePatterns PS00194 Thioredoxin family active site. 44 62 - T 22-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 PP4_RS20775 2a7bf82599b3bd14f8a2870c4bdb509a 154 PANTHER PTHR10681:SF107 26 140 1.3E-27 T 22-04-2016 PP4_RS20775 2a7bf82599b3bd14f8a2870c4bdb509a 154 SUPERFAMILY SSF52833 1 151 9.19E-31 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS20775 2a7bf82599b3bd14f8a2870c4bdb509a 154 PANTHER PTHR10681 26 140 1.3E-27 T 22-04-2016 PP4_RS20775 2a7bf82599b3bd14f8a2870c4bdb509a 154 Gene3D G3DSA:3.40.30.10 4 151 4.8E-30 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS08900 48964fa627595b4c8f6dc4adca198af1 207 TIGRFAM TIGR00547 lolA: outer membrane lipoprotein carrier protein LolA 6 204 1.1E-28 T 22-04-2016 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 PP4_RS08900 48964fa627595b4c8f6dc4adca198af1 207 Gene3D G3DSA:2.50.20.10 26 206 1.3E-53 T 22-04-2016 PP4_RS08900 48964fa627595b4c8f6dc4adca198af1 207 Hamap MF_00240 Outer-membrane lipoprotein carrier protein [lolA]. 10 207 29.837 T 22-04-2016 IPR018323 Outer membrane lipoprotein carrier protein LolA, Proteobacteria GO:0042597|GO:0042953|GO:0042954 PP4_RS08900 48964fa627595b4c8f6dc4adca198af1 207 Pfam PF03548 Outer membrane lipoprotein carrier protein LolA 35 197 1.3E-53 T 22-04-2016 IPR004564 Outer membrane lipoprotein carrier protein LolA-like PP4_RS08900 48964fa627595b4c8f6dc4adca198af1 207 PANTHER PTHR35869 4 207 7.0E-47 T 22-04-2016 PP4_RS08900 48964fa627595b4c8f6dc4adca198af1 207 SUPERFAMILY SSF89392 26 206 3.73E-48 T 22-04-2016 IPR029046 Lipoprotein localisation LolA/LolB/LppX PP4_RS13865 65b8eec0d4dc3ecabe10874d7ecd9927 263 Pfam PF00196 Bacterial regulatory proteins, luxR family 193 246 2.3E-16 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS13865 65b8eec0d4dc3ecabe10874d7ecd9927 263 PANTHER PTHR26402 193 257 8.1E-30 T 22-04-2016 PP4_RS13865 65b8eec0d4dc3ecabe10874d7ecd9927 263 SMART SM00421 190 247 1.7E-19 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS13865 65b8eec0d4dc3ecabe10874d7ecd9927 263 Gene3D G3DSA:1.10.10.10 192 249 2.3E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS13865 65b8eec0d4dc3ecabe10874d7ecd9927 263 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 223 235 3.3E-11 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS13865 65b8eec0d4dc3ecabe10874d7ecd9927 263 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 207 223 3.3E-11 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS13865 65b8eec0d4dc3ecabe10874d7ecd9927 263 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 193 207 3.3E-11 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS13865 65b8eec0d4dc3ecabe10874d7ecd9927 263 PANTHER PTHR26402:SF572 193 257 8.1E-30 T 22-04-2016 PP4_RS13865 65b8eec0d4dc3ecabe10874d7ecd9927 263 SUPERFAMILY SSF46894 181 249 2.55E-17 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS25575 a5cd374e0b43795cc2869f44bbea0edb 262 TIGRFAM TIGR01837 PHA_granule_1: poly(hydroxyalkanoate) granule-associated protein 18 133 1.3E-42 T 22-04-2016 IPR008769 Poly granule associated PP4_RS25575 a5cd374e0b43795cc2869f44bbea0edb 262 PANTHER PTHR38664 10 154 1.1E-21 T 22-04-2016 PP4_RS25575 a5cd374e0b43795cc2869f44bbea0edb 262 PANTHER PTHR38664:SF1 10 154 1.1E-21 T 22-04-2016 PP4_RS25575 a5cd374e0b43795cc2869f44bbea0edb 262 Pfam PF05597 Poly(hydroxyalcanoate) granule associated protein (phasin) 9 132 2.4E-44 T 22-04-2016 IPR008769 Poly granule associated PP4_RS15560 cdccaf6f4f715bca24d29a18dc2e0f7f 305 Gene3D G3DSA:3.40.190.10 87 178 2.9E-8 T 22-04-2016 PP4_RS15560 cdccaf6f4f715bca24d29a18dc2e0f7f 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 4.8E-19 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS15560 cdccaf6f4f715bca24d29a18dc2e0f7f 305 SUPERFAMILY SSF46785 7 92 3.87E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS15560 cdccaf6f4f715bca24d29a18dc2e0f7f 305 Gene3D G3DSA:3.40.190.10 179 266 2.7E-15 T 22-04-2016 PP4_RS15560 cdccaf6f4f715bca24d29a18dc2e0f7f 305 Pfam PF03466 LysR substrate binding domain 92 297 1.1E-35 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS15560 cdccaf6f4f715bca24d29a18dc2e0f7f 305 SUPERFAMILY SSF53850 92 297 3.62E-37 T 22-04-2016 PP4_RS15560 cdccaf6f4f715bca24d29a18dc2e0f7f 305 PANTHER PTHR30537:SF1 1 296 3.4E-111 T 22-04-2016 PP4_RS15560 cdccaf6f4f715bca24d29a18dc2e0f7f 305 PANTHER PTHR30537 1 296 3.4E-111 T 22-04-2016 PP4_RS15560 cdccaf6f4f715bca24d29a18dc2e0f7f 305 Gene3D G3DSA:1.10.10.10 7 86 2.6E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS01250 65b24f0106373431297f384e6267df93 252 Gene3D G3DSA:3.40.50.300 1 242 2.3E-81 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS01250 65b24f0106373431297f384e6267df93 252 PIRSF PIRSF039085 1 247 7.2E-110 T 22-04-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 PP4_RS01250 65b24f0106373431297f384e6267df93 252 SUPERFAMILY SSF52540 1 241 2.78E-75 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS01250 65b24f0106373431297f384e6267df93 252 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS01250 65b24f0106373431297f384e6267df93 252 PANTHER PTHR24220 3 246 2.9E-134 T 22-04-2016 PP4_RS01250 65b24f0106373431297f384e6267df93 252 PANTHER PTHR24220:SF327 3 246 2.9E-134 T 22-04-2016 PP4_RS01250 65b24f0106373431297f384e6267df93 252 Pfam PF00005 ABC transporter 17 171 1.4E-32 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS01250 65b24f0106373431297f384e6267df93 252 SMART SM00382 26 219 6.1E-20 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS09030 757beb44262b9412c3bf74a8da6424b5 157 PANTHER PTHR11908 1 137 3.7E-42 T 22-04-2016 PP4_RS09030 757beb44262b9412c3bf74a8da6424b5 157 Gene3D G3DSA:3.10.20.30 2 76 8.5E-27 T 22-04-2016 IPR012675 Beta-grasp domain PP4_RS09030 757beb44262b9412c3bf74a8da6424b5 157 Pfam PF01799 [2Fe-2S] binding domain 75 147 4.7E-28 T 22-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 PP4_RS09030 757beb44262b9412c3bf74a8da6424b5 157 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 41 49 - T 22-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 PP4_RS09030 757beb44262b9412c3bf74a8da6424b5 157 Gene3D G3DSA:1.10.150.120 77 155 8.4E-33 T 22-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 PP4_RS09030 757beb44262b9412c3bf74a8da6424b5 157 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 8 54 1.8E-6 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS09030 757beb44262b9412c3bf74a8da6424b5 157 SUPERFAMILY SSF47741 86 154 3.27E-30 T 22-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 PP4_RS09030 757beb44262b9412c3bf74a8da6424b5 157 SUPERFAMILY SSF54292 3 80 1.31E-22 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS16630 56ee047eadf183d4c59583968ee57897 303 SUPERFAMILY SSF53850 89 295 2.71E-47 T 22-04-2016 PP4_RS16630 56ee047eadf183d4c59583968ee57897 303 Gene3D G3DSA:1.10.10.10 5 86 5.5E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16630 56ee047eadf183d4c59583968ee57897 303 PANTHER PTHR30537:SF5 1 303 8.1E-115 T 22-04-2016 PP4_RS16630 56ee047eadf183d4c59583968ee57897 303 Gene3D G3DSA:3.40.190.10 177 260 4.6E-24 T 22-04-2016 PP4_RS16630 56ee047eadf183d4c59583968ee57897 303 Gene3D G3DSA:3.40.190.10 92 176 1.5E-24 T 22-04-2016 PP4_RS16630 56ee047eadf183d4c59583968ee57897 303 Pfam PF03466 LysR substrate binding domain 88 291 2.4E-44 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS16630 56ee047eadf183d4c59583968ee57897 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 3.3E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16630 56ee047eadf183d4c59583968ee57897 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 3.3E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16630 56ee047eadf183d4c59583968ee57897 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 3.3E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16630 56ee047eadf183d4c59583968ee57897 303 SUPERFAMILY SSF46785 5 86 1.36E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16630 56ee047eadf183d4c59583968ee57897 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 1.5E-17 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16630 56ee047eadf183d4c59583968ee57897 303 PANTHER PTHR30537 1 303 8.1E-115 T 22-04-2016 PP4_RS20865 96caa6fafbef708caf030ba4261975e7 160 Gene3D G3DSA:3.90.950.20 3 157 1.7E-56 T 22-04-2016 IPR008136 CinA, C-terminal PP4_RS20865 96caa6fafbef708caf030ba4261975e7 160 Pfam PF02464 Competence-damaged protein 5 156 2.5E-56 T 22-04-2016 IPR008136 CinA, C-terminal PP4_RS20865 96caa6fafbef708caf030ba4261975e7 160 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 11 154 6.2E-44 T 22-04-2016 IPR008136 CinA, C-terminal PP4_RS20865 96caa6fafbef708caf030ba4261975e7 160 SUPERFAMILY SSF142433 4 157 3.66E-53 T 22-04-2016 IPR008136 CinA, C-terminal PP4_RS20865 96caa6fafbef708caf030ba4261975e7 160 PANTHER PTHR13939 2 157 3.6E-63 T 22-04-2016 PP4_RS08040 6b77c69fe7f269ed991c1e8ad16e95eb 158 PANTHER PTHR12418 1 152 1.9E-39 T 22-04-2016 PP4_RS08040 6b77c69fe7f269ed991c1e8ad16e95eb 158 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 20 116 4.6E-15 T 22-04-2016 IPR003736 Phenylacetic acid degradation-related domain PP4_RS08040 6b77c69fe7f269ed991c1e8ad16e95eb 158 PANTHER PTHR12418:SF28 1 152 1.9E-39 T 22-04-2016 PP4_RS08040 6b77c69fe7f269ed991c1e8ad16e95eb 158 Gene3D G3DSA:3.10.129.10 8 140 8.5E-31 T 22-04-2016 IPR029069 HotDog domain PP4_RS08040 6b77c69fe7f269ed991c1e8ad16e95eb 158 SUPERFAMILY SSF54637 1 139 3.74E-29 T 22-04-2016 IPR029069 HotDog domain PP4_RS08040 6b77c69fe7f269ed991c1e8ad16e95eb 158 Pfam PF03061 Thioesterase superfamily 52 127 2.8E-13 T 22-04-2016 IPR006683 Thioesterase domain PP4_RS21145 d46e0aeea73c10f530ec8b7cb32c1431 366 PANTHER PTHR32347:SF12 1 354 1.3E-88 T 22-04-2016 PP4_RS21145 d46e0aeea73c10f530ec8b7cb32c1431 366 Gene3D G3DSA:2.40.50.100 166 197 4.1E-19 T 22-04-2016 PP4_RS21145 d46e0aeea73c10f530ec8b7cb32c1431 366 Gene3D G3DSA:2.40.50.100 62 91 4.1E-19 T 22-04-2016 PP4_RS21145 d46e0aeea73c10f530ec8b7cb32c1431 366 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 46 352 2.4E-75 T 22-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 PP4_RS21145 d46e0aeea73c10f530ec8b7cb32c1431 366 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 62 260 1.5E-22 T 22-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PP4_RS21145 d46e0aeea73c10f530ec8b7cb32c1431 366 SUPERFAMILY SSF111369 48 273 1.31E-26 T 22-04-2016 PP4_RS21145 d46e0aeea73c10f530ec8b7cb32c1431 366 PANTHER PTHR32347 1 354 1.3E-88 T 22-04-2016 PP4_RS16200 1e6967e2c521dbaf482da87dea57c9b3 371 PRINTS PR00735 Glycosyl hydrolase family 8 signature 336 350 5.4E-14 T 22-04-2016 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 PP4_RS16200 1e6967e2c521dbaf482da87dea57c9b3 371 PRINTS PR00735 Glycosyl hydrolase family 8 signature 216 227 5.4E-14 T 22-04-2016 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 PP4_RS16200 1e6967e2c521dbaf482da87dea57c9b3 371 PRINTS PR00735 Glycosyl hydrolase family 8 signature 241 250 5.4E-14 T 22-04-2016 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 PP4_RS16200 1e6967e2c521dbaf482da87dea57c9b3 371 PRINTS PR00735 Glycosyl hydrolase family 8 signature 53 66 5.4E-14 T 22-04-2016 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 PP4_RS16200 1e6967e2c521dbaf482da87dea57c9b3 371 PRINTS PR00735 Glycosyl hydrolase family 8 signature 115 133 5.4E-14 T 22-04-2016 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 PP4_RS16200 1e6967e2c521dbaf482da87dea57c9b3 371 Pfam PF01270 Glycosyl hydrolases family 8 16 350 1.8E-77 T 22-04-2016 IPR002037 Glycoside hydrolase, family 8 GO:0004553|GO:0005975 KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 PP4_RS16200 1e6967e2c521dbaf482da87dea57c9b3 371 Gene3D G3DSA:1.50.10.10 19 356 3.1E-86 T 22-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 PP4_RS16200 1e6967e2c521dbaf482da87dea57c9b3 371 ProSitePatterns PS00812 Glycosyl hydrolases family 8 signature. 115 133 - T 22-04-2016 IPR019834 Glycoside hydrolase, family 8, conserved site KEGG: 00500+3.2.1.4|MetaCyc: PWY-6788 PP4_RS16200 1e6967e2c521dbaf482da87dea57c9b3 371 SUPERFAMILY SSF48208 9 355 8.93E-93 T 22-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 PP4_RS14080 c59ec6a331df5074e60e0b892a531b4f 308 Gene3D G3DSA:1.10.340.30 139 251 8.2E-23 T 22-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 PP4_RS14080 c59ec6a331df5074e60e0b892a531b4f 308 SMART SM00478 146 301 3.2E-5 T 22-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 PP4_RS14080 c59ec6a331df5074e60e0b892a531b4f 308 SUPERFAMILY SSF48150 125 299 1.38E-32 T 22-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 PP4_RS14080 c59ec6a331df5074e60e0b892a531b4f 308 SUPERFAMILY SSF55945 21 117 3.61E-25 T 22-04-2016 PP4_RS14080 c59ec6a331df5074e60e0b892a531b4f 308 Pfam PF06029 AlkA N-terminal domain 22 136 4.9E-32 T 22-04-2016 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal PP4_RS14080 c59ec6a331df5074e60e0b892a531b4f 308 Gene3D G3DSA:3.30.310.20 21 136 9.1E-32 T 22-04-2016 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal PP4_RS14080 c59ec6a331df5074e60e0b892a531b4f 308 SMART SM01009 21 136 3.7E-42 T 22-04-2016 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal PP4_RS14080 c59ec6a331df5074e60e0b892a531b4f 308 PANTHER PTHR10242 22 64 1.0E-77 T 22-04-2016 PP4_RS14080 c59ec6a331df5074e60e0b892a531b4f 308 PANTHER PTHR10242 83 301 1.0E-77 T 22-04-2016 PP4_RS14080 c59ec6a331df5074e60e0b892a531b4f 308 Gene3D G3DSA:1.10.1670.10 255 301 3.3E-14 T 22-04-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal PP4_RS14080 c59ec6a331df5074e60e0b892a531b4f 308 PANTHER PTHR10242:SF3 22 64 1.0E-77 T 22-04-2016 PP4_RS14080 c59ec6a331df5074e60e0b892a531b4f 308 PANTHER PTHR10242:SF3 83 301 1.0E-77 T 22-04-2016 PP4_RS03945 a6acdf58338b0b57d357bf2ea87aae75 291 Pfam PF12833 Helix-turn-helix domain 209 287 2.0E-22 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS03945 a6acdf58338b0b57d357bf2ea87aae75 291 SUPERFAMILY SSF46689 190 236 2.2E-11 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS03945 a6acdf58338b0b57d357bf2ea87aae75 291 SUPERFAMILY SSF46689 239 288 7.17E-13 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS03945 a6acdf58338b0b57d357bf2ea87aae75 291 SMART SM00342 203 286 1.8E-34 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS03945 a6acdf58338b0b57d357bf2ea87aae75 291 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 240 282 - T 22-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PP4_RS03945 a6acdf58338b0b57d357bf2ea87aae75 291 PANTHER PTHR11019 44 290 2.6E-52 T 22-04-2016 PP4_RS03945 a6acdf58338b0b57d357bf2ea87aae75 291 Gene3D G3DSA:1.10.10.60 187 241 6.0E-19 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS03945 a6acdf58338b0b57d357bf2ea87aae75 291 PANTHER PTHR11019:SF105 44 290 2.6E-52 T 22-04-2016 PP4_RS03945 a6acdf58338b0b57d357bf2ea87aae75 291 Gene3D G3DSA:1.10.10.60 242 288 5.9E-17 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS03945 a6acdf58338b0b57d357bf2ea87aae75 291 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 255 270 7.5E-7 T 22-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PP4_RS03945 a6acdf58338b0b57d357bf2ea87aae75 291 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 270 286 7.5E-7 T 22-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PP4_RS19380 9f5796fefbf1dbc045f29081afab1c23 179 PANTHER PTHR30328:SF22 7 179 1.4E-78 T 22-04-2016 PP4_RS19380 9f5796fefbf1dbc045f29081afab1c23 179 SUPERFAMILY SSF46689 2 72 1.23E-16 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS19380 9f5796fefbf1dbc045f29081afab1c23 179 Gene3D G3DSA:1.10.10.60 2 56 1.9E-16 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS19380 9f5796fefbf1dbc045f29081afab1c23 179 PANTHER PTHR30328 7 179 1.4E-78 T 22-04-2016 PP4_RS19380 9f5796fefbf1dbc045f29081afab1c23 179 SUPERFAMILY SSF48498 78 177 8.9E-23 T 22-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal PP4_RS19380 9f5796fefbf1dbc045f29081afab1c23 179 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 4.5E-6 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS19380 9f5796fefbf1dbc045f29081afab1c23 179 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 4.5E-6 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS19380 9f5796fefbf1dbc045f29081afab1c23 179 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 58 4.1E-11 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS19380 9f5796fefbf1dbc045f29081afab1c23 179 Gene3D G3DSA:1.10.357.10 57 178 7.5E-37 T 22-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PP4_RS19380 9f5796fefbf1dbc045f29081afab1c23 179 ProSitePatterns PS01081 TetR-type HTH domain signature. 24 55 - T 22-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site PP4_RS10515 3c4af0cac20137a64b83b2916029b0f6 382 SUPERFAMILY SSF53822 30 377 3.18E-88 T 22-04-2016 IPR028082 Periplasmic binding protein-like I PP4_RS10515 3c4af0cac20137a64b83b2916029b0f6 382 Gene3D G3DSA:3.40.50.2300 32 232 1.2E-60 T 22-04-2016 PP4_RS10515 3c4af0cac20137a64b83b2916029b0f6 382 PANTHER PTHR30483 12 374 3.2E-74 T 22-04-2016 PP4_RS10515 3c4af0cac20137a64b83b2916029b0f6 382 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 97 107 7.3E-7 T 22-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 PP4_RS10515 3c4af0cac20137a64b83b2916029b0f6 382 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 263 281 7.3E-7 T 22-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 PP4_RS10515 3c4af0cac20137a64b83b2916029b0f6 382 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 339 354 7.3E-7 T 22-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 PP4_RS10515 3c4af0cac20137a64b83b2916029b0f6 382 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 32 48 7.3E-7 T 22-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 PP4_RS10515 3c4af0cac20137a64b83b2916029b0f6 382 Pfam PF13458 Periplasmic binding protein 32 372 1.3E-60 T 22-04-2016 IPR028081 Leucine-binding protein domain PP4_RS10515 3c4af0cac20137a64b83b2916029b0f6 382 PANTHER PTHR30483:SF20 12 374 3.2E-74 T 22-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 PP4_RS19435 8d7d59f1caeb9606c58a5e9a6bcc39fd 398 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 245 258 - T 22-04-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 PP4_RS19435 8d7d59f1caeb9606c58a5e9a6bcc39fd 398 Gene3D G3DSA:3.40.640.10 48 317 1.3E-105 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS19435 8d7d59f1caeb9606c58a5e9a6bcc39fd 398 Pfam PF00155 Aminotransferase class I and II 28 394 2.4E-82 T 22-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PP4_RS19435 8d7d59f1caeb9606c58a5e9a6bcc39fd 398 PANTHER PTHR11879 1 397 3.1E-238 T 22-04-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 PP4_RS19435 8d7d59f1caeb9606c58a5e9a6bcc39fd 398 PANTHER PTHR11879:SF11 1 397 3.1E-238 T 22-04-2016 PP4_RS19435 8d7d59f1caeb9606c58a5e9a6bcc39fd 398 PRINTS PR00799 Aspartate aminotransferase signature 275 300 5.52E-37 T 22-04-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 PP4_RS19435 8d7d59f1caeb9606c58a5e9a6bcc39fd 398 PRINTS PR00799 Aspartate aminotransferase signature 208 220 5.52E-37 T 22-04-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 PP4_RS19435 8d7d59f1caeb9606c58a5e9a6bcc39fd 398 PRINTS PR00799 Aspartate aminotransferase signature 343 361 5.52E-37 T 22-04-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 PP4_RS19435 8d7d59f1caeb9606c58a5e9a6bcc39fd 398 PRINTS PR00799 Aspartate aminotransferase signature 177 196 5.52E-37 T 22-04-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 PP4_RS19435 8d7d59f1caeb9606c58a5e9a6bcc39fd 398 SUPERFAMILY SSF53383 1 398 7.12E-117 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS21540 e63eecd0607462e3c6d50014c0273398 252 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 8 247 17.396 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 PP4_RS21540 e63eecd0607462e3c6d50014c0273398 252 PANTHER PTHR30371:SF0 11 248 5.8E-95 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 PP4_RS21540 e63eecd0607462e3c6d50014c0273398 252 PANTHER PTHR30371 11 248 5.8E-95 T 22-04-2016 PP4_RS21540 e63eecd0607462e3c6d50014c0273398 252 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 13 230 2.9E-70 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 PP4_RS21540 e63eecd0607462e3c6d50014c0273398 252 ProSitePatterns PS01218 TatC family signature. 158 177 - T 22-04-2016 IPR019820 Sec-independent periplasmic protein translocase, conserved site PP4_RS21540 e63eecd0607462e3c6d50014c0273398 252 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 158 186 4.0E-45 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 PP4_RS21540 e63eecd0607462e3c6d50014c0273398 252 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 12 39 4.0E-45 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 PP4_RS21540 e63eecd0607462e3c6d50014c0273398 252 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 107 133 4.0E-45 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 PP4_RS21540 e63eecd0607462e3c6d50014c0273398 252 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 89 107 4.0E-45 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 PP4_RS21540 e63eecd0607462e3c6d50014c0273398 252 Pfam PF00902 Sec-independent protein translocase protein (TatC) 15 225 3.4E-62 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 PP4_RS08160 9f5520744d6dcb525d406e9248fbb72f 231 PANTHER PTHR26402:SF516 5 227 2.3E-141 T 22-04-2016 PP4_RS08160 9f5520744d6dcb525d406e9248fbb72f 231 SUPERFAMILY SSF52172 4 184 1.61E-38 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS08160 9f5520744d6dcb525d406e9248fbb72f 231 Pfam PF00486 Transcriptional regulatory protein, C terminal 152 226 2.9E-22 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS08160 9f5520744d6dcb525d406e9248fbb72f 231 Pfam PF00072 Response regulator receiver domain 8 115 2.5E-26 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS08160 9f5520744d6dcb525d406e9248fbb72f 231 SMART SM00448 5 115 4.7E-38 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS08160 9f5520744d6dcb525d406e9248fbb72f 231 SMART SM00862 150 226 7.4E-24 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS08160 9f5520744d6dcb525d406e9248fbb72f 231 Gene3D G3DSA:3.40.50.2300 3 122 3.1E-36 T 22-04-2016 PP4_RS08160 9f5520744d6dcb525d406e9248fbb72f 231 Gene3D G3DSA:1.10.10.10 132 229 9.9E-30 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS08160 9f5520744d6dcb525d406e9248fbb72f 231 PANTHER PTHR26402 5 227 2.3E-141 T 22-04-2016 PP4_RS05045 730214a93bcfd7e9e90ab507bf9e48c4 130 Pfam PF09394 Chagasin family peptidase inhibitor I42 38 126 4.4E-23 T 22-04-2016 IPR018990 Proteinase inhibitor I42, chagasin PP4_RS05045 730214a93bcfd7e9e90ab507bf9e48c4 130 PANTHER PTHR36530:SF2 5 130 2.6E-28 T 22-04-2016 PP4_RS05045 730214a93bcfd7e9e90ab507bf9e48c4 130 PANTHER PTHR36530 5 130 2.6E-28 T 22-04-2016 PP4_RS05045 730214a93bcfd7e9e90ab507bf9e48c4 130 SUPERFAMILY SSF141066 30 129 2.09E-31 T 22-04-2016 IPR018990 Proteinase inhibitor I42, chagasin PP4_RS25905 6f2fb43a255a6a0b0b7565fafa84b78a 472 Gene3D G3DSA:3.50.50.60 240 400 2.4E-49 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS25905 6f2fb43a255a6a0b0b7565fafa84b78a 472 PRINTS PR00419 Adrenodoxin reductase family signature 174 187 1.2E-34 T 22-04-2016 PP4_RS25905 6f2fb43a255a6a0b0b7565fafa84b78a 472 PRINTS PR00419 Adrenodoxin reductase family signature 151 173 1.2E-34 T 22-04-2016 PP4_RS25905 6f2fb43a255a6a0b0b7565fafa84b78a 472 PRINTS PR00419 Adrenodoxin reductase family signature 292 306 1.2E-34 T 22-04-2016 PP4_RS25905 6f2fb43a255a6a0b0b7565fafa84b78a 472 PRINTS PR00419 Adrenodoxin reductase family signature 216 226 1.2E-34 T 22-04-2016 PP4_RS25905 6f2fb43a255a6a0b0b7565fafa84b78a 472 PRINTS PR00419 Adrenodoxin reductase family signature 326 339 1.2E-34 T 22-04-2016 PP4_RS25905 6f2fb43a255a6a0b0b7565fafa84b78a 472 PANTHER PTHR11938 28 472 1.7E-286 T 22-04-2016 PP4_RS25905 6f2fb43a255a6a0b0b7565fafa84b78a 472 TIGRFAM TIGR01318 gltD_gamma_fam: glutamate synthase, small subunit 9 472 9.0E-240 T 22-04-2016 IPR006006 Glutamate synthase, NADH/NADPH, small subunit 2 GO:0006537|GO:0016639 PP4_RS25905 6f2fb43a255a6a0b0b7565fafa84b78a 472 SUPERFAMILY SSF51971 148 401 2.88E-70 T 22-04-2016 PP4_RS25905 6f2fb43a255a6a0b0b7565fafa84b78a 472 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 27 137 3.5E-38 T 22-04-2016 IPR028261 Dihydroprymidine dehydrogenase domain II PP4_RS25905 6f2fb43a255a6a0b0b7565fafa84b78a 472 Gene3D G3DSA:3.40.50.720 401 471 1.0E-35 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS25905 6f2fb43a255a6a0b0b7565fafa84b78a 472 Gene3D G3DSA:3.40.50.720 153 239 1.0E-35 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS25905 6f2fb43a255a6a0b0b7565fafa84b78a 472 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 150 459 8.9E-27 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS25905 6f2fb43a255a6a0b0b7565fafa84b78a 472 PANTHER PTHR11938:SF93 28 472 1.7E-286 T 22-04-2016 PP4_RS25905 6f2fb43a255a6a0b0b7565fafa84b78a 472 SUPERFAMILY SSF46548 11 160 1.99E-39 T 22-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 PP4_RS25905 6f2fb43a255a6a0b0b7565fafa84b78a 472 Gene3D G3DSA:1.10.1060.10 10 152 9.4E-45 T 22-04-2016 PP4_RS13755 04a7f925294f4ff85f51a382de0a5f3b 257 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 147 175 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PP4_RS13755 04a7f925294f4ff85f51a382de0a5f3b 257 SUPERFAMILY SSF51735 11 249 4.57E-84 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS13755 04a7f925294f4ff85f51a382de0a5f3b 257 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 12 207 1.1E-4 T 22-04-2016 PP4_RS13755 04a7f925294f4ff85f51a382de0a5f3b 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 1.4E-40 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13755 04a7f925294f4ff85f51a382de0a5f3b 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 1.4E-40 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13755 04a7f925294f4ff85f51a382de0a5f3b 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 87 98 1.4E-40 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13755 04a7f925294f4ff85f51a382de0a5f3b 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 1.4E-40 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13755 04a7f925294f4ff85f51a382de0a5f3b 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 1.4E-40 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13755 04a7f925294f4ff85f51a382de0a5f3b 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 13 30 1.4E-40 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13755 04a7f925294f4ff85f51a382de0a5f3b 257 PANTHER PTHR24322 160 191 9.7E-51 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13755 04a7f925294f4ff85f51a382de0a5f3b 257 PANTHER PTHR24322 16 144 9.7E-51 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13755 04a7f925294f4ff85f51a382de0a5f3b 257 Gene3D G3DSA:3.40.50.720 5 249 3.0E-87 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS13755 04a7f925294f4ff85f51a382de0a5f3b 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 87 98 4.8E-9 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13755 04a7f925294f4ff85f51a382de0a5f3b 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 4.8E-9 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13755 04a7f925294f4ff85f51a382de0a5f3b 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 4.8E-9 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13755 04a7f925294f4ff85f51a382de0a5f3b 257 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 20 250 5.5E-65 T 22-04-2016 PP4_RS16250 9d47e510bd7665104cefd3787d1db2a4 339 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS16250 9d47e510bd7665104cefd3787d1db2a4 339 Pfam PF08402 TOBE domain 260 332 1.8E-14 T 22-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 PP4_RS16250 9d47e510bd7665104cefd3787d1db2a4 339 Gene3D G3DSA:3.40.50.300 4 233 1.0E-80 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS16250 9d47e510bd7665104cefd3787d1db2a4 339 SUPERFAMILY SSF52540 4 240 9.18E-86 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS16250 9d47e510bd7665104cefd3787d1db2a4 339 SUPERFAMILY SSF50331 246 331 3.15E-10 T 22-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal PP4_RS16250 9d47e510bd7665104cefd3787d1db2a4 339 Pfam PF00005 ABC transporter 22 161 1.1E-34 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS16250 9d47e510bd7665104cefd3787d1db2a4 339 SMART SM00382 28 211 2.1E-19 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS16250 9d47e510bd7665104cefd3787d1db2a4 339 PANTHER PTHR24220 5 242 8.9E-123 T 22-04-2016 PP4_RS16250 9d47e510bd7665104cefd3787d1db2a4 339 PANTHER PTHR24220:SF150 5 242 8.9E-123 T 22-04-2016 PP4_RS12045 242395cf23262822df3b0e09571f6c49 557 SUPERFAMILY SSF52540 164 555 1.15E-91 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS12045 242395cf23262822df3b0e09571f6c49 557 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 41 134 2.9E-6 T 22-04-2016 IPR007831 General secretory system II, protein E, N-terminal GO:0005524|GO:0006810 PP4_RS12045 242395cf23262822df3b0e09571f6c49 557 PANTHER PTHR30258 126 555 3.0E-155 T 22-04-2016 PP4_RS12045 242395cf23262822df3b0e09571f6c49 557 PANTHER PTHR30258:SF2 126 555 3.0E-155 T 22-04-2016 PP4_RS12045 242395cf23262822df3b0e09571f6c49 557 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 375 389 - T 22-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 PP4_RS12045 242395cf23262822df3b0e09571f6c49 557 SUPERFAMILY SSF160246 18 112 4.97E-5 T 22-04-2016 PP4_RS12045 242395cf23262822df3b0e09571f6c49 557 Pfam PF00437 Type II/IV secretion system protein 179 446 6.5E-70 T 22-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 PP4_RS12045 242395cf23262822df3b0e09571f6c49 557 Gene3D G3DSA:3.30.450.90 150 275 3.4E-41 T 22-04-2016 PP4_RS12045 242395cf23262822df3b0e09571f6c49 557 Gene3D G3DSA:3.40.50.300 287 555 2.8E-94 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS12500 00c9a250cf020fadce0604ec77c7d909 154 Gene3D G3DSA:3.40.1000.10 1 144 1.4E-46 T 22-04-2016 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich PP4_RS12500 00c9a250cf020fadce0604ec77c7d909 154 SUPERFAMILY SSF55724 1 143 1.26E-42 T 22-04-2016 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich PP4_RS12500 00c9a250cf020fadce0604ec77c7d909 154 Pfam PF08786 Domain of unknown function (DUF1795) 7 138 3.0E-35 T 22-04-2016 IPR014894 Protein DcrB PP4_RS23745 b736d70702b2c224cdd3e58a2abba543 267 PIRSF PIRSF000161 1 267 5.9E-93 T 22-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PP4_RS23745 b736d70702b2c224cdd3e58a2abba543 267 PANTHER PTHR20836:SF0 3 266 1.1E-101 T 22-04-2016 PP4_RS23745 b736d70702b2c224cdd3e58a2abba543 267 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 3 125 3.8E-43 T 22-04-2016 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PP4_RS23745 b736d70702b2c224cdd3e58a2abba543 267 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 128 264 4.1E-44 T 22-04-2016 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PP4_RS23745 b736d70702b2c224cdd3e58a2abba543 267 SUPERFAMILY SSF55347 127 236 2.16E-38 T 22-04-2016 PP4_RS23745 b736d70702b2c224cdd3e58a2abba543 267 PANTHER PTHR20836 3 266 1.1E-101 T 22-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PP4_RS23745 b736d70702b2c224cdd3e58a2abba543 267 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 150 167 - T 22-04-2016 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PP4_RS23745 b736d70702b2c224cdd3e58a2abba543 267 SUPERFAMILY SSF51735 236 266 5.19E-53 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS23745 b736d70702b2c224cdd3e58a2abba543 267 SUPERFAMILY SSF51735 1 126 5.19E-53 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS23745 b736d70702b2c224cdd3e58a2abba543 267 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 2 265 36.46 T 22-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PP4_RS23745 b736d70702b2c224cdd3e58a2abba543 267 Gene3D G3DSA:3.40.50.720 2 163 1.2E-60 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS23745 b736d70702b2c224cdd3e58a2abba543 267 TIGRFAM TIGR00036 dapB: 4-hydroxy-tetrahydrodipicolinate reductase 3 265 6.3E-103 T 22-04-2016 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 SMART SM00073 439 536 0.0016 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 SMART SM00073 575 677 0.14 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 SMART SM00073 888 985 2.9E-8 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 Pfam PF00072 Response regulator receiver domain 1528 1639 7.1E-28 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 SMART SM00260 1354 1498 7.8E-22 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 SUPERFAMILY SSF55874 1178 1359 4.1E-36 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 PANTHER PTHR22617 888 1088 4.3E-187 T 22-04-2016 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 PANTHER PTHR22617 1154 1514 4.3E-187 T 22-04-2016 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 PANTHER PTHR22617 61 70 4.3E-187 T 22-04-2016 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 SMART SM00387 1221 1362 4.5E-24 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 SUPERFAMILY SSF52172 1528 1644 5.98E-37 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 Gene3D G3DSA:3.40.50.2300 1524 1644 9.5E-38 T 22-04-2016 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 SUPERFAMILY SSF50341 1361 1494 7.59E-22 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 SMART SM00448 1526 1639 6.3E-36 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 PANTHER PTHR22617:SF28 888 1088 4.3E-187 T 22-04-2016 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 PANTHER PTHR22617:SF28 1154 1514 4.3E-187 T 22-04-2016 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 PANTHER PTHR22617:SF28 61 70 4.3E-187 T 22-04-2016 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 Pfam PF01627 Hpt domain 890 982 4.3E-16 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 Pfam PF01627 Hpt domain 441 528 2.0E-13 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 Pfam PF01627 Hpt domain 16 108 1.1E-7 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 Pfam PF01627 Hpt domain 577 671 3.7E-11 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 SMART SM01231 1039 1176 2.9E-9 T 22-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 Gene3D G3DSA:1.20.120.160 26 144 1.0E-12 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 Gene3D G3DSA:1.20.120.160 575 705 4.3E-17 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 Gene3D G3DSA:1.20.120.160 438 569 1.8E-30 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 Gene3D G3DSA:1.20.120.160 889 1019 2.9E-31 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 Gene3D G3DSA:1.20.120.160 714 843 4.7E-17 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 SUPERFAMILY SSF47226 575 696 5.23E-20 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1225 1361 1.5E-14 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 SUPERFAMILY SSF47226 23 135 1.44E-18 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 Gene3D G3DSA:3.30.565.10 1179 1360 4.1E-32 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 SUPERFAMILY SSF47226 715 837 1.24E-14 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 SUPERFAMILY SSF47226 889 1006 5.76E-27 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 Pfam PF01584 CheW-like domain 1367 1498 2.6E-20 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 SUPERFAMILY SSF47226 295 417 2.77E-9 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1346 1359 4.6E-11 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1266 1280 4.6E-11 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 PRINTS PR00344 Bacterial sensor protein C-terminal signature 1322 1340 4.6E-11 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 Gene3D G3DSA:2.30.30.40 1453 1494 2.9E-18 T 22-04-2016 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 Gene3D G3DSA:2.30.30.40 1361 1383 2.9E-18 T 22-04-2016 PP4_RS25480 0d4350b1358f88ea72f9fdfb764930ad 1647 SUPERFAMILY SSF47226 438 562 2.22E-27 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS23650 5dc7fed09da5859c00ef3b233f6008a7 89 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 6 89 3.4E-37 T 22-04-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 PP4_RS23650 5dc7fed09da5859c00ef3b233f6008a7 89 SMART SM01387 8 88 1.4E-48 T 22-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS23650 5dc7fed09da5859c00ef3b233f6008a7 89 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 11 88 4.0E-38 T 22-04-2016 PP4_RS23650 5dc7fed09da5859c00ef3b233f6008a7 89 Gene3D G3DSA:1.10.287.10 3 89 5.9E-37 T 22-04-2016 IPR009068 S15/NS1, RNA-binding Reactome: REACT_71 PP4_RS23650 5dc7fed09da5859c00ef3b233f6008a7 89 ProSitePatterns PS00362 Ribosomal protein S15 signature. 39 69 - T 22-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS23650 5dc7fed09da5859c00ef3b233f6008a7 89 Pfam PF00312 Ribosomal protein S15 8 88 2.8E-35 T 22-04-2016 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS23650 5dc7fed09da5859c00ef3b233f6008a7 89 PANTHER PTHR23321 1 89 3.1E-44 T 22-04-2016 PP4_RS23650 5dc7fed09da5859c00ef3b233f6008a7 89 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 3 89 20.791 T 22-04-2016 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 PP4_RS23650 5dc7fed09da5859c00ef3b233f6008a7 89 SUPERFAMILY SSF47060 3 89 8.83E-34 T 22-04-2016 IPR009068 S15/NS1, RNA-binding Reactome: REACT_71 PP4_RS15715 a9085d03bfa3bdc483d2d8b9e3885124 433 SUPERFAMILY SSF103473 25 431 2.62E-58 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS15715 a9085d03bfa3bdc483d2d8b9e3885124 433 Pfam PF07690 Major Facilitator Superfamily 33 379 2.4E-23 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS15715 a9085d03bfa3bdc483d2d8b9e3885124 433 Gene3D G3DSA:1.20.1250.20 25 233 6.9E-22 T 22-04-2016 PP4_RS15715 a9085d03bfa3bdc483d2d8b9e3885124 433 Gene3D G3DSA:1.20.1250.20 249 429 1.0E-13 T 22-04-2016 PP4_RS15715 a9085d03bfa3bdc483d2d8b9e3885124 433 PANTHER PTHR23508 25 431 1.1E-108 T 22-04-2016 PP4_RS22045 0394f70572dcf5bc78cabc4b1bb6daa9 481 SUPERFAMILY SSF89095 297 402 1.83E-35 T 22-04-2016 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-related GO:0016884 PP4_RS22045 0394f70572dcf5bc78cabc4b1bb6daa9 481 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 144 158 - T 22-04-2016 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 PP4_RS22045 0394f70572dcf5bc78cabc4b1bb6daa9 481 SMART SM00845 328 479 1.7E-77 T 22-04-2016 IPR018027 Asn/Gln amidotransferase GO:0016884 PP4_RS22045 0394f70572dcf5bc78cabc4b1bb6daa9 481 PANTHER PTHR11659:SF0 2 480 6.1E-253 T 22-04-2016 PP4_RS22045 0394f70572dcf5bc78cabc4b1bb6daa9 481 PANTHER PTHR11659 2 480 6.1E-253 T 22-04-2016 IPR017959 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E GO:0016884 PP4_RS22045 0394f70572dcf5bc78cabc4b1bb6daa9 481 SUPERFAMILY SSF55931 4 296 7.19E-121 T 22-04-2016 PP4_RS22045 0394f70572dcf5bc78cabc4b1bb6daa9 481 Pfam PF02637 GatB domain 328 479 1.8E-50 T 22-04-2016 IPR018027 Asn/Gln amidotransferase GO:0016884 PP4_RS22045 0394f70572dcf5bc78cabc4b1bb6daa9 481 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 1 479 1.9E-169 T 22-04-2016 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 PP4_RS22045 0394f70572dcf5bc78cabc4b1bb6daa9 481 Pfam PF02934 GatB/GatE catalytic domain 5 289 1.8E-112 T 22-04-2016 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 PP4_RS22045 0394f70572dcf5bc78cabc4b1bb6daa9 481 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 2 480 38.595 T 22-04-2016 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 PP4_RS13000 dfb43355d95866fa64ac923f4fbe637d 201 PANTHER PTHR35568 3 200 1.8E-57 T 22-04-2016 PP4_RS13000 dfb43355d95866fa64ac923f4fbe637d 201 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 3 108 2.0E-47 T 22-04-2016 IPR013559 YheO-like PP4_RS13000 dfb43355d95866fa64ac923f4fbe637d 201 PANTHER PTHR35568:SF1 3 200 1.8E-57 T 22-04-2016 PP4_RS13000 dfb43355d95866fa64ac923f4fbe637d 201 Pfam PF08348 YheO-like PAS domain 3 108 6.7E-23 T 22-04-2016 IPR013559 YheO-like PP4_RS13000 dfb43355d95866fa64ac923f4fbe637d 201 Pfam PF13309 HTH domain 136 197 1.8E-16 T 22-04-2016 PP4_RS14340 84ada205d8adc4b223f819817713c0b5 537 SUPERFAMILY SSF47384 158 235 8.63E-9 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS14340 84ada205d8adc4b223f819817713c0b5 537 PANTHER PTHR24423 167 536 1.4E-119 T 22-04-2016 PP4_RS14340 84ada205d8adc4b223f819817713c0b5 537 PANTHER PTHR24423 130 146 1.4E-119 T 22-04-2016 PP4_RS14340 84ada205d8adc4b223f819817713c0b5 537 Gene3D G3DSA:3.40.50.2300 416 535 1.6E-33 T 22-04-2016 PP4_RS14340 84ada205d8adc4b223f819817713c0b5 537 SUPERFAMILY SSF55874 232 401 3.01E-31 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS14340 84ada205d8adc4b223f819817713c0b5 537 SMART SM00448 418 530 1.0E-28 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS14340 84ada205d8adc4b223f819817713c0b5 537 Gene3D G3DSA:3.30.565.10 239 398 3.5E-32 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS14340 84ada205d8adc4b223f819817713c0b5 537 SMART SM00387 278 400 5.3E-22 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS14340 84ada205d8adc4b223f819817713c0b5 537 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 279 398 1.2E-16 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS14340 84ada205d8adc4b223f819817713c0b5 537 PRINTS PR00344 Bacterial sensor protein C-terminal signature 384 397 1.7E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS14340 84ada205d8adc4b223f819817713c0b5 537 PRINTS PR00344 Bacterial sensor protein C-terminal signature 360 378 1.7E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS14340 84ada205d8adc4b223f819817713c0b5 537 PRINTS PR00344 Bacterial sensor protein C-terminal signature 347 357 1.7E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS14340 84ada205d8adc4b223f819817713c0b5 537 PRINTS PR00344 Bacterial sensor protein C-terminal signature 329 343 1.7E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS14340 84ada205d8adc4b223f819817713c0b5 537 Pfam PF00072 Response regulator receiver domain 420 530 5.8E-20 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS14340 84ada205d8adc4b223f819817713c0b5 537 PANTHER PTHR24423:SF438 130 146 1.4E-119 T 22-04-2016 PP4_RS14340 84ada205d8adc4b223f819817713c0b5 537 PANTHER PTHR24423:SF438 167 536 1.4E-119 T 22-04-2016 PP4_RS14340 84ada205d8adc4b223f819817713c0b5 537 SMART SM00388 171 239 8.4E-5 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS14340 84ada205d8adc4b223f819817713c0b5 537 SUPERFAMILY SSF52172 416 535 7.83E-31 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS15830 335f86fae83dc8bf92625c0fb6371580 123 SUPERFAMILY SSF55298 8 123 3.46E-30 T 22-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like PP4_RS15830 335f86fae83dc8bf92625c0fb6371580 123 Gene3D G3DSA:3.30.1330.40 8 122 3.0E-30 T 22-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like PP4_RS15830 335f86fae83dc8bf92625c0fb6371580 123 Pfam PF01042 Endoribonuclease L-PSP 13 121 1.2E-22 T 22-04-2016 IPR006175 YjgF/YER057c/UK114 family PP4_RS15830 335f86fae83dc8bf92625c0fb6371580 123 PANTHER PTHR11803 19 121 1.6E-29 T 22-04-2016 IPR006175 YjgF/YER057c/UK114 family PP4_RS17565 559f1cbcf5fda5ea613aed491f39ccd4 325 Gene3D G3DSA:2.40.440.10 92 234 8.5E-33 T 22-04-2016 PP4_RS17565 559f1cbcf5fda5ea613aed491f39ccd4 325 PANTHER PTHR30582 24 311 5.4E-92 T 22-04-2016 PP4_RS17565 559f1cbcf5fda5ea613aed491f39ccd4 325 SUPERFAMILY SSF141523 97 232 1.06E-29 T 22-04-2016 PP4_RS17565 559f1cbcf5fda5ea613aed491f39ccd4 325 Pfam PF03734 L,D-transpeptidase catalytic domain 99 232 8.2E-18 T 22-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 PP4_RS17565 559f1cbcf5fda5ea613aed491f39ccd4 325 PANTHER PTHR30582:SF1 24 311 5.4E-92 T 22-04-2016 PP4_RS21605 bd90449d1e067da88efc3bef2ce8396b 275 PANTHER PTHR21666 111 270 1.1E-39 T 22-04-2016 PP4_RS21605 bd90449d1e067da88efc3bef2ce8396b 275 Pfam PF01551 Peptidase family M23 172 266 3.6E-28 T 22-04-2016 IPR016047 Peptidase M23 PP4_RS21605 bd90449d1e067da88efc3bef2ce8396b 275 SUPERFAMILY SSF51261 102 270 3.35E-48 T 22-04-2016 IPR011055 Duplicated hybrid motif PP4_RS21605 bd90449d1e067da88efc3bef2ce8396b 275 Gene3D G3DSA:2.70.70.10 125 271 2.5E-43 T 22-04-2016 PP4_RS21605 bd90449d1e067da88efc3bef2ce8396b 275 Gene3D G3DSA:2.60.40.1590 24 117 3.1E-36 T 22-04-2016 PP4_RS20325 fcfaae69dbc0e41f3258d121695c5ae5 103 Pfam PF04341 Protein of unknown function, DUF485 10 98 4.9E-35 T 22-04-2016 IPR007436 Protein of unknown function DUF485 PP4_RS20325 fcfaae69dbc0e41f3258d121695c5ae5 103 PANTHER PTHR38598 2 103 3.4E-44 T 22-04-2016 PP4_RS11015 27f51cd6ce9be796446314138304c8df 150 SMART SM00344 1 110 6.7E-48 T 22-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 PP4_RS11015 27f51cd6ce9be796446314138304c8df 150 Pfam PF13412 Winged helix-turn-helix DNA-binding 1 47 4.9E-21 T 22-04-2016 PP4_RS11015 27f51cd6ce9be796446314138304c8df 150 ProSitePatterns PS00519 AsnC-type HTH domain signature. 19 45 - T 22-04-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PP4_RS11015 27f51cd6ce9be796446314138304c8df 150 PANTHER PTHR30154:SF28 1 150 5.6E-60 T 22-04-2016 PP4_RS11015 27f51cd6ce9be796446314138304c8df 150 SUPERFAMILY SSF46785 1 60 2.39E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS11015 27f51cd6ce9be796446314138304c8df 150 SUPERFAMILY SSF54909 63 149 1.88E-17 T 22-04-2016 IPR011008 Dimeric alpha-beta barrel PP4_RS11015 27f51cd6ce9be796446314138304c8df 150 Gene3D G3DSA:3.30.70.920 54 149 2.1E-25 T 22-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PP4_RS11015 27f51cd6ce9be796446314138304c8df 150 Gene3D G3DSA:1.10.10.10 2 53 2.1E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS11015 27f51cd6ce9be796446314138304c8df 150 PANTHER PTHR30154 1 150 5.6E-60 T 22-04-2016 PP4_RS11015 27f51cd6ce9be796446314138304c8df 150 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 1.7E-18 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS11015 27f51cd6ce9be796446314138304c8df 150 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 1.7E-18 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS11015 27f51cd6ce9be796446314138304c8df 150 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 1.7E-18 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS11015 27f51cd6ce9be796446314138304c8df 150 Pfam PF01037 Lrp/AsnC ligand binding domain 69 141 1.6E-19 T 22-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PP4_RS07495 513f8ae0167ef90c8a39c4890efdfe68 297 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 162 4.0E-51 T 22-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 PP4_RS07495 513f8ae0167ef90c8a39c4890efdfe68 297 Gene3D G3DSA:1.10.1040.10 165 292 5.3E-41 T 22-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PP4_RS07495 513f8ae0167ef90c8a39c4890efdfe68 297 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 165 283 1.1E-36 T 22-04-2016 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 PP4_RS07495 513f8ae0167ef90c8a39c4890efdfe68 297 Gene3D G3DSA:3.40.50.720 1 163 7.3E-58 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS07495 513f8ae0167ef90c8a39c4890efdfe68 297 TIGRFAM TIGR01505 tartro_sem_red: 2-hydroxy-3-oxopropionate reductase 3 291 1.1E-122 T 22-04-2016 IPR006398 2-hydroxy-3-oxopropionate reductase GO:0008679|GO:0046487|GO:0055114 KEGG: 00630+1.1.1.60 PP4_RS07495 513f8ae0167ef90c8a39c4890efdfe68 297 SUPERFAMILY SSF48179 164 291 4.42E-38 T 22-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PP4_RS07495 513f8ae0167ef90c8a39c4890efdfe68 297 PANTHER PTHR22981:SF70 1 294 4.0E-133 T 22-04-2016 PP4_RS07495 513f8ae0167ef90c8a39c4890efdfe68 297 SUPERFAMILY SSF51735 2 162 2.48E-46 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS07495 513f8ae0167ef90c8a39c4890efdfe68 297 PIRSF PIRSF000103 1 291 6.1E-79 T 22-04-2016 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 PP4_RS07495 513f8ae0167ef90c8a39c4890efdfe68 297 PANTHER PTHR22981 1 294 4.0E-133 T 22-04-2016 PP4_RS04175 0563aa62c4119a60d4ca6ccb9c59a51c 398 PIRSF PIRSF001434 1 398 4.6E-145 T 22-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 PP4_RS04175 0563aa62c4119a60d4ca6ccb9c59a51c 398 PANTHER PTHR11808 9 398 3.8E-187 T 22-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 PP4_RS04175 0563aa62c4119a60d4ca6ccb9c59a51c 398 TIGRFAM TIGR01328 met_gam_lyase: methionine gamma-lyase 8 396 6.5E-171 T 22-04-2016 IPR006237 L-methionine gamma-lyase GO:0018826 PP4_RS04175 0563aa62c4119a60d4ca6ccb9c59a51c 398 SUPERFAMILY SSF53383 29 395 1.5E-121 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS04175 0563aa62c4119a60d4ca6ccb9c59a51c 398 Gene3D G3DSA:3.90.1150.10 261 396 1.2E-52 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS04175 0563aa62c4119a60d4ca6ccb9c59a51c 398 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 12 395 8.2E-141 T 22-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 PP4_RS04175 0563aa62c4119a60d4ca6ccb9c59a51c 398 Gene3D G3DSA:3.40.640.10 9 260 1.0E-94 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS04175 0563aa62c4119a60d4ca6ccb9c59a51c 398 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 203 217 - T 22-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 PP4_RS07855 2baafd6ee0f48d988de34c0d5e2a5eac 440 SUPERFAMILY SSF47384 207 286 3.34E-13 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS07855 2baafd6ee0f48d988de34c0d5e2a5eac 440 Pfam PF08521 Two-component sensor kinase N-terminal 17 147 1.4E-7 T 22-04-2016 IPR013727 Two-component sensor kinase, N-terminal PP4_RS07855 2baafd6ee0f48d988de34c0d5e2a5eac 440 SUPERFAMILY SSF55874 315 435 8.38E-25 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS07855 2baafd6ee0f48d988de34c0d5e2a5eac 440 SMART SM00388 224 288 2.5E-11 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS07855 2baafd6ee0f48d988de34c0d5e2a5eac 440 SMART SM00387 333 438 2.3E-20 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS07855 2baafd6ee0f48d988de34c0d5e2a5eac 440 PRINTS PR00344 Bacterial sensor protein C-terminal signature 399 417 2.0E-6 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS07855 2baafd6ee0f48d988de34c0d5e2a5eac 440 PRINTS PR00344 Bacterial sensor protein C-terminal signature 369 383 2.0E-6 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS07855 2baafd6ee0f48d988de34c0d5e2a5eac 440 Gene3D G3DSA:3.30.565.10 274 436 3.0E-27 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS07855 2baafd6ee0f48d988de34c0d5e2a5eac 440 Pfam PF00512 His Kinase A (phospho-acceptor) domain 226 287 9.7E-11 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS07855 2baafd6ee0f48d988de34c0d5e2a5eac 440 PANTHER PTHR24423 162 437 4.5E-52 T 22-04-2016 PP4_RS07855 2baafd6ee0f48d988de34c0d5e2a5eac 440 Gene3D G3DSA:1.10.287.130 217 273 4.9E-10 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS07855 2baafd6ee0f48d988de34c0d5e2a5eac 440 PANTHER PTHR24423:SF474 162 437 4.5E-52 T 22-04-2016 PP4_RS07855 2baafd6ee0f48d988de34c0d5e2a5eac 440 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 341 435 1.4E-15 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS11740 79b9b12f1004928cbe503456acde53cf 70 Pfam PF13396 Phospholipase_D-nuclease N-terminal 19 53 3.7E-7 T 22-04-2016 IPR027379 Cardiolipin synthase N-terminal PP4_RS16940 ac37f7a838eee269bdb654c0f2d0b3fe 276 Gene3D G3DSA:2.60.120.280 15 130 8.8E-20 T 22-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PP4_RS16940 ac37f7a838eee269bdb654c0f2d0b3fe 276 Gene3D G3DSA:1.10.10.60 224 270 6.3E-13 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS16940 ac37f7a838eee269bdb654c0f2d0b3fe 276 Gene3D G3DSA:1.10.10.60 173 223 5.1E-16 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS16940 ac37f7a838eee269bdb654c0f2d0b3fe 276 Pfam PF12833 Helix-turn-helix domain 192 270 2.0E-21 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS16940 ac37f7a838eee269bdb654c0f2d0b3fe 276 SUPERFAMILY SSF51215 15 155 4.45E-25 T 22-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PP4_RS16940 ac37f7a838eee269bdb654c0f2d0b3fe 276 SUPERFAMILY SSF46689 173 220 3.23E-10 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS16940 ac37f7a838eee269bdb654c0f2d0b3fe 276 Pfam PF02311 AraC-like ligand binding domain 16 132 1.4E-24 T 22-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PP4_RS16940 ac37f7a838eee269bdb654c0f2d0b3fe 276 PANTHER PTHR11019 21 276 8.8E-94 T 22-04-2016 PP4_RS16940 ac37f7a838eee269bdb654c0f2d0b3fe 276 SMART SM00342 186 268 6.0E-25 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS16940 ac37f7a838eee269bdb654c0f2d0b3fe 276 PANTHER PTHR11019:SF108 21 276 8.8E-94 T 22-04-2016 PP4_RS16940 ac37f7a838eee269bdb654c0f2d0b3fe 276 SUPERFAMILY SSF46689 222 271 2.28E-10 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS06010 50efcaa5907c1ae946faf3bddee0c3e1 295 SMART SM01130 1 292 1.5E-146 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS06010 50efcaa5907c1ae946faf3bddee0c3e1 295 PANTHER PTHR12128 1 295 6.4E-139 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS06010 50efcaa5907c1ae946faf3bddee0c3e1 295 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 136 166 - T 22-04-2016 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PP4_RS06010 50efcaa5907c1ae946faf3bddee0c3e1 295 Pfam PF00701 Dihydrodipicolinate synthetase family 2 290 3.5E-104 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS06010 50efcaa5907c1ae946faf3bddee0c3e1 295 PRINTS PR00146 Dihydrodipicolinate synthase signature 74 92 5.9E-34 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS06010 50efcaa5907c1ae946faf3bddee0c3e1 295 PRINTS PR00146 Dihydrodipicolinate synthase signature 106 122 5.9E-34 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS06010 50efcaa5907c1ae946faf3bddee0c3e1 295 PRINTS PR00146 Dihydrodipicolinate synthase signature 131 148 5.9E-34 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS06010 50efcaa5907c1ae946faf3bddee0c3e1 295 PRINTS PR00146 Dihydrodipicolinate synthase signature 35 56 5.9E-34 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS06010 50efcaa5907c1ae946faf3bddee0c3e1 295 ProSitePatterns PS00665 Dihydrodipicolinate synthase signature 1. 38 55 - T 22-04-2016 IPR020624 Schiff base-forming aldolase, conserved site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PP4_RS06010 50efcaa5907c1ae946faf3bddee0c3e1 295 Gene3D G3DSA:3.20.20.70 1 294 1.2E-118 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS06010 50efcaa5907c1ae946faf3bddee0c3e1 295 PANTHER PTHR12128:SF34 1 295 6.4E-139 T 22-04-2016 PP4_RS06010 50efcaa5907c1ae946faf3bddee0c3e1 295 PIRSF PIRSF001365 1 294 1.6E-95 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS06010 50efcaa5907c1ae946faf3bddee0c3e1 295 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 5 290 4.7E-112 T 22-04-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PP4_RS06010 50efcaa5907c1ae946faf3bddee0c3e1 295 SUPERFAMILY SSF51569 2 291 9.52E-103 T 22-04-2016 PP4_RS06010 50efcaa5907c1ae946faf3bddee0c3e1 295 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 1 290 66.757 T 22-04-2016 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PP4_RS19185 92d93491dacf43c3889b33fbc214a530 885 PANTHER PTHR11533:SF152 619 884 0.0 T 22-04-2016 PP4_RS19185 92d93491dacf43c3889b33fbc214a530 885 PANTHER PTHR11533:SF152 2 595 0.0 T 22-04-2016 PP4_RS19185 92d93491dacf43c3889b33fbc214a530 885 SUPERFAMILY SSF63737 4 199 2.75E-43 T 22-04-2016 PP4_RS19185 92d93491dacf43c3889b33fbc214a530 885 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 132 147 8.0E-11 T 22-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 PP4_RS19185 92d93491dacf43c3889b33fbc214a530 885 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 264 274 8.0E-11 T 22-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 PP4_RS19185 92d93491dacf43c3889b33fbc214a530 885 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 300 315 8.0E-11 T 22-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 PP4_RS19185 92d93491dacf43c3889b33fbc214a530 885 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 319 331 8.0E-11 T 22-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 PP4_RS19185 92d93491dacf43c3889b33fbc214a530 885 PRINTS PR00756 Membrane alanyl dipeptidase (M1) family signature 182 197 8.0E-11 T 22-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 PP4_RS19185 92d93491dacf43c3889b33fbc214a530 885 SUPERFAMILY SSF55486 211 456 6.41E-78 T 22-04-2016 PP4_RS19185 92d93491dacf43c3889b33fbc214a530 885 PANTHER PTHR11533 619 884 0.0 T 22-04-2016 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase GO:0006508 PP4_RS19185 92d93491dacf43c3889b33fbc214a530 885 PANTHER PTHR11533 2 595 0.0 T 22-04-2016 IPR001930 Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase GO:0006508 PP4_RS19185 92d93491dacf43c3889b33fbc214a530 885 TIGRFAM TIGR02414 pepN_proteo: aminopeptidase N 13 884 0.0 T 22-04-2016 IPR012779 Peptidase M1, alanyl aminopeptidase GO:0008270 PP4_RS19185 92d93491dacf43c3889b33fbc214a530 885 Gene3D G3DSA:1.25.50.10 556 885 8.5E-130 T 22-04-2016 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal PP4_RS19185 92d93491dacf43c3889b33fbc214a530 885 Pfam PF11940 Domain of unknown function (DUF3458) 465 840 1.8E-141 T 22-04-2016 IPR024601 Peptidase M1, alanyl aminopeptidase, C-terminal PP4_RS19185 92d93491dacf43c3889b33fbc214a530 885 Gene3D G3DSA:1.10.390.10 314 457 8.5E-33 T 22-04-2016 PP4_RS19185 92d93491dacf43c3889b33fbc214a530 885 Pfam PF01433 Peptidase family M1 108 390 1.3E-69 T 22-04-2016 IPR014782 Peptidase M1, membrane alanine aminopeptidase, N-terminal GO:0008237|GO:0008270 PP4_RS12355 b60c8ff754f5212de1eb5228aef8f134 169 Gene3D G3DSA:1.10.10.10 112 160 8.6E-11 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS12355 b60c8ff754f5212de1eb5228aef8f134 169 Pfam PF08281 Sigma-70, region 4 114 160 1.1E-11 T 22-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS12355 b60c8ff754f5212de1eb5228aef8f134 169 Gene3D G3DSA:1.10.1740.10 12 83 2.0E-9 T 22-04-2016 PP4_RS12355 b60c8ff754f5212de1eb5228aef8f134 169 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 15 160 1.0E-15 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS12355 b60c8ff754f5212de1eb5228aef8f134 169 PANTHER PTHR30173 11 164 8.9E-35 T 22-04-2016 PP4_RS12355 b60c8ff754f5212de1eb5228aef8f134 169 SUPERFAMILY SSF88946 13 99 2.98E-12 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS12355 b60c8ff754f5212de1eb5228aef8f134 169 Pfam PF04542 Sigma-70 region 2 15 81 5.1E-9 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS12355 b60c8ff754f5212de1eb5228aef8f134 169 SUPERFAMILY SSF88659 106 164 3.92E-11 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS12355 b60c8ff754f5212de1eb5228aef8f134 169 PANTHER PTHR30173:SF9 11 164 8.9E-35 T 22-04-2016 PP4_RS17435 a2553bef28e58a66a0e68fe8c83a61d7 384 SUPERFAMILY SSF54631 233 364 8.22E-31 T 22-04-2016 PP4_RS17435 a2553bef28e58a66a0e68fe8c83a61d7 384 Pfam PF04982 HPP family 55 174 1.1E-29 T 22-04-2016 IPR007065 HPP PP4_RS17435 a2553bef28e58a66a0e68fe8c83a61d7 384 Pfam PF00571 CBS domain 241 291 6.6E-11 T 22-04-2016 IPR000644 CBS domain PP4_RS17435 a2553bef28e58a66a0e68fe8c83a61d7 384 Pfam PF00571 CBS domain 314 364 2.0E-8 T 22-04-2016 IPR000644 CBS domain PP4_RS17435 a2553bef28e58a66a0e68fe8c83a61d7 384 SMART SM00116 248 295 7.2E-5 T 22-04-2016 IPR000644 CBS domain PP4_RS17435 a2553bef28e58a66a0e68fe8c83a61d7 384 SMART SM00116 320 367 4.8E-7 T 22-04-2016 IPR000644 CBS domain PP4_RS17435 a2553bef28e58a66a0e68fe8c83a61d7 384 Gene3D G3DSA:3.10.580.10 239 368 3.8E-29 T 22-04-2016 PP4_RS17435 a2553bef28e58a66a0e68fe8c83a61d7 384 PANTHER PTHR11911 206 292 2.1E-21 T 22-04-2016 PP4_RS17435 a2553bef28e58a66a0e68fe8c83a61d7 384 PANTHER PTHR11911 312 363 2.1E-21 T 22-04-2016 PP4_RS21320 b71e0c92437a8ebced1629072fff7aa4 569 TIGRFAM TIGR00644 recJ: single-stranded-DNA-specific exonuclease RecJ 20 564 3.5E-155 T 22-04-2016 IPR004610 Bacterial RecJ exonuclease GO:0006281|GO:0006310|GO:0008409 PP4_RS21320 b71e0c92437a8ebced1629072fff7aa4 569 PANTHER PTHR30255 17 569 2.1E-222 T 22-04-2016 PP4_RS21320 b71e0c92437a8ebced1629072fff7aa4 569 SUPERFAMILY SSF64182 44 457 9.68E-122 T 22-04-2016 PP4_RS21320 b71e0c92437a8ebced1629072fff7aa4 569 Pfam PF01368 DHH family 69 208 1.8E-10 T 22-04-2016 IPR001667 DDH domain PP4_RS21320 b71e0c92437a8ebced1629072fff7aa4 569 Pfam PF02272 DHHA1 domain 374 443 1.8E-15 T 22-04-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7 PP4_RS21320 b71e0c92437a8ebced1629072fff7aa4 569 PANTHER PTHR30255:SF2 17 569 2.1E-222 T 22-04-2016 PP4_RS18225 26dfcadbf469e400e18ea2510582ab9e 359 PANTHER PTHR30222 1 357 1.0E-121 T 22-04-2016 PP4_RS18225 26dfcadbf469e400e18ea2510582ab9e 359 Gene3D G3DSA:3.40.190.10 137 307 3.0E-54 T 22-04-2016 PP4_RS18225 26dfcadbf469e400e18ea2510582ab9e 359 PANTHER PTHR30222:SF11 1 357 1.0E-121 T 22-04-2016 PP4_RS18225 26dfcadbf469e400e18ea2510582ab9e 359 SUPERFAMILY SSF53850 20 355 2.25E-90 T 22-04-2016 PP4_RS18225 26dfcadbf469e400e18ea2510582ab9e 359 PIRSF PIRSF019574 4 359 2.0E-115 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS18225 26dfcadbf469e400e18ea2510582ab9e 359 Pfam PF13416 Bacterial extracellular solute-binding protein 38 324 2.2E-31 T 22-04-2016 PP4_RS18225 26dfcadbf469e400e18ea2510582ab9e 359 Gene3D G3DSA:3.40.190.10 23 136 1.5E-18 T 22-04-2016 PP4_RS18225 26dfcadbf469e400e18ea2510582ab9e 359 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 42 63 1.3E-53 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS18225 26dfcadbf469e400e18ea2510582ab9e 359 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 118 134 1.3E-53 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS18225 26dfcadbf469e400e18ea2510582ab9e 359 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 69 83 1.3E-53 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS18225 26dfcadbf469e400e18ea2510582ab9e 359 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 258 277 1.3E-53 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS18225 26dfcadbf469e400e18ea2510582ab9e 359 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 26 42 1.3E-53 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS18225 26dfcadbf469e400e18ea2510582ab9e 359 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 85 98 1.3E-53 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS18225 26dfcadbf469e400e18ea2510582ab9e 359 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 171 190 1.3E-53 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS18225 26dfcadbf469e400e18ea2510582ab9e 359 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 303 329 1.3E-53 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS18225 26dfcadbf469e400e18ea2510582ab9e 359 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 148 162 1.3E-53 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS18225 26dfcadbf469e400e18ea2510582ab9e 359 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 208 227 1.3E-53 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS16660 c04e6f15251f6182a427e6d4b8fe322d 407 Pfam PF03583 Secretory lipase 137 231 5.8E-7 T 22-04-2016 IPR005152 Lipase, secreted GO:0004806|GO:0016042 KEGG: 00561+3.1.1.3|MetaCyc: PWY-6857 PP4_RS16660 c04e6f15251f6182a427e6d4b8fe322d 407 PIRSF PIRSF029171 1 402 1.3E-125 T 22-04-2016 IPR005152 Lipase, secreted GO:0004806|GO:0016042 KEGG: 00561+3.1.1.3|MetaCyc: PWY-6857 PP4_RS16660 c04e6f15251f6182a427e6d4b8fe322d 407 Gene3D G3DSA:3.40.50.1820 92 380 8.6E-14 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS16660 c04e6f15251f6182a427e6d4b8fe322d 407 SUPERFAMILY SSF53474 90 270 6.99E-20 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS16660 c04e6f15251f6182a427e6d4b8fe322d 407 SUPERFAMILY SSF53474 319 382 6.99E-20 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS03390 99f11525b8d26d3653c6e3226e9de7fb 315 Pfam PF00962 Adenosine/AMP deaminase 8 310 2.0E-70 T 22-04-2016 IPR001365 Adenosine/AMP deaminase domain GO:0019239 PP4_RS03390 99f11525b8d26d3653c6e3226e9de7fb 315 TIGRFAM TIGR01430 aden_deam: adenosine deaminase 8 312 8.7E-110 T 22-04-2016 IPR006330 Adenosine/adenine deaminase GO:0019239 PP4_RS03390 99f11525b8d26d3653c6e3226e9de7fb 315 PANTHER PTHR11409:SF41 1 312 9.9E-171 T 22-04-2016 PP4_RS03390 99f11525b8d26d3653c6e3226e9de7fb 315 PANTHER PTHR11409 1 312 9.9E-171 T 22-04-2016 PP4_RS03390 99f11525b8d26d3653c6e3226e9de7fb 315 SUPERFAMILY SSF51556 2 312 2.01E-84 T 22-04-2016 IPR032466 Metal-dependent hydrolase PP4_RS03390 99f11525b8d26d3653c6e3226e9de7fb 315 Gene3D G3DSA:3.20.20.140 4 312 1.2E-99 T 22-04-2016 PP4_RS03390 99f11525b8d26d3653c6e3226e9de7fb 315 Hamap MF_01962 Adenine deaminase. 4 315 84.776 T 22-04-2016 IPR028892 Adenine deaminase type 2 GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 PP4_RS03675 3e3ba88506df54a6b373843561aeb87b 325 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 6 184 5.3E-51 T 22-04-2016 IPR003495 CobW/HypB/UreG, nucleotide-binding domain PP4_RS03675 3e3ba88506df54a6b373843561aeb87b 325 SUPERFAMILY SSF90002 229 322 1.06E-21 T 22-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal PP4_RS03675 3e3ba88506df54a6b373843561aeb87b 325 SUPERFAMILY SSF52540 4 202 1.76E-39 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03675 3e3ba88506df54a6b373843561aeb87b 325 Gene3D G3DSA:3.30.1220.10 227 323 4.0E-30 T 22-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal PP4_RS03675 3e3ba88506df54a6b373843561aeb87b 325 SMART SM00833 229 323 9.0E-10 T 22-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal PP4_RS03675 3e3ba88506df54a6b373843561aeb87b 325 PANTHER PTHR13748 4 321 8.9E-124 T 22-04-2016 PP4_RS03675 3e3ba88506df54a6b373843561aeb87b 325 PANTHER PTHR13748:SF43 4 321 8.9E-124 T 22-04-2016 PP4_RS03675 3e3ba88506df54a6b373843561aeb87b 325 Gene3D G3DSA:3.40.50.300 4 204 5.7E-70 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03675 3e3ba88506df54a6b373843561aeb87b 325 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 229 322 3.2E-17 T 22-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal PP4_RS06525 d8afebe17e65ca317d6f279cdb2f77a1 375 PANTHER PTHR31384 67 308 1.0E-54 T 22-04-2016 PP4_RS06525 d8afebe17e65ca317d6f279cdb2f77a1 375 Pfam PF04339 Peptidogalycan biosysnthesis/recognition 10 373 9.1E-147 T 22-04-2016 IPR007434 Peptidogalycan biosysnthesis/recognition PP4_RS06525 d8afebe17e65ca317d6f279cdb2f77a1 375 Gene3D G3DSA:3.40.630.30 176 323 4.7E-21 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS06525 d8afebe17e65ca317d6f279cdb2f77a1 375 SUPERFAMILY SSF55729 175 345 5.83E-39 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS17645 c3d1b883893d11a024de9d017c4d4aa4 623 PANTHER PTHR10657 1 166 4.3E-139 T 22-04-2016 PP4_RS17645 c3d1b883893d11a024de9d017c4d4aa4 623 PANTHER PTHR10657 199 514 4.3E-139 T 22-04-2016 PP4_RS17645 c3d1b883893d11a024de9d017c4d4aa4 623 SUPERFAMILY SSF109998 199 235 2.62E-30 T 22-04-2016 IPR027304 Trigger factor/SurA domain PP4_RS17645 c3d1b883893d11a024de9d017c4d4aa4 623 SUPERFAMILY SSF109998 41 167 2.62E-30 T 22-04-2016 IPR027304 Trigger factor/SurA domain PP4_RS17645 c3d1b883893d11a024de9d017c4d4aa4 623 Gene3D G3DSA:1.10.3120.10 88 231 3.3E-4 T 22-04-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 PP4_RS17645 c3d1b883893d11a024de9d017c4d4aa4 623 SUPERFAMILY SSF54534 262 362 3.6E-33 T 22-04-2016 PP4_RS17645 c3d1b883893d11a024de9d017c4d4aa4 623 Pfam PF13624 SurA N-terminal domain 1 163 1.2E-43 T 22-04-2016 PP4_RS17645 c3d1b883893d11a024de9d017c4d4aa4 623 Gene3D G3DSA:3.10.50.40 262 382 3.8E-41 T 22-04-2016 PP4_RS17645 c3d1b883893d11a024de9d017c4d4aa4 623 Pfam PF13616 PPIC-type PPIASE domain 261 360 9.3E-29 T 22-04-2016 PP4_RS17645 c3d1b883893d11a024de9d017c4d4aa4 623 PANTHER PTHR10657:SF11 1 166 4.3E-139 T 22-04-2016 PP4_RS17645 c3d1b883893d11a024de9d017c4d4aa4 623 PANTHER PTHR10657:SF11 199 514 4.3E-139 T 22-04-2016 PP4_RS17645 c3d1b883893d11a024de9d017c4d4aa4 623 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 300 321 - T 22-04-2016 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site PP4_RS21775 0fc6484e685e9a9d2882b604328b21c3 373 Pfam PF01571 Aminomethyltransferase folate-binding domain 10 257 1.0E-91 T 22-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal PP4_RS21775 0fc6484e685e9a9d2882b604328b21c3 373 SUPERFAMILY SSF101790 279 372 1.26E-25 T 22-04-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain PP4_RS21775 0fc6484e685e9a9d2882b604328b21c3 373 Gene3D G3DSA:3.30.70.1400 58 140 1.4E-33 T 22-04-2016 PP4_RS21775 0fc6484e685e9a9d2882b604328b21c3 373 PIRSF PIRSF006487 1 373 9.5E-85 T 22-04-2016 IPR028896 Aminomethyltransferase/Dimethylsulfonioproprionate demethylase DmdA KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 PP4_RS21775 0fc6484e685e9a9d2882b604328b21c3 373 PANTHER PTHR13847 1 372 8.2E-211 T 22-04-2016 PP4_RS21775 0fc6484e685e9a9d2882b604328b21c3 373 PANTHER PTHR13847:SF209 1 372 8.2E-211 T 22-04-2016 PP4_RS21775 0fc6484e685e9a9d2882b604328b21c3 373 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 271 363 1.1E-22 T 22-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 PP4_RS21775 0fc6484e685e9a9d2882b604328b21c3 373 Gene3D G3DSA:2.40.30.110 287 372 8.8E-26 T 22-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 PP4_RS21775 0fc6484e685e9a9d2882b604328b21c3 373 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 6 367 3.8E-108 T 22-04-2016 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 PP4_RS21775 0fc6484e685e9a9d2882b604328b21c3 373 SUPERFAMILY SSF103025 5 286 2.51E-93 T 22-04-2016 PP4_RS21775 0fc6484e685e9a9d2882b604328b21c3 373 Gene3D G3DSA:3.30.1360.120 5 57 2.9E-56 T 22-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 PP4_RS21775 0fc6484e685e9a9d2882b604328b21c3 373 Gene3D G3DSA:3.30.1360.120 147 234 2.9E-56 T 22-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 PP4_RS26380 6d167dbc713f24ed1d5c711e2207c8f2 193 SUPERFAMILY SSF53474 9 178 1.15E-36 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS26380 6d167dbc713f24ed1d5c711e2207c8f2 193 Gene3D G3DSA:3.40.50.1820 7 183 8.2E-51 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS26380 6d167dbc713f24ed1d5c711e2207c8f2 193 Pfam PF06821 Serine hydrolase 8 179 1.6E-69 T 22-04-2016 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 KEGG: 00231+3.-.-.-|KEGG: 00563+3.-.-.-|KEGG: 00983+3.-.-.- PP4_RS08680 9e712bf9f55f8fbd68f959e4c5257517 717 TIGRFAM TIGR02100 glgX_debranch: glycogen debranching enzyme GlgX 20 711 0.0 T 22-04-2016 IPR011837 Glycogen debranching enzyme, GlgX type GO:0004133|GO:0004553|GO:0005980 UniPathway: UPA00165 PP4_RS08680 9e712bf9f55f8fbd68f959e4c5257517 717 Pfam PF00128 Alpha amylase, catalytic domain 205 293 2.7E-10 T 22-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 PP4_RS08680 9e712bf9f55f8fbd68f959e4c5257517 717 SUPERFAMILY SSF51011 604 711 1.94E-26 T 22-04-2016 PP4_RS08680 9e712bf9f55f8fbd68f959e4c5257517 717 PANTHER PTHR10357:SF74 4 594 0.0 T 22-04-2016 PP4_RS08680 9e712bf9f55f8fbd68f959e4c5257517 717 PANTHER PTHR10357:SF74 623 712 0.0 T 22-04-2016 PP4_RS08680 9e712bf9f55f8fbd68f959e4c5257517 717 SMART SM00642 173 583 1.1E-7 T 22-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 PP4_RS08680 9e712bf9f55f8fbd68f959e4c5257517 717 SUPERFAMILY SSF51445 154 486 6.41E-132 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily PP4_RS08680 9e712bf9f55f8fbd68f959e4c5257517 717 SUPERFAMILY SSF51445 515 591 6.41E-132 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily PP4_RS08680 9e712bf9f55f8fbd68f959e4c5257517 717 Gene3D G3DSA:2.60.40.10 20 170 1.5E-54 T 22-04-2016 IPR013783 Immunoglobulin-like fold PP4_RS08680 9e712bf9f55f8fbd68f959e4c5257517 717 Gene3D G3DSA:2.60.40.1180 604 711 3.3E-30 T 22-04-2016 IPR013780 Glycosyl hydrolase, all-beta PP4_RS08680 9e712bf9f55f8fbd68f959e4c5257517 717 Gene3D G3DSA:3.20.20.80 171 591 9.0E-123 T 22-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PP4_RS08680 9e712bf9f55f8fbd68f959e4c5257517 717 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 24 112 2.4E-17 T 22-04-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 PP4_RS08680 9e712bf9f55f8fbd68f959e4c5257517 717 SUPERFAMILY SSF81296 20 164 2.69E-48 T 22-04-2016 IPR014756 Immunoglobulin E-set PP4_RS08680 9e712bf9f55f8fbd68f959e4c5257517 717 PANTHER PTHR10357 4 594 0.0 T 22-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 PP4_RS08680 9e712bf9f55f8fbd68f959e4c5257517 717 PANTHER PTHR10357 623 712 0.0 T 22-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 PP4_RS06845 f503f05428673289d45d2a78c376eb06 487 PANTHER PTHR11699:SF197 1 453 3.9E-292 T 22-04-2016 PP4_RS06845 f503f05428673289d45d2a78c376eb06 487 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 243 250 - T 22-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 PP4_RS06845 f503f05428673289d45d2a78c376eb06 487 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 271 282 - T 22-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 PP4_RS06845 f503f05428673289d45d2a78c376eb06 487 TIGRFAM TIGR03240 arg_catab_astD: succinylglutamate-semialdehyde dehydrogenase 4 486 1.0E-261 T 22-04-2016 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71|UniPathway: UPA00185 PP4_RS06845 f503f05428673289d45d2a78c376eb06 487 SUPERFAMILY SSF53720 3 456 7.98E-122 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS06845 f503f05428673289d45d2a78c376eb06 487 PANTHER PTHR11699 1 453 3.9E-292 T 22-04-2016 PP4_RS06845 f503f05428673289d45d2a78c376eb06 487 Gene3D G3DSA:3.40.605.10 3 257 4.3E-74 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS06845 f503f05428673289d45d2a78c376eb06 487 Hamap MF_01174 N-succinylglutamate 5-semialdehyde dehydrogenase [astD]. 2 487 59.137 T 22-04-2016 IPR017649 Succinylglutamate-semialdehyde dehydrogenase GO:0006527|GO:0043824|GO:0055114 KEGG: 00330+1.2.1.71|UniPathway: UPA00185 PP4_RS06845 f503f05428673289d45d2a78c376eb06 487 Gene3D G3DSA:3.40.309.10 258 444 3.2E-41 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PP4_RS06845 f503f05428673289d45d2a78c376eb06 487 Pfam PF00171 Aldehyde dehydrogenase family 10 461 3.8E-121 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PP4_RS24765 b117a585b76b98a6aec1edec16b68e82 359 PANTHER PTHR30482 1 95 4.3E-190 T 22-04-2016 PP4_RS24765 b117a585b76b98a6aec1edec16b68e82 359 PANTHER PTHR30482 117 356 4.3E-190 T 22-04-2016 PP4_RS24765 b117a585b76b98a6aec1edec16b68e82 359 PANTHER PTHR30482:SF4 1 95 4.3E-190 T 22-04-2016 IPR017778 ABC transporter, urea, permease protein, UrtC PP4_RS24765 b117a585b76b98a6aec1edec16b68e82 359 PANTHER PTHR30482:SF4 117 356 4.3E-190 T 22-04-2016 IPR017778 ABC transporter, urea, permease protein, UrtC PP4_RS24765 b117a585b76b98a6aec1edec16b68e82 359 TIGRFAM TIGR03408 urea_trans_UrtC: urea ABC transporter, permease protein UrtC 44 352 2.6E-133 T 22-04-2016 IPR017778 ABC transporter, urea, permease protein, UrtC PP4_RS24765 b117a585b76b98a6aec1edec16b68e82 359 Pfam PF02653 Branched-chain amino acid transport system / permease component 52 341 4.7E-41 T 22-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 PP4_RS09090 16055b5d7a43d845814b3dd9764167fe 253 Pfam PF01925 Sulfite exporter TauE/SafE 9 246 4.8E-38 T 22-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 PP4_RS09090 16055b5d7a43d845814b3dd9764167fe 253 PANTHER PTHR30269:SF0 1 251 1.7E-68 T 22-04-2016 PP4_RS09090 16055b5d7a43d845814b3dd9764167fe 253 PANTHER PTHR30269 1 251 1.7E-68 T 22-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 PP4_RS21870 6808538019e22d474ae4f6a3e293d2b2 211 SUPERFAMILY SSF53850 1 205 7.38E-64 T 22-04-2016 PP4_RS21870 6808538019e22d474ae4f6a3e293d2b2 211 Gene3D G3DSA:3.40.190.10 1 113 3.0E-34 T 22-04-2016 PP4_RS21870 6808538019e22d474ae4f6a3e293d2b2 211 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 2 182 2.7E-53 T 22-04-2016 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 PP4_RS21870 6808538019e22d474ae4f6a3e293d2b2 211 Hamap MF_01018 ATP phosphoribosyltransferase [hisG]. 1 206 56.834 T 22-04-2016 IPR024893 ATP phosphoribosyltransferase HisG, short form GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 PP4_RS21870 6808538019e22d474ae4f6a3e293d2b2 211 Pfam PF01634 ATP phosphoribosyltransferase 51 202 3.6E-46 T 22-04-2016 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 PP4_RS21870 6808538019e22d474ae4f6a3e293d2b2 211 PANTHER PTHR21403:SF3 1 210 5.3E-95 T 22-04-2016 PP4_RS21870 6808538019e22d474ae4f6a3e293d2b2 211 PANTHER PTHR21403 1 210 5.3E-95 T 22-04-2016 IPR001348 ATP phosphoribosyltransferase HisG GO:0000105|GO:0003879 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 PP4_RS21870 6808538019e22d474ae4f6a3e293d2b2 211 Gene3D G3DSA:3.40.190.10 114 173 3.3E-27 T 22-04-2016 PP4_RS21870 6808538019e22d474ae4f6a3e293d2b2 211 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 141 162 - T 22-04-2016 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17|UniPathway: UPA00031 PP4_RS25995 33194643da05e8044943c7d523034e29 332 PANTHER PTHR30486:SF6 1 329 6.2E-138 T 22-04-2016 PP4_RS25995 33194643da05e8044943c7d523034e29 332 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 193 207 - T 22-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 PP4_RS25995 33194643da05e8044943c7d523034e29 332 TIGRFAM TIGR01420 pilT_fam: twitching motility protein 3 329 2.6E-124 T 22-04-2016 IPR006321 Pilus retraction protein PilT GO:0005524|GO:0006810 PP4_RS25995 33194643da05e8044943c7d523034e29 332 PANTHER PTHR30486 1 329 6.2E-138 T 22-04-2016 PP4_RS25995 33194643da05e8044943c7d523034e29 332 SUPERFAMILY SSF52540 5 329 1.14E-55 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25995 33194643da05e8044943c7d523034e29 332 Pfam PF00437 Type II/IV secretion system protein 114 271 5.8E-42 T 22-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 PP4_RS25995 33194643da05e8044943c7d523034e29 332 Gene3D G3DSA:3.40.50.300 103 329 2.2E-58 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25995 33194643da05e8044943c7d523034e29 332 SMART SM00382 122 247 5.4E-4 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS03780 31160a71ffaa2e555e59503579f5c914 260 PANTHER PTHR30136:SF8 3 256 2.4E-108 T 22-04-2016 PP4_RS03780 31160a71ffaa2e555e59503579f5c914 260 SUPERFAMILY SSF55781 81 256 9.16E-35 T 22-04-2016 IPR029016 GAF domain-like PP4_RS03780 31160a71ffaa2e555e59503579f5c914 260 Gene3D G3DSA:1.10.10.10 13 85 2.5E-16 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS03780 31160a71ffaa2e555e59503579f5c914 260 SUPERFAMILY SSF46785 15 88 2.99E-13 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS03780 31160a71ffaa2e555e59503579f5c914 260 SMART SM00346 15 105 1.7E-16 T 22-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 PP4_RS03780 31160a71ffaa2e555e59503579f5c914 260 Pfam PF01614 Bacterial transcriptional regulator 133 252 3.8E-12 T 22-04-2016 IPR014757 Transcription regulator IclR, C-terminal PP4_RS03780 31160a71ffaa2e555e59503579f5c914 260 PANTHER PTHR30136 3 256 2.4E-108 T 22-04-2016 PP4_RS03780 31160a71ffaa2e555e59503579f5c914 260 Gene3D G3DSA:3.30.450.40 86 258 6.8E-41 T 22-04-2016 IPR029016 GAF domain-like PP4_RS03780 31160a71ffaa2e555e59503579f5c914 260 Pfam PF09339 IclR helix-turn-helix domain 17 67 3.2E-12 T 22-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 PP4_RS18490 9a8c04dd5d2c5f3ea93f6699202a7015 158 PANTHER PTHR30173 1 157 1.6E-32 T 22-04-2016 PP4_RS18490 9a8c04dd5d2c5f3ea93f6699202a7015 158 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 3 157 1.9E-22 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS18490 9a8c04dd5d2c5f3ea93f6699202a7015 158 Gene3D G3DSA:1.10.1740.10 2 71 4.1E-18 T 22-04-2016 PP4_RS18490 9a8c04dd5d2c5f3ea93f6699202a7015 158 Pfam PF04542 Sigma-70 region 2 4 72 3.3E-20 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS18490 9a8c04dd5d2c5f3ea93f6699202a7015 158 Gene3D G3DSA:1.10.10.10 102 157 6.9E-15 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS18490 9a8c04dd5d2c5f3ea93f6699202a7015 158 Pfam PF08281 Sigma-70, region 4 102 153 4.5E-14 T 22-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS18490 9a8c04dd5d2c5f3ea93f6699202a7015 158 SUPERFAMILY SSF88659 101 157 1.96E-13 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS18490 9a8c04dd5d2c5f3ea93f6699202a7015 158 SUPERFAMILY SSF88946 2 79 1.84E-18 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS22295 656586b0c12f2c98b04d7df651c5afb6 113 PRINTS PR00355 Adrenodoxin signature 42 52 7.7E-10 T 22-04-2016 IPR001055 Adrenodoxin GO:0009055|GO:0051537 PP4_RS22295 656586b0c12f2c98b04d7df651c5afb6 113 PRINTS PR00355 Adrenodoxin signature 60 74 7.7E-10 T 22-04-2016 IPR001055 Adrenodoxin GO:0009055|GO:0051537 PP4_RS22295 656586b0c12f2c98b04d7df651c5afb6 113 PRINTS PR00355 Adrenodoxin signature 83 91 7.7E-10 T 22-04-2016 IPR001055 Adrenodoxin GO:0009055|GO:0051537 PP4_RS22295 656586b0c12f2c98b04d7df651c5afb6 113 SUPERFAMILY SSF54292 6 107 4.28E-30 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS22295 656586b0c12f2c98b04d7df651c5afb6 113 Gene3D G3DSA:3.10.20.30 1 101 2.3E-33 T 22-04-2016 IPR012675 Beta-grasp domain PP4_RS22295 656586b0c12f2c98b04d7df651c5afb6 113 TIGRFAM TIGR02007 fdx_isc: ferredoxin, 2Fe-2S type, ISC system 2 110 2.4E-58 T 22-04-2016 IPR011536 Ferredoxin 2Fe-2S type, proteobacteria GO:0009055|GO:0051537 PP4_RS22295 656586b0c12f2c98b04d7df651c5afb6 113 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 14 91 2.1E-11 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS22295 656586b0c12f2c98b04d7df651c5afb6 113 PANTHER PTHR23426 7 110 2.7E-39 T 22-04-2016 PP4_RS05830 71afbaf3558f87b072ade98cb1cf0180 354 Gene3D G3DSA:1.10.150.20 167 236 3.2E-26 T 22-04-2016 PP4_RS05830 71afbaf3558f87b072ade98cb1cf0180 354 Gene3D G3DSA:3.30.1490.100 240 351 3.9E-34 T 22-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS05830 71afbaf3558f87b072ade98cb1cf0180 354 Gene3D G3DSA:3.30.70.270 68 166 2.4E-36 T 22-04-2016 PP4_RS05830 71afbaf3558f87b072ade98cb1cf0180 354 PANTHER PTHR11076:SF32 3 340 2.3E-183 T 22-04-2016 PP4_RS05830 71afbaf3558f87b072ade98cb1cf0180 354 Pfam PF11798 IMS family HHH motif 168 199 5.5E-6 T 22-04-2016 IPR024728 DNA polymerase type-Y, HhH motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS05830 71afbaf3558f87b072ade98cb1cf0180 354 PANTHER PTHR11076 3 340 2.3E-183 T 22-04-2016 PP4_RS05830 71afbaf3558f87b072ade98cb1cf0180 354 SUPERFAMILY SSF100879 244 350 2.16E-21 T 22-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS05830 71afbaf3558f87b072ade98cb1cf0180 354 SUPERFAMILY SSF56672 3 236 6.58E-92 T 22-04-2016 PP4_RS05830 71afbaf3558f87b072ade98cb1cf0180 354 Pfam PF00817 impB/mucB/samB family 9 156 1.8E-52 T 22-04-2016 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS05830 71afbaf3558f87b072ade98cb1cf0180 354 Hamap MF_01113 DNA polymerase IV [dinB]. 3 350 36.999 T 22-04-2016 IPR022880 DNA polymerase IV GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS02000 096ec11a5c1186c3790aeb49431c42e6 390 Hamap MF_01693 8-amino-7-oxononanoate synthase [bioF]. 1 382 52.085 T 22-04-2016 IPR022834 8-amino-7-oxononanoate synthase, Proteobacteria GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147|UniPathway: UPA00078 PP4_RS02000 096ec11a5c1186c3790aeb49431c42e6 390 PANTHER PTHR13693 5 386 5.1E-180 T 22-04-2016 PP4_RS02000 096ec11a5c1186c3790aeb49431c42e6 390 TIGRFAM TIGR00858 bioF: 8-amino-7-oxononanoate synthase 17 378 9.7E-151 T 22-04-2016 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type GO:0008710|GO:0009102 KEGG: 00780+2.3.1.47|MetaCyc: PWY-6519|MetaCyc: PWY-6578|MetaCyc: PWY-7147|UniPathway: UPA00078 PP4_RS02000 096ec11a5c1186c3790aeb49431c42e6 390 PANTHER PTHR13693:SF53 5 386 5.1E-180 T 22-04-2016 PP4_RS02000 096ec11a5c1186c3790aeb49431c42e6 390 Gene3D G3DSA:3.40.640.10 55 269 2.9E-82 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS02000 096ec11a5c1186c3790aeb49431c42e6 390 SUPERFAMILY SSF53383 5 384 1.73E-112 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS02000 096ec11a5c1186c3790aeb49431c42e6 390 Gene3D G3DSA:3.90.1150.10 270 380 7.2E-35 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS02000 096ec11a5c1186c3790aeb49431c42e6 390 Pfam PF00155 Aminotransferase class I and II 40 378 2.4E-57 T 22-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PP4_RS24315 c772f25d5a530eb704d13e130adbd854 295 Pfam PF13557 Putative MetA-pathway of phenol degradation 73 291 9.6E-21 T 22-04-2016 IPR025737 MetA-pathway of phenol degradation, putative PP4_RS09595 84743b2b38aaccd82a66cb6c2a1dd6a9 432 PANTHER PTHR13847:SF194 1 415 1.8E-257 T 22-04-2016 PP4_RS09595 84743b2b38aaccd82a66cb6c2a1dd6a9 432 Gene3D G3DSA:3.50.50.60 346 404 1.1E-41 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS09595 84743b2b38aaccd82a66cb6c2a1dd6a9 432 Gene3D G3DSA:3.50.50.60 174 253 1.1E-41 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS09595 84743b2b38aaccd82a66cb6c2a1dd6a9 432 Gene3D G3DSA:3.50.50.60 20 120 1.1E-41 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS09595 84743b2b38aaccd82a66cb6c2a1dd6a9 432 SUPERFAMILY SSF51905 29 254 1.2E-36 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS09595 84743b2b38aaccd82a66cb6c2a1dd6a9 432 SUPERFAMILY SSF51905 346 404 1.2E-36 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS09595 84743b2b38aaccd82a66cb6c2a1dd6a9 432 PANTHER PTHR13847 1 415 1.8E-257 T 22-04-2016 PP4_RS09595 84743b2b38aaccd82a66cb6c2a1dd6a9 432 Pfam PF01266 FAD dependent oxidoreductase 30 384 1.4E-35 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PP4_RS09595 84743b2b38aaccd82a66cb6c2a1dd6a9 432 PRINTS PR00757 Flavin-containing amine oxidase signature 30 49 1.3E-5 T 22-04-2016 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 PP4_RS09595 84743b2b38aaccd82a66cb6c2a1dd6a9 432 PRINTS PR00757 Flavin-containing amine oxidase signature 144 166 1.3E-5 T 22-04-2016 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 PP4_RS03920 16c1f73d6c1d870f2103193aa761ad0c 524 PANTHER PTHR34219:SF4 1 509 2.8E-174 T 22-04-2016 PP4_RS03920 16c1f73d6c1d870f2103193aa761ad0c 524 PANTHER PTHR34219 1 509 2.8E-174 T 22-04-2016 PP4_RS03920 16c1f73d6c1d870f2103193aa761ad0c 524 Pfam PF03929 PepSY-associated TM region 10 363 5.1E-55 T 22-04-2016 IPR005625 PepSY-associated TM protein PP4_RS10510 6e5a1b305671725e94e864f6ac99af76 241 SMART SM00345 16 75 5.8E-16 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS10510 6e5a1b305671725e94e864f6ac99af76 241 Gene3D G3DSA:1.20.120.530 95 239 3.3E-24 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PP4_RS10510 6e5a1b305671725e94e864f6ac99af76 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 2.6E-6 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS10510 6e5a1b305671725e94e864f6ac99af76 241 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 2.6E-6 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS10510 6e5a1b305671725e94e864f6ac99af76 241 PANTHER PTHR11751 14 116 1.9E-23 T 22-04-2016 PP4_RS10510 6e5a1b305671725e94e864f6ac99af76 241 SMART SM00895 99 228 2.8E-19 T 22-04-2016 IPR011711 GntR, C-terminal PP4_RS10510 6e5a1b305671725e94e864f6ac99af76 241 Gene3D G3DSA:1.10.10.10 8 81 6.1E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS10510 6e5a1b305671725e94e864f6ac99af76 241 SUPERFAMILY SSF48008 97 236 2.56E-22 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PP4_RS10510 6e5a1b305671725e94e864f6ac99af76 241 Pfam PF07729 FCD domain 99 227 3.0E-22 T 22-04-2016 IPR011711 GntR, C-terminal PP4_RS10510 6e5a1b305671725e94e864f6ac99af76 241 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 75 1.3E-17 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS10510 6e5a1b305671725e94e864f6ac99af76 241 SUPERFAMILY SSF46785 8 79 1.58E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS07490 2fb06e9bd1789e78fa2310ca5dda1f9a 424 PANTHER PTHR12227:SF0 6 423 2.8E-146 T 22-04-2016 PP4_RS07490 2fb06e9bd1789e78fa2310ca5dda1f9a 424 Gene3D G3DSA:3.40.50.10180 9 240 1.5E-99 T 22-04-2016 PP4_RS07490 2fb06e9bd1789e78fa2310ca5dda1f9a 424 Gene3D G3DSA:3.40.1480.10 241 420 4.8E-66 T 22-04-2016 IPR007835 MOFRL domain PP4_RS07490 2fb06e9bd1789e78fa2310ca5dda1f9a 424 Pfam PF05161 MOFRL family 307 412 4.0E-34 T 22-04-2016 IPR007835 MOFRL domain PP4_RS07490 2fb06e9bd1789e78fa2310ca5dda1f9a 424 PANTHER PTHR12227 6 423 2.8E-146 T 22-04-2016 PP4_RS07490 2fb06e9bd1789e78fa2310ca5dda1f9a 424 SUPERFAMILY SSF82544 4 418 5.49E-148 T 22-04-2016 PP4_RS07490 2fb06e9bd1789e78fa2310ca5dda1f9a 424 Pfam PF13660 Domain of unknown function (DUF4147) 9 229 1.8E-81 T 22-04-2016 IPR025286 MOFRL-associated domain PP4_RS10390 8df1724f6b661c83317ba971e088c806 254 Gene3D G3DSA:1.10.10.10 6 76 8.6E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS10390 8df1724f6b661c83317ba971e088c806 254 Pfam PF07729 FCD domain 97 227 2.4E-20 T 22-04-2016 IPR011711 GntR, C-terminal PP4_RS10390 8df1724f6b661c83317ba971e088c806 254 SUPERFAMILY SSF46785 6 76 2.17E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS10390 8df1724f6b661c83317ba971e088c806 254 Gene3D G3DSA:1.20.120.530 93 239 2.7E-26 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PP4_RS10390 8df1724f6b661c83317ba971e088c806 254 SMART SM00345 13 72 7.6E-12 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS10390 8df1724f6b661c83317ba971e088c806 254 SUPERFAMILY SSF48008 94 235 1.18E-22 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PP4_RS10390 8df1724f6b661c83317ba971e088c806 254 PANTHER PTHR11751:SF277 91 113 9.6E-44 T 22-04-2016 PP4_RS10390 8df1724f6b661c83317ba971e088c806 254 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 72 1.1E-15 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS10390 8df1724f6b661c83317ba971e088c806 254 SMART SM00895 97 228 5.0E-19 T 22-04-2016 IPR011711 GntR, C-terminal PP4_RS10390 8df1724f6b661c83317ba971e088c806 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 62 4.6E-7 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS10390 8df1724f6b661c83317ba971e088c806 254 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 32 46 4.6E-7 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS10390 8df1724f6b661c83317ba971e088c806 254 PANTHER PTHR11751 7 75 9.6E-44 T 22-04-2016 PP4_RS10390 8df1724f6b661c83317ba971e088c806 254 PANTHER PTHR11751 91 113 9.6E-44 T 22-04-2016 PP4_RS10390 8df1724f6b661c83317ba971e088c806 254 PANTHER PTHR11751:SF277 7 75 9.6E-44 T 22-04-2016 PP4_RS01265 093ed7d9dc15fb33b5eadce2c13d686d 310 Gene3D G3DSA:2.160.10.10 181 301 4.6E-25 T 22-04-2016 PP4_RS01265 093ed7d9dc15fb33b5eadce2c13d686d 310 Gene3D G3DSA:1.10.3130.10 41 180 1.9E-42 T 22-04-2016 PP4_RS01265 093ed7d9dc15fb33b5eadce2c13d686d 310 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 254 288 7.1E-6 T 22-04-2016 IPR001451 Hexapeptide repeat PP4_RS01265 093ed7d9dc15fb33b5eadce2c13d686d 310 PANTHER PTHR23416:SF65 57 301 1.3E-88 T 22-04-2016 PP4_RS01265 093ed7d9dc15fb33b5eadce2c13d686d 310 SUPERFAMILY SSF51161 120 295 3.05E-44 T 22-04-2016 IPR011004 Trimeric LpxA-like PP4_RS01265 093ed7d9dc15fb33b5eadce2c13d686d 310 PANTHER PTHR23416 57 301 1.3E-88 T 22-04-2016 PP4_RS07760 50c15f6f2045001240fe2e94ea2fb54d 474 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 12 443 2.4E-113 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS07760 50c15f6f2045001240fe2e94ea2fb54d 474 PANTHER PTHR10422 7 462 8.6E-304 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS07760 50c15f6f2045001240fe2e94ea2fb54d 474 Gene3D G3DSA:1.20.210.10 7 462 7.6E-72 T 22-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS07760 50c15f6f2045001240fe2e94ea2fb54d 474 SUPERFAMILY SSF81442 8 463 1.44E-125 T 22-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS07760 50c15f6f2045001240fe2e94ea2fb54d 474 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 203 258 - T 22-04-2016 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS07760 50c15f6f2045001240fe2e94ea2fb54d 474 PANTHER PTHR10422:SF21 7 462 8.6E-304 T 22-04-2016 PP4_RS07760 50c15f6f2045001240fe2e94ea2fb54d 474 TIGRFAM TIGR00780 ccoN: cytochrome c oxidase, cbb3-type, subunit I 8 461 1.6E-228 T 22-04-2016 IPR004677 Cytochrome c oxidase cbb3-type, subunit I GO:0004129|GO:0045278|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS01565 65402e6ec286ab24d37b5ec9fe31b800 257 SUPERFAMILY SSF52540 8 252 3.87E-75 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS01565 65402e6ec286ab24d37b5ec9fe31b800 257 Gene3D G3DSA:3.40.50.300 6 254 1.8E-82 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS01565 65402e6ec286ab24d37b5ec9fe31b800 257 PIRSF PIRSF039085 4 257 9.6E-116 T 22-04-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 PP4_RS01565 65402e6ec286ab24d37b5ec9fe31b800 257 Pfam PF00005 ABC transporter 23 182 1.3E-33 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS01565 65402e6ec286ab24d37b5ec9fe31b800 257 SMART SM00382 32 230 1.1E-15 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS01565 65402e6ec286ab24d37b5ec9fe31b800 257 PANTHER PTHR24220 9 256 2.7E-163 T 22-04-2016 PP4_RS01565 65402e6ec286ab24d37b5ec9fe31b800 257 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS01565 65402e6ec286ab24d37b5ec9fe31b800 257 PANTHER PTHR24220:SF472 9 256 2.7E-163 T 22-04-2016 PP4_RS26100 ef0e6542cc97fa08b93fb56eb75c15f0 205 PANTHER PTHR18895:SF60 11 199 4.2E-45 T 22-04-2016 PP4_RS26100 ef0e6542cc97fa08b93fb56eb75c15f0 205 TIGRFAM TIGR00095 TIGR00095: 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 16 199 3.4E-57 T 22-04-2016 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PP4_RS26100 ef0e6542cc97fa08b93fb56eb75c15f0 205 SUPERFAMILY SSF53335 21 199 6.81E-51 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS26100 ef0e6542cc97fa08b93fb56eb75c15f0 205 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 134 140 - T 22-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 PP4_RS26100 ef0e6542cc97fa08b93fb56eb75c15f0 205 Pfam PF03602 Conserved hypothetical protein 95 21 198 9.0E-61 T 22-04-2016 PP4_RS26100 ef0e6542cc97fa08b93fb56eb75c15f0 205 PANTHER PTHR18895 11 199 4.2E-45 T 22-04-2016 PP4_RS26100 ef0e6542cc97fa08b93fb56eb75c15f0 205 PIRSF PIRSF004553 20 200 7.5E-52 T 22-04-2016 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PP4_RS26100 ef0e6542cc97fa08b93fb56eb75c15f0 205 Gene3D G3DSA:3.40.50.150 15 199 1.2E-64 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS02220 8c1820c23c80cbcf175ac0bc95451352 339 Gene3D G3DSA:3.30.200.20 26 104 9.5E-29 T 22-04-2016 PP4_RS02220 8c1820c23c80cbcf175ac0bc95451352 339 Gene3D G3DSA:3.90.1200.10 105 333 1.5E-69 T 22-04-2016 PP4_RS02220 8c1820c23c80cbcf175ac0bc95451352 339 PANTHER PTHR33540:SF1 24 338 5.7E-135 T 22-04-2016 PP4_RS02220 8c1820c23c80cbcf175ac0bc95451352 339 Pfam PF01636 Phosphotransferase enzyme family 36 258 3.5E-32 T 22-04-2016 IPR002575 Aminoglycoside phosphotransferase PP4_RS02220 8c1820c23c80cbcf175ac0bc95451352 339 SUPERFAMILY SSF56112 31 317 2.65E-53 T 22-04-2016 IPR011009 Protein kinase-like domain PP4_RS02220 8c1820c23c80cbcf175ac0bc95451352 339 PANTHER PTHR33540 24 338 5.7E-135 T 22-04-2016 PP4_RS02180 4085615b5ef2eef823c479ee5fe1af0b 640 SUPERFAMILY SSF52540 75 363 4.06E-15 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS02180 4085615b5ef2eef823c479ee5fe1af0b 640 PANTHER PTHR30267:SF2 1 640 4.5E-285 T 22-04-2016 PP4_RS02180 4085615b5ef2eef823c479ee5fe1af0b 640 Gene3D G3DSA:3.40.50.300 239 325 1.8E-7 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS02180 4085615b5ef2eef823c479ee5fe1af0b 640 Gene3D G3DSA:3.40.50.300 75 154 1.8E-7 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS02180 4085615b5ef2eef823c479ee5fe1af0b 640 Pfam PF06798 PrkA serine protein kinase C-terminal domain 379 632 1.5E-74 T 22-04-2016 IPR010650 PrkA C-terminal domain PP4_RS02180 4085615b5ef2eef823c479ee5fe1af0b 640 SMART SM00763 19 376 4.5E-215 T 22-04-2016 IPR013153 PrkA AAA domain PP4_RS02180 4085615b5ef2eef823c479ee5fe1af0b 640 Pfam PF08298 PrkA AAA domain 20 376 5.4E-181 T 22-04-2016 IPR013153 PrkA AAA domain PP4_RS02180 4085615b5ef2eef823c479ee5fe1af0b 640 PANTHER PTHR30267 1 640 4.5E-285 T 22-04-2016 PP4_RS02180 4085615b5ef2eef823c479ee5fe1af0b 640 PIRSF PIRSF000549 1 640 1.2E-285 T 22-04-2016 IPR016230 Serine-protein kinase, PrkA GO:0004672 PP4_RS12295 d011a6a4708b9dff19f8b430c94b8e6b 352 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 138 345 2.0E-36 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS12295 d011a6a4708b9dff19f8b430c94b8e6b 352 PANTHER PTHR30465:SF66 1 347 2.4E-193 T 22-04-2016 PP4_RS12295 d011a6a4708b9dff19f8b430c94b8e6b 352 Gene3D G3DSA:1.10.3720.10 113 338 1.2E-16 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS12295 d011a6a4708b9dff19f8b430c94b8e6b 352 SUPERFAMILY SSF161098 114 329 1.44E-16 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS12295 d011a6a4708b9dff19f8b430c94b8e6b 352 PANTHER PTHR30465 1 347 2.4E-193 T 22-04-2016 PP4_RS10835 668e0d1e8751ad133d041055f7513d5a 353 Pfam PF03601 Conserved hypothetical protein 698 22 329 9.5E-89 T 22-04-2016 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 PP4_RS10835 668e0d1e8751ad133d041055f7513d5a 353 PANTHER PTHR30106 22 353 2.2E-96 T 22-04-2016 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 PP4_RS10835 668e0d1e8751ad133d041055f7513d5a 353 TIGRFAM TIGR00698 TIGR00698: conserved hypothetical protein 22 352 6.2E-73 T 22-04-2016 IPR004630 Uncharacterised protein family UPF0324, bacteria GO:0016021 PP4_RS10835 668e0d1e8751ad133d041055f7513d5a 353 PANTHER PTHR30106:SF2 22 353 2.2E-96 T 22-04-2016 PP4_RS23965 425e23e8a864f18b294664c9f65ed5bb 201 SMART SM00479 3 170 1.3E-37 T 22-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III PP4_RS23965 425e23e8a864f18b294664c9f65ed5bb 201 PANTHER PTHR30231 2 174 2.5E-38 T 22-04-2016 PP4_RS23965 425e23e8a864f18b294664c9f65ed5bb 201 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 5 172 7.0E-22 T 22-04-2016 IPR006054 DNA polymerase III, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS23965 425e23e8a864f18b294664c9f65ed5bb 201 Gene3D G3DSA:3.30.420.10 3 170 1.8E-48 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PP4_RS23965 425e23e8a864f18b294664c9f65ed5bb 201 Pfam PF00929 Exonuclease 6 161 2.2E-26 T 22-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III PP4_RS23965 425e23e8a864f18b294664c9f65ed5bb 201 SUPERFAMILY SSF53098 3 170 4.45E-47 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PP4_RS26710 dfbfe4a8b4df855b6a3d019070b4163f 415 PRINTS PR01181 Diaminopimelate decarboxylase signature 75 92 3.5E-30 T 22-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PP4_RS26710 dfbfe4a8b4df855b6a3d019070b4163f 415 PRINTS PR01181 Diaminopimelate decarboxylase signature 164 173 3.5E-30 T 22-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PP4_RS26710 dfbfe4a8b4df855b6a3d019070b4163f 415 PRINTS PR01181 Diaminopimelate decarboxylase signature 378 400 3.5E-30 T 22-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PP4_RS26710 dfbfe4a8b4df855b6a3d019070b4163f 415 PRINTS PR01181 Diaminopimelate decarboxylase signature 298 316 3.5E-30 T 22-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PP4_RS26710 dfbfe4a8b4df855b6a3d019070b4163f 415 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 285 387 8.9E-17 T 22-04-2016 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Reactome: REACT_13 PP4_RS26710 dfbfe4a8b4df855b6a3d019070b4163f 415 SUPERFAMILY SSF50621 254 411 2.09E-52 T 22-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 PP4_RS26710 dfbfe4a8b4df855b6a3d019070b4163f 415 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 6 410 8.8E-159 T 22-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PP4_RS26710 dfbfe4a8b4df855b6a3d019070b4163f 415 PANTHER PTHR11482:SF5 1 414 1.8E-176 T 22-04-2016 PP4_RS26710 dfbfe4a8b4df855b6a3d019070b4163f 415 Gene3D G3DSA:2.40.37.10 267 412 8.2E-49 T 22-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 PP4_RS26710 dfbfe4a8b4df855b6a3d019070b4163f 415 SUPERFAMILY SSF51419 26 282 4.58E-82 T 22-04-2016 IPR029066 PLP-binding barrel PP4_RS26710 dfbfe4a8b4df855b6a3d019070b4163f 415 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 225 241 - T 22-04-2016 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site Reactome: REACT_13 PP4_RS26710 dfbfe4a8b4df855b6a3d019070b4163f 415 PANTHER PTHR11482 1 414 1.8E-176 T 22-04-2016 PP4_RS26710 dfbfe4a8b4df855b6a3d019070b4163f 415 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 34 281 3.5E-77 T 22-04-2016 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Reactome: REACT_13 PP4_RS26710 dfbfe4a8b4df855b6a3d019070b4163f 415 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 57 75 4.0E-27 T 22-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 PP4_RS26710 dfbfe4a8b4df855b6a3d019070b4163f 415 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 368 381 4.0E-27 T 22-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 PP4_RS26710 dfbfe4a8b4df855b6a3d019070b4163f 415 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 77 89 4.0E-27 T 22-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 PP4_RS26710 dfbfe4a8b4df855b6a3d019070b4163f 415 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 190 203 4.0E-27 T 22-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 PP4_RS26710 dfbfe4a8b4df855b6a3d019070b4163f 415 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 270 289 4.0E-27 T 22-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 PP4_RS26710 dfbfe4a8b4df855b6a3d019070b4163f 415 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 57 75 - T 22-04-2016 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Reactome: REACT_13 PP4_RS26710 dfbfe4a8b4df855b6a3d019070b4163f 415 Gene3D G3DSA:3.20.20.10 36 266 5.9E-87 T 22-04-2016 IPR029066 PLP-binding barrel PP4_RS26710 dfbfe4a8b4df855b6a3d019070b4163f 415 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 15 411 42.077 T 22-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PP4_RS01905 0679b547298281cf536d52d7cff0a474 244 Gene3D G3DSA:3.90.1200.10 158 229 7.0E-5 T 22-04-2016 PP4_RS01905 0679b547298281cf536d52d7cff0a474 244 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 38 180 1.2E-18 T 22-04-2016 IPR010440 Lipopolysaccharide kinase GO:0005524|GO:0016020|GO:0016773 PP4_RS01905 0679b547298281cf536d52d7cff0a474 244 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 154 166 - T 22-04-2016 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 PP4_RS01905 0679b547298281cf536d52d7cff0a474 244 Gene3D G3DSA:1.10.510.10 114 157 9.2E-7 T 22-04-2016 PP4_RS01905 0679b547298281cf536d52d7cff0a474 244 SUPERFAMILY SSF56112 35 199 4.45E-16 T 22-04-2016 IPR011009 Protein kinase-like domain PP4_RS25785 243fc82a73dfe0017346ee02c85a446b 153 PANTHER PTHR12029 1 152 8.6E-73 T 22-04-2016 PP4_RS25785 243fc82a73dfe0017346ee02c85a446b 153 Gene3D G3DSA:3.40.1280.10 1 152 2.2E-67 T 22-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PP4_RS25785 243fc82a73dfe0017346ee02c85a446b 153 SUPERFAMILY SSF75217 1 152 4.58E-46 T 22-04-2016 IPR029028 Alpha/beta knot methyltransferases PP4_RS25785 243fc82a73dfe0017346ee02c85a446b 153 Hamap MF_01885 tRNA (cytidine(34)-2'-O)-methyltransferase [trmL]. 2 151 33.8 T 22-04-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 PP4_RS25785 243fc82a73dfe0017346ee02c85a446b 153 PIRSF PIRSF029256 1 153 2.8E-67 T 22-04-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 PP4_RS25785 243fc82a73dfe0017346ee02c85a446b 153 Pfam PF00588 SpoU rRNA Methylase family 2 142 4.6E-32 T 22-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 PP4_RS25785 243fc82a73dfe0017346ee02c85a446b 153 PANTHER PTHR12029:SF31 1 152 8.6E-73 T 22-04-2016 PP4_RS25785 243fc82a73dfe0017346ee02c85a446b 153 TIGRFAM TIGR00185 tRNA_yibK_trmL: tRNA (cytidine(34)-2'-O)-methyltransferase 1 152 3.2E-58 T 22-04-2016 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase GO:0001510|GO:0008168 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 PP4_RS02625 47767b8466955e00de48af6306903e37 206 Pfam PF01479 S4 domain 97 143 8.9E-21 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 PP4_RS02625 47767b8466955e00de48af6306903e37 206 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 95 8.0E-29 T 22-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 PP4_RS02625 47767b8466955e00de48af6306903e37 206 Gene3D G3DSA:3.10.290.10 99 198 3.1E-33 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 PP4_RS02625 47767b8466955e00de48af6306903e37 206 PANTHER PTHR11831:SF4 1 206 8.4E-90 T 22-04-2016 PP4_RS02625 47767b8466955e00de48af6306903e37 206 SMART SM00363 96 160 2.1E-18 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 PP4_RS02625 47767b8466955e00de48af6306903e37 206 SMART SM01390 3 95 3.0E-47 T 22-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 PP4_RS02625 47767b8466955e00de48af6306903e37 206 PANTHER PTHR11831 1 206 8.4E-90 T 22-04-2016 IPR022801 Ribosomal protein S4/S9 PP4_RS02625 47767b8466955e00de48af6306903e37 206 ProSitePatterns PS00632 Ribosomal protein S4 signature. 94 118 - T 22-04-2016 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 PP4_RS02625 47767b8466955e00de48af6306903e37 206 SUPERFAMILY SSF55174 3 206 2.09E-69 T 22-04-2016 PP4_RS02625 47767b8466955e00de48af6306903e37 206 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 206 6.8E-78 T 22-04-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 PP4_RS02625 47767b8466955e00de48af6306903e37 206 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 206 34.41 T 22-04-2016 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 PP4_RS02625 47767b8466955e00de48af6306903e37 206 Gene3D G3DSA:1.10.1050.10 1 98 1.2E-40 T 22-04-2016 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 PP4_RS06620 5c218e2fbb14f113cf5a078e3641c5f2 316 PANTHER PTHR11358 1 313 1.2E-208 T 22-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 PP4_RS06620 5c218e2fbb14f113cf5a078e3641c5f2 316 PIRSF PIRSF036979 15 313 1.0E-102 T 22-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 PP4_RS06620 5c218e2fbb14f113cf5a078e3641c5f2 316 Gene3D G3DSA:3.40.800.10 8 310 5.8E-128 T 22-04-2016 IPR023696 Ureohydrolase domain PP4_RS06620 5c218e2fbb14f113cf5a078e3641c5f2 316 PRINTS PR00116 Arginase signature 122 137 4.3E-13 T 22-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 PP4_RS06620 5c218e2fbb14f113cf5a078e3641c5f2 316 PRINTS PR00116 Arginase signature 235 264 4.3E-13 T 22-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 PP4_RS06620 5c218e2fbb14f113cf5a078e3641c5f2 316 SUPERFAMILY SSF52768 14 309 1.98E-101 T 22-04-2016 PP4_RS06620 5c218e2fbb14f113cf5a078e3641c5f2 316 TIGRFAM TIGR01230 agmatinase: agmatinase 36 308 1.1E-61 T 22-04-2016 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|UniPathway: UPA00534 PP4_RS06620 5c218e2fbb14f113cf5a078e3641c5f2 316 ProSitePatterns PS01053 Arginase family signature. 238 259 - T 22-04-2016 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 Reactome: REACT_13 PP4_RS06620 5c218e2fbb14f113cf5a078e3641c5f2 316 Pfam PF00491 Arginase family 36 307 5.1E-90 T 22-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 PP4_RS06620 5c218e2fbb14f113cf5a078e3641c5f2 316 PANTHER PTHR11358:SF27 1 313 1.2E-208 T 22-04-2016 PP4_RS20335 ce477c0359e1b15e9ce4b4a4c5b9d10f 521 PANTHER PTHR16631:SF5 42 325 1.3E-79 T 22-04-2016 PP4_RS20335 ce477c0359e1b15e9ce4b4a4c5b9d10f 521 Gene3D G3DSA:3.20.20.80 73 312 3.6E-26 T 22-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PP4_RS20335 ce477c0359e1b15e9ce4b4a4c5b9d10f 521 PANTHER PTHR16631 42 325 1.3E-79 T 22-04-2016 PP4_RS20335 ce477c0359e1b15e9ce4b4a4c5b9d10f 521 SUPERFAMILY SSF51445 50 312 7.78E-52 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily PP4_RS07305 444ac846b344793bb6fb253316c1ecc9 747 Gene3D G3DSA:2.40.50.180 632 694 8.1E-15 T 22-04-2016 PP4_RS07305 444ac846b344793bb6fb253316c1ecc9 747 SUPERFAMILY SSF47384 361 421 4.32E-14 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS07305 444ac846b344793bb6fb253316c1ecc9 747 PRINTS PR00344 Bacterial sensor protein C-terminal signature 510 524 2.3E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS07305 444ac846b344793bb6fb253316c1ecc9 747 PRINTS PR00344 Bacterial sensor protein C-terminal signature 592 605 2.3E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS07305 444ac846b344793bb6fb253316c1ecc9 747 PRINTS PR00344 Bacterial sensor protein C-terminal signature 568 586 2.3E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS07305 444ac846b344793bb6fb253316c1ecc9 747 PRINTS PR00344 Bacterial sensor protein C-terminal signature 552 562 2.3E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS07305 444ac846b344793bb6fb253316c1ecc9 747 Pfam PF01584 CheW-like domain 614 741 7.2E-25 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS07305 444ac846b344793bb6fb253316c1ecc9 747 SMART SM00073 6 103 2.3E-19 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS07305 444ac846b344793bb6fb253316c1ecc9 747 PANTHER PTHR22617:SF6 194 746 3.0E-269 T 22-04-2016 PP4_RS07305 444ac846b344793bb6fb253316c1ecc9 747 PANTHER PTHR22617:SF6 1 151 3.0E-269 T 22-04-2016 PP4_RS07305 444ac846b344793bb6fb253316c1ecc9 747 SUPERFAMILY SSF50341 607 739 1.7E-32 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS07305 444ac846b344793bb6fb253316c1ecc9 747 Pfam PF01627 Hpt domain 8 100 1.5E-18 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS07305 444ac846b344793bb6fb253316c1ecc9 747 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 468 607 7.8E-19 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS07305 444ac846b344793bb6fb253316c1ecc9 747 SMART SM00387 465 608 1.9E-22 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS07305 444ac846b344793bb6fb253316c1ecc9 747 Gene3D G3DSA:3.30.565.10 422 607 2.0E-37 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS07305 444ac846b344793bb6fb253316c1ecc9 747 Pfam PF02895 Signal transducing histidine kinase, homodimeric domain 361 420 2.8E-13 T 22-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 PP4_RS07305 444ac846b344793bb6fb253316c1ecc9 747 SUPERFAMILY SSF47226 6 128 1.19E-31 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS07305 444ac846b344793bb6fb253316c1ecc9 747 Gene3D G3DSA:2.30.30.40 608 629 1.1E-23 T 22-04-2016 PP4_RS07305 444ac846b344793bb6fb253316c1ecc9 747 Gene3D G3DSA:2.30.30.40 695 738 1.1E-23 T 22-04-2016 PP4_RS07305 444ac846b344793bb6fb253316c1ecc9 747 Gene3D G3DSA:1.20.120.160 6 144 6.6E-45 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS07305 444ac846b344793bb6fb253316c1ecc9 747 SUPERFAMILY SSF55874 423 606 4.85E-39 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS07305 444ac846b344793bb6fb253316c1ecc9 747 SMART SM01231 360 420 1.3E-18 T 22-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 PP4_RS07305 444ac846b344793bb6fb253316c1ecc9 747 PANTHER PTHR22617 194 746 3.0E-269 T 22-04-2016 PP4_RS07305 444ac846b344793bb6fb253316c1ecc9 747 PANTHER PTHR22617 1 151 3.0E-269 T 22-04-2016 PP4_RS07305 444ac846b344793bb6fb253316c1ecc9 747 Gene3D G3DSA:1.10.287.560 360 421 3.4E-19 T 22-04-2016 IPR004105 Histidine kinase CheA-like, homodimeric domain GO:0000155|GO:0000160|GO:0004673|GO:0005737|GO:0006935 PP4_RS07305 444ac846b344793bb6fb253316c1ecc9 747 SMART SM00260 600 739 5.3E-43 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS20480 9848bf6b98427be6f222bb7f252649eb 850 PANTHER PTHR11493 423 839 2.7E-281 T 22-04-2016 PP4_RS20480 9848bf6b98427be6f222bb7f252649eb 850 PANTHER PTHR11493 8 261 2.7E-281 T 22-04-2016 PP4_RS20480 9848bf6b98427be6f222bb7f252649eb 850 Pfam PF04324 BFD-like [2Fe-2S] binding domain 427 475 3.8E-9 T 22-04-2016 IPR007419 BFD-like [2Fe-2S]-binding domain PP4_RS20480 9848bf6b98427be6f222bb7f252649eb 850 SUPERFAMILY SSF55124 518 646 2.45E-23 T 22-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PP4_RS20480 9848bf6b98427be6f222bb7f252649eb 850 SUPERFAMILY SSF51905 11 196 3.48E-37 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS20480 9848bf6b98427be6f222bb7f252649eb 850 Gene3D G3DSA:3.30.413.10 637 774 4.1E-34 T 22-04-2016 PP4_RS20480 9848bf6b98427be6f222bb7f252649eb 850 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 565 627 3.7E-10 T 22-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PP4_RS20480 9848bf6b98427be6f222bb7f252649eb 850 SUPERFAMILY SSF56014 638 813 3.93E-51 T 22-04-2016 PP4_RS20480 9848bf6b98427be6f222bb7f252649eb 850 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 637 760 1.2E-18 T 22-04-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PP4_RS20480 9848bf6b98427be6f222bb7f252649eb 850 PRINTS PR00397 Sirohaem Fe-binding site signature 641 659 6.5E-7 T 22-04-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PP4_RS20480 9848bf6b98427be6f222bb7f252649eb 850 PRINTS PR00397 Sirohaem Fe-binding site signature 684 702 6.5E-7 T 22-04-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PP4_RS20480 9848bf6b98427be6f222bb7f252649eb 850 ProSitePatterns PS00365 Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 684 700 - T 22-04-2016 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PP4_RS20480 9848bf6b98427be6f222bb7f252649eb 850 Gene3D G3DSA:3.50.50.60 9 112 7.1E-24 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS20480 9848bf6b98427be6f222bb7f252649eb 850 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 12 34 2.2E-10 T 22-04-2016 PP4_RS20480 9848bf6b98427be6f222bb7f252649eb 850 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 153 178 2.2E-10 T 22-04-2016 PP4_RS20480 9848bf6b98427be6f222bb7f252649eb 850 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 240 254 2.2E-10 T 22-04-2016 PP4_RS20480 9848bf6b98427be6f222bb7f252649eb 850 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 281 288 2.2E-10 T 22-04-2016 PP4_RS20480 9848bf6b98427be6f222bb7f252649eb 850 Gene3D G3DSA:3.50.50.60 113 310 2.7E-41 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS20480 9848bf6b98427be6f222bb7f252649eb 850 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 12 288 5.8E-48 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS20480 9848bf6b98427be6f222bb7f252649eb 850 PANTHER PTHR11493:SF52 423 839 2.7E-281 T 22-04-2016 PP4_RS20480 9848bf6b98427be6f222bb7f252649eb 850 PANTHER PTHR11493:SF52 8 261 2.7E-281 T 22-04-2016 PP4_RS20480 9848bf6b98427be6f222bb7f252649eb 850 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 153 171 4.7E-15 T 22-04-2016 PP4_RS20480 9848bf6b98427be6f222bb7f252649eb 850 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 108 126 4.7E-15 T 22-04-2016 PP4_RS20480 9848bf6b98427be6f222bb7f252649eb 850 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 288 4.7E-15 T 22-04-2016 PP4_RS20480 9848bf6b98427be6f222bb7f252649eb 850 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 13 32 4.7E-15 T 22-04-2016 PP4_RS20480 9848bf6b98427be6f222bb7f252649eb 850 TIGRFAM TIGR02374 nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit 13 806 0.0 T 22-04-2016 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB GO:0008942|GO:0042128|GO:0050660|GO:0050661|GO:0055114 UniPathway: UPA00653 PP4_RS20480 9848bf6b98427be6f222bb7f252649eb 850 SUPERFAMILY SSF51905 155 314 1.05E-25 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS20480 9848bf6b98427be6f222bb7f252649eb 850 PIRSF PIRSF037149 3 840 0.0 T 22-04-2016 IPR017121 Nitrite reductase [NAD(P)H], large subunit GO:0042128 PP4_RS15155 c5ea89cf9c32c8f8fc5c48133e485a07 916 Gene3D G3DSA:3.40.50.300 189 300 1.5E-11 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS15155 c5ea89cf9c32c8f8fc5c48133e485a07 916 Pfam PF00271 Helicase conserved C-terminal domain 198 296 8.6E-7 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS15155 c5ea89cf9c32c8f8fc5c48133e485a07 916 SUPERFAMILY SSF52540 1 302 3.68E-29 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS15155 c5ea89cf9c32c8f8fc5c48133e485a07 916 SMART SM00490 217 297 1.1E-4 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS15155 c5ea89cf9c32c8f8fc5c48133e485a07 916 Pfam PF04851 Type III restriction enzyme, res subunit 1 140 1.3E-16 T 22-04-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 PP4_RS15155 c5ea89cf9c32c8f8fc5c48133e485a07 916 Gene3D G3DSA:3.40.50.300 1 144 9.3E-18 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS16650 39d278127ffc56e8bc44de13fb8a79bc 352 SUPERFAMILY SSF52540 23 262 9.52E-71 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS16650 39d278127ffc56e8bc44de13fb8a79bc 352 SMART SM00382 41 184 6.8E-10 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS16650 39d278127ffc56e8bc44de13fb8a79bc 352 Gene3D G3DSA:1.10.10.60 304 347 5.8E-6 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS16650 39d278127ffc56e8bc44de13fb8a79bc 352 PANTHER PTHR32071 21 347 2.3E-148 T 22-04-2016 PP4_RS16650 39d278127ffc56e8bc44de13fb8a79bc 352 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 107 122 - T 22-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PP4_RS16650 39d278127ffc56e8bc44de13fb8a79bc 352 SUPERFAMILY SSF46689 234 346 1.48E-8 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS16650 39d278127ffc56e8bc44de13fb8a79bc 352 Pfam PF00158 Sigma-54 interaction domain 22 187 3.9E-69 T 22-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 PP4_RS16650 39d278127ffc56e8bc44de13fb8a79bc 352 Gene3D G3DSA:1.10.8.60 194 265 1.2E-22 T 22-04-2016 PP4_RS16650 39d278127ffc56e8bc44de13fb8a79bc 352 Gene3D G3DSA:3.40.50.300 21 193 2.0E-55 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS16650 39d278127ffc56e8bc44de13fb8a79bc 352 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 234 243 - T 22-04-2016 IPR025944 Sigma-54 interaction domain, conserved site PP4_RS20880 bcabcce6198ced9fe2c91207f2d4137d 107 PANTHER PTHR11938 1 85 5.1E-54 T 22-04-2016 PP4_RS20880 bcabcce6198ced9fe2c91207f2d4137d 107 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PP4_RS20880 bcabcce6198ced9fe2c91207f2d4137d 107 Gene3D G3DSA:3.30.70.20 4 95 5.5E-21 T 22-04-2016 PP4_RS20880 bcabcce6198ced9fe2c91207f2d4137d 107 PRINTS PR00354 7Fe ferredoxin signature 19 29 1.4E-18 T 22-04-2016 IPR000813 7Fe ferredoxin GO:0009055 PP4_RS20880 bcabcce6198ced9fe2c91207f2d4137d 107 PRINTS PR00354 7Fe ferredoxin signature 35 52 1.4E-18 T 22-04-2016 IPR000813 7Fe ferredoxin GO:0009055 PP4_RS20880 bcabcce6198ced9fe2c91207f2d4137d 107 PRINTS PR00354 7Fe ferredoxin signature 9 19 1.4E-18 T 22-04-2016 IPR000813 7Fe ferredoxin GO:0009055 PP4_RS20880 bcabcce6198ced9fe2c91207f2d4137d 107 Pfam PF11953 Domain of unknown function (DUF3470) 66 107 1.9E-22 T 22-04-2016 IPR022569 Ferredoxin, C-terminal PP4_RS20880 bcabcce6198ced9fe2c91207f2d4137d 107 PANTHER PTHR11938:SF101 1 85 5.1E-54 T 22-04-2016 PP4_RS20880 bcabcce6198ced9fe2c91207f2d4137d 107 Pfam PF00037 4Fe-4S binding domain 34 55 4.5E-6 T 22-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PP4_RS20880 bcabcce6198ced9fe2c91207f2d4137d 107 SUPERFAMILY SSF54862 1 103 2.62E-24 T 22-04-2016 PP4_RS25630 a1ba09bf12b8656573da071857fdee49 262 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 12 39 7.5E-49 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 PP4_RS25630 a1ba09bf12b8656573da071857fdee49 262 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 107 133 7.5E-49 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 PP4_RS25630 a1ba09bf12b8656573da071857fdee49 262 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 158 186 7.5E-49 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 PP4_RS25630 a1ba09bf12b8656573da071857fdee49 262 PRINTS PR01840 Bacterial Sec-independent translocation TatC protein family signature 89 107 7.5E-49 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 PP4_RS25630 a1ba09bf12b8656573da071857fdee49 262 TIGRFAM TIGR00945 tatC: twin arginine-targeting protein translocase TatC 13 230 3.0E-74 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 PP4_RS25630 a1ba09bf12b8656573da071857fdee49 262 Hamap MF_00902 Sec-independent protein translocase protein TatC [tatC]. 2 243 18.163 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 PP4_RS25630 a1ba09bf12b8656573da071857fdee49 262 PANTHER PTHR30371:SF0 2 262 8.7E-112 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 PP4_RS25630 a1ba09bf12b8656573da071857fdee49 262 ProSitePatterns PS01218 TatC family signature. 158 177 - T 22-04-2016 IPR019820 Sec-independent periplasmic protein translocase, conserved site PP4_RS25630 a1ba09bf12b8656573da071857fdee49 262 PANTHER PTHR30371 2 262 8.7E-112 T 22-04-2016 PP4_RS25630 a1ba09bf12b8656573da071857fdee49 262 Pfam PF00902 Sec-independent protein translocase protein (TatC) 16 225 1.4E-63 T 22-04-2016 IPR002033 Sec-independent periplasmic protein translocase TatC GO:0016021 PP4_RS14775 da7e32340d20faee4deb253b88c11095 350 SMART SM01060 23 350 7.8E-7 T 22-04-2016 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS14775 da7e32340d20faee4deb253b88c11095 350 PANTHER PTHR11465:SF16 1 344 4.5E-98 T 22-04-2016 PP4_RS14775 da7e32340d20faee4deb253b88c11095 350 PIRSF PIRSF000296 12 343 8.7E-114 T 22-04-2016 IPR024168 Catalase, SrpA-type, predicted PP4_RS14775 da7e32340d20faee4deb253b88c11095 350 Pfam PF00199 Catalase 62 339 5.2E-23 T 22-04-2016 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS14775 da7e32340d20faee4deb253b88c11095 350 Gene3D G3DSA:2.40.180.10 42 343 9.7E-73 T 22-04-2016 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS14775 da7e32340d20faee4deb253b88c11095 350 SUPERFAMILY SSF56634 30 339 1.31E-87 T 22-04-2016 IPR020835 Catalase-like domain GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS14775 da7e32340d20faee4deb253b88c11095 350 PANTHER PTHR11465 1 344 4.5E-98 T 22-04-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS20345 08cef8ff27fed9b6e3520b34ea9965be 432 PANTHER PTHR30035:SF1 3 431 5.0E-227 T 22-04-2016 PP4_RS20345 08cef8ff27fed9b6e3520b34ea9965be 432 PANTHER PTHR30035 3 431 5.0E-227 T 22-04-2016 IPR007428 MlaA lipoprotein GO:0016020 PP4_RS20345 08cef8ff27fed9b6e3520b34ea9965be 432 SUPERFAMILY SSF53474 94 390 5.41E-22 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS20345 08cef8ff27fed9b6e3520b34ea9965be 432 Gene3D G3DSA:3.40.50.1820 367 417 7.9E-9 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS20345 08cef8ff27fed9b6e3520b34ea9965be 432 Gene3D G3DSA:3.40.50.1820 85 218 7.9E-9 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS06700 6103ea2d2ea143a57f751c39ee34992d 484 Pfam PF02386 Cation transport protein 47 477 1.5E-53 T 22-04-2016 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 PP4_RS06700 6103ea2d2ea143a57f751c39ee34992d 484 PIRSF PIRSF006247 1 484 5.5E-169 T 22-04-2016 IPR004772 TrkH potassium transport family GO:0016021|GO:0022820|GO:0071805 PP4_RS06700 6103ea2d2ea143a57f751c39ee34992d 484 PANTHER PTHR32024 3 483 6.2E-292 T 22-04-2016 PP4_RS06700 6103ea2d2ea143a57f751c39ee34992d 484 PANTHER PTHR32024:SF3 3 483 6.2E-292 T 22-04-2016 PP4_RS12760 e30de91c081e7badd62f2c868c823ba0 452 PANTHER PTHR20852 5 452 6.1E-301 T 22-04-2016 PP4_RS12760 e30de91c081e7badd62f2c868c823ba0 452 Gene3D G3DSA:3.30.590.10 118 438 2.9E-95 T 22-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 PP4_RS12760 e30de91c081e7badd62f2c868c823ba0 452 SUPERFAMILY SSF54368 6 113 2.49E-18 T 22-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS12760 e30de91c081e7badd62f2c868c823ba0 452 Pfam PF00120 Glutamine synthetase, catalytic domain 115 446 1.3E-109 T 22-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS12760 e30de91c081e7badd62f2c868c823ba0 452 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 250 265 - T 22-04-2016 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS12760 e30de91c081e7badd62f2c868c823ba0 452 SUPERFAMILY SSF55931 114 448 4.41E-108 T 22-04-2016 PP4_RS12760 e30de91c081e7badd62f2c868c823ba0 452 SMART SM01230 114 370 2.3E-110 T 22-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS12760 e30de91c081e7badd62f2c868c823ba0 452 Gene3D G3DSA:3.10.20.70 7 117 1.1E-15 T 22-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS12760 e30de91c081e7badd62f2c868c823ba0 452 PANTHER PTHR20852:SF63 5 452 6.1E-301 T 22-04-2016 PP4_RS03415 0b4721e560418cfee82c00803a209ced 448 Gene3D G3DSA:3.90.1150.10 14 69 4.4E-33 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS03415 0b4721e560418cfee82c00803a209ced 448 Gene3D G3DSA:3.90.1150.10 350 444 4.4E-33 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS03415 0b4721e560418cfee82c00803a209ced 448 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 256 293 - T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS03415 0b4721e560418cfee82c00803a209ced 448 SUPERFAMILY SSF53383 28 444 5.5E-115 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS03415 0b4721e560418cfee82c00803a209ced 448 PANTHER PTHR11986 20 445 8.5E-237 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS03415 0b4721e560418cfee82c00803a209ced 448 Pfam PF00202 Aminotransferase class-III 24 442 8.4E-124 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS03415 0b4721e560418cfee82c00803a209ced 448 PANTHER PTHR11986:SF72 20 445 8.5E-237 T 22-04-2016 PP4_RS03415 0b4721e560418cfee82c00803a209ced 448 Gene3D G3DSA:3.40.640.10 71 348 7.4E-80 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS18575 a85c761170e56e047fd90b4788963377 226 SUPERFAMILY SSF52172 1 118 2.99E-37 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS18575 a85c761170e56e047fd90b4788963377 226 Gene3D G3DSA:3.40.50.2300 1 121 5.3E-36 T 22-04-2016 PP4_RS18575 a85c761170e56e047fd90b4788963377 226 PANTHER PTHR26402:SF575 1 222 8.2E-107 T 22-04-2016 PP4_RS18575 a85c761170e56e047fd90b4788963377 226 SUPERFAMILY SSF46894 122 222 9.07E-29 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS18575 a85c761170e56e047fd90b4788963377 226 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 3 221 2.4E-100 T 22-04-2016 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 PP4_RS18575 a85c761170e56e047fd90b4788963377 226 SMART SM00862 146 221 2.5E-25 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS18575 a85c761170e56e047fd90b4788963377 226 Pfam PF00072 Response regulator receiver domain 4 113 1.1E-22 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS18575 a85c761170e56e047fd90b4788963377 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 221 3.8E-25 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS18575 a85c761170e56e047fd90b4788963377 226 SMART SM00448 1 112 2.3E-36 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS18575 a85c761170e56e047fd90b4788963377 226 PANTHER PTHR26402 1 222 8.2E-107 T 22-04-2016 PP4_RS18575 a85c761170e56e047fd90b4788963377 226 Gene3D G3DSA:1.10.10.10 122 223 2.2E-31 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS23495 df446a3ba3d530ad9e0b06f9f99d4582 574 PANTHER PTHR18968 4 574 0.0 T 22-04-2016 PP4_RS23495 df446a3ba3d530ad9e0b06f9f99d4582 574 Gene3D G3DSA:3.40.50.1220 190 353 7.7E-64 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain PP4_RS23495 df446a3ba3d530ad9e0b06f9f99d4582 574 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 196 330 1.4E-43 T 22-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 PP4_RS23495 df446a3ba3d530ad9e0b06f9f99d4582 574 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 396 545 2.3E-50 T 22-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 PP4_RS23495 df446a3ba3d530ad9e0b06f9f99d4582 574 SUPERFAMILY SSF52518 4 180 3.64E-65 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS23495 df446a3ba3d530ad9e0b06f9f99d4582 574 Gene3D G3DSA:3.40.50.970 4 175 9.1E-74 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS23495 df446a3ba3d530ad9e0b06f9f99d4582 574 PANTHER PTHR18968:SF116 4 574 0.0 T 22-04-2016 PP4_RS23495 df446a3ba3d530ad9e0b06f9f99d4582 574 SUPERFAMILY SSF52467 189 359 1.56E-63 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain PP4_RS23495 df446a3ba3d530ad9e0b06f9f99d4582 574 TIGRFAM TIGR00118 acolac_lg: acetolactate synthase, large subunit, biosynthetic type 4 569 3.7E-258 T 22-04-2016 IPR012846 Acetolactate synthase, large subunit, biosynthetic GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660 KEGG: 00290+2.2.1.6|KEGG: 00650+2.2.1.6|KEGG: 00660+2.2.1.6|KEGG: 00770+2.2.1.6|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5938|MetaCyc: PWY-5939|MetaCyc: PWY-6389|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PP4_RS23495 df446a3ba3d530ad9e0b06f9f99d4582 574 SUPERFAMILY SSF52518 374 566 2.56E-66 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS23495 df446a3ba3d530ad9e0b06f9f99d4582 574 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 166 1.4E-60 T 22-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 PP4_RS23495 df446a3ba3d530ad9e0b06f9f99d4582 574 Gene3D G3DSA:3.40.50.970 354 557 1.0E-73 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS10065 70654d719cf61e540880fba35eca6928 382 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS10065 70654d719cf61e540880fba35eca6928 382 PANTHER PTHR24220:SF402 312 361 6.7E-138 T 22-04-2016 PP4_RS10065 70654d719cf61e540880fba35eca6928 382 PANTHER PTHR24220:SF402 16 293 6.7E-138 T 22-04-2016 PP4_RS10065 70654d719cf61e540880fba35eca6928 382 SUPERFAMILY SSF52540 14 254 4.91E-86 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS10065 70654d719cf61e540880fba35eca6928 382 Pfam PF00005 ABC transporter 30 172 2.4E-34 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS10065 70654d719cf61e540880fba35eca6928 382 Gene3D G3DSA:3.40.50.300 8 246 3.8E-81 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS10065 70654d719cf61e540880fba35eca6928 382 Pfam PF08402 TOBE domain 285 364 6.8E-10 T 22-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 PP4_RS10065 70654d719cf61e540880fba35eca6928 382 PANTHER PTHR24220 312 361 6.7E-138 T 22-04-2016 PP4_RS10065 70654d719cf61e540880fba35eca6928 382 PANTHER PTHR24220 16 293 6.7E-138 T 22-04-2016 PP4_RS10065 70654d719cf61e540880fba35eca6928 382 SUPERFAMILY SSF50331 248 365 2.08E-8 T 22-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal PP4_RS10065 70654d719cf61e540880fba35eca6928 382 SMART SM00382 39 222 2.3E-15 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS00910 c5cbc81d13f09e9961ce4d1e055dd5fe 476 SUPERFAMILY SSF56954 3 26 6.15E-88 T 22-04-2016 PP4_RS00910 c5cbc81d13f09e9961ce4d1e055dd5fe 476 SUPERFAMILY SSF56954 56 466 6.15E-88 T 22-04-2016 PP4_RS00910 c5cbc81d13f09e9961ce4d1e055dd5fe 476 PANTHER PTHR30203 13 466 1.3E-134 T 22-04-2016 PP4_RS00910 c5cbc81d13f09e9961ce4d1e055dd5fe 476 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 9 465 1.4E-82 T 22-04-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 PP4_RS00910 c5cbc81d13f09e9961ce4d1e055dd5fe 476 PANTHER PTHR30203:SF5 13 466 1.3E-134 T 22-04-2016 PP4_RS00910 c5cbc81d13f09e9961ce4d1e055dd5fe 476 Pfam PF02321 Outer membrane efflux protein 285 455 3.0E-24 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PP4_RS00910 c5cbc81d13f09e9961ce4d1e055dd5fe 476 Pfam PF02321 Outer membrane efflux protein 65 254 4.9E-20 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PP4_RS00910 c5cbc81d13f09e9961ce4d1e055dd5fe 476 Gene3D G3DSA:1.20.1600.10 352 466 1.6E-80 T 22-04-2016 PP4_RS00910 c5cbc81d13f09e9961ce4d1e055dd5fe 476 Gene3D G3DSA:1.20.1600.10 143 316 1.6E-80 T 22-04-2016 PP4_RS00910 c5cbc81d13f09e9961ce4d1e055dd5fe 476 Gene3D G3DSA:1.20.1600.10 53 91 1.6E-80 T 22-04-2016 PP4_RS00910 c5cbc81d13f09e9961ce4d1e055dd5fe 476 Gene3D G3DSA:2.20.200.10 317 351 3.2E-8 T 22-04-2016 PP4_RS00910 c5cbc81d13f09e9961ce4d1e055dd5fe 476 Gene3D G3DSA:2.20.200.10 109 142 3.2E-8 T 22-04-2016 PP4_RS27430 c455e939e974ca8f96055a5c6e7bbfa9 456 Pfam PF01926 50S ribosome-binding GTPase 219 307 1.9E-23 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 PP4_RS27430 c455e939e974ca8f96055a5c6e7bbfa9 456 Pfam PF10396 GTP-binding protein TrmE N-terminus 7 120 3.0E-36 T 22-04-2016 IPR018948 GTP-binding protein TrmE, N-terminal PP4_RS27430 c455e939e974ca8f96055a5c6e7bbfa9 456 Gene3D G3DSA:1.20.120.430 122 182 1.4E-58 T 22-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 PP4_RS27430 c455e939e974ca8f96055a5c6e7bbfa9 456 Gene3D G3DSA:1.20.120.430 386 456 1.4E-58 T 22-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 PP4_RS27430 c455e939e974ca8f96055a5c6e7bbfa9 456 Gene3D G3DSA:1.20.120.430 248 271 1.4E-58 T 22-04-2016 IPR027368 tRNA modification GTPase MnmE domain 2 PP4_RS27430 c455e939e974ca8f96055a5c6e7bbfa9 456 Gene3D G3DSA:3.40.50.300 214 247 9.9E-8 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS27430 c455e939e974ca8f96055a5c6e7bbfa9 456 SUPERFAMILY SSF116878 381 456 2.62E-49 T 22-04-2016 PP4_RS27430 c455e939e974ca8f96055a5c6e7bbfa9 456 SUPERFAMILY SSF116878 121 220 2.62E-49 T 22-04-2016 PP4_RS27430 c455e939e974ca8f96055a5c6e7bbfa9 456 PANTHER PTHR11649:SF56 9 456 3.0E-162 T 22-04-2016 PP4_RS27430 c455e939e974ca8f96055a5c6e7bbfa9 456 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 6 456 32.455 T 22-04-2016 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 PP4_RS27430 c455e939e974ca8f96055a5c6e7bbfa9 456 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 217 347 7.4E-20 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 PP4_RS27430 c455e939e974ca8f96055a5c6e7bbfa9 456 SUPERFAMILY SSF52540 188 348 1.27E-41 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS27430 c455e939e974ca8f96055a5c6e7bbfa9 456 SUPERFAMILY SSF52540 73 152 1.27E-41 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS27430 c455e939e974ca8f96055a5c6e7bbfa9 456 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 12 456 1.4E-101 T 22-04-2016 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 PP4_RS27430 c455e939e974ca8f96055a5c6e7bbfa9 456 Gene3D G3DSA:3.30.1360.120 3 121 4.7E-43 T 22-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 PP4_RS27430 c455e939e974ca8f96055a5c6e7bbfa9 456 PANTHER PTHR11649 9 456 3.0E-162 T 22-04-2016 PP4_RS27430 c455e939e974ca8f96055a5c6e7bbfa9 456 Gene3D G3DSA:3.40.50.300 286 376 1.0E-4 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS27430 c455e939e974ca8f96055a5c6e7bbfa9 456 Pfam PF12631 MnmE helical domain 123 453 1.0E-55 T 22-04-2016 IPR025867 MnmE, helical domain PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 SUPERFAMILY SSF52343 1187 1341 4.06E-48 T 22-04-2016 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 SMART SM00926 3 57 4.5E-18 T 22-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 SUPERFAMILY SSF63380 971 1185 3.37E-59 T 22-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 PRINTS PR00369 Flavodoxin signature 820 833 2.2E-10 T 22-04-2016 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 PRINTS PR00369 Flavodoxin signature 900 910 2.2E-10 T 22-04-2016 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 PRINTS PR00369 Flavodoxin signature 868 879 2.2E-10 T 22-04-2016 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 PRINTS PR00369 Flavodoxin signature 924 943 2.2E-10 T 22-04-2016 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 8 25 - T 22-04-2016 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 KEGG: 00910+1.7.99.4 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 Gene3D G3DSA:3.40.50.740 60 134 3.1E-62 T 22-04-2016 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 Gene3D G3DSA:3.40.50.740 316 338 3.1E-62 T 22-04-2016 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 Gene3D G3DSA:3.40.50.740 374 531 3.1E-62 T 22-04-2016 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 Gene3D G3DSA:1.20.990.10 1028 1131 2.2E-27 T 22-04-2016 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain-3 GO:0016491|GO:0055114 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 SUPERFAMILY SSF53706 5 601 1.44E-181 T 22-04-2016 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 Gene3D G3DSA:3.40.50.80 1198 1340 3.4E-56 T 22-04-2016 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 Pfam PF00384 Molybdopterin oxidoreductase 60 487 1.3E-66 T 22-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 Gene3D G3DSA:3.40.228.10 136 315 2.1E-63 T 22-04-2016 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 Pfam PF00258 Flavodoxin 821 952 1.1E-28 T 22-04-2016 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 5 52 1.8E-20 T 22-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 638 665 - T 22-04-2016 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 SUPERFAMILY SSF50692 571 715 5.42E-48 T 22-04-2016 IPR009010 Aspartate decarboxylase-like domain PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 1224 1233 1.1E-24 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 1267 1283 1.1E-24 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 1134 1141 1.1E-24 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 1290 1298 1.1E-24 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 1163 1172 1.1E-24 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 1017 1027 1.1E-24 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 1237 1248 1.1E-24 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 1199 1218 1.1E-24 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 Pfam PF01568 Molydopterin dinucleotide binding domain 600 710 3.3E-34 T 22-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 Gene3D G3DSA:2.40.30.10 978 1027 3.3E-36 T 22-04-2016 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 Gene3D G3DSA:2.40.30.10 1132 1197 3.3E-36 T 22-04-2016 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 Gene3D G3DSA:2.40.40.20 533 716 4.2E-54 T 22-04-2016 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 SUPERFAMILY SSF52218 820 962 6.98E-42 T 22-04-2016 IPR029039 Flavoprotein-like domain PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 Gene3D G3DSA:3.40.50.360 818 961 1.4E-42 T 22-04-2016 IPR029039 Flavoprotein-like domain PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 PANTHER PTHR11615:SF119 5 733 4.3E-195 T 22-04-2016 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 Pfam PF00175 Oxidoreductase NAD-binding domain 1200 1305 1.1E-17 T 22-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 Pfam PF00667 FAD binding domain 979 1168 7.1E-34 T 22-04-2016 IPR003097 FAD-binding, type 1 GO:0016491|GO:0055114 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 Gene3D G3DSA:2.20.25.90 4 52 2.9E-21 T 22-04-2016 PP4_RS20485 1494fca6c4a25197fb5051636affc25f 1341 PANTHER PTHR11615 5 733 4.3E-195 T 22-04-2016 PP4_RS05710 8514edfc0fe52996b468bd42734c3bee 232 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 227 1.9E-21 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS05710 8514edfc0fe52996b468bd42734c3bee 232 Gene3D G3DSA:3.40.50.2300 5 129 4.0E-38 T 22-04-2016 PP4_RS05710 8514edfc0fe52996b468bd42734c3bee 232 PANTHER PTHR26402 6 230 8.5E-113 T 22-04-2016 PP4_RS05710 8514edfc0fe52996b468bd42734c3bee 232 Gene3D G3DSA:1.10.10.10 130 229 2.7E-29 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS05710 8514edfc0fe52996b468bd42734c3bee 232 Pfam PF00072 Response regulator receiver domain 8 117 5.1E-25 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS05710 8514edfc0fe52996b468bd42734c3bee 232 SUPERFAMILY SSF52172 6 134 9.53E-40 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS05710 8514edfc0fe52996b468bd42734c3bee 232 SMART SM00448 6 116 6.3E-41 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS05710 8514edfc0fe52996b468bd42734c3bee 232 SUPERFAMILY SSF46894 128 228 6.52E-26 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS05710 8514edfc0fe52996b468bd42734c3bee 232 PANTHER PTHR26402:SF514 6 230 8.5E-113 T 22-04-2016 PP4_RS05710 8514edfc0fe52996b468bd42734c3bee 232 SMART SM00862 151 227 3.4E-22 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS20470 de281fb5808c392e18701bcfd401a5d7 449 Pfam PF17164 Domain of unknown function (DUF5122) beta-propeller 71 100 0.012 T 22-04-2016 IPR013431 Delta-60 repeat PP4_RS01010 5b8e55232745b1c47a64443dcf1ed392 250 PANTHER PTHR10264:SF60 1 242 1.1E-108 T 22-04-2016 PP4_RS01010 5b8e55232745b1c47a64443dcf1ed392 250 PRINTS PR00721 Stomatin signature 129 152 4.0E-62 T 22-04-2016 IPR001972 Stomatin family GO:0016020 PP4_RS01010 5b8e55232745b1c47a64443dcf1ed392 250 PRINTS PR00721 Stomatin signature 153 171 4.0E-62 T 22-04-2016 IPR001972 Stomatin family GO:0016020 PP4_RS01010 5b8e55232745b1c47a64443dcf1ed392 250 PRINTS PR00721 Stomatin signature 172 193 4.0E-62 T 22-04-2016 IPR001972 Stomatin family GO:0016020 PP4_RS01010 5b8e55232745b1c47a64443dcf1ed392 250 PRINTS PR00721 Stomatin signature 109 126 4.0E-62 T 22-04-2016 IPR001972 Stomatin family GO:0016020 PP4_RS01010 5b8e55232745b1c47a64443dcf1ed392 250 PRINTS PR00721 Stomatin signature 74 95 4.0E-62 T 22-04-2016 IPR001972 Stomatin family GO:0016020 PP4_RS01010 5b8e55232745b1c47a64443dcf1ed392 250 PRINTS PR00721 Stomatin signature 197 220 4.0E-62 T 22-04-2016 IPR001972 Stomatin family GO:0016020 PP4_RS01010 5b8e55232745b1c47a64443dcf1ed392 250 PRINTS PR00721 Stomatin signature 27 49 4.0E-62 T 22-04-2016 IPR001972 Stomatin family GO:0016020 PP4_RS01010 5b8e55232745b1c47a64443dcf1ed392 250 SMART SM00244 20 177 2.7E-64 T 22-04-2016 IPR001107 Band 7 domain PP4_RS01010 5b8e55232745b1c47a64443dcf1ed392 250 PANTHER PTHR10264 1 242 1.1E-108 T 22-04-2016 IPR001972 Stomatin family GO:0016020 PP4_RS01010 5b8e55232745b1c47a64443dcf1ed392 250 SUPERFAMILY SSF117892 51 184 1.57E-44 T 22-04-2016 IPR001107 Band 7 domain PP4_RS01010 5b8e55232745b1c47a64443dcf1ed392 250 Pfam PF01145 SPFH domain / Band 7 family 25 193 6.4E-35 T 22-04-2016 IPR001107 Band 7 domain PP4_RS23660 0b32bc447030758e783252b1a7a5cdc0 132 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 3 119 22.985 T 22-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 PP4_RS23660 0b32bc447030758e783252b1a7a5cdc0 132 ProSitePatterns PS01319 Ribosome-binding factor A signature. 78 99 - T 22-04-2016 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 PP4_RS23660 0b32bc447030758e783252b1a7a5cdc0 132 Pfam PF02033 Ribosome-binding factor A 7 112 3.0E-31 T 22-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 PP4_RS23660 0b32bc447030758e783252b1a7a5cdc0 132 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 1 114 7.6E-34 T 22-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 PP4_RS23660 0b32bc447030758e783252b1a7a5cdc0 132 PANTHER PTHR33515 1 120 1.4E-43 T 22-04-2016 PP4_RS23660 0b32bc447030758e783252b1a7a5cdc0 132 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 9 99 1.0E-46 T 22-04-2016 IPR000238 Ribosome-binding factor A GO:0006364 PP4_RS23660 0b32bc447030758e783252b1a7a5cdc0 132 Gene3D G3DSA:3.30.300.20 4 119 1.0E-39 T 22-04-2016 IPR015946 K homology domain-like, alpha/beta PP4_RS23660 0b32bc447030758e783252b1a7a5cdc0 132 SUPERFAMILY SSF89919 2 106 3.4E-34 T 22-04-2016 IPR023799 Ribosome-binding factor A domain PP4_RS00185 2cbeff650459bcd588a4d33a556e7d60 224 Pfam PF00072 Response regulator receiver domain 3 113 1.2E-25 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS00185 2cbeff650459bcd588a4d33a556e7d60 224 SUPERFAMILY SSF52172 1 177 5.14E-38 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS00185 2cbeff650459bcd588a4d33a556e7d60 224 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 3 221 7.0E-106 T 22-04-2016 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 PP4_RS00185 2cbeff650459bcd588a4d33a556e7d60 224 Gene3D G3DSA:3.40.50.2300 1 120 6.2E-38 T 22-04-2016 PP4_RS00185 2cbeff650459bcd588a4d33a556e7d60 224 PANTHER PTHR26402:SF578 1 223 2.2E-99 T 22-04-2016 PP4_RS00185 2cbeff650459bcd588a4d33a556e7d60 224 Gene3D G3DSA:1.10.10.10 126 223 1.5E-35 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS00185 2cbeff650459bcd588a4d33a556e7d60 224 SMART SM00862 146 221 2.6E-26 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS00185 2cbeff650459bcd588a4d33a556e7d60 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 221 2.7E-27 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS00185 2cbeff650459bcd588a4d33a556e7d60 224 PANTHER PTHR26402 1 223 2.2E-99 T 22-04-2016 PP4_RS00185 2cbeff650459bcd588a4d33a556e7d60 224 SMART SM00448 1 112 1.3E-39 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS26215 d7bec59d889cf8fadcec05c823cae2ab 289 Gene3D G3DSA:3.40.190.10 171 256 3.0E-21 T 22-04-2016 PP4_RS26215 d7bec59d889cf8fadcec05c823cae2ab 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.9E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS26215 d7bec59d889cf8fadcec05c823cae2ab 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.9E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS26215 d7bec59d889cf8fadcec05c823cae2ab 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.9E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS26215 d7bec59d889cf8fadcec05c823cae2ab 289 SUPERFAMILY SSF46785 6 106 3.64E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS26215 d7bec59d889cf8fadcec05c823cae2ab 289 SUPERFAMILY SSF53850 87 287 5.31E-36 T 22-04-2016 PP4_RS26215 d7bec59d889cf8fadcec05c823cae2ab 289 PANTHER PTHR30126:SF11 1 276 2.1E-63 T 22-04-2016 PP4_RS26215 d7bec59d889cf8fadcec05c823cae2ab 289 Gene3D G3DSA:3.40.190.10 89 170 7.2E-16 T 22-04-2016 PP4_RS26215 d7bec59d889cf8fadcec05c823cae2ab 289 Pfam PF03466 LysR substrate binding domain 86 284 5.4E-39 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS26215 d7bec59d889cf8fadcec05c823cae2ab 289 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 61 4.0E-18 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS26215 d7bec59d889cf8fadcec05c823cae2ab 289 PANTHER PTHR30126 1 276 2.1E-63 T 22-04-2016 PP4_RS26215 d7bec59d889cf8fadcec05c823cae2ab 289 TIGRFAM TIGR03339 phn_lysR: aminoethylphosphonate catabolism associated LysR family transcriptional regulator 5 281 1.7E-120 T 22-04-2016 IPR017724 Aminoethylphosphonate utilisation-associated transcription regulator, LysR-type PP4_RS26215 d7bec59d889cf8fadcec05c823cae2ab 289 Gene3D G3DSA:1.10.10.10 5 86 2.0E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS04975 5b05e1d678cf498353e91509f142ed8e 198 Pfam PF03873 Anti sigma-E protein RseA, C-terminal domain 118 178 1.3E-9 T 22-04-2016 IPR005573 Anti sigma-E protein RseA, C-terminal PP4_RS04975 5b05e1d678cf498353e91509f142ed8e 198 PANTHER PTHR38104 1 197 6.3E-35 T 22-04-2016 PP4_RS04975 5b05e1d678cf498353e91509f142ed8e 198 SUPERFAMILY SSF89069 6 71 2.48E-13 T 22-04-2016 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 PP4_RS04975 5b05e1d678cf498353e91509f142ed8e 198 Pfam PF03872 Anti sigma-E protein RseA, N-terminal domain 7 76 7.3E-13 T 22-04-2016 IPR005572 Anti sigma-E protein RseA, N-terminal GO:0016989 PP4_RS09420 3d95c0309a6e31f44303d381b04beee9 226 SUPERFAMILY SSF161098 7 216 4.71E-48 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS09420 3d95c0309a6e31f44303d381b04beee9 226 Gene3D G3DSA:1.10.3720.10 8 218 8.3E-42 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS09420 3d95c0309a6e31f44303d381b04beee9 226 PANTHER PTHR30183 1 220 5.4E-67 T 22-04-2016 PP4_RS09420 3d95c0309a6e31f44303d381b04beee9 226 TIGRFAM TIGR02141 modB_ABC: molybdate ABC transporter, permease protein 12 216 2.2E-72 T 22-04-2016 IPR011867 Molybdate ABC transporter, permease protein GO:0015098|GO:0015689|GO:0016021 PP4_RS09420 3d95c0309a6e31f44303d381b04beee9 226 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 29 216 3.2E-19 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS08585 0e13055a169ff59124905b908b1e1668 252 SUPERFAMILY SSF53639 8 227 2.94E-64 T 22-04-2016 IPR001303 Class II aldolase/adducin N-terminal PP4_RS08585 0e13055a169ff59124905b908b1e1668 252 PANTHER PTHR10672 8 231 4.0E-100 T 22-04-2016 PP4_RS08585 0e13055a169ff59124905b908b1e1668 252 Gene3D G3DSA:3.40.225.10 11 225 1.1E-65 T 22-04-2016 IPR001303 Class II aldolase/adducin N-terminal PP4_RS08585 0e13055a169ff59124905b908b1e1668 252 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 17 199 7.1E-47 T 22-04-2016 IPR001303 Class II aldolase/adducin N-terminal PP4_RS08585 0e13055a169ff59124905b908b1e1668 252 SMART SM01007 17 199 1.4E-61 T 22-04-2016 IPR001303 Class II aldolase/adducin N-terminal PP4_RS07160 4e86162db9013990912eed7efdb07e86 315 PANTHER PTHR34203 101 277 1.1E-17 T 22-04-2016 PP4_RS07160 4e86162db9013990912eed7efdb07e86 315 Gene3D G3DSA:3.40.50.150 87 277 3.1E-45 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS07160 4e86162db9013990912eed7efdb07e86 315 SUPERFAMILY SSF53335 44 277 3.69E-49 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS07160 4e86162db9013990912eed7efdb07e86 315 TIGRFAM TIGR01444 fkbM_fam: methyltransferase, FkbM family 104 247 9.2E-33 T 22-04-2016 IPR006342 Methyltransferase FkbM KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- PP4_RS07160 4e86162db9013990912eed7efdb07e86 315 Pfam PF05050 Methyltransferase FkbM domain 107 271 1.7E-13 T 22-04-2016 IPR006342 Methyltransferase FkbM KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- PP4_RS05940 36e622bdf267fd4958c45770af5188a7 215 PIRSF PIRSF000370 3 215 4.3E-67 T 22-04-2016 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703|UniPathway: UPA00391 PP4_RS05940 36e622bdf267fd4958c45770af5188a7 215 Gene3D G3DSA:3.20.20.70 31 104 5.7E-13 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS05940 36e622bdf267fd4958c45770af5188a7 215 SUPERFAMILY SSF102114 27 104 3.79E-14 T 22-04-2016 PP4_RS05940 36e622bdf267fd4958c45770af5188a7 215 TIGRFAM TIGR04349 rSAM_QueE_gams: putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 5 215 9.2E-110 T 22-04-2016 IPR027621 Putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE PP4_RS05940 36e622bdf267fd4958c45770af5188a7 215 Pfam PF13394 4Fe-4S single cluster domain 26 109 2.6E-11 T 22-04-2016 PP4_RS05940 36e622bdf267fd4958c45770af5188a7 215 Pfam PF04055 Radical SAM superfamily 28 112 2.1E-14 T 22-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 PP4_RS05940 36e622bdf267fd4958c45770af5188a7 215 PANTHER PTHR11228:SF6 1 209 3.9E-65 T 22-04-2016 PP4_RS05940 36e622bdf267fd4958c45770af5188a7 215 PANTHER PTHR11228 1 209 3.9E-65 T 22-04-2016 PP4_RS05940 36e622bdf267fd4958c45770af5188a7 215 Hamap MF_00917 7-carboxy-7-deazaguanine synthase [queE]. 5 212 34.123 T 22-04-2016 IPR024924 7-carboxy-7-deazaguanine synthase-like KEGG: 00790+4.3.99.3|MetaCyc: PWY-6703|UniPathway: UPA00391 PP4_RS14970 fb3c6f4d148f77e4636d377c2498229b 181 Pfam PF04955 HupE / UreJ protein 8 177 2.1E-31 T 22-04-2016 IPR007038 Hydrogenase/Urease accessory protein HupE/UreJ protein PP4_RS14970 fb3c6f4d148f77e4636d377c2498229b 181 PIRSF PIRSF016919 1 181 3.5E-30 T 22-04-2016 IPR007038 Hydrogenase/Urease accessory protein HupE/UreJ protein PP4_RS15615 453764f8074b4fc7970a4bfc474181e8 324 SUPERFAMILY SSF52540 7 297 5.32E-39 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS15615 453764f8074b4fc7970a4bfc474181e8 324 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 37 169 2.8E-61 T 22-04-2016 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 PP4_RS15615 453764f8074b4fc7970a4bfc474181e8 324 Gene3D G3DSA:1.10.8.300 206 320 8.9E-37 T 22-04-2016 PP4_RS15615 453764f8074b4fc7970a4bfc474181e8 324 PANTHER PTHR11603 2 323 1.3E-125 T 22-04-2016 PP4_RS15615 453764f8074b4fc7970a4bfc474181e8 324 PIRSF PIRSF002849 1 324 1.1E-121 T 22-04-2016 IPR016366 ATPase chaperone, AAA-type, MoxR, predicted PP4_RS15615 453764f8074b4fc7970a4bfc474181e8 324 PANTHER PTHR11603:SF148 2 323 1.3E-125 T 22-04-2016 PP4_RS15615 453764f8074b4fc7970a4bfc474181e8 324 Gene3D G3DSA:3.40.50.300 19 185 5.2E-42 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS27035 5c742662101f40e47491d313cdee94db 327 TIGRFAM TIGR02797 exbB: tonB-system energizer ExbB 100 309 1.0E-105 T 22-04-2016 IPR014164 TonB-system energizer ExbB type-1 GO:0006810|GO:0016020 PP4_RS27035 5c742662101f40e47491d313cdee94db 327 PANTHER PTHR30572 92 312 4.9E-67 T 22-04-2016 PP4_RS27035 5c742662101f40e47491d313cdee94db 327 Pfam PF01618 MotA/TolQ/ExbB proton channel family 179 295 4.6E-35 T 22-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 PP4_RS27035 5c742662101f40e47491d313cdee94db 327 PANTHER PTHR30572:SF11 92 312 4.9E-67 T 22-04-2016 PP4_RS01430 ae4817cc31976717441498af04b03306 220 PANTHER PTHR18901:SF7 1 220 1.6E-92 T 22-04-2016 PP4_RS01430 ae4817cc31976717441498af04b03306 220 Gene3D G3DSA:3.40.50.1000 8 215 5.2E-28 T 22-04-2016 IPR023214 HAD-like domain PP4_RS01430 ae4817cc31976717441498af04b03306 220 PANTHER PTHR18901 1 220 1.6E-92 T 22-04-2016 PP4_RS01430 ae4817cc31976717441498af04b03306 220 SUPERFAMILY SSF56784 5 216 9.21E-42 T 22-04-2016 IPR023214 HAD-like domain PP4_RS01430 ae4817cc31976717441498af04b03306 220 Pfam PF13419 Haloacid dehalogenase-like hydrolase 12 186 3.5E-11 T 22-04-2016 IPR023214 HAD-like domain PP4_RS01430 ae4817cc31976717441498af04b03306 220 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 88 186 5.4E-12 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PP4_RS11505 0024a350b1e1224af7e03063263d949f 340 SUPERFAMILY SSF52317 6 199 2.18E-37 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS11505 0024a350b1e1224af7e03063263d949f 340 SUPERFAMILY SSF46689 219 269 6.09E-8 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS11505 0024a350b1e1224af7e03063263d949f 340 SUPERFAMILY SSF46689 271 320 1.34E-6 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS11505 0024a350b1e1224af7e03063263d949f 340 PANTHER PTHR11019:SF68 101 319 1.0E-31 T 22-04-2016 PP4_RS11505 0024a350b1e1224af7e03063263d949f 340 Gene3D G3DSA:1.10.10.60 273 320 2.9E-8 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS11505 0024a350b1e1224af7e03063263d949f 340 Gene3D G3DSA:1.10.10.60 217 272 5.1E-14 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS11505 0024a350b1e1224af7e03063263d949f 340 Gene3D G3DSA:3.40.50.880 7 196 4.6E-31 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS11505 0024a350b1e1224af7e03063263d949f 340 Pfam PF01965 DJ-1/PfpI family 45 181 9.1E-14 T 22-04-2016 IPR002818 DJ-1/PfpI PP4_RS11505 0024a350b1e1224af7e03063263d949f 340 Pfam PF12833 Helix-turn-helix domain 241 318 6.3E-20 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS11505 0024a350b1e1224af7e03063263d949f 340 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 272 314 - T 22-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PP4_RS11505 0024a350b1e1224af7e03063263d949f 340 PANTHER PTHR11019 101 319 1.0E-31 T 22-04-2016 PP4_RS11505 0024a350b1e1224af7e03063263d949f 340 SMART SM00342 235 318 5.1E-22 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS12815 d237348868bd4cabfe7941e35473521f 326 Pfam PF03466 LysR substrate binding domain 103 316 1.1E-20 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS12815 d237348868bd4cabfe7941e35473521f 326 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 53 64 1.4E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS12815 d237348868bd4cabfe7941e35473521f 326 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 43 1.4E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS12815 d237348868bd4cabfe7941e35473521f 326 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 53 1.4E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS12815 d237348868bd4cabfe7941e35473521f 326 PANTHER PTHR30537 9 326 3.2E-63 T 22-04-2016 PP4_RS12815 d237348868bd4cabfe7941e35473521f 326 PANTHER PTHR30537:SF26 9 326 3.2E-63 T 22-04-2016 PP4_RS12815 d237348868bd4cabfe7941e35473521f 326 Gene3D G3DSA:3.40.190.10 191 281 3.2E-10 T 22-04-2016 PP4_RS12815 d237348868bd4cabfe7941e35473521f 326 SUPERFAMILY SSF53850 104 320 6.33E-26 T 22-04-2016 PP4_RS12815 d237348868bd4cabfe7941e35473521f 326 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 17 75 1.2E-19 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS12815 d237348868bd4cabfe7941e35473521f 326 Gene3D G3DSA:3.40.190.10 105 190 1.1E-18 T 22-04-2016 PP4_RS12815 d237348868bd4cabfe7941e35473521f 326 SUPERFAMILY SSF46785 12 96 1.36E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS12815 d237348868bd4cabfe7941e35473521f 326 Gene3D G3DSA:1.10.10.10 16 98 7.2E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS22200 0c5b7d606e845b933c60219f5f46c4a2 387 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 42 272 1.6E-54 T 22-04-2016 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Reactome: REACT_13 PP4_RS22200 0c5b7d606e845b933c60219f5f46c4a2 387 Gene3D G3DSA:3.20.20.10 37 255 4.0E-62 T 22-04-2016 IPR029066 PLP-binding barrel PP4_RS22200 0c5b7d606e845b933c60219f5f46c4a2 387 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 54 72 4.6E-18 T 22-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 PP4_RS22200 0c5b7d606e845b933c60219f5f46c4a2 387 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 177 190 4.6E-18 T 22-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 PP4_RS22200 0c5b7d606e845b933c60219f5f46c4a2 387 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 74 86 4.6E-18 T 22-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 PP4_RS22200 0c5b7d606e845b933c60219f5f46c4a2 387 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 261 280 4.6E-18 T 22-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 PP4_RS22200 0c5b7d606e845b933c60219f5f46c4a2 387 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 276 386 2.2E-17 T 22-04-2016 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Reactome: REACT_13 PP4_RS22200 0c5b7d606e845b933c60219f5f46c4a2 387 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 54 72 - T 22-04-2016 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Reactome: REACT_13 PP4_RS22200 0c5b7d606e845b933c60219f5f46c4a2 387 PRINTS PR01182 Ornithine decarboxylase signature 96 120 2.6E-17 T 22-04-2016 IPR002433 Ornithine decarboxylase GO:0006596 Reactome: REACT_13 PP4_RS22200 0c5b7d606e845b933c60219f5f46c4a2 387 PRINTS PR01182 Ornithine decarboxylase signature 126 148 2.6E-17 T 22-04-2016 IPR002433 Ornithine decarboxylase GO:0006596 Reactome: REACT_13 PP4_RS22200 0c5b7d606e845b933c60219f5f46c4a2 387 PRINTS PR01182 Ornithine decarboxylase signature 329 339 2.6E-17 T 22-04-2016 IPR002433 Ornithine decarboxylase GO:0006596 Reactome: REACT_13 PP4_RS22200 0c5b7d606e845b933c60219f5f46c4a2 387 PRINTS PR01182 Ornithine decarboxylase signature 52 79 2.6E-17 T 22-04-2016 IPR002433 Ornithine decarboxylase GO:0006596 Reactome: REACT_13 PP4_RS22200 0c5b7d606e845b933c60219f5f46c4a2 387 Gene3D G3DSA:2.40.37.10 256 386 5.8E-29 T 22-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 PP4_RS22200 0c5b7d606e845b933c60219f5f46c4a2 387 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 216 229 - T 22-04-2016 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site Reactome: REACT_13 PP4_RS22200 0c5b7d606e845b933c60219f5f46c4a2 387 SUPERFAMILY SSF50621 245 387 7.95E-32 T 22-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 PP4_RS22200 0c5b7d606e845b933c60219f5f46c4a2 387 SUPERFAMILY SSF51419 25 273 1.42E-62 T 22-04-2016 IPR029066 PLP-binding barrel PP4_RS22200 0c5b7d606e845b933c60219f5f46c4a2 387 PANTHER PTHR11482:SF6 3 386 4.9E-128 T 22-04-2016 PP4_RS22200 0c5b7d606e845b933c60219f5f46c4a2 387 PANTHER PTHR11482 3 386 4.9E-128 T 22-04-2016 PP4_RS21635 42299a061fa98b384948d421151b6b01 290 Gene3D G3DSA:1.10.10.10 4 82 2.3E-29 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS21635 42299a061fa98b384948d421151b6b01 290 SUPERFAMILY SSF46689 5 81 8.78E-21 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS21635 42299a061fa98b384948d421151b6b01 290 Pfam PF01380 SIS domain 129 256 8.4E-21 T 22-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 PP4_RS21635 42299a061fa98b384948d421151b6b01 290 Gene3D G3DSA:3.40.50.10490 99 267 2.0E-36 T 22-04-2016 PP4_RS21635 42299a061fa98b384948d421151b6b01 290 PANTHER PTHR30514 1 290 1.3E-162 T 22-04-2016 PP4_RS21635 42299a061fa98b384948d421151b6b01 290 PANTHER PTHR30514:SF7 1 290 1.3E-162 T 22-04-2016 PP4_RS21635 42299a061fa98b384948d421151b6b01 290 Pfam PF01418 Helix-turn-helix domain, rpiR family 6 80 1.4E-28 T 22-04-2016 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 PP4_RS21635 42299a061fa98b384948d421151b6b01 290 SUPERFAMILY SSF53697 94 281 1.18E-39 T 22-04-2016 PP4_RS04880 50b15161ed2644020b31c4d4a1ad456d 295 Gene3D G3DSA:3.40.50.1820 203 273 3.2E-32 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS04880 50b15161ed2644020b31c4d4a1ad456d 295 Gene3D G3DSA:3.40.50.1820 4 141 3.2E-32 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS04880 50b15161ed2644020b31c4d4a1ad456d 295 Pfam PF00561 alpha/beta hydrolase fold 28 254 5.2E-13 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS04880 50b15161ed2644020b31c4d4a1ad456d 295 PANTHER PTHR10992 29 274 4.6E-21 T 22-04-2016 PP4_RS04880 50b15161ed2644020b31c4d4a1ad456d 295 SUPERFAMILY SSF53474 13 260 1.16E-32 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS25460 0a0f9205193af6ef156b2cf673aadde6 468 Hamap MF_00834 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [bioA]. 3 447 49.869 T 22-04-2016 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62|UniPathway: UPA00078 PP4_RS25460 0a0f9205193af6ef156b2cf673aadde6 468 PANTHER PTHR11986 5 452 6.4E-212 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS25460 0a0f9205193af6ef156b2cf673aadde6 468 Gene3D G3DSA:3.40.640.10 66 342 6.9E-93 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS25460 0a0f9205193af6ef156b2cf673aadde6 468 TIGRFAM TIGR00508 bioA: adenosylmethionine-8-amino-7-oxononanoate transaminase 15 442 1.8E-175 T 22-04-2016 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA GO:0004015|GO:0009102 KEGG: 00780+2.6.1.62|UniPathway: UPA00078 PP4_RS25460 0a0f9205193af6ef156b2cf673aadde6 468 PANTHER PTHR11986:SF8 5 452 6.4E-212 T 22-04-2016 PP4_RS25460 0a0f9205193af6ef156b2cf673aadde6 468 SUPERFAMILY SSF53383 10 442 4.75E-128 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS25460 0a0f9205193af6ef156b2cf673aadde6 468 Gene3D G3DSA:3.90.1150.10 344 445 1.6E-53 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS25460 0a0f9205193af6ef156b2cf673aadde6 468 Gene3D G3DSA:3.90.1150.10 5 65 1.6E-53 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS25460 0a0f9205193af6ef156b2cf673aadde6 468 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 252 289 - T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS25460 0a0f9205193af6ef156b2cf673aadde6 468 Pfam PF00202 Aminotransferase class-III 25 439 1.5E-125 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS04325 3ad37c64f8215119067060360f2d9b6a 482 Gene3D G3DSA:3.90.190.20 323 469 5.2E-54 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PP4_RS04325 3ad37c64f8215119067060360f2d9b6a 482 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 16 473 43.923 T 22-04-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PP4_RS04325 3ad37c64f8215119067060360f2d9b6a 482 SUPERFAMILY SSF51984 17 103 5.76E-29 T 22-04-2016 PP4_RS04325 3ad37c64f8215119067060360f2d9b6a 482 SUPERFAMILY SSF53623 102 319 6.41E-74 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PP4_RS04325 3ad37c64f8215119067060360f2d9b6a 482 Gene3D G3DSA:3.40.50.720 17 103 1.5E-35 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS04325 3ad37c64f8215119067060360f2d9b6a 482 Pfam PF08245 Mur ligase middle domain 121 301 4.8E-29 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PP4_RS04325 3ad37c64f8215119067060360f2d9b6a 482 Pfam PF01225 Mur ligase family, catalytic domain 18 116 8.1E-27 T 22-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 PP4_RS04325 3ad37c64f8215119067060360f2d9b6a 482 PANTHER PTHR23135:SF5 11 461 2.0E-223 T 22-04-2016 PP4_RS04325 3ad37c64f8215119067060360f2d9b6a 482 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 18 467 4.7E-172 T 22-04-2016 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PP4_RS04325 3ad37c64f8215119067060360f2d9b6a 482 Gene3D G3DSA:3.40.1190.10 105 322 4.0E-84 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PP4_RS04325 3ad37c64f8215119067060360f2d9b6a 482 PANTHER PTHR23135 11 461 2.0E-223 T 22-04-2016 PP4_RS04325 3ad37c64f8215119067060360f2d9b6a 482 Pfam PF02875 Mur ligase family, glutamate ligase domain 321 411 5.7E-21 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PP4_RS04325 3ad37c64f8215119067060360f2d9b6a 482 SUPERFAMILY SSF53244 320 469 4.58E-47 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PP4_RS07295 18a2f7a382992cf979bd121ff03d1367 128 Gene3D G3DSA:3.40.50.2300 3 125 1.7E-39 T 22-04-2016 PP4_RS07295 18a2f7a382992cf979bd121ff03d1367 128 SMART SM00448 5 119 1.8E-36 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS07295 18a2f7a382992cf979bd121ff03d1367 128 SUPERFAMILY SSF52172 3 125 1.17E-37 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS07295 18a2f7a382992cf979bd121ff03d1367 128 PANTHER PTHR26402 5 125 1.1E-42 T 22-04-2016 PP4_RS07295 18a2f7a382992cf979bd121ff03d1367 128 Pfam PF00072 Response regulator receiver domain 7 120 8.0E-32 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS02090 58deb14b06064eb4b68c7f9f2571bfd4 560 Gene3D G3DSA:3.90.660.10 74 149 2.4E-25 T 22-04-2016 PP4_RS02090 58deb14b06064eb4b68c7f9f2571bfd4 560 Gene3D G3DSA:3.90.660.10 363 465 2.4E-25 T 22-04-2016 PP4_RS02090 58deb14b06064eb4b68c7f9f2571bfd4 560 Pfam PF01593 Flavin containing amine oxidoreductase 55 531 1.3E-41 T 22-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 PP4_RS02090 58deb14b06064eb4b68c7f9f2571bfd4 560 SUPERFAMILY SSF54373 360 474 8.5E-25 T 22-04-2016 PP4_RS02090 58deb14b06064eb4b68c7f9f2571bfd4 560 PANTHER PTHR10742 13 538 6.4E-87 T 22-04-2016 PP4_RS02090 58deb14b06064eb4b68c7f9f2571bfd4 560 PANTHER PTHR10742:SF277 13 538 6.4E-87 T 22-04-2016 PP4_RS02090 58deb14b06064eb4b68c7f9f2571bfd4 560 Gene3D G3DSA:3.50.50.60 43 73 9.7E-12 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS02090 58deb14b06064eb4b68c7f9f2571bfd4 560 Gene3D G3DSA:3.50.50.60 499 544 2.1E-9 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS02090 58deb14b06064eb4b68c7f9f2571bfd4 560 Gene3D G3DSA:3.50.50.60 239 359 2.1E-9 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS02090 58deb14b06064eb4b68c7f9f2571bfd4 560 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 431 446 1.1E-5 T 22-04-2016 PP4_RS02090 58deb14b06064eb4b68c7f9f2571bfd4 560 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 47 69 1.1E-5 T 22-04-2016 PP4_RS02090 58deb14b06064eb4b68c7f9f2571bfd4 560 SUPERFAMILY SSF51905 44 380 3.5E-42 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS02090 58deb14b06064eb4b68c7f9f2571bfd4 560 SUPERFAMILY SSF51905 496 536 3.5E-42 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS04280 475e1c1e5c140995d5972281e7ffaf8a 315 PANTHER PTHR11265 9 315 6.4E-143 T 22-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PP4_RS04280 475e1c1e5c140995d5972281e7ffaf8a 315 SUPERFAMILY SSF81799 118 217 1.1E-33 T 22-04-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PP4_RS04280 475e1c1e5c140995d5972281e7ffaf8a 315 Gene3D G3DSA:3.40.50.150 9 114 5.9E-48 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS04280 475e1c1e5c140995d5972281e7ffaf8a 315 Gene3D G3DSA:3.40.50.150 220 314 5.9E-48 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS04280 475e1c1e5c140995d5972281e7ffaf8a 315 SUPERFAMILY SSF53335 8 117 2.29E-45 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS04280 475e1c1e5c140995d5972281e7ffaf8a 315 SUPERFAMILY SSF53335 217 314 2.29E-45 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS04280 475e1c1e5c140995d5972281e7ffaf8a 315 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 7 313 8.1E-110 T 22-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PP4_RS04280 475e1c1e5c140995d5972281e7ffaf8a 315 PIRSF PIRSF004486 4 315 2.2E-99 T 22-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PP4_RS04280 475e1c1e5c140995d5972281e7ffaf8a 315 Gene3D G3DSA:1.10.150.170 116 219 5.1E-34 T 22-04-2016 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PP4_RS04280 475e1c1e5c140995d5972281e7ffaf8a 315 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 9 314 38.214 T 22-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PP4_RS04280 475e1c1e5c140995d5972281e7ffaf8a 315 PANTHER PTHR11265:SF0 9 315 6.4E-143 T 22-04-2016 PP4_RS04280 475e1c1e5c140995d5972281e7ffaf8a 315 Pfam PF01795 MraW methylase family 7 313 4.4E-109 T 22-04-2016 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PP4_RS01345 892268e6fdf434b1de457d08df07b5f3 127 Pfam PF03061 Thioesterase superfamily 45 117 7.2E-20 T 22-04-2016 IPR006683 Thioesterase domain PP4_RS01345 892268e6fdf434b1de457d08df07b5f3 127 PANTHER PTHR12418 1 126 1.4E-32 T 22-04-2016 PP4_RS01345 892268e6fdf434b1de457d08df07b5f3 127 SUPERFAMILY SSF54637 8 127 1.96E-33 T 22-04-2016 IPR029069 HotDog domain PP4_RS01345 892268e6fdf434b1de457d08df07b5f3 127 Gene3D G3DSA:3.10.129.10 9 127 7.7E-39 T 22-04-2016 IPR029069 HotDog domain PP4_RS01345 892268e6fdf434b1de457d08df07b5f3 127 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 12 125 6.6E-24 T 22-04-2016 IPR003736 Phenylacetic acid degradation-related domain PP4_RS01345 892268e6fdf434b1de457d08df07b5f3 127 PANTHER PTHR12418:SF27 1 126 1.4E-32 T 22-04-2016 PP4_RS10795 3dc8fc209620a74a8efa29c81744ac33 403 SUPERFAMILY SSF55920 157 398 3.66E-61 T 22-04-2016 IPR000994 Peptidase M24, structural domain PP4_RS10795 3dc8fc209620a74a8efa29c81744ac33 403 Pfam PF00557 Metallopeptidase family M24 166 381 2.1E-25 T 22-04-2016 IPR000994 Peptidase M24, structural domain PP4_RS10795 3dc8fc209620a74a8efa29c81744ac33 403 Gene3D G3DSA:3.40.350.10 3 156 1.0E-52 T 22-04-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal PP4_RS10795 3dc8fc209620a74a8efa29c81744ac33 403 Pfam PF01321 Creatinase/Prolidase N-terminal domain 27 158 9.7E-15 T 22-04-2016 IPR000587 Creatinase, N-terminal GO:0016787 PP4_RS10795 3dc8fc209620a74a8efa29c81744ac33 403 Gene3D G3DSA:3.90.230.10 157 397 7.0E-45 T 22-04-2016 IPR000994 Peptidase M24, structural domain PP4_RS10795 3dc8fc209620a74a8efa29c81744ac33 403 PANTHER PTHR10804:SF99 9 402 4.0E-186 T 22-04-2016 PP4_RS10795 3dc8fc209620a74a8efa29c81744ac33 403 PANTHER PTHR10804 9 402 4.0E-186 T 22-04-2016 PP4_RS10795 3dc8fc209620a74a8efa29c81744ac33 403 SUPERFAMILY SSF53092 3 156 1.33E-45 T 22-04-2016 IPR028980 Creatinase/Aminopeptidase P, N-terminal PP4_RS24855 46c6e387c09120fa9dd81bb2924fdac7 255 Pfam PF00106 short chain dehydrogenase 4 189 2.4E-49 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS24855 46c6e387c09120fa9dd81bb2924fdac7 255 Gene3D G3DSA:3.40.50.720 4 232 1.5E-62 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS24855 46c6e387c09120fa9dd81bb2924fdac7 255 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PP4_RS24855 46c6e387c09120fa9dd81bb2924fdac7 255 PANTHER PTHR24322:SF392 7 136 2.6E-77 T 22-04-2016 PP4_RS24855 46c6e387c09120fa9dd81bb2924fdac7 255 PANTHER PTHR24322:SF392 152 184 2.6E-77 T 22-04-2016 PP4_RS24855 46c6e387c09120fa9dd81bb2924fdac7 255 PANTHER PTHR24322 7 136 2.6E-77 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS24855 46c6e387c09120fa9dd81bb2924fdac7 255 PANTHER PTHR24322 152 184 2.6E-77 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS24855 46c6e387c09120fa9dd81bb2924fdac7 255 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 183 0.0073 T 22-04-2016 PP4_RS24855 46c6e387c09120fa9dd81bb2924fdac7 255 SUPERFAMILY SSF51735 4 233 8.81E-60 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS24855 46c6e387c09120fa9dd81bb2924fdac7 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 2.3E-18 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS24855 46c6e387c09120fa9dd81bb2924fdac7 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 2.3E-18 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS24855 46c6e387c09120fa9dd81bb2924fdac7 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 2.3E-18 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS24855 46c6e387c09120fa9dd81bb2924fdac7 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 2.3E-18 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS24855 46c6e387c09120fa9dd81bb2924fdac7 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 206 226 2.3E-18 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS24855 46c6e387c09120fa9dd81bb2924fdac7 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 2.3E-18 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS22010 739862631002886e4f52af47312d295d 485 Pfam PF10150 Ribonuclease E/G family 115 389 1.8E-105 T 22-04-2016 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 PP4_RS22010 739862631002886e4f52af47312d295d 485 SUPERFAMILY SSF50249 39 118 8.88E-20 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS22010 739862631002886e4f52af47312d295d 485 SMART SM00316 37 113 9.8E-10 T 22-04-2016 IPR022967 RNA-binding domain, S1 PP4_RS22010 739862631002886e4f52af47312d295d 485 Pfam PF00575 S1 RNA binding domain 38 100 1.7E-8 T 22-04-2016 IPR003029 S1 domain GO:0003676 PP4_RS22010 739862631002886e4f52af47312d295d 485 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 14 422 4.1E-159 T 22-04-2016 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 PP4_RS22010 739862631002886e4f52af47312d295d 485 Gene3D G3DSA:2.40.50.140 30 119 1.8E-32 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS22010 739862631002886e4f52af47312d295d 485 PANTHER PTHR30001 1 485 1.9E-210 T 22-04-2016 PP4_RS20010 a11a93ca343bc71050cf93be3e512bec 2124 Pfam PF08241 Methyltransferase domain 59 158 1.6E-14 T 22-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 PP4_RS20010 a11a93ca343bc71050cf93be3e512bec 2124 Pfam PF13524 Glycosyl transferases group 1 1290 1380 7.4E-10 T 22-04-2016 PP4_RS20010 a11a93ca343bc71050cf93be3e512bec 2124 SUPERFAMILY SSF53756 1771 2123 1.88E-45 T 22-04-2016 PP4_RS20010 a11a93ca343bc71050cf93be3e512bec 2124 Gene3D G3DSA:3.40.50.2000 1963 2102 2.6E-15 T 22-04-2016 PP4_RS20010 a11a93ca343bc71050cf93be3e512bec 2124 Gene3D G3DSA:3.40.50.150 43 210 2.2E-30 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS20010 a11a93ca343bc71050cf93be3e512bec 2124 PANTHER PTHR10108 54 167 2.2E-20 T 22-04-2016 PP4_RS20010 a11a93ca343bc71050cf93be3e512bec 2124 PANTHER PTHR10108 1887 1974 2.2E-20 T 22-04-2016 PP4_RS20010 a11a93ca343bc71050cf93be3e512bec 2124 Pfam PF00534 Glycosyl transferases group 1 1935 2101 5.6E-13 T 22-04-2016 IPR001296 Glycosyl transferase, family 1 PP4_RS20010 a11a93ca343bc71050cf93be3e512bec 2124 Pfam PF12996 DUF based on E. rectale Gene description (DUF3880) 1151 1223 7.2E-8 T 22-04-2016 IPR024542 Domain of unknown function DUF3880 PP4_RS20010 a11a93ca343bc71050cf93be3e512bec 2124 SUPERFAMILY SSF53335 39 197 2.63E-31 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS20010 a11a93ca343bc71050cf93be3e512bec 2124 SUPERFAMILY SSF57997 404 605 1.14E-5 T 22-04-2016 PP4_RS20010 a11a93ca343bc71050cf93be3e512bec 2124 PANTHER PTHR10108:SF705 54 167 2.2E-20 T 22-04-2016 PP4_RS20010 a11a93ca343bc71050cf93be3e512bec 2124 PANTHER PTHR10108:SF705 1887 1974 2.2E-20 T 22-04-2016 PP4_RS20010 a11a93ca343bc71050cf93be3e512bec 2124 ProDom PD936484 POLYPROTEIN GLYCOPROTEIN M G2 TRANSMEMBRANE NONSTRUCTURAL MEMBRANE CONTAINS: PRECURSOR SIGNAL 228 439 6.0E-4 T 22-04-2016 PP4_RS00380 92dd9bc0e734f95aea50ba02c1171f87 107 Pfam PF05957 Bacterial protein of unknown function (DUF883) 13 106 9.9E-24 T 22-04-2016 IPR010279 Protein of unknown function DUF883, ElaB PP4_RS00380 92dd9bc0e734f95aea50ba02c1171f87 107 PANTHER PTHR35893 1 107 2.6E-12 T 22-04-2016 PP4_RS17580 dce8f7867b0f456b84f388986c460701 227 PANTHER PTHR24220 7 223 2.2E-103 T 22-04-2016 PP4_RS17580 dce8f7867b0f456b84f388986c460701 227 SMART SM00382 34 222 1.6E-16 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS17580 dce8f7867b0f456b84f388986c460701 227 PANTHER PTHR24220:SF509 7 223 2.2E-103 T 22-04-2016 PP4_RS17580 dce8f7867b0f456b84f388986c460701 227 Gene3D G3DSA:3.40.50.300 5 223 4.1E-65 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS17580 dce8f7867b0f456b84f388986c460701 227 SUPERFAMILY SSF52540 6 222 2.1E-64 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS17580 dce8f7867b0f456b84f388986c460701 227 Pfam PF00005 ABC transporter 25 171 1.4E-30 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS17580 dce8f7867b0f456b84f388986c460701 227 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS02335 d8985513ffd7de08e75ab6c25d28c30d 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 9.2E-23 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS02335 d8985513ffd7de08e75ab6c25d28c30d 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 9.2E-23 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS02335 d8985513ffd7de08e75ab6c25d28c30d 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 9.2E-23 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS02335 d8985513ffd7de08e75ab6c25d28c30d 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 9.2E-23 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS02335 d8985513ffd7de08e75ab6c25d28c30d 260 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 9.2E-23 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS02335 d8985513ffd7de08e75ab6c25d28c30d 260 SUPERFAMILY SSF51735 3 247 7.44E-58 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS02335 d8985513ffd7de08e75ab6c25d28c30d 260 PANTHER PTHR24322:SF330 7 136 2.0E-47 T 22-04-2016 PP4_RS02335 d8985513ffd7de08e75ab6c25d28c30d 260 PANTHER PTHR24322:SF330 152 184 2.0E-47 T 22-04-2016 PP4_RS02335 d8985513ffd7de08e75ab6c25d28c30d 260 PIRSF PIRSF000126 1 255 4.8E-63 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS02335 d8985513ffd7de08e75ab6c25d28c30d 260 PANTHER PTHR24322 7 136 2.0E-47 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS02335 d8985513ffd7de08e75ab6c25d28c30d 260 PANTHER PTHR24322 152 184 2.0E-47 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS02335 d8985513ffd7de08e75ab6c25d28c30d 260 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 3 188 3.7E-4 T 22-04-2016 PP4_RS02335 d8985513ffd7de08e75ab6c25d28c30d 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 2.4E-9 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS02335 d8985513ffd7de08e75ab6c25d28c30d 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 2.4E-9 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS02335 d8985513ffd7de08e75ab6c25d28c30d 260 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 2.4E-9 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS02335 d8985513ffd7de08e75ab6c25d28c30d 260 Gene3D G3DSA:3.40.50.720 3 234 1.2E-54 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS02335 d8985513ffd7de08e75ab6c25d28c30d 260 Pfam PF00106 short chain dehydrogenase 5 190 2.5E-43 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS20190 a5cd5b826dbe4cca211dd183c0ea313e 223 Gene3D G3DSA:3.40.50.1000 83 216 7.7E-41 T 22-04-2016 IPR023214 HAD-like domain PP4_RS20190 a5cd5b826dbe4cca211dd183c0ea313e 223 Gene3D G3DSA:3.40.50.1000 1 19 7.7E-41 T 22-04-2016 IPR023214 HAD-like domain PP4_RS20190 a5cd5b826dbe4cca211dd183c0ea313e 223 PANTHER PTHR18901 1 218 8.0E-102 T 22-04-2016 PP4_RS20190 a5cd5b826dbe4cca211dd183c0ea313e 223 Gene3D G3DSA:1.10.150.240 20 82 9.7E-8 T 22-04-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 PP4_RS20190 a5cd5b826dbe4cca211dd183c0ea313e 223 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 80 180 1.5E-10 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PP4_RS20190 a5cd5b826dbe4cca211dd183c0ea313e 223 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 130 146 7.6E-9 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PP4_RS20190 a5cd5b826dbe4cca211dd183c0ea313e 223 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 99 112 7.6E-9 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PP4_RS20190 a5cd5b826dbe4cca211dd183c0ea313e 223 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 148 168 7.6E-9 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PP4_RS20190 a5cd5b826dbe4cca211dd183c0ea313e 223 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 3 14 7.6E-9 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PP4_RS20190 a5cd5b826dbe4cca211dd183c0ea313e 223 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 124 183 2.6E-8 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PP4_RS20190 a5cd5b826dbe4cca211dd183c0ea313e 223 SUPERFAMILY SSF56784 3 217 3.18E-57 T 22-04-2016 IPR023214 HAD-like domain PP4_RS20190 a5cd5b826dbe4cca211dd183c0ea313e 223 PANTHER PTHR18901:SF24 1 218 8.0E-102 T 22-04-2016 PP4_RS20190 a5cd5b826dbe4cca211dd183c0ea313e 223 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 6 212 1.5E-51 T 22-04-2016 IPR006346 2-phosphoglycolate phosphatase, prokaryotic GO:0008967|GO:0046295 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181|UniPathway: UPA00865 PP4_RS20190 a5cd5b826dbe4cca211dd183c0ea313e 223 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 186 3.6E-32 T 22-04-2016 IPR023214 HAD-like domain PP4_RS01425 6243fd35e89c5f814aac5f880e4f4449 146 SMART SM00257 96 145 2.3E-9 T 22-04-2016 IPR018392 LysM domain PP4_RS01425 6243fd35e89c5f814aac5f880e4f4449 146 Pfam PF04972 BON domain 23 87 3.4E-14 T 22-04-2016 IPR007055 BON domain PP4_RS01425 6243fd35e89c5f814aac5f880e4f4449 146 Pfam PF01476 LysM domain 98 145 3.2E-9 T 22-04-2016 IPR018392 LysM domain PP4_RS01425 6243fd35e89c5f814aac5f880e4f4449 146 Gene3D G3DSA:3.10.350.10 98 145 3.8E-8 T 22-04-2016 IPR018392 LysM domain PP4_RS01425 6243fd35e89c5f814aac5f880e4f4449 146 PANTHER PTHR34700 1 145 7.0E-30 T 22-04-2016 PP4_RS01425 6243fd35e89c5f814aac5f880e4f4449 146 SUPERFAMILY SSF54106 95 145 8.24E-7 T 22-04-2016 IPR018392 LysM domain PP4_RS23605 f481e0c077be527c0c8c433d8bcfe8c7 554 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 49 528 40.396 T 22-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 PP4_RS23605 f481e0c077be527c0c8c433d8bcfe8c7 554 SUPERFAMILY SSF53697 9 551 1.19E-207 T 22-04-2016 PP4_RS23605 f481e0c077be527c0c8c433d8bcfe8c7 554 PANTHER PTHR11469 2 549 1.2E-279 T 22-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 PP4_RS23605 f481e0c077be527c0c8c433d8bcfe8c7 554 PRINTS PR00662 Glucose-6-phosphate isomerase signature 265 283 6.2E-52 T 22-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 PP4_RS23605 f481e0c077be527c0c8c433d8bcfe8c7 554 PRINTS PR00662 Glucose-6-phosphate isomerase signature 469 487 6.2E-52 T 22-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 PP4_RS23605 f481e0c077be527c0c8c433d8bcfe8c7 554 PRINTS PR00662 Glucose-6-phosphate isomerase signature 487 501 6.2E-52 T 22-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 PP4_RS23605 f481e0c077be527c0c8c433d8bcfe8c7 554 PRINTS PR00662 Glucose-6-phosphate isomerase signature 153 172 6.2E-52 T 22-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 PP4_RS23605 f481e0c077be527c0c8c433d8bcfe8c7 554 PRINTS PR00662 Glucose-6-phosphate isomerase signature 342 363 6.2E-52 T 22-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 PP4_RS23605 f481e0c077be527c0c8c433d8bcfe8c7 554 PRINTS PR00662 Glucose-6-phosphate isomerase signature 501 514 6.2E-52 T 22-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 PP4_RS23605 f481e0c077be527c0c8c433d8bcfe8c7 554 Gene3D G3DSA:3.40.50.10490 102 294 2.2E-74 T 22-04-2016 PP4_RS23605 f481e0c077be527c0c8c433d8bcfe8c7 554 Gene3D G3DSA:3.40.50.10490 297 510 2.4E-134 T 22-04-2016 PP4_RS23605 f481e0c077be527c0c8c433d8bcfe8c7 554 Gene3D G3DSA:3.40.50.10490 13 101 2.4E-134 T 22-04-2016 PP4_RS23605 f481e0c077be527c0c8c433d8bcfe8c7 554 Gene3D G3DSA:1.10.1390.10 511 551 2.0E-16 T 22-04-2016 IPR023096 Phosphoglucose isomerase, C-terminal GO:0004347|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 PP4_RS23605 f481e0c077be527c0c8c433d8bcfe8c7 554 ProSitePatterns PS00765 Phosphoglucose isomerase signature 1. 269 282 - T 22-04-2016 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 PP4_RS23605 f481e0c077be527c0c8c433d8bcfe8c7 554 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 501 518 - T 22-04-2016 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 PP4_RS23605 f481e0c077be527c0c8c433d8bcfe8c7 554 Pfam PF00342 Phosphoglucose isomerase 55 545 7.5E-193 T 22-04-2016 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|UniPathway: UPA00109 PP4_RS05475 9577495fd044afd29454212a8889e509 233 PIRSF PIRSF039137 1 233 3.9E-103 T 22-04-2016 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 PP4_RS05475 9577495fd044afd29454212a8889e509 233 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS05475 9577495fd044afd29454212a8889e509 233 PANTHER PTHR24220:SF568 3 232 1.8E-132 T 22-04-2016 PP4_RS05475 9577495fd044afd29454212a8889e509 233 PANTHER PTHR24220 3 232 1.8E-132 T 22-04-2016 PP4_RS05475 9577495fd044afd29454212a8889e509 233 SMART SM00382 26 210 2.2E-5 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS05475 9577495fd044afd29454212a8889e509 233 Pfam PF00005 ABC transporter 17 161 6.4E-33 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS05475 9577495fd044afd29454212a8889e509 233 Gene3D G3DSA:3.40.50.300 1 229 1.5E-62 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS05475 9577495fd044afd29454212a8889e509 233 SUPERFAMILY SSF52540 2 231 2.45E-60 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26930 4f04f37b7db8cb005fdfcf13f17f8095 78 PANTHER PTHR13528 1 72 8.1E-37 T 22-04-2016 IPR026569 Ribosomal protein L28/L24 GO:0003735 PP4_RS26930 4f04f37b7db8cb005fdfcf13f17f8095 78 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 67 22.014 T 22-04-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS26930 4f04f37b7db8cb005fdfcf13f17f8095 78 SUPERFAMILY SSF143800 2 77 2.55E-31 T 22-04-2016 PP4_RS26930 4f04f37b7db8cb005fdfcf13f17f8095 78 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 58 5.4E-29 T 22-04-2016 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS26930 4f04f37b7db8cb005fdfcf13f17f8095 78 Gene3D G3DSA:2.30.170.40 2 77 3.7E-37 T 22-04-2016 PP4_RS26930 4f04f37b7db8cb005fdfcf13f17f8095 78 Pfam PF00830 Ribosomal L28 family 3 61 1.8E-28 T 22-04-2016 IPR026569 Ribosomal protein L28/L24 GO:0003735 PP4_RS25560 52778a27311533e1d8726bd4ed0d4549 283 Gene3D G3DSA:3.40.50.1820 4 268 1.1E-54 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS25560 52778a27311533e1d8726bd4ed0d4549 283 PANTHER PTHR10992 8 268 6.7E-39 T 22-04-2016 PP4_RS25560 52778a27311533e1d8726bd4ed0d4549 283 PRINTS PR00111 Alpha/beta hydrolase fold signature 54 69 4.7E-16 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS25560 52778a27311533e1d8726bd4ed0d4549 283 PRINTS PR00111 Alpha/beta hydrolase fold signature 213 227 4.7E-16 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS25560 52778a27311533e1d8726bd4ed0d4549 283 PRINTS PR00111 Alpha/beta hydrolase fold signature 98 111 4.7E-16 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS25560 52778a27311533e1d8726bd4ed0d4549 283 PRINTS PR00111 Alpha/beta hydrolase fold signature 112 125 4.7E-16 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS25560 52778a27311533e1d8726bd4ed0d4549 283 TIGRFAM TIGR02240 PHA_depoly_arom: poly(3-hydroxyalkanoate) depolymerase 4 279 7.7E-190 T 22-04-2016 IPR011942 Poly(3-hydroxyalkanoate) depolymerase KEGG: 00051+3.1.1.-|KEGG: 00053+3.1.1.-|KEGG: 00363+3.1.1.-|KEGG: 00365+3.1.1.-|KEGG: 00534+3.1.1.-|KEGG: 00564+3.1.1.-|KEGG: 00623+3.1.1.-|KEGG: 00640+3.1.1.-|KEGG: 00830+3.1.1.-|KEGG: 00900+3.1.1.-|KEGG: 00940+3.1.1.-|KEGG: 00960+3.1.1.- PP4_RS25560 52778a27311533e1d8726bd4ed0d4549 283 Pfam PF00561 alpha/beta hydrolase fold 30 253 4.0E-28 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS25560 52778a27311533e1d8726bd4ed0d4549 283 SUPERFAMILY SSF53474 2 267 4.86E-55 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS16525 f4d33e4bc5f060d25c45a7e8fa7a7599 504 SUPERFAMILY SSF103473 256 428 1.7E-67 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS16525 f4d33e4bc5f060d25c45a7e8fa7a7599 504 SUPERFAMILY SSF103473 469 495 1.7E-67 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS16525 f4d33e4bc5f060d25c45a7e8fa7a7599 504 SUPERFAMILY SSF103473 20 202 1.7E-67 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS16525 f4d33e4bc5f060d25c45a7e8fa7a7599 504 PANTHER PTHR23501 2 500 8.6E-182 T 22-04-2016 PP4_RS16525 f4d33e4bc5f060d25c45a7e8fa7a7599 504 Pfam PF07690 Major Facilitator Superfamily 26 418 1.8E-49 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS16525 f4d33e4bc5f060d25c45a7e8fa7a7599 504 PRINTS PR01036 Tetracycline resistance protein TetB signature 115 135 5.2E-9 T 22-04-2016 PP4_RS16525 f4d33e4bc5f060d25c45a7e8fa7a7599 504 PRINTS PR01036 Tetracycline resistance protein TetB signature 145 169 5.2E-9 T 22-04-2016 PP4_RS16525 f4d33e4bc5f060d25c45a7e8fa7a7599 504 PRINTS PR01036 Tetracycline resistance protein TetB signature 409 428 5.2E-9 T 22-04-2016 PP4_RS16525 f4d33e4bc5f060d25c45a7e8fa7a7599 504 PRINTS PR01036 Tetracycline resistance protein TetB signature 210 228 5.2E-9 T 22-04-2016 PP4_RS16525 f4d33e4bc5f060d25c45a7e8fa7a7599 504 PRINTS PR01036 Tetracycline resistance protein TetB signature 25 49 5.2E-9 T 22-04-2016 PP4_RS16525 f4d33e4bc5f060d25c45a7e8fa7a7599 504 PANTHER PTHR23501:SF73 2 500 8.6E-182 T 22-04-2016 PP4_RS16525 f4d33e4bc5f060d25c45a7e8fa7a7599 504 Gene3D G3DSA:1.20.1250.20 23 196 1.6E-33 T 22-04-2016 PP4_RS16525 f4d33e4bc5f060d25c45a7e8fa7a7599 504 Gene3D G3DSA:1.20.1250.20 469 500 2.6E-20 T 22-04-2016 PP4_RS16525 f4d33e4bc5f060d25c45a7e8fa7a7599 504 Gene3D G3DSA:1.20.1250.20 271 429 2.6E-20 T 22-04-2016 PP4_RS16525 f4d33e4bc5f060d25c45a7e8fa7a7599 504 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 22 489 9.5E-78 T 22-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 PP4_RS00810 53d0541e715961620ee0471be93ccea3 804 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 787 804 - T 22-04-2016 IPR010917 TonB-dependent receptor, conserved site PP4_RS00810 53d0541e715961620ee0471be93ccea3 804 Pfam PF00593 TonB dependent receptor 562 803 2.7E-33 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS00810 53d0541e715961620ee0471be93ccea3 804 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 151 804 1.9E-142 T 22-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 PP4_RS00810 53d0541e715961620ee0471be93ccea3 804 Pfam PF07660 Secretin and TonB N terminus short domain 61 105 1.7E-8 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS00810 53d0541e715961620ee0471be93ccea3 804 PANTHER PTHR32552 7 31 0.0 T 22-04-2016 PP4_RS00810 53d0541e715961620ee0471be93ccea3 804 Gene3D G3DSA:2.40.170.20 269 804 1.4E-164 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS00810 53d0541e715961620ee0471be93ccea3 804 SUPERFAMILY SSF56935 141 804 2.8E-142 T 22-04-2016 PP4_RS00810 53d0541e715961620ee0471be93ccea3 804 SMART SM00965 55 106 5.6E-12 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS00810 53d0541e715961620ee0471be93ccea3 804 PANTHER PTHR32552 141 804 0.0 T 22-04-2016 PP4_RS00810 53d0541e715961620ee0471be93ccea3 804 Gene3D G3DSA:2.170.130.10 131 262 4.3E-38 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS00810 53d0541e715961620ee0471be93ccea3 804 Pfam PF07715 TonB-dependent Receptor Plug Domain 150 254 2.9E-23 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS00810 53d0541e715961620ee0471be93ccea3 804 PANTHER PTHR32552:SF21 141 804 0.0 T 22-04-2016 PP4_RS00810 53d0541e715961620ee0471be93ccea3 804 PANTHER PTHR32552:SF21 7 31 0.0 T 22-04-2016 PP4_RS27315 f6506c8d3b3393912e798fb5c24a68c7 402 PANTHER PTHR13748:SF4 347 387 1.2E-188 T 22-04-2016 PP4_RS27315 f6506c8d3b3393912e798fb5c24a68c7 402 PANTHER PTHR13748:SF4 1 331 1.2E-188 T 22-04-2016 PP4_RS27315 f6506c8d3b3393912e798fb5c24a68c7 402 SMART SM00833 256 373 6.0E-44 T 22-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal PP4_RS27315 f6506c8d3b3393912e798fb5c24a68c7 402 Gene3D G3DSA:3.30.1220.10 242 373 1.6E-14 T 22-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal PP4_RS27315 f6506c8d3b3393912e798fb5c24a68c7 402 SUPERFAMILY SSF52540 3 323 6.73E-44 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS27315 f6506c8d3b3393912e798fb5c24a68c7 402 Gene3D G3DSA:3.40.50.300 3 229 5.7E-73 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS27315 f6506c8d3b3393912e798fb5c24a68c7 402 PANTHER PTHR13748 347 387 1.2E-188 T 22-04-2016 PP4_RS27315 f6506c8d3b3393912e798fb5c24a68c7 402 PANTHER PTHR13748 1 331 1.2E-188 T 22-04-2016 PP4_RS27315 f6506c8d3b3393912e798fb5c24a68c7 402 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 6 210 1.1E-56 T 22-04-2016 IPR003495 CobW/HypB/UreG, nucleotide-binding domain PP4_RS27315 f6506c8d3b3393912e798fb5c24a68c7 402 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 260 373 2.7E-25 T 22-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal PP4_RS20185 16766ed3681911e1880aebe7f66aeda3 232 PANTHER PTHR10108 2 228 4.4E-147 T 22-04-2016 PP4_RS20185 16766ed3681911e1880aebe7f66aeda3 232 Gene3D G3DSA:3.40.50.150 19 217 1.4E-48 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS20185 16766ed3681911e1880aebe7f66aeda3 232 Hamap MF_00472 Ubiquinone biosynthesis O-methyltransferase [ubiG]. 6 231 38.8 T 22-04-2016 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|UniPathway: UPA00232 PP4_RS20185 16766ed3681911e1880aebe7f66aeda3 232 PANTHER PTHR10108:SF910 2 228 4.4E-147 T 22-04-2016 PP4_RS20185 16766ed3681911e1880aebe7f66aeda3 232 Pfam PF13489 Methyltransferase domain 43 199 4.1E-25 T 22-04-2016 PP4_RS20185 16766ed3681911e1880aebe7f66aeda3 232 TIGRFAM TIGR01983 UbiG: 3-demethylubiquinone-9 3-O-methyltransferase 8 225 2.0E-89 T 22-04-2016 IPR010233 Ubiquinone biosynthesis O-methyltransferase GO:0006744|GO:0008425 KEGG: 00130+2.1.1.222+2.1.1.64|KEGG: 00340+2.1.1.22|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-5870|MetaCyc: PWY-5871|MetaCyc: PWY-5872|MetaCyc: PWY-5873|MetaCyc: PWY-6708|MetaCyc: PWY-7230|MetaCyc: PWY-7233|UniPathway: UPA00232 PP4_RS20185 16766ed3681911e1880aebe7f66aeda3 232 SUPERFAMILY SSF53335 12 225 1.99E-50 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS04105 16296ce9c0f05e0cb57e53733000a6bd 156 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase accessory protein [moaC]. 1 155 35.675 T 22-04-2016 IPR023046 Molybdenum cofactor biosynthesis C, bacterial-type UniPathway: UPA00344 PP4_RS04105 16296ce9c0f05e0cb57e53733000a6bd 156 PANTHER PTHR22960 2 155 3.9E-101 T 22-04-2016 PP4_RS04105 16296ce9c0f05e0cb57e53733000a6bd 156 Gene3D G3DSA:3.30.70.640 2 155 7.0E-69 T 22-04-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 UniPathway: UPA00344 PP4_RS04105 16296ce9c0f05e0cb57e53733000a6bd 156 Pfam PF01967 MoaC family 13 147 1.1E-55 T 22-04-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 UniPathway: UPA00344 PP4_RS04105 16296ce9c0f05e0cb57e53733000a6bd 156 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 2 149 3.7E-69 T 22-04-2016 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 UniPathway: UPA00344 PP4_RS04105 16296ce9c0f05e0cb57e53733000a6bd 156 SUPERFAMILY SSF55040 9 152 7.45E-61 T 22-04-2016 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 UniPathway: UPA00344 PP4_RS16800 fa0f944f1815743267b66fb4069185da 635 PANTHER PTHR12110:SF14 1 275 3.3E-88 T 22-04-2016 PP4_RS16800 fa0f944f1815743267b66fb4069185da 635 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 440 563 8.9E-9 T 22-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain PP4_RS16800 fa0f944f1815743267b66fb4069185da 635 Gene3D G3DSA:3.10.180.10 437 625 3.9E-42 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PP4_RS16800 fa0f944f1815743267b66fb4069185da 635 SUPERFAMILY SSF54593 291 621 2.2E-62 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PP4_RS16800 fa0f944f1815743267b66fb4069185da 635 Pfam PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal 293 426 2.8E-33 T 22-04-2016 PP4_RS16800 fa0f944f1815743267b66fb4069185da 635 Gene3D G3DSA:3.20.20.150 1 264 5.7E-80 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PP4_RS16800 fa0f944f1815743267b66fb4069185da 635 Gene3D G3DSA:3.10.180.10 286 427 7.9E-34 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PP4_RS16800 fa0f944f1815743267b66fb4069185da 635 Pfam PF01261 Xylose isomerase-like TIM barrel 18 217 2.8E-39 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PP4_RS16800 fa0f944f1815743267b66fb4069185da 635 PANTHER PTHR12110 1 275 3.3E-88 T 22-04-2016 PP4_RS16800 fa0f944f1815743267b66fb4069185da 635 SUPERFAMILY SSF51658 1 270 1.05E-75 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PP4_RS04565 0ca4c8cf6e49ac4656f59f14f34ad160 262 SUPERFAMILY SSF69593 21 184 2.48E-24 T 22-04-2016 PP4_RS04565 0ca4c8cf6e49ac4656f59f14f34ad160 262 Pfam PF01553 Acyltransferase 65 180 1.6E-17 T 22-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 PP4_RS04565 0ca4c8cf6e49ac4656f59f14f34ad160 262 PANTHER PTHR10434:SF8 4 191 1.6E-49 T 22-04-2016 PP4_RS04565 0ca4c8cf6e49ac4656f59f14f34ad160 262 PANTHER PTHR10434:SF8 208 245 1.6E-49 T 22-04-2016 PP4_RS04565 0ca4c8cf6e49ac4656f59f14f34ad160 262 SMART SM00563 72 183 2.1E-23 T 22-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 PP4_RS04565 0ca4c8cf6e49ac4656f59f14f34ad160 262 Gene3D G3DSA:3.40.1130.10 70 180 1.0E-5 T 22-04-2016 PP4_RS04565 0ca4c8cf6e49ac4656f59f14f34ad160 262 PANTHER PTHR10434 4 191 1.6E-49 T 22-04-2016 PP4_RS04565 0ca4c8cf6e49ac4656f59f14f34ad160 262 PANTHER PTHR10434 208 245 1.6E-49 T 22-04-2016 PP4_RS15355 246448db73c10b3c33bc9fa5c7db5581 236 PANTHER PTHR30625:SF3 11 224 3.7E-57 T 22-04-2016 PP4_RS15355 246448db73c10b3c33bc9fa5c7db5581 236 PANTHER PTHR30625 11 224 3.7E-57 T 22-04-2016 PP4_RS15355 246448db73c10b3c33bc9fa5c7db5581 236 Pfam PF01618 MotA/TolQ/ExbB proton channel family 86 210 1.4E-40 T 22-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 PP4_RS15355 246448db73c10b3c33bc9fa5c7db5581 236 TIGRFAM TIGR02796 tolQ: protein TolQ 12 223 1.1E-73 T 22-04-2016 IPR014163 Tol-Pal system, TolQ GO:0015031|GO:0016021 PP4_RS20045 b3385593a45c2e03864a777f8c093a51 293 SUPERFAMILY SSF53448 2 288 1.88E-93 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS20045 b3385593a45c2e03864a777f8c093a51 293 PANTHER PTHR22572:SF105 4 271 2.8E-181 T 22-04-2016 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 PP4_RS20045 b3385593a45c2e03864a777f8c093a51 293 PANTHER PTHR22572 4 271 2.8E-181 T 22-04-2016 PP4_RS20045 b3385593a45c2e03864a777f8c093a51 293 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 4 288 1.2E-158 T 22-04-2016 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 PP4_RS20045 b3385593a45c2e03864a777f8c093a51 293 Gene3D G3DSA:3.90.550.10 1 267 2.4E-70 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS20045 b3385593a45c2e03864a777f8c093a51 293 Pfam PF00483 Nucleotidyl transferase 4 237 1.9E-71 T 22-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 PP4_RS21945 bd7ff787ff089998bc4b7dca4e4d4d28 154 PANTHER PTHR30505:SF6 1 154 2.8E-65 T 22-04-2016 PP4_RS21945 bd7ff787ff089998bc4b7dca4e4d4d28 154 TIGRFAM TIGR01419 nitro_reg_IIA: PTS IIA-like nitrogen-regulatory protein PtsN 4 148 2.1E-53 T 22-04-2016 IPR006320 Phosphotransferase system, IIA-like nitrogen-regulatory protein PtsN GO:0008982|GO:0009401 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PP4_RS21945 bd7ff787ff089998bc4b7dca4e4d4d28 154 PANTHER PTHR30505 1 154 2.8E-65 T 22-04-2016 PP4_RS21945 bd7ff787ff089998bc4b7dca4e4d4d28 154 SUPERFAMILY SSF55804 1 147 1.7E-40 T 22-04-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: REACT_15518 PP4_RS21945 bd7ff787ff089998bc4b7dca4e4d4d28 154 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 8 148 1.1E-34 T 22-04-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PP4_RS21945 bd7ff787ff089998bc4b7dca4e4d4d28 154 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 53 69 - T 22-04-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PP4_RS21945 bd7ff787ff089998bc4b7dca4e4d4d28 154 Gene3D G3DSA:3.40.930.10 1 152 1.9E-41 T 22-04-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PP4_RS08620 37cb3a30489d82e6ea4be4eaa3ed96ca 650 PANTHER PTHR18866:SF102 3 650 0.0 T 22-04-2016 PP4_RS08620 37cb3a30489d82e6ea4be4eaa3ed96ca 650 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 290 297 - T 22-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 PP4_RS08620 37cb3a30489d82e6ea4be4eaa3ed96ca 650 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 120 327 3.9E-81 T 22-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 PP4_RS08620 37cb3a30489d82e6ea4be4eaa3ed96ca 650 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 157 171 - T 22-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 PP4_RS08620 37cb3a30489d82e6ea4be4eaa3ed96ca 650 SUPERFAMILY SSF56059 87 350 1.06E-72 T 22-04-2016 PP4_RS08620 37cb3a30489d82e6ea4be4eaa3ed96ca 650 Pfam PF00289 Biotin carboxylase, N-terminal domain 7 114 2.4E-40 T 22-04-2016 IPR005481 Biotin carboxylase-like, N-terminal domain PP4_RS08620 37cb3a30489d82e6ea4be4eaa3ed96ca 650 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 605 622 - T 22-04-2016 IPR001882 Biotin-binding site PP4_RS08620 37cb3a30489d82e6ea4be4eaa3ed96ca 650 Pfam PF02785 Biotin carboxylase C-terminal domain 340 447 4.5E-36 T 22-04-2016 IPR005482 Biotin carboxylase, C-terminal PP4_RS08620 37cb3a30489d82e6ea4be4eaa3ed96ca 650 Gene3D G3DSA:2.40.50.100 580 648 1.8E-25 T 22-04-2016 PP4_RS08620 37cb3a30489d82e6ea4be4eaa3ed96ca 650 Gene3D G3DSA:3.40.50.20 7 132 3.1E-46 T 22-04-2016 IPR016185 Pre-ATP-grasp domain PP4_RS08620 37cb3a30489d82e6ea4be4eaa3ed96ca 650 Pfam PF00364 Biotin-requiring enzyme 584 648 1.4E-17 T 22-04-2016 IPR000089 Biotin/lipoyl attachment PP4_RS08620 37cb3a30489d82e6ea4be4eaa3ed96ca 650 SUPERFAMILY SSF52440 5 117 1.94E-42 T 22-04-2016 IPR016185 Pre-ATP-grasp domain PP4_RS08620 37cb3a30489d82e6ea4be4eaa3ed96ca 650 SUPERFAMILY SSF51246 336 453 1.26E-39 T 22-04-2016 IPR011054 Rudiment single hybrid motif PP4_RS08620 37cb3a30489d82e6ea4be4eaa3ed96ca 650 SUPERFAMILY SSF51230 572 648 1.57E-21 T 22-04-2016 IPR011053 Single hybrid motif PP4_RS08620 37cb3a30489d82e6ea4be4eaa3ed96ca 650 SMART SM01209 118 297 0.01 T 22-04-2016 PP4_RS08620 37cb3a30489d82e6ea4be4eaa3ed96ca 650 Gene3D G3DSA:3.30.470.20 209 453 1.8E-104 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PP4_RS08620 37cb3a30489d82e6ea4be4eaa3ed96ca 650 SMART SM00878 340 447 1.8E-56 T 22-04-2016 IPR005482 Biotin carboxylase, C-terminal PP4_RS08620 37cb3a30489d82e6ea4be4eaa3ed96ca 650 Gene3D G3DSA:3.30.1490.20 133 206 3.7E-31 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 PP4_RS08620 37cb3a30489d82e6ea4be4eaa3ed96ca 650 PANTHER PTHR18866 3 650 0.0 T 22-04-2016 PP4_RS02275 66a8cb336695a039edbee7e91f1e625d 272 Pfam PF13419 Haloacid dehalogenase-like hydrolase 16 199 4.5E-34 T 22-04-2016 IPR023214 HAD-like domain PP4_RS02275 66a8cb336695a039edbee7e91f1e625d 272 TIGRFAM TIGR01449 PGP_bact: phosphoglycolate phosphatase, bacterial 16 226 7.2E-68 T 22-04-2016 IPR006346 2-phosphoglycolate phosphatase, prokaryotic GO:0008967|GO:0046295 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181|UniPathway: UPA00865 PP4_RS02275 66a8cb336695a039edbee7e91f1e625d 272 PANTHER PTHR18901 14 262 7.9E-75 T 22-04-2016 PP4_RS02275 66a8cb336695a039edbee7e91f1e625d 272 Gene3D G3DSA:1.10.150.240 30 95 3.2E-24 T 22-04-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 PP4_RS02275 66a8cb336695a039edbee7e91f1e625d 272 Hamap MF_00495 Phosphoglycolate phosphatase [gph]. 13 230 36.038 T 22-04-2016 IPR006346 2-phosphoglycolate phosphatase, prokaryotic GO:0008967|GO:0046295 KEGG: 00630+3.1.3.18|MetaCyc: PWY-181|UniPathway: UPA00865 PP4_RS02275 66a8cb336695a039edbee7e91f1e625d 272 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 97 199 1.1E-11 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PP4_RS02275 66a8cb336695a039edbee7e91f1e625d 272 SUPERFAMILY SSF56784 13 226 3.87E-57 T 22-04-2016 IPR023214 HAD-like domain PP4_RS02275 66a8cb336695a039edbee7e91f1e625d 272 Gene3D G3DSA:3.40.50.1000 14 29 5.8E-41 T 22-04-2016 IPR023214 HAD-like domain PP4_RS02275 66a8cb336695a039edbee7e91f1e625d 272 Gene3D G3DSA:3.40.50.1000 96 226 5.8E-41 T 22-04-2016 IPR023214 HAD-like domain PP4_RS02275 66a8cb336695a039edbee7e91f1e625d 272 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 13 24 9.7E-10 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PP4_RS02275 66a8cb336695a039edbee7e91f1e625d 272 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 162 182 9.7E-10 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PP4_RS02275 66a8cb336695a039edbee7e91f1e625d 272 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 113 126 9.7E-10 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PP4_RS02275 66a8cb336695a039edbee7e91f1e625d 272 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 144 160 9.7E-10 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PP4_RS02275 66a8cb336695a039edbee7e91f1e625d 272 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 114 194 1.4E-7 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PP4_RS02275 66a8cb336695a039edbee7e91f1e625d 272 PANTHER PTHR18901:SF14 14 262 7.9E-75 T 22-04-2016 PP4_RS08360 7312fcd187f63b9b45930a8936794f70 441 Gene3D G3DSA:3.20.20.60 6 423 2.6E-168 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PP4_RS08360 7312fcd187f63b9b45930a8936794f70 441 ProSitePatterns PS00161 Isocitrate lyase signature. 201 206 - T 22-04-2016 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824|GO:0008152 PP4_RS08360 7312fcd187f63b9b45930a8936794f70 441 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 10 263 5.6E-112 T 22-04-2016 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969|UniPathway: UPA00703 PP4_RS08360 7312fcd187f63b9b45930a8936794f70 441 TIGRFAM TIGR01346 isocit_lyase: isocitrate lyase 264 440 5.0E-85 T 22-04-2016 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969|UniPathway: UPA00703 PP4_RS08360 7312fcd187f63b9b45930a8936794f70 441 PIRSF PIRSF001362 1 441 1.9E-227 T 22-04-2016 PP4_RS08360 7312fcd187f63b9b45930a8936794f70 441 Pfam PF00463 Isocitrate lyase family 14 263 3.1E-60 T 22-04-2016 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969|UniPathway: UPA00703 PP4_RS08360 7312fcd187f63b9b45930a8936794f70 441 Pfam PF00463 Isocitrate lyase family 265 440 2.0E-49 T 22-04-2016 IPR006254 Isocitrate lyase GO:0004451|GO:0019752 KEGG: 00630+4.1.3.1|MetaCyc: PWY-6969|UniPathway: UPA00703 PP4_RS08360 7312fcd187f63b9b45930a8936794f70 441 SUPERFAMILY SSF51621 7 440 1.08E-155 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PP4_RS08360 7312fcd187f63b9b45930a8936794f70 441 PANTHER PTHR21631 3 441 8.2E-175 T 22-04-2016 PP4_RS12390 af8b680095e75c6297aa58ee2c87ccf0 238 PANTHER PTHR38033:SF1 20 237 1.1E-24 T 22-04-2016 PP4_RS12390 af8b680095e75c6297aa58ee2c87ccf0 238 Pfam PF09850 Type VI secretion system protein DotU 20 219 6.5E-53 T 22-04-2016 IPR017732 Type IV / VI secretion system, DotU PP4_RS12390 af8b680095e75c6297aa58ee2c87ccf0 238 PANTHER PTHR38033 20 237 1.1E-24 T 22-04-2016 PP4_RS12390 af8b680095e75c6297aa58ee2c87ccf0 238 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 19 225 5.2E-62 T 22-04-2016 IPR017732 Type IV / VI secretion system, DotU PP4_RS17980 4c3ca3ff593e888682e2083a8af18fe5 400 Gene3D G3DSA:1.20.1250.20 21 204 4.0E-28 T 22-04-2016 PP4_RS17980 4c3ca3ff593e888682e2083a8af18fe5 400 Gene3D G3DSA:1.20.1250.20 245 399 7.8E-21 T 22-04-2016 PP4_RS17980 4c3ca3ff593e888682e2083a8af18fe5 400 ProSitePatterns PS00216 Sugar transport proteins signature 1. 280 296 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PP4_RS17980 4c3ca3ff593e888682e2083a8af18fe5 400 Pfam PF07690 Major Facilitator Superfamily 27 263 5.1E-23 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS17980 4c3ca3ff593e888682e2083a8af18fe5 400 SUPERFAMILY SSF103473 20 399 2.88E-58 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS17980 4c3ca3ff593e888682e2083a8af18fe5 400 PANTHER PTHR23518 1 400 1.1E-114 T 22-04-2016 PP4_RS17980 4c3ca3ff593e888682e2083a8af18fe5 400 PANTHER PTHR23518:SF2 1 400 1.1E-114 T 22-04-2016 PP4_RS14385 ea0fde62fcb30ad9255a68ce66f16118 262 SUPERFAMILY SSF46689 211 258 1.36E-9 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS14385 ea0fde62fcb30ad9255a68ce66f16118 262 PANTHER PTHR11019:SF75 29 260 1.1E-45 T 22-04-2016 PP4_RS14385 ea0fde62fcb30ad9255a68ce66f16118 262 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 211 252 - T 22-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PP4_RS14385 ea0fde62fcb30ad9255a68ce66f16118 262 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 159 203 - T 22-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PP4_RS14385 ea0fde62fcb30ad9255a68ce66f16118 262 SUPERFAMILY SSF51215 28 127 2.09E-16 T 22-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PP4_RS14385 ea0fde62fcb30ad9255a68ce66f16118 262 Gene3D G3DSA:2.60.120.280 29 129 4.4E-12 T 22-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PP4_RS14385 ea0fde62fcb30ad9255a68ce66f16118 262 Gene3D G3DSA:1.10.10.60 212 258 8.5E-14 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS14385 ea0fde62fcb30ad9255a68ce66f16118 262 Pfam PF12833 Helix-turn-helix domain 181 257 5.1E-22 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS14385 ea0fde62fcb30ad9255a68ce66f16118 262 Pfam PF02311 AraC-like ligand binding domain 29 131 8.4E-14 T 22-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PP4_RS14385 ea0fde62fcb30ad9255a68ce66f16118 262 SUPERFAMILY SSF46689 157 208 2.86E-13 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS14385 ea0fde62fcb30ad9255a68ce66f16118 262 Gene3D G3DSA:1.10.10.60 154 211 3.0E-17 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS14385 ea0fde62fcb30ad9255a68ce66f16118 262 PANTHER PTHR11019 29 260 1.1E-45 T 22-04-2016 PP4_RS14385 ea0fde62fcb30ad9255a68ce66f16118 262 SMART SM00342 174 256 5.2E-30 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS08210 a9db7b451832f2b98f16b70a89348d4b 611 SUPERFAMILY SSF53850 53 596 2.53E-128 T 22-04-2016 PP4_RS08210 a9db7b451832f2b98f16b70a89348d4b 611 PANTHER PTHR30290:SF2 1 358 2.8E-225 T 22-04-2016 PP4_RS08210 a9db7b451832f2b98f16b70a89348d4b 611 PANTHER PTHR30290:SF2 385 603 2.8E-225 T 22-04-2016 PP4_RS08210 a9db7b451832f2b98f16b70a89348d4b 611 PANTHER PTHR30290 1 358 2.8E-225 T 22-04-2016 PP4_RS08210 a9db7b451832f2b98f16b70a89348d4b 611 PANTHER PTHR30290 385 603 2.8E-225 T 22-04-2016 PP4_RS08210 a9db7b451832f2b98f16b70a89348d4b 611 Gene3D G3DSA:3.90.76.10 68 219 4.9E-33 T 22-04-2016 PP4_RS08210 a9db7b451832f2b98f16b70a89348d4b 611 PIRSF PIRSF002741 10 597 2.6E-109 T 22-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 PP4_RS08210 a9db7b451832f2b98f16b70a89348d4b 611 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 107 510 3.7E-76 T 22-04-2016 IPR000914 Solute-binding protein family 5 domain PP4_RS08210 a9db7b451832f2b98f16b70a89348d4b 611 Gene3D G3DSA:3.10.105.10 310 564 6.4E-52 T 22-04-2016 PP4_RS04970 4a0065c19717cb35bf53f5daff10eb57 193 Gene3D G3DSA:1.10.10.10 123 188 1.4E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS04970 4a0065c19717cb35bf53f5daff10eb57 193 SUPERFAMILY SSF88659 124 187 2.8E-17 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS04970 4a0065c19717cb35bf53f5daff10eb57 193 PANTHER PTHR30173 1 187 4.4E-56 T 22-04-2016 PP4_RS04970 4a0065c19717cb35bf53f5daff10eb57 193 SUPERFAMILY SSF88946 1 108 4.87E-33 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS04970 4a0065c19717cb35bf53f5daff10eb57 193 ProSitePatterns PS01063 Sigma-70 factors ECF subfamily signature. 47 78 - T 22-04-2016 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS04970 4a0065c19717cb35bf53f5daff10eb57 193 TIGRFAM TIGR02939 RpoE_Sigma70: RNA polymerase sigma factor RpoE 3 190 2.4E-97 T 22-04-2016 IPR014286 RNA polymerase sigma-70 RpoE type GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS04970 4a0065c19717cb35bf53f5daff10eb57 193 PANTHER PTHR30173:SF1 1 187 4.4E-56 T 22-04-2016 PP4_RS04970 4a0065c19717cb35bf53f5daff10eb57 193 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 21 186 6.4E-30 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS04970 4a0065c19717cb35bf53f5daff10eb57 193 Gene3D G3DSA:1.10.1740.10 2 111 2.5E-38 T 22-04-2016 PP4_RS04970 4a0065c19717cb35bf53f5daff10eb57 193 Pfam PF04542 Sigma-70 region 2 25 92 9.1E-18 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS04970 4a0065c19717cb35bf53f5daff10eb57 193 Pfam PF08281 Sigma-70, region 4 132 181 2.2E-18 T 22-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS06475 dcc1ca2070e7f0613065d292a9095369 156 PRINTS PR01483 Fatty acid synthase signature 26 48 2.8E-6 T 22-04-2016 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 PP4_RS06475 dcc1ca2070e7f0613065d292a9095369 156 PRINTS PR01483 Fatty acid synthase signature 48 69 2.8E-6 T 22-04-2016 IPR003965 Fatty acid synthase GO:0004312|GO:0005835|GO:0006633|GO:0055114 PP4_RS06475 dcc1ca2070e7f0613065d292a9095369 156 SUPERFAMILY SSF54637 5 142 8.92E-40 T 22-04-2016 IPR029069 HotDog domain PP4_RS06475 dcc1ca2070e7f0613065d292a9095369 156 Pfam PF01575 MaoC like domain 17 115 2.6E-26 T 22-04-2016 IPR002539 MaoC-like domain PP4_RS06475 dcc1ca2070e7f0613065d292a9095369 156 PANTHER PTHR13078 9 130 1.4E-37 T 22-04-2016 PP4_RS06475 dcc1ca2070e7f0613065d292a9095369 156 Gene3D G3DSA:3.10.129.10 9 138 2.7E-44 T 22-04-2016 IPR029069 HotDog domain PP4_RS17725 c588a891320f144eea98dff354a98902 266 SUPERFAMILY SSF161098 7 265 5.79E-61 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS17725 c588a891320f144eea98dff354a98902 266 Gene3D G3DSA:1.10.3720.10 7 253 5.1E-53 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS17725 c588a891320f144eea98dff354a98902 266 PANTHER PTHR32243 7 266 1.0E-86 T 22-04-2016 PP4_RS17725 c588a891320f144eea98dff354a98902 266 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 255 3.1E-11 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS17725 c588a891320f144eea98dff354a98902 266 PANTHER PTHR32243:SF18 7 266 1.0E-86 T 22-04-2016 PP4_RS18700 515ddb4c5da6e0cbb1af78ac92cf3b50 146 PANTHER PTHR31964 1 141 1.4E-31 T 22-04-2016 PP4_RS18700 515ddb4c5da6e0cbb1af78ac92cf3b50 146 SUPERFAMILY SSF52402 3 141 3.35E-35 T 22-04-2016 PP4_RS18700 515ddb4c5da6e0cbb1af78ac92cf3b50 146 Pfam PF00582 Universal stress protein family 3 141 2.7E-32 T 22-04-2016 IPR006016 UspA GO:0006950 PP4_RS18700 515ddb4c5da6e0cbb1af78ac92cf3b50 146 Gene3D G3DSA:3.40.50.620 3 144 2.9E-40 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS18700 515ddb4c5da6e0cbb1af78ac92cf3b50 146 PRINTS PR01438 Universal stress protein signature 3 21 2.9E-14 T 22-04-2016 IPR006015 Universal stress protein A PP4_RS18700 515ddb4c5da6e0cbb1af78ac92cf3b50 146 PRINTS PR01438 Universal stress protein signature 102 114 2.9E-14 T 22-04-2016 IPR006015 Universal stress protein A PP4_RS18700 515ddb4c5da6e0cbb1af78ac92cf3b50 146 PRINTS PR01438 Universal stress protein signature 119 141 2.9E-14 T 22-04-2016 IPR006015 Universal stress protein A PP4_RS18700 515ddb4c5da6e0cbb1af78ac92cf3b50 146 PANTHER PTHR31964:SF42 1 141 1.4E-31 T 22-04-2016 PP4_RS18700 515ddb4c5da6e0cbb1af78ac92cf3b50 146 PIRSF PIRSF006276 1 144 2.8E-48 T 22-04-2016 IPR006015 Universal stress protein A PP4_RS25135 614754f87b0dd9850bc02b1c88f6075e 248 Gene3D G3DSA:3.30.565.40 42 153 6.3E-8 T 22-04-2016 IPR025303 Domain of unknown function DUF4163 PP4_RS25135 614754f87b0dd9850bc02b1c88f6075e 248 Gene3D G3DSA:3.90.640.20 157 243 4.6E-14 T 22-04-2016 IPR021729 Domain of unknown function DUF3298 PP4_RS25135 614754f87b0dd9850bc02b1c88f6075e 248 Pfam PF11738 Protein of unknown function (DUF3298) 157 232 2.4E-8 T 22-04-2016 IPR021729 Domain of unknown function DUF3298 PP4_RS20390 270934bfa66f542b1a91eedc0b2c1f9e 717 Gene3D G3DSA:2.30.30.60 554 598 1.4E-11 T 22-04-2016 PP4_RS20390 270934bfa66f542b1a91eedc0b2c1f9e 717 SUPERFAMILY SSF82861 451 534 1.28E-14 T 22-04-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 PP4_RS20390 270934bfa66f542b1a91eedc0b2c1f9e 717 Pfam PF00924 Mechanosensitive ion channel 493 692 2.6E-40 T 22-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 PP4_RS20390 270934bfa66f542b1a91eedc0b2c1f9e 717 PANTHER PTHR30460 45 707 6.3E-170 T 22-04-2016 PP4_RS20390 270934bfa66f542b1a91eedc0b2c1f9e 717 SUPERFAMILY SSF50182 536 599 3.92E-12 T 22-04-2016 IPR010920 LSM domain PP4_RS20390 270934bfa66f542b1a91eedc0b2c1f9e 717 SUPERFAMILY SSF82689 600 701 1.03E-13 T 22-04-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 PP4_RS20390 270934bfa66f542b1a91eedc0b2c1f9e 717 PANTHER PTHR30460:SF0 45 707 6.3E-170 T 22-04-2016 PP4_RS20390 270934bfa66f542b1a91eedc0b2c1f9e 717 Gene3D G3DSA:3.30.70.100 608 690 1.8E-4 T 22-04-2016 PP4_RS07000 f6e013eaf6591e6752c7d45d56ba0658 250 PANTHER PTHR36307 74 250 2.7E-43 T 22-04-2016 PP4_RS07000 f6e013eaf6591e6752c7d45d56ba0658 250 Pfam PF13144 Chaperone for flagella basal body P-ring formation 51 248 2.2E-62 T 22-04-2016 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal PP4_RS07000 f6e013eaf6591e6752c7d45d56ba0658 250 SMART SM00858 125 187 3.9E-9 T 22-04-2016 IPR013974 SAF domain PP4_RS07000 f6e013eaf6591e6752c7d45d56ba0658 250 TIGRFAM TIGR03170 flgA_cterm: flagella basal body P-ring formation protein FlgA 113 248 1.3E-42 T 22-04-2016 IPR017585 Flagella basal body P-ring formation protein FlgA, C-terminal PP4_RS03015 ae9541bd0d12b72a653a7e4062cf8b24 313 Pfam PF01882 Protein of unknown function DUF58 50 134 4.4E-21 T 22-04-2016 IPR002881 Domain of unknown function DUF58 PP4_RS03015 ae9541bd0d12b72a653a7e4062cf8b24 313 PANTHER PTHR33608:SF6 15 313 9.8E-74 T 22-04-2016 PP4_RS03015 ae9541bd0d12b72a653a7e4062cf8b24 313 PANTHER PTHR33608 15 313 9.8E-74 T 22-04-2016 PP4_RS03015 ae9541bd0d12b72a653a7e4062cf8b24 313 SUPERFAMILY SSF53300 86 244 4.73E-5 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS11125 339599182d9a8353682931d356255273 401 Pfam PF10518 TAT (twin-arginine translocation) pathway signal sequence 11 32 2.0E-6 T 22-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal PP4_RS11125 339599182d9a8353682931d356255273 401 Gene3D G3DSA:3.40.190.10 130 261 9.7E-10 T 22-04-2016 PP4_RS11125 339599182d9a8353682931d356255273 401 PANTHER PTHR30024:SF16 1 282 1.9E-150 T 22-04-2016 PP4_RS11125 339599182d9a8353682931d356255273 401 SUPERFAMILY SSF53213 246 362 3.4E-5 T 22-04-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 PP4_RS11125 339599182d9a8353682931d356255273 401 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 11 29 3.5E-4 T 22-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal PP4_RS11125 339599182d9a8353682931d356255273 401 SUPERFAMILY SSF53850 44 277 4.89E-37 T 22-04-2016 PP4_RS11125 339599182d9a8353682931d356255273 401 PANTHER PTHR30024 1 282 1.9E-150 T 22-04-2016 PP4_RS11125 339599182d9a8353682931d356255273 401 Pfam PF13379 NMT1-like family 41 280 1.4E-45 T 22-04-2016 PP4_RS20745 3c0c09ce7c59e3fb52ea7886e55b4c90 463 SUPERFAMILY SSF158472 177 230 7.45E-8 T 22-04-2016 PP4_RS20745 3c0c09ce7c59e3fb52ea7886e55b4c90 463 Pfam PF00512 His Kinase A (phospho-acceptor) domain 233 291 6.8E-10 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS20745 3c0c09ce7c59e3fb52ea7886e55b4c90 463 Pfam PF16750 Sensor domain of 2-component histidine kinase 39 148 1.2E-38 T 22-04-2016 IPR031930 2-component histidine kinase, sensor domain PP4_RS20745 3c0c09ce7c59e3fb52ea7886e55b4c90 463 SMART SM00388 233 292 4.8E-10 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS20745 3c0c09ce7c59e3fb52ea7886e55b4c90 463 SMART SM00304 177 232 1.1E-10 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS20745 3c0c09ce7c59e3fb52ea7886e55b4c90 463 Gene3D G3DSA:3.30.565.10 278 446 1.6E-33 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS20745 3c0c09ce7c59e3fb52ea7886e55b4c90 463 Pfam PF00672 HAMP domain 161 228 1.8E-11 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS20745 3c0c09ce7c59e3fb52ea7886e55b4c90 463 PANTHER PTHR24423 54 70 6.4E-58 T 22-04-2016 PP4_RS20745 3c0c09ce7c59e3fb52ea7886e55b4c90 463 PANTHER PTHR24423 171 454 6.4E-58 T 22-04-2016 PP4_RS20745 3c0c09ce7c59e3fb52ea7886e55b4c90 463 PRINTS PR00344 Bacterial sensor protein C-terminal signature 374 388 1.8E-8 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS20745 3c0c09ce7c59e3fb52ea7886e55b4c90 463 PRINTS PR00344 Bacterial sensor protein C-terminal signature 392 402 1.8E-8 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS20745 3c0c09ce7c59e3fb52ea7886e55b4c90 463 PRINTS PR00344 Bacterial sensor protein C-terminal signature 408 426 1.8E-8 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS20745 3c0c09ce7c59e3fb52ea7886e55b4c90 463 SMART SM00387 337 447 1.6E-25 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS20745 3c0c09ce7c59e3fb52ea7886e55b4c90 463 SUPERFAMILY SSF55874 282 449 1.07E-34 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS20745 3c0c09ce7c59e3fb52ea7886e55b4c90 463 SUPERFAMILY SSF47384 216 291 2.55E-11 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS20745 3c0c09ce7c59e3fb52ea7886e55b4c90 463 PANTHER PTHR24423:SF477 54 70 6.4E-58 T 22-04-2016 PP4_RS20745 3c0c09ce7c59e3fb52ea7886e55b4c90 463 PANTHER PTHR24423:SF477 171 454 6.4E-58 T 22-04-2016 PP4_RS20745 3c0c09ce7c59e3fb52ea7886e55b4c90 463 Gene3D G3DSA:1.10.287.130 223 277 4.8E-11 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS20745 3c0c09ce7c59e3fb52ea7886e55b4c90 463 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 340 445 4.4E-15 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS19780 00fe53dbe562f22fe3b9f75fb3b6bb00 190 Gene3D G3DSA:2.40.50.140 65 129 4.0E-14 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS19780 00fe53dbe562f22fe3b9f75fb3b6bb00 190 Pfam PF09285 Elongation factor P, C-terminal 131 187 3.4E-16 T 22-04-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 PP4_RS19780 00fe53dbe562f22fe3b9f75fb3b6bb00 190 Gene3D G3DSA:2.30.30.30 1 62 1.7E-21 T 22-04-2016 IPR014722 Ribosomal protein L2 domain 2 PP4_RS19780 00fe53dbe562f22fe3b9f75fb3b6bb00 190 SMART SM01185 67 123 9.5E-14 T 22-04-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 PP4_RS19780 00fe53dbe562f22fe3b9f75fb3b6bb00 190 PANTHER PTHR30053 1 189 6.5E-63 T 22-04-2016 PP4_RS19780 00fe53dbe562f22fe3b9f75fb3b6bb00 190 SUPERFAMILY SSF50249 65 131 1.67E-11 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS19780 00fe53dbe562f22fe3b9f75fb3b6bb00 190 Pfam PF01132 Elongation factor P (EF-P) OB domain 68 122 4.7E-13 T 22-04-2016 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 UniPathway: UPA00345 PP4_RS19780 00fe53dbe562f22fe3b9f75fb3b6bb00 190 SMART SM00841 131 187 3.4E-19 T 22-04-2016 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 UniPathway: UPA00345 PP4_RS19780 00fe53dbe562f22fe3b9f75fb3b6bb00 190 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 4 60 2.7E-20 T 22-04-2016 IPR013185 Translation elongation factor, KOW-like UniPathway: UPA00345 PP4_RS19780 00fe53dbe562f22fe3b9f75fb3b6bb00 190 SUPERFAMILY SSF50249 131 187 4.63E-11 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS19780 00fe53dbe562f22fe3b9f75fb3b6bb00 190 PIRSF PIRSF005901 1 189 5.9E-60 T 22-04-2016 IPR020599 Translation elongation factor P/YeiP UniPathway: UPA00345 PP4_RS19780 00fe53dbe562f22fe3b9f75fb3b6bb00 190 Gene3D G3DSA:2.40.50.140 130 188 2.9E-18 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS19780 00fe53dbe562f22fe3b9f75fb3b6bb00 190 Hamap MF_00141 Elongation factor P [efp]. 1 188 44.548 T 22-04-2016 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 UniPathway: UPA00345 PP4_RS19780 00fe53dbe562f22fe3b9f75fb3b6bb00 190 SUPERFAMILY SSF50104 1 62 8.02E-17 T 22-04-2016 IPR008991 Translation protein SH3-like domain PP4_RS00595 ed310b55d502365d2cde4ea193ba8328 284 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 37 262 2.7E-17 T 22-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase PP4_RS00595 ed310b55d502365d2cde4ea193ba8328 284 PANTHER PTHR14859 69 282 1.3E-35 T 22-04-2016 IPR027317 PGAP2-interacting protein PP4_RS00595 ed310b55d502365d2cde4ea193ba8328 284 PANTHER PTHR14859 32 52 1.3E-35 T 22-04-2016 IPR027317 PGAP2-interacting protein PP4_RS00595 ed310b55d502365d2cde4ea193ba8328 284 SUPERFAMILY SSF56219 26 273 7.33E-32 T 22-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase PP4_RS00595 ed310b55d502365d2cde4ea193ba8328 284 Gene3D G3DSA:3.60.10.10 32 212 2.2E-4 T 22-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase PP4_RS00595 ed310b55d502365d2cde4ea193ba8328 284 PANTHER PTHR14859:SF0 69 282 1.3E-35 T 22-04-2016 PP4_RS00595 ed310b55d502365d2cde4ea193ba8328 284 PANTHER PTHR14859:SF0 32 52 1.3E-35 T 22-04-2016 PP4_RS05115 b68c851f17a6ec1098dab863e95acae0 305 Pfam PF03466 LysR substrate binding domain 88 287 1.3E-35 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS05115 b68c851f17a6ec1098dab863e95acae0 305 Gene3D G3DSA:3.40.190.10 89 181 1.4E-18 T 22-04-2016 PP4_RS05115 b68c851f17a6ec1098dab863e95acae0 305 SUPERFAMILY SSF53850 88 287 3.41E-35 T 22-04-2016 PP4_RS05115 b68c851f17a6ec1098dab863e95acae0 305 PANTHER PTHR30126 2 305 1.1E-136 T 22-04-2016 PP4_RS05115 b68c851f17a6ec1098dab863e95acae0 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 2.7E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS05115 b68c851f17a6ec1098dab863e95acae0 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 2.7E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS05115 b68c851f17a6ec1098dab863e95acae0 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 2.7E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS05115 b68c851f17a6ec1098dab863e95acae0 305 Gene3D G3DSA:3.40.190.10 182 257 5.4E-14 T 22-04-2016 PP4_RS05115 b68c851f17a6ec1098dab863e95acae0 305 Gene3D G3DSA:1.10.10.10 2 88 3.9E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS05115 b68c851f17a6ec1098dab863e95acae0 305 SUPERFAMILY SSF46785 2 112 7.52E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS05115 b68c851f17a6ec1098dab863e95acae0 305 PANTHER PTHR30126:SF25 2 305 1.1E-136 T 22-04-2016 PP4_RS05115 b68c851f17a6ec1098dab863e95acae0 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 4.2E-17 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS08395 4c72a0d5547ffd966ab6d46e8036c9d2 416 Gene3D G3DSA:3.90.1150.10 295 414 1.9E-30 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS08395 4c72a0d5547ffd966ab6d46e8036c9d2 416 PANTHER PTHR11986:SF17 1 415 1.4E-147 T 22-04-2016 PP4_RS08395 4c72a0d5547ffd966ab6d46e8036c9d2 416 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 227 264 - T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS08395 4c72a0d5547ffd966ab6d46e8036c9d2 416 Pfam PF00202 Aminotransferase class-III 16 412 1.1E-107 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS08395 4c72a0d5547ffd966ab6d46e8036c9d2 416 SUPERFAMILY SSF53383 13 413 1.16E-116 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS08395 4c72a0d5547ffd966ab6d46e8036c9d2 416 Gene3D G3DSA:3.40.640.10 50 294 8.5E-79 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS08395 4c72a0d5547ffd966ab6d46e8036c9d2 416 PANTHER PTHR11986 1 415 1.4E-147 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS24230 9cab64409e8553d03a99e220e584131f 528 Gene3D G3DSA:3.40.50.970 8 172 2.1E-46 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS24230 9cab64409e8553d03a99e220e584131f 528 Gene3D G3DSA:3.40.50.970 345 523 1.0E-53 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS24230 9cab64409e8553d03a99e220e584131f 528 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 9 169 3.5E-44 T 22-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 PP4_RS24230 9cab64409e8553d03a99e220e584131f 528 PANTHER PTHR18968 8 523 3.1E-224 T 22-04-2016 PP4_RS24230 9cab64409e8553d03a99e220e584131f 528 SUPERFAMILY SSF52467 183 341 7.2E-62 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain PP4_RS24230 9cab64409e8553d03a99e220e584131f 528 Gene3D G3DSA:3.40.50.1220 183 336 3.9E-48 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain PP4_RS24230 9cab64409e8553d03a99e220e584131f 528 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 380 521 1.3E-33 T 22-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 PP4_RS24230 9cab64409e8553d03a99e220e584131f 528 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 193 325 1.0E-19 T 22-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 PP4_RS24230 9cab64409e8553d03a99e220e584131f 528 SUPERFAMILY SSF52518 7 172 1.43E-40 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS24230 9cab64409e8553d03a99e220e584131f 528 SUPERFAMILY SSF52518 352 523 3.4E-51 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS24230 9cab64409e8553d03a99e220e584131f 528 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 411 430 - T 22-04-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 PP4_RS24230 9cab64409e8553d03a99e220e584131f 528 PANTHER PTHR18968:SF133 8 523 3.1E-224 T 22-04-2016 PP4_RS16490 18827db129416eeb34fa7548d9c778ad 315 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 178 303 2.6E-30 T 22-04-2016 IPR013752 Ketopantoate reductase, C-terminal domain GO:0016491|GO:0050661|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 PP4_RS16490 18827db129416eeb34fa7548d9c778ad 315 PANTHER PTHR21708 1 308 6.3E-60 T 22-04-2016 PP4_RS16490 18827db129416eeb34fa7548d9c778ad 315 SUPERFAMILY SSF48179 178 303 2.75E-29 T 22-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PP4_RS16490 18827db129416eeb34fa7548d9c778ad 315 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 152 1.3E-37 T 22-04-2016 IPR013332 Ketopantoate reductase, N-terminal domain GO:0008677|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 PP4_RS16490 18827db129416eeb34fa7548d9c778ad 315 SUPERFAMILY SSF51735 2 184 2.39E-21 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS16490 18827db129416eeb34fa7548d9c778ad 315 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 304 9.0E-73 T 22-04-2016 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0015940|GO:0016491|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 PP4_RS16490 18827db129416eeb34fa7548d9c778ad 315 Gene3D G3DSA:3.40.50.720 2 185 2.4E-50 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS16490 18827db129416eeb34fa7548d9c778ad 315 Gene3D G3DSA:1.10.1040.10 186 305 4.6E-35 T 22-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PP4_RS13040 d3032d4b37510f9284751ad4c9799275 286 PANTHER PTHR30521 75 276 7.9E-45 T 22-04-2016 PP4_RS13040 d3032d4b37510f9284751ad4c9799275 286 PANTHER PTHR30521:SF0 75 276 7.9E-45 T 22-04-2016 PP4_RS13040 d3032d4b37510f9284751ad4c9799275 286 SUPERFAMILY SSF54909 8 277 5.54E-65 T 22-04-2016 IPR011008 Dimeric alpha-beta barrel PP4_RS13040 d3032d4b37510f9284751ad4c9799275 286 TIGRFAM TIGR01413 Dyp_perox_fam: Dyp-type peroxidase family 9 274 1.1E-49 T 22-04-2016 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 KEGG: 00480+1.11.1.- PP4_RS13040 d3032d4b37510f9284751ad4c9799275 286 Pfam PF04261 Dyp-type peroxidase family 46 274 2.0E-31 T 22-04-2016 IPR006314 Dyp-type peroxidase GO:0004601|GO:0020037|GO:0055114 KEGG: 00480+1.11.1.- PP4_RS22475 77f8bd09c8599ec27ea06916556313ce 402 PANTHER PTHR11751 18 398 1.2E-267 T 22-04-2016 PP4_RS22475 77f8bd09c8599ec27ea06916556313ce 402 Pfam PF00155 Aminotransferase class I and II 37 387 9.9E-60 T 22-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PP4_RS22475 77f8bd09c8599ec27ea06916556313ce 402 Gene3D G3DSA:3.40.640.10 50 263 1.5E-62 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS22475 77f8bd09c8599ec27ea06916556313ce 402 SUPERFAMILY SSF53383 9 394 1.02E-107 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS22475 77f8bd09c8599ec27ea06916556313ce 402 Gene3D G3DSA:3.90.1150.10 264 395 4.1E-45 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS22475 77f8bd09c8599ec27ea06916556313ce 402 PANTHER PTHR11751:SF302 18 398 1.2E-267 T 22-04-2016 PP4_RS11595 241a0d3aa37f1ef0c1be673b609af77b 688 Gene3D G3DSA:1.10.287.130 320 370 7.5E-5 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS11595 241a0d3aa37f1ef0c1be673b609af77b 688 SUPERFAMILY SSF55785 65 160 6.66E-8 T 22-04-2016 IPR000014 PAS domain PP4_RS11595 241a0d3aa37f1ef0c1be673b609af77b 688 SMART SM00387 424 546 1.1E-23 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS11595 241a0d3aa37f1ef0c1be673b609af77b 688 Pfam PF00072 Response regulator receiver domain 571 682 2.0E-17 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS11595 241a0d3aa37f1ef0c1be673b609af77b 688 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 425 544 2.8E-13 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS11595 241a0d3aa37f1ef0c1be673b609af77b 688 SMART SM00388 315 383 2.7E-6 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS11595 241a0d3aa37f1ef0c1be673b609af77b 688 Gene3D G3DSA:3.30.450.20 279 319 3.1E-5 T 22-04-2016 PP4_RS11595 241a0d3aa37f1ef0c1be673b609af77b 688 Gene3D G3DSA:3.40.50.2300 568 686 1.5E-31 T 22-04-2016 PP4_RS11595 241a0d3aa37f1ef0c1be673b609af77b 688 PRINTS PR00344 Bacterial sensor protein C-terminal signature 530 543 2.9E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS11595 241a0d3aa37f1ef0c1be673b609af77b 688 PRINTS PR00344 Bacterial sensor protein C-terminal signature 506 524 2.9E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS11595 241a0d3aa37f1ef0c1be673b609af77b 688 PRINTS PR00344 Bacterial sensor protein C-terminal signature 493 503 2.9E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS11595 241a0d3aa37f1ef0c1be673b609af77b 688 PRINTS PR00344 Bacterial sensor protein C-terminal signature 475 489 2.9E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS11595 241a0d3aa37f1ef0c1be673b609af77b 688 PANTHER PTHR24423 38 686 2.6E-165 T 22-04-2016 PP4_RS11595 241a0d3aa37f1ef0c1be673b609af77b 688 Gene3D G3DSA:3.30.565.10 371 548 1.9E-30 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS11595 241a0d3aa37f1ef0c1be673b609af77b 688 SUPERFAMILY SSF55874 374 545 5.76E-33 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS11595 241a0d3aa37f1ef0c1be673b609af77b 688 Gene3D G3DSA:3.30.450.20 150 278 4.7E-7 T 22-04-2016 PP4_RS11595 241a0d3aa37f1ef0c1be673b609af77b 688 Pfam PF00512 His Kinase A (phospho-acceptor) domain 317 381 3.7E-7 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS11595 241a0d3aa37f1ef0c1be673b609af77b 688 SUPERFAMILY SSF52172 569 687 2.85E-26 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS11595 241a0d3aa37f1ef0c1be673b609af77b 688 SUPERFAMILY SSF47384 307 381 5.69E-10 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS11595 241a0d3aa37f1ef0c1be673b609af77b 688 SMART SM00448 569 682 7.9E-29 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS11595 241a0d3aa37f1ef0c1be673b609af77b 688 Gene3D G3DSA:3.30.450.20 33 149 1.1E-12 T 22-04-2016 PP4_RS11595 241a0d3aa37f1ef0c1be673b609af77b 688 PANTHER PTHR24423:SF527 38 686 2.6E-165 T 22-04-2016 PP4_RS11595 241a0d3aa37f1ef0c1be673b609af77b 688 SUPERFAMILY SSF55785 148 291 4.0E-5 T 22-04-2016 IPR000014 PAS domain PP4_RS11595 241a0d3aa37f1ef0c1be673b609af77b 688 Pfam PF08448 PAS fold 64 153 5.1E-7 T 22-04-2016 IPR013656 PAS fold-4 PP4_RS11595 241a0d3aa37f1ef0c1be673b609af77b 688 Pfam PF08448 PAS fold 183 294 1.4E-18 T 22-04-2016 IPR013656 PAS fold-4 PP4_RS14510 4d8b60b6baa093f8e35a4ae5868aae47 567 Gene3D G3DSA:3.90.1300.10 2 564 1.1E-115 T 22-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PP4_RS14510 4d8b60b6baa093f8e35a4ae5868aae47 567 SUPERFAMILY SSF75304 1 561 8.76E-86 T 22-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PP4_RS14510 4d8b60b6baa093f8e35a4ae5868aae47 567 PANTHER PTHR11895:SF8 317 561 5.6E-200 T 22-04-2016 PP4_RS14510 4d8b60b6baa093f8e35a4ae5868aae47 567 PANTHER PTHR11895:SF8 1 296 5.6E-200 T 22-04-2016 PP4_RS14510 4d8b60b6baa093f8e35a4ae5868aae47 567 PANTHER PTHR11895 317 561 5.6E-200 T 22-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PP4_RS14510 4d8b60b6baa093f8e35a4ae5868aae47 567 PANTHER PTHR11895 1 296 5.6E-200 T 22-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PP4_RS14510 4d8b60b6baa093f8e35a4ae5868aae47 567 Pfam PF01425 Amidase 464 544 1.2E-5 T 22-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PP4_RS14510 4d8b60b6baa093f8e35a4ae5868aae47 567 Pfam PF01425 Amidase 25 288 1.0E-43 T 22-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PP4_RS10850 4b9e21914bf2afa63d4015121bbba08f 216 Pfam PF00857 Isochorismatase family 7 198 2.9E-18 T 22-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PP4_RS10850 4b9e21914bf2afa63d4015121bbba08f 216 PANTHER PTHR11080 8 205 1.4E-24 T 22-04-2016 PP4_RS10850 4b9e21914bf2afa63d4015121bbba08f 216 Gene3D G3DSA:3.40.50.850 7 204 2.7E-34 T 22-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PP4_RS10850 4b9e21914bf2afa63d4015121bbba08f 216 PANTHER PTHR11080:SF2 8 205 1.4E-24 T 22-04-2016 PP4_RS10850 4b9e21914bf2afa63d4015121bbba08f 216 SUPERFAMILY SSF52499 2 204 1.02E-26 T 22-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PP4_RS08100 735adb6373ca66f364f870eac9b69d4b 115 Pfam PF14333 Domain of unknown function (DUF4389) 10 85 7.8E-29 T 22-04-2016 IPR025498 Protein of unknown function DUF4389 PP4_RS12600 93c8b53b78c483d0526c9a6bad1540a3 206 PANTHER PTHR35369 1 200 3.6E-74 T 22-04-2016 PP4_RS12600 93c8b53b78c483d0526c9a6bad1540a3 206 Gene3D G3DSA:3.40.50.300 50 162 8.0E-44 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS12600 93c8b53b78c483d0526c9a6bad1540a3 206 PIRSF PIRSF037290 4 204 8.2E-80 T 22-04-2016 IPR017166 Uncharacterised conserved protein UCP037290 PP4_RS12600 93c8b53b78c483d0526c9a6bad1540a3 206 SUPERFAMILY SSF52540 50 162 1.49E-34 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS12600 93c8b53b78c483d0526c9a6bad1540a3 206 PANTHER PTHR35369:SF1 1 200 3.6E-74 T 22-04-2016 PP4_RS09985 303fd81dfe50b02cc86f9dcb1791776a 303 SUPERFAMILY SSF46785 9 114 1.44E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS09985 303fd81dfe50b02cc86f9dcb1791776a 303 PANTHER PTHR30537:SF12 1 295 1.3E-108 T 22-04-2016 PP4_RS09985 303fd81dfe50b02cc86f9dcb1791776a 303 SUPERFAMILY SSF53850 89 297 4.16E-45 T 22-04-2016 PP4_RS09985 303fd81dfe50b02cc86f9dcb1791776a 303 Gene3D G3DSA:1.10.10.10 9 88 5.1E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS09985 303fd81dfe50b02cc86f9dcb1791776a 303 Gene3D G3DSA:3.40.190.10 94 179 2.5E-24 T 22-04-2016 PP4_RS09985 303fd81dfe50b02cc86f9dcb1791776a 303 Gene3D G3DSA:3.40.190.10 180 260 2.2E-23 T 22-04-2016 PP4_RS09985 303fd81dfe50b02cc86f9dcb1791776a 303 Pfam PF03466 LysR substrate binding domain 90 295 3.3E-41 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS09985 303fd81dfe50b02cc86f9dcb1791776a 303 PANTHER PTHR30537 1 295 1.3E-108 T 22-04-2016 PP4_RS09985 303fd81dfe50b02cc86f9dcb1791776a 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 66 6.5E-19 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS24025 ff673266779987379f4198e6656f780a 315 PANTHER PTHR11019 35 305 1.1E-76 T 22-04-2016 PP4_RS24025 ff673266779987379f4198e6656f780a 315 SUPERFAMILY SSF46689 250 296 3.76E-8 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS24025 ff673266779987379f4198e6656f780a 315 Gene3D G3DSA:1.10.10.60 195 251 6.2E-16 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS24025 ff673266779987379f4198e6656f780a 315 SUPERFAMILY SSF46689 198 247 8.96E-10 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS24025 ff673266779987379f4198e6656f780a 315 Pfam PF06719 AraC-type transcriptional regulator N-terminus 35 184 6.8E-41 T 22-04-2016 IPR009594 Transcription regulator HTH, AraC, N-terminal PP4_RS24025 ff673266779987379f4198e6656f780a 315 PANTHER PTHR11019:SF81 35 305 1.1E-76 T 22-04-2016 PP4_RS24025 ff673266779987379f4198e6656f780a 315 Pfam PF12833 Helix-turn-helix domain 220 294 3.8E-18 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS24025 ff673266779987379f4198e6656f780a 315 SMART SM00342 214 297 1.3E-21 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS24025 ff673266779987379f4198e6656f780a 315 Gene3D G3DSA:1.10.10.60 252 294 1.3E-9 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS08715 830accfe577f168f8b57fa0de60ab086 501 SUPERFAMILY SSF51735 6 202 1.73E-54 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS08715 830accfe577f168f8b57fa0de60ab086 501 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 231 248 1.2E-45 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS08715 830accfe577f168f8b57fa0de60ab086 501 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 155 168 1.2E-45 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS08715 830accfe577f168f8b57fa0de60ab086 501 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 249 265 1.2E-45 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS08715 830accfe577f168f8b57fa0de60ab086 501 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 340 366 1.2E-45 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS08715 830accfe577f168f8b57fa0de60ab086 501 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 179 207 1.2E-45 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS08715 830accfe577f168f8b57fa0de60ab086 501 SUPERFAMILY SSF55347 189 498 2.62E-107 T 22-04-2016 PP4_RS08715 830accfe577f168f8b57fa0de60ab086 501 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 189 195 - T 22-04-2016 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS08715 830accfe577f168f8b57fa0de60ab086 501 Gene3D G3DSA:3.40.50.720 10 198 3.0E-59 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS08715 830accfe577f168f8b57fa0de60ab086 501 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 202 498 5.4E-109 T 22-04-2016 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS08715 830accfe577f168f8b57fa0de60ab086 501 PANTHER PTHR23429 10 497 1.2E-207 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS08715 830accfe577f168f8b57fa0de60ab086 501 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 11 499 74.086 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS08715 830accfe577f168f8b57fa0de60ab086 501 Gene3D G3DSA:3.30.360.10 199 498 6.3E-115 T 22-04-2016 PP4_RS08715 830accfe577f168f8b57fa0de60ab086 501 PANTHER PTHR23429:SF0 10 497 1.2E-207 T 22-04-2016 PP4_RS08715 830accfe577f168f8b57fa0de60ab086 501 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 16 199 1.8E-55 T 22-04-2016 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS08715 830accfe577f168f8b57fa0de60ab086 501 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 11 499 3.0E-170 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS08715 830accfe577f168f8b57fa0de60ab086 501 PIRSF PIRSF000110 1 501 3.7E-161 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS27125 c68a3a215dbab0fc4c19675efe3b1018 298 SUPERFAMILY SSF52172 1 130 1.17E-35 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS27125 c68a3a215dbab0fc4c19675efe3b1018 298 PANTHER PTHR26402 4 146 3.6E-37 T 22-04-2016 PP4_RS27125 c68a3a215dbab0fc4c19675efe3b1018 298 SMART SM00448 4 119 5.9E-31 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS27125 c68a3a215dbab0fc4c19675efe3b1018 298 Pfam PF00072 Response regulator receiver domain 6 119 2.3E-27 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS27125 c68a3a215dbab0fc4c19675efe3b1018 298 Gene3D G3DSA:3.40.50.2300 2 130 7.3E-38 T 22-04-2016 PP4_RS23700 76008bc242af0f00efdda7d6cf81ebf8 446 SUPERFAMILY SSF53738 2 180 2.0E-49 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS23700 76008bc242af0f00efdda7d6cf81ebf8 446 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 6 441 1.7E-192 T 22-04-2016 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS23700 76008bc242af0f00efdda7d6cf81ebf8 446 PANTHER PTHR22573:SF15 2 445 1.6E-173 T 22-04-2016 PP4_RS23700 76008bc242af0f00efdda7d6cf81ebf8 446 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 156 253 2.5E-19 T 22-04-2016 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS23700 76008bc242af0f00efdda7d6cf81ebf8 446 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 3 134 2.6E-45 T 22-04-2016 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS23700 76008bc242af0f00efdda7d6cf81ebf8 446 Gene3D G3DSA:3.40.120.10 3 152 1.9E-46 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS23700 76008bc242af0f00efdda7d6cf81ebf8 446 Gene3D G3DSA:3.40.120.10 175 249 9.2E-27 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS23700 76008bc242af0f00efdda7d6cf81ebf8 446 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 372 440 1.9E-12 T 22-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS23700 76008bc242af0f00efdda7d6cf81ebf8 446 Gene3D G3DSA:3.40.120.10 250 366 6.4E-31 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS23700 76008bc242af0f00efdda7d6cf81ebf8 446 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 173 192 1.6E-14 T 22-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS23700 76008bc242af0f00efdda7d6cf81ebf8 446 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 233 248 1.6E-14 T 22-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS23700 76008bc242af0f00efdda7d6cf81ebf8 446 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 94 108 1.6E-14 T 22-04-2016 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS23700 76008bc242af0f00efdda7d6cf81ebf8 446 SUPERFAMILY SSF53738 155 255 2.47E-30 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS23700 76008bc242af0f00efdda7d6cf81ebf8 446 SUPERFAMILY SSF53738 257 364 1.14E-29 T 22-04-2016 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS23700 76008bc242af0f00efdda7d6cf81ebf8 446 Hamap MF_01554_B Phosphoglucosamine mutase [glmM]. 2 444 47.178 T 22-04-2016 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS23700 76008bc242af0f00efdda7d6cf81ebf8 446 PANTHER PTHR22573 2 445 1.6E-173 T 22-04-2016 PP4_RS23700 76008bc242af0f00efdda7d6cf81ebf8 446 Gene3D G3DSA:3.30.310.50 368 444 1.8E-16 T 22-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS23700 76008bc242af0f00efdda7d6cf81ebf8 446 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 95 104 - T 22-04-2016 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS23700 76008bc242af0f00efdda7d6cf81ebf8 446 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 257 364 1.6E-30 T 22-04-2016 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS23700 76008bc242af0f00efdda7d6cf81ebf8 446 SUPERFAMILY SSF55957 357 444 2.49E-18 T 22-04-2016 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 PP4_RS15840 84479adbc096e8f96089f33aaefebe94 316 Pfam PF04168 A predicted alpha-helical domain with a conserved ER motif. 1 313 9.7E-95 T 22-04-2016 IPR007296 Domain of unknown function DUF403 PP4_RS15840 84479adbc096e8f96089f33aaefebe94 316 PANTHER PTHR34595 1 315 2.9E-114 T 22-04-2016 PP4_RS24685 e80431756addf3cba24dd20598c9e7fd 243 PANTHER PTHR21091 4 218 4.5E-74 T 22-04-2016 PP4_RS24685 e80431756addf3cba24dd20598c9e7fd 243 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 7 218 3.5E-47 T 22-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 PP4_RS24685 e80431756addf3cba24dd20598c9e7fd 243 SUPERFAMILY SSF53790 4 238 1.31E-49 T 22-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 PP4_RS24685 e80431756addf3cba24dd20598c9e7fd 243 Gene3D G3DSA:3.40.1010.10 4 136 4.7E-33 T 22-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 PP4_RS24685 e80431756addf3cba24dd20598c9e7fd 243 TIGRFAM TIGR01467 cobI_cbiL: precorrin-2 C(20)-methyltransferase 5 237 1.0E-66 T 22-04-2016 IPR006364 Precorrin-2 C(20)-methyltransferase domain GO:0008757|GO:0009236 PP4_RS24685 e80431756addf3cba24dd20598c9e7fd 243 PIRSF PIRSF036427 4 243 4.3E-71 T 22-04-2016 IPR012382 Precorrin-2 C(20)-methyltransferase GO:0008757|GO:0009236|GO:0030788 PP4_RS24685 e80431756addf3cba24dd20598c9e7fd 243 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 103 135 - T 22-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 PP4_RS24685 e80431756addf3cba24dd20598c9e7fd 243 PANTHER PTHR21091:SF127 4 218 4.5E-74 T 22-04-2016 PP4_RS06950 f007c60d4e77298644bf800ae60a5f69 459 PANTHER PTHR22912 1 452 4.3E-193 T 22-04-2016 PP4_RS06950 f007c60d4e77298644bf800ae60a5f69 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 286 308 5.6E-38 T 22-04-2016 PP4_RS06950 f007c60d4e77298644bf800ae60a5f69 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 136 154 5.6E-38 T 22-04-2016 PP4_RS06950 f007c60d4e77298644bf800ae60a5f69 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 258 274 5.6E-38 T 22-04-2016 PP4_RS06950 f007c60d4e77298644bf800ae60a5f69 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 5.6E-38 T 22-04-2016 PP4_RS06950 f007c60d4e77298644bf800ae60a5f69 459 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 174 192 5.6E-38 T 22-04-2016 PP4_RS06950 f007c60d4e77298644bf800ae60a5f69 459 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 9 459 3.2E-141 T 22-04-2016 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084 PP4_RS06950 f007c60d4e77298644bf800ae60a5f69 459 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 41 51 - T 22-04-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 PP4_RS06950 f007c60d4e77298644bf800ae60a5f69 459 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 9 321 3.7E-74 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS06950 f007c60d4e77298644bf800ae60a5f69 459 Gene3D G3DSA:3.50.50.60 139 327 3.5E-48 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS06950 f007c60d4e77298644bf800ae60a5f69 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 8 30 7.1E-65 T 22-04-2016 PP4_RS06950 f007c60d4e77298644bf800ae60a5f69 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 301 308 7.1E-65 T 22-04-2016 PP4_RS06950 f007c60d4e77298644bf800ae60a5f69 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 139 148 7.1E-65 T 22-04-2016 PP4_RS06950 f007c60d4e77298644bf800ae60a5f69 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 401 416 7.1E-65 T 22-04-2016 PP4_RS06950 f007c60d4e77298644bf800ae60a5f69 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 259 273 7.1E-65 T 22-04-2016 PP4_RS06950 f007c60d4e77298644bf800ae60a5f69 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 174 199 7.1E-65 T 22-04-2016 PP4_RS06950 f007c60d4e77298644bf800ae60a5f69 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 423 443 7.1E-65 T 22-04-2016 PP4_RS06950 f007c60d4e77298644bf800ae60a5f69 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 336 357 7.1E-65 T 22-04-2016 PP4_RS06950 f007c60d4e77298644bf800ae60a5f69 459 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 40 55 7.1E-65 T 22-04-2016 PP4_RS06950 f007c60d4e77298644bf800ae60a5f69 459 SUPERFAMILY SSF55424 339 458 9.28E-32 T 22-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 PP4_RS06950 f007c60d4e77298644bf800ae60a5f69 459 PIRSF PIRSF000350 1 452 6.5E-75 T 22-04-2016 PP4_RS06950 f007c60d4e77298644bf800ae60a5f69 459 Gene3D G3DSA:3.30.390.30 328 458 4.9E-36 T 22-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 PP4_RS06950 f007c60d4e77298644bf800ae60a5f69 459 PANTHER PTHR22912:SF146 1 452 4.3E-193 T 22-04-2016 PP4_RS06950 f007c60d4e77298644bf800ae60a5f69 459 Gene3D G3DSA:3.50.50.60 6 138 2.1E-37 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS06950 f007c60d4e77298644bf800ae60a5f69 459 SUPERFAMILY SSF51905 3 331 8.77E-55 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS06950 f007c60d4e77298644bf800ae60a5f69 459 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 340 449 1.2E-29 T 22-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 PP4_RS01635 6dd77e4d738de1a60d45c61d7248625e 392 ProSitePatterns PS00211 ABC transporters family signature. 168 182 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS01635 6dd77e4d738de1a60d45c61d7248625e 392 TIGRFAM TIGR03415 ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein 4 389 1.2E-189 T 22-04-2016 IPR022473 ABC transporter, Choline, ATP-binding subunit GO:0015220|GO:0015871|GO:0055052 PP4_RS01635 6dd77e4d738de1a60d45c61d7248625e 392 PANTHER PTHR24220 29 383 3.3E-156 T 22-04-2016 PP4_RS01635 6dd77e4d738de1a60d45c61d7248625e 392 PANTHER PTHR24220:SF374 29 383 3.3E-156 T 22-04-2016 PP4_RS01635 6dd77e4d738de1a60d45c61d7248625e 392 Gene3D G3DSA:3.40.50.300 3 268 2.7E-70 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS01635 6dd77e4d738de1a60d45c61d7248625e 392 SUPERFAMILY SSF52540 42 274 2.56E-70 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS01635 6dd77e4d738de1a60d45c61d7248625e 392 Pfam PF00005 ABC transporter 44 195 5.6E-29 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS01635 6dd77e4d738de1a60d45c61d7248625e 392 SMART SM00382 52 253 3.8E-14 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS04845 1f42732c6f7855bedb9be85d0843f28f 585 PANTHER PTHR24423 321 337 9.3E-91 T 22-04-2016 PP4_RS04845 1f42732c6f7855bedb9be85d0843f28f 585 PANTHER PTHR24423 188 295 9.3E-91 T 22-04-2016 PP4_RS04845 1f42732c6f7855bedb9be85d0843f28f 585 PANTHER PTHR24423 29 49 9.3E-91 T 22-04-2016 PP4_RS04845 1f42732c6f7855bedb9be85d0843f28f 585 PANTHER PTHR24423 358 578 9.3E-91 T 22-04-2016 PP4_RS04845 1f42732c6f7855bedb9be85d0843f28f 585 Gene3D G3DSA:1.10.287.130 359 426 7.3E-7 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS04845 1f42732c6f7855bedb9be85d0843f28f 585 Gene3D G3DSA:3.30.450.20 92 183 5.0E-5 T 22-04-2016 PP4_RS04845 1f42732c6f7855bedb9be85d0843f28f 585 PIRSF PIRSF036431 3 583 4.6E-176 T 22-04-2016 IPR017055 Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator) PP4_RS04845 1f42732c6f7855bedb9be85d0843f28f 585 PANTHER PTHR24423:SF485 321 337 9.3E-91 T 22-04-2016 PP4_RS04845 1f42732c6f7855bedb9be85d0843f28f 585 PANTHER PTHR24423:SF485 188 295 9.3E-91 T 22-04-2016 PP4_RS04845 1f42732c6f7855bedb9be85d0843f28f 585 PANTHER PTHR24423:SF485 29 49 9.3E-91 T 22-04-2016 PP4_RS04845 1f42732c6f7855bedb9be85d0843f28f 585 PANTHER PTHR24423:SF485 358 578 9.3E-91 T 22-04-2016 PP4_RS04845 1f42732c6f7855bedb9be85d0843f28f 585 SMART SM00387 472 581 2.1E-27 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS04845 1f42732c6f7855bedb9be85d0843f28f 585 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 472 579 5.5E-19 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS04845 1f42732c6f7855bedb9be85d0843f28f 585 SUPERFAMILY SSF47384 358 426 8.44E-10 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS04845 1f42732c6f7855bedb9be85d0843f28f 585 Pfam PF02743 Cache domain 40 216 3.5E-13 T 22-04-2016 IPR033479 Double Cache domain 1 PP4_RS04845 1f42732c6f7855bedb9be85d0843f28f 585 Pfam PF00512 His Kinase A (phospho-acceptor) domain 362 426 7.8E-8 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS04845 1f42732c6f7855bedb9be85d0843f28f 585 SUPERFAMILY SSF103190 60 193 2.16E-13 T 22-04-2016 IPR029151 Periplasmic sensor domain-like PP4_RS04845 1f42732c6f7855bedb9be85d0843f28f 585 SUPERFAMILY SSF55874 429 579 1.01E-38 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS04845 1f42732c6f7855bedb9be85d0843f28f 585 SMART SM00388 362 430 3.5E-7 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS04845 1f42732c6f7855bedb9be85d0843f28f 585 Gene3D G3DSA:3.30.565.10 434 579 1.0E-37 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS04845 1f42732c6f7855bedb9be85d0843f28f 585 PRINTS PR00344 Bacterial sensor protein C-terminal signature 511 525 1.219562E-11 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS04845 1f42732c6f7855bedb9be85d0843f28f 585 PRINTS PR00344 Bacterial sensor protein C-terminal signature 529 539 1.219562E-11 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS04845 1f42732c6f7855bedb9be85d0843f28f 585 PRINTS PR00344 Bacterial sensor protein C-terminal signature 542 560 1.219562E-11 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS04845 1f42732c6f7855bedb9be85d0843f28f 585 PRINTS PR00344 Bacterial sensor protein C-terminal signature 565 578 1.219562E-11 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS14475 09757d0ff99e3f18dd5a45b46b2df30d 142 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 64 75 5.2E-6 T 22-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 PP4_RS14475 09757d0ff99e3f18dd5a45b46b2df30d 142 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 53 63 5.2E-6 T 22-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 PP4_RS14475 09757d0ff99e3f18dd5a45b46b2df30d 142 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 92 104 5.2E-6 T 22-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 PP4_RS14475 09757d0ff99e3f18dd5a45b46b2df30d 142 Gene3D G3DSA:2.10.109.10 26 140 8.2E-40 T 22-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain PP4_RS14475 09757d0ff99e3f18dd5a45b46b2df30d 142 PANTHER PTHR33516:SF1 16 142 1.7E-37 T 22-04-2016 PP4_RS14475 09757d0ff99e3f18dd5a45b46b2df30d 142 Pfam PF00717 Peptidase S24-like 56 121 4.2E-17 T 22-04-2016 IPR019759 Peptidase S24/S26A/S26B PP4_RS14475 09757d0ff99e3f18dd5a45b46b2df30d 142 SUPERFAMILY SSF51306 15 138 4.71E-35 T 22-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C PP4_RS14475 09757d0ff99e3f18dd5a45b46b2df30d 142 PANTHER PTHR33516 16 142 1.7E-37 T 22-04-2016 PP4_RS16070 010464275de8bd70d80f2c1aeb40f81a 408 PANTHER PTHR23501 15 398 9.2E-82 T 22-04-2016 PP4_RS16070 010464275de8bd70d80f2c1aeb40f81a 408 Gene3D G3DSA:1.20.1250.20 26 206 4.8E-23 T 22-04-2016 PP4_RS16070 010464275de8bd70d80f2c1aeb40f81a 408 Gene3D G3DSA:1.20.1250.20 221 397 8.0E-14 T 22-04-2016 PP4_RS16070 010464275de8bd70d80f2c1aeb40f81a 408 Pfam PF07690 Major Facilitator Superfamily 30 342 1.6E-28 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS16070 010464275de8bd70d80f2c1aeb40f81a 408 SUPERFAMILY SSF103473 17 398 2.62E-51 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS16070 010464275de8bd70d80f2c1aeb40f81a 408 PANTHER PTHR23501:SF4 15 398 9.2E-82 T 22-04-2016 PP4_RS13860 a8bb441179712a83489397a83331504b 454 PANTHER PTHR11785 10 446 1.1E-86 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS13860 a8bb441179712a83489397a83331504b 454 Pfam PF13520 Amino acid permease 15 415 1.6E-35 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS13860 a8bb441179712a83489397a83331504b 454 PIRSF PIRSF006060 1 448 1.0E-54 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS13860 a8bb441179712a83489397a83331504b 454 PANTHER PTHR11785:SF261 10 446 1.1E-86 T 22-04-2016 PP4_RS15555 c1b2a3e02efcc2b2ee679d195c845fd4 162 SUPERFAMILY SSF51182 38 160 1.96E-31 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS15555 c1b2a3e02efcc2b2ee679d195c845fd4 162 PANTHER PTHR33570 28 162 8.4E-46 T 22-04-2016 PP4_RS15555 c1b2a3e02efcc2b2ee679d195c845fd4 162 Pfam PF07883 Cupin domain 70 131 3.6E-12 T 22-04-2016 IPR013096 Cupin 2, conserved barrel PP4_RS15555 c1b2a3e02efcc2b2ee679d195c845fd4 162 PANTHER PTHR33570:SF5 28 162 8.4E-46 T 22-04-2016 PP4_RS15555 c1b2a3e02efcc2b2ee679d195c845fd4 162 Gene3D G3DSA:2.60.120.10 37 159 3.8E-32 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS04085 a61d5f865afeaba1f5dc8399677e36e4 438 PANTHER PTHR11374 1 406 1.4E-238 T 22-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 PP4_RS04085 a61d5f865afeaba1f5dc8399677e36e4 438 SUPERFAMILY SSF48179 204 300 7.48E-28 T 22-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PP4_RS04085 a61d5f865afeaba1f5dc8399677e36e4 438 Gene3D G3DSA:3.40.50.720 235 427 2.8E-43 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS04085 a61d5f865afeaba1f5dc8399677e36e4 438 SUPERFAMILY SSF51735 1 198 1.47E-51 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS04085 a61d5f865afeaba1f5dc8399677e36e4 438 Gene3D G3DSA:3.40.50.720 1 194 2.6E-69 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS04085 a61d5f865afeaba1f5dc8399677e36e4 438 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 205 298 1.7E-29 T 22-04-2016 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 PP4_RS04085 a61d5f865afeaba1f5dc8399677e36e4 438 PIRSF PIRSF500135 1 438 2.9E-249 T 22-04-2016 IPR028358 GDP-mannose 6-dehydrogenase GO:0042121|GO:0047919 KEGG: 00040+1.1.1.13|KEGG: 00051+1.1.1.132|KEGG: 00520+1.1.1.132|MetaCyc: PWY-6073|MetaCyc: PWY-6082|UniPathway: UPA00286 PP4_RS04085 a61d5f865afeaba1f5dc8399677e36e4 438 Gene3D G3DSA:1.20.5.100 203 234 1.0E-13 T 22-04-2016 PP4_RS04085 a61d5f865afeaba1f5dc8399677e36e4 438 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 189 6.4E-65 T 22-04-2016 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 PP4_RS04085 a61d5f865afeaba1f5dc8399677e36e4 438 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 418 4.3E-137 T 22-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 PP4_RS04085 a61d5f865afeaba1f5dc8399677e36e4 438 SMART SM00984 317 425 7.9E-21 T 22-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 PP4_RS04085 a61d5f865afeaba1f5dc8399677e36e4 438 SUPERFAMILY SSF52413 307 424 6.8E-25 T 22-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 PP4_RS04085 a61d5f865afeaba1f5dc8399677e36e4 438 PIRSF PIRSF000124 1 438 2.3E-136 T 22-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 PP4_RS04085 a61d5f865afeaba1f5dc8399677e36e4 438 PANTHER PTHR11374:SF22 1 406 1.4E-238 T 22-04-2016 PP4_RS04085 a61d5f865afeaba1f5dc8399677e36e4 438 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 317 418 1.4E-15 T 22-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 PP4_RS05840 f22d1caffd2dcf88be2dc0ae8f819ff3 571 Hamap MF_01569 Proline--tRNA ligase [proS]. 1 570 41.774 T 22-04-2016 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 PP4_RS05840 f22d1caffd2dcf88be2dc0ae8f819ff3 571 PANTHER PTHR11451 397 571 1.1E-157 T 22-04-2016 PP4_RS05840 f22d1caffd2dcf88be2dc0ae8f819ff3 571 PANTHER PTHR11451 4 244 1.1E-157 T 22-04-2016 PP4_RS05840 f22d1caffd2dcf88be2dc0ae8f819ff3 571 Pfam PF03129 Anticodon binding domain 473 567 6.8E-15 T 22-04-2016 IPR004154 Anticodon-binding PP4_RS05840 f22d1caffd2dcf88be2dc0ae8f819ff3 571 SUPERFAMILY SSF52954 460 569 1.66E-26 T 22-04-2016 IPR004154 Anticodon-binding PP4_RS05840 f22d1caffd2dcf88be2dc0ae8f819ff3 571 Gene3D G3DSA:3.40.50.800 471 569 1.8E-26 T 22-04-2016 IPR004154 Anticodon-binding PP4_RS05840 f22d1caffd2dcf88be2dc0ae8f819ff3 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 144 155 1.6E-19 T 22-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 PP4_RS05840 f22d1caffd2dcf88be2dc0ae8f819ff3 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 1.6E-19 T 22-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 PP4_RS05840 f22d1caffd2dcf88be2dc0ae8f819ff3 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 68 86 1.6E-19 T 22-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 PP4_RS05840 f22d1caffd2dcf88be2dc0ae8f819ff3 571 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 1.6E-19 T 22-04-2016 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 PP4_RS05840 f22d1caffd2dcf88be2dc0ae8f819ff3 571 SUPERFAMILY SSF55681 405 476 2.11E-108 T 22-04-2016 PP4_RS05840 f22d1caffd2dcf88be2dc0ae8f819ff3 571 SUPERFAMILY SSF55681 10 237 2.11E-108 T 22-04-2016 PP4_RS05840 f22d1caffd2dcf88be2dc0ae8f819ff3 571 TIGRFAM TIGR00409 proS_fam_II: proline--tRNA ligase 1 566 2.4E-247 T 22-04-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 PP4_RS05840 f22d1caffd2dcf88be2dc0ae8f819ff3 571 PANTHER PTHR11451:SF3 397 571 1.1E-157 T 22-04-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 PP4_RS05840 f22d1caffd2dcf88be2dc0ae8f819ff3 571 PANTHER PTHR11451:SF3 4 244 1.1E-157 T 22-04-2016 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 PP4_RS05840 f22d1caffd2dcf88be2dc0ae8f819ff3 571 Pfam PF04073 Aminoacyl-tRNA editing domain 257 375 6.8E-23 T 22-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 PP4_RS05840 f22d1caffd2dcf88be2dc0ae8f819ff3 571 Gene3D G3DSA:3.90.960.10 254 386 2.5E-29 T 22-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 PP4_RS05840 f22d1caffd2dcf88be2dc0ae8f819ff3 571 Gene3D G3DSA:3.30.930.10 387 470 1.6E-108 T 22-04-2016 PP4_RS05840 f22d1caffd2dcf88be2dc0ae8f819ff3 571 Gene3D G3DSA:3.30.930.10 12 234 1.6E-108 T 22-04-2016 PP4_RS05840 f22d1caffd2dcf88be2dc0ae8f819ff3 571 PIRSF PIRSF001535 1 571 3.5E-268 T 22-04-2016 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15 PP4_RS05840 f22d1caffd2dcf88be2dc0ae8f819ff3 571 SUPERFAMILY SSF55826 218 388 5.36E-29 T 22-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 PP4_RS05840 f22d1caffd2dcf88be2dc0ae8f819ff3 571 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 95 456 7.8E-50 T 22-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS11120 5c20480340faa2417dee8ef7c5984306 273 PANTHER PTHR24220:SF10 7 266 2.5E-90 T 22-04-2016 PP4_RS11120 5c20480340faa2417dee8ef7c5984306 273 PANTHER PTHR24220 7 266 2.5E-90 T 22-04-2016 PP4_RS11120 5c20480340faa2417dee8ef7c5984306 273 SMART SM00382 34 217 8.9E-17 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS11120 5c20480340faa2417dee8ef7c5984306 273 Gene3D G3DSA:3.40.50.300 3 215 1.7E-60 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS11120 5c20480340faa2417dee8ef7c5984306 273 SUPERFAMILY SSF52540 6 239 3.19E-61 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS11120 5c20480340faa2417dee8ef7c5984306 273 Pfam PF00005 ABC transporter 26 167 6.2E-30 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS11385 fef722bb3f622f4a30a4c2605166863e 1035 PRINTS PR00702 Acriflavin resistance protein family signature 357 378 4.7E-79 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS11385 fef722bb3f622f4a30a4c2605166863e 1035 PRINTS PR00702 Acriflavin resistance protein family signature 330 353 4.7E-79 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS11385 fef722bb3f622f4a30a4c2605166863e 1035 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 4.7E-79 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS11385 fef722bb3f622f4a30a4c2605166863e 1035 PRINTS PR00702 Acriflavin resistance protein family signature 606 620 4.7E-79 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS11385 fef722bb3f622f4a30a4c2605166863e 1035 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 4.7E-79 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS11385 fef722bb3f622f4a30a4c2605166863e 1035 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 4.7E-79 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS11385 fef722bb3f622f4a30a4c2605166863e 1035 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 4.7E-79 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS11385 fef722bb3f622f4a30a4c2605166863e 1035 PRINTS PR00702 Acriflavin resistance protein family signature 542 559 4.7E-79 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS11385 fef722bb3f622f4a30a4c2605166863e 1035 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 4.7E-79 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS11385 fef722bb3f622f4a30a4c2605166863e 1035 Gene3D G3DSA:1.10.3850.10 799 1014 1.4E-52 T 22-04-2016 PP4_RS11385 fef722bb3f622f4a30a4c2605166863e 1035 SUPERFAMILY SSF82714 183 267 1.96E-17 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS11385 fef722bb3f622f4a30a4c2605166863e 1035 SUPERFAMILY SSF82693 137 182 5.93E-22 T 22-04-2016 PP4_RS11385 fef722bb3f622f4a30a4c2605166863e 1035 SUPERFAMILY SSF82693 268 324 5.93E-22 T 22-04-2016 PP4_RS11385 fef722bb3f622f4a30a4c2605166863e 1035 SUPERFAMILY SSF82693 40 129 2.46E-21 T 22-04-2016 PP4_RS11385 fef722bb3f622f4a30a4c2605166863e 1035 PANTHER PTHR32063 1 1034 0.0 T 22-04-2016 PP4_RS11385 fef722bb3f622f4a30a4c2605166863e 1035 Gene3D G3DSA:3.30.70.1430 558 646 1.7E-10 T 22-04-2016 PP4_RS11385 fef722bb3f622f4a30a4c2605166863e 1035 SUPERFAMILY SSF82714 707 790 6.15E-17 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS11385 fef722bb3f622f4a30a4c2605166863e 1035 PANTHER PTHR32063:SF34 1 1034 0.0 T 22-04-2016 PP4_RS11385 fef722bb3f622f4a30a4c2605166863e 1035 Gene3D G3DSA:3.30.2090.10 183 266 7.6E-19 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS11385 fef722bb3f622f4a30a4c2605166863e 1035 Gene3D G3DSA:3.30.2090.10 706 790 2.7E-15 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS11385 fef722bb3f622f4a30a4c2605166863e 1035 SUPERFAMILY SSF82693 555 647 1.44E-14 T 22-04-2016 PP4_RS11385 fef722bb3f622f4a30a4c2605166863e 1035 Gene3D G3DSA:3.30.70.1430 41 142 1.4E-26 T 22-04-2016 PP4_RS11385 fef722bb3f622f4a30a4c2605166863e 1035 Pfam PF00873 AcrB/AcrD/AcrF family 6 1012 0.0 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS11385 fef722bb3f622f4a30a4c2605166863e 1035 SUPERFAMILY SSF82866 290 491 1.57E-48 T 22-04-2016 PP4_RS11385 fef722bb3f622f4a30a4c2605166863e 1035 SUPERFAMILY SSF82866 794 1017 2.49E-45 T 22-04-2016 PP4_RS11385 fef722bb3f622f4a30a4c2605166863e 1035 Gene3D G3DSA:1.20.1640.10 284 498 3.0E-59 T 22-04-2016 PP4_RS20055 c813c96d6c172d1ed1a3351d4bb6917b 356 PANTHER PTHR10366:SF41 2 351 1.4E-170 T 22-04-2016 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 PP4_RS20055 c813c96d6c172d1ed1a3351d4bb6917b 356 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 146 174 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PP4_RS20055 c813c96d6c172d1ed1a3351d4bb6917b 356 Gene3D G3DSA:3.90.25.10 192 348 1.2E-56 T 22-04-2016 PP4_RS20055 c813c96d6c172d1ed1a3351d4bb6917b 356 Gene3D G3DSA:3.40.50.720 1 191 5.7E-64 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS20055 c813c96d6c172d1ed1a3351d4bb6917b 356 Pfam PF16363 GDP-mannose 4,6 dehydratase 4 324 1.6E-103 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS20055 c813c96d6c172d1ed1a3351d4bb6917b 356 PANTHER PTHR10366 2 351 1.4E-170 T 22-04-2016 PP4_RS20055 c813c96d6c172d1ed1a3351d4bb6917b 356 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 3 338 2.8E-154 T 22-04-2016 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688 PP4_RS20055 c813c96d6c172d1ed1a3351d4bb6917b 356 SUPERFAMILY SSF51735 1 336 1.04E-93 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS25815 07f528df469bf2f87441cbfa623d13d4 438 SMART SM00245 181 373 2.8E-72 T 22-04-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 PP4_RS25815 07f528df469bf2f87441cbfa623d13d4 438 SUPERFAMILY SSF50156 99 182 3.68E-19 T 22-04-2016 IPR001478 PDZ domain GO:0005515 PP4_RS25815 07f528df469bf2f87441cbfa623d13d4 438 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 63 384 1.0E-104 T 22-04-2016 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 PP4_RS25815 07f528df469bf2f87441cbfa623d13d4 438 Pfam PF03572 Peptidase family S41 206 372 2.7E-57 T 22-04-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 PP4_RS25815 07f528df469bf2f87441cbfa623d13d4 438 SUPERFAMILY SSF52096 200 376 8.78E-84 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS25815 07f528df469bf2f87441cbfa623d13d4 438 SUPERFAMILY SSF52096 46 127 8.78E-84 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS25815 07f528df469bf2f87441cbfa623d13d4 438 PANTHER PTHR32060 62 375 5.5E-122 T 22-04-2016 PP4_RS25815 07f528df469bf2f87441cbfa623d13d4 438 Pfam PF13180 PDZ domain 109 181 3.1E-11 T 22-04-2016 IPR001478 PDZ domain GO:0005515 PP4_RS25815 07f528df469bf2f87441cbfa623d13d4 438 Gene3D G3DSA:2.30.42.10 115 190 3.6E-27 T 22-04-2016 IPR001478 PDZ domain GO:0005515 PP4_RS25815 07f528df469bf2f87441cbfa623d13d4 438 Gene3D G3DSA:3.90.226.10 411 432 1.2E-68 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS25815 07f528df469bf2f87441cbfa623d13d4 438 Gene3D G3DSA:3.90.226.10 191 375 1.2E-68 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS25815 07f528df469bf2f87441cbfa623d13d4 438 SMART SM00228 109 180 1.1E-16 T 22-04-2016 IPR001478 PDZ domain GO:0005515 PP4_RS25815 07f528df469bf2f87441cbfa623d13d4 438 Gene3D G3DSA:3.30.750.44 65 114 5.4E-11 T 22-04-2016 PP4_RS13205 fa56ba4e985f15ddc6121aba49d36451 334 PIRSF PIRSF020623 28 334 9.3E-122 T 22-04-2016 IPR011965 Phenylacetic acid degradation operon negative regulatory protein PaaX GO:0006351 UniPathway: UPA00930 PP4_RS13205 fa56ba4e985f15ddc6121aba49d36451 334 SUPERFAMILY SSF46785 80 159 3.94E-7 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS13205 fa56ba4e985f15ddc6121aba49d36451 334 Gene3D G3DSA:1.10.10.10 76 127 6.5E-5 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS13205 fa56ba4e985f15ddc6121aba49d36451 334 Pfam PF08223 PaaX-like protein C-terminal domain 134 301 1.6E-59 T 22-04-2016 IPR013225 PaaX-like, C-terminal UniPathway: UPA00930 PP4_RS13205 fa56ba4e985f15ddc6121aba49d36451 334 PANTHER PTHR30319 32 333 9.1E-68 T 22-04-2016 PP4_RS13205 fa56ba4e985f15ddc6121aba49d36451 334 Pfam PF07848 PaaX-like protein 48 116 1.7E-31 T 22-04-2016 IPR012906 PaaX-like, N-terminal UniPathway: UPA00930 PP4_RS13205 fa56ba4e985f15ddc6121aba49d36451 334 TIGRFAM TIGR02277 PaaX_trns_reg: phenylacetic acid degradation operon negative regulatory protein PaaX 51 331 3.4E-99 T 22-04-2016 IPR011965 Phenylacetic acid degradation operon negative regulatory protein PaaX GO:0006351 UniPathway: UPA00930 PP4_RS13205 fa56ba4e985f15ddc6121aba49d36451 334 PANTHER PTHR30319:SF1 32 333 9.1E-68 T 22-04-2016 PP4_RS10440 aec5ba350ac9f94fec0ac3de0dff1499 208 Pfam PF02798 Glutathione S-transferase, N-terminal domain 9 78 2.5E-9 T 22-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 PP4_RS10440 aec5ba350ac9f94fec0ac3de0dff1499 208 Pfam PF00043 Glutathione S-transferase, C-terminal domain 130 193 1.1E-7 T 22-04-2016 IPR004046 Glutathione S-transferase, C-terminal PP4_RS10440 aec5ba350ac9f94fec0ac3de0dff1499 208 Gene3D G3DSA:3.40.30.10 4 80 3.9E-17 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS10440 aec5ba350ac9f94fec0ac3de0dff1499 208 SUPERFAMILY SSF47616 75 204 5.99E-24 T 22-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like PP4_RS10440 aec5ba350ac9f94fec0ac3de0dff1499 208 SUPERFAMILY SSF52833 1 81 3.16E-16 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS10440 aec5ba350ac9f94fec0ac3de0dff1499 208 PANTHER PTHR11260 1 197 4.0E-24 T 22-04-2016 PP4_RS10440 aec5ba350ac9f94fec0ac3de0dff1499 208 Gene3D G3DSA:1.20.1050.10 81 202 3.4E-21 T 22-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like PP4_RS11680 7682a0552607f3ee6a64303723b95a1c 201 PANTHER PTHR19308 22 199 5.7E-61 T 22-04-2016 PP4_RS11680 7682a0552607f3ee6a64303723b95a1c 201 PIRSF PIRSF039033 1 201 1.1E-69 T 22-04-2016 IPR028347 START domain-containing protein PP4_RS11680 7682a0552607f3ee6a64303723b95a1c 201 Pfam PF01852 START domain 22 199 1.3E-12 T 22-04-2016 IPR002913 START domain GO:0008289 PP4_RS11680 7682a0552607f3ee6a64303723b95a1c 201 SUPERFAMILY SSF55961 21 198 8.36E-36 T 22-04-2016 PP4_RS11680 7682a0552607f3ee6a64303723b95a1c 201 Gene3D G3DSA:3.30.530.20 18 199 1.9E-36 T 22-04-2016 IPR023393 START-like domain PP4_RS11680 7682a0552607f3ee6a64303723b95a1c 201 PANTHER PTHR19308:SF1 22 199 5.7E-61 T 22-04-2016 PP4_RS10175 f6a050f0d4ef954df8838359fa5f058c 299 Pfam PF00950 ABC 3 transport family 25 285 1.4E-51 T 22-04-2016 IPR001626 ABC-3 GO:0005524|GO:0006810|GO:0016020|GO:0042626 PP4_RS10175 f6a050f0d4ef954df8838359fa5f058c 299 PANTHER PTHR30477 16 297 9.7E-85 T 22-04-2016 PP4_RS10175 f6a050f0d4ef954df8838359fa5f058c 299 SUPERFAMILY SSF81345 17 282 2.75E-33 T 22-04-2016 IPR029022 ABC transporter, BtuC-like PP4_RS10175 f6a050f0d4ef954df8838359fa5f058c 299 Gene3D G3DSA:1.10.3470.10 63 287 4.1E-13 T 22-04-2016 IPR029022 ABC transporter, BtuC-like PP4_RS10175 f6a050f0d4ef954df8838359fa5f058c 299 PANTHER PTHR30477:SF0 16 297 9.7E-85 T 22-04-2016 PP4_RS12210 c34b0237ff3120c4147a425b6091a095 143 Pfam PF05232 Chlorhexidine efflux transporter 71 133 1.1E-21 T 22-04-2016 IPR007896 Chlorhexidine efflux transporter PP4_RS12210 c34b0237ff3120c4147a425b6091a095 143 Pfam PF05232 Chlorhexidine efflux transporter 5 65 1.1E-19 T 22-04-2016 IPR007896 Chlorhexidine efflux transporter PP4_RS12210 c34b0237ff3120c4147a425b6091a095 143 PANTHER PTHR42641 1 142 4.7E-37 T 22-04-2016 PP4_RS10505 81cb06d10765fa4305f7f71d610ee396 482 Gene3D G3DSA:3.40.605.10 13 267 5.8E-99 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS10505 81cb06d10765fa4305f7f71d610ee396 482 Gene3D G3DSA:3.40.309.10 268 453 3.6E-69 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PP4_RS10505 81cb06d10765fa4305f7f71d610ee396 482 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 254 261 - T 22-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 PP4_RS10505 81cb06d10765fa4305f7f71d610ee396 482 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 282 293 - T 22-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 PP4_RS10505 81cb06d10765fa4305f7f71d610ee396 482 TIGRFAM TIGR01780 SSADH: succinate-semialdehyde dehydrogenase 30 476 3.5E-207 T 22-04-2016 IPR010102 Succinate semialdehyde dehydrogenase GO:0009013|GO:0009450|GO:0055114 UniPathway: UPA00733 PP4_RS10505 81cb06d10765fa4305f7f71d610ee396 482 SUPERFAMILY SSF53720 13 481 6.94E-170 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS10505 81cb06d10765fa4305f7f71d610ee396 482 PANTHER PTHR11699:SF49 1 480 1.9E-272 T 22-04-2016 PP4_RS10505 81cb06d10765fa4305f7f71d610ee396 482 Pfam PF00171 Aldehyde dehydrogenase family 19 478 3.2E-168 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PP4_RS10505 81cb06d10765fa4305f7f71d610ee396 482 PANTHER PTHR11699 1 480 1.9E-272 T 22-04-2016 PP4_RS06055 25b3be200338da775eaa9813c348aaf6 205 PIRSF PIRSF006324 1 205 1.8E-49 T 22-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PP4_RS06055 25b3be200338da775eaa9813c348aaf6 205 Pfam PF01810 LysE type translocator 15 204 8.5E-32 T 22-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PP4_RS06055 25b3be200338da775eaa9813c348aaf6 205 PANTHER PTHR30086 2 203 3.8E-39 T 22-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PP4_RS14365 3c1cdc14cbdf55af0a9754e1e275787b 528 SUPERFAMILY SSF141868 264 511 2.88E-74 T 22-04-2016 IPR001633 EAL domain PP4_RS14365 3c1cdc14cbdf55af0a9754e1e275787b 528 SMART SM00052 257 503 9.2E-89 T 22-04-2016 IPR001633 EAL domain PP4_RS14365 3c1cdc14cbdf55af0a9754e1e275787b 528 PANTHER PTHR33121 237 506 3.8E-96 T 22-04-2016 PP4_RS14365 3c1cdc14cbdf55af0a9754e1e275787b 528 Pfam PF12792 CSS motif domain associated with EAL 42 231 3.6E-43 T 22-04-2016 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain PP4_RS14365 3c1cdc14cbdf55af0a9754e1e275787b 528 PANTHER PTHR33121:SF1 237 506 3.8E-96 T 22-04-2016 PP4_RS14365 3c1cdc14cbdf55af0a9754e1e275787b 528 Gene3D G3DSA:3.20.20.450 263 510 1.9E-74 T 22-04-2016 IPR001633 EAL domain PP4_RS14365 3c1cdc14cbdf55af0a9754e1e275787b 528 Pfam PF00563 EAL domain 263 498 2.3E-59 T 22-04-2016 IPR001633 EAL domain PP4_RS20125 0b1dd18e53d39cb9ed067ac4ed215c9c 348 Gene3D G3DSA:3.30.1890.10 49 214 9.6E-11 T 22-04-2016 PP4_RS20125 0b1dd18e53d39cb9ed067ac4ed215c9c 348 SUPERFAMILY SSF160355 51 314 2.35E-41 T 22-04-2016 PP4_RS20125 0b1dd18e53d39cb9ed067ac4ed215c9c 348 Pfam PF02706 Chain length determinant protein 13 165 9.8E-16 T 22-04-2016 IPR003856 Lipopolysaccharide biosynthesis GO:0009103|GO:0016020 PP4_RS27220 4027e492b13974cd0baadcd81f43f415 209 PANTHER PTHR35802 2 209 1.7E-55 T 22-04-2016 PP4_RS27220 4027e492b13974cd0baadcd81f43f415 209 Pfam PF04299 Putative FMN-binding domain 1 168 1.3E-55 T 22-04-2016 IPR007396 Transcriptional regulator PAI 2-type PP4_RS27220 4027e492b13974cd0baadcd81f43f415 209 SUPERFAMILY SSF50475 8 193 1.57E-38 T 22-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 PP4_RS27220 4027e492b13974cd0baadcd81f43f415 209 Gene3D G3DSA:2.30.110.10 1 208 6.0E-70 T 22-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 PP4_RS27220 4027e492b13974cd0baadcd81f43f415 209 PIRSF PIRSF010372 1 209 6.0E-81 T 22-04-2016 IPR007396 Transcriptional regulator PAI 2-type PP4_RS27220 4027e492b13974cd0baadcd81f43f415 209 PANTHER PTHR35802:SF1 2 209 1.7E-55 T 22-04-2016 PP4_RS17765 0ceec812207b92dc2b2fbaecd0ad36b8 234 Pfam PF07729 FCD domain 92 215 3.8E-24 T 22-04-2016 IPR011711 GntR, C-terminal PP4_RS17765 0ceec812207b92dc2b2fbaecd0ad36b8 234 Gene3D G3DSA:1.20.120.530 88 220 7.2E-26 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PP4_RS17765 0ceec812207b92dc2b2fbaecd0ad36b8 234 SUPERFAMILY SSF46785 3 74 1.87E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS17765 0ceec812207b92dc2b2fbaecd0ad36b8 234 PANTHER PTHR11751 11 108 1.2E-22 T 22-04-2016 PP4_RS17765 0ceec812207b92dc2b2fbaecd0ad36b8 234 SMART SM00895 92 216 6.6E-19 T 22-04-2016 IPR011711 GntR, C-terminal PP4_RS17765 0ceec812207b92dc2b2fbaecd0ad36b8 234 SUPERFAMILY SSF48008 89 217 6.28E-23 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PP4_RS17765 0ceec812207b92dc2b2fbaecd0ad36b8 234 SMART SM00345 11 70 9.9E-18 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS17765 0ceec812207b92dc2b2fbaecd0ad36b8 234 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 70 9.9E-18 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS17765 0ceec812207b92dc2b2fbaecd0ad36b8 234 Gene3D G3DSA:1.10.10.10 6 72 2.2E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS17765 0ceec812207b92dc2b2fbaecd0ad36b8 234 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 30 44 1.6E-9 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS17765 0ceec812207b92dc2b2fbaecd0ad36b8 234 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 44 60 1.6E-9 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS17100 5d786cc26dea863b1af1d2d0f85919ff 1048 SUPERFAMILY SSF82693 155 191 2.09E-18 T 22-04-2016 PP4_RS17100 5d786cc26dea863b1af1d2d0f85919ff 1048 SUPERFAMILY SSF82693 277 333 2.09E-18 T 22-04-2016 PP4_RS17100 5d786cc26dea863b1af1d2d0f85919ff 1048 Gene3D G3DSA:3.30.70.1430 572 663 2.3E-4 T 22-04-2016 PP4_RS17100 5d786cc26dea863b1af1d2d0f85919ff 1048 SUPERFAMILY SSF82866 817 1043 7.19E-58 T 22-04-2016 PP4_RS17100 5d786cc26dea863b1af1d2d0f85919ff 1048 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 1 1046 0.0 T 22-04-2016 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 PP4_RS17100 5d786cc26dea863b1af1d2d0f85919ff 1048 Gene3D G3DSA:3.30.2090.10 726 818 9.1E-18 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS17100 5d786cc26dea863b1af1d2d0f85919ff 1048 Gene3D G3DSA:3.30.2090.10 192 275 4.8E-19 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS17100 5d786cc26dea863b1af1d2d0f85919ff 1048 Pfam PF00873 AcrB/AcrD/AcrF family 6 1037 0.0 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS17100 5d786cc26dea863b1af1d2d0f85919ff 1048 Gene3D G3DSA:3.30.70.1430 42 142 1.6E-27 T 22-04-2016 PP4_RS17100 5d786cc26dea863b1af1d2d0f85919ff 1048 SUPERFAMILY SSF82693 577 665 2.77E-6 T 22-04-2016 PP4_RS17100 5d786cc26dea863b1af1d2d0f85919ff 1048 PANTHER PTHR32063:SF24 2 1047 0.0 T 22-04-2016 PP4_RS17100 5d786cc26dea863b1af1d2d0f85919ff 1048 SUPERFAMILY SSF82714 192 274 2.49E-17 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS17100 5d786cc26dea863b1af1d2d0f85919ff 1048 PRINTS PR00702 Acriflavin resistance protein family signature 480 503 1.7E-23 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS17100 5d786cc26dea863b1af1d2d0f85919ff 1048 PRINTS PR00702 Acriflavin resistance protein family signature 12 36 1.7E-23 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS17100 5d786cc26dea863b1af1d2d0f85919ff 1048 PRINTS PR00702 Acriflavin resistance protein family signature 366 387 1.7E-23 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS17100 5d786cc26dea863b1af1d2d0f85919ff 1048 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 1.7E-23 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS17100 5d786cc26dea863b1af1d2d0f85919ff 1048 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 1.7E-23 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS17100 5d786cc26dea863b1af1d2d0f85919ff 1048 PRINTS PR00702 Acriflavin resistance protein family signature 339 362 1.7E-23 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS17100 5d786cc26dea863b1af1d2d0f85919ff 1048 Gene3D G3DSA:1.10.3850.10 283 508 4.6E-52 T 22-04-2016 PP4_RS17100 5d786cc26dea863b1af1d2d0f85919ff 1048 Gene3D G3DSA:1.10.3850.10 826 1042 4.5E-60 T 22-04-2016 PP4_RS17100 5d786cc26dea863b1af1d2d0f85919ff 1048 SUPERFAMILY SSF82866 299 506 4.45E-34 T 22-04-2016 PP4_RS17100 5d786cc26dea863b1af1d2d0f85919ff 1048 SUPERFAMILY SSF82714 726 818 4.45E-16 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS17100 5d786cc26dea863b1af1d2d0f85919ff 1048 PANTHER PTHR32063 2 1047 0.0 T 22-04-2016 PP4_RS17100 5d786cc26dea863b1af1d2d0f85919ff 1048 SUPERFAMILY SSF82693 42 126 1.23E-21 T 22-04-2016 PP4_RS23625 08e76cdaf5c23f2b5a8d8fdff539047e 137 Gene3D G3DSA:3.10.180.10 10 125 1.9E-25 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PP4_RS23625 08e76cdaf5c23f2b5a8d8fdff539047e 137 PANTHER PTHR21366:SF0 1 135 9.6E-21 T 22-04-2016 PP4_RS23625 08e76cdaf5c23f2b5a8d8fdff539047e 137 PANTHER PTHR21366 1 135 9.6E-21 T 22-04-2016 PP4_RS23625 08e76cdaf5c23f2b5a8d8fdff539047e 137 SUPERFAMILY SSF54593 12 130 5.1E-29 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PP4_RS23625 08e76cdaf5c23f2b5a8d8fdff539047e 137 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 13 124 7.2E-18 T 22-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain PP4_RS25740 7ea2e811aa3323f361aadded753d1202 336 Gene3D G3DSA:3.40.190.80 199 335 1.2E-55 T 22-04-2016 PP4_RS25740 7ea2e811aa3323f361aadded753d1202 336 Pfam PF00316 Fructose-1-6-bisphosphatase, N-terminal domain 5 197 6.7E-61 T 22-04-2016 IPR033391 Fructose-1-6-bisphosphatase class I, N-terminal KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 PP4_RS25740 7ea2e811aa3323f361aadded753d1202 336 Gene3D G3DSA:3.30.540.10 4 198 5.2E-76 T 22-04-2016 PP4_RS25740 7ea2e811aa3323f361aadded753d1202 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 310 335 1.7E-74 T 22-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 PP4_RS25740 7ea2e811aa3323f361aadded753d1202 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 65 91 1.7E-74 T 22-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 PP4_RS25740 7ea2e811aa3323f361aadded753d1202 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 28 55 1.7E-74 T 22-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 PP4_RS25740 7ea2e811aa3323f361aadded753d1202 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 182 205 1.7E-74 T 22-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 PP4_RS25740 7ea2e811aa3323f361aadded753d1202 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 151 174 1.7E-74 T 22-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 PP4_RS25740 7ea2e811aa3323f361aadded753d1202 336 PRINTS PR00115 Fructose-1,6-bisphosphatase signature 208 235 1.7E-74 T 22-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 PP4_RS25740 7ea2e811aa3323f361aadded753d1202 336 PANTHER PTHR11556 4 336 3.4E-151 T 22-04-2016 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0042132|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: REACT_474|UniPathway: UPA00138 PP4_RS25740 7ea2e811aa3323f361aadded753d1202 336 SUPERFAMILY SSF56655 2 334 1.34E-115 T 22-04-2016 PP4_RS25740 7ea2e811aa3323f361aadded753d1202 336 PIRSF PIRSF000904 1 336 4.1E-125 T 22-04-2016 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0042132|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: REACT_474|UniPathway: UPA00138 PP4_RS25740 7ea2e811aa3323f361aadded753d1202 336 Hamap MF_01855 Fructose-1,6-bisphosphatase class 1 [fbp]. 4 336 46.813 T 22-04-2016 IPR000146 Fructose-1,6-bisphosphatase class 1 GO:0005975|GO:0042132|GO:0042578 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|Reactome: REACT_474|UniPathway: UPA00138 PP4_RS25740 7ea2e811aa3323f361aadded753d1202 336 PIRSF PIRSF500210 1 336 1.9E-126 T 22-04-2016 IPR028343 Fructose-1,6-bisphosphatase KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484|UniPathway: UPA00138 PP4_RS13045 1d8b715d5d03f19705c058d48c4bd0dd 303 PANTHER PTHR11732 32 298 6.3E-37 T 22-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta PP4_RS13045 1d8b715d5d03f19705c058d48c4bd0dd 303 Pfam PF00248 Aldo/keto reductase family 47 294 2.3E-30 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain PP4_RS13045 1d8b715d5d03f19705c058d48c4bd0dd 303 Gene3D G3DSA:3.20.20.100 34 298 5.6E-41 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain PP4_RS13045 1d8b715d5d03f19705c058d48c4bd0dd 303 SUPERFAMILY SSF51430 34 298 1.83E-47 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain PP4_RS04330 9bebc6df258d17b6e04a3a2cbf668d39 318 Gene3D G3DSA:3.40.50.20 19 99 6.2E-30 T 22-04-2016 IPR016185 Pre-ATP-grasp domain PP4_RS04330 9bebc6df258d17b6e04a3a2cbf668d39 318 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 18 314 35.238 T 22-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PP4_RS04330 9bebc6df258d17b6e04a3a2cbf668d39 318 SUPERFAMILY SSF52440 19 111 8.54E-32 T 22-04-2016 IPR016185 Pre-ATP-grasp domain PP4_RS04330 9bebc6df258d17b6e04a3a2cbf668d39 318 Gene3D G3DSA:3.30.1490.20 122 188 1.1E-24 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 PP4_RS04330 9bebc6df258d17b6e04a3a2cbf668d39 318 PANTHER PTHR23132 19 314 9.3E-92 T 22-04-2016 PP4_RS04330 9bebc6df258d17b6e04a3a2cbf668d39 318 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 256 284 - T 22-04-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PP4_RS04330 9bebc6df258d17b6e04a3a2cbf668d39 318 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 19 312 1.7E-106 T 22-04-2016 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PP4_RS04330 9bebc6df258d17b6e04a3a2cbf668d39 318 SUPERFAMILY SSF56059 112 311 4.3E-58 T 22-04-2016 PP4_RS04330 9bebc6df258d17b6e04a3a2cbf668d39 318 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 78 89 - T 22-04-2016 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PP4_RS04330 9bebc6df258d17b6e04a3a2cbf668d39 318 Pfam PF01820 D-ala D-ala ligase N-terminus 19 101 7.8E-23 T 22-04-2016 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PP4_RS04330 9bebc6df258d17b6e04a3a2cbf668d39 318 Gene3D G3DSA:3.30.470.20 100 118 1.3E-46 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PP4_RS04330 9bebc6df258d17b6e04a3a2cbf668d39 318 Gene3D G3DSA:3.30.470.20 189 311 1.3E-46 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PP4_RS04330 9bebc6df258d17b6e04a3a2cbf668d39 318 Pfam PF07478 D-ala D-ala ligase C-terminus 118 310 2.0E-55 T 22-04-2016 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PP4_RS07930 60e1ec6854fc9eabf0eb3bfeb8b2e8f6 249 Pfam PF01012 Electron transfer flavoprotein domain 29 206 1.3E-46 T 22-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 PP4_RS07930 60e1ec6854fc9eabf0eb3bfeb8b2e8f6 249 PANTHER PTHR21294:SF8 1 249 6.4E-152 T 22-04-2016 PP4_RS07930 60e1ec6854fc9eabf0eb3bfeb8b2e8f6 249 SMART SM00893 23 211 2.0E-68 T 22-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 PP4_RS07930 60e1ec6854fc9eabf0eb3bfeb8b2e8f6 249 Gene3D G3DSA:3.40.50.620 1 247 4.4E-103 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS07930 60e1ec6854fc9eabf0eb3bfeb8b2e8f6 249 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 155 175 - T 22-04-2016 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 PP4_RS07930 60e1ec6854fc9eabf0eb3bfeb8b2e8f6 249 PIRSF PIRSF000090 1 249 6.3E-84 T 22-04-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 PP4_RS07930 60e1ec6854fc9eabf0eb3bfeb8b2e8f6 249 PANTHER PTHR21294 1 249 6.4E-152 T 22-04-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 PP4_RS07930 60e1ec6854fc9eabf0eb3bfeb8b2e8f6 249 SUPERFAMILY SSF52402 1 242 6.98E-86 T 22-04-2016 PP4_RS11115 41d9b68534f13b30fe47ab73f5cde43d 354 Gene3D G3DSA:1.20.140.10 205 258 5.7E-4 T 22-04-2016 PP4_RS11115 41d9b68534f13b30fe47ab73f5cde43d 354 Gene3D G3DSA:1.10.540.10 10 103 1.1E-10 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS11115 41d9b68534f13b30fe47ab73f5cde43d 354 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 14 103 7.7E-6 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS11115 41d9b68534f13b30fe47ab73f5cde43d 354 Gene3D G3DSA:2.40.110.10 120 204 5.5E-12 T 22-04-2016 PP4_RS11115 41d9b68534f13b30fe47ab73f5cde43d 354 PANTHER PTHR10909:SF305 24 253 5.2E-19 T 22-04-2016 PP4_RS11115 41d9b68534f13b30fe47ab73f5cde43d 354 SUPERFAMILY SSF47203 226 339 6.81E-7 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS11115 41d9b68534f13b30fe47ab73f5cde43d 354 PANTHER PTHR10909 24 253 5.2E-19 T 22-04-2016 PP4_RS11115 41d9b68534f13b30fe47ab73f5cde43d 354 SUPERFAMILY SSF56645 8 211 1.22E-33 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 PP4_RS03950 209208f47f73e2c47e3aeb6ec3c4781b 300 PANTHER PTHR32322:SF8 1 293 1.6E-92 T 22-04-2016 PP4_RS03950 209208f47f73e2c47e3aeb6ec3c4781b 300 Pfam PF00892 EamA-like transporter family 149 285 4.3E-13 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS03950 209208f47f73e2c47e3aeb6ec3c4781b 300 Pfam PF00892 EamA-like transporter family 5 134 5.1E-9 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS03950 209208f47f73e2c47e3aeb6ec3c4781b 300 PANTHER PTHR32322 1 293 1.6E-92 T 22-04-2016 PP4_RS03950 209208f47f73e2c47e3aeb6ec3c4781b 300 SUPERFAMILY SSF103481 194 289 7.59E-9 T 22-04-2016 PP4_RS03950 209208f47f73e2c47e3aeb6ec3c4781b 300 SUPERFAMILY SSF103481 35 138 4.32E-12 T 22-04-2016 PP4_RS13305 3fc36c53e5a5842723420502619526be 137 PANTHER PTHR32552:SF34 1 130 8.6E-32 T 22-04-2016 PP4_RS13305 3fc36c53e5a5842723420502619526be 137 PANTHER PTHR32552 1 130 8.6E-32 T 22-04-2016 PP4_RS13305 3fc36c53e5a5842723420502619526be 137 SUPERFAMILY SSF53098 1 128 1.64E-25 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PP4_RS13305 3fc36c53e5a5842723420502619526be 137 Pfam PF00665 Integrase core domain 1 84 1.3E-18 T 22-04-2016 IPR001584 Integrase, catalytic core GO:0015074 PP4_RS13305 3fc36c53e5a5842723420502619526be 137 Gene3D G3DSA:3.30.420.10 2 123 1.4E-21 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PP4_RS15065 38969901dbdfdf428d9438bfca3bde78 340 SUPERFAMILY SSF50129 3 155 4.11E-28 T 22-04-2016 IPR011032 GroES-like PP4_RS15065 38969901dbdfdf428d9438bfca3bde78 340 SMART SM00829 11 335 8.2E-13 T 22-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 PP4_RS15065 38969901dbdfdf428d9438bfca3bde78 340 Gene3D G3DSA:3.90.180.10 9 91 6.4E-17 T 22-04-2016 IPR011032 GroES-like PP4_RS15065 38969901dbdfdf428d9438bfca3bde78 340 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 93 5.1E-12 T 22-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 PP4_RS15065 38969901dbdfdf428d9438bfca3bde78 340 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 63 77 - T 22-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 PP4_RS15065 38969901dbdfdf428d9438bfca3bde78 340 PANTHER PTHR11695 16 339 9.5E-95 T 22-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PP4_RS15065 38969901dbdfdf428d9438bfca3bde78 340 Gene3D G3DSA:3.40.50.720 128 305 3.1E-35 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS15065 38969901dbdfdf428d9438bfca3bde78 340 PANTHER PTHR11695:SF605 16 339 9.5E-95 T 22-04-2016 PP4_RS15065 38969901dbdfdf428d9438bfca3bde78 340 Pfam PF00107 Zinc-binding dehydrogenase 161 272 1.2E-15 T 22-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 PP4_RS15065 38969901dbdfdf428d9438bfca3bde78 340 SUPERFAMILY SSF51735 119 274 1.4E-32 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS13200 2a9041c4e57c9493de4d80517e09c644 199 PANTHER PTHR13061 6 180 3.4E-54 T 22-04-2016 PP4_RS13200 2a9041c4e57c9493de4d80517e09c644 199 Gene3D G3DSA:2.160.10.10 3 167 8.2E-37 T 22-04-2016 PP4_RS13200 2a9041c4e57c9493de4d80517e09c644 199 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 11 41 3.1E-5 T 22-04-2016 IPR001451 Hexapeptide repeat PP4_RS13200 2a9041c4e57c9493de4d80517e09c644 199 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 88 122 1.4E-6 T 22-04-2016 IPR001451 Hexapeptide repeat PP4_RS13200 2a9041c4e57c9493de4d80517e09c644 199 SUPERFAMILY SSF51161 2 170 1.04E-41 T 22-04-2016 IPR011004 Trimeric LpxA-like PP4_RS13200 2a9041c4e57c9493de4d80517e09c644 199 TIGRFAM TIGR02287 PaaY: phenylacetic acid degradation protein PaaY 3 194 1.7E-114 T 22-04-2016 IPR011974 Phenylacetic acid degradation protein PaaY UniPathway: UPA00930 PP4_RS19230 04c5819e9a2297c5320e6eb770b4375a 678 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 9 334 1.4E-87 T 22-04-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 PP4_RS19230 04c5819e9a2297c5320e6eb770b4375a 678 Gene3D G3DSA:3.50.50.60 474 631 2.1E-50 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS19230 04c5819e9a2297c5320e6eb770b4375a 678 Gene3D G3DSA:3.50.50.60 364 469 9.4E-26 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS19230 04c5819e9a2297c5320e6eb770b4375a 678 PANTHER PTHR22893:SF25 1 420 5.0E-250 T 22-04-2016 PP4_RS19230 04c5819e9a2297c5320e6eb770b4375a 678 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 378 641 4.3E-23 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS19230 04c5819e9a2297c5320e6eb770b4375a 678 SUPERFAMILY SSF51395 5 365 5.64E-113 T 22-04-2016 PP4_RS19230 04c5819e9a2297c5320e6eb770b4375a 678 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 462 480 2.29E-15 T 22-04-2016 PP4_RS19230 04c5819e9a2297c5320e6eb770b4375a 678 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 624 640 2.29E-15 T 22-04-2016 PP4_RS19230 04c5819e9a2297c5320e6eb770b4375a 678 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 502 520 2.29E-15 T 22-04-2016 PP4_RS19230 04c5819e9a2297c5320e6eb770b4375a 678 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 380 399 2.29E-15 T 22-04-2016 PP4_RS19230 04c5819e9a2297c5320e6eb770b4375a 678 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 379 401 1.45E-5 T 22-04-2016 PP4_RS19230 04c5819e9a2297c5320e6eb770b4375a 678 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 625 639 1.45E-5 T 22-04-2016 PP4_RS19230 04c5819e9a2297c5320e6eb770b4375a 678 SUPERFAMILY SSF51971 336 524 1.12E-41 T 22-04-2016 PP4_RS19230 04c5819e9a2297c5320e6eb770b4375a 678 SUPERFAMILY SSF51905 465 523 3.34E-20 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS19230 04c5819e9a2297c5320e6eb770b4375a 678 SUPERFAMILY SSF51905 561 656 3.34E-20 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS19230 04c5819e9a2297c5320e6eb770b4375a 678 PANTHER PTHR22893 1 420 5.0E-250 T 22-04-2016 PP4_RS19230 04c5819e9a2297c5320e6eb770b4375a 678 Gene3D G3DSA:3.20.20.70 6 363 3.2E-123 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS04675 59f791de03f0f4b2a981de0289da90d6 624 SMART SM00283 362 623 3.3E-83 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS04675 59f791de03f0f4b2a981de0289da90d6 624 Pfam PF02743 Cache domain 36 254 7.8E-28 T 22-04-2016 IPR033479 Double Cache domain 1 PP4_RS04675 59f791de03f0f4b2a981de0289da90d6 624 PANTHER PTHR32089:SF39 11 624 1.0E-271 T 22-04-2016 PP4_RS04675 59f791de03f0f4b2a981de0289da90d6 624 Gene3D G3DSA:1.10.287.950 376 592 6.5E-54 T 22-04-2016 PP4_RS04675 59f791de03f0f4b2a981de0289da90d6 624 SMART SM00304 293 347 1.9E-12 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS04675 59f791de03f0f4b2a981de0289da90d6 624 Pfam PF00672 HAMP domain 274 343 7.5E-14 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS04675 59f791de03f0f4b2a981de0289da90d6 624 SUPERFAMILY SSF58104 315 624 7.98E-74 T 22-04-2016 PP4_RS04675 59f791de03f0f4b2a981de0289da90d6 624 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 423 622 1.3E-46 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS04675 59f791de03f0f4b2a981de0289da90d6 624 SUPERFAMILY SSF103190 82 179 5.73E-11 T 22-04-2016 IPR029151 Periplasmic sensor domain-like PP4_RS04675 59f791de03f0f4b2a981de0289da90d6 624 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 460 487 2.7E-22 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS04675 59f791de03f0f4b2a981de0289da90d6 624 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 489 518 2.7E-22 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS04675 59f791de03f0f4b2a981de0289da90d6 624 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 174 189 2.7E-22 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS04675 59f791de03f0f4b2a981de0289da90d6 624 PANTHER PTHR32089 11 624 1.0E-271 T 22-04-2016 PP4_RS04675 59f791de03f0f4b2a981de0289da90d6 624 Gene3D G3DSA:3.30.450.20 139 270 4.8E-27 T 22-04-2016 PP4_RS08050 49942f5cfb8983eaa64a47e301b63eac 634 Hamap MF_00505 Chaperone protein HtpG [htpG]. 5 630 32.634 T 22-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 PP4_RS08050 49942f5cfb8983eaa64a47e301b63eac 634 Gene3D G3DSA:3.30.565.10 8 243 1.5E-84 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS08050 49942f5cfb8983eaa64a47e301b63eac 634 SUPERFAMILY SSF110942 518 630 1.96E-34 T 22-04-2016 PP4_RS08050 49942f5cfb8983eaa64a47e301b63eac 634 Pfam PF00183 Hsp90 protein 223 629 1.2E-130 T 22-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 PP4_RS08050 49942f5cfb8983eaa64a47e301b63eac 634 PANTHER PTHR11528 2 631 0.0 T 22-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 PP4_RS08050 49942f5cfb8983eaa64a47e301b63eac 634 PIRSF PIRSF002583 2 633 1.4E-218 T 22-04-2016 IPR001404 Heat shock protein Hsp90 family GO:0005524|GO:0006457|GO:0006950|GO:0051082 PP4_RS08050 49942f5cfb8983eaa64a47e301b63eac 634 SMART SM00387 30 187 2.4E-11 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS08050 49942f5cfb8983eaa64a47e301b63eac 634 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 30 186 1.2E-14 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS08050 49942f5cfb8983eaa64a47e301b63eac 634 SUPERFAMILY SSF55874 8 216 1.96E-66 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS08050 49942f5cfb8983eaa64a47e301b63eac 634 ProSitePatterns PS00298 Heat shock hsp90 proteins family signature. 28 37 - T 22-04-2016 IPR019805 Heat shock protein Hsp90, conserved site GO:0005524|GO:0006457|GO:0006950|GO:0051082 PP4_RS08050 49942f5cfb8983eaa64a47e301b63eac 634 SUPERFAMILY SSF54211 236 491 2.65E-96 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PP4_RS08050 49942f5cfb8983eaa64a47e301b63eac 634 PRINTS PR00775 90kDa heat shock protein signature 193 211 1.6E-62 T 22-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal PP4_RS08050 49942f5cfb8983eaa64a47e301b63eac 634 PRINTS PR00775 90kDa heat shock protein signature 123 145 1.6E-62 T 22-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal PP4_RS08050 49942f5cfb8983eaa64a47e301b63eac 634 PRINTS PR00775 90kDa heat shock protein signature 29 51 1.6E-62 T 22-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal PP4_RS08050 49942f5cfb8983eaa64a47e301b63eac 634 PRINTS PR00775 90kDa heat shock protein signature 8 28 1.6E-62 T 22-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal PP4_RS08050 49942f5cfb8983eaa64a47e301b63eac 634 PRINTS PR00775 90kDa heat shock protein signature 175 192 1.6E-62 T 22-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal PP4_RS08050 49942f5cfb8983eaa64a47e301b63eac 634 PRINTS PR00775 90kDa heat shock protein signature 78 95 1.6E-62 T 22-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal PP4_RS08050 49942f5cfb8983eaa64a47e301b63eac 634 PRINTS PR00775 90kDa heat shock protein signature 96 113 1.6E-62 T 22-04-2016 IPR020575 Heat shock protein Hsp90, N-terminal PP4_RS08050 49942f5cfb8983eaa64a47e301b63eac 634 PANTHER PTHR11528:SF44 2 631 0.0 T 22-04-2016 PP4_RS08265 752e85f851ff780f90aa5cb359fe4584 82 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 19 33 4.7E-10 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS08265 752e85f851ff780f90aa5cb359fe4584 82 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 49 61 4.7E-10 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS08265 752e85f851ff780f90aa5cb359fe4584 82 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 33 49 4.7E-10 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS08265 752e85f851ff780f90aa5cb359fe4584 82 Pfam PF00196 Bacterial regulatory proteins, luxR family 18 73 2.6E-21 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS08265 752e85f851ff780f90aa5cb359fe4584 82 ProSitePatterns PS00622 LuxR-type HTH domain signature. 33 60 - T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS08265 752e85f851ff780f90aa5cb359fe4584 82 PANTHER PTHR26402 13 81 3.1E-16 T 22-04-2016 PP4_RS08265 752e85f851ff780f90aa5cb359fe4584 82 SMART SM00421 16 73 5.2E-21 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS08265 752e85f851ff780f90aa5cb359fe4584 82 Gene3D G3DSA:1.10.10.10 18 78 1.5E-26 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS08265 752e85f851ff780f90aa5cb359fe4584 82 PANTHER PTHR26402:SF102 13 81 3.1E-16 T 22-04-2016 PP4_RS08265 752e85f851ff780f90aa5cb359fe4584 82 SUPERFAMILY SSF46894 8 79 4.08E-21 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS23405 373f88c47ad2c73ff5c9c0f42fb0daa1 171 Pfam PF01252 Signal peptidase (SPase) II 18 160 1.7E-38 T 22-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 PP4_RS23405 373f88c47ad2c73ff5c9c0f42fb0daa1 171 Hamap MF_00161 Lipoprotein signal peptidase [lspA]. 9 166 17.513 T 22-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 PP4_RS23405 373f88c47ad2c73ff5c9c0f42fb0daa1 171 PANTHER PTHR33695 3 167 5.6E-62 T 22-04-2016 PP4_RS23405 373f88c47ad2c73ff5c9c0f42fb0daa1 171 PANTHER PTHR33695:SF1 3 167 5.6E-62 T 22-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 PP4_RS23405 373f88c47ad2c73ff5c9c0f42fb0daa1 171 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 56 64 1.6E-18 T 22-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 PP4_RS23405 373f88c47ad2c73ff5c9c0f42fb0daa1 171 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 104 119 1.6E-18 T 22-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 PP4_RS23405 373f88c47ad2c73ff5c9c0f42fb0daa1 171 PRINTS PR00781 Lipoprotein signal peptidase family (A8) signature 141 157 1.6E-18 T 22-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 PP4_RS23405 373f88c47ad2c73ff5c9c0f42fb0daa1 171 ProSitePatterns PS00855 Signal peptidases II signature. 107 119 - T 22-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 PP4_RS23405 373f88c47ad2c73ff5c9c0f42fb0daa1 171 TIGRFAM TIGR00077 lspA: signal peptidase II 12 166 1.1E-39 T 22-04-2016 IPR001872 Peptidase A8, signal peptidase II GO:0004190|GO:0006508|GO:0016020 UniPathway: UPA00665 PP4_RS03795 4168f34d84a76dd002616ec3883952d9 210 Gene3D G3DSA:1.20.1050.10 90 207 3.6E-44 T 22-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like PP4_RS03795 4168f34d84a76dd002616ec3883952d9 210 SUPERFAMILY SSF52833 1 85 8.53E-25 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS03795 4168f34d84a76dd002616ec3883952d9 210 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 80 1.2E-15 T 22-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 PP4_RS03795 4168f34d84a76dd002616ec3883952d9 210 TIGRFAM TIGR01262 maiA: maleylacetoacetate isomerase 3 207 4.7E-85 T 22-04-2016 IPR005955 Maleylacetoacetate isomerase GO:0003824|GO:0005737|GO:0009072 PP4_RS03795 4168f34d84a76dd002616ec3883952d9 210 PANTHER PTHR11260 1 207 5.6E-83 T 22-04-2016 PP4_RS03795 4168f34d84a76dd002616ec3883952d9 210 SUPERFAMILY SSF47616 82 207 2.56E-29 T 22-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like PP4_RS03795 4168f34d84a76dd002616ec3883952d9 210 PANTHER PTHR11260:SF289 1 207 5.6E-83 T 22-04-2016 PP4_RS03795 4168f34d84a76dd002616ec3883952d9 210 Gene3D G3DSA:3.40.30.10 1 89 6.0E-31 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS03795 4168f34d84a76dd002616ec3883952d9 210 Pfam PF13410 Glutathione S-transferase, C-terminal domain 136 171 3.0E-6 T 22-04-2016 PP4_RS11035 ca7e904dee65cd4c810a00aa3a1a0824 250 Pfam PF00392 Bacterial regulatory proteins, gntR family 21 81 5.3E-17 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS11035 ca7e904dee65cd4c810a00aa3a1a0824 250 Gene3D G3DSA:1.10.10.10 14 82 1.3E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS11035 ca7e904dee65cd4c810a00aa3a1a0824 250 SMART SM00895 91 215 1.0E-17 T 22-04-2016 IPR011711 GntR, C-terminal PP4_RS11035 ca7e904dee65cd4c810a00aa3a1a0824 250 SUPERFAMILY SSF48008 87 223 1.7E-23 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PP4_RS11035 ca7e904dee65cd4c810a00aa3a1a0824 250 Gene3D G3DSA:1.20.120.530 84 228 1.5E-25 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PP4_RS11035 ca7e904dee65cd4c810a00aa3a1a0824 250 Pfam PF07729 FCD domain 91 214 1.0E-21 T 22-04-2016 IPR011711 GntR, C-terminal PP4_RS11035 ca7e904dee65cd4c810a00aa3a1a0824 250 SUPERFAMILY SSF46785 15 85 1.31E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS11035 ca7e904dee65cd4c810a00aa3a1a0824 250 SMART SM00345 23 81 2.8E-15 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS11035 ca7e904dee65cd4c810a00aa3a1a0824 250 PANTHER PTHR11751 17 107 3.0E-25 T 22-04-2016 PP4_RS11035 ca7e904dee65cd4c810a00aa3a1a0824 250 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 55 71 9.9E-8 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS11035 ca7e904dee65cd4c810a00aa3a1a0824 250 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 41 55 9.9E-8 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS02690 2bc1fedfbed95f5af3c1994ce5969029 809 SUPERFAMILY SSF50692 620 651 8.59E-41 T 22-04-2016 IPR009010 Aspartate decarboxylase-like domain PP4_RS02690 2bc1fedfbed95f5af3c1994ce5969029 809 SUPERFAMILY SSF50692 680 808 8.59E-41 T 22-04-2016 IPR009010 Aspartate decarboxylase-like domain PP4_RS02690 2bc1fedfbed95f5af3c1994ce5969029 809 PANTHER PTHR11615 287 382 1.3E-259 T 22-04-2016 PP4_RS02690 2bc1fedfbed95f5af3c1994ce5969029 809 PANTHER PTHR11615 574 649 1.3E-259 T 22-04-2016 PP4_RS02690 2bc1fedfbed95f5af3c1994ce5969029 809 PANTHER PTHR11615 211 248 1.3E-259 T 22-04-2016 PP4_RS02690 2bc1fedfbed95f5af3c1994ce5969029 809 PANTHER PTHR11615 399 483 1.3E-259 T 22-04-2016 PP4_RS02690 2bc1fedfbed95f5af3c1994ce5969029 809 PANTHER PTHR11615 1 183 1.3E-259 T 22-04-2016 PP4_RS02690 2bc1fedfbed95f5af3c1994ce5969029 809 PANTHER PTHR11615 673 809 1.3E-259 T 22-04-2016 PP4_RS02690 2bc1fedfbed95f5af3c1994ce5969029 809 Gene3D G3DSA:3.40.50.740 322 471 1.4E-56 T 22-04-2016 PP4_RS02690 2bc1fedfbed95f5af3c1994ce5969029 809 Pfam PF01568 Molydopterin dinucleotide binding domain 686 802 8.8E-13 T 22-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 PP4_RS02690 2bc1fedfbed95f5af3c1994ce5969029 809 Gene3D G3DSA:3.40.228.10 153 258 1.9E-72 T 22-04-2016 PP4_RS02690 2bc1fedfbed95f5af3c1994ce5969029 809 Gene3D G3DSA:3.40.228.10 1 108 1.9E-72 T 22-04-2016 PP4_RS02690 2bc1fedfbed95f5af3c1994ce5969029 809 TIGRFAM TIGR01553 formate-DH-alph: formate dehydrogenase-N alpha subunit 1 808 0.0 T 22-04-2016 IPR006443 Formate dehydrogenase-N, alpha subunit GO:0008863|GO:0009055|GO:0043546|GO:0045333|GO:0047111 PP4_RS02690 2bc1fedfbed95f5af3c1994ce5969029 809 PANTHER PTHR11615:SF149 287 382 1.3E-259 T 22-04-2016 PP4_RS02690 2bc1fedfbed95f5af3c1994ce5969029 809 PANTHER PTHR11615:SF149 574 649 1.3E-259 T 22-04-2016 PP4_RS02690 2bc1fedfbed95f5af3c1994ce5969029 809 PANTHER PTHR11615:SF149 211 248 1.3E-259 T 22-04-2016 PP4_RS02690 2bc1fedfbed95f5af3c1994ce5969029 809 PANTHER PTHR11615:SF149 399 483 1.3E-259 T 22-04-2016 PP4_RS02690 2bc1fedfbed95f5af3c1994ce5969029 809 PANTHER PTHR11615:SF149 1 183 1.3E-259 T 22-04-2016 PP4_RS02690 2bc1fedfbed95f5af3c1994ce5969029 809 PANTHER PTHR11615:SF149 673 809 1.3E-259 T 22-04-2016 PP4_RS02690 2bc1fedfbed95f5af3c1994ce5969029 809 Pfam PF00384 Molybdopterin oxidoreductase 2 380 4.3E-24 T 22-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 PP4_RS02690 2bc1fedfbed95f5af3c1994ce5969029 809 SUPERFAMILY SSF53706 1 641 2.66E-226 T 22-04-2016 PP4_RS02690 2bc1fedfbed95f5af3c1994ce5969029 809 Gene3D G3DSA:2.40.40.20 679 808 2.2E-45 T 22-04-2016 PP4_RS02690 2bc1fedfbed95f5af3c1994ce5969029 809 Gene3D G3DSA:2.40.40.20 608 647 2.2E-45 T 22-04-2016 PP4_RS03585 13c7412412ac167aa55834885ba08c53 201 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 52 80 - T 22-04-2016 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 PP4_RS03585 13c7412412ac167aa55834885ba08c53 201 SUPERFAMILY SSF49482 4 201 3.79E-60 T 22-04-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 PP4_RS03585 13c7412412ac167aa55834885ba08c53 201 TIGRFAM TIGR02423 protocat_alph: protocatechuate 3,4-dioxygenase, alpha subunit 9 201 2.7E-80 T 22-04-2016 IPR012786 Protocatechuate 3,4-dioxygenase, alpha subunit GO:0005506|GO:0018578|GO:0019439|GO:0055114 KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3|UniPathway: UPA00157 PP4_RS03585 13c7412412ac167aa55834885ba08c53 201 PANTHER PTHR33711:SF2 1 201 2.0E-81 T 22-04-2016 PP4_RS03585 13c7412412ac167aa55834885ba08c53 201 Pfam PF00775 Dioxygenase 34 191 1.7E-13 T 22-04-2016 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 PP4_RS03585 13c7412412ac167aa55834885ba08c53 201 Gene3D G3DSA:2.60.130.10 4 201 7.0E-68 T 22-04-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 PP4_RS03585 13c7412412ac167aa55834885ba08c53 201 PANTHER PTHR33711 1 201 2.0E-81 T 22-04-2016 PP4_RS11785 bd9366c1fcab463a65c399700a3ba19c 694 Pfam PF01968 Hydantoinase/oxoprolinase 210 497 1.7E-85 T 22-04-2016 IPR002821 Hydantoinase/oxoprolinase GO:0016787 PP4_RS11785 bd9366c1fcab463a65c399700a3ba19c 694 Pfam PF05378 Hydantoinase/oxoprolinase N-terminal region 6 188 8.5E-41 T 22-04-2016 IPR008040 Hydantoinaseoxoprolinase, N-terminal PP4_RS11785 bd9366c1fcab463a65c399700a3ba19c 694 PANTHER PTHR11365 1 682 4.3E-170 T 22-04-2016 PP4_RS11785 bd9366c1fcab463a65c399700a3ba19c 694 SUPERFAMILY SSF53067 1 61 1.15E-5 T 22-04-2016 PP4_RS25570 b1fe4b0a950f9882d63a1940b25034ad 204 SUPERFAMILY SSF46689 2 71 2.59E-16 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS25570 b1fe4b0a950f9882d63a1940b25034ad 204 PANTHER PTHR30055:SF30 1 189 4.3E-47 T 22-04-2016 PP4_RS25570 b1fe4b0a950f9882d63a1940b25034ad 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 28 51 4.8E-9 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS25570 b1fe4b0a950f9882d63a1940b25034ad 204 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 7 20 4.8E-9 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS25570 b1fe4b0a950f9882d63a1940b25034ad 204 PANTHER PTHR30055 1 189 4.3E-47 T 22-04-2016 PP4_RS25570 b1fe4b0a950f9882d63a1940b25034ad 204 Pfam PF13972 Bacterial transcriptional repressor 56 193 8.6E-36 T 22-04-2016 IPR025722 Bacterial transcriptional repressor TetR PP4_RS25570 b1fe4b0a950f9882d63a1940b25034ad 204 Gene3D G3DSA:1.10.357.10 2 159 3.4E-26 T 22-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PP4_RS25570 b1fe4b0a950f9882d63a1940b25034ad 204 Pfam PF00440 Bacterial regulatory proteins, tetR family 7 51 1.6E-11 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS23750 8e0c984b82639be76adc42ee9de2494f 374 PANTHER PTHR24078 1 369 9.2E-169 T 22-04-2016 PP4_RS23750 8e0c984b82639be76adc42ee9de2494f 374 PRINTS PR00625 DnaJ domain signature 7 25 3.4E-31 T 22-04-2016 IPR001623 DnaJ domain PP4_RS23750 8e0c984b82639be76adc42ee9de2494f 374 PRINTS PR00625 DnaJ domain signature 62 81 3.4E-31 T 22-04-2016 IPR001623 DnaJ domain PP4_RS23750 8e0c984b82639be76adc42ee9de2494f 374 PRINTS PR00625 DnaJ domain signature 25 40 3.4E-31 T 22-04-2016 IPR001623 DnaJ domain PP4_RS23750 8e0c984b82639be76adc42ee9de2494f 374 PRINTS PR00625 DnaJ domain signature 42 62 3.4E-31 T 22-04-2016 IPR001623 DnaJ domain PP4_RS23750 8e0c984b82639be76adc42ee9de2494f 374 SUPERFAMILY SSF57938 133 210 2.35E-22 T 22-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 PP4_RS23750 8e0c984b82639be76adc42ee9de2494f 374 Gene3D G3DSA:2.60.260.20 107 140 3.4E-22 T 22-04-2016 PP4_RS23750 8e0c984b82639be76adc42ee9de2494f 374 Gene3D G3DSA:2.60.260.20 210 253 3.4E-22 T 22-04-2016 PP4_RS23750 8e0c984b82639be76adc42ee9de2494f 374 Gene3D G3DSA:1.10.287.110 1 102 1.2E-35 T 22-04-2016 IPR001623 DnaJ domain PP4_RS23750 8e0c984b82639be76adc42ee9de2494f 374 Gene3D G3DSA:2.10.230.10 141 209 1.4E-24 T 22-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 PP4_RS23750 8e0c984b82639be76adc42ee9de2494f 374 ProSitePatterns PS00636 Nt-dnaJ domain signature. 47 66 - T 22-04-2016 IPR018253 DnaJ domain, conserved site PP4_RS23750 8e0c984b82639be76adc42ee9de2494f 374 Pfam PF00684 DnaJ central domain 146 206 9.2E-15 T 22-04-2016 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 PP4_RS23750 8e0c984b82639be76adc42ee9de2494f 374 SMART SM00271 4 62 1.6E-32 T 22-04-2016 IPR001623 DnaJ domain PP4_RS23750 8e0c984b82639be76adc42ee9de2494f 374 Pfam PF01556 DnaJ C terminal domain 120 332 4.1E-43 T 22-04-2016 IPR002939 Chaperone DnaJ, C-terminal PP4_RS23750 8e0c984b82639be76adc42ee9de2494f 374 PANTHER PTHR24078:SF231 1 369 9.2E-169 T 22-04-2016 PP4_RS23750 8e0c984b82639be76adc42ee9de2494f 374 Pfam PF00226 DnaJ domain 5 67 7.7E-27 T 22-04-2016 IPR001623 DnaJ domain PP4_RS23750 8e0c984b82639be76adc42ee9de2494f 374 Gene3D G3DSA:2.60.260.20 255 332 6.5E-24 T 22-04-2016 PP4_RS23750 8e0c984b82639be76adc42ee9de2494f 374 SUPERFAMILY SSF49493 258 343 2.22E-23 T 22-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 PP4_RS23750 8e0c984b82639be76adc42ee9de2494f 374 SUPERFAMILY SSF46565 1 110 3.27E-36 T 22-04-2016 IPR001623 DnaJ domain PP4_RS23750 8e0c984b82639be76adc42ee9de2494f 374 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 2 370 42.713 T 22-04-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 PP4_RS23750 8e0c984b82639be76adc42ee9de2494f 374 SUPERFAMILY SSF49493 113 168 9.94E-22 T 22-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 PP4_RS23750 8e0c984b82639be76adc42ee9de2494f 374 SUPERFAMILY SSF49493 212 266 9.94E-22 T 22-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 PP4_RS23750 8e0c984b82639be76adc42ee9de2494f 374 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 5 348 2.1E-139 T 22-04-2016 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 PP4_RS24490 fff2c5270524f7b27b6160648b1220c7 505 Hamap MF_01148 Apolipoprotein N-acyltransferase [lnt]. 8 488 23.339 T 22-04-2016 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 UniPathway: UPA00666 PP4_RS24490 fff2c5270524f7b27b6160648b1220c7 505 SUPERFAMILY SSF56317 220 483 3.92E-46 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PP4_RS24490 fff2c5270524f7b27b6160648b1220c7 505 Gene3D G3DSA:3.60.110.10 218 471 2.6E-28 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PP4_RS24490 fff2c5270524f7b27b6160648b1220c7 505 TIGRFAM TIGR00546 lnt: apolipoprotein N-acyltransferase 61 451 1.9E-97 T 22-04-2016 IPR004563 Apolipoprotein N-acyltransferase GO:0016021|GO:0016410|GO:0042158 UniPathway: UPA00666 PP4_RS24490 fff2c5270524f7b27b6160648b1220c7 505 PANTHER PTHR38686 1 504 1.2E-104 T 22-04-2016 PP4_RS24490 fff2c5270524f7b27b6160648b1220c7 505 Pfam PF00795 Carbon-nitrogen hydrolase 226 468 1.1E-28 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PP4_RS03075 5bfb1de73e939f48b229c77c0d95be47 3513 Pfam PF14252 Domain of unknown function (DUF4347) 74 237 1.6E-47 T 22-04-2016 IPR025592 Domain of unknown function DUF4347 PP4_RS03075 5bfb1de73e939f48b229c77c0d95be47 3513 Gene3D G3DSA:2.60.40.10 1888 1959 1.1E-5 T 22-04-2016 IPR013783 Immunoglobulin-like fold PP4_RS03075 5bfb1de73e939f48b229c77c0d95be47 3513 SUPERFAMILY SSF49478 1883 1973 8.63E-5 T 22-04-2016 PP4_RS03075 5bfb1de73e939f48b229c77c0d95be47 3513 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 1354 1393 2.0E-6 T 22-04-2016 IPR001434 Domain of unknown function DUF11 PP4_RS03075 5bfb1de73e939f48b229c77c0d95be47 3513 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 3037 3117 5.7E-15 T 22-04-2016 IPR010221 VCBS repeat PP4_RS03075 5bfb1de73e939f48b229c77c0d95be47 3513 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 2512 2588 3.2E-12 T 22-04-2016 IPR010221 VCBS repeat PP4_RS03075 5bfb1de73e939f48b229c77c0d95be47 3513 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 2903 2981 5.4E-6 T 22-04-2016 IPR010221 VCBS repeat PP4_RS03075 5bfb1de73e939f48b229c77c0d95be47 3513 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 3162 3243 3.2E-14 T 22-04-2016 IPR010221 VCBS repeat PP4_RS03075 5bfb1de73e939f48b229c77c0d95be47 3513 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 2218 2298 9.3E-11 T 22-04-2016 IPR010221 VCBS repeat PP4_RS03075 5bfb1de73e939f48b229c77c0d95be47 3513 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 3284 3348 3.6E-6 T 22-04-2016 IPR010221 VCBS repeat PP4_RS03075 5bfb1de73e939f48b229c77c0d95be47 3513 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 2356 2430 2.8E-17 T 22-04-2016 IPR010221 VCBS repeat PP4_RS03075 5bfb1de73e939f48b229c77c0d95be47 3513 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 2638 2710 7.5E-13 T 22-04-2016 IPR010221 VCBS repeat PP4_RS03075 5bfb1de73e939f48b229c77c0d95be47 3513 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 2772 2843 5.2E-17 T 22-04-2016 IPR010221 VCBS repeat PP4_RS03980 936b19a2408495f77cfd887981bf3641 286 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 43 226 1.6E-36 T 22-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 PP4_RS03980 936b19a2408495f77cfd887981bf3641 286 PANTHER PTHR30367:SF5 7 285 2.4E-131 T 22-04-2016 PP4_RS03980 936b19a2408495f77cfd887981bf3641 286 SUPERFAMILY SSF111369 38 198 1.12E-21 T 22-04-2016 PP4_RS03980 936b19a2408495f77cfd887981bf3641 286 Pfam PF13533 Biotin-lipoyl like 44 89 3.4E-18 T 22-04-2016 PP4_RS03980 936b19a2408495f77cfd887981bf3641 286 PANTHER PTHR30367 7 285 2.4E-131 T 22-04-2016 PP4_RS03980 936b19a2408495f77cfd887981bf3641 286 Gene3D G3DSA:2.40.50.100 44 76 2.0E-18 T 22-04-2016 PP4_RS03980 936b19a2408495f77cfd887981bf3641 286 Gene3D G3DSA:2.40.50.100 150 184 2.0E-18 T 22-04-2016 PP4_RS03980 936b19a2408495f77cfd887981bf3641 286 Pfam PF13437 HlyD family secretion protein 153 233 6.8E-11 T 22-04-2016 PP4_RS23140 c4fc919c0fb4eaa4f5d56a3d1d047543 812 Pfam PF13654 AAA domain 30 540 3.7E-174 T 22-04-2016 PP4_RS23140 c4fc919c0fb4eaa4f5d56a3d1d047543 812 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 566 582 7.9E-13 T 22-04-2016 PP4_RS23140 c4fc919c0fb4eaa4f5d56a3d1d047543 812 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 66 85 7.9E-13 T 22-04-2016 PP4_RS23140 c4fc919c0fb4eaa4f5d56a3d1d047543 812 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 677 696 7.9E-13 T 22-04-2016 PP4_RS23140 c4fc919c0fb4eaa4f5d56a3d1d047543 812 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 707 725 7.9E-13 T 22-04-2016 PP4_RS23140 c4fc919c0fb4eaa4f5d56a3d1d047543 812 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 647 666 7.9E-13 T 22-04-2016 PP4_RS23140 c4fc919c0fb4eaa4f5d56a3d1d047543 812 Gene3D G3DSA:3.40.50.300 298 393 7.2E-11 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23140 c4fc919c0fb4eaa4f5d56a3d1d047543 812 Gene3D G3DSA:3.40.50.300 35 97 7.2E-11 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23140 c4fc919c0fb4eaa4f5d56a3d1d047543 812 PANTHER PTHR10046 149 761 3.1E-143 T 22-04-2016 IPR027065 Lon protease GO:0004176|GO:0004252|GO:0005524|GO:0030163 PP4_RS23140 c4fc919c0fb4eaa4f5d56a3d1d047543 812 PANTHER PTHR10046:SF46 149 761 3.1E-143 T 22-04-2016 PP4_RS23140 c4fc919c0fb4eaa4f5d56a3d1d047543 812 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 650 753 4.9E-7 T 22-04-2016 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 PP4_RS23140 c4fc919c0fb4eaa4f5d56a3d1d047543 812 SUPERFAMILY SSF54211 566 757 3.79E-33 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PP4_RS23140 c4fc919c0fb4eaa4f5d56a3d1d047543 812 Gene3D G3DSA:3.30.230.10 558 756 1.1E-29 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PP4_RS23140 c4fc919c0fb4eaa4f5d56a3d1d047543 812 SUPERFAMILY SSF52540 307 535 1.68E-14 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23140 c4fc919c0fb4eaa4f5d56a3d1d047543 812 SUPERFAMILY SSF52540 35 109 1.68E-14 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26415 b78a6224a64f6c0b5077691fd21493f1 335 ProSitePatterns PS00757 Prokaryotic sulfate-binding proteins signature 2. 150 158 - T 22-04-2016 IPR000957 Sulphate/thiosulphate-binding, conserved site GO:0008271|GO:0008272|GO:0030288 PP4_RS26415 b78a6224a64f6c0b5077691fd21493f1 335 SUPERFAMILY SSF53850 26 333 5.15E-84 T 22-04-2016 PP4_RS26415 b78a6224a64f6c0b5077691fd21493f1 335 PANTHER PTHR30368:SF2 1 335 3.5E-172 T 22-04-2016 PP4_RS26415 b78a6224a64f6c0b5077691fd21493f1 335 Gene3D G3DSA:3.40.190.10 119 282 5.8E-72 T 22-04-2016 PP4_RS26415 b78a6224a64f6c0b5077691fd21493f1 335 Pfam PF13531 Bacterial extracellular solute-binding protein 45 285 2.5E-43 T 22-04-2016 PP4_RS26415 b78a6224a64f6c0b5077691fd21493f1 335 PANTHER PTHR30368 1 335 3.5E-172 T 22-04-2016 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 PP4_RS26415 b78a6224a64f6c0b5077691fd21493f1 335 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 17 331 1.9E-134 T 22-04-2016 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 PP4_RS19925 56e1c04f909f0d302048f9b320c5325f 196 Pfam PF00857 Isochorismatase family 25 187 2.6E-37 T 22-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PP4_RS19925 56e1c04f909f0d302048f9b320c5325f 196 PANTHER PTHR11080 1 196 9.6E-59 T 22-04-2016 PP4_RS19925 56e1c04f909f0d302048f9b320c5325f 196 PANTHER PTHR11080:SF17 1 196 9.6E-59 T 22-04-2016 PP4_RS19925 56e1c04f909f0d302048f9b320c5325f 196 Gene3D G3DSA:3.40.50.850 9 196 9.6E-52 T 22-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PP4_RS19925 56e1c04f909f0d302048f9b320c5325f 196 SUPERFAMILY SSF52499 2 196 1.31E-49 T 22-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PP4_RS27325 c18ba11312c7c118c9afd3acb05ec0c0 301 PANTHER PTHR36445:SF1 1 297 2.1E-81 T 22-04-2016 PP4_RS27325 c18ba11312c7c118c9afd3acb05ec0c0 301 Gene3D G3DSA:3.10.270.10 191 293 5.0E-78 T 22-04-2016 PP4_RS27325 c18ba11312c7c118c9afd3acb05ec0c0 301 Gene3D G3DSA:3.10.270.10 5 158 5.0E-78 T 22-04-2016 PP4_RS27325 c18ba11312c7c118c9afd3acb05ec0c0 301 Hamap MF_01527_B GTP cyclohydrolase FolE2 [folE2]. 6 294 34.055 T 22-04-2016 IPR022838 GTP cyclohydrolase FolE2 GO:0003934|GO:0035998 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 PP4_RS27325 c18ba11312c7c118c9afd3acb05ec0c0 301 Pfam PF02649 Type I GTP cyclohydrolase folE2 6 289 2.5E-72 T 22-04-2016 IPR003801 GTP cyclohydrolase FolE2/MptA GO:0003933 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|UniPathway: UPA00848 PP4_RS27325 c18ba11312c7c118c9afd3acb05ec0c0 301 PANTHER PTHR36445 1 297 2.1E-81 T 22-04-2016 PP4_RS11620 d6ce0e5cd5929ea65edf5660982c69a4 171 PANTHER PTHR33778 1 165 3.6E-48 T 22-04-2016 PP4_RS11620 d6ce0e5cd5929ea65edf5660982c69a4 171 PRINTS PR01837 MgtC/SapB protein signature 77 99 6.4E-41 T 22-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 PP4_RS11620 d6ce0e5cd5929ea65edf5660982c69a4 171 PRINTS PR01837 MgtC/SapB protein signature 108 132 6.4E-41 T 22-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 PP4_RS11620 d6ce0e5cd5929ea65edf5660982c69a4 171 PRINTS PR01837 MgtC/SapB protein signature 31 50 6.4E-41 T 22-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 PP4_RS11620 d6ce0e5cd5929ea65edf5660982c69a4 171 PRINTS PR01837 MgtC/SapB protein signature 50 68 6.4E-41 T 22-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 PP4_RS11620 d6ce0e5cd5929ea65edf5660982c69a4 171 Pfam PF02308 MgtC family 28 150 8.7E-38 T 22-04-2016 IPR003416 MgtC/SapB/SrpB/YhiD family GO:0016020 PP4_RS23270 913a5f9d0d6de2e69c37e507b721e8f6 136 PANTHER PTHR30093 1 55 3.3E-13 T 22-04-2016 PP4_RS23270 913a5f9d0d6de2e69c37e507b721e8f6 136 PRINTS PR00813 Bacterial general secretion pathway protein G signature 6 31 3.5E-9 T 22-04-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 PP4_RS23270 913a5f9d0d6de2e69c37e507b721e8f6 136 PRINTS PR00813 Bacterial general secretion pathway protein G signature 42 60 3.5E-9 T 22-04-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 PP4_RS23270 913a5f9d0d6de2e69c37e507b721e8f6 136 SUPERFAMILY SSF54523 8 134 3.66E-23 T 22-04-2016 PP4_RS23270 913a5f9d0d6de2e69c37e507b721e8f6 136 Pfam PF13633 Prokaryotic N-terminal methylation site 4 30 1.4E-9 T 22-04-2016 IPR012902 Prokaryotic N-terminal methylation site PP4_RS23270 913a5f9d0d6de2e69c37e507b721e8f6 136 Pfam PF00114 Pilin (bacterial filament) 35 134 1.1E-19 T 22-04-2016 IPR001082 Fimbrial protein pilin GO:0007155|GO:0009289 PP4_RS23270 913a5f9d0d6de2e69c37e507b721e8f6 136 Gene3D G3DSA:3.30.700.10 28 134 5.0E-25 T 22-04-2016 PP4_RS23270 913a5f9d0d6de2e69c37e507b721e8f6 136 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 4 27 7.7E-8 T 22-04-2016 IPR012902 Prokaryotic N-terminal methylation site PP4_RS23270 913a5f9d0d6de2e69c37e507b721e8f6 136 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 22-04-2016 IPR012902 Prokaryotic N-terminal methylation site PP4_RS01775 65c794e3bb9a0ae1032a9ebf3f139ae0 417 Gene3D G3DSA:3.90.1150.10 286 416 7.7E-54 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS01775 65c794e3bb9a0ae1032a9ebf3f139ae0 417 Gene3D G3DSA:3.40.640.10 37 285 1.1E-107 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS01775 65c794e3bb9a0ae1032a9ebf3f139ae0 417 PIRSF PIRSF000412 1 415 1.9E-168 T 22-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 PP4_RS01775 65c794e3bb9a0ae1032a9ebf3f139ae0 417 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 222 238 - T 22-04-2016 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0004372|GO:0006544|GO:0006563|GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 PP4_RS01775 65c794e3bb9a0ae1032a9ebf3f139ae0 417 SUPERFAMILY SSF53383 8 416 5.9E-181 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS01775 65c794e3bb9a0ae1032a9ebf3f139ae0 417 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 417 52.662 T 22-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 PP4_RS01775 65c794e3bb9a0ae1032a9ebf3f139ae0 417 Pfam PF00464 Serine hydroxymethyltransferase 9 386 7.3E-181 T 22-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 PP4_RS01775 65c794e3bb9a0ae1032a9ebf3f139ae0 417 PANTHER PTHR11680:SF9 1 416 0.0 T 22-04-2016 PP4_RS01775 65c794e3bb9a0ae1032a9ebf3f139ae0 417 PANTHER PTHR11680 1 416 0.0 T 22-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 PP4_RS09945 5219058246a804219d72b60a0923b302 92 PRINTS PR00598 Bacterial regulatory protein MarR family signature 39 55 1.2E-8 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS09945 5219058246a804219d72b60a0923b302 92 PRINTS PR00598 Bacterial regulatory protein MarR family signature 3 19 1.2E-8 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS09945 5219058246a804219d72b60a0923b302 92 PRINTS PR00598 Bacterial regulatory protein MarR family signature 20 35 1.2E-8 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS09945 5219058246a804219d72b60a0923b302 92 PRINTS PR00598 Bacterial regulatory protein MarR family signature 69 89 1.2E-8 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS09945 5219058246a804219d72b60a0923b302 92 SUPERFAMILY SSF46785 3 91 2.23E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS09945 5219058246a804219d72b60a0923b302 92 SMART SM00347 1 79 0.0037 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS09945 5219058246a804219d72b60a0923b302 92 Gene3D G3DSA:1.10.10.10 3 91 4.7E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS12300 9e6bb50e3c4c3785a31ede6c9284a3b8 641 Gene3D G3DSA:3.10.105.10 357 390 4.6E-43 T 22-04-2016 PP4_RS12300 9e6bb50e3c4c3785a31ede6c9284a3b8 641 Gene3D G3DSA:3.10.105.10 423 593 4.6E-43 T 22-04-2016 PP4_RS12300 9e6bb50e3c4c3785a31ede6c9284a3b8 641 SUPERFAMILY SSF53850 77 622 4.94E-102 T 22-04-2016 PP4_RS12300 9e6bb50e3c4c3785a31ede6c9284a3b8 641 Gene3D G3DSA:3.40.190.10 243 356 4.9E-20 T 22-04-2016 PP4_RS12300 9e6bb50e3c4c3785a31ede6c9284a3b8 641 PANTHER PTHR30290 23 388 2.0E-158 T 22-04-2016 PP4_RS12300 9e6bb50e3c4c3785a31ede6c9284a3b8 641 PANTHER PTHR30290 413 633 2.0E-158 T 22-04-2016 PP4_RS12300 9e6bb50e3c4c3785a31ede6c9284a3b8 641 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 129 537 1.5E-63 T 22-04-2016 IPR000914 Solute-binding protein family 5 domain PP4_RS12300 9e6bb50e3c4c3785a31ede6c9284a3b8 641 PANTHER PTHR30290:SF2 23 388 2.0E-158 T 22-04-2016 PP4_RS12300 9e6bb50e3c4c3785a31ede6c9284a3b8 641 PANTHER PTHR30290:SF2 413 633 2.0E-158 T 22-04-2016 PP4_RS12300 9e6bb50e3c4c3785a31ede6c9284a3b8 641 PIRSF PIRSF002741 36 626 7.1E-88 T 22-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 PP4_RS12300 9e6bb50e3c4c3785a31ede6c9284a3b8 641 Gene3D G3DSA:3.90.76.10 95 242 4.4E-28 T 22-04-2016 PP4_RS17505 5e9ac9698429839d4ee5ba664bc0c8a3 238 Gene3D G3DSA:1.10.10.10 13 80 4.3E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS17505 5e9ac9698429839d4ee5ba664bc0c8a3 238 PANTHER PTHR11751:SF426 19 106 3.2E-59 T 22-04-2016 PP4_RS17505 5e9ac9698429839d4ee5ba664bc0c8a3 238 Gene3D G3DSA:1.20.120.530 84 226 1.1E-32 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PP4_RS17505 5e9ac9698429839d4ee5ba664bc0c8a3 238 SUPERFAMILY SSF46785 15 107 1.82E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS17505 5e9ac9698429839d4ee5ba664bc0c8a3 238 PANTHER PTHR11751 19 106 3.2E-59 T 22-04-2016 PP4_RS17505 5e9ac9698429839d4ee5ba664bc0c8a3 238 SUPERFAMILY SSF48008 87 224 1.75E-28 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PP4_RS17505 5e9ac9698429839d4ee5ba664bc0c8a3 238 SMART SM00345 22 80 6.5E-14 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS17505 5e9ac9698429839d4ee5ba664bc0c8a3 238 Pfam PF00392 Bacterial regulatory proteins, gntR family 18 80 2.5E-16 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS17505 5e9ac9698429839d4ee5ba664bc0c8a3 238 Pfam PF07729 FCD domain 90 216 3.0E-30 T 22-04-2016 IPR011711 GntR, C-terminal PP4_RS17505 5e9ac9698429839d4ee5ba664bc0c8a3 238 SMART SM00895 90 217 1.4E-26 T 22-04-2016 IPR011711 GntR, C-terminal PP4_RS20305 fd016e18fe7c690e91ab597e8de590f6 244 SUPERFAMILY SSF49354 24 162 5.76E-9 T 22-04-2016 IPR008962 PapD-like PP4_RS14805 dfc70c506fad98e097c23d7e12b379ec 243 Pfam PF00106 short chain dehydrogenase 6 195 2.0E-35 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS14805 dfc70c506fad98e097c23d7e12b379ec 243 SUPERFAMILY SSF51735 2 233 6.18E-46 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS14805 dfc70c506fad98e097c23d7e12b379ec 243 PANTHER PTHR24322 10 138 3.3E-60 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS14805 dfc70c506fad98e097c23d7e12b379ec 243 PANTHER PTHR24322 154 186 3.3E-60 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS14805 dfc70c506fad98e097c23d7e12b379ec 243 PANTHER PTHR24322:SF360 10 138 3.3E-60 T 22-04-2016 PP4_RS14805 dfc70c506fad98e097c23d7e12b379ec 243 PANTHER PTHR24322:SF360 154 186 3.3E-60 T 22-04-2016 PP4_RS14805 dfc70c506fad98e097c23d7e12b379ec 243 Gene3D G3DSA:3.40.50.720 5 227 1.3E-45 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS14805 dfc70c506fad98e097c23d7e12b379ec 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 6.2E-12 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS14805 dfc70c506fad98e097c23d7e12b379ec 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 6.2E-12 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS14805 dfc70c506fad98e097c23d7e12b379ec 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 6.2E-12 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS14805 dfc70c506fad98e097c23d7e12b379ec 243 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 6.2E-12 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS04705 867876ca442ee0cfc8a15616ffac37ac 400 Pfam PF00108 Thiolase, N-terminal domain 4 267 4.8E-79 T 22-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 PP4_RS04705 867876ca442ee0cfc8a15616ffac37ac 400 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 398 4.7E-135 T 22-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 PP4_RS04705 867876ca442ee0cfc8a15616ffac37ac 400 PANTHER PTHR18919 1 400 1.1E-245 T 22-04-2016 PP4_RS04705 867876ca442ee0cfc8a15616ffac37ac 400 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 86 104 - T 22-04-2016 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Reactome: REACT_22258 PP4_RS04705 867876ca442ee0cfc8a15616ffac37ac 400 ProSitePatterns PS00737 Thiolases signature 2. 346 362 - T 22-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 PP4_RS04705 867876ca442ee0cfc8a15616ffac37ac 400 PANTHER PTHR18919:SF91 1 400 1.1E-245 T 22-04-2016 PP4_RS04705 867876ca442ee0cfc8a15616ffac37ac 400 Pfam PF02803 Thiolase, C-terminal domain 276 399 8.2E-42 T 22-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 PP4_RS04705 867876ca442ee0cfc8a15616ffac37ac 400 PIRSF PIRSF000429 1 400 3.8E-136 T 22-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 PP4_RS04705 867876ca442ee0cfc8a15616ffac37ac 400 TIGRFAM TIGR02430 pcaF: 3-oxoadipyl-CoA thiolase 2 400 6.4E-221 T 22-04-2016 IPR012793 Beta-ketoadipyl CoA thiolase GO:0016747|GO:0019619 KEGG: 00250+2.3.1.17|KEGG: 00360+2.3.1.174|KEGG: 00362+2.3.1.174|MetaCyc: PWY-1361|MetaCyc: PWY-2361|MetaCyc: PWY-6185 PP4_RS04705 867876ca442ee0cfc8a15616ffac37ac 400 SUPERFAMILY SSF53901 276 399 1.07E-43 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS04705 867876ca442ee0cfc8a15616ffac37ac 400 SUPERFAMILY SSF53901 3 275 6.51E-88 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS04705 867876ca442ee0cfc8a15616ffac37ac 400 Gene3D G3DSA:3.40.47.10 154 199 7.0E-58 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS04705 867876ca442ee0cfc8a15616ffac37ac 400 Gene3D G3DSA:3.40.47.10 282 399 7.0E-58 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS04705 867876ca442ee0cfc8a15616ffac37ac 400 Gene3D G3DSA:3.40.47.10 3 125 2.7E-72 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS04705 867876ca442ee0cfc8a15616ffac37ac 400 Gene3D G3DSA:3.40.47.10 200 281 2.7E-72 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS04705 867876ca442ee0cfc8a15616ffac37ac 400 ProSitePatterns PS00099 Thiolases active site. 381 394 - T 22-04-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 PP4_RS13505 88aa613e1649dd0e33c3a742ef820619 345 PANTHER PTHR21266 15 345 3.5E-66 T 22-04-2016 PP4_RS13505 88aa613e1649dd0e33c3a742ef820619 345 SUPERFAMILY SSF50022 13 128 6.68E-30 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 PP4_RS13505 88aa613e1649dd0e33c3a742ef820619 345 PANTHER PTHR21266:SF31 15 345 3.5E-66 T 22-04-2016 PP4_RS13505 88aa613e1649dd0e33c3a742ef820619 345 Pfam PF00355 Rieske [2Fe-2S] domain 21 103 8.8E-18 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 PP4_RS13505 88aa613e1649dd0e33c3a742ef820619 345 SUPERFAMILY SSF55961 119 328 1.3E-21 T 22-04-2016 PP4_RS13505 88aa613e1649dd0e33c3a742ef820619 345 Gene3D G3DSA:2.102.10.10 19 133 1.9E-29 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 SUPERFAMILY SSF56801 1093 1643 9.94E-151 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 SUPERFAMILY SSF47336 2693 2764 4.06E-19 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 SMART SM00823 Phosphopantetheine attachment site 4226 4295 5.3E-7 T 22-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 SMART SM00823 Phosphopantetheine attachment site 2700 2768 0.016 T 22-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 SMART SM00823 Phosphopantetheine attachment site 586 638 0.11 T 22-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 SMART SM00823 Phosphopantetheine attachment site 1630 1699 0.051 T 22-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 SUPERFAMILY SSF52777 2953 3208 5.23E-47 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Gene3D G3DSA:1.10.1200.10 4230 4295 3.5E-29 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Gene3D G3DSA:1.10.1200.10 2704 2768 6.8E-28 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Gene3D G3DSA:1.10.1200.10 578 653 1.2E-17 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Gene3D G3DSA:1.10.1200.10 1634 1698 6.0E-25 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 SUPERFAMILY SSF47336 4218 4291 7.07E-21 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Gene3D G3DSA:3.40.50.980 1126 1280 3.2E-48 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Gene3D G3DSA:3.40.50.980 3703 3865 2.9E-37 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Gene3D G3DSA:3.40.50.980 2176 2336 2.0E-52 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 ProSitePatterns PS00455 Putative AMP-binding domain signature. 2327 2338 - T 22-04-2016 IPR020845 AMP-binding, conserved site PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1272 1283 - T 22-04-2016 IPR020845 AMP-binding, conserved site PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 ProSitePatterns PS00455 Putative AMP-binding domain signature. 3857 3868 - T 22-04-2016 IPR020845 AMP-binding, conserved site PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Pfam PF00550 Phosphopantetheine attachment site 1631 1695 1.5E-11 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Pfam PF00550 Phosphopantetheine attachment site 4228 4291 1.2E-15 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Pfam PF00550 Phosphopantetheine attachment site 2702 2763 5.4E-15 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Pfam PF00550 Phosphopantetheine attachment site 588 650 6.7E-10 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Gene3D G3DSA:3.30.300.30 448 555 3.7E-16 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Pfam PF00668 Condensation domain 672 964 6.9E-74 T 22-04-2016 IPR001242 Condensation domain PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Pfam PF00668 Condensation domain 1717 2017 7.1E-69 T 22-04-2016 IPR001242 Condensation domain PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Pfam PF00668 Condensation domain 3240 3541 2.6E-62 T 22-04-2016 IPR001242 Condensation domain PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Pfam PF00668 Condensation domain 2779 3069 7.9E-63 T 22-04-2016 IPR001242 Condensation domain PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Gene3D G3DSA:3.40.50.980 10 175 6.3E-33 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 SUPERFAMILY SSF47336 583 651 3.66E-13 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 SUPERFAMILY SSF52777 1721 1898 7.78E-51 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 PANTHER PTHR24095 3217 4199 0.0 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 PANTHER PTHR24095 3187 3200 0.0 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 PANTHER PTHR24095 1303 2755 0.0 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 3081 3232 1.1E-44 T 22-04-2016 IPR010060 Non-ribosomal peptide synthase PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 SUPERFAMILY SSF52777 1906 2147 6.34E-58 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 SUPERFAMILY SSF52777 3245 3422 2.11E-43 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 SUPERFAMILY SSF56801 8 566 8.11E-119 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Pfam PF00501 AMP-binding enzyme 3709 4114 5.0E-79 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Pfam PF00501 AMP-binding enzyme 2183 2586 1.5E-87 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Pfam PF00501 AMP-binding enzyme 1132 1528 2.0E-96 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Pfam PF00501 AMP-binding enzyme 16 457 2.6E-88 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Gene3D G3DSA:3.30.300.30 1523 1633 1.7E-33 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Gene3D G3DSA:3.30.300.30 2581 2703 3.1E-38 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Gene3D G3DSA:3.30.300.30 4109 4229 5.1E-38 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2724 2739 - T 22-04-2016 IPR006162 Phosphopantetheine attachment site PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 ProSitePatterns PS00012 Phosphopantetheine attachment site. 4250 4265 - T 22-04-2016 IPR006162 Phosphopantetheine attachment site PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 ProSitePatterns PS00012 Phosphopantetheine attachment site. 610 625 - T 22-04-2016 IPR006162 Phosphopantetheine attachment site PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 SUPERFAMILY SSF47336 1623 1695 1.01E-17 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 PANTHER PTHR24095:SF173 3217 4199 0.0 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 PANTHER PTHR24095:SF173 3187 3200 0.0 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 PANTHER PTHR24095:SF173 1303 2755 0.0 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 SUPERFAMILY SSF56801 3673 4238 2.62E-139 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Gene3D G3DSA:2.30.38.10 370 446 6.0E-22 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 SUPERFAMILY SSF52777 677 849 2.11E-48 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 SUPERFAMILY SSF52777 2778 2967 1.56E-38 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 SUPERFAMILY SSF52777 855 1096 1.22E-57 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 2204 2610 2.7E-124 T 22-04-2016 IPR010071 Amino acid adenylation domain PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 3731 4138 2.3E-119 T 22-04-2016 IPR010071 Amino acid adenylation domain PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1153 1552 3.5E-128 T 22-04-2016 IPR010071 Amino acid adenylation domain PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Pfam PF13745 HxxPF-repeated domain 2039 2130 3.4E-25 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Pfam PF13745 HxxPF-repeated domain 990 1079 2.4E-21 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Gene3D G3DSA:2.30.38.10 1441 1509 2.1E-21 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Gene3D G3DSA:2.30.38.10 4024 4104 3.5E-21 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Gene3D G3DSA:2.30.38.10 2495 2576 2.8E-22 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Gene3D G3DSA:3.40.50.980 2337 2482 6.5E-36 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Gene3D G3DSA:3.40.50.980 176 340 4.1E-32 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Gene3D G3DSA:3.40.50.980 3866 4023 3.9E-41 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Gene3D G3DSA:3.40.50.980 1281 1440 4.6E-46 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Pfam PF13193 AMP-binding enzyme C-terminal domain 2594 2674 5.0E-10 T 22-04-2016 IPR025110 AMP-binding enzyme C-terminal domain PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 Pfam PF13193 AMP-binding enzyme C-terminal domain 4122 4199 3.1E-7 T 22-04-2016 IPR025110 AMP-binding enzyme C-terminal domain PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 SUPERFAMILY SSF52777 3425 3677 5.56E-48 T 22-04-2016 PP4_RS07795 0434bf6c11df44176754f942abecbfce 4317 SUPERFAMILY SSF56801 2142 2713 1.57E-149 T 22-04-2016 PP4_RS17095 d65464f67f50df161ddc7e35f607cced 445 ProSitePatterns PS00217 Sugar transport proteins signature 2. 125 150 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PP4_RS17095 d65464f67f50df161ddc7e35f607cced 445 Gene3D G3DSA:1.20.1250.20 241 425 9.6E-24 T 22-04-2016 PP4_RS17095 d65464f67f50df161ddc7e35f607cced 445 Gene3D G3DSA:1.20.1250.20 14 219 1.3E-26 T 22-04-2016 PP4_RS17095 d65464f67f50df161ddc7e35f607cced 445 Pfam PF07690 Major Facilitator Superfamily 20 385 4.9E-34 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS17095 d65464f67f50df161ddc7e35f607cced 445 ProSitePatterns PS00216 Sugar transport proteins signature 1. 296 312 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PP4_RS17095 d65464f67f50df161ddc7e35f607cced 445 SUPERFAMILY SSF103473 13 429 7.06E-72 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS17095 d65464f67f50df161ddc7e35f607cced 445 PANTHER PTHR23508:SF1 13 442 1.2E-137 T 22-04-2016 PP4_RS17095 d65464f67f50df161ddc7e35f607cced 445 PANTHER PTHR23508 13 442 1.2E-137 T 22-04-2016 PP4_RS12180 cf6b1ebaa136f46e0bdb3918ceb2f434 233 Gene3D G3DSA:3.40.50.2300 1 125 7.4E-40 T 22-04-2016 PP4_RS12180 cf6b1ebaa136f46e0bdb3918ceb2f434 233 Pfam PF00072 Response regulator receiver domain 4 113 4.2E-29 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS12180 cf6b1ebaa136f46e0bdb3918ceb2f434 233 SUPERFAMILY SSF52172 1 125 5.98E-39 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS12180 cf6b1ebaa136f46e0bdb3918ceb2f434 233 SUPERFAMILY SSF46894 126 226 9.35E-28 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS12180 cf6b1ebaa136f46e0bdb3918ceb2f434 233 Gene3D G3DSA:1.10.10.10 130 227 7.6E-31 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS12180 cf6b1ebaa136f46e0bdb3918ceb2f434 233 SMART SM00862 150 226 5.7E-23 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS12180 cf6b1ebaa136f46e0bdb3918ceb2f434 233 SMART SM00448 2 113 1.1E-39 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS12180 cf6b1ebaa136f46e0bdb3918ceb2f434 233 PANTHER PTHR26402 2 226 3.1E-89 T 22-04-2016 PP4_RS12180 cf6b1ebaa136f46e0bdb3918ceb2f434 233 PANTHER PTHR26402:SF292 2 226 3.1E-89 T 22-04-2016 PP4_RS12180 cf6b1ebaa136f46e0bdb3918ceb2f434 233 Pfam PF00486 Transcriptional regulatory protein, C terminal 150 226 7.0E-23 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS20260 08975c520c08bc889f4cca47738fa3c2 581 Pfam PF00583 Acetyltransferase (GNAT) family 164 246 9.9E-15 T 22-04-2016 IPR000182 GNAT domain GO:0008080 PP4_RS20260 08975c520c08bc889f4cca47738fa3c2 581 TIGRFAM TIGR03103 trio_acet_GNAT: GNAT-family acetyltransferase TIGR03103 36 579 8.8E-288 T 22-04-2016 IPR017534 GNAT-acetyltransferase PP4_RS20260 08975c520c08bc889f4cca47738fa3c2 581 SUPERFAMILY SSF56059 330 440 3.05E-28 T 22-04-2016 PP4_RS20260 08975c520c08bc889f4cca47738fa3c2 581 SUPERFAMILY SSF56059 497 574 3.05E-28 T 22-04-2016 PP4_RS20260 08975c520c08bc889f4cca47738fa3c2 581 Gene3D G3DSA:3.30.470.20 320 337 7.1E-14 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PP4_RS20260 08975c520c08bc889f4cca47738fa3c2 581 Gene3D G3DSA:3.30.470.20 407 434 7.1E-14 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PP4_RS20260 08975c520c08bc889f4cca47738fa3c2 581 Gene3D G3DSA:3.30.470.20 487 575 7.1E-14 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PP4_RS20260 08975c520c08bc889f4cca47738fa3c2 581 Pfam PF08443 RimK-like ATP-grasp domain 329 430 3.6E-5 T 22-04-2016 IPR013651 ATP-grasp fold, RimK-type PP4_RS20260 08975c520c08bc889f4cca47738fa3c2 581 PANTHER PTHR23091 91 264 1.5E-40 T 22-04-2016 PP4_RS20260 08975c520c08bc889f4cca47738fa3c2 581 SUPERFAMILY SSF55729 75 251 2.62E-23 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS20260 08975c520c08bc889f4cca47738fa3c2 581 Gene3D G3DSA:3.30.1490.20 341 406 3.7E-7 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 PP4_RS20260 08975c520c08bc889f4cca47738fa3c2 581 Gene3D G3DSA:3.40.630.30 118 250 4.8E-19 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS20260 08975c520c08bc889f4cca47738fa3c2 581 PANTHER PTHR23091:SF122 91 264 1.5E-40 T 22-04-2016 PP4_RS02620 81645158f698f3140c0336b82f9b0cc5 129 PANTHER PTHR11759 11 129 6.3E-71 T 22-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 PP4_RS02620 81645158f698f3140c0336b82f9b0cc5 129 ProSitePatterns PS00054 Ribosomal protein S11 signature. 97 119 - T 22-04-2016 IPR018102 Ribosomal S11, conserved site PP4_RS02620 81645158f698f3140c0336b82f9b0cc5 129 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 129 32.725 T 22-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 PP4_RS02620 81645158f698f3140c0336b82f9b0cc5 129 PIRSF PIRSF002131 1 129 6.9E-54 T 22-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 PP4_RS02620 81645158f698f3140c0336b82f9b0cc5 129 Pfam PF00411 Ribosomal protein S11 19 128 4.4E-51 T 22-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 PP4_RS02620 81645158f698f3140c0336b82f9b0cc5 129 SUPERFAMILY SSF53137 15 129 3.66E-47 T 22-04-2016 PP4_RS02620 81645158f698f3140c0336b82f9b0cc5 129 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 10 126 1.3E-55 T 22-04-2016 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02620 81645158f698f3140c0336b82f9b0cc5 129 Gene3D G3DSA:3.30.420.80 9 129 1.1E-53 T 22-04-2016 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 PP4_RS03775 74d34554522ae4366b4aaf9b38f4945d 304 Gene3D G3DSA:3.40.50.720 3 259 3.6E-68 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS03775 74d34554522ae4366b4aaf9b38f4945d 304 PANTHER PTHR24322:SF530 164 195 9.4E-62 T 22-04-2016 PP4_RS03775 74d34554522ae4366b4aaf9b38f4945d 304 PANTHER PTHR24322:SF530 57 148 9.4E-62 T 22-04-2016 PP4_RS03775 74d34554522ae4366b4aaf9b38f4945d 304 PANTHER PTHR24322:SF530 14 33 9.4E-62 T 22-04-2016 PP4_RS03775 74d34554522ae4366b4aaf9b38f4945d 304 PANTHER PTHR24322 164 195 9.4E-62 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03775 74d34554522ae4366b4aaf9b38f4945d 304 PANTHER PTHR24322 57 148 9.4E-62 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03775 74d34554522ae4366b4aaf9b38f4945d 304 PANTHER PTHR24322 14 33 9.4E-62 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03775 74d34554522ae4366b4aaf9b38f4945d 304 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 1.7E-25 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03775 74d34554522ae4366b4aaf9b38f4945d 304 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 138 154 1.7E-25 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03775 74d34554522ae4366b4aaf9b38f4945d 304 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 164 183 1.7E-25 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03775 74d34554522ae4366b4aaf9b38f4945d 304 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 185 202 1.7E-25 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03775 74d34554522ae4366b4aaf9b38f4945d 304 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 91 102 1.7E-25 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03775 74d34554522ae4366b4aaf9b38f4945d 304 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 1.7E-25 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03775 74d34554522ae4366b4aaf9b38f4945d 304 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 151 179 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PP4_RS03775 74d34554522ae4366b4aaf9b38f4945d 304 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 10 184 1.9E-5 T 22-04-2016 PP4_RS03775 74d34554522ae4366b4aaf9b38f4945d 304 Pfam PF00106 short chain dehydrogenase 11 196 3.1E-42 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03775 74d34554522ae4366b4aaf9b38f4945d 304 SUPERFAMILY SSF51735 5 251 1.12E-66 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS03775 74d34554522ae4366b4aaf9b38f4945d 304 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 91 102 1.6E-8 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03775 74d34554522ae4366b4aaf9b38f4945d 304 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 183 1.6E-8 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03775 74d34554522ae4366b4aaf9b38f4945d 304 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 152 1.6E-8 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS18190 52b888f95c9efc9c343f511e14c772b2 142 SUPERFAMILY SSF52833 13 93 5.0E-7 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS18190 52b888f95c9efc9c343f511e14c772b2 142 Pfam PF04214 Protein of unknown function, DUF 49 116 6.4E-29 T 22-04-2016 IPR007332 Protein of unknown function DUF411 PP4_RS26090 f5eb4ee2d9bced3fa2e0924a3a0a4b94 451 Pfam PF05193 Peptidase M16 inactive domain 196 378 5.8E-28 T 22-04-2016 IPR007863 Peptidase M16, C-terminal PP4_RS26090 f5eb4ee2d9bced3fa2e0924a3a0a4b94 451 Gene3D G3DSA:3.30.830.10 26 245 2.2E-58 T 22-04-2016 IPR011237 Peptidase M16 domain GO:0046872 PP4_RS26090 f5eb4ee2d9bced3fa2e0924a3a0a4b94 451 Pfam PF00675 Insulinase (Peptidase family M16) 40 168 2.6E-21 T 22-04-2016 IPR011765 Peptidase M16, N-terminal PP4_RS26090 f5eb4ee2d9bced3fa2e0924a3a0a4b94 451 Gene3D G3DSA:3.30.830.10 265 442 2.1E-25 T 22-04-2016 IPR011237 Peptidase M16 domain GO:0046872 PP4_RS26090 f5eb4ee2d9bced3fa2e0924a3a0a4b94 451 SUPERFAMILY SSF63411 256 449 2.39E-32 T 22-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 PP4_RS26090 f5eb4ee2d9bced3fa2e0924a3a0a4b94 451 PANTHER PTHR11851 26 437 1.2E-102 T 22-04-2016 PP4_RS26090 f5eb4ee2d9bced3fa2e0924a3a0a4b94 451 SUPERFAMILY SSF63411 26 244 3.3E-62 T 22-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 PP4_RS26090 f5eb4ee2d9bced3fa2e0924a3a0a4b94 451 PANTHER PTHR11851:SF136 26 437 1.2E-102 T 22-04-2016 PP4_RS21720 d149087abb185779aa5df78c751d6a94 475 PANTHER PTHR11785:SF77 6 443 6.0E-227 T 22-04-2016 PP4_RS21720 d149087abb185779aa5df78c751d6a94 475 TIGRFAM TIGR03810 arg_ornith_anti: arginine-ornithine antiporter 6 475 7.7E-222 T 22-04-2016 IPR022461 Arginine/ornithine antiporter GO:0005887|GO:0006527|GO:0043858 PP4_RS21720 d149087abb185779aa5df78c751d6a94 475 Pfam PF13520 Amino acid permease 12 415 7.0E-74 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS21720 d149087abb185779aa5df78c751d6a94 475 PIRSF PIRSF006060 1 471 2.1E-47 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS21720 d149087abb185779aa5df78c751d6a94 475 PANTHER PTHR11785 6 443 6.0E-227 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS21720 d149087abb185779aa5df78c751d6a94 475 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 2 475 1.5E-185 T 22-04-2016 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 PP4_RS25065 d5c94dd1bb09d7f11957c737415b983e 511 SUPERFAMILY SSF109604 21 217 2.73E-22 T 22-04-2016 PP4_RS25065 d5c94dd1bb09d7f11957c737415b983e 511 SUPERFAMILY SSF109604 245 302 2.73E-22 T 22-04-2016 PP4_RS25065 d5c94dd1bb09d7f11957c737415b983e 511 Pfam PF08668 HDOD domain 27 210 1.5E-10 T 22-04-2016 IPR013976 Metal-dependent hydrolase HDOD PP4_RS25065 d5c94dd1bb09d7f11957c737415b983e 511 Gene3D G3DSA:1.10.3150.10 20 302 2.9E-14 T 22-04-2016 IPR013976 Metal-dependent hydrolase HDOD PP4_RS02890 92ef5089ce0c2434ac7f459dcd6c83c4 631 SUPERFAMILY SSF52518 325 511 3.95E-56 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS02890 92ef5089ce0c2434ac7f459dcd6c83c4 631 Gene3D G3DSA:3.40.50.970 342 502 3.1E-32 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS02890 92ef5089ce0c2434ac7f459dcd6c83c4 631 Gene3D G3DSA:3.40.50.970 249 341 2.0E-74 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS02890 92ef5089ce0c2434ac7f459dcd6c83c4 631 Gene3D G3DSA:3.40.50.970 33 208 2.0E-74 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS02890 92ef5089ce0c2434ac7f459dcd6c83c4 631 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 17 627 45.579 T 22-04-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 PP4_RS02890 92ef5089ce0c2434ac7f459dcd6c83c4 631 Pfam PF02779 Transketolase, pyrimidine binding domain 326 486 2.8E-37 T 22-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain PP4_RS02890 92ef5089ce0c2434ac7f459dcd6c83c4 631 Pfam PF02780 Transketolase, C-terminal domain 502 618 1.3E-26 T 22-04-2016 IPR033248 Transketolase, C-terminal domain PP4_RS02890 92ef5089ce0c2434ac7f459dcd6c83c4 631 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 18 289 2.5E-120 T 22-04-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 PP4_RS02890 92ef5089ce0c2434ac7f459dcd6c83c4 631 SUPERFAMILY SSF52922 498 626 2.62E-31 T 22-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 PP4_RS02890 92ef5089ce0c2434ac7f459dcd6c83c4 631 SMART SM00861 326 490 4.8E-63 T 22-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain PP4_RS02890 92ef5089ce0c2434ac7f459dcd6c83c4 631 PANTHER PTHR11624:SF20 31 225 2.0E-299 T 22-04-2016 PP4_RS02890 92ef5089ce0c2434ac7f459dcd6c83c4 631 PANTHER PTHR11624:SF20 248 628 2.0E-299 T 22-04-2016 PP4_RS02890 92ef5089ce0c2434ac7f459dcd6c83c4 631 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 22 626 3.8E-266 T 22-04-2016 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 PP4_RS02890 92ef5089ce0c2434ac7f459dcd6c83c4 631 SUPERFAMILY SSF52518 14 206 1.75E-76 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS02890 92ef5089ce0c2434ac7f459dcd6c83c4 631 PANTHER PTHR11624 31 225 2.0E-299 T 22-04-2016 IPR033247 Transketolase family PP4_RS02890 92ef5089ce0c2434ac7f459dcd6c83c4 631 PANTHER PTHR11624 248 628 2.0E-299 T 22-04-2016 IPR033247 Transketolase family PP4_RS02890 92ef5089ce0c2434ac7f459dcd6c83c4 631 ProSitePatterns PS00802 Transketolase signature 2. 432 448 - T 22-04-2016 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 PP4_RS02890 92ef5089ce0c2434ac7f459dcd6c83c4 631 SUPERFAMILY SSF52518 250 388 1.75E-76 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS02890 92ef5089ce0c2434ac7f459dcd6c83c4 631 Gene3D G3DSA:3.40.50.920 503 626 3.4E-34 T 22-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 PP4_RS02310 33beff9e2eeb9391306f9c823e30f280 214 SUPERFAMILY SSF46785 143 211 6.83E-15 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS02310 33beff9e2eeb9391306f9c823e30f280 214 Gene3D G3DSA:2.60.120.10 11 141 3.8E-38 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS02310 33beff9e2eeb9391306f9c823e30f280 214 SMART SM00100 1 126 1.8E-24 T 22-04-2016 IPR000595 Cyclic nucleotide-binding domain PP4_RS02310 33beff9e2eeb9391306f9c823e30f280 214 Pfam PF00027 Cyclic nucleotide-binding domain 22 114 6.2E-22 T 22-04-2016 IPR000595 Cyclic nucleotide-binding domain PP4_RS02310 33beff9e2eeb9391306f9c823e30f280 214 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 186 201 7.6E-8 T 22-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 PP4_RS02310 33beff9e2eeb9391306f9c823e30f280 214 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 170 186 7.6E-8 T 22-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 PP4_RS02310 33beff9e2eeb9391306f9c823e30f280 214 SUPERFAMILY SSF51206 13 140 8.9E-34 T 22-04-2016 IPR018490 Cyclic nucleotide-binding-like PP4_RS02310 33beff9e2eeb9391306f9c823e30f280 214 SMART SM00419 164 212 2.5E-13 T 22-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 PP4_RS02310 33beff9e2eeb9391306f9c823e30f280 214 ProSitePatterns PS00042 Crp-type HTH domain signature. 172 195 - T 22-04-2016 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 PP4_RS02310 33beff9e2eeb9391306f9c823e30f280 214 Pfam PF00325 Bacterial regulatory proteins, crp family 170 200 6.3E-14 T 22-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 PP4_RS02310 33beff9e2eeb9391306f9c823e30f280 214 Gene3D G3DSA:1.10.10.10 143 211 3.3E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS02310 33beff9e2eeb9391306f9c823e30f280 214 ProSitePatterns PS00889 Cyclic nucleotide-binding domain signature 2. 72 93 - T 22-04-2016 IPR018488 Cyclic nucleotide-binding, conserved site PP4_RS02310 33beff9e2eeb9391306f9c823e30f280 214 PANTHER PTHR24567:SF27 5 211 1.1E-123 T 22-04-2016 PP4_RS02310 33beff9e2eeb9391306f9c823e30f280 214 PANTHER PTHR24567 5 211 1.1E-123 T 22-04-2016 PP4_RS04985 8ed403ed0893cf795d7f4a5c2350ddb3 477 Pfam PF13180 PDZ domain 274 363 5.1E-16 T 22-04-2016 IPR001478 PDZ domain GO:0005515 PP4_RS04985 8ed403ed0893cf795d7f4a5c2350ddb3 477 Pfam PF13180 PDZ domain 388 469 3.6E-9 T 22-04-2016 IPR001478 PDZ domain GO:0005515 PP4_RS04985 8ed403ed0893cf795d7f4a5c2350ddb3 477 Gene3D G3DSA:2.40.10.10 88 165 3.8E-39 T 22-04-2016 PP4_RS04985 8ed403ed0893cf795d7f4a5c2350ddb3 477 Gene3D G3DSA:2.40.10.10 25 52 3.8E-39 T 22-04-2016 PP4_RS04985 8ed403ed0893cf795d7f4a5c2350ddb3 477 PANTHER PTHR22939 83 389 9.1E-145 T 22-04-2016 PP4_RS04985 8ed403ed0893cf795d7f4a5c2350ddb3 477 PANTHER PTHR22939 31 54 9.1E-145 T 22-04-2016 PP4_RS04985 8ed403ed0893cf795d7f4a5c2350ddb3 477 PANTHER PTHR22939:SF98 83 389 9.1E-145 T 22-04-2016 PP4_RS04985 8ed403ed0893cf795d7f4a5c2350ddb3 477 PANTHER PTHR22939:SF98 31 54 9.1E-145 T 22-04-2016 PP4_RS04985 8ed403ed0893cf795d7f4a5c2350ddb3 477 PRINTS PR00834 HtrA/DegQ protease family signature 313 325 6.4E-53 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 PP4_RS04985 8ed403ed0893cf795d7f4a5c2350ddb3 477 PRINTS PR00834 HtrA/DegQ protease family signature 131 151 6.4E-53 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 PP4_RS04985 8ed403ed0893cf795d7f4a5c2350ddb3 477 PRINTS PR00834 HtrA/DegQ protease family signature 205 222 6.4E-53 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 PP4_RS04985 8ed403ed0893cf795d7f4a5c2350ddb3 477 PRINTS PR00834 HtrA/DegQ protease family signature 171 195 6.4E-53 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 PP4_RS04985 8ed403ed0893cf795d7f4a5c2350ddb3 477 PRINTS PR00834 HtrA/DegQ protease family signature 227 244 6.4E-53 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 PP4_RS04985 8ed403ed0893cf795d7f4a5c2350ddb3 477 PRINTS PR00834 HtrA/DegQ protease family signature 110 122 6.4E-53 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 PP4_RS04985 8ed403ed0893cf795d7f4a5c2350ddb3 477 SUPERFAMILY SSF50494 11 52 5.34E-70 T 22-04-2016 IPR009003 Peptidase S1, PA clan PP4_RS04985 8ed403ed0893cf795d7f4a5c2350ddb3 477 SUPERFAMILY SSF50494 98 282 5.34E-70 T 22-04-2016 IPR009003 Peptidase S1, PA clan PP4_RS04985 8ed403ed0893cf795d7f4a5c2350ddb3 477 SUPERFAMILY SSF50156 244 368 1.05E-22 T 22-04-2016 IPR001478 PDZ domain GO:0005515 PP4_RS04985 8ed403ed0893cf795d7f4a5c2350ddb3 477 Gene3D G3DSA:2.40.10.10 166 274 3.9E-46 T 22-04-2016 PP4_RS04985 8ed403ed0893cf795d7f4a5c2350ddb3 477 Pfam PF13365 Trypsin-like peptidase domain 101 234 5.1E-36 T 22-04-2016 PP4_RS04985 8ed403ed0893cf795d7f4a5c2350ddb3 477 SMART SM00228 387 466 7.2E-10 T 22-04-2016 IPR001478 PDZ domain GO:0005515 PP4_RS04985 8ed403ed0893cf795d7f4a5c2350ddb3 477 SMART SM00228 273 355 1.3E-15 T 22-04-2016 IPR001478 PDZ domain GO:0005515 PP4_RS04985 8ed403ed0893cf795d7f4a5c2350ddb3 477 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 33 473 8.3E-165 T 22-04-2016 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 PP4_RS04985 8ed403ed0893cf795d7f4a5c2350ddb3 477 SUPERFAMILY SSF50156 388 475 1.45E-14 T 22-04-2016 IPR001478 PDZ domain GO:0005515 PP4_RS04985 8ed403ed0893cf795d7f4a5c2350ddb3 477 Gene3D G3DSA:2.30.42.10 388 477 4.0E-19 T 22-04-2016 IPR001478 PDZ domain GO:0005515 PP4_RS04985 8ed403ed0893cf795d7f4a5c2350ddb3 477 Gene3D G3DSA:2.30.42.10 275 371 1.2E-28 T 22-04-2016 IPR001478 PDZ domain GO:0005515 PP4_RS23425 04934345af20b56754c7d8d09402e15f 92 PANTHER PTHR33398 2 92 3.1E-36 T 22-04-2016 PP4_RS23425 04934345af20b56754c7d8d09402e15f 92 SUPERFAMILY SSF46992 3 86 1.28E-31 T 22-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS23425 04934345af20b56754c7d8d09402e15f 92 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 19 92 4.0E-35 T 22-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS23425 04934345af20b56754c7d8d09402e15f 92 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 17.243 T 22-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS23425 04934345af20b56754c7d8d09402e15f 92 Gene3D G3DSA:1.20.58.110 3 87 8.8E-31 T 22-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS23425 04934345af20b56754c7d8d09402e15f 92 TIGRFAM TIGR00029 S20: ribosomal protein bS20 2 85 9.4E-28 T 22-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS23425 04934345af20b56754c7d8d09402e15f 92 Pfam PF01649 Ribosomal protein S20 2 84 1.6E-28 T 22-04-2016 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS08490 d3bd52f4b61fbe465f76500b82da4afb 429 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 12 427 3.9E-134 T 22-04-2016 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PP4_RS08490 d3bd52f4b61fbe465f76500b82da4afb 429 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 17 80 9.6E-5 T 22-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PP4_RS08490 d3bd52f4b61fbe465f76500b82da4afb 429 SUPERFAMILY SSF52540 85 353 3.61E-86 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS08490 d3bd52f4b61fbe465f76500b82da4afb 429 SMART SM00382 151 332 1.1E-8 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS08490 d3bd52f4b61fbe465f76500b82da4afb 429 PANTHER PTHR15184 1 428 1.3E-164 T 22-04-2016 PP4_RS08490 d3bd52f4b61fbe465f76500b82da4afb 429 Gene3D G3DSA:3.40.50.300 117 396 9.6E-89 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS08490 d3bd52f4b61fbe465f76500b82da4afb 429 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 339 348 - T 22-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PP4_RS08490 d3bd52f4b61fbe465f76500b82da4afb 429 PANTHER PTHR15184:SF9 1 428 1.3E-164 T 22-04-2016 IPR032463 ATPase, type III secretion system, FliI GO:0016887|GO:0030257|GO:0044780 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PP4_RS08490 d3bd52f4b61fbe465f76500b82da4afb 429 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 139 348 1.6E-71 T 22-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PP4_RS25030 f237842eb7279923490a59350cdb302f 286 Pfam PF01256 Carbohydrate kinase 37 259 6.0E-59 T 22-04-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 PP4_RS25030 f237842eb7279923490a59350cdb302f 286 PANTHER PTHR12592:SF0 19 283 1.8E-68 T 22-04-2016 PP4_RS25030 f237842eb7279923490a59350cdb302f 286 SUPERFAMILY SSF53613 17 279 1.11E-71 T 22-04-2016 IPR029056 Ribokinase-like PP4_RS25030 f237842eb7279923490a59350cdb302f 286 Gene3D G3DSA:3.40.1190.20 20 280 9.9E-86 T 22-04-2016 IPR029056 Ribokinase-like PP4_RS25030 f237842eb7279923490a59350cdb302f 286 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 14 283 21.846 T 22-04-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 PP4_RS25030 f237842eb7279923490a59350cdb302f 286 PANTHER PTHR12592 19 283 1.8E-68 T 22-04-2016 PP4_RS25030 f237842eb7279923490a59350cdb302f 286 ProSitePatterns PS01050 YjeF C-terminal domain signature 2. 220 230 - T 22-04-2016 IPR017953 Carbohydrate kinase, predicted, conserved site PP4_RS25030 f237842eb7279923490a59350cdb302f 286 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 17 278 3.7E-64 T 22-04-2016 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 PP4_RS10365 bcc56ce441b616b8fffebc59783ca299 723 Gene3D G3DSA:3.20.20.360 332 585 1.2E-145 T 22-04-2016 PP4_RS10365 bcc56ce441b616b8fffebc59783ca299 723 Gene3D G3DSA:3.20.20.360 262 292 1.2E-145 T 22-04-2016 PP4_RS10365 bcc56ce441b616b8fffebc59783ca299 723 Gene3D G3DSA:3.20.20.360 85 131 1.2E-145 T 22-04-2016 PP4_RS10365 bcc56ce441b616b8fffebc59783ca299 723 PANTHER PTHR21631:SF7 27 37 1.7E-139 T 22-04-2016 PP4_RS10365 bcc56ce441b616b8fffebc59783ca299 723 PANTHER PTHR21631:SF7 494 720 1.7E-139 T 22-04-2016 PP4_RS10365 bcc56ce441b616b8fffebc59783ca299 723 Gene3D G3DSA:1.20.1220.12 588 720 1.4E-73 T 22-04-2016 PP4_RS10365 bcc56ce441b616b8fffebc59783ca299 723 Gene3D G3DSA:1.10.1860.10 3 84 3.9E-35 T 22-04-2016 PP4_RS10365 bcc56ce441b616b8fffebc59783ca299 723 PANTHER PTHR21631 27 37 1.7E-139 T 22-04-2016 PP4_RS10365 bcc56ce441b616b8fffebc59783ca299 723 PANTHER PTHR21631 494 720 1.7E-139 T 22-04-2016 PP4_RS10365 bcc56ce441b616b8fffebc59783ca299 723 Gene3D G3DSA:2.170.170.11 294 331 3.7E-64 T 22-04-2016 IPR023310 Malate synthase G, beta sub-domain GO:0004474 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 PP4_RS10365 bcc56ce441b616b8fffebc59783ca299 723 Gene3D G3DSA:2.170.170.11 132 260 3.7E-64 T 22-04-2016 IPR023310 Malate synthase G, beta sub-domain GO:0004474 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 PP4_RS10365 bcc56ce441b616b8fffebc59783ca299 723 Pfam PF01274 Malate synthase 14 694 1.5E-178 T 22-04-2016 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 PP4_RS10365 bcc56ce441b616b8fffebc59783ca299 723 SUPERFAMILY SSF51645 4 719 1.2E-293 T 22-04-2016 IPR011076 Malate synthase-like GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 PP4_RS10365 bcc56ce441b616b8fffebc59783ca299 723 TIGRFAM TIGR01345 malate_syn_G: malate synthase G 4 720 0.0 T 22-04-2016 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 PP4_RS10365 bcc56ce441b616b8fffebc59783ca299 723 Hamap MF_00641 Malate synthase G [glcB]. 1 723 389.195 T 22-04-2016 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 PP4_RS22540 afaa8e602638d151456de2c4d369516f 299 SMART SM00448 170 287 4.9E-18 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS22540 afaa8e602638d151456de2c4d369516f 299 PIRSF PIRSF002867 1 294 1.1E-87 T 22-04-2016 IPR024181 Chemotaxis response regulator CheV PP4_RS22540 afaa8e602638d151456de2c4d369516f 299 Gene3D G3DSA:2.30.30.40 91 135 2.3E-5 T 22-04-2016 PP4_RS22540 afaa8e602638d151456de2c4d369516f 299 SUPERFAMILY SSF50341 9 147 1.96E-31 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS22540 afaa8e602638d151456de2c4d369516f 299 SUPERFAMILY SSF52172 171 292 2.42E-23 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS22540 afaa8e602638d151456de2c4d369516f 299 SMART SM00260 10 144 1.3E-23 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS22540 afaa8e602638d151456de2c4d369516f 299 PANTHER PTHR22617:SF37 11 160 1.8E-43 T 22-04-2016 PP4_RS22540 afaa8e602638d151456de2c4d369516f 299 Pfam PF00072 Response regulator receiver domain 172 281 1.2E-16 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS22540 afaa8e602638d151456de2c4d369516f 299 Pfam PF01584 CheW-like domain 13 146 8.6E-33 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS22540 afaa8e602638d151456de2c4d369516f 299 Gene3D G3DSA:2.40.50.180 51 90 2.2E-4 T 22-04-2016 PP4_RS22540 afaa8e602638d151456de2c4d369516f 299 Gene3D G3DSA:3.40.50.2300 170 288 4.0E-24 T 22-04-2016 PP4_RS22540 afaa8e602638d151456de2c4d369516f 299 PANTHER PTHR22617 11 160 1.8E-43 T 22-04-2016 PP4_RS14270 627dcdf5ac9eb4e0d1e94bee8cbb3c7c 197 SUPERFAMILY SSF53955 61 189 6.48E-49 T 22-04-2016 IPR023346 Lysozyme-like domain PP4_RS14270 627dcdf5ac9eb4e0d1e94bee8cbb3c7c 197 Pfam PF01464 Transglycosylase SLT domain 71 166 1.4E-28 T 22-04-2016 IPR008258 Transglycosylase SLT domain 1 PP4_RS14270 627dcdf5ac9eb4e0d1e94bee8cbb3c7c 197 Pfam PF13511 Domain of unknown function (DUF4124) 8 58 3.7E-5 T 22-04-2016 IPR025392 Domain of unknown function DUF4124 PP4_RS14270 627dcdf5ac9eb4e0d1e94bee8cbb3c7c 197 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 87 115 - T 22-04-2016 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 PP4_RS14270 627dcdf5ac9eb4e0d1e94bee8cbb3c7c 197 Gene3D G3DSA:1.10.530.10 64 193 2.4E-48 T 22-04-2016 PP4_RS14270 627dcdf5ac9eb4e0d1e94bee8cbb3c7c 197 PANTHER PTHR21666 49 187 1.8E-39 T 22-04-2016 PP4_RS15795 b10ab59ad1f2747b787dd985f45421aa 304 PANTHER PTHR30126:SF16 7 303 2.0E-91 T 22-04-2016 PP4_RS15795 b10ab59ad1f2747b787dd985f45421aa 304 SUPERFAMILY SSF46785 8 85 6.8E-16 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS15795 b10ab59ad1f2747b787dd985f45421aa 304 Pfam PF03466 LysR substrate binding domain 93 294 3.2E-25 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS15795 b10ab59ad1f2747b787dd985f45421aa 304 SUPERFAMILY SSF53850 95 301 5.97E-25 T 22-04-2016 PP4_RS15795 b10ab59ad1f2747b787dd985f45421aa 304 PANTHER PTHR30126 7 303 2.0E-91 T 22-04-2016 PP4_RS15795 b10ab59ad1f2747b787dd985f45421aa 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 67 7.0E-15 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS15795 b10ab59ad1f2747b787dd985f45421aa 304 Gene3D G3DSA:3.40.190.10 93 206 4.4E-15 T 22-04-2016 PP4_RS15795 b10ab59ad1f2747b787dd985f45421aa 304 Gene3D G3DSA:1.10.10.10 6 84 1.2E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS18885 4966d86991eb0d8b35b78c6ce099c2c6 404 Gene3D G3DSA:3.40.190.10 147 245 5.5E-9 T 22-04-2016 PP4_RS18885 4966d86991eb0d8b35b78c6ce099c2c6 404 PANTHER PTHR30024:SF7 10 393 4.6E-153 T 22-04-2016 PP4_RS18885 4966d86991eb0d8b35b78c6ce099c2c6 404 PANTHER PTHR30024 10 393 4.6E-153 T 22-04-2016 PP4_RS18885 4966d86991eb0d8b35b78c6ce099c2c6 404 SUPERFAMILY SSF53850 21 259 1.73E-31 T 22-04-2016 PP4_RS18885 4966d86991eb0d8b35b78c6ce099c2c6 404 Pfam PF13379 NMT1-like family 17 268 3.5E-95 T 22-04-2016 PP4_RS27250 1063c46bd74bbfc9187c4baff144e2ca 288 Pfam PF01418 Helix-turn-helix domain, rpiR family 2 76 7.6E-22 T 22-04-2016 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 PP4_RS27250 1063c46bd74bbfc9187c4baff144e2ca 288 SUPERFAMILY SSF53697 85 279 8.53E-37 T 22-04-2016 PP4_RS27250 1063c46bd74bbfc9187c4baff144e2ca 288 PANTHER PTHR30514:SF1 1 278 6.2E-93 T 22-04-2016 PP4_RS27250 1063c46bd74bbfc9187c4baff144e2ca 288 Gene3D G3DSA:3.40.50.10490 97 262 3.9E-32 T 22-04-2016 PP4_RS27250 1063c46bd74bbfc9187c4baff144e2ca 288 Gene3D G3DSA:1.10.10.10 2 77 6.1E-27 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS27250 1063c46bd74bbfc9187c4baff144e2ca 288 Pfam PF01380 SIS domain 125 252 1.9E-16 T 22-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 PP4_RS27250 1063c46bd74bbfc9187c4baff144e2ca 288 PANTHER PTHR30514 1 278 6.2E-93 T 22-04-2016 PP4_RS27250 1063c46bd74bbfc9187c4baff144e2ca 288 SUPERFAMILY SSF46689 2 76 7.88E-18 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS22885 6b792dc344910ebd675a5b1b783e7486 360 SUPERFAMILY SSF75620 12 355 9.81E-136 T 22-04-2016 PP4_RS22885 6b792dc344910ebd675a5b1b783e7486 360 Gene3D G3DSA:1.20.58.410 8 95 1.4E-18 T 22-04-2016 PP4_RS22885 6b792dc344910ebd675a5b1b783e7486 360 SMART SM00937 65 180 9.4E-68 T 22-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 PP4_RS22885 6b792dc344910ebd675a5b1b783e7486 360 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 230 246 - T 22-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 PP4_RS22885 6b792dc344910ebd675a5b1b783e7486 360 Gene3D G3DSA:3.30.160.20 213 289 3.2E-36 T 22-04-2016 IPR014720 Double-stranded RNA-binding domain PP4_RS22885 6b792dc344910ebd675a5b1b783e7486 360 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 5 359 41.011 T 22-04-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 PP4_RS22885 6b792dc344910ebd675a5b1b783e7486 360 PANTHER PTHR11075 1 358 4.4E-180 T 22-04-2016 PP4_RS22885 6b792dc344910ebd675a5b1b783e7486 360 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 1 358 1.4E-168 T 22-04-2016 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 PP4_RS22885 6b792dc344910ebd675a5b1b783e7486 360 Pfam PF03462 PCRF domain 12 205 2.0E-73 T 22-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 PP4_RS22885 6b792dc344910ebd675a5b1b783e7486 360 PANTHER PTHR11075:SF9 1 358 4.4E-180 T 22-04-2016 PP4_RS22885 6b792dc344910ebd675a5b1b783e7486 360 Pfam PF00472 RF-1 domain 215 323 2.2E-42 T 22-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 PP4_RS12830 ea119d59a893b326b15346b322295408 342 Gene3D G3DSA:3.40.190.10 31 120 1.9E-43 T 22-04-2016 PP4_RS12830 ea119d59a893b326b15346b322295408 342 Gene3D G3DSA:3.40.190.10 271 336 1.9E-43 T 22-04-2016 PP4_RS12830 ea119d59a893b326b15346b322295408 342 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 39 320 3.2E-57 T 22-04-2016 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 PP4_RS12830 ea119d59a893b326b15346b322295408 342 Gene3D G3DSA:3.40.190.100 122 270 8.0E-52 T 22-04-2016 PP4_RS12830 ea119d59a893b326b15346b322295408 342 SUPERFAMILY SSF53850 33 332 1.37E-88 T 22-04-2016 PP4_RS18075 db48c35545435e379c400448f8de97c5 162 PANTHER PTHR34584 3 162 1.5E-22 T 22-04-2016 PP4_RS18075 db48c35545435e379c400448f8de97c5 162 PANTHER PTHR34584:SF1 3 162 1.5E-22 T 22-04-2016 PP4_RS18075 db48c35545435e379c400448f8de97c5 162 Pfam PF01899 Na+/H+ ion antiporter subunit 12 160 6.7E-35 T 22-04-2016 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 PP4_RS18075 db48c35545435e379c400448f8de97c5 162 PIRSF PIRSF019239 1 162 3.1E-32 T 22-04-2016 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 PP4_RS12910 9ad15f0d2f9043dc935a6e97fd89872a 336 SUPERFAMILY SSF51430 1 313 2.88E-94 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain PP4_RS12910 9ad15f0d2f9043dc935a6e97fd89872a 336 PRINTS PR00069 Aldo-keto reductase signature 39 63 9.7E-6 T 22-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PP4_RS12910 9ad15f0d2f9043dc935a6e97fd89872a 336 PRINTS PR00069 Aldo-keto reductase signature 104 122 9.7E-6 T 22-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PP4_RS12910 9ad15f0d2f9043dc935a6e97fd89872a 336 PRINTS PR00069 Aldo-keto reductase signature 135 152 9.7E-6 T 22-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PP4_RS12910 9ad15f0d2f9043dc935a6e97fd89872a 336 PANTHER PTHR11732:SF273 1 335 2.3E-129 T 22-04-2016 PP4_RS12910 9ad15f0d2f9043dc935a6e97fd89872a 336 Gene3D G3DSA:3.20.20.100 9 317 1.6E-93 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain PP4_RS12910 9ad15f0d2f9043dc935a6e97fd89872a 336 Pfam PF00248 Aldo/keto reductase family 16 311 5.6E-66 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain PP4_RS12910 9ad15f0d2f9043dc935a6e97fd89872a 336 PANTHER PTHR11732 1 335 2.3E-129 T 22-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta PP4_RS22995 89e2bb9e3dd30736f339c864a4b17bea 803 SUPERFAMILY SSF50182 627 692 1.34E-15 T 22-04-2016 IPR010920 LSM domain PP4_RS22995 89e2bb9e3dd30736f339c864a4b17bea 803 Gene3D G3DSA:2.30.30.60 642 691 1.7E-16 T 22-04-2016 PP4_RS22995 89e2bb9e3dd30736f339c864a4b17bea 803 PANTHER PTHR30347:SF3 46 795 2.8E-199 T 22-04-2016 PP4_RS22995 89e2bb9e3dd30736f339c864a4b17bea 803 SUPERFAMILY SSF82689 701 793 1.06E-12 T 22-04-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 PP4_RS22995 89e2bb9e3dd30736f339c864a4b17bea 803 Gene3D G3DSA:3.30.70.100 703 781 1.7E-8 T 22-04-2016 PP4_RS22995 89e2bb9e3dd30736f339c864a4b17bea 803 Pfam PF12607 Protein of unknown function (DUF3772) 140 199 6.2E-20 T 22-04-2016 IPR022249 Domain of unknown function DUF3772 PP4_RS22995 89e2bb9e3dd30736f339c864a4b17bea 803 PANTHER PTHR30347 46 795 2.8E-199 T 22-04-2016 PP4_RS22995 89e2bb9e3dd30736f339c864a4b17bea 803 Pfam PF00924 Mechanosensitive ion channel 585 782 5.7E-40 T 22-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 PP4_RS22995 89e2bb9e3dd30736f339c864a4b17bea 803 SUPERFAMILY SSF82861 541 625 1.7E-13 T 22-04-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 PP4_RS18500 aa69fa08266b693e38dbac59d1614bf7 289 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 65 108 - T 22-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PP4_RS18500 aa69fa08266b693e38dbac59d1614bf7 289 Gene3D G3DSA:1.10.10.60 9 64 6.8E-17 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS18500 aa69fa08266b693e38dbac59d1614bf7 289 SUPERFAMILY SSF55136 135 289 3.49E-37 T 22-04-2016 IPR011256 Regulatory factor, effector binding domain PP4_RS18500 aa69fa08266b693e38dbac59d1614bf7 289 Gene3D G3DSA:1.10.10.60 65 121 3.6E-15 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS18500 aa69fa08266b693e38dbac59d1614bf7 289 PANTHER PTHR40055:SF1 33 289 5.5E-42 T 22-04-2016 PP4_RS18500 aa69fa08266b693e38dbac59d1614bf7 289 SMART SM00342 28 112 7.8E-22 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS18500 aa69fa08266b693e38dbac59d1614bf7 289 Pfam PF06445 GyrI-like small molecule binding domain 135 289 1.8E-37 T 22-04-2016 IPR029442 GyrI-like small molecule binding domain PP4_RS18500 aa69fa08266b693e38dbac59d1614bf7 289 SUPERFAMILY SSF46689 65 117 3.81E-9 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS18500 aa69fa08266b693e38dbac59d1614bf7 289 Pfam PF12833 Helix-turn-helix domain 34 113 6.0E-20 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS18500 aa69fa08266b693e38dbac59d1614bf7 289 SUPERFAMILY SSF46689 12 62 2.33E-9 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS18500 aa69fa08266b693e38dbac59d1614bf7 289 SMART SM00871 135 289 4.3E-44 T 22-04-2016 IPR010499 Bacterial transcription activator, effector binding PP4_RS18500 aa69fa08266b693e38dbac59d1614bf7 289 PANTHER PTHR40055 33 289 5.5E-42 T 22-04-2016 PP4_RS18500 aa69fa08266b693e38dbac59d1614bf7 289 Gene3D G3DSA:3.20.80.10 135 289 9.9E-47 T 22-04-2016 IPR011256 Regulatory factor, effector binding domain PP4_RS01690 15ac9208519a6deb55527f4db5e55b2a 314 PANTHER PTHR30177:SF6 24 289 5.4E-111 T 22-04-2016 PP4_RS01690 15ac9208519a6deb55527f4db5e55b2a 314 Gene3D G3DSA:3.40.190.100 118 238 5.8E-22 T 22-04-2016 PP4_RS01690 15ac9208519a6deb55527f4db5e55b2a 314 SUPERFAMILY SSF53850 25 301 2.71E-74 T 22-04-2016 PP4_RS01690 15ac9208519a6deb55527f4db5e55b2a 314 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 31 284 5.7E-54 T 22-04-2016 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 PP4_RS01690 15ac9208519a6deb55527f4db5e55b2a 314 PANTHER PTHR30177 24 289 5.4E-111 T 22-04-2016 PP4_RS01690 15ac9208519a6deb55527f4db5e55b2a 314 Gene3D G3DSA:3.40.190.10 239 301 2.7E-27 T 22-04-2016 PP4_RS01690 15ac9208519a6deb55527f4db5e55b2a 314 Gene3D G3DSA:3.40.190.10 25 113 2.7E-27 T 22-04-2016 PP4_RS01690 15ac9208519a6deb55527f4db5e55b2a 314 TIGRFAM TIGR03414 ABC_choline_bnd: choline ABC transporter, periplasmic binding protein 23 310 9.8E-128 T 22-04-2016 IPR017783 ABC transporter, choline, substrate-binding protein GO:0015871|GO:0033265|GO:0042597 PP4_RS22135 8766cfccee3ec0fbfcb08fa3475a02d1 468 PANTHER PTHR13847:SF199 5 461 1.4E-159 T 22-04-2016 PP4_RS22135 8766cfccee3ec0fbfcb08fa3475a02d1 468 PANTHER PTHR13847 5 461 1.4E-159 T 22-04-2016 PP4_RS22135 8766cfccee3ec0fbfcb08fa3475a02d1 468 Pfam PF01266 FAD dependent oxidoreductase 31 392 1.6E-49 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PP4_RS22135 8766cfccee3ec0fbfcb08fa3475a02d1 468 Gene3D G3DSA:3.50.50.60 355 401 2.7E-34 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS22135 8766cfccee3ec0fbfcb08fa3475a02d1 468 Gene3D G3DSA:3.50.50.60 178 254 2.7E-34 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS22135 8766cfccee3ec0fbfcb08fa3475a02d1 468 Gene3D G3DSA:3.50.50.60 22 121 2.7E-34 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS22135 8766cfccee3ec0fbfcb08fa3475a02d1 468 SUPERFAMILY SSF51905 182 307 8.74E-39 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS22135 8766cfccee3ec0fbfcb08fa3475a02d1 468 SUPERFAMILY SSF51905 6 124 8.74E-39 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS02445 7a60f1cc9de5b6f9a22b37ee8eeb6d73 177 Gene3D G3DSA:2.30.30.30 116 177 4.4E-31 T 22-04-2016 IPR014722 Ribosomal protein L2 domain 2 PP4_RS02445 7a60f1cc9de5b6f9a22b37ee8eeb6d73 177 ProSitePatterns PS01014 Transcription termination factor nusG signature. 160 169 - T 22-04-2016 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site PP4_RS02445 7a60f1cc9de5b6f9a22b37ee8eeb6d73 177 SMART SM00738 2 111 5.2E-48 T 22-04-2016 IPR006645 NusG, N-terminal GO:0006355 PP4_RS02445 7a60f1cc9de5b6f9a22b37ee8eeb6d73 177 Pfam PF02357 Transcription termination factor nusG 3 108 2.8E-28 T 22-04-2016 IPR006645 NusG, N-terminal GO:0006355 PP4_RS02445 7a60f1cc9de5b6f9a22b37ee8eeb6d73 177 Pfam PF00467 KOW motif 126 159 8.1E-8 T 22-04-2016 IPR005824 KOW PP4_RS02445 7a60f1cc9de5b6f9a22b37ee8eeb6d73 177 PANTHER PTHR30265 1 177 1.3E-82 T 22-04-2016 PP4_RS02445 7a60f1cc9de5b6f9a22b37ee8eeb6d73 177 Gene3D G3DSA:3.30.70.940 3 113 5.7E-44 T 22-04-2016 IPR006645 NusG, N-terminal GO:0006355 PP4_RS02445 7a60f1cc9de5b6f9a22b37ee8eeb6d73 177 SUPERFAMILY SSF82679 3 114 3.66E-39 T 22-04-2016 IPR006645 NusG, N-terminal GO:0006355 PP4_RS02445 7a60f1cc9de5b6f9a22b37ee8eeb6d73 177 SMART SM00739 123 150 1.1E-6 T 22-04-2016 IPR005824 KOW PP4_RS02445 7a60f1cc9de5b6f9a22b37ee8eeb6d73 177 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 2 177 25.072 T 22-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 PP4_RS02445 7a60f1cc9de5b6f9a22b37ee8eeb6d73 177 PRINTS PR00338 Transcription termination factor NUSG signature 153 169 5.8E-20 T 22-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 PP4_RS02445 7a60f1cc9de5b6f9a22b37ee8eeb6d73 177 PRINTS PR00338 Transcription termination factor NUSG signature 57 69 5.8E-20 T 22-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 PP4_RS02445 7a60f1cc9de5b6f9a22b37ee8eeb6d73 177 PRINTS PR00338 Transcription termination factor NUSG signature 135 150 5.8E-20 T 22-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 PP4_RS02445 7a60f1cc9de5b6f9a22b37ee8eeb6d73 177 SUPERFAMILY SSF50104 121 177 3.01E-19 T 22-04-2016 IPR008991 Translation protein SH3-like domain PP4_RS02445 7a60f1cc9de5b6f9a22b37ee8eeb6d73 177 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 5 177 7.1E-68 T 22-04-2016 IPR001062 Transcription antitermination protein, NusG GO:0032784 PP4_RS11965 fc05dd87f913f732257916dc0d79ce04 553 TIGRFAM TIGR01110 mdcA: malonate decarboxylase, alpha subunit 11 553 0.0 T 22-04-2016 IPR005777 Acetyl-S-ACP:malonate ACP transferase MetaCyc: PWY-5794|MetaCyc: PWY-6060 PP4_RS11965 fc05dd87f913f732257916dc0d79ce04 553 Gene3D G3DSA:3.40.1080.10 40 234 1.4E-7 T 22-04-2016 PP4_RS11965 fc05dd87f913f732257916dc0d79ce04 553 SUPERFAMILY SSF100950 230 492 2.51E-20 T 22-04-2016 PP4_RS11965 fc05dd87f913f732257916dc0d79ce04 553 PANTHER PTHR13707 83 275 4.6E-93 T 22-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 PP4_RS11965 fc05dd87f913f732257916dc0d79ce04 553 PANTHER PTHR13707:SF27 83 275 4.6E-93 T 22-04-2016 PP4_RS11965 fc05dd87f913f732257916dc0d79ce04 553 SUPERFAMILY SSF100950 40 282 9.77E-33 T 22-04-2016 PP4_RS11965 fc05dd87f913f732257916dc0d79ce04 553 Pfam PF16957 Malonate decarboxylase, alpha subunit, transporter 10 553 2.1E-295 T 22-04-2016 IPR005777 Acetyl-S-ACP:malonate ACP transferase MetaCyc: PWY-5794|MetaCyc: PWY-6060 PP4_RS03995 ba586d6af425c3ac98461a6dc5bad38a 148 PANTHER PTHR31964 1 145 1.6E-15 T 22-04-2016 PP4_RS03995 ba586d6af425c3ac98461a6dc5bad38a 148 PANTHER PTHR31964:SF42 1 145 1.6E-15 T 22-04-2016 PP4_RS03995 ba586d6af425c3ac98461a6dc5bad38a 148 PRINTS PR01438 Universal stress protein signature 125 147 3.8E-6 T 22-04-2016 IPR006015 Universal stress protein A PP4_RS03995 ba586d6af425c3ac98461a6dc5bad38a 148 PRINTS PR01438 Universal stress protein signature 2 20 3.8E-6 T 22-04-2016 IPR006015 Universal stress protein A PP4_RS03995 ba586d6af425c3ac98461a6dc5bad38a 148 PRINTS PR01438 Universal stress protein signature 107 119 3.8E-6 T 22-04-2016 IPR006015 Universal stress protein A PP4_RS03995 ba586d6af425c3ac98461a6dc5bad38a 148 Pfam PF00582 Universal stress protein family 4 145 6.1E-17 T 22-04-2016 IPR006016 UspA GO:0006950 PP4_RS03995 ba586d6af425c3ac98461a6dc5bad38a 148 SUPERFAMILY SSF52402 4 145 5.94E-24 T 22-04-2016 PP4_RS03995 ba586d6af425c3ac98461a6dc5bad38a 148 Gene3D G3DSA:3.40.50.620 1 145 3.5E-27 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS21640 05a5ef8c7a5ccfaf66b1fb33c730ee98 284 Gene3D G3DSA:2.70.98.10 13 278 3.6E-64 T 22-04-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 PP4_RS21640 05a5ef8c7a5ccfaf66b1fb33c730ee98 284 PANTHER PTHR11122:SF14 1 279 3.0E-60 T 22-04-2016 PP4_RS21640 05a5ef8c7a5ccfaf66b1fb33c730ee98 284 Pfam PF01263 Aldose 1-epimerase 30 277 4.4E-25 T 22-04-2016 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 PP4_RS21640 05a5ef8c7a5ccfaf66b1fb33c730ee98 284 PIRSF PIRSF016020 3 282 3.1E-51 T 22-04-2016 IPR025532 Glucose-6-phosphate 1-epimerase KEGG: 00010+5.1.3.15 PP4_RS21640 05a5ef8c7a5ccfaf66b1fb33c730ee98 284 SUPERFAMILY SSF74650 15 277 1.02E-61 T 22-04-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 PP4_RS21640 05a5ef8c7a5ccfaf66b1fb33c730ee98 284 PANTHER PTHR11122 1 279 3.0E-60 T 22-04-2016 PP4_RS20495 b055179e5ac22fad3103d61f61812ad8 256 SUPERFAMILY SSF55920 5 253 5.1E-86 T 22-04-2016 IPR000994 Peptidase M24, structural domain PP4_RS20495 b055179e5ac22fad3103d61f61812ad8 256 PANTHER PTHR10804 4 256 2.9E-104 T 22-04-2016 PP4_RS20495 b055179e5ac22fad3103d61f61812ad8 256 Hamap MF_01974 Methionine aminopeptidase [map]. 4 252 38.123 T 22-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 PP4_RS20495 b055179e5ac22fad3103d61f61812ad8 256 PRINTS PR00599 Methionine aminopeptidase-1 signature 194 206 3.4E-18 T 22-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase PP4_RS20495 b055179e5ac22fad3103d61f61812ad8 256 PRINTS PR00599 Methionine aminopeptidase-1 signature 70 83 3.4E-18 T 22-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase PP4_RS20495 b055179e5ac22fad3103d61f61812ad8 256 PRINTS PR00599 Methionine aminopeptidase-1 signature 93 109 3.4E-18 T 22-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase PP4_RS20495 b055179e5ac22fad3103d61f61812ad8 256 PRINTS PR00599 Methionine aminopeptidase-1 signature 163 175 3.4E-18 T 22-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase PP4_RS20495 b055179e5ac22fad3103d61f61812ad8 256 Pfam PF00557 Metallopeptidase family M24 14 243 1.2E-52 T 22-04-2016 IPR000994 Peptidase M24, structural domain PP4_RS20495 b055179e5ac22fad3103d61f61812ad8 256 Gene3D G3DSA:3.90.230.10 6 254 1.5E-89 T 22-04-2016 IPR000994 Peptidase M24, structural domain PP4_RS20495 b055179e5ac22fad3103d61f61812ad8 256 PANTHER PTHR10804:SF75 4 256 2.9E-104 T 22-04-2016 PP4_RS20495 b055179e5ac22fad3103d61f61812ad8 256 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 5 251 7.0E-88 T 22-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 PP4_RS14685 7c26b3e3b4b955c5e476dd5de032d52e 463 PANTHER PTHR24423 178 449 8.8E-57 T 22-04-2016 PP4_RS14685 7c26b3e3b4b955c5e476dd5de032d52e 463 SMART SM00304 184 237 1.4E-8 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS14685 7c26b3e3b4b955c5e476dd5de032d52e 463 SMART SM00388 238 304 0.0045 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS14685 7c26b3e3b4b955c5e476dd5de032d52e 463 Pfam PF00672 HAMP domain 165 234 1.4E-10 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS14685 7c26b3e3b4b955c5e476dd5de032d52e 463 Gene3D G3DSA:1.10.287.130 228 299 3.9E-9 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS14685 7c26b3e3b4b955c5e476dd5de032d52e 463 SUPERFAMILY SSF55874 294 458 1.7E-35 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS14685 7c26b3e3b4b955c5e476dd5de032d52e 463 SMART SM00387 350 460 5.1E-31 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS14685 7c26b3e3b4b955c5e476dd5de032d52e 463 Gene3D G3DSA:3.30.565.10 312 459 2.9E-34 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS14685 7c26b3e3b4b955c5e476dd5de032d52e 463 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 350 458 9.5E-19 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS14685 7c26b3e3b4b955c5e476dd5de032d52e 463 PRINTS PR00344 Bacterial sensor protein C-terminal signature 420 438 3.4E-8 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS14685 7c26b3e3b4b955c5e476dd5de032d52e 463 PRINTS PR00344 Bacterial sensor protein C-terminal signature 387 401 3.4E-8 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS14685 7c26b3e3b4b955c5e476dd5de032d52e 463 PRINTS PR00344 Bacterial sensor protein C-terminal signature 405 415 3.4E-8 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS14685 7c26b3e3b4b955c5e476dd5de032d52e 463 SUPERFAMILY SSF47384 221 303 2.35E-12 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS14685 7c26b3e3b4b955c5e476dd5de032d52e 463 SUPERFAMILY SSF158472 185 235 7.06E-7 T 22-04-2016 PP4_RS10350 84ddc3b49c0ee8a6aa2eec8308cef6d3 398 PANTHER PTHR23523 7 389 1.5E-174 T 22-04-2016 PP4_RS10350 84ddc3b49c0ee8a6aa2eec8308cef6d3 398 Gene3D G3DSA:1.20.1250.20 200 379 7.6E-12 T 22-04-2016 PP4_RS10350 84ddc3b49c0ee8a6aa2eec8308cef6d3 398 Pfam PF07690 Major Facilitator Superfamily 23 338 3.0E-24 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS10350 84ddc3b49c0ee8a6aa2eec8308cef6d3 398 SUPERFAMILY SSF103473 5 380 1.02E-41 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS10350 84ddc3b49c0ee8a6aa2eec8308cef6d3 398 Gene3D G3DSA:1.20.1250.20 7 183 3.2E-15 T 22-04-2016 PP4_RS10350 84ddc3b49c0ee8a6aa2eec8308cef6d3 398 PANTHER PTHR23523:SF1 7 389 1.5E-174 T 22-04-2016 PP4_RS13125 9a2913228c32d580b894a74f5b7f3d1d 684 Gene3D G3DSA:3.40.605.10 6 267 2.2E-33 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS13125 9a2913228c32d580b894a74f5b7f3d1d 684 Gene3D G3DSA:3.10.129.10 527 683 1.1E-45 T 22-04-2016 IPR029069 HotDog domain PP4_RS13125 9a2913228c32d580b894a74f5b7f3d1d 684 PANTHER PTHR11699 1 446 9.3E-139 T 22-04-2016 PP4_RS13125 9a2913228c32d580b894a74f5b7f3d1d 684 SUPERFAMILY SSF54637 532 682 2.83E-37 T 22-04-2016 IPR029069 HotDog domain PP4_RS13125 9a2913228c32d580b894a74f5b7f3d1d 684 Pfam PF00171 Aldehyde dehydrogenase family 34 447 3.0E-55 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PP4_RS13125 9a2913228c32d580b894a74f5b7f3d1d 684 SUPERFAMILY SSF53720 6 507 1.57E-74 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS13125 9a2913228c32d580b894a74f5b7f3d1d 684 TIGRFAM TIGR02278 PaaN-DH: phenylacetic acid degradation protein paaN 7 680 4.1E-295 T 22-04-2016 IPR011966 Phenylacetic acid degradation protein PaaN PP4_RS13125 9a2913228c32d580b894a74f5b7f3d1d 684 PANTHER PTHR11699:SF12 1 446 9.3E-139 T 22-04-2016 IPR011966 Phenylacetic acid degradation protein PaaN PP4_RS13125 9a2913228c32d580b894a74f5b7f3d1d 684 Gene3D G3DSA:3.40.309.10 268 458 1.4E-37 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PP4_RS13125 9a2913228c32d580b894a74f5b7f3d1d 684 Pfam PF01575 MaoC like domain 542 645 6.5E-30 T 22-04-2016 IPR002539 MaoC-like domain PP4_RS17930 9f945ebe2c72af4e6d24b834e86f812c 392 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 123 6.1E-17 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS17930 9f945ebe2c72af4e6d24b834e86f812c 392 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 234 382 5.4E-43 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS17930 9f945ebe2c72af4e6d24b834e86f812c 392 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 128 206 2.8E-18 T 22-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 PP4_RS17930 9f945ebe2c72af4e6d24b834e86f812c 392 Gene3D G3DSA:2.40.110.10 127 224 3.1E-32 T 22-04-2016 PP4_RS17930 9f945ebe2c72af4e6d24b834e86f812c 392 PANTHER PTHR10909 3 385 1.4E-110 T 22-04-2016 PP4_RS17930 9f945ebe2c72af4e6d24b834e86f812c 392 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 341 360 - T 22-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 PP4_RS17930 9f945ebe2c72af4e6d24b834e86f812c 392 Gene3D G3DSA:1.20.140.10 225 385 1.3E-55 T 22-04-2016 PP4_RS17930 9f945ebe2c72af4e6d24b834e86f812c 392 Gene3D G3DSA:1.10.540.10 1 126 8.3E-26 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS17930 9f945ebe2c72af4e6d24b834e86f812c 392 SUPERFAMILY SSF47203 232 385 1.32E-52 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS17930 9f945ebe2c72af4e6d24b834e86f812c 392 SUPERFAMILY SSF56645 2 245 2.49E-60 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 PP4_RS16050 1181c36796f9574bf7a324cb275d6cb4 380 Gene3D G3DSA:1.20.1090.10 186 380 2.8E-52 T 22-04-2016 PP4_RS16050 1181c36796f9574bf7a324cb275d6cb4 380 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 174 202 - T 22-04-2016 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 PP4_RS16050 1181c36796f9574bf7a324cb275d6cb4 380 SUPERFAMILY SSF56796 4 378 1.7E-108 T 22-04-2016 PP4_RS16050 1181c36796f9574bf7a324cb275d6cb4 380 PANTHER PTHR11496 5 380 6.6E-94 T 22-04-2016 PP4_RS16050 1181c36796f9574bf7a324cb275d6cb4 380 Pfam PF00465 Iron-containing alcohol dehydrogenase 8 371 1.2E-102 T 22-04-2016 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 PP4_RS16050 1181c36796f9574bf7a324cb275d6cb4 380 PANTHER PTHR11496:SF75 5 380 6.6E-94 T 22-04-2016 PP4_RS16050 1181c36796f9574bf7a324cb275d6cb4 380 Gene3D G3DSA:3.40.50.1970 6 185 9.4E-51 T 22-04-2016 PP4_RS14255 4d22b5aeec8d817b89bed164bfaddf28 475 Pfam PF00072 Response regulator receiver domain 5 112 1.5E-25 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS14255 4d22b5aeec8d817b89bed164bfaddf28 475 SUPERFAMILY SSF52540 144 393 3.39E-64 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS14255 4d22b5aeec8d817b89bed164bfaddf28 475 Gene3D G3DSA:1.10.10.60 417 467 2.0E-13 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS14255 4d22b5aeec8d817b89bed164bfaddf28 475 Pfam PF02954 Bacterial regulatory protein, Fis family 424 465 6.2E-11 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS14255 4d22b5aeec8d817b89bed164bfaddf28 475 SUPERFAMILY SSF46689 364 467 3.67E-12 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS14255 4d22b5aeec8d817b89bed164bfaddf28 475 Gene3D G3DSA:3.40.50.2300 2 127 2.0E-33 T 22-04-2016 PP4_RS14255 4d22b5aeec8d817b89bed164bfaddf28 475 Pfam PF00158 Sigma-54 interaction domain 154 317 1.4E-63 T 22-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 PP4_RS14255 4d22b5aeec8d817b89bed164bfaddf28 475 SMART SM00382 171 321 1.2E-5 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS14255 4d22b5aeec8d817b89bed164bfaddf28 475 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 364 373 - T 22-04-2016 IPR025944 Sigma-54 interaction domain, conserved site PP4_RS14255 4d22b5aeec8d817b89bed164bfaddf28 475 Gene3D G3DSA:3.40.50.300 141 322 3.7E-48 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS14255 4d22b5aeec8d817b89bed164bfaddf28 475 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 175 188 - T 22-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 PP4_RS14255 4d22b5aeec8d817b89bed164bfaddf28 475 SMART SM00448 3 114 2.1E-33 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS14255 4d22b5aeec8d817b89bed164bfaddf28 475 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 237 252 - T 22-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PP4_RS14255 4d22b5aeec8d817b89bed164bfaddf28 475 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 448 468 8.8E-10 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS14255 4d22b5aeec8d817b89bed164bfaddf28 475 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 431 448 8.8E-10 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS14255 4d22b5aeec8d817b89bed164bfaddf28 475 PANTHER PTHR32071 1 475 4.3E-170 T 22-04-2016 PP4_RS14255 4d22b5aeec8d817b89bed164bfaddf28 475 Gene3D G3DSA:1.10.8.60 325 393 1.6E-23 T 22-04-2016 PP4_RS14255 4d22b5aeec8d817b89bed164bfaddf28 475 SUPERFAMILY SSF52172 4 193 8.4E-40 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS18740 80c729d0a3bf8458ae84cbc72b6dd84e 295 SUPERFAMILY SSF111331 3 287 5.23E-58 T 22-04-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain PP4_RS18740 80c729d0a3bf8458ae84cbc72b6dd84e 295 Pfam PF00781 Diacylglycerol kinase catalytic domain 9 124 1.9E-21 T 22-04-2016 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 PP4_RS18740 80c729d0a3bf8458ae84cbc72b6dd84e 295 SMART SM00046 5 134 8.2E-5 T 22-04-2016 IPR001206 Diacylglycerol kinase, catalytic domain GO:0016301 PP4_RS18740 80c729d0a3bf8458ae84cbc72b6dd84e 295 PANTHER PTHR12358 27 295 5.7E-39 T 22-04-2016 PP4_RS18740 80c729d0a3bf8458ae84cbc72b6dd84e 295 Hamap MF_01377 Probable lipid kinase YegS [yegS]. 3 292 46.862 T 22-04-2016 IPR022433 Lipid kinase YegS GO:0001727|GO:0046872 PP4_RS18740 80c729d0a3bf8458ae84cbc72b6dd84e 295 TIGRFAM TIGR03702 lip_kinase_YegS: lipid kinase YegS 5 291 1.4E-137 T 22-04-2016 IPR022433 Lipid kinase YegS GO:0001727|GO:0046872 PP4_RS18740 80c729d0a3bf8458ae84cbc72b6dd84e 295 TIGRFAM TIGR00147 TIGR00147: lipid kinase, YegS/Rv2252/BmrU family 7 286 2.4E-57 T 22-04-2016 IPR005218 Diacylglycerol/lipid kinase PP4_RS08140 bc3722b129233f385c59e4e32221e4e9 564 PIRSF PIRSF001294 1 564 1.5E-243 T 22-04-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 PP4_RS08140 bc3722b129233f385c59e4e32221e4e9 564 TIGRFAM TIGR00680 kdpA: K+-transporting ATPase, A subunit 4 562 5.2E-227 T 22-04-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 PP4_RS08140 bc3722b129233f385c59e4e32221e4e9 564 Pfam PF03814 Potassium-transporting ATPase A subunit 11 560 2.0E-242 T 22-04-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 PP4_RS08140 bc3722b129233f385c59e4e32221e4e9 564 Hamap MF_00275 Potassium-transporting ATPase potassium-binding subunit [kdpA]. 2 562 34.637 T 22-04-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 PP4_RS08140 bc3722b129233f385c59e4e32221e4e9 564 PANTHER PTHR30607 2 564 1.8E-302 T 22-04-2016 IPR004623 Potassium-transporting ATPase A chain GO:0005886|GO:0006813|GO:0008556 PP4_RS14555 ddb61c88b1c6fbdbdff1204d1707c02c 90 ProDom PD339292 LIPID A SYNTHASE LIPID-A-DISACCHARIDE TRANSFERASE GLYCOSYLTRANSFERASE BIOSYNTHESIS N-TERMINAL BIOSYNTHESIS SYNTHESIS 3 82 3.0E-34 T 22-04-2016 IPR011499 Lipid A biosynthesis GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 PP4_RS14555 ddb61c88b1c6fbdbdff1204d1707c02c 90 PIRSF PIRSF028440 1 90 2.7E-35 T 22-04-2016 IPR014546 Uncharacterised conserved protein, lipid A biosynthesis PP4_RS14555 ddb61c88b1c6fbdbdff1204d1707c02c 90 SMART SM01259 10 81 5.0E-43 T 22-04-2016 IPR011499 Lipid A biosynthesis GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 PP4_RS14555 ddb61c88b1c6fbdbdff1204d1707c02c 90 Pfam PF07578 Lipid A Biosynthesis N-terminal domain 10 80 7.7E-33 T 22-04-2016 IPR011499 Lipid A biosynthesis GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 PP4_RS27225 362a2c425f9e48177914ab53f1238654 148 Pfam PF00583 Acetyltransferase (GNAT) family 56 134 2.3E-13 T 22-04-2016 IPR000182 GNAT domain GO:0008080 PP4_RS27225 362a2c425f9e48177914ab53f1238654 148 PANTHER PTHR10545 1 145 4.5E-56 T 22-04-2016 PP4_RS27225 362a2c425f9e48177914ab53f1238654 148 SUPERFAMILY SSF55729 4 134 3.82E-32 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS27225 362a2c425f9e48177914ab53f1238654 148 Gene3D G3DSA:3.40.630.30 2 145 3.1E-34 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS27225 362a2c425f9e48177914ab53f1238654 148 PANTHER PTHR10545:SF39 1 145 4.5E-56 T 22-04-2016 IPR032962 Acetyltransferase HPA2/HPA3 GO:0016746 PP4_RS20810 0ea4a1d7065940599bcb37eaedd2a154 164 Hamap MF_00746 Protein SprT [sprT]. 3 158 37.305 T 22-04-2016 IPR023483 Uncharacterised protein family SprT PP4_RS20810 0ea4a1d7065940599bcb37eaedd2a154 164 SMART SM00731 7 158 7.2E-47 T 22-04-2016 IPR006640 SprT-like PP4_RS20810 0ea4a1d7065940599bcb37eaedd2a154 164 PANTHER PTHR38773 1 164 2.1E-73 T 22-04-2016 PP4_RS20810 0ea4a1d7065940599bcb37eaedd2a154 164 Pfam PF10263 SprT-like family 10 156 5.3E-28 T 22-04-2016 IPR006640 SprT-like PP4_RS02365 cb47279962cf6b90ebaa4f84ab29d921 473 PANTHER PTHR21666 199 463 2.7E-74 T 22-04-2016 PP4_RS02365 cb47279962cf6b90ebaa4f84ab29d921 473 Gene3D G3DSA:3.10.350.10 113 156 9.5E-4 T 22-04-2016 IPR018392 LysM domain PP4_RS02365 cb47279962cf6b90ebaa4f84ab29d921 473 SUPERFAMILY SSF51261 183 431 5.13E-74 T 22-04-2016 IPR011055 Duplicated hybrid motif PP4_RS02365 cb47279962cf6b90ebaa4f84ab29d921 473 Pfam PF01551 Peptidase family M23 334 430 1.2E-32 T 22-04-2016 IPR016047 Peptidase M23 PP4_RS02365 cb47279962cf6b90ebaa4f84ab29d921 473 Gene3D G3DSA:2.70.70.10 286 431 2.6E-46 T 22-04-2016 PP4_RS02365 cb47279962cf6b90ebaa4f84ab29d921 473 PANTHER PTHR21666:SF221 199 463 2.7E-74 T 22-04-2016 PP4_RS02365 cb47279962cf6b90ebaa4f84ab29d921 473 Pfam PF04225 Opacity-associated protein A LysM-like domain 110 187 2.9E-9 T 22-04-2016 IPR007340 Opacity-associated protein A PP4_RS08235 93a225bd3a820f3cd7ca377ee39e0d83 148 SUPERFAMILY SSF53098 4 142 1.01E-57 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PP4_RS08235 93a225bd3a820f3cd7ca377ee39e0d83 148 Gene3D G3DSA:3.30.420.10 2 144 1.9E-60 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PP4_RS08235 93a225bd3a820f3cd7ca377ee39e0d83 148 Hamap MF_00042 Ribonuclease H [rnhA]. 2 148 33.16 T 22-04-2016 IPR022892 Ribonuclease H GO:0004523 PP4_RS08235 93a225bd3a820f3cd7ca377ee39e0d83 148 PANTHER PTHR10642 1 145 3.3E-58 T 22-04-2016 PP4_RS08235 93a225bd3a820f3cd7ca377ee39e0d83 148 Pfam PF00075 RNase H 4 141 1.1E-49 T 22-04-2016 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 PP4_RS14565 5aefb26cafa14602bc431ff61c6f22f9 525 Gene3D G3DSA:3.50.50.60 169 352 6.0E-21 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS14565 5aefb26cafa14602bc431ff61c6f22f9 525 Gene3D G3DSA:3.50.50.60 30 95 6.0E-21 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS14565 5aefb26cafa14602bc431ff61c6f22f9 525 Hamap MF_00212 Probable malate:quinone oxidoreductase [mqo]. 27 516 52.676 T 22-04-2016 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254|UniPathway: UPA00223 PP4_RS14565 5aefb26cafa14602bc431ff61c6f22f9 525 SUPERFAMILY SSF51905 26 90 4.1E-25 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS14565 5aefb26cafa14602bc431ff61c6f22f9 525 SUPERFAMILY SSF51905 123 348 4.1E-25 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS14565 5aefb26cafa14602bc431ff61c6f22f9 525 PANTHER PTHR13847 27 448 2.8E-194 T 22-04-2016 PP4_RS14565 5aefb26cafa14602bc431ff61c6f22f9 525 PANTHER PTHR13847:SF214 27 448 2.8E-194 T 22-04-2016 PP4_RS14565 5aefb26cafa14602bc431ff61c6f22f9 525 Pfam PF06039 Malate:quinone oxidoreductase (Mqo) 30 516 4.8E-232 T 22-04-2016 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254|UniPathway: UPA00223 PP4_RS14565 5aefb26cafa14602bc431ff61c6f22f9 525 TIGRFAM TIGR01320 mal_quin_oxido: malate dehydrogenase (acceptor) 31 514 2.4E-204 T 22-04-2016 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254|UniPathway: UPA00223 PP4_RS03805 766f3d76b1e4ddce8d370f69aaeda964 339 PANTHER PTHR11606:SF3 23 289 1.2E-105 T 22-04-2016 IPR016211 Glutamate/phenylalanine/leucine/valine dehydrogenase, bacterial/archaeal GO:0016639|GO:0055114 PP4_RS03805 766f3d76b1e4ddce8d370f69aaeda964 339 PIRSF PIRSF000188 1 339 2.4E-137 T 22-04-2016 IPR016211 Glutamate/phenylalanine/leucine/valine dehydrogenase, bacterial/archaeal GO:0016639|GO:0055114 PP4_RS03805 766f3d76b1e4ddce8d370f69aaeda964 339 Gene3D G3DSA:3.40.50.720 146 329 7.1E-45 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS03805 766f3d76b1e4ddce8d370f69aaeda964 339 PANTHER PTHR11606 23 289 1.2E-105 T 22-04-2016 PP4_RS03805 766f3d76b1e4ddce8d370f69aaeda964 339 SUPERFAMILY SSF51735 137 335 7.14E-46 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS03805 766f3d76b1e4ddce8d370f69aaeda964 339 Gene3D G3DSA:3.40.192.10 1 145 4.7E-53 T 22-04-2016 PP4_RS03805 766f3d76b1e4ddce8d370f69aaeda964 339 SUPERFAMILY SSF53223 2 134 4.8E-40 T 22-04-2016 PP4_RS03805 766f3d76b1e4ddce8d370f69aaeda964 339 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 23 128 3.3E-22 T 22-04-2016 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 PP4_RS03805 766f3d76b1e4ddce8d370f69aaeda964 339 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 280 291 2.5E-14 T 22-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 PP4_RS03805 766f3d76b1e4ddce8d370f69aaeda964 339 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 64 78 2.5E-14 T 22-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 PP4_RS03805 766f3d76b1e4ddce8d370f69aaeda964 339 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 170 190 2.5E-14 T 22-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 PP4_RS03805 766f3d76b1e4ddce8d370f69aaeda964 339 SMART SM00839 138 339 1.3E-62 T 22-04-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 PP4_RS03805 766f3d76b1e4ddce8d370f69aaeda964 339 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 211 288 1.2E-9 T 22-04-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 PP4_RS03805 766f3d76b1e4ddce8d370f69aaeda964 339 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 72 85 - T 22-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 PP4_RS03270 d7fccfcf4607e60b16531053dafbaa63 637 Gene3D G3DSA:2.40.37.10 459 591 1.7E-13 T 22-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 PP4_RS03270 d7fccfcf4607e60b16531053dafbaa63 637 Gene3D G3DSA:2.40.37.10 339 363 1.7E-13 T 22-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 PP4_RS03270 d7fccfcf4607e60b16531053dafbaa63 637 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 99 351 8.5E-45 T 22-04-2016 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Reactome: REACT_13 PP4_RS03270 d7fccfcf4607e60b16531053dafbaa63 637 TIGRFAM TIGR01273 speA: arginine decarboxylase 14 636 3.1E-269 T 22-04-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 PP4_RS03270 d7fccfcf4607e60b16531053dafbaa63 637 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 282 297 - T 22-04-2016 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site Reactome: REACT_13 PP4_RS03270 d7fccfcf4607e60b16531053dafbaa63 637 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 356 565 2.1E-25 T 22-04-2016 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Reactome: REACT_13 PP4_RS03270 d7fccfcf4607e60b16531053dafbaa63 637 PRINTS PR01180 Arginine decarboxylase signature 99 113 9.7E-70 T 22-04-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 PP4_RS03270 d7fccfcf4607e60b16531053dafbaa63 637 PRINTS PR01180 Arginine decarboxylase signature 203 225 9.7E-70 T 22-04-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 PP4_RS03270 d7fccfcf4607e60b16531053dafbaa63 637 PRINTS PR01180 Arginine decarboxylase signature 75 90 9.7E-70 T 22-04-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 PP4_RS03270 d7fccfcf4607e60b16531053dafbaa63 637 PRINTS PR01180 Arginine decarboxylase signature 153 168 9.7E-70 T 22-04-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 PP4_RS03270 d7fccfcf4607e60b16531053dafbaa63 637 PRINTS PR01180 Arginine decarboxylase signature 179 200 9.7E-70 T 22-04-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 PP4_RS03270 d7fccfcf4607e60b16531053dafbaa63 637 PRINTS PR01180 Arginine decarboxylase signature 546 567 9.7E-70 T 22-04-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 PP4_RS03270 d7fccfcf4607e60b16531053dafbaa63 637 PRINTS PR01180 Arginine decarboxylase signature 468 489 9.7E-70 T 22-04-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 PP4_RS03270 d7fccfcf4607e60b16531053dafbaa63 637 PRINTS PR01180 Arginine decarboxylase signature 493 518 9.7E-70 T 22-04-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 PP4_RS03270 d7fccfcf4607e60b16531053dafbaa63 637 PRINTS PR01180 Arginine decarboxylase signature 330 347 9.7E-70 T 22-04-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 PP4_RS03270 d7fccfcf4607e60b16531053dafbaa63 637 SUPERFAMILY SSF51419 75 352 1.07E-66 T 22-04-2016 IPR029066 PLP-binding barrel PP4_RS03270 d7fccfcf4607e60b16531053dafbaa63 637 Hamap MF_01417 Biosynthetic arginine decarboxylase [speA]. 12 637 42.715 T 22-04-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 PP4_RS03270 d7fccfcf4607e60b16531053dafbaa63 637 PIRSF PIRSF001336 1 637 3.6E-251 T 22-04-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 PP4_RS03270 d7fccfcf4607e60b16531053dafbaa63 637 SUPERFAMILY SSF50621 459 570 2.02E-6 T 22-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 PP4_RS03270 d7fccfcf4607e60b16531053dafbaa63 637 PANTHER PTHR11482 443 601 3.3E-252 T 22-04-2016 PP4_RS03270 d7fccfcf4607e60b16531053dafbaa63 637 PANTHER PTHR11482 1 373 3.3E-252 T 22-04-2016 PP4_RS03270 d7fccfcf4607e60b16531053dafbaa63 637 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 130 142 1.6E-15 T 22-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 PP4_RS03270 d7fccfcf4607e60b16531053dafbaa63 637 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 340 359 1.6E-15 T 22-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 PP4_RS03270 d7fccfcf4607e60b16531053dafbaa63 637 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 246 259 1.6E-15 T 22-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 PP4_RS03270 d7fccfcf4607e60b16531053dafbaa63 637 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 107 125 1.6E-15 T 22-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 PP4_RS03270 d7fccfcf4607e60b16531053dafbaa63 637 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 546 559 1.6E-15 T 22-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 PP4_RS03270 d7fccfcf4607e60b16531053dafbaa63 637 PANTHER PTHR11482:SF36 443 601 3.3E-252 T 22-04-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 PP4_RS03270 d7fccfcf4607e60b16531053dafbaa63 637 PANTHER PTHR11482:SF36 1 373 3.3E-252 T 22-04-2016 IPR002985 Arginine decarboxylase GO:0006527|GO:0008295|GO:0008792 KEGG: 00330+4.1.1.19|MetaCyc: PWY-40|MetaCyc: PWY-43|MetaCyc: PWY-6305|MetaCyc: PWY-6834 PP4_RS03270 d7fccfcf4607e60b16531053dafbaa63 637 Gene3D G3DSA:3.20.20.10 77 338 1.8E-58 T 22-04-2016 IPR029066 PLP-binding barrel PP4_RS03025 f0355312c8c4c4ae0f83084a8f5141d2 330 SUPERFAMILY SSF53300 89 278 3.2E-34 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS03025 f0355312c8c4c4ae0f83084a8f5141d2 330 PANTHER PTHR22550 1 307 2.4E-96 T 22-04-2016 PP4_RS03025 f0355312c8c4c4ae0f83084a8f5141d2 330 Pfam PF00092 von Willebrand factor type A domain 93 275 1.5E-25 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS03025 f0355312c8c4c4ae0f83084a8f5141d2 330 Gene3D G3DSA:3.40.50.410 92 277 2.1E-21 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS03025 f0355312c8c4c4ae0f83084a8f5141d2 330 SMART SM00327 91 275 2.7E-17 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS03025 f0355312c8c4c4ae0f83084a8f5141d2 330 PANTHER PTHR22550:SF12 1 307 2.4E-96 T 22-04-2016 PP4_RS17730 65ef8a297edf0837ef59899305bd8cf3 288 PANTHER PTHR30193 6 288 1.3E-75 T 22-04-2016 PP4_RS17730 65ef8a297edf0837ef59899305bd8cf3 288 Gene3D G3DSA:1.10.3720.10 4 278 5.2E-43 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS17730 65ef8a297edf0837ef59899305bd8cf3 288 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 82 278 1.3E-15 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS17730 65ef8a297edf0837ef59899305bd8cf3 288 PANTHER PTHR30193:SF6 6 288 1.3E-75 T 22-04-2016 PP4_RS17730 65ef8a297edf0837ef59899305bd8cf3 288 SUPERFAMILY SSF161098 52 277 3.27E-46 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS25300 6878bfe9d26c16cebd003f4e431e1bee 727 PANTHER PTHR30509:SF8 5 706 1.9E-289 T 22-04-2016 PP4_RS25300 6878bfe9d26c16cebd003f4e431e1bee 727 PANTHER PTHR30509 5 706 1.9E-289 T 22-04-2016 PP4_RS25300 6878bfe9d26c16cebd003f4e431e1bee 727 Pfam PF12805 FUSC-like inner membrane protein yccS 70 355 8.9E-114 T 22-04-2016 IPR032692 Integral membrane protein YccS, N-terminal PP4_RS25300 6878bfe9d26c16cebd003f4e431e1bee 727 Pfam PF13515 Fusaric acid resistance protein-like 413 532 7.5E-21 T 22-04-2016 PP4_RS25300 6878bfe9d26c16cebd003f4e431e1bee 727 TIGRFAM TIGR01666 YCCS: TIGR01666 family membrane protein 14 717 1.3E-227 T 22-04-2016 IPR010019 Integral membrane protein, YccS PP4_RS25300 6878bfe9d26c16cebd003f4e431e1bee 727 TIGRFAM TIGR01667 YCCS_YHJK: integral membrane protein, YccS/YhfK family 12 719 2.4E-276 T 22-04-2016 IPR010020 Integral membrane protein, YccS/YhfK PP4_RS10030 1e564d92d2732bc7d796d9d0c0300f81 384 Gene3D G3DSA:3.40.640.10 18 252 2.0E-81 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS10030 1e564d92d2732bc7d796d9d0c0300f81 384 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 197 216 - T 22-04-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site PP4_RS10030 1e564d92d2732bc7d796d9d0c0300f81 384 PIRSF PIRSF005572 3 382 7.9E-110 T 22-04-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 PP4_RS10030 1e564d92d2732bc7d796d9d0c0300f81 384 Gene3D G3DSA:3.90.1150.10 253 373 1.9E-31 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS10030 1e564d92d2732bc7d796d9d0c0300f81 384 PANTHER PTHR11601 5 384 7.9E-162 T 22-04-2016 PP4_RS10030 1e564d92d2732bc7d796d9d0c0300f81 384 PANTHER PTHR11601:SF45 5 384 7.9E-162 T 22-04-2016 PP4_RS10030 1e564d92d2732bc7d796d9d0c0300f81 384 Pfam PF00266 Aminotransferase class-V 7 367 4.1E-71 T 22-04-2016 IPR000192 Aminotransferase class V domain PP4_RS10030 1e564d92d2732bc7d796d9d0c0300f81 384 SUPERFAMILY SSF53383 5 377 5.17E-95 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS10355 c836c3ba7f85129e195fbd9d7a566a41 477 PANTHER PTHR11751:SF10 93 475 5.8E-97 T 22-04-2016 PP4_RS10355 c836c3ba7f85129e195fbd9d7a566a41 477 SMART SM00345 17 76 1.4E-18 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS10355 c836c3ba7f85129e195fbd9d7a566a41 477 Gene3D G3DSA:3.40.640.10 157 365 4.2E-55 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS10355 c836c3ba7f85129e195fbd9d7a566a41 477 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 76 5.3E-18 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS10355 c836c3ba7f85129e195fbd9d7a566a41 477 SUPERFAMILY SSF53383 114 475 7.29E-82 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS10355 c836c3ba7f85129e195fbd9d7a566a41 477 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 2.1E-5 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS10355 c836c3ba7f85129e195fbd9d7a566a41 477 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 2.1E-5 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS10355 c836c3ba7f85129e195fbd9d7a566a41 477 PANTHER PTHR11751 93 475 5.8E-97 T 22-04-2016 PP4_RS10355 c836c3ba7f85129e195fbd9d7a566a41 477 SUPERFAMILY SSF46785 9 80 2.12E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS10355 c836c3ba7f85129e195fbd9d7a566a41 477 Gene3D G3DSA:1.10.10.10 10 80 4.8E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS10355 c836c3ba7f85129e195fbd9d7a566a41 477 Pfam PF00155 Aminotransferase class I and II 156 407 2.1E-14 T 22-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PP4_RS12890 cac05da89cfc811c27e07dad66636cb7 303 SUPERFAMILY SSF53850 92 296 3.98E-41 T 22-04-2016 PP4_RS12890 cac05da89cfc811c27e07dad66636cb7 303 Gene3D G3DSA:1.10.10.10 7 89 1.8E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS12890 cac05da89cfc811c27e07dad66636cb7 303 PANTHER PTHR30537:SF5 1 302 2.2E-106 T 22-04-2016 PP4_RS12890 cac05da89cfc811c27e07dad66636cb7 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 64 2.8E-17 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS12890 cac05da89cfc811c27e07dad66636cb7 303 PANTHER PTHR30537 1 302 2.2E-106 T 22-04-2016 PP4_RS12890 cac05da89cfc811c27e07dad66636cb7 303 Gene3D G3DSA:3.40.190.10 180 261 5.2E-18 T 22-04-2016 PP4_RS12890 cac05da89cfc811c27e07dad66636cb7 303 Gene3D G3DSA:3.40.190.10 94 179 2.2E-18 T 22-04-2016 PP4_RS12890 cac05da89cfc811c27e07dad66636cb7 303 SUPERFAMILY SSF46785 6 114 3.29E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS12890 cac05da89cfc811c27e07dad66636cb7 303 Pfam PF03466 LysR substrate binding domain 91 294 4.6E-39 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS10580 958c342c9d026623e082acf4ea3c3664 237 Gene3D G3DSA:1.20.120.530 70 214 1.3E-18 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PP4_RS10580 958c342c9d026623e082acf4ea3c3664 237 Pfam PF00392 Bacterial regulatory proteins, gntR family 7 66 3.8E-15 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS10580 958c342c9d026623e082acf4ea3c3664 237 Gene3D G3DSA:1.10.10.10 7 67 1.6E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS10580 958c342c9d026623e082acf4ea3c3664 237 SUPERFAMILY SSF48008 72 216 2.12E-17 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PP4_RS10580 958c342c9d026623e082acf4ea3c3664 237 SMART SM00345 8 66 4.2E-12 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS10580 958c342c9d026623e082acf4ea3c3664 237 PANTHER PTHR11751 1 92 1.3E-29 T 22-04-2016 PP4_RS10580 958c342c9d026623e082acf4ea3c3664 237 SMART SM00895 76 213 5.0E-21 T 22-04-2016 IPR011711 GntR, C-terminal PP4_RS10580 958c342c9d026623e082acf4ea3c3664 237 Pfam PF07729 FCD domain 78 212 8.7E-18 T 22-04-2016 IPR011711 GntR, C-terminal PP4_RS10580 958c342c9d026623e082acf4ea3c3664 237 SUPERFAMILY SSF46785 7 95 1.41E-16 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS10580 958c342c9d026623e082acf4ea3c3664 237 PANTHER PTHR11751:SF355 1 92 1.3E-29 T 22-04-2016 PP4_RS11675 cd1a158f15709ca542feea33e86491e1 472 Pfam PF00324 Amino acid permease 26 461 1.6E-100 T 22-04-2016 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 PP4_RS11675 cd1a158f15709ca542feea33e86491e1 472 PIRSF PIRSF006060 6 465 7.6E-66 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS11675 cd1a158f15709ca542feea33e86491e1 472 PANTHER PTHR11785:SF29 18 456 2.1E-143 T 22-04-2016 PP4_RS11675 cd1a158f15709ca542feea33e86491e1 472 PANTHER PTHR11785 18 456 2.1E-143 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS12540 01916d012cebafc7f11fe28ee4fa28f0 391 SUPERFAMILY SSF53187 5 201 6.88E-88 T 22-04-2016 PP4_RS12540 01916d012cebafc7f11fe28ee4fa28f0 391 SUPERFAMILY SSF53187 302 388 6.88E-88 T 22-04-2016 PP4_RS12540 01916d012cebafc7f11fe28ee4fa28f0 391 PANTHER PTHR11014 10 391 3.4E-152 T 22-04-2016 PP4_RS12540 01916d012cebafc7f11fe28ee4fa28f0 391 PANTHER PTHR11014:SF63 10 391 3.4E-152 T 22-04-2016 PP4_RS12540 01916d012cebafc7f11fe28ee4fa28f0 391 PIRSF PIRSF005962 4 390 1.4E-122 T 22-04-2016 IPR017439 Amidohydrolase GO:0016787 PP4_RS12540 01916d012cebafc7f11fe28ee4fa28f0 391 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 20 376 2.5E-108 T 22-04-2016 IPR017439 Amidohydrolase GO:0016787 PP4_RS12540 01916d012cebafc7f11fe28ee4fa28f0 391 Pfam PF07687 Peptidase dimerisation domain 191 284 1.2E-8 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain PP4_RS12540 01916d012cebafc7f11fe28ee4fa28f0 391 SUPERFAMILY SSF55031 188 300 2.09E-28 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain PP4_RS12540 01916d012cebafc7f11fe28ee4fa28f0 391 Gene3D G3DSA:3.40.630.10 302 389 7.2E-102 T 22-04-2016 PP4_RS12540 01916d012cebafc7f11fe28ee4fa28f0 391 Gene3D G3DSA:3.40.630.10 3 182 7.2E-102 T 22-04-2016 PP4_RS12540 01916d012cebafc7f11fe28ee4fa28f0 391 Gene3D G3DSA:3.30.70.360 185 301 1.5E-37 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain PP4_RS12540 01916d012cebafc7f11fe28ee4fa28f0 391 Pfam PF01546 Peptidase family M20/M25/M40 77 385 6.5E-34 T 22-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 PP4_RS23875 b8c78c32ce0f99f13892693a9df3f202 797 PANTHER PTHR32552 166 797 8.7E-104 T 22-04-2016 PP4_RS23875 b8c78c32ce0f99f13892693a9df3f202 797 Pfam PF00593 TonB dependent receptor 570 796 1.2E-27 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS23875 b8c78c32ce0f99f13892693a9df3f202 797 Gene3D G3DSA:2.40.170.20 285 797 1.3E-121 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS23875 b8c78c32ce0f99f13892693a9df3f202 797 Gene3D G3DSA:2.170.130.10 160 280 4.2E-32 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS23875 b8c78c32ce0f99f13892693a9df3f202 797 Pfam PF07715 TonB-dependent Receptor Plug Domain 172 268 1.1E-17 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS23875 b8c78c32ce0f99f13892693a9df3f202 797 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 173 795 1.0E-87 T 22-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 PP4_RS23875 b8c78c32ce0f99f13892693a9df3f202 797 SMART SM00965 68 119 6.6E-9 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS23875 b8c78c32ce0f99f13892693a9df3f202 797 SUPERFAMILY SSF56935 163 797 1.22E-121 T 22-04-2016 PP4_RS23875 b8c78c32ce0f99f13892693a9df3f202 797 PANTHER PTHR32552:SF17 166 797 8.7E-104 T 22-04-2016 PP4_RS12205 6a0e547604e1cd81ed059496b55879da 724 SUPERFAMILY SSF53448 72 297 2.65E-12 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS12205 6a0e547604e1cd81ed059496b55879da 724 SUPERFAMILY SSF53448 324 397 2.65E-12 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS12205 6a0e547604e1cd81ed059496b55879da 724 Pfam PF13632 Glycosyl transferase family group 2 166 385 2.1E-47 T 22-04-2016 IPR001173 Glycosyltransferase 2-like PP4_RS12205 6a0e547604e1cd81ed059496b55879da 724 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 524 624 5.6E-15 T 22-04-2016 IPR007831 General secretory system II, protein E, N-terminal GO:0005524|GO:0006810 PP4_RS12205 6a0e547604e1cd81ed059496b55879da 724 PANTHER PTHR30258:SF2 478 636 1.0E-19 T 22-04-2016 PP4_RS12205 6a0e547604e1cd81ed059496b55879da 724 PANTHER PTHR30258 478 636 1.0E-19 T 22-04-2016 PP4_RS12205 6a0e547604e1cd81ed059496b55879da 724 SUPERFAMILY SSF160246 485 622 1.88E-25 T 22-04-2016 PP4_RS06280 5b6c923909e0c966261e0eb16461fb84 228 SMART SM00796 3 201 8.5E-84 T 22-04-2016 IPR003833 Carboxyltransferase domain, subdomain C and D PP4_RS06280 5b6c923909e0c966261e0eb16461fb84 228 Gene3D G3DSA:2.40.100.10 87 225 3.6E-48 T 22-04-2016 IPR029000 Cyclophilin-like domain PP4_RS06280 5b6c923909e0c966261e0eb16461fb84 228 Pfam PF02682 Allophanate hydrolase subunit 1 4 201 2.7E-59 T 22-04-2016 IPR003833 Carboxyltransferase domain, subdomain C and D PP4_RS06280 5b6c923909e0c966261e0eb16461fb84 228 PANTHER PTHR34698:SF2 1 227 4.7E-84 T 22-04-2016 PP4_RS06280 5b6c923909e0c966261e0eb16461fb84 228 SUPERFAMILY SSF50891 87 217 4.55E-42 T 22-04-2016 IPR029000 Cyclophilin-like domain PP4_RS06280 5b6c923909e0c966261e0eb16461fb84 228 Gene3D G3DSA:3.30.1360.40 5 77 1.5E-8 T 22-04-2016 IPR024946 Arginine repressor C-terminal-like domain PP4_RS06280 5b6c923909e0c966261e0eb16461fb84 228 SUPERFAMILY SSF160467 4 92 1.23E-13 T 22-04-2016 PP4_RS06280 5b6c923909e0c966261e0eb16461fb84 228 PANTHER PTHR34698 1 227 4.7E-84 T 22-04-2016 PP4_RS06280 5b6c923909e0c966261e0eb16461fb84 228 TIGRFAM TIGR00370 TIGR00370: sensor histidine kinase inhibitor, KipI family 12 210 2.7E-46 T 22-04-2016 IPR010016 KipI family PP4_RS07990 37485a71b13373ad64cc902983e44b08 590 Pfam PF02910 Fumarate reductase flavoprotein C-term 463 590 3.8E-40 T 22-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 PP4_RS07990 37485a71b13373ad64cc902983e44b08 590 PANTHER PTHR11632 3 576 0.0 T 22-04-2016 PP4_RS07990 37485a71b13373ad64cc902983e44b08 590 SUPERFAMILY SSF56425 240 358 6.88E-40 T 22-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain PP4_RS07990 37485a71b13373ad64cc902983e44b08 590 TIGRFAM TIGR01812 sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 10 590 6.1E-252 T 22-04-2016 IPR014006 Succinate dehydrogenase/fumarate reductase, flavoprotein subunit GO:0016627|GO:0022900|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 PP4_RS07990 37485a71b13373ad64cc902983e44b08 590 SUPERFAMILY SSF46977 455 590 3.92E-49 T 22-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 PP4_RS07990 37485a71b13373ad64cc902983e44b08 590 ProSitePatterns PS00504 Fumarate reductase / succinate dehydrogenase FAD-binding site. 44 53 - T 22-04-2016 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site GO:0016491|GO:0055114 PP4_RS07990 37485a71b13373ad64cc902983e44b08 590 Gene3D G3DSA:3.90.700.10 246 352 2.3E-39 T 22-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain PP4_RS07990 37485a71b13373ad64cc902983e44b08 590 Gene3D G3DSA:3.50.50.60 4 245 2.7E-117 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS07990 37485a71b13373ad64cc902983e44b08 590 Gene3D G3DSA:3.50.50.60 353 425 2.7E-117 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS07990 37485a71b13373ad64cc902983e44b08 590 Gene3D G3DSA:4.10.80.40 558 590 4.7E-21 T 22-04-2016 PP4_RS07990 37485a71b13373ad64cc902983e44b08 590 PANTHER PTHR11632:SF5 3 576 0.0 T 22-04-2016 PP4_RS07990 37485a71b13373ad64cc902983e44b08 590 TIGRFAM TIGR01816 sdhA_forward: succinate dehydrogenase, flavoprotein subunit 8 590 4.4E-300 T 22-04-2016 IPR011281 Succinate dehydrogenase, flavoprotein subunit GO:0006099|GO:0016627|GO:0050660|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 PP4_RS07990 37485a71b13373ad64cc902983e44b08 590 SUPERFAMILY SSF51905 5 262 4.69E-74 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS07990 37485a71b13373ad64cc902983e44b08 590 SUPERFAMILY SSF51905 361 427 4.69E-74 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS07990 37485a71b13373ad64cc902983e44b08 590 Pfam PF00890 FAD binding domain 10 407 5.7E-117 T 22-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain PP4_RS07990 37485a71b13373ad64cc902983e44b08 590 PIRSF PIRSF000171 1 579 4.8E-47 T 22-04-2016 IPR030664 Succinate dehydrogenase/fumarate reductase, alpha/adenylylsulphate reductase subunit PP4_RS07990 37485a71b13373ad64cc902983e44b08 590 Gene3D G3DSA:1.20.58.100 448 557 9.0E-41 T 22-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 PP4_RS07990 37485a71b13373ad64cc902983e44b08 590 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 11 30 6.8E-5 T 22-04-2016 PP4_RS07990 37485a71b13373ad64cc902983e44b08 590 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 370 392 6.8E-5 T 22-04-2016 PP4_RS06405 82a47a54bc810fc6b46f0176cdd33dea 815 Pfam PF00593 TonB dependent receptor 581 813 1.8E-30 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS06405 82a47a54bc810fc6b46f0176cdd33dea 815 PANTHER PTHR32552:SF37 155 815 8.4E-203 T 22-04-2016 PP4_RS06405 82a47a54bc810fc6b46f0176cdd33dea 815 SMART SM00965 69 120 6.0E-14 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS06405 82a47a54bc810fc6b46f0176cdd33dea 815 Gene3D G3DSA:2.170.130.10 142 273 2.6E-34 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS06405 82a47a54bc810fc6b46f0176cdd33dea 815 Pfam PF07715 TonB-dependent Receptor Plug Domain 163 266 8.6E-15 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS06405 82a47a54bc810fc6b46f0176cdd33dea 815 Pfam PF07660 Secretin and TonB N terminus short domain 72 119 4.7E-8 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS06405 82a47a54bc810fc6b46f0176cdd33dea 815 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 798 815 - T 22-04-2016 IPR010917 TonB-dependent receptor, conserved site PP4_RS06405 82a47a54bc810fc6b46f0176cdd33dea 815 PANTHER PTHR32552 155 815 8.4E-203 T 22-04-2016 PP4_RS06405 82a47a54bc810fc6b46f0176cdd33dea 815 Gene3D G3DSA:2.40.170.20 281 815 5.7E-132 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS06405 82a47a54bc810fc6b46f0176cdd33dea 815 SUPERFAMILY SSF56935 155 815 3.66E-124 T 22-04-2016 PP4_RS06405 82a47a54bc810fc6b46f0176cdd33dea 815 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 165 815 1.9E-105 T 22-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 PP4_RS09130 ef44b4eaa59159454da1c4c61a71b035 273 SUPERFAMILY SSF53335 20 239 7.63E-28 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS09130 ef44b4eaa59159454da1c4c61a71b035 273 PANTHER PTHR10108 34 190 6.1E-29 T 22-04-2016 PP4_RS09130 ef44b4eaa59159454da1c4c61a71b035 273 PANTHER PTHR10108 209 232 6.1E-29 T 22-04-2016 PP4_RS09130 ef44b4eaa59159454da1c4c61a71b035 273 Gene3D G3DSA:3.40.50.150 47 233 2.4E-21 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS09130 ef44b4eaa59159454da1c4c61a71b035 273 Pfam PF13649 Methyltransferase domain 60 151 5.7E-10 T 22-04-2016 PP4_RS09130 ef44b4eaa59159454da1c4c61a71b035 273 PANTHER PTHR10108:SF868 34 190 6.1E-29 T 22-04-2016 PP4_RS09130 ef44b4eaa59159454da1c4c61a71b035 273 PANTHER PTHR10108:SF868 209 232 6.1E-29 T 22-04-2016 PP4_RS01280 f324f40ee6f5d834c4ad33d156a3062f 279 PANTHER PTHR30151:SF0 22 277 2.3E-104 T 22-04-2016 PP4_RS01280 f324f40ee6f5d834c4ad33d156a3062f 279 Gene3D G3DSA:1.10.3720.10 77 273 1.2E-29 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS01280 f324f40ee6f5d834c4ad33d156a3062f 279 PANTHER PTHR30151 22 277 2.3E-104 T 22-04-2016 PP4_RS01280 f324f40ee6f5d834c4ad33d156a3062f 279 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 102 271 1.4E-22 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS01280 f324f40ee6f5d834c4ad33d156a3062f 279 SUPERFAMILY SSF161098 79 263 8.63E-37 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS04775 273283cbbd248b01d6bad7cae07ed502 301 PANTHER PTHR30537 1 297 1.1E-151 T 22-04-2016 PP4_RS04775 273283cbbd248b01d6bad7cae07ed502 301 SUPERFAMILY SSF53850 90 295 2.48E-46 T 22-04-2016 PP4_RS04775 273283cbbd248b01d6bad7cae07ed502 301 Gene3D G3DSA:3.40.190.10 92 177 4.3E-24 T 22-04-2016 PP4_RS04775 273283cbbd248b01d6bad7cae07ed502 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.2E-18 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS04775 273283cbbd248b01d6bad7cae07ed502 301 Pfam PF03466 LysR substrate binding domain 89 291 2.0E-44 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS04775 273283cbbd248b01d6bad7cae07ed502 301 Gene3D G3DSA:3.40.190.10 178 259 3.1E-10 T 22-04-2016 PP4_RS04775 273283cbbd248b01d6bad7cae07ed502 301 PANTHER PTHR30537:SF13 1 297 1.1E-151 T 22-04-2016 PP4_RS04775 273283cbbd248b01d6bad7cae07ed502 301 SUPERFAMILY SSF46785 4 87 1.07E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS04775 273283cbbd248b01d6bad7cae07ed502 301 Gene3D G3DSA:1.10.10.10 3 85 1.0E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS27015 e0b30c03dd211911c4d8f8ecea2e9b20 702 SUPERFAMILY SSF81271 376 448 1.09E-21 T 22-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 PP4_RS27015 e0b30c03dd211911c4d8f8ecea2e9b20 702 PANTHER PTHR21262 1 702 0.0 T 22-04-2016 PP4_RS27015 e0b30c03dd211911c4d8f8ecea2e9b20 702 SUPERFAMILY SSF109604 4 191 9.73E-72 T 22-04-2016 PP4_RS27015 e0b30c03dd211911c4d8f8ecea2e9b20 702 PANTHER PTHR21262:SF0 1 702 0.0 T 22-04-2016 PP4_RS27015 e0b30c03dd211911c4d8f8ecea2e9b20 702 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 26 698 1.7E-243 T 22-04-2016 IPR004811 RelA/SpoT family GO:0015969 PP4_RS27015 e0b30c03dd211911c4d8f8ecea2e9b20 702 SMART SM00954 235 345 1.8E-63 T 22-04-2016 IPR007685 RelA/SpoT GO:0015969 PP4_RS27015 e0b30c03dd211911c4d8f8ecea2e9b20 702 Gene3D G3DSA:3.30.460.10 178 325 2.9E-45 T 22-04-2016 PP4_RS27015 e0b30c03dd211911c4d8f8ecea2e9b20 702 SUPERFAMILY SSF55021 625 700 2.24E-7 T 22-04-2016 PP4_RS27015 e0b30c03dd211911c4d8f8ecea2e9b20 702 Pfam PF13328 HD domain 26 175 1.9E-52 T 22-04-2016 IPR003607 HD/PDEase domain PP4_RS27015 e0b30c03dd211911c4d8f8ecea2e9b20 702 Gene3D G3DSA:3.30.70.260 625 697 2.5E-7 T 22-04-2016 PP4_RS27015 e0b30c03dd211911c4d8f8ecea2e9b20 702 Pfam PF02824 TGS domain 389 447 2.7E-18 T 22-04-2016 IPR004095 TGS KEGG: 00970+6.1.1.3 PP4_RS27015 e0b30c03dd211911c4d8f8ecea2e9b20 702 Gene3D G3DSA:3.10.20.30 388 448 5.7E-21 T 22-04-2016 IPR012675 Beta-grasp domain PP4_RS27015 e0b30c03dd211911c4d8f8ecea2e9b20 702 SUPERFAMILY SSF81301 181 393 3.76E-60 T 22-04-2016 PP4_RS27015 e0b30c03dd211911c4d8f8ecea2e9b20 702 Pfam PF13291 ACT domain 623 699 1.0E-14 T 22-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 PP4_RS27015 e0b30c03dd211911c4d8f8ecea2e9b20 702 Pfam PF04607 Region found in RelA / SpoT proteins 235 345 2.1E-36 T 22-04-2016 IPR007685 RelA/SpoT GO:0015969 PP4_RS27015 e0b30c03dd211911c4d8f8ecea2e9b20 702 SMART SM00471 41 153 1.9E-8 T 22-04-2016 IPR003607 HD/PDEase domain PP4_RS10565 49f1a3baa2e0aeb795063b92c6e34a5e 491 PANTHER PTHR11699:SF203 7 491 4.8E-271 T 22-04-2016 PP4_RS10565 49f1a3baa2e0aeb795063b92c6e34a5e 491 Pfam PF00171 Aldehyde dehydrogenase family 20 479 3.6E-149 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PP4_RS10565 49f1a3baa2e0aeb795063b92c6e34a5e 491 SUPERFAMILY SSF53720 15 486 3.53E-146 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS10565 49f1a3baa2e0aeb795063b92c6e34a5e 491 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 286 297 - T 22-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 PP4_RS10565 49f1a3baa2e0aeb795063b92c6e34a5e 491 Gene3D G3DSA:3.40.605.10 16 273 3.0E-78 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS10565 49f1a3baa2e0aeb795063b92c6e34a5e 491 Gene3D G3DSA:3.40.309.10 274 456 9.6E-62 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PP4_RS10565 49f1a3baa2e0aeb795063b92c6e34a5e 491 PANTHER PTHR11699 7 491 4.8E-271 T 22-04-2016 PP4_RS10565 49f1a3baa2e0aeb795063b92c6e34a5e 491 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 258 265 - T 22-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 PP4_RS17915 480cc5245d22f6896c2c150de73af9d1 282 SUPERFAMILY SSF51197 1 280 1.19E-83 T 22-04-2016 PP4_RS17915 480cc5245d22f6896c2c150de73af9d1 282 PANTHER PTHR30468:SF5 1 279 9.9E-65 T 22-04-2016 PP4_RS17915 480cc5245d22f6896c2c150de73af9d1 282 PANTHER PTHR30468 1 279 9.9E-65 T 22-04-2016 PP4_RS17915 480cc5245d22f6896c2c150de73af9d1 282 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 3 274 4.6E-60 T 22-04-2016 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: REACT_13 PP4_RS17915 480cc5245d22f6896c2c150de73af9d1 282 Gene3D G3DSA:3.60.130.10 1 280 6.6E-87 T 22-04-2016 PP4_RS15970 6e1a055d95571a27c793ea6b2c8c1414 632 Gene3D G3DSA:3.40.50.2300 506 629 2.2E-16 T 22-04-2016 PP4_RS15970 6e1a055d95571a27c793ea6b2c8c1414 632 SMART SM00387 376 487 7.3E-27 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS15970 6e1a055d95571a27c793ea6b2c8c1414 632 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 377 485 3.3E-17 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS15970 6e1a055d95571a27c793ea6b2c8c1414 632 SUPERFAMILY SSF55874 323 485 1.18E-36 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS15970 6e1a055d95571a27c793ea6b2c8c1414 632 Pfam PF08448 PAS fold 102 209 4.2E-25 T 22-04-2016 IPR013656 PAS fold-4 PP4_RS15970 6e1a055d95571a27c793ea6b2c8c1414 632 Pfam PF00072 Response regulator receiver domain 511 622 9.4E-11 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS15970 6e1a055d95571a27c793ea6b2c8c1414 632 SUPERFAMILY SSF47384 253 332 1.51E-12 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS15970 6e1a055d95571a27c793ea6b2c8c1414 632 PANTHER PTHR24423:SF479 93 206 1.4E-195 T 22-04-2016 PP4_RS15970 6e1a055d95571a27c793ea6b2c8c1414 632 PANTHER PTHR24423:SF479 246 627 1.4E-195 T 22-04-2016 PP4_RS15970 6e1a055d95571a27c793ea6b2c8c1414 632 PANTHER PTHR24423:SF479 11 20 1.4E-195 T 22-04-2016 PP4_RS15970 6e1a055d95571a27c793ea6b2c8c1414 632 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 97 215 8.9E-11 T 22-04-2016 IPR000014 PAS domain PP4_RS15970 6e1a055d95571a27c793ea6b2c8c1414 632 Gene3D G3DSA:3.30.450.20 95 223 1.1E-16 T 22-04-2016 PP4_RS15970 6e1a055d95571a27c793ea6b2c8c1414 632 PANTHER PTHR24423 93 206 1.4E-195 T 22-04-2016 PP4_RS15970 6e1a055d95571a27c793ea6b2c8c1414 632 PANTHER PTHR24423 246 627 1.4E-195 T 22-04-2016 PP4_RS15970 6e1a055d95571a27c793ea6b2c8c1414 632 PANTHER PTHR24423 11 20 1.4E-195 T 22-04-2016 PP4_RS15970 6e1a055d95571a27c793ea6b2c8c1414 632 Gene3D G3DSA:3.30.565.10 335 490 1.6E-36 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS15970 6e1a055d95571a27c793ea6b2c8c1414 632 SMART SM00388 267 332 2.2E-11 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS15970 6e1a055d95571a27c793ea6b2c8c1414 632 Pfam PF00512 His Kinase A (phospho-acceptor) domain 267 332 1.9E-10 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS15970 6e1a055d95571a27c793ea6b2c8c1414 632 Gene3D G3DSA:1.10.287.130 260 328 1.9E-9 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS15970 6e1a055d95571a27c793ea6b2c8c1414 632 SUPERFAMILY SSF55785 86 206 4.36E-16 T 22-04-2016 IPR000014 PAS domain PP4_RS15970 6e1a055d95571a27c793ea6b2c8c1414 632 SUPERFAMILY SSF52172 507 628 4.98E-17 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS15970 6e1a055d95571a27c793ea6b2c8c1414 632 PRINTS PR00344 Bacterial sensor protein C-terminal signature 412 426 1.5E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS15970 6e1a055d95571a27c793ea6b2c8c1414 632 PRINTS PR00344 Bacterial sensor protein C-terminal signature 447 465 1.5E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS15970 6e1a055d95571a27c793ea6b2c8c1414 632 PRINTS PR00344 Bacterial sensor protein C-terminal signature 471 484 1.5E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS15970 6e1a055d95571a27c793ea6b2c8c1414 632 SMART SM00448 509 623 2.0E-8 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS12260 2056044106f713c242f51fb4595a4f6f 272 Pfam PF12833 Helix-turn-helix domain 191 267 1.2E-22 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS12260 2056044106f713c242f51fb4595a4f6f 272 Gene3D G3DSA:1.10.10.60 172 223 1.1E-11 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS12260 2056044106f713c242f51fb4595a4f6f 272 SUPERFAMILY SSF46689 174 219 1.84E-5 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS12260 2056044106f713c242f51fb4595a4f6f 272 SUPERFAMILY SSF46689 222 268 1.48E-11 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS12260 2056044106f713c242f51fb4595a4f6f 272 PANTHER PTHR11019:SF75 10 267 6.8E-45 T 22-04-2016 PP4_RS12260 2056044106f713c242f51fb4595a4f6f 272 Pfam PF02311 AraC-like ligand binding domain 19 145 5.5E-15 T 22-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PP4_RS12260 2056044106f713c242f51fb4595a4f6f 272 Gene3D G3DSA:1.10.10.60 224 268 4.0E-15 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS12260 2056044106f713c242f51fb4595a4f6f 272 Gene3D G3DSA:2.60.120.280 22 112 1.4E-11 T 22-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PP4_RS12260 2056044106f713c242f51fb4595a4f6f 272 SUPERFAMILY SSF51215 23 139 4.18E-12 T 22-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PP4_RS12260 2056044106f713c242f51fb4595a4f6f 272 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 236 251 1.1E-7 T 22-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PP4_RS12260 2056044106f713c242f51fb4595a4f6f 272 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 251 267 1.1E-7 T 22-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PP4_RS12260 2056044106f713c242f51fb4595a4f6f 272 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 222 263 - T 22-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PP4_RS12260 2056044106f713c242f51fb4595a4f6f 272 SMART SM00342 185 267 4.3E-29 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS12260 2056044106f713c242f51fb4595a4f6f 272 PANTHER PTHR11019 10 267 6.8E-45 T 22-04-2016 PP4_RS11850 7602c7a44ef4909122635ccdc6ea5537 441 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 351 360 - T 22-04-2016 IPR025944 Sigma-54 interaction domain, conserved site PP4_RS11850 7602c7a44ef4909122635ccdc6ea5537 441 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 162 175 - T 22-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 PP4_RS11850 7602c7a44ef4909122635ccdc6ea5537 441 PANTHER PTHR32071 8 440 6.5E-211 T 22-04-2016 PP4_RS11850 7602c7a44ef4909122635ccdc6ea5537 441 SUPERFAMILY SSF52540 138 379 9.94E-69 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS11850 7602c7a44ef4909122635ccdc6ea5537 441 Gene3D G3DSA:1.10.10.60 386 440 2.1E-10 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS11850 7602c7a44ef4909122635ccdc6ea5537 441 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 224 239 - T 22-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PP4_RS11850 7602c7a44ef4909122635ccdc6ea5537 441 Pfam PF02954 Bacterial regulatory protein, Fis family 401 434 1.7E-7 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS11850 7602c7a44ef4909122635ccdc6ea5537 441 SUPERFAMILY SSF46689 351 440 5.38E-11 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS11850 7602c7a44ef4909122635ccdc6ea5537 441 Gene3D G3DSA:1.10.8.60 311 381 1.8E-20 T 22-04-2016 PP4_RS11850 7602c7a44ef4909122635ccdc6ea5537 441 Pfam PF00158 Sigma-54 interaction domain 139 304 1.8E-71 T 22-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 PP4_RS11850 7602c7a44ef4909122635ccdc6ea5537 441 PANTHER PTHR32071:SF34 8 440 6.5E-211 T 22-04-2016 PP4_RS11850 7602c7a44ef4909122635ccdc6ea5537 441 Gene3D G3DSA:3.40.50.300 135 310 6.0E-59 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS11850 7602c7a44ef4909122635ccdc6ea5537 441 SMART SM00382 158 302 4.7E-13 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS05660 abf541bfac9c0beacd8b7c50359b15dd 289 Gene3D G3DSA:2.70.98.10 3 276 1.4E-10 T 22-04-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 PP4_RS05660 abf541bfac9c0beacd8b7c50359b15dd 289 Pfam PF01263 Aldose 1-epimerase 18 282 2.4E-29 T 22-04-2016 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 PP4_RS05660 abf541bfac9c0beacd8b7c50359b15dd 289 PANTHER PTHR10091 20 289 6.3E-15 T 22-04-2016 PP4_RS05660 abf541bfac9c0beacd8b7c50359b15dd 289 PANTHER PTHR10091:SF5 20 289 6.3E-15 T 22-04-2016 PP4_RS05660 abf541bfac9c0beacd8b7c50359b15dd 289 SUPERFAMILY SSF74650 6 286 6.91E-46 T 22-04-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 PP4_RS00435 c84d5b813728d1aa0458eaaa6ba02577 695 Gene3D G3DSA:1.10.1370.10 155 363 1.3E-140 T 22-04-2016 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 PP4_RS00435 c84d5b813728d1aa0458eaaa6ba02577 695 Gene3D G3DSA:1.10.1370.10 518 690 1.3E-140 T 22-04-2016 IPR024077 Neurolysin/Thimet oligopeptidase, domain 2 PP4_RS00435 c84d5b813728d1aa0458eaaa6ba02577 695 SUPERFAMILY SSF55486 16 688 8.06E-206 T 22-04-2016 PP4_RS00435 c84d5b813728d1aa0458eaaa6ba02577 695 PANTHER PTHR11804:SF8 15 691 0.0 T 22-04-2016 PP4_RS00435 c84d5b813728d1aa0458eaaa6ba02577 695 PANTHER PTHR11804 15 691 0.0 T 22-04-2016 PP4_RS00435 c84d5b813728d1aa0458eaaa6ba02577 695 Pfam PF01432 Peptidase family M3 237 688 8.5E-149 T 22-04-2016 IPR001567 Peptidase M3A/M3B GO:0004222|GO:0006508 PP4_RS00435 c84d5b813728d1aa0458eaaa6ba02577 695 Gene3D G3DSA:3.40.390.10 372 517 2.5E-58 T 22-04-2016 IPR024079 Metallopeptidase, catalytic domain GO:0008237 PP4_RS00435 c84d5b813728d1aa0458eaaa6ba02577 695 Gene3D G3DSA:1.20.1050.40 23 153 1.2E-25 T 22-04-2016 IPR024080 Neurolysin/Thimet oligopeptidase, N-terminal PP4_RS01375 77c4af63d5986f80e3f97f7a0aa006b6 133 Gene3D G3DSA:3.10.290.10 9 105 6.0E-35 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 PP4_RS01375 77c4af63d5986f80e3f97f7a0aa006b6 133 SUPERFAMILY SSF55174 10 105 1.7E-26 T 22-04-2016 PP4_RS01375 77c4af63d5986f80e3f97f7a0aa006b6 133 Pfam PF01479 S4 domain 11 56 1.1E-9 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 PP4_RS01375 77c4af63d5986f80e3f97f7a0aa006b6 133 PIRSF PIRSF016821 8 133 1.6E-38 T 22-04-2016 IPR025708 Heat shock protein 15 GO:0003677|GO:0003727|GO:0034605|GO:0043023 PP4_RS01375 77c4af63d5986f80e3f97f7a0aa006b6 133 PANTHER PTHR11079:SF70 4 47 1.0E-20 T 22-04-2016 PP4_RS01375 77c4af63d5986f80e3f97f7a0aa006b6 133 PANTHER PTHR11079 4 47 1.0E-20 T 22-04-2016 PP4_RS01375 77c4af63d5986f80e3f97f7a0aa006b6 133 SMART SM00363 11 74 6.0E-5 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 PP4_RS12845 bf623d816038ef6ebfe934af23144d97 452 TIGRFAM TIGR03229 benzo_1_2_benA: benzoate 1,2-dioxygenase, large subunit 8 438 1.1E-275 T 22-04-2016 IPR017639 Benzoate 1,2-dioxygenase, large subunit PP4_RS12845 bf623d816038ef6ebfe934af23144d97 452 SUPERFAMILY SSF55961 164 446 1.02E-65 T 22-04-2016 PP4_RS12845 bf623d816038ef6ebfe934af23144d97 452 Gene3D G3DSA:3.90.380.10 154 444 2.3E-89 T 22-04-2016 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 PP4_RS12845 bf623d816038ef6ebfe934af23144d97 452 Pfam PF00355 Rieske [2Fe-2S] domain 45 129 9.0E-22 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 PP4_RS12845 bf623d816038ef6ebfe934af23144d97 452 ProSitePatterns PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 88 111 - T 22-04-2016 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site GO:0005506|GO:0016705|GO:0051537|GO:0055114 PP4_RS12845 bf623d816038ef6ebfe934af23144d97 452 Gene3D G3DSA:2.102.10.10 45 153 4.2E-23 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 PP4_RS12845 bf623d816038ef6ebfe934af23144d97 452 SUPERFAMILY SSF50022 9 163 1.05E-45 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 PP4_RS12845 bf623d816038ef6ebfe934af23144d97 452 PANTHER PTHR21266 1 379 4.9E-150 T 22-04-2016 PP4_RS12845 bf623d816038ef6ebfe934af23144d97 452 PANTHER PTHR21266:SF30 1 379 4.9E-150 T 22-04-2016 PP4_RS12845 bf623d816038ef6ebfe934af23144d97 452 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 196 382 2.4E-16 T 22-04-2016 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 PP4_RS12845 bf623d816038ef6ebfe934af23144d97 452 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 60 75 9.9E-46 T 22-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 PP4_RS12845 bf623d816038ef6ebfe934af23144d97 452 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 189 211 9.9E-46 T 22-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 PP4_RS12845 bf623d816038ef6ebfe934af23144d97 452 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 81 101 9.9E-46 T 22-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 PP4_RS12845 bf623d816038ef6ebfe934af23144d97 452 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 102 122 9.9E-46 T 22-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 PP4_RS12845 bf623d816038ef6ebfe934af23144d97 452 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 30 55 9.9E-46 T 22-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 PP4_RS12845 bf623d816038ef6ebfe934af23144d97 452 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 148 174 9.9E-46 T 22-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 PP4_RS24900 65bdb782b291ca57c6dec37f9c5c0b6c 195 TIGRFAM TIGR00730 TIGR00730: TIGR00730 family protein 5 179 1.3E-62 T 22-04-2016 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG PP4_RS24900 65bdb782b291ca57c6dec37f9c5c0b6c 195 PANTHER PTHR31223 3 195 2.1E-88 T 22-04-2016 PP4_RS24900 65bdb782b291ca57c6dec37f9c5c0b6c 195 SUPERFAMILY SSF102405 3 181 5.34E-62 T 22-04-2016 PP4_RS24900 65bdb782b291ca57c6dec37f9c5c0b6c 195 Gene3D G3DSA:3.40.50.450 3 184 7.4E-69 T 22-04-2016 PP4_RS24900 65bdb782b291ca57c6dec37f9c5c0b6c 195 PANTHER PTHR31223:SF0 3 195 2.1E-88 T 22-04-2016 PP4_RS24900 65bdb782b291ca57c6dec37f9c5c0b6c 195 Pfam PF03641 Possible lysine decarboxylase 48 176 1.1E-41 T 22-04-2016 IPR031100 LOG family PP4_RS18070 3e87f69a9ab0cd5dfe95d1e40bff2130 559 PANTHER PTHR22773 386 547 3.5E-105 T 22-04-2016 PP4_RS18070 3e87f69a9ab0cd5dfe95d1e40bff2130 559 PANTHER PTHR22773 1 362 3.5E-105 T 22-04-2016 PP4_RS18070 3e87f69a9ab0cd5dfe95d1e40bff2130 559 Pfam PF00361 Proton-conducting membrane transporter 134 442 4.7E-29 T 22-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 PP4_RS18070 3e87f69a9ab0cd5dfe95d1e40bff2130 559 PANTHER PTHR22773:SF49 386 547 3.5E-105 T 22-04-2016 PP4_RS18070 3e87f69a9ab0cd5dfe95d1e40bff2130 559 PANTHER PTHR22773:SF49 1 362 3.5E-105 T 22-04-2016 PP4_RS07290 75c3c7b712c5f420f9d102513962254b 246 SUPERFAMILY SSF88659 94 162 2.22E-12 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS07290 75c3c7b712c5f420f9d102513962254b 246 PANTHER PTHR30385:SF7 15 246 4.4E-72 T 22-04-2016 PP4_RS07290 75c3c7b712c5f420f9d102513962254b 246 Pfam PF04545 Sigma-70, region 4 189 237 2.5E-18 T 22-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS07290 75c3c7b712c5f420f9d102513962254b 246 SUPERFAMILY SSF88946 13 92 3.92E-24 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS07290 75c3c7b712c5f420f9d102513962254b 246 PANTHER PTHR30385 15 246 4.4E-72 T 22-04-2016 PP4_RS07290 75c3c7b712c5f420f9d102513962254b 246 PRINTS PR00046 Major sigma-70 factor signature 210 225 8.8E-11 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS07290 75c3c7b712c5f420f9d102513962254b 246 PRINTS PR00046 Major sigma-70 factor signature 225 236 8.8E-11 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS07290 75c3c7b712c5f420f9d102513962254b 246 PRINTS PR00046 Major sigma-70 factor signature 47 60 8.8E-11 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS07290 75c3c7b712c5f420f9d102513962254b 246 PRINTS PR00046 Major sigma-70 factor signature 193 205 8.8E-11 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS07290 75c3c7b712c5f420f9d102513962254b 246 SUPERFAMILY SSF88659 166 243 1.66E-20 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS07290 75c3c7b712c5f420f9d102513962254b 246 Gene3D G3DSA:1.10.10.10 177 242 1.7E-15 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS07290 75c3c7b712c5f420f9d102513962254b 246 PIRSF PIRSF000770 3 244 3.4E-34 T 22-04-2016 IPR016263 RNA polymerase sporulation-specific sigma factor GO:0003677|GO:0006351|GO:0016987|GO:0030435 PP4_RS07290 75c3c7b712c5f420f9d102513962254b 246 TIGRFAM TIGR02479 FliA_WhiG: RNA polymerase sigma factor, FliA/WhiG family 20 240 1.5E-82 T 22-04-2016 IPR012845 RNA polymerase sigma factor, FliA/WhiG GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 PP4_RS07290 75c3c7b712c5f420f9d102513962254b 246 Pfam PF04542 Sigma-70 region 2 20 92 2.3E-17 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS07290 75c3c7b712c5f420f9d102513962254b 246 Gene3D G3DSA:1.10.10.10 94 137 7.9E-4 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS07290 75c3c7b712c5f420f9d102513962254b 246 Pfam PF04539 Sigma-70 region 3 101 168 4.3E-11 T 22-04-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS07290 75c3c7b712c5f420f9d102513962254b 246 Hamap MF_00962 RNA polymerase sigma factor FliA [fliA]. 6 243 66.13 T 22-04-2016 IPR028617 RNA polymerase sigma factor FliA GO:0003677|GO:0003899|GO:0006352|GO:0006355|GO:0016987 PP4_RS07290 75c3c7b712c5f420f9d102513962254b 246 Gene3D G3DSA:1.10.601.10 10 84 1.4E-17 T 22-04-2016 PP4_RS07290 75c3c7b712c5f420f9d102513962254b 246 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 16 240 3.6E-34 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS01965 038c4e868caa6584095d3600941b78de 725 PANTHER PTHR21631:SF7 501 724 1.3E-152 T 22-04-2016 PP4_RS01965 038c4e868caa6584095d3600941b78de 725 PANTHER PTHR21631:SF7 35 41 1.3E-152 T 22-04-2016 PP4_RS01965 038c4e868caa6584095d3600941b78de 725 Gene3D G3DSA:1.20.1220.12 590 723 1.6E-73 T 22-04-2016 PP4_RS01965 038c4e868caa6584095d3600941b78de 725 PANTHER PTHR21631 501 724 1.3E-152 T 22-04-2016 PP4_RS01965 038c4e868caa6584095d3600941b78de 725 PANTHER PTHR21631 35 41 1.3E-152 T 22-04-2016 PP4_RS01965 038c4e868caa6584095d3600941b78de 725 SUPERFAMILY SSF51645 3 723 0.0 T 22-04-2016 IPR011076 Malate synthase-like GO:0003824 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 PP4_RS01965 038c4e868caa6584095d3600941b78de 725 Hamap MF_00641 Malate synthase G [glcB]. 1 725 416.632 T 22-04-2016 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 PP4_RS01965 038c4e868caa6584095d3600941b78de 725 TIGRFAM TIGR01345 malate_syn_G: malate synthase G 4 722 0.0 T 22-04-2016 IPR006253 Malate synthase G GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 PP4_RS01965 038c4e868caa6584095d3600941b78de 725 Gene3D G3DSA:2.170.170.11 136 264 2.5E-69 T 22-04-2016 IPR023310 Malate synthase G, beta sub-domain GO:0004474 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 PP4_RS01965 038c4e868caa6584095d3600941b78de 725 Gene3D G3DSA:2.170.170.11 298 335 2.5E-69 T 22-04-2016 IPR023310 Malate synthase G, beta sub-domain GO:0004474 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 PP4_RS01965 038c4e868caa6584095d3600941b78de 725 Gene3D G3DSA:3.20.20.360 266 296 1.6E-147 T 22-04-2016 PP4_RS01965 038c4e868caa6584095d3600941b78de 725 Gene3D G3DSA:3.20.20.360 336 588 1.6E-147 T 22-04-2016 PP4_RS01965 038c4e868caa6584095d3600941b78de 725 Gene3D G3DSA:3.20.20.360 89 135 1.6E-147 T 22-04-2016 PP4_RS01965 038c4e868caa6584095d3600941b78de 725 Gene3D G3DSA:1.10.1860.10 1 88 2.0E-37 T 22-04-2016 PP4_RS01965 038c4e868caa6584095d3600941b78de 725 Pfam PF01274 Malate synthase 17 697 1.7E-193 T 22-04-2016 IPR001465 Malate synthase GO:0004474|GO:0006097 KEGG: 00620+2.3.3.9|KEGG: 00630+2.3.3.9|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7118|MetaCyc: PWY-7294|MetaCyc: PWY-7295|UniPathway: UPA00703 PP4_RS03150 427242c8796807c6bb9d85bd1fa2dc45 464 Gene3D G3DSA:2.30.170.30 4 55 1.0E-23 T 22-04-2016 PP4_RS03150 427242c8796807c6bb9d85bd1fa2dc45 464 Pfam PF06751 Ethanolamine ammonia lyase large subunit (EutB) 13 442 6.8E-220 T 22-04-2016 IPR010628 Ethanolamine ammonia lyase large subunit GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7|UniPathway: UPA00560 PP4_RS03150 427242c8796807c6bb9d85bd1fa2dc45 464 PANTHER PTHR39329:SF1 2 462 3.6E-303 T 22-04-2016 PP4_RS03150 427242c8796807c6bb9d85bd1fa2dc45 464 Gene3D G3DSA:3.20.20.70 143 451 4.9E-164 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS03150 427242c8796807c6bb9d85bd1fa2dc45 464 PANTHER PTHR39329 2 462 3.6E-303 T 22-04-2016 PP4_RS03150 427242c8796807c6bb9d85bd1fa2dc45 464 PIRSF PIRSF018788 2 461 4.6E-239 T 22-04-2016 IPR010628 Ethanolamine ammonia lyase large subunit GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7|UniPathway: UPA00560 PP4_RS03150 427242c8796807c6bb9d85bd1fa2dc45 464 Gene3D G3DSA:1.10.220.70 56 142 1.2E-40 T 22-04-2016 PP4_RS13920 969896ac09b621e707093f02ab2c9137 394 PANTHER PTHR23501 21 391 9.2E-105 T 22-04-2016 PP4_RS13920 969896ac09b621e707093f02ab2c9137 394 Pfam PF07690 Major Facilitator Superfamily 23 332 2.4E-38 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS13920 969896ac09b621e707093f02ab2c9137 394 Gene3D G3DSA:1.20.1250.20 21 206 3.9E-32 T 22-04-2016 PP4_RS13920 969896ac09b621e707093f02ab2c9137 394 PANTHER PTHR23501:SF4 21 391 9.2E-105 T 22-04-2016 PP4_RS13920 969896ac09b621e707093f02ab2c9137 394 SUPERFAMILY SSF103473 6 389 2.49E-59 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS13920 969896ac09b621e707093f02ab2c9137 394 Gene3D G3DSA:1.20.1250.20 213 389 6.2E-15 T 22-04-2016 PP4_RS06155 1b36b2bc22dea810e655184127bf0c27 153 SMART SM00344 1 110 1.3E-47 T 22-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 PP4_RS06155 1b36b2bc22dea810e655184127bf0c27 153 ProSitePatterns PS00519 AsnC-type HTH domain signature. 19 45 - T 22-04-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PP4_RS06155 1b36b2bc22dea810e655184127bf0c27 153 SUPERFAMILY SSF54909 61 150 8.22E-22 T 22-04-2016 IPR011008 Dimeric alpha-beta barrel PP4_RS06155 1b36b2bc22dea810e655184127bf0c27 153 SUPERFAMILY SSF46785 1 60 4.18E-17 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS06155 1b36b2bc22dea810e655184127bf0c27 153 Pfam PF01037 Lrp/AsnC ligand binding domain 67 141 1.9E-22 T 22-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PP4_RS06155 1b36b2bc22dea810e655184127bf0c27 153 Pfam PF13412 Winged helix-turn-helix DNA-binding 1 47 2.3E-18 T 22-04-2016 PP4_RS06155 1b36b2bc22dea810e655184127bf0c27 153 Gene3D G3DSA:3.30.70.920 54 138 3.2E-31 T 22-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PP4_RS06155 1b36b2bc22dea810e655184127bf0c27 153 PANTHER PTHR30154 1 150 1.7E-79 T 22-04-2016 PP4_RS06155 1b36b2bc22dea810e655184127bf0c27 153 PANTHER PTHR30154:SF17 1 150 1.7E-79 T 22-04-2016 PP4_RS06155 1b36b2bc22dea810e655184127bf0c27 153 Gene3D G3DSA:1.10.10.10 2 53 4.8E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS06155 1b36b2bc22dea810e655184127bf0c27 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 9.8E-13 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS06155 1b36b2bc22dea810e655184127bf0c27 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 9.8E-13 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS06155 1b36b2bc22dea810e655184127bf0c27 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 9.8E-13 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS01165 381e928d605e5e86eea8665c18a74f90 301 PANTHER PTHR30468 15 299 5.9E-153 T 22-04-2016 PP4_RS01165 381e928d605e5e86eea8665c18a74f90 301 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 17 281 2.4E-54 T 22-04-2016 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: REACT_13 PP4_RS01165 381e928d605e5e86eea8665c18a74f90 301 SUPERFAMILY SSF51197 14 297 2.66E-93 T 22-04-2016 PP4_RS01165 381e928d605e5e86eea8665c18a74f90 301 PANTHER PTHR30468:SF5 15 299 5.9E-153 T 22-04-2016 PP4_RS01165 381e928d605e5e86eea8665c18a74f90 301 Gene3D G3DSA:3.60.130.10 13 298 1.4E-93 T 22-04-2016 PP4_RS07535 44716a8df4dcee35bb510d158e085606 260 SUPERFAMILY SSF111364 25 260 6.02E-73 T 22-04-2016 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 PP4_RS07535 44716a8df4dcee35bb510d158e085606 260 Pfam PF03502 Nucleoside-specific channel-forming protein, Tsx 50 257 2.8E-11 T 22-04-2016 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 PP4_RS07535 44716a8df4dcee35bb510d158e085606 260 Gene3D G3DSA:2.40.230.20 20 260 3.3E-84 T 22-04-2016 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 PP4_RS06435 1f2f406469e50a1f5c890652b7248891 178 PANTHER PTHR10458 1 167 5.5E-84 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 PP4_RS06435 1f2f406469e50a1f5c890652b7248891 178 Gene3D G3DSA:3.90.45.10 1 166 2.7E-52 T 22-04-2016 IPR023635 Peptide deformylase PP4_RS06435 1f2f406469e50a1f5c890652b7248891 178 PANTHER PTHR10458:SF4 1 167 5.5E-84 T 22-04-2016 PP4_RS06435 1f2f406469e50a1f5c890652b7248891 178 Pfam PF01327 Polypeptide deformylase 3 159 1.2E-45 T 22-04-2016 IPR023635 Peptide deformylase PP4_RS06435 1f2f406469e50a1f5c890652b7248891 178 SUPERFAMILY SSF56420 1 166 7.59E-56 T 22-04-2016 IPR023635 Peptide deformylase PP4_RS06435 1f2f406469e50a1f5c890652b7248891 178 Hamap MF_00163 Peptide deformylase [def]. 1 168 26.58 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 PP4_RS06435 1f2f406469e50a1f5c890652b7248891 178 PRINTS PR01576 Peptide deformylase signature 35 64 8.1E-29 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 PP4_RS06435 1f2f406469e50a1f5c890652b7248891 178 PRINTS PR01576 Peptide deformylase signature 111 129 8.1E-29 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 PP4_RS06435 1f2f406469e50a1f5c890652b7248891 178 PRINTS PR01576 Peptide deformylase signature 99 110 8.1E-29 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 PP4_RS06435 1f2f406469e50a1f5c890652b7248891 178 PRINTS PR01576 Peptide deformylase signature 130 159 8.1E-29 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 PP4_RS06435 1f2f406469e50a1f5c890652b7248891 178 PIRSF PIRSF004749 1 168 6.9E-46 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 PP4_RS06435 1f2f406469e50a1f5c890652b7248891 178 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 4 161 6.6E-35 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 PP4_RS08890 7b5e3e43a2a360ba0f9be5620ea6ecd6 226 PANTHER PTHR30098:SF2 1 220 1.5E-80 T 22-04-2016 PP4_RS08890 7b5e3e43a2a360ba0f9be5620ea6ecd6 226 Hamap MF_00688 Leucyl/phenylalanyl-tRNA--protein transferase [aat]. 1 226 102.33 T 22-04-2016 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 PP4_RS08890 7b5e3e43a2a360ba0f9be5620ea6ecd6 226 TIGRFAM TIGR00667 aat: leucyl/phenylalanyl-tRNA--protein transferase 32 217 1.1E-63 T 22-04-2016 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 PP4_RS08890 7b5e3e43a2a360ba0f9be5620ea6ecd6 226 PANTHER PTHR30098 1 220 1.5E-80 T 22-04-2016 PP4_RS08890 7b5e3e43a2a360ba0f9be5620ea6ecd6 226 Pfam PF03588 Leucyl/phenylalanyl-tRNA protein transferase 34 204 1.7E-74 T 22-04-2016 IPR004616 Leucyl/phenylalanyl-tRNA-protein transferase GO:0008914|GO:0030163 PP4_RS08890 7b5e3e43a2a360ba0f9be5620ea6ecd6 226 SUPERFAMILY SSF55729 2 222 7.95E-95 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS27290 ff86d9e65258872d25e7f4c44ea1f024 161 Gene3D G3DSA:3.10.129.10 6 155 5.3E-56 T 22-04-2016 IPR029069 HotDog domain PP4_RS27290 ff86d9e65258872d25e7f4c44ea1f024 161 Pfam PF03061 Thioesterase superfamily 23 96 7.0E-19 T 22-04-2016 IPR006683 Thioesterase domain PP4_RS27290 ff86d9e65258872d25e7f4c44ea1f024 161 PANTHER PTHR11049 7 161 6.6E-70 T 22-04-2016 PP4_RS27290 ff86d9e65258872d25e7f4c44ea1f024 161 SUPERFAMILY SSF54637 3 156 4.98E-47 T 22-04-2016 IPR029069 HotDog domain PP4_RS24695 65c70407e5827e3625e93e3e558d4b47 438 SUPERFAMILY SSF55124 199 328 2.78E-17 T 22-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PP4_RS24695 65c70407e5827e3625e93e3e558d4b47 438 SUPERFAMILY SSF56014 337 428 5.5E-11 T 22-04-2016 PP4_RS24695 65c70407e5827e3625e93e3e558d4b47 438 Pfam PF01077 Nitrite and sulphite reductase 4Fe-4S domain 96 172 2.1E-9 T 22-04-2016 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain GO:0016491|GO:0020037|GO:0051536|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PP4_RS24695 65c70407e5827e3625e93e3e558d4b47 438 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 262 322 1.0E-12 T 22-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PP4_RS24695 65c70407e5827e3625e93e3e558d4b47 438 Pfam PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain 27 86 1.4E-9 T 22-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PP4_RS24695 65c70407e5827e3625e93e3e558d4b47 438 SUPERFAMILY SSF56014 96 231 9.81E-20 T 22-04-2016 PP4_RS24695 65c70407e5827e3625e93e3e558d4b47 438 SUPERFAMILY SSF55124 12 93 7.69E-13 T 22-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PP4_RS24695 65c70407e5827e3625e93e3e558d4b47 438 Gene3D G3DSA:3.30.413.10 96 223 6.0E-11 T 22-04-2016 PP4_RS24695 65c70407e5827e3625e93e3e558d4b47 438 Gene3D G3DSA:3.30.413.10 337 404 3.1E-8 T 22-04-2016 PP4_RS24695 65c70407e5827e3625e93e3e558d4b47 438 Gene3D G3DSA:3.90.480.10 25 93 1.7E-27 T 22-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PP4_RS24695 65c70407e5827e3625e93e3e558d4b47 438 Gene3D G3DSA:3.90.480.10 253 329 1.7E-27 T 22-04-2016 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain GO:0016491|GO:0055114 KEGG: 00920+1.8.1.2|MetaCyc: PWY-6683|UniPathway: UPA00140 PP4_RS24695 65c70407e5827e3625e93e3e558d4b47 438 TIGRFAM TIGR02435 CobG: precorrin-3B synthase 12 399 8.2E-114 T 22-04-2016 IPR012798 Cobalamin (vitamin B12) biosynthesis CobG-like PP4_RS24695 65c70407e5827e3625e93e3e558d4b47 438 PANTHER PTHR11493 11 404 5.6E-64 T 22-04-2016 PP4_RS07690 24cebbd395b6a9a5760e2589e0ea4151 244 PANTHER PTHR24567:SF28 12 239 5.1E-102 T 22-04-2016 PP4_RS07690 24cebbd395b6a9a5760e2589e0ea4151 244 Pfam PF13545 Crp-like helix-turn-helix domain 163 236 4.8E-17 T 22-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 PP4_RS07690 24cebbd395b6a9a5760e2589e0ea4151 244 PANTHER PTHR24567 12 239 5.1E-102 T 22-04-2016 PP4_RS07690 24cebbd395b6a9a5760e2589e0ea4151 244 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 204 219 2.2E-11 T 22-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 PP4_RS07690 24cebbd395b6a9a5760e2589e0ea4151 244 PRINTS PR00034 CRP bacterial regulatory protein HTH signature 188 204 2.2E-11 T 22-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 PP4_RS07690 24cebbd395b6a9a5760e2589e0ea4151 244 ProSitePatterns PS00042 Crp-type HTH domain signature. 190 213 - T 22-04-2016 IPR018335 Transcription regulator HTH, Crp-type, conserved site GO:0003700|GO:0005622|GO:0006355 PP4_RS07690 24cebbd395b6a9a5760e2589e0ea4151 244 SUPERFAMILY SSF46785 161 239 9.53E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS07690 24cebbd395b6a9a5760e2589e0ea4151 244 Gene3D G3DSA:1.10.10.10 165 239 5.1E-27 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS07690 24cebbd395b6a9a5760e2589e0ea4151 244 SMART SM00419 182 230 2.4E-15 T 22-04-2016 IPR012318 Crp-type HTH domain GO:0003677|GO:0006355 PP4_RS07690 24cebbd395b6a9a5760e2589e0ea4151 244 Gene3D G3DSA:2.60.120.10 14 164 3.6E-32 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS07690 24cebbd395b6a9a5760e2589e0ea4151 244 Pfam PF00027 Cyclic nucleotide-binding domain 45 127 7.8E-16 T 22-04-2016 IPR000595 Cyclic nucleotide-binding domain PP4_RS07690 24cebbd395b6a9a5760e2589e0ea4151 244 SUPERFAMILY SSF51206 18 157 1.02E-30 T 22-04-2016 IPR018490 Cyclic nucleotide-binding-like PP4_RS07690 24cebbd395b6a9a5760e2589e0ea4151 244 SMART SM00100 25 146 3.6E-17 T 22-04-2016 IPR000595 Cyclic nucleotide-binding domain PP4_RS15650 c94392b4cf2646aa805c6827f08b098d 551 SUPERFAMILY SSF55060 83 267 6.62E-9 T 22-04-2016 IPR013750 GHMP kinase, C-terminal domain PP4_RS15650 c94392b4cf2646aa805c6827f08b098d 551 PANTHER PTHR30462 4 328 4.1E-88 T 22-04-2016 PP4_RS15650 c94392b4cf2646aa805c6827f08b098d 551 PANTHER PTHR30462:SF0 4 328 4.1E-88 T 22-04-2016 PP4_RS15650 c94392b4cf2646aa805c6827f08b098d 551 Pfam PF02470 MlaD protein 293 403 6.4E-18 T 22-04-2016 IPR003399 Mce/MlaD PP4_RS15650 c94392b4cf2646aa805c6827f08b098d 551 Pfam PF02470 MlaD protein 50 112 2.8E-9 T 22-04-2016 IPR003399 Mce/MlaD PP4_RS15650 c94392b4cf2646aa805c6827f08b098d 551 Pfam PF02470 MlaD protein 165 225 1.1E-7 T 22-04-2016 IPR003399 Mce/MlaD PP4_RS03410 c1e1cebb85e06172d4b5d5d2c9eb87ab 305 SUPERFAMILY SSF46785 15 100 3.96E-17 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS03410 c1e1cebb85e06172d4b5d5d2c9eb87ab 305 Gene3D G3DSA:1.10.10.10 14 95 1.0E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS03410 c1e1cebb85e06172d4b5d5d2c9eb87ab 305 Pfam PF03466 LysR substrate binding domain 100 303 1.5E-26 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS03410 c1e1cebb85e06172d4b5d5d2c9eb87ab 305 PANTHER PTHR30126:SF16 14 301 8.6E-78 T 22-04-2016 PP4_RS03410 c1e1cebb85e06172d4b5d5d2c9eb87ab 305 Gene3D G3DSA:3.40.190.10 101 221 1.2E-14 T 22-04-2016 PP4_RS03410 c1e1cebb85e06172d4b5d5d2c9eb87ab 305 SUPERFAMILY SSF53850 101 303 1.23E-26 T 22-04-2016 PP4_RS03410 c1e1cebb85e06172d4b5d5d2c9eb87ab 305 PANTHER PTHR30126 14 301 8.6E-78 T 22-04-2016 PP4_RS03410 c1e1cebb85e06172d4b5d5d2c9eb87ab 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 16 75 1.0E-13 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS20120 88802e830b5f76bc56610fb6ac780f4f 323 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 2 181 1.1E-74 T 22-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 PP4_RS20120 88802e830b5f76bc56610fb6ac780f4f 323 SUPERFAMILY SSF51182 1 184 1.55E-75 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS20120 88802e830b5f76bc56610fb6ac780f4f 323 SUPERFAMILY SSF51182 198 317 7.47E-39 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS20120 88802e830b5f76bc56610fb6ac780f4f 323 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 1 177 1.0E-61 T 22-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 PP4_RS20120 88802e830b5f76bc56610fb6ac780f4f 323 PANTHER PTHR21047 1 180 4.9E-73 T 22-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 PP4_RS20120 88802e830b5f76bc56610fb6ac780f4f 323 Gene3D G3DSA:2.60.120.10 1 184 1.4E-78 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS20120 88802e830b5f76bc56610fb6ac780f4f 323 Pfam PF05523 WxcM-like, C-terminal 198 320 5.7E-45 T 22-04-2016 IPR008894 WxcM-like, C-terminal MetaCyc: PWY-6953|MetaCyc: PWY-7688 PP4_RS20120 88802e830b5f76bc56610fb6ac780f4f 323 Gene3D G3DSA:2.60.120.10 217 308 5.9E-7 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS20120 88802e830b5f76bc56610fb6ac780f4f 323 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 5 181 5.9E-73 T 22-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 PP4_RS20120 88802e830b5f76bc56610fb6ac780f4f 323 PANTHER PTHR21047:SF2 1 180 4.9E-73 T 22-04-2016 PP4_RS21755 4994a74795bd7b6f8eb56e4c7a8f9f6f 401 TIGRFAM TIGR00210 gltS: sodium/glutamate symporter 2 396 5.9E-177 T 22-04-2016 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 PP4_RS21755 4994a74795bd7b6f8eb56e4c7a8f9f6f 401 PANTHER PTHR36178 1 401 6.4E-187 T 22-04-2016 PP4_RS21755 4994a74795bd7b6f8eb56e4c7a8f9f6f 401 Pfam PF03616 Sodium/glutamate symporter 3 365 1.6E-151 T 22-04-2016 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 PP4_RS21755 4994a74795bd7b6f8eb56e4c7a8f9f6f 401 PANTHER PTHR36178:SF1 1 401 6.4E-187 T 22-04-2016 IPR004445 Sodium/glutamate symport carrier protein GltS GO:0015501|GO:0015813|GO:0016021 PP4_RS20860 cc4e81d8b3b64ec104e12d01fa64d084 355 PANTHER PTHR22942 3 335 5.4E-202 T 22-04-2016 PP4_RS20860 cc4e81d8b3b64ec104e12d01fa64d084 355 PRINTS PR00142 RecA protein signature 127 156 3.7E-84 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 PP4_RS20860 cc4e81d8b3b64ec104e12d01fa64d084 355 PRINTS PR00142 RecA protein signature 243 272 3.7E-84 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 PP4_RS20860 cc4e81d8b3b64ec104e12d01fa64d084 355 PRINTS PR00142 RecA protein signature 297 314 3.7E-84 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 PP4_RS20860 cc4e81d8b3b64ec104e12d01fa64d084 355 PRINTS PR00142 RecA protein signature 165 194 3.7E-84 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 PP4_RS20860 cc4e81d8b3b64ec104e12d01fa64d084 355 PRINTS PR00142 RecA protein signature 93 122 3.7E-84 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 PP4_RS20860 cc4e81d8b3b64ec104e12d01fa64d084 355 PRINTS PR00142 RecA protein signature 210 238 3.7E-84 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 PP4_RS20860 cc4e81d8b3b64ec104e12d01fa64d084 355 ProSitePatterns PS00321 recA signature. 213 221 - T 22-04-2016 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 PP4_RS20860 cc4e81d8b3b64ec104e12d01fa64d084 355 Hamap MF_00268 Protein RecA [recA]. 5 329 50.944 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 PP4_RS20860 cc4e81d8b3b64ec104e12d01fa64d084 355 PANTHER PTHR22942:SF1 3 335 5.4E-202 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 PP4_RS20860 cc4e81d8b3b64ec104e12d01fa64d084 355 SUPERFAMILY SSF54752 269 325 6.8E-20 T 22-04-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal PP4_RS20860 cc4e81d8b3b64ec104e12d01fa64d084 355 SUPERFAMILY SSF52540 4 267 2.3E-65 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS20860 cc4e81d8b3b64ec104e12d01fa64d084 355 Gene3D G3DSA:3.40.50.300 27 267 1.6E-84 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS20860 cc4e81d8b3b64ec104e12d01fa64d084 355 Gene3D G3DSA:3.30.250.10 269 326 4.7E-27 T 22-04-2016 IPR023400 DNA recombination and repair protein RecA, C-terminal PP4_RS20860 cc4e81d8b3b64ec104e12d01fa64d084 355 Pfam PF00154 recA bacterial DNA recombination protein 7 267 3.2E-143 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 PP4_RS20860 cc4e81d8b3b64ec104e12d01fa64d084 355 SMART SM00382 57 228 8.0E-11 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS20860 cc4e81d8b3b64ec104e12d01fa64d084 355 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 4 324 9.4E-169 T 22-04-2016 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 PP4_RS13135 71f3517653e7e7b56ff7ed73f8c1f9b3 520 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 33 439 3.8E-58 T 22-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 PP4_RS13135 71f3517653e7e7b56ff7ed73f8c1f9b3 520 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 148 173 - T 22-04-2016 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 PP4_RS13135 71f3517653e7e7b56ff7ed73f8c1f9b3 520 PANTHER PTHR11819 2 509 1.4E-253 T 22-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 PP4_RS13135 71f3517653e7e7b56ff7ed73f8c1f9b3 520 Pfam PF00474 Sodium:solute symporter family 33 439 1.0E-111 T 22-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 PP4_RS13135 71f3517653e7e7b56ff7ed73f8c1f9b3 520 PANTHER PTHR11819:SF13 2 509 1.4E-253 T 22-04-2016 PP4_RS26960 d2bc000a9ce29e468b10b827d7371900 301 Pfam PF00696 Amino acid kinase family 28 274 3.1E-44 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PP4_RS26960 d2bc000a9ce29e468b10b827d7371900 301 Gene3D G3DSA:3.40.1160.10 27 296 2.6E-105 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PP4_RS26960 d2bc000a9ce29e468b10b827d7371900 301 PRINTS PR00474 Glutamate 5-kinase family signature 247 267 1.8E-8 T 22-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 PP4_RS26960 d2bc000a9ce29e468b10b827d7371900 301 PRINTS PR00474 Glutamate 5-kinase family signature 197 224 1.8E-8 T 22-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 PP4_RS26960 d2bc000a9ce29e468b10b827d7371900 301 PRINTS PR00474 Glutamate 5-kinase family signature 59 73 1.8E-8 T 22-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 PP4_RS26960 d2bc000a9ce29e468b10b827d7371900 301 Hamap MF_00082_B Acetylglutamate kinase [argB]. 26 297 37.46 T 22-04-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PP4_RS26960 d2bc000a9ce29e468b10b827d7371900 301 SUPERFAMILY SSF53633 10 297 6.15E-99 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PP4_RS26960 d2bc000a9ce29e468b10b827d7371900 301 PIRSF PIRSF000728 13 297 2.8E-111 T 22-04-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PP4_RS26960 d2bc000a9ce29e468b10b827d7371900 301 TIGRFAM TIGR00761 argB: acetylglutamate kinase 29 272 9.6E-80 T 22-04-2016 IPR004662 Acetylglutamate kinase GO:0003991|GO:0005737|GO:0006526 KEGG: 00220+2.7.2.8|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PP4_RS26960 d2bc000a9ce29e468b10b827d7371900 301 PANTHER PTHR23342 12 300 9.0E-122 T 22-04-2016 PP4_RS06360 70258b3e40ed64c65b17a429bd236a99 818 PANTHER PTHR32552:SF37 159 818 3.7E-215 T 22-04-2016 PP4_RS06360 70258b3e40ed64c65b17a429bd236a99 818 Gene3D G3DSA:2.40.170.20 285 818 5.7E-132 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS06360 70258b3e40ed64c65b17a429bd236a99 818 SUPERFAMILY SSF56935 156 818 4.45E-127 T 22-04-2016 PP4_RS06360 70258b3e40ed64c65b17a429bd236a99 818 SMART SM00965 72 122 2.1E-7 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS06360 70258b3e40ed64c65b17a429bd236a99 818 Pfam PF07715 TonB-dependent Receptor Plug Domain 167 270 3.3E-17 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS06360 70258b3e40ed64c65b17a429bd236a99 818 Pfam PF00593 TonB dependent receptor 582 816 4.4E-31 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS06360 70258b3e40ed64c65b17a429bd236a99 818 Pfam PF07660 Secretin and TonB N terminus short domain 73 120 6.4E-7 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS06360 70258b3e40ed64c65b17a429bd236a99 818 Gene3D G3DSA:2.170.130.10 146 277 4.5E-37 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS06360 70258b3e40ed64c65b17a429bd236a99 818 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 169 818 2.6E-105 T 22-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 PP4_RS06360 70258b3e40ed64c65b17a429bd236a99 818 PANTHER PTHR32552 159 818 3.7E-215 T 22-04-2016 PP4_RS08940 23bc5142f31a86925d82057c8dba01de 98 SUPERFAMILY SSF75169 3 97 1.05E-24 T 22-04-2016 IPR027396 DsrEFH-like PP4_RS08940 23bc5142f31a86925d82057c8dba01de 98 PANTHER PTHR37526 3 97 1.1E-19 T 22-04-2016 PP4_RS08940 23bc5142f31a86925d82057c8dba01de 98 Pfam PF04077 DsrH like protein 9 94 1.7E-23 T 22-04-2016 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 PP4_RS08940 23bc5142f31a86925d82057c8dba01de 98 TIGRFAM TIGR03011 sulf_tusB_dsrH: sulfur relay protein TusB/DsrH 4 97 3.5E-28 T 22-04-2016 IPR007215 Sulphur relay, TusB/DsrH GO:0002143|GO:0005737 PP4_RS08940 23bc5142f31a86925d82057c8dba01de 98 Gene3D G3DSA:3.40.1260.10 3 94 4.2E-20 T 22-04-2016 IPR027396 DsrEFH-like PP4_RS14300 deb79c967dc4c95f4b656ef24c79a952 528 SUPERFAMILY SSF52821 106 235 6.94E-29 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS14300 deb79c967dc4c95f4b656ef24c79a952 528 Pfam PF00581 Rhodanese-like domain 16 101 1.3E-7 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS14300 deb79c967dc4c95f4b656ef24c79a952 528 Pfam PF00581 Rhodanese-like domain 277 352 2.7E-8 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS14300 deb79c967dc4c95f4b656ef24c79a952 528 Pfam PF00581 Rhodanese-like domain 132 225 2.5E-8 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS14300 deb79c967dc4c95f4b656ef24c79a952 528 Pfam PF00581 Rhodanese-like domain 380 468 5.3E-7 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS14300 deb79c967dc4c95f4b656ef24c79a952 528 SUPERFAMILY SSF52821 372 524 2.1E-31 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS14300 deb79c967dc4c95f4b656ef24c79a952 528 SUPERFAMILY SSF52821 14 121 1.2E-23 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS14300 deb79c967dc4c95f4b656ef24c79a952 528 Gene3D G3DSA:3.40.250.10 121 235 1.4E-17 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS14300 deb79c967dc4c95f4b656ef24c79a952 528 Gene3D G3DSA:3.40.250.10 366 478 4.5E-20 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS14300 deb79c967dc4c95f4b656ef24c79a952 528 SMART SM00450 267 364 3.9E-8 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS14300 deb79c967dc4c95f4b656ef24c79a952 528 SMART SM00450 377 472 2.8E-4 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS14300 deb79c967dc4c95f4b656ef24c79a952 528 SMART SM00450 131 229 5.8E-6 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS14300 deb79c967dc4c95f4b656ef24c79a952 528 SMART SM00450 8 105 7.7E-13 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS14300 deb79c967dc4c95f4b656ef24c79a952 528 PANTHER PTHR12231:SF83 21 30 1.6E-46 T 22-04-2016 PP4_RS14300 deb79c967dc4c95f4b656ef24c79a952 528 PANTHER PTHR12231:SF83 254 352 1.6E-46 T 22-04-2016 PP4_RS14300 deb79c967dc4c95f4b656ef24c79a952 528 PANTHER PTHR12231 21 30 1.6E-46 T 22-04-2016 PP4_RS14300 deb79c967dc4c95f4b656ef24c79a952 528 PANTHER PTHR12231 254 352 1.6E-46 T 22-04-2016 PP4_RS14300 deb79c967dc4c95f4b656ef24c79a952 528 Gene3D G3DSA:3.40.250.10 14 116 1.1E-18 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS14300 deb79c967dc4c95f4b656ef24c79a952 528 SUPERFAMILY SSF52821 256 352 4.45E-21 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS14300 deb79c967dc4c95f4b656ef24c79a952 528 Gene3D G3DSA:3.40.250.10 261 352 3.0E-15 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS20730 c010354e36d0c886d08103db3bf5da72 746 SUPERFAMILY SSF81271 406 476 1.83E-22 T 22-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 PP4_RS20730 c010354e36d0c886d08103db3bf5da72 746 SUPERFAMILY SSF55021 666 741 1.53E-14 T 22-04-2016 PP4_RS20730 c010354e36d0c886d08103db3bf5da72 746 Pfam PF04607 Region found in RelA / SpoT proteins 262 370 7.5E-38 T 22-04-2016 IPR007685 RelA/SpoT GO:0015969 PP4_RS20730 c010354e36d0c886d08103db3bf5da72 746 Gene3D G3DSA:3.10.20.30 416 478 8.1E-26 T 22-04-2016 IPR012675 Beta-grasp domain PP4_RS20730 c010354e36d0c886d08103db3bf5da72 746 Gene3D G3DSA:3.30.460.10 205 351 2.2E-54 T 22-04-2016 PP4_RS20730 c010354e36d0c886d08103db3bf5da72 746 Gene3D G3DSA:3.30.70.260 666 740 2.1E-18 T 22-04-2016 PP4_RS20730 c010354e36d0c886d08103db3bf5da72 746 SUPERFAMILY SSF109604 18 218 2.86E-48 T 22-04-2016 PP4_RS20730 c010354e36d0c886d08103db3bf5da72 746 Pfam PF13291 ACT domain 665 742 1.8E-18 T 22-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 PP4_RS20730 c010354e36d0c886d08103db3bf5da72 746 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 69 741 4.9E-189 T 22-04-2016 IPR004811 RelA/SpoT family GO:0015969 PP4_RS20730 c010354e36d0c886d08103db3bf5da72 746 PANTHER PTHR21262 69 745 0.0 T 22-04-2016 PP4_RS20730 c010354e36d0c886d08103db3bf5da72 746 PANTHER PTHR21262:SF5 69 745 0.0 T 22-04-2016 PP4_RS20730 c010354e36d0c886d08103db3bf5da72 746 Pfam PF13328 HD domain 40 202 4.6E-45 T 22-04-2016 IPR003607 HD/PDEase domain PP4_RS20730 c010354e36d0c886d08103db3bf5da72 746 SUPERFAMILY SSF81301 207 420 3.76E-64 T 22-04-2016 PP4_RS20730 c010354e36d0c886d08103db3bf5da72 746 Pfam PF02824 TGS domain 416 475 2.4E-22 T 22-04-2016 IPR004095 TGS KEGG: 00970+6.1.1.3 PP4_RS20730 c010354e36d0c886d08103db3bf5da72 746 SMART SM00954 262 372 1.3E-65 T 22-04-2016 IPR007685 RelA/SpoT GO:0015969 PP4_RS13955 b8f257ebf484f27569f8b0848c534dcf 321 PANTHER PTHR33607 47 231 2.0E-30 T 22-04-2016 PP4_RS13955 b8f257ebf484f27569f8b0848c534dcf 321 Gene3D G3DSA:3.40.10.10 274 321 1.8E-5 T 22-04-2016 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 PP4_RS13955 b8f257ebf484f27569f8b0848c534dcf 321 SUPERFAMILY SSF54060 23 233 1.29E-79 T 22-04-2016 PP4_RS13955 b8f257ebf484f27569f8b0848c534dcf 321 SUPERFAMILY SSF57884 274 321 6.15E-5 T 22-04-2016 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 PP4_RS13955 b8f257ebf484f27569f8b0848c534dcf 321 Pfam PF04231 Endonuclease I 25 232 1.8E-50 T 22-04-2016 IPR007346 Endonuclease I GO:0004518 PP4_RS05575 104f2f0b97e3e3d836e95622f396e6ae 357 PANTHER PTHR10799:SF750 220 343 3.5E-32 T 22-04-2016 PP4_RS05575 104f2f0b97e3e3d836e95622f396e6ae 357 Gene3D G3DSA:3.30.70.270 186 346 3.2E-48 T 22-04-2016 PP4_RS05575 104f2f0b97e3e3d836e95622f396e6ae 357 SUPERFAMILY SSF55073 189 344 3.61E-44 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS05575 104f2f0b97e3e3d836e95622f396e6ae 357 Pfam PF05230 MASE2 domain 14 101 5.1E-33 T 22-04-2016 IPR007894 MASE2 PP4_RS05575 104f2f0b97e3e3d836e95622f396e6ae 357 PANTHER PTHR10799 220 343 3.5E-32 T 22-04-2016 PP4_RS05575 104f2f0b97e3e3d836e95622f396e6ae 357 Pfam PF00990 Diguanylate cyclase, GGDEF domain 185 340 4.1E-41 T 22-04-2016 IPR000160 GGDEF domain PP4_RS05575 104f2f0b97e3e3d836e95622f396e6ae 357 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 181 343 2.6E-48 T 22-04-2016 IPR000160 GGDEF domain PP4_RS05575 104f2f0b97e3e3d836e95622f396e6ae 357 SMART SM00267 173 344 6.5E-49 T 22-04-2016 IPR000160 GGDEF domain PP4_RS21075 12becc229b4aaa082b43d1e13e9a8734 115 TIGRFAM TIGR01617 arsC_related: transcriptional regulator, Spx/MgsR family 4 111 1.3E-28 T 22-04-2016 IPR006504 Transcriptional regulator Spx/MgsR PP4_RS21075 12becc229b4aaa082b43d1e13e9a8734 115 SUPERFAMILY SSF52833 3 114 3.94E-34 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS21075 12becc229b4aaa082b43d1e13e9a8734 115 Pfam PF03960 ArsC family 8 112 5.8E-17 T 22-04-2016 IPR006660 Arsenate reductase-like PP4_RS21075 12becc229b4aaa082b43d1e13e9a8734 115 Gene3D G3DSA:3.40.30.10 3 114 8.6E-43 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS21075 12becc229b4aaa082b43d1e13e9a8734 115 PANTHER PTHR30041:SF3 1 114 4.1E-43 T 22-04-2016 PP4_RS21075 12becc229b4aaa082b43d1e13e9a8734 115 PANTHER PTHR30041 1 114 4.1E-43 T 22-04-2016 PP4_RS06790 f19b8c83114d5bb4b8f4cf962418278e 519 SUPERFAMILY SSF52540 207 449 1.77E-60 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS06790 f19b8c83114d5bb4b8f4cf962418278e 519 PANTHER PTHR32071:SF3 8 517 2.3E-186 T 22-04-2016 PP4_RS06790 f19b8c83114d5bb4b8f4cf962418278e 519 SMART SM00382 227 372 5.1E-7 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS06790 f19b8c83114d5bb4b8f4cf962418278e 519 Gene3D G3DSA:3.40.50.300 204 380 2.6E-50 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS06790 f19b8c83114d5bb4b8f4cf962418278e 519 SUPERFAMILY SSF55785 84 145 4.38E-9 T 22-04-2016 IPR000014 PAS domain PP4_RS06790 f19b8c83114d5bb4b8f4cf962418278e 519 Pfam PF13188 PAS domain 86 137 3.2E-5 T 22-04-2016 IPR000014 PAS domain PP4_RS06790 f19b8c83114d5bb4b8f4cf962418278e 519 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 421 430 - T 22-04-2016 IPR025944 Sigma-54 interaction domain, conserved site PP4_RS06790 f19b8c83114d5bb4b8f4cf962418278e 519 Gene3D G3DSA:3.30.70.260 2 72 5.2E-11 T 22-04-2016 PP4_RS06790 f19b8c83114d5bb4b8f4cf962418278e 519 SMART SM00091 82 148 6.4E-7 T 22-04-2016 IPR000014 PAS domain PP4_RS06790 f19b8c83114d5bb4b8f4cf962418278e 519 Gene3D G3DSA:1.10.8.60 387 450 1.5E-19 T 22-04-2016 PP4_RS06790 f19b8c83114d5bb4b8f4cf962418278e 519 PANTHER PTHR32071 8 517 2.3E-186 T 22-04-2016 PP4_RS06790 f19b8c83114d5bb4b8f4cf962418278e 519 Pfam PF01842 ACT domain 3 39 1.9E-6 T 22-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 PP4_RS06790 f19b8c83114d5bb4b8f4cf962418278e 519 Gene3D G3DSA:3.30.450.20 80 140 2.4E-7 T 22-04-2016 PP4_RS06790 f19b8c83114d5bb4b8f4cf962418278e 519 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 231 244 - T 22-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 PP4_RS06790 f19b8c83114d5bb4b8f4cf962418278e 519 Pfam PF00158 Sigma-54 interaction domain 208 374 8.6E-58 T 22-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 PP4_RS06790 f19b8c83114d5bb4b8f4cf962418278e 519 Gene3D G3DSA:1.10.10.60 459 516 5.2E-21 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS06790 f19b8c83114d5bb4b8f4cf962418278e 519 TIGRFAM TIGR04381 HTH_TypR: TyrR family helix-turn-helix domain 469 516 2.1E-19 T 22-04-2016 IPR030828 TyrR family, helix-turn-helix domain GO:0003677 PP4_RS06790 f19b8c83114d5bb4b8f4cf962418278e 519 SUPERFAMILY SSF55021 2 72 1.08E-8 T 22-04-2016 PP4_RS06790 f19b8c83114d5bb4b8f4cf962418278e 519 SUPERFAMILY SSF46689 461 515 3.94E-7 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS10945 c8595979fc517433e24422ce072c648c 290 Gene3D G3DSA:3.20.20.150 22 283 1.5E-37 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PP4_RS10945 c8595979fc517433e24422ce072c648c 290 SUPERFAMILY SSF51658 21 285 2.05E-45 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PP4_RS10945 c8595979fc517433e24422ce072c648c 290 PANTHER PTHR12110:SF26 24 248 2.3E-21 T 22-04-2016 PP4_RS10945 c8595979fc517433e24422ce072c648c 290 Pfam PF01261 Xylose isomerase-like TIM barrel 54 237 1.8E-13 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PP4_RS10945 c8595979fc517433e24422ce072c648c 290 PANTHER PTHR12110 24 248 2.3E-21 T 22-04-2016 PP4_RS21600 677de91897c468de86e1ff67b7a91da7 459 PANTHER PTHR30008:SF0 8 458 2.2E-175 T 22-04-2016 PP4_RS21600 677de91897c468de86e1ff67b7a91da7 459 Pfam PF02601 Exonuclease VII, large subunit 132 443 4.6E-100 T 22-04-2016 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 PP4_RS21600 677de91897c468de86e1ff67b7a91da7 459 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 17 361 5.1E-130 T 22-04-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 PP4_RS21600 677de91897c468de86e1ff67b7a91da7 459 PANTHER PTHR30008 8 458 2.2E-175 T 22-04-2016 PP4_RS21600 677de91897c468de86e1ff67b7a91da7 459 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 13 446 31.178 T 22-04-2016 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 PP4_RS21600 677de91897c468de86e1ff67b7a91da7 459 Pfam PF13742 OB-fold nucleic acid binding domain 16 108 4.1E-28 T 22-04-2016 IPR025824 OB-fold nucleic acid binding domain GO:0003676 PP4_RS03910 c42b89f0d4af8c3c358265ca790b7643 164 Gene3D G3DSA:1.10.10.10 105 157 3.4E-11 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS03910 c42b89f0d4af8c3c358265ca790b7643 164 Pfam PF08281 Sigma-70, region 4 108 160 7.1E-14 T 22-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS03910 c42b89f0d4af8c3c358265ca790b7643 164 PANTHER PTHR30173 9 160 4.2E-35 T 22-04-2016 PP4_RS03910 c42b89f0d4af8c3c358265ca790b7643 164 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 10 156 5.4E-17 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS03910 c42b89f0d4af8c3c358265ca790b7643 164 Gene3D G3DSA:1.10.1740.10 9 77 3.3E-11 T 22-04-2016 PP4_RS03910 c42b89f0d4af8c3c358265ca790b7643 164 Pfam PF04542 Sigma-70 region 2 12 76 2.5E-15 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS03910 c42b89f0d4af8c3c358265ca790b7643 164 SUPERFAMILY SSF88659 102 160 4.36E-12 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS03910 c42b89f0d4af8c3c358265ca790b7643 164 SUPERFAMILY SSF88946 10 94 3.69E-13 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS03910 c42b89f0d4af8c3c358265ca790b7643 164 PANTHER PTHR30173:SF9 9 160 4.2E-35 T 22-04-2016 PP4_RS10060 0b57e71400914dec0783533e97a4aa93 435 PANTHER PTHR30570:SF1 71 336 2.6E-56 T 22-04-2016 PP4_RS10060 0b57e71400914dec0783533e97a4aa93 435 Gene3D G3DSA:3.40.190.10 131 263 2.3E-32 T 22-04-2016 PP4_RS10060 0b57e71400914dec0783533e97a4aa93 435 SUPERFAMILY SSF53850 74 345 5.43E-60 T 22-04-2016 PP4_RS10060 0b57e71400914dec0783533e97a4aa93 435 Pfam PF00691 OmpA family 334 428 7.1E-10 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS10060 0b57e71400914dec0783533e97a4aa93 435 Gene3D G3DSA:3.30.1330.60 322 434 1.8E-20 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS10060 0b57e71400914dec0783533e97a4aa93 435 SUPERFAMILY SSF103088 312 434 2.22E-19 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS10060 0b57e71400914dec0783533e97a4aa93 435 PANTHER PTHR30570 71 336 2.6E-56 T 22-04-2016 PP4_RS10060 0b57e71400914dec0783533e97a4aa93 435 Pfam PF12849 PBP superfamily domain 68 286 7.0E-29 T 22-04-2016 IPR024370 PBP domain PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 Gene3D G3DSA:3.40.50.980 1701 1864 2.0E-38 T 22-04-2016 PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 Gene3D G3DSA:3.40.50.980 651 807 1.7E-34 T 22-04-2016 PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 SUPERFAMILY SSF52777 52 230 5.34E-52 T 22-04-2016 PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 PANTHER PTHR24095:SF173 52 2039 0.0 T 22-04-2016 PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 SMART SM00823 Phosphopantetheine attachment site 2065 2134 2.4E-5 T 22-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 SMART SM00823 Phosphopantetheine attachment site 1002 1071 0.0022 T 22-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1026 1041 - T 22-04-2016 IPR006162 Phosphopantetheine attachment site PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 ProSitePatterns PS00012 Phosphopantetheine attachment site. 2089 2104 - T 22-04-2016 IPR006162 Phosphopantetheine attachment site PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 Pfam PF13745 HxxPF-repeated domain 371 462 3.1E-23 T 22-04-2016 PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 Pfam PF13745 HxxPF-repeated domain 1403 1496 1.4E-20 T 22-04-2016 PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 SUPERFAMILY SSF56801 1509 2078 4.32E-157 T 22-04-2016 PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 PANTHER PTHR24095 52 2039 0.0 T 22-04-2016 PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 Gene3D G3DSA:1.10.1200.10 1007 1072 2.1E-27 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 Gene3D G3DSA:1.10.1200.10 2069 2133 1.7E-28 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 Pfam PF13193 AMP-binding enzyme C-terminal domain 1964 2039 2.3E-12 T 22-04-2016 IPR025110 AMP-binding enzyme C-terminal domain PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 Gene3D G3DSA:2.30.38.10 1865 1945 7.0E-22 T 22-04-2016 PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 Gene3D G3DSA:2.30.38.10 808 879 2.9E-20 T 22-04-2016 PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 SUPERFAMILY SSF52777 1090 1262 3.78E-48 T 22-04-2016 PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 SUPERFAMILY SSF52777 236 479 2.59E-55 T 22-04-2016 PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 Gene3D G3DSA:3.40.50.980 505 650 3.3E-41 T 22-04-2016 PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 1570 1980 2.7E-125 T 22-04-2016 IPR010071 Amino acid adenylation domain PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 531 917 1.5E-112 T 22-04-2016 IPR010071 Amino acid adenylation domain PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 Gene3D G3DSA:3.30.300.30 889 1006 6.4E-32 T 22-04-2016 PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 Gene3D G3DSA:3.30.300.30 1951 2068 8.0E-42 T 22-04-2016 PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 SUPERFAMILY SSF47336 994 1068 2.75E-19 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 SUPERFAMILY SSF56801 503 1015 1.07E-125 T 22-04-2016 PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 Gene3D G3DSA:3.40.50.980 1544 1700 7.3E-51 T 22-04-2016 PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 SUPERFAMILY SSF47336 2057 2131 8.9E-20 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 SUPERFAMILY SSF52777 1268 1536 9.67E-59 T 22-04-2016 PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 Pfam PF00668 Condensation domain 52 349 1.8E-75 T 22-04-2016 IPR001242 Condensation domain PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 Pfam PF00668 Condensation domain 1084 1381 6.2E-73 T 22-04-2016 IPR001242 Condensation domain PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 Pfam PF00550 Phosphopantetheine attachment site 2066 2130 2.9E-13 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 Pfam PF00550 Phosphopantetheine attachment site 1004 1067 9.1E-14 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 ProSitePatterns PS00455 Putative AMP-binding domain signature. 1692 1703 - T 22-04-2016 IPR020845 AMP-binding, conserved site PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 ProSitePatterns PS00455 Putative AMP-binding domain signature. 645 656 - T 22-04-2016 IPR020845 AMP-binding, conserved site PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 Pfam PF00501 AMP-binding enzyme 1549 1956 1.3E-90 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PP4_RS06330 929f4eded84c11e04204019320a62ab3 2155 Pfam PF00501 AMP-binding enzyme 510 893 3.1E-79 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PP4_RS02810 4665551927f9886c7e6d29593f668676 290 SUPERFAMILY SSF48452 126 177 4.02E-7 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS02810 4665551927f9886c7e6d29593f668676 290 SUPERFAMILY SSF48452 204 263 4.02E-7 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS02810 4665551927f9886c7e6d29593f668676 290 PRINTS PR00421 Thioredoxin family signature 29 37 1.5E-7 T 22-04-2016 PP4_RS02810 4665551927f9886c7e6d29593f668676 290 PRINTS PR00421 Thioredoxin family signature 37 46 1.5E-7 T 22-04-2016 PP4_RS02810 4665551927f9886c7e6d29593f668676 290 PRINTS PR00421 Thioredoxin family signature 77 88 1.5E-7 T 22-04-2016 PP4_RS02810 4665551927f9886c7e6d29593f668676 290 SUPERFAMILY SSF52833 8 116 1.17E-33 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS02810 4665551927f9886c7e6d29593f668676 290 Gene3D G3DSA:1.25.40.10 204 290 5.5E-29 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS02810 4665551927f9886c7e6d29593f668676 290 TIGRFAM TIGR01068 thioredoxin: thioredoxin 13 111 9.8E-30 T 22-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 PP4_RS02810 4665551927f9886c7e6d29593f668676 290 Gene3D G3DSA:3.40.30.10 8 113 2.5E-32 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS02810 4665551927f9886c7e6d29593f668676 290 Pfam PF00085 Thioredoxin 11 110 7.6E-27 T 22-04-2016 IPR013766 Thioredoxin domain GO:0045454 PP4_RS02810 4665551927f9886c7e6d29593f668676 290 Pfam PF14559 Tetratricopeptide repeat 130 196 4.1E-10 T 22-04-2016 PP4_RS02810 4665551927f9886c7e6d29593f668676 290 ProSitePatterns PS00194 Thioredoxin family active site. 30 48 - T 22-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 PP4_RS02810 4665551927f9886c7e6d29593f668676 290 Gene3D G3DSA:1.25.40.10 123 202 4.5E-12 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS02810 4665551927f9886c7e6d29593f668676 290 Pfam PF14561 Tetratricopeptide repeat 201 290 2.3E-27 T 22-04-2016 PP4_RS02810 4665551927f9886c7e6d29593f668676 290 PANTHER PTHR10438 12 115 4.8E-35 T 22-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 PP4_RS02810 4665551927f9886c7e6d29593f668676 290 PANTHER PTHR10438 271 276 4.8E-35 T 22-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 PP4_RS05725 18549d3254bb5defc1de3d6ce90e72db 263 SUPERFAMILY SSF53474 22 262 3.87E-45 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS05725 18549d3254bb5defc1de3d6ce90e72db 263 Pfam PF01738 Dienelactone hydrolase family 37 261 8.3E-50 T 22-04-2016 IPR002925 Dienelactone hydrolase GO:0016787 PP4_RS05725 18549d3254bb5defc1de3d6ce90e72db 263 PANTHER PTHR22946 17 263 9.1E-70 T 22-04-2016 PP4_RS05725 18549d3254bb5defc1de3d6ce90e72db 263 PANTHER PTHR22946:SF0 17 263 9.1E-70 T 22-04-2016 PP4_RS05725 18549d3254bb5defc1de3d6ce90e72db 263 Gene3D G3DSA:3.40.50.1820 21 260 1.0E-49 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS20205 34da8508d0e804035cfbf2104f65c1d5 818 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 370 534 4.9E-43 T 22-04-2016 IPR000160 GGDEF domain PP4_RS20205 34da8508d0e804035cfbf2104f65c1d5 818 SMART SM00267 363 535 2.5E-63 T 22-04-2016 IPR000160 GGDEF domain PP4_RS20205 34da8508d0e804035cfbf2104f65c1d5 818 SUPERFAMILY SSF55785 232 361 8.38E-17 T 22-04-2016 IPR000014 PAS domain PP4_RS20205 34da8508d0e804035cfbf2104f65c1d5 818 Gene3D G3DSA:3.30.450.20 239 361 4.6E-19 T 22-04-2016 PP4_RS20205 34da8508d0e804035cfbf2104f65c1d5 818 Pfam PF00989 PAS fold 248 360 1.4E-11 T 22-04-2016 IPR013767 PAS fold GO:0006355 PP4_RS20205 34da8508d0e804035cfbf2104f65c1d5 818 SMART SM00091 245 311 4.1E-6 T 22-04-2016 IPR000014 PAS domain PP4_RS20205 34da8508d0e804035cfbf2104f65c1d5 818 Gene3D G3DSA:3.20.20.450 551 792 1.5E-75 T 22-04-2016 IPR001633 EAL domain PP4_RS20205 34da8508d0e804035cfbf2104f65c1d5 818 Gene3D G3DSA:3.30.70.270 375 538 1.3E-54 T 22-04-2016 PP4_RS20205 34da8508d0e804035cfbf2104f65c1d5 818 Pfam PF00563 EAL domain 553 791 5.3E-64 T 22-04-2016 IPR001633 EAL domain PP4_RS20205 34da8508d0e804035cfbf2104f65c1d5 818 Pfam PF00990 Diguanylate cyclase, GGDEF domain 374 531 1.5E-44 T 22-04-2016 IPR000160 GGDEF domain PP4_RS20205 34da8508d0e804035cfbf2104f65c1d5 818 SMART SM00052 547 796 7.2E-62 T 22-04-2016 IPR001633 EAL domain PP4_RS20205 34da8508d0e804035cfbf2104f65c1d5 818 PANTHER PTHR33121 534 792 1.6E-58 T 22-04-2016 PP4_RS20205 34da8508d0e804035cfbf2104f65c1d5 818 SUPERFAMILY SSF141868 553 793 3.14E-70 T 22-04-2016 IPR001633 EAL domain PP4_RS20205 34da8508d0e804035cfbf2104f65c1d5 818 PANTHER PTHR33121:SF10 534 792 1.6E-58 T 22-04-2016 PP4_RS20205 34da8508d0e804035cfbf2104f65c1d5 818 SUPERFAMILY SSF55073 379 536 4.94E-49 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS20205 34da8508d0e804035cfbf2104f65c1d5 818 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 243 366 3.1E-11 T 22-04-2016 IPR000014 PAS domain PP4_RS23830 c8d199f4580ece70a3a69a7d3877d7df 622 Gene3D G3DSA:3.40.50.300 206 418 6.7E-13 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23830 c8d199f4580ece70a3a69a7d3877d7df 622 SUPERFAMILY SSF52540 236 382 4.21E-15 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23830 c8d199f4580ece70a3a69a7d3877d7df 622 Pfam PF09848 Uncharacterized conserved protein (DUF2075) 264 605 2.5E-97 T 22-04-2016 IPR018647 Domain of unknown function DUF2075 PP4_RS25865 07fda5de5d18442ae374d9fb3c7e53b1 144 PRINTS PR00421 Thioredoxin family signature 67 76 1.6E-7 T 22-04-2016 PP4_RS25865 07fda5de5d18442ae374d9fb3c7e53b1 144 PRINTS PR00421 Thioredoxin family signature 107 118 1.6E-7 T 22-04-2016 PP4_RS25865 07fda5de5d18442ae374d9fb3c7e53b1 144 PRINTS PR00421 Thioredoxin family signature 59 67 1.6E-7 T 22-04-2016 PP4_RS25865 07fda5de5d18442ae374d9fb3c7e53b1 144 Pfam PF00085 Thioredoxin 43 141 8.9E-25 T 22-04-2016 IPR013766 Thioredoxin domain GO:0045454 PP4_RS25865 07fda5de5d18442ae374d9fb3c7e53b1 144 PANTHER PTHR10438 21 144 3.2E-33 T 22-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 PP4_RS25865 07fda5de5d18442ae374d9fb3c7e53b1 144 ProSitePatterns PS00194 Thioredoxin family active site. 60 78 - T 22-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 PP4_RS25865 07fda5de5d18442ae374d9fb3c7e53b1 144 Gene3D G3DSA:3.40.30.10 42 142 1.4E-29 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS25865 07fda5de5d18442ae374d9fb3c7e53b1 144 PANTHER PTHR10438:SF281 21 144 3.2E-33 T 22-04-2016 PP4_RS25865 07fda5de5d18442ae374d9fb3c7e53b1 144 SUPERFAMILY SSF52833 28 141 9.55E-33 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS16850 e2c3d1f0adc3e6eb682a8f4b99c80b5f 801 Gene3D G3DSA:2.170.130.10 125 253 3.8E-33 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS16850 e2c3d1f0adc3e6eb682a8f4b99c80b5f 801 PANTHER PTHR32552:SF37 135 801 1.4E-220 T 22-04-2016 PP4_RS16850 e2c3d1f0adc3e6eb682a8f4b99c80b5f 801 Pfam PF07660 Secretin and TonB N terminus short domain 52 99 6.2E-9 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS16850 e2c3d1f0adc3e6eb682a8f4b99c80b5f 801 SMART SM00965 50 100 2.2E-11 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS16850 e2c3d1f0adc3e6eb682a8f4b99c80b5f 801 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 784 801 - T 22-04-2016 IPR010917 TonB-dependent receptor, conserved site PP4_RS16850 e2c3d1f0adc3e6eb682a8f4b99c80b5f 801 Gene3D G3DSA:2.40.170.20 260 801 3.8E-128 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS16850 e2c3d1f0adc3e6eb682a8f4b99c80b5f 801 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 145 801 7.0E-109 T 22-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 PP4_RS16850 e2c3d1f0adc3e6eb682a8f4b99c80b5f 801 Pfam PF00593 TonB dependent receptor 560 799 1.4E-29 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS16850 e2c3d1f0adc3e6eb682a8f4b99c80b5f 801 SUPERFAMILY SSF56935 136 801 2.98E-123 T 22-04-2016 PP4_RS16850 e2c3d1f0adc3e6eb682a8f4b99c80b5f 801 Pfam PF07715 TonB-dependent Receptor Plug Domain 143 244 5.3E-15 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS16850 e2c3d1f0adc3e6eb682a8f4b99c80b5f 801 PANTHER PTHR32552 135 801 1.4E-220 T 22-04-2016 PP4_RS27345 48981705feb4a5c0d83d7ce5a4820d88 466 PANTHER PTHR22912:SF151 1 459 4.2E-250 T 22-04-2016 PP4_RS27345 48981705feb4a5c0d83d7ce5a4820d88 466 SUPERFAMILY SSF51905 1 368 1.08E-64 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS27345 48981705feb4a5c0d83d7ce5a4820d88 466 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 328 2.6E-75 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS27345 48981705feb4a5c0d83d7ce5a4820d88 466 Gene3D G3DSA:3.50.50.60 151 262 1.2E-39 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS27345 48981705feb4a5c0d83d7ce5a4820d88 466 PIRSF PIRSF000350 1 463 1.3E-93 T 22-04-2016 PP4_RS27345 48981705feb4a5c0d83d7ce5a4820d88 466 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 22-04-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 PP4_RS27345 48981705feb4a5c0d83d7ce5a4820d88 466 Gene3D G3DSA:3.50.50.60 2 150 2.7E-43 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS27345 48981705feb4a5c0d83d7ce5a4820d88 466 Gene3D G3DSA:3.50.50.60 263 337 8.0E-22 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS27345 48981705feb4a5c0d83d7ce5a4820d88 466 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 3 464 1.4E-165 T 22-04-2016 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084 PP4_RS27345 48981705feb4a5c0d83d7ce5a4820d88 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 265 281 9.9E-38 T 22-04-2016 PP4_RS27345 48981705feb4a5c0d83d7ce5a4820d88 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 137 155 9.9E-38 T 22-04-2016 PP4_RS27345 48981705feb4a5c0d83d7ce5a4820d88 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 293 315 9.9E-38 T 22-04-2016 PP4_RS27345 48981705feb4a5c0d83d7ce5a4820d88 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 9.9E-38 T 22-04-2016 PP4_RS27345 48981705feb4a5c0d83d7ce5a4820d88 466 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 176 194 9.9E-38 T 22-04-2016 PP4_RS27345 48981705feb4a5c0d83d7ce5a4820d88 466 Gene3D G3DSA:3.30.390.30 338 462 2.2E-50 T 22-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 PP4_RS27345 48981705feb4a5c0d83d7ce5a4820d88 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 2.7E-79 T 22-04-2016 PP4_RS27345 48981705feb4a5c0d83d7ce5a4820d88 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 430 450 2.7E-79 T 22-04-2016 PP4_RS27345 48981705feb4a5c0d83d7ce5a4820d88 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 343 364 2.7E-79 T 22-04-2016 PP4_RS27345 48981705feb4a5c0d83d7ce5a4820d88 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 308 315 2.7E-79 T 22-04-2016 PP4_RS27345 48981705feb4a5c0d83d7ce5a4820d88 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 140 149 2.7E-79 T 22-04-2016 PP4_RS27345 48981705feb4a5c0d83d7ce5a4820d88 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 408 423 2.7E-79 T 22-04-2016 PP4_RS27345 48981705feb4a5c0d83d7ce5a4820d88 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 266 280 2.7E-79 T 22-04-2016 PP4_RS27345 48981705feb4a5c0d83d7ce5a4820d88 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 176 201 2.7E-79 T 22-04-2016 PP4_RS27345 48981705feb4a5c0d83d7ce5a4820d88 466 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 2.7E-79 T 22-04-2016 PP4_RS27345 48981705feb4a5c0d83d7ce5a4820d88 466 PANTHER PTHR22912 1 459 4.2E-250 T 22-04-2016 PP4_RS27345 48981705feb4a5c0d83d7ce5a4820d88 466 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 347 455 1.4E-40 T 22-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 PP4_RS27345 48981705feb4a5c0d83d7ce5a4820d88 466 SUPERFAMILY SSF55424 343 463 3.61E-42 T 22-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 PP4_RS17855 2a1c6499d0d0e81a84204c209ae8599a 104 SUPERFAMILY SSF47413 46 88 5.04E-10 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS17855 2a1c6499d0d0e81a84204c209ae8599a 104 Gene3D G3DSA:1.10.260.40 46 92 5.9E-17 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS17855 2a1c6499d0d0e81a84204c209ae8599a 104 SMART SM00530 43 101 5.0E-4 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS17855 2a1c6499d0d0e81a84204c209ae8599a 104 PANTHER PTHR36511 12 101 2.3E-16 T 22-04-2016 PP4_RS17855 2a1c6499d0d0e81a84204c209ae8599a 104 Pfam PF01381 Helix-turn-helix 46 81 6.0E-8 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS17500 dbe4b7483425379260fc23b9e30dfb2c 296 Gene3D G3DSA:3.20.20.60 7 289 6.8E-99 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PP4_RS17500 dbe4b7483425379260fc23b9e30dfb2c 296 Hamap MF_01939 2-methylisocitrate lyase [prpB]. 5 293 50.057 T 22-04-2016 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747|UniPathway: UPA00946 PP4_RS17500 dbe4b7483425379260fc23b9e30dfb2c 296 PANTHER PTHR21631 7 295 7.1E-158 T 22-04-2016 PP4_RS17500 dbe4b7483425379260fc23b9e30dfb2c 296 ProSitePatterns PS00161 Isocitrate lyase signature. 122 127 - T 22-04-2016 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824|GO:0008152 PP4_RS17500 dbe4b7483425379260fc23b9e30dfb2c 296 TIGRFAM TIGR02317 prpB: methylisocitrate lyase 8 292 2.6E-132 T 22-04-2016 IPR012695 2-methylisocitrate lyase GO:0019629|GO:0046421 KEGG: 00640+4.1.3.30|MetaCyc: PWY-5747|UniPathway: UPA00946 PP4_RS17500 dbe4b7483425379260fc23b9e30dfb2c 296 SUPERFAMILY SSF51621 5 290 1.21E-97 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PP4_RS17500 dbe4b7483425379260fc23b9e30dfb2c 296 PANTHER PTHR21631:SF4 7 295 7.1E-158 T 22-04-2016 PP4_RS17500 dbe4b7483425379260fc23b9e30dfb2c 296 Pfam PF13714 Phosphoenolpyruvate phosphomutase 18 254 1.7E-48 T 22-04-2016 PP4_RS16205 9f9f31936327e69882b0fc59b1750356 760 Pfam PF03170 Bacterial cellulose synthase subunit 48 662 2.5E-207 T 22-04-2016 IPR018513 Cellulose synthase BcsB, bacterial GO:0006011|GO:0016020 UniPathway: UPA00694 PP4_RS16205 9f9f31936327e69882b0fc59b1750356 760 PANTHER PTHR39083 464 760 1.5E-114 T 22-04-2016 PP4_RS16205 9f9f31936327e69882b0fc59b1750356 760 PANTHER PTHR39083 5 444 1.5E-114 T 22-04-2016 PP4_RS16205 9f9f31936327e69882b0fc59b1750356 760 PRINTS PR01440 Cellulose synthase subunit B signature 375 396 8.4E-25 T 22-04-2016 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 UniPathway: UPA00694 PP4_RS16205 9f9f31936327e69882b0fc59b1750356 760 PRINTS PR01440 Cellulose synthase subunit B signature 203 226 8.4E-25 T 22-04-2016 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 UniPathway: UPA00694 PP4_RS16205 9f9f31936327e69882b0fc59b1750356 760 PRINTS PR01440 Cellulose synthase subunit B signature 511 530 8.4E-25 T 22-04-2016 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 UniPathway: UPA00694 PP4_RS16205 9f9f31936327e69882b0fc59b1750356 760 PRINTS PR01440 Cellulose synthase subunit B signature 71 92 8.4E-25 T 22-04-2016 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 UniPathway: UPA00694 PP4_RS16205 9f9f31936327e69882b0fc59b1750356 760 PRINTS PR01440 Cellulose synthase subunit B signature 161 182 8.4E-25 T 22-04-2016 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 UniPathway: UPA00694 PP4_RS16205 9f9f31936327e69882b0fc59b1750356 760 PRINTS PR01440 Cellulose synthase subunit B signature 548 568 8.4E-25 T 22-04-2016 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 UniPathway: UPA00694 PP4_RS16205 9f9f31936327e69882b0fc59b1750356 760 PRINTS PR01440 Cellulose synthase subunit B signature 701 721 8.4E-25 T 22-04-2016 IPR003920 Cellulose synthase, subunit B GO:0006011|GO:0016020 UniPathway: UPA00694 PP4_RS16205 9f9f31936327e69882b0fc59b1750356 760 PANTHER PTHR39083:SF1 464 760 1.5E-114 T 22-04-2016 PP4_RS16205 9f9f31936327e69882b0fc59b1750356 760 PANTHER PTHR39083:SF1 5 444 1.5E-114 T 22-04-2016 PP4_RS25245 2901347c3a282bbb98c92f2c148f5f72 278 Pfam PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ 32 275 2.2E-95 T 22-04-2016 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 PP4_RS25245 2901347c3a282bbb98c92f2c148f5f72 278 PANTHER PTHR37426:SF1 1 278 4.1E-136 T 22-04-2016 PP4_RS25245 2901347c3a282bbb98c92f2c148f5f72 278 PANTHER PTHR37426 1 278 4.1E-136 T 22-04-2016 PP4_RS25245 2901347c3a282bbb98c92f2c148f5f72 278 Gene3D G3DSA:3.40.50.150 1 277 8.6E-104 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS25245 2901347c3a282bbb98c92f2c148f5f72 278 Hamap MF_00934 Ribosomal RNA large subunit methyltransferase J [rlmJ]. 1 265 38.68 T 22-04-2016 IPR007473 Ribosomal RNA large subunit methyltransferase J GO:0008649|GO:0070475 PP4_RS25245 2901347c3a282bbb98c92f2c148f5f72 278 SUPERFAMILY SSF53335 8 275 1.22E-87 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS11475 09c97068b546ccfcc0288cad9a9341bc 422 PANTHER PTHR37944:SF1 7 422 5.3E-67 T 22-04-2016 PP4_RS11475 09c97068b546ccfcc0288cad9a9341bc 422 Pfam PF04966 Carbohydrate-selective porin, OprB family 68 422 2.9E-87 T 22-04-2016 IPR007049 Carbohydrate-selective porin OprB GO:0005215|GO:0006810|GO:0016021 PP4_RS11475 09c97068b546ccfcc0288cad9a9341bc 422 PANTHER PTHR37944 7 422 5.3E-67 T 22-04-2016 PP4_RS18685 c41e0d4d395a032e26e715ff20b3f1a0 391 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 10 389 3.4E-134 T 22-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 PP4_RS18685 c41e0d4d395a032e26e715ff20b3f1a0 391 Gene3D G3DSA:3.40.47.10 7 130 7.5E-62 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS18685 c41e0d4d395a032e26e715ff20b3f1a0 391 Gene3D G3DSA:3.40.47.10 188 271 7.5E-62 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS18685 c41e0d4d395a032e26e715ff20b3f1a0 391 Hamap MF_01620 3-ketoacyl-CoA thiolase [fadA]. 5 391 59.434 T 22-04-2016 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726|UniPathway: UPA00659 PP4_RS18685 c41e0d4d395a032e26e715ff20b3f1a0 391 SUPERFAMILY SSF53901 4 260 1.8E-77 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS18685 c41e0d4d395a032e26e715ff20b3f1a0 391 Gene3D G3DSA:3.40.47.10 272 390 1.6E-56 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS18685 c41e0d4d395a032e26e715ff20b3f1a0 391 Gene3D G3DSA:3.40.47.10 143 187 1.6E-56 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS18685 c41e0d4d395a032e26e715ff20b3f1a0 391 Pfam PF02803 Thiolase, C-terminal domain 266 390 1.5E-48 T 22-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 PP4_RS18685 c41e0d4d395a032e26e715ff20b3f1a0 391 TIGRFAM TIGR02445 fadA: acetyl-CoA C-acyltransferase FadA 7 391 4.9E-232 T 22-04-2016 IPR012805 Acetyl-CoA C-acyltransferase FadA GO:0003988|GO:0005737|GO:0006631|GO:0016042 KEGG: 00062+2.3.1.16|KEGG: 00071+2.3.1.16|KEGG: 00280+2.3.1.16|KEGG: 00281+2.3.1.16|KEGG: 00362+2.3.1.16|KEGG: 00592+2.3.1.16|KEGG: 00642+2.3.1.16|MetaCyc: PWY-5136|MetaCyc: PWY-6435|MetaCyc: PWY-6863|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-6948|MetaCyc: PWY-7094|MetaCyc: PWY-7288|MetaCyc: PWY-7337|MetaCyc: PWY-7338|MetaCyc: PWY-7339|MetaCyc: PWY-7340|MetaCyc: PWY-735|MetaCyc: PWY-7606|MetaCyc: PWY-7654|MetaCyc: PWY-7726|UniPathway: UPA00659 PP4_RS18685 c41e0d4d395a032e26e715ff20b3f1a0 391 PANTHER PTHR18919 3 391 3.1E-195 T 22-04-2016 PP4_RS18685 c41e0d4d395a032e26e715ff20b3f1a0 391 PANTHER PTHR18919:SF69 3 391 3.1E-195 T 22-04-2016 PP4_RS18685 c41e0d4d395a032e26e715ff20b3f1a0 391 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 91 109 - T 22-04-2016 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Reactome: REACT_22258 PP4_RS18685 c41e0d4d395a032e26e715ff20b3f1a0 391 ProSitePatterns PS00737 Thiolases signature 2. 337 353 - T 22-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 PP4_RS18685 c41e0d4d395a032e26e715ff20b3f1a0 391 PIRSF PIRSF000429 2 391 1.4E-133 T 22-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 PP4_RS18685 c41e0d4d395a032e26e715ff20b3f1a0 391 Pfam PF00108 Thiolase, N-terminal domain 8 257 3.8E-84 T 22-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 PP4_RS18685 c41e0d4d395a032e26e715ff20b3f1a0 391 SUPERFAMILY SSF53901 266 390 9.19E-43 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS00835 5d7c9ced8ac0879b775d3fe6afdb708c 648 Pfam PF00672 HAMP domain 152 219 6.6E-10 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS00835 5d7c9ced8ac0879b775d3fe6afdb708c 648 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 234 389 1.3E-17 T 22-04-2016 IPR000160 GGDEF domain PP4_RS00835 5d7c9ced8ac0879b775d3fe6afdb708c 648 PANTHER PTHR33121 412 646 3.8E-40 T 22-04-2016 PP4_RS00835 5d7c9ced8ac0879b775d3fe6afdb708c 648 Pfam PF00990 Diguanylate cyclase, GGDEF domain 237 390 2.9E-24 T 22-04-2016 IPR000160 GGDEF domain PP4_RS00835 5d7c9ced8ac0879b775d3fe6afdb708c 648 Gene3D G3DSA:3.20.20.450 412 646 2.8E-49 T 22-04-2016 IPR001633 EAL domain PP4_RS00835 5d7c9ced8ac0879b775d3fe6afdb708c 648 SMART SM00052 409 646 1.2E-20 T 22-04-2016 IPR001633 EAL domain PP4_RS00835 5d7c9ced8ac0879b775d3fe6afdb708c 648 SUPERFAMILY SSF141868 415 647 1.15E-52 T 22-04-2016 IPR001633 EAL domain PP4_RS00835 5d7c9ced8ac0879b775d3fe6afdb708c 648 Pfam PF16448 LapD/MoxY periplasmic domain 23 145 2.2E-39 T 22-04-2016 IPR032244 LapD/MoxY, periplasmic domain PP4_RS00835 5d7c9ced8ac0879b775d3fe6afdb708c 648 Pfam PF00563 EAL domain 415 644 1.4E-58 T 22-04-2016 IPR001633 EAL domain PP4_RS00835 5d7c9ced8ac0879b775d3fe6afdb708c 648 SMART SM00304 171 223 6.9E-6 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS00835 5d7c9ced8ac0879b775d3fe6afdb708c 648 SMART SM00267 225 398 5.2E-24 T 22-04-2016 IPR000160 GGDEF domain PP4_RS00835 5d7c9ced8ac0879b775d3fe6afdb708c 648 SUPERFAMILY SSF55073 241 397 1.49E-22 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS00835 5d7c9ced8ac0879b775d3fe6afdb708c 648 Gene3D G3DSA:3.30.70.270 238 399 2.2E-26 T 22-04-2016 PP4_RS00835 5d7c9ced8ac0879b775d3fe6afdb708c 648 PANTHER PTHR33121:SF10 412 646 3.8E-40 T 22-04-2016 PP4_RS05180 9b9166fff1c404680469de6268e60b6d 283 Pfam PF00230 Major intrinsic protein 6 254 3.3E-67 T 22-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PP4_RS05180 9b9166fff1c404680469de6268e60b6d 283 SUPERFAMILY SSF81338 12 259 2.22E-77 T 22-04-2016 IPR023271 Aquaporin-like PP4_RS05180 9b9166fff1c404680469de6268e60b6d 283 ProSitePatterns PS00221 MIP family signature. 69 77 - T 22-04-2016 IPR022357 Major intrinsic protein, conserved site GO:0005215|GO:0006810|GO:0016020 PP4_RS05180 9b9166fff1c404680469de6268e60b6d 283 Gene3D G3DSA:1.20.1080.10 7 260 4.0E-87 T 22-04-2016 IPR023271 Aquaporin-like PP4_RS05180 9b9166fff1c404680469de6268e60b6d 283 TIGRFAM TIGR00861 MIP: MIP family channel proteins 16 254 1.0E-69 T 22-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PP4_RS05180 9b9166fff1c404680469de6268e60b6d 283 PRINTS PR00783 Major intrinsic protein family signature 187 209 1.7E-51 T 22-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PP4_RS05180 9b9166fff1c404680469de6268e60b6d 283 PRINTS PR00783 Major intrinsic protein family signature 88 107 1.7E-51 T 22-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PP4_RS05180 9b9166fff1c404680469de6268e60b6d 283 PRINTS PR00783 Major intrinsic protein family signature 154 172 1.7E-51 T 22-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PP4_RS05180 9b9166fff1c404680469de6268e60b6d 283 PRINTS PR00783 Major intrinsic protein family signature 51 75 1.7E-51 T 22-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PP4_RS05180 9b9166fff1c404680469de6268e60b6d 283 PRINTS PR00783 Major intrinsic protein family signature 237 257 1.7E-51 T 22-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PP4_RS05180 9b9166fff1c404680469de6268e60b6d 283 PRINTS PR00783 Major intrinsic protein family signature 12 31 1.7E-51 T 22-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PP4_RS05180 9b9166fff1c404680469de6268e60b6d 283 PANTHER PTHR19139:SF100 5 281 8.3E-94 T 22-04-2016 PP4_RS05180 9b9166fff1c404680469de6268e60b6d 283 PANTHER PTHR19139 5 281 8.3E-94 T 22-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PP4_RS14680 8ab475a897bbb4b65d31405e001bc0b6 226 Gene3D G3DSA:3.40.50.2300 1 122 3.7E-33 T 22-04-2016 PP4_RS14680 8ab475a897bbb4b65d31405e001bc0b6 226 SMART SM00448 2 113 3.6E-34 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS14680 8ab475a897bbb4b65d31405e001bc0b6 226 SMART SM00862 147 222 5.2E-26 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS14680 8ab475a897bbb4b65d31405e001bc0b6 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 221 4.4E-26 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS14680 8ab475a897bbb4b65d31405e001bc0b6 226 PANTHER PTHR26402:SF578 2 226 4.9E-83 T 22-04-2016 PP4_RS14680 8ab475a897bbb4b65d31405e001bc0b6 226 Pfam PF00072 Response regulator receiver domain 4 113 7.2E-23 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS14680 8ab475a897bbb4b65d31405e001bc0b6 226 Gene3D G3DSA:1.10.10.10 125 224 4.9E-33 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS14680 8ab475a897bbb4b65d31405e001bc0b6 226 PANTHER PTHR26402 2 226 4.9E-83 T 22-04-2016 PP4_RS14680 8ab475a897bbb4b65d31405e001bc0b6 226 SUPERFAMILY SSF52172 1 181 1.62E-34 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS21955 bac161e797180e8af1cea1525d4201e4 90 Gene3D G3DSA:3.30.1340.10 1 88 3.2E-28 T 22-04-2016 IPR000032 Phosphocarrier HPr protein-like PP4_RS21955 bac161e797180e8af1cea1525d4201e4 90 PANTHER PTHR33705 1 90 5.5E-39 T 22-04-2016 PP4_RS21955 bac161e797180e8af1cea1525d4201e4 90 ProSitePatterns PS00369 PTS HPR domain histidine phosphorylation site signature. 13 20 - T 22-04-2016 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site PP4_RS21955 bac161e797180e8af1cea1525d4201e4 90 TIGRFAM TIGR01003 PTS_HPr_family: phosphocarrier, HPr family 1 83 6.4E-27 T 22-04-2016 IPR000032 Phosphocarrier HPr protein-like PP4_RS21955 bac161e797180e8af1cea1525d4201e4 90 PRINTS PR00107 Phosphocarrier protein signature 54 71 3.0E-11 T 22-04-2016 IPR000032 Phosphocarrier HPr protein-like PP4_RS21955 bac161e797180e8af1cea1525d4201e4 90 PRINTS PR00107 Phosphocarrier protein signature 13 29 3.0E-11 T 22-04-2016 IPR000032 Phosphocarrier HPr protein-like PP4_RS21955 bac161e797180e8af1cea1525d4201e4 90 PRINTS PR00107 Phosphocarrier protein signature 39 54 3.0E-11 T 22-04-2016 IPR000032 Phosphocarrier HPr protein-like PP4_RS21955 bac161e797180e8af1cea1525d4201e4 90 PANTHER PTHR33705:SF2 1 90 5.5E-39 T 22-04-2016 PP4_RS21955 bac161e797180e8af1cea1525d4201e4 90 SUPERFAMILY SSF55594 1 88 1.44E-26 T 22-04-2016 IPR000032 Phosphocarrier HPr protein-like PP4_RS21955 bac161e797180e8af1cea1525d4201e4 90 ProSitePatterns PS00589 PTS HPR domain serine phosphorylation site signature. 40 55 - T 22-04-2016 IPR002114 Phosphotransferase system, HPr serine phosphorylation site PP4_RS21955 bac161e797180e8af1cea1525d4201e4 90 Pfam PF00381 PTS HPr component phosphorylation site 4 83 9.6E-27 T 22-04-2016 IPR000032 Phosphocarrier HPr protein-like PP4_RS01655 5fef79981fe224a8b8082677e6a6d4be 368 SUPERFAMILY SSF46689 277 325 5.82E-11 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS01655 5fef79981fe224a8b8082677e6a6d4be 368 SUPERFAMILY SSF52317 16 206 6.87E-47 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS01655 5fef79981fe224a8b8082677e6a6d4be 368 Pfam PF01965 DJ-1/PfpI family 21 184 1.3E-15 T 22-04-2016 IPR002818 DJ-1/PfpI PP4_RS01655 5fef79981fe224a8b8082677e6a6d4be 368 Gene3D G3DSA:3.40.50.880 18 231 2.8E-43 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS01655 5fef79981fe224a8b8082677e6a6d4be 368 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 278 320 - T 22-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PP4_RS01655 5fef79981fe224a8b8082677e6a6d4be 368 Pfam PF12833 Helix-turn-helix domain 247 323 2.0E-21 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS01655 5fef79981fe224a8b8082677e6a6d4be 368 Gene3D G3DSA:1.10.10.60 232 278 8.3E-17 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS01655 5fef79981fe224a8b8082677e6a6d4be 368 SMART SM00342 241 324 3.4E-28 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS01655 5fef79981fe224a8b8082677e6a6d4be 368 Gene3D G3DSA:1.10.10.60 281 338 5.2E-14 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS01655 5fef79981fe224a8b8082677e6a6d4be 368 SUPERFAMILY SSF46689 225 275 2.96E-9 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS01655 5fef79981fe224a8b8082677e6a6d4be 368 PANTHER PTHR11019 66 332 4.5E-75 T 22-04-2016 PP4_RS01655 5fef79981fe224a8b8082677e6a6d4be 368 PANTHER PTHR11019 17 40 4.5E-75 T 22-04-2016 PP4_RS01655 5fef79981fe224a8b8082677e6a6d4be 368 PANTHER PTHR11019:SF90 66 332 4.5E-75 T 22-04-2016 PP4_RS01655 5fef79981fe224a8b8082677e6a6d4be 368 PANTHER PTHR11019:SF90 17 40 4.5E-75 T 22-04-2016 PP4_RS11580 72d053190efd2c456777ace7ab3849c6 397 PANTHER PTHR30386 1 376 2.0E-166 T 22-04-2016 PP4_RS11580 72d053190efd2c456777ace7ab3849c6 397 Pfam PF00529 HlyD membrane-fusion protein of T1SS 202 346 2.1E-13 T 22-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 PP4_RS11580 72d053190efd2c456777ace7ab3849c6 397 SUPERFAMILY SSF111369 60 113 3.01E-8 T 22-04-2016 PP4_RS11580 72d053190efd2c456777ace7ab3849c6 397 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 60 291 2.2E-14 T 22-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PP4_RS11580 72d053190efd2c456777ace7ab3849c6 397 Gene3D G3DSA:2.40.50.100 215 248 3.7E-18 T 22-04-2016 PP4_RS11580 72d053190efd2c456777ace7ab3849c6 397 Gene3D G3DSA:2.40.50.100 61 94 3.7E-18 T 22-04-2016 PP4_RS11580 72d053190efd2c456777ace7ab3849c6 397 PANTHER PTHR30386:SF6 1 376 2.0E-166 T 22-04-2016 PP4_RS11580 72d053190efd2c456777ace7ab3849c6 397 Gene3D G3DSA:1.20.120.560 106 165 6.8E-4 T 22-04-2016 PP4_RS11580 72d053190efd2c456777ace7ab3849c6 397 SUPERFAMILY SSF111369 124 183 9.15E-5 T 22-04-2016 PP4_RS11580 72d053190efd2c456777ace7ab3849c6 397 SUPERFAMILY SSF111369 185 268 9.81E-7 T 22-04-2016 PP4_RS27365 fe2095cf22aadecbae0d21f39ccb0052 139 Pfam PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain 89 132 3.2E-6 T 22-04-2016 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain PP4_RS27365 fe2095cf22aadecbae0d21f39ccb0052 139 SUPERFAMILY SSF46604 89 137 4.71E-10 T 22-04-2016 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain PP4_RS27365 fe2095cf22aadecbae0d21f39ccb0052 139 PANTHER PTHR13822 1 137 3.0E-39 T 22-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 PP4_RS27365 fe2095cf22aadecbae0d21f39ccb0052 139 ProDom PD000944 ATP SYNTHASE ION EPSILON SUBUNIT HYDROLASE CF1 SYNTHESIS CHAIN HYDROGEN 10 86 1.0E-37 T 22-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 PP4_RS27365 fe2095cf22aadecbae0d21f39ccb0052 139 Hamap MF_00530 ATP synthase epsilon chain [atpC]. 3 131 19.563 T 22-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 PP4_RS27365 fe2095cf22aadecbae0d21f39ccb0052 139 SUPERFAMILY SSF51344 3 86 6.41E-24 T 22-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 PP4_RS27365 fe2095cf22aadecbae0d21f39ccb0052 139 Gene3D G3DSA:1.20.5.440 92 134 3.7E-14 T 22-04-2016 PP4_RS27365 fe2095cf22aadecbae0d21f39ccb0052 139 TIGRFAM TIGR01216 ATP_synt_epsi: ATP synthase F1, epsilon subunit 4 133 4.7E-44 T 22-04-2016 IPR001469 ATPase, F1 complex, delta/epsilon subunit GO:0015986|GO:0045261|GO:0046933|GO:0046961 PP4_RS27365 fe2095cf22aadecbae0d21f39ccb0052 139 Pfam PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain 6 84 4.6E-30 T 22-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 PP4_RS27365 fe2095cf22aadecbae0d21f39ccb0052 139 Gene3D G3DSA:2.60.15.10 3 91 2.5E-28 T 22-04-2016 IPR020546 ATPase, F1 complex, delta/epsilon subunit, N-terminal GO:0015986|GO:0045261|GO:0046933|GO:0046961 PP4_RS07745 85195b5a257e52f2e337e37e1902958b 313 TIGRFAM TIGR00782 ccoP: cytochrome c oxidase, cbb3-type, subunit III 33 303 1.0E-79 T 22-04-2016 IPR004678 Cytochrome c oxidase cbb3-type, subunit III UniPathway: UPA00705 PP4_RS07745 85195b5a257e52f2e337e37e1902958b 313 SUPERFAMILY SSF46626 55 78 2.62E-33 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS07745 85195b5a257e52f2e337e37e1902958b 313 SUPERFAMILY SSF46626 111 208 2.62E-33 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS07745 85195b5a257e52f2e337e37e1902958b 313 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 221 298 7.4E-11 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS07745 85195b5a257e52f2e337e37e1902958b 313 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 131 205 3.2E-14 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS07745 85195b5a257e52f2e337e37e1902958b 313 PRINTS PR00605 Class IC cytochrome C signature 183 205 8.9E-6 T 22-04-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 PP4_RS07745 85195b5a257e52f2e337e37e1902958b 313 PRINTS PR00605 Class IC cytochrome C signature 141 152 8.9E-6 T 22-04-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 PP4_RS07745 85195b5a257e52f2e337e37e1902958b 313 PIRSF PIRSF000006 1 305 3.8E-104 T 22-04-2016 IPR004678 Cytochrome c oxidase cbb3-type, subunit III UniPathway: UPA00705 PP4_RS07745 85195b5a257e52f2e337e37e1902958b 313 Gene3D G3DSA:1.10.760.10 216 303 1.1E-23 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS07745 85195b5a257e52f2e337e37e1902958b 313 SUPERFAMILY SSF46626 215 303 1.18E-21 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS07745 85195b5a257e52f2e337e37e1902958b 313 PANTHER PTHR33751:SF1 97 308 1.8E-120 T 22-04-2016 PP4_RS07745 85195b5a257e52f2e337e37e1902958b 313 PANTHER PTHR33751:SF1 25 79 1.8E-120 T 22-04-2016 PP4_RS07745 85195b5a257e52f2e337e37e1902958b 313 Pfam PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP 37 83 5.4E-24 T 22-04-2016 IPR032858 Cbb3-type cytochrome c oxidase subunit CcoP, N-terminal UniPathway: UPA00705 PP4_RS07745 85195b5a257e52f2e337e37e1902958b 313 PANTHER PTHR33751 97 308 1.8E-120 T 22-04-2016 PP4_RS07745 85195b5a257e52f2e337e37e1902958b 313 PANTHER PTHR33751 25 79 1.8E-120 T 22-04-2016 PP4_RS07745 85195b5a257e52f2e337e37e1902958b 313 Gene3D G3DSA:1.10.760.10 60 82 1.6E-30 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS07745 85195b5a257e52f2e337e37e1902958b 313 Gene3D G3DSA:1.10.760.10 126 209 1.6E-30 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS04710 0f19a156de19a9f940cef306a4059571 429 SUPERFAMILY SSF103473 13 422 2.09E-65 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS04710 0f19a156de19a9f940cef306a4059571 429 Gene3D G3DSA:1.20.1250.20 240 421 1.3E-18 T 22-04-2016 PP4_RS04710 0f19a156de19a9f940cef306a4059571 429 Gene3D G3DSA:1.20.1250.20 21 223 1.6E-25 T 22-04-2016 PP4_RS04710 0f19a156de19a9f940cef306a4059571 429 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 24 413 7.2E-148 T 22-04-2016 IPR004736 Citrate-proton symport GO:0005215|GO:0006810|GO:0016021 PP4_RS04710 0f19a156de19a9f940cef306a4059571 429 PANTHER PTHR23508 9 419 8.4E-282 T 22-04-2016 PP4_RS04710 0f19a156de19a9f940cef306a4059571 429 PANTHER PTHR23508:SF12 9 419 8.4E-282 T 22-04-2016 PP4_RS04710 0f19a156de19a9f940cef306a4059571 429 Pfam PF07690 Major Facilitator Superfamily 42 379 2.7E-27 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS04710 0f19a156de19a9f940cef306a4059571 429 ProSitePatterns PS00217 Sugar transport proteins signature 2. 127 152 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PP4_RS10560 b6725016ed613d7a3deef50b09d86385 446 PANTHER PTHR23508 29 213 3.6E-69 T 22-04-2016 PP4_RS10560 b6725016ed613d7a3deef50b09d86385 446 PANTHER PTHR23508 245 400 3.6E-69 T 22-04-2016 PP4_RS10560 b6725016ed613d7a3deef50b09d86385 446 ProSitePatterns PS00216 Sugar transport proteins signature 1. 76 93 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PP4_RS10560 b6725016ed613d7a3deef50b09d86385 446 SUPERFAMILY SSF103473 8 432 1.57E-75 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS10560 b6725016ed613d7a3deef50b09d86385 446 Gene3D G3DSA:1.20.1250.20 19 199 5.5E-32 T 22-04-2016 PP4_RS10560 b6725016ed613d7a3deef50b09d86385 446 Gene3D G3DSA:1.20.1250.20 253 439 7.1E-25 T 22-04-2016 PP4_RS10560 b6725016ed613d7a3deef50b09d86385 446 PANTHER PTHR23508:SF15 29 213 3.6E-69 T 22-04-2016 PP4_RS10560 b6725016ed613d7a3deef50b09d86385 446 PANTHER PTHR23508:SF15 245 400 3.6E-69 T 22-04-2016 PP4_RS10560 b6725016ed613d7a3deef50b09d86385 446 ProSitePatterns PS00217 Sugar transport proteins signature 2. 118 143 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PP4_RS10560 b6725016ed613d7a3deef50b09d86385 446 Pfam PF07690 Major Facilitator Superfamily 28 335 1.4E-37 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS22305 7d98bd2c4301ed3f8c6d1ae814a548e6 173 SUPERFAMILY SSF46565 6 76 1.57E-17 T 22-04-2016 IPR001623 DnaJ domain PP4_RS22305 7d98bd2c4301ed3f8c6d1ae814a548e6 173 PANTHER PTHR14021 6 173 2.6E-47 T 22-04-2016 IPR004640 Co-chaperone Hsc20 GO:0006457|GO:0051087 PP4_RS22305 7d98bd2c4301ed3f8c6d1ae814a548e6 173 Gene3D G3DSA:1.10.287.110 6 76 7.6E-23 T 22-04-2016 IPR001623 DnaJ domain PP4_RS22305 7d98bd2c4301ed3f8c6d1ae814a548e6 173 PANTHER PTHR14021:SF15 6 173 2.6E-47 T 22-04-2016 PP4_RS22305 7d98bd2c4301ed3f8c6d1ae814a548e6 173 Pfam PF07743 HSCB C-terminal oligomerisation domain 90 164 2.7E-15 T 22-04-2016 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 PP4_RS22305 7d98bd2c4301ed3f8c6d1ae814a548e6 173 Hamap MF_00682 Co-chaperone protein HscB [hscB]. 4 172 21.358 T 22-04-2016 IPR004640 Co-chaperone Hsc20 GO:0006457|GO:0051087 PP4_RS22305 7d98bd2c4301ed3f8c6d1ae814a548e6 173 Pfam PF00226 DnaJ domain 7 73 4.7E-7 T 22-04-2016 IPR001623 DnaJ domain PP4_RS22305 7d98bd2c4301ed3f8c6d1ae814a548e6 173 SUPERFAMILY SSF47144 82 173 1.2E-23 T 22-04-2016 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 PP4_RS22305 7d98bd2c4301ed3f8c6d1ae814a548e6 173 Gene3D G3DSA:1.20.1280.20 84 173 3.0E-26 T 22-04-2016 IPR009073 Co-chaperone HscB, C-terminal oligomerisation domain GO:0051259 PP4_RS22305 7d98bd2c4301ed3f8c6d1ae814a548e6 173 SMART SM00271 4 69 3.8E-10 T 22-04-2016 IPR001623 DnaJ domain PP4_RS22305 7d98bd2c4301ed3f8c6d1ae814a548e6 173 TIGRFAM TIGR00714 hscB: Fe-S protein assembly co-chaperone HscB 16 171 5.3E-32 T 22-04-2016 IPR004640 Co-chaperone Hsc20 GO:0006457|GO:0051087 PP4_RS09560 6e60c80b728f19ec05b7720b11b488cd 379 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 23 364 1.7E-70 T 22-04-2016 IPR003462 Ornithine cyclodeaminase/mu-crystallin PP4_RS09560 6e60c80b728f19ec05b7720b11b488cd 379 PIRSF PIRSF001439 3 373 3.1E-100 T 22-04-2016 IPR003462 Ornithine cyclodeaminase/mu-crystallin PP4_RS09560 6e60c80b728f19ec05b7720b11b488cd 379 PANTHER PTHR13812:SF19 276 375 1.6E-36 T 22-04-2016 PP4_RS09560 6e60c80b728f19ec05b7720b11b488cd 379 PANTHER PTHR13812:SF19 4 249 1.6E-36 T 22-04-2016 PP4_RS09560 6e60c80b728f19ec05b7720b11b488cd 379 Gene3D G3DSA:3.40.50.720 166 344 8.9E-32 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS09560 6e60c80b728f19ec05b7720b11b488cd 379 PANTHER PTHR13812 276 375 1.6E-36 T 22-04-2016 PP4_RS09560 6e60c80b728f19ec05b7720b11b488cd 379 PANTHER PTHR13812 4 249 1.6E-36 T 22-04-2016 PP4_RS09560 6e60c80b728f19ec05b7720b11b488cd 379 Gene3D G3DSA:3.30.1780.10 8 165 9.3E-42 T 22-04-2016 IPR023401 Ornithine cyclodeaminase, N-terminal PP4_RS09560 6e60c80b728f19ec05b7720b11b488cd 379 SUPERFAMILY SSF51735 5 376 6.7E-72 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS02300 89830330a1fd6098939190ca3558d0ce 277 PANTHER PTHR22854 1 264 9.0E-112 T 22-04-2016 PP4_RS02300 89830330a1fd6098939190ca3558d0ce 277 Pfam PF00218 Indole-3-glycerol phosphate synthase 7 262 3.2E-98 T 22-04-2016 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 PP4_RS02300 89830330a1fd6098939190ca3558d0ce 277 Gene3D G3DSA:3.20.20.70 5 267 6.7E-103 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS02300 89830330a1fd6098939190ca3558d0ce 277 ProSitePatterns PS00614 Indole-3-glycerol phosphate synthase signature. 58 76 - T 22-04-2016 IPR001468 Indole-3-glycerol phosphate synthase, conserved site GO:0004425|GO:0006568 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 PP4_RS02300 89830330a1fd6098939190ca3558d0ce 277 SUPERFAMILY SSF51366 14 265 2.94E-87 T 22-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 PP4_RS02300 89830330a1fd6098939190ca3558d0ce 277 PANTHER PTHR22854:SF2 1 264 9.0E-112 T 22-04-2016 PP4_RS02300 89830330a1fd6098939190ca3558d0ce 277 Hamap MF_00134_B Indole-3-glycerol phosphate synthase [trpC]. 5 265 36.205 T 22-04-2016 IPR013798 Indole-3-glycerol phosphate synthase GO:0004425 KEGG: 00400+4.1.1.48|UniPathway: UPA00035 PP4_RS18910 f287e14aebc507465f6a020d8fd2c93d 344 Gene3D G3DSA:3.30.1330.60 235 339 1.1E-41 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS18910 f287e14aebc507465f6a020d8fd2c93d 344 PANTHER PTHR30128 169 340 1.1E-63 T 22-04-2016 PP4_RS18910 f287e14aebc507465f6a020d8fd2c93d 344 PRINTS PR01021 OMPA domain signature 283 299 3.3E-17 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PP4_RS18910 f287e14aebc507465f6a020d8fd2c93d 344 PRINTS PR01021 OMPA domain signature 238 260 3.3E-17 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PP4_RS18910 f287e14aebc507465f6a020d8fd2c93d 344 PRINTS PR01021 OMPA domain signature 268 283 3.3E-17 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PP4_RS18910 f287e14aebc507465f6a020d8fd2c93d 344 SUPERFAMILY SSF103647 192 225 4.71E-9 T 22-04-2016 IPR028974 TSP type-3 repeat GO:0005509 PP4_RS18910 f287e14aebc507465f6a020d8fd2c93d 344 Pfam PF05736 OprF membrane domain 1 179 1.4E-83 T 22-04-2016 IPR008722 Outer membrane porin F, N-terminal PP4_RS18910 f287e14aebc507465f6a020d8fd2c93d 344 Pfam PF00691 OmpA family 238 333 1.7E-23 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS18910 f287e14aebc507465f6a020d8fd2c93d 344 PANTHER PTHR30128:SF10 169 340 1.1E-63 T 22-04-2016 PP4_RS18910 f287e14aebc507465f6a020d8fd2c93d 344 SUPERFAMILY SSF103088 223 338 7.72E-39 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS18910 f287e14aebc507465f6a020d8fd2c93d 344 SUPERFAMILY SSF56925 39 180 3.92E-15 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 PP4_RS18910 f287e14aebc507465f6a020d8fd2c93d 344 Gene3D G3DSA:4.10.1080.10 195 234 1.4E-6 T 22-04-2016 IPR028974 TSP type-3 repeat GO:0005509 PP4_RS18910 f287e14aebc507465f6a020d8fd2c93d 344 ProSitePatterns PS01068 OmpA-like domain. 270 315 - T 22-04-2016 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 PP4_RS18910 f287e14aebc507465f6a020d8fd2c93d 344 Gene3D G3DSA:2.40.160.20 49 154 7.3E-13 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 PP4_RS19715 4e5ef45bce12d7959d26a0621762ce75 403 Gene3D G3DSA:3.40.640.10 50 278 5.0E-67 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS19715 4e5ef45bce12d7959d26a0621762ce75 403 Gene3D G3DSA:3.90.1150.10 279 402 2.6E-39 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS19715 4e5ef45bce12d7959d26a0621762ce75 403 Pfam PF00155 Aminotransferase class I and II 35 385 1.3E-48 T 22-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PP4_RS19715 4e5ef45bce12d7959d26a0621762ce75 403 PANTHER PTHR11751:SF303 8 399 2.3E-191 T 22-04-2016 PP4_RS19715 4e5ef45bce12d7959d26a0621762ce75 403 SUPERFAMILY SSF53383 6 400 9.44E-95 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS19715 4e5ef45bce12d7959d26a0621762ce75 403 PANTHER PTHR11751 8 399 2.3E-191 T 22-04-2016 PP4_RS00375 ac1e3e4705cdb176a73a53285d8a7fe4 298 SUPERFAMILY SSF53850 95 295 5.61E-25 T 22-04-2016 PP4_RS00375 ac1e3e4705cdb176a73a53285d8a7fe4 298 PANTHER PTHR30537 1 296 3.3E-121 T 22-04-2016 PP4_RS00375 ac1e3e4705cdb176a73a53285d8a7fe4 298 Gene3D G3DSA:3.40.190.10 164 264 4.8E-31 T 22-04-2016 PP4_RS00375 ac1e3e4705cdb176a73a53285d8a7fe4 298 Pfam PF03466 LysR substrate binding domain 96 293 1.7E-23 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS00375 ac1e3e4705cdb176a73a53285d8a7fe4 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 8.5E-21 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS00375 ac1e3e4705cdb176a73a53285d8a7fe4 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 7.0E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS00375 ac1e3e4705cdb176a73a53285d8a7fe4 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 7.0E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS00375 ac1e3e4705cdb176a73a53285d8a7fe4 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 7.0E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS00375 ac1e3e4705cdb176a73a53285d8a7fe4 298 Gene3D G3DSA:1.10.10.10 4 86 1.6E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS00375 ac1e3e4705cdb176a73a53285d8a7fe4 298 SUPERFAMILY SSF46785 4 86 4.0E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS00375 ac1e3e4705cdb176a73a53285d8a7fe4 298 PANTHER PTHR30537:SF16 1 296 3.3E-121 T 22-04-2016 PP4_RS05745 05afbf16fa7dfe3e91502aba14b3f5a8 440 PRINTS PR00173 Glutamate-aspartate symporter signature 46 66 9.0E-37 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS05745 05afbf16fa7dfe3e91502aba14b3f5a8 440 PRINTS PR00173 Glutamate-aspartate symporter signature 194 213 9.0E-37 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS05745 05afbf16fa7dfe3e91502aba14b3f5a8 440 PRINTS PR00173 Glutamate-aspartate symporter signature 76 101 9.0E-37 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS05745 05afbf16fa7dfe3e91502aba14b3f5a8 440 PRINTS PR00173 Glutamate-aspartate symporter signature 147 169 9.0E-37 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS05745 05afbf16fa7dfe3e91502aba14b3f5a8 440 PRINTS PR00173 Glutamate-aspartate symporter signature 329 348 9.0E-37 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS05745 05afbf16fa7dfe3e91502aba14b3f5a8 440 PRINTS PR00173 Glutamate-aspartate symporter signature 294 320 9.0E-37 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS05745 05afbf16fa7dfe3e91502aba14b3f5a8 440 PRINTS PR00173 Glutamate-aspartate symporter signature 5 25 9.0E-37 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS05745 05afbf16fa7dfe3e91502aba14b3f5a8 440 Hamap MF_01300 C4-dicarboxylate transport protein [dctA]. 4 430 37.996 T 22-04-2016 IPR023954 C4-dicarboxylate transport protein GO:0006835|GO:0015293|GO:0016021 PP4_RS05745 05afbf16fa7dfe3e91502aba14b3f5a8 440 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 297 320 - T 22-04-2016 IPR018107 Sodium:dicarboxylate symporter, conserved site Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS05745 05afbf16fa7dfe3e91502aba14b3f5a8 440 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 38 53 - T 22-04-2016 IPR018107 Sodium:dicarboxylate symporter, conserved site Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS05745 05afbf16fa7dfe3e91502aba14b3f5a8 440 PANTHER PTHR11958 7 437 4.1E-257 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS05745 05afbf16fa7dfe3e91502aba14b3f5a8 440 Gene3D G3DSA:1.10.3860.10 8 408 4.0E-119 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS05745 05afbf16fa7dfe3e91502aba14b3f5a8 440 SUPERFAMILY SSF118215 11 403 4.71E-120 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS05745 05afbf16fa7dfe3e91502aba14b3f5a8 440 PANTHER PTHR11958:SF49 7 437 4.1E-257 T 22-04-2016 PP4_RS05745 05afbf16fa7dfe3e91502aba14b3f5a8 440 Pfam PF00375 Sodium:dicarboxylate symporter family 11 403 1.2E-113 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS23870 d33e99cad1e701831b0b5d4e9aa4c8db 215 Gene3D G3DSA:1.10.357.10 19 177 7.1E-18 T 22-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PP4_RS23870 d33e99cad1e701831b0b5d4e9aa4c8db 215 PANTHER PTHR30328:SF27 19 206 5.5E-12 T 22-04-2016 PP4_RS23870 d33e99cad1e701831b0b5d4e9aa4c8db 215 PANTHER PTHR30328 19 206 5.5E-12 T 22-04-2016 PP4_RS23870 d33e99cad1e701831b0b5d4e9aa4c8db 215 SUPERFAMILY SSF46689 17 71 2.31E-10 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS23870 d33e99cad1e701831b0b5d4e9aa4c8db 215 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 65 6.3E-7 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS01745 ca871afa670fd130a749cfe8cabff868 366 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 288 359 2.0E-11 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS01745 ca871afa670fd130a749cfe8cabff868 366 Gene3D G3DSA:3.10.20.30 249 365 6.6E-29 T 22-04-2016 IPR012675 Beta-grasp domain PP4_RS01745 ca871afa670fd130a749cfe8cabff868 366 Gene3D G3DSA:2.40.30.10 20 114 1.9E-27 T 22-04-2016 PP4_RS01745 ca871afa670fd130a749cfe8cabff868 366 Pfam PF00970 Oxidoreductase FAD-binding domain 25 116 4.5E-16 T 22-04-2016 IPR008333 Oxidoreductase, FAD-binding domain PP4_RS01745 ca871afa670fd130a749cfe8cabff868 366 SUPERFAMILY SSF52343 108 250 5.63E-37 T 22-04-2016 PP4_RS01745 ca871afa670fd130a749cfe8cabff868 366 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 127 146 2.6E-5 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS01745 ca871afa670fd130a749cfe8cabff868 366 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 220 228 2.6E-5 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS01745 ca871afa670fd130a749cfe8cabff868 366 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 67 74 2.6E-5 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS01745 ca871afa670fd130a749cfe8cabff868 366 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 164 175 2.6E-5 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS01745 ca871afa670fd130a749cfe8cabff868 366 PANTHER PTHR19370 19 272 9.2E-127 T 22-04-2016 PP4_RS01745 ca871afa670fd130a749cfe8cabff868 366 Gene3D G3DSA:3.40.50.80 123 248 4.3E-34 T 22-04-2016 PP4_RS01745 ca871afa670fd130a749cfe8cabff868 366 SUPERFAMILY SSF54292 243 365 1.11E-25 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS01745 ca871afa670fd130a749cfe8cabff868 366 PANTHER PTHR19370:SF89 19 272 9.2E-127 T 22-04-2016 PP4_RS01745 ca871afa670fd130a749cfe8cabff868 366 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 316 324 - T 22-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 PP4_RS01745 ca871afa670fd130a749cfe8cabff868 366 Pfam PF00175 Oxidoreductase NAD-binding domain 129 234 1.6E-14 T 22-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 PP4_RS01745 ca871afa670fd130a749cfe8cabff868 366 SUPERFAMILY SSF63380 13 117 1.55E-27 T 22-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 PP4_RS01745 ca871afa670fd130a749cfe8cabff868 366 PRINTS PR00406 Cytochrome B5 reductase signature 127 146 1.2E-9 T 22-04-2016 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 PP4_RS01745 ca871afa670fd130a749cfe8cabff868 366 PRINTS PR00406 Cytochrome B5 reductase signature 164 175 1.2E-9 T 22-04-2016 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 PP4_RS01745 ca871afa670fd130a749cfe8cabff868 366 PRINTS PR00406 Cytochrome B5 reductase signature 104 118 1.2E-9 T 22-04-2016 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 PP4_RS01745 ca871afa670fd130a749cfe8cabff868 366 PRINTS PR00406 Cytochrome B5 reductase signature 220 228 1.2E-9 T 22-04-2016 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 PP4_RS01745 ca871afa670fd130a749cfe8cabff868 366 PRINTS PR00406 Cytochrome B5 reductase signature 67 74 1.2E-9 T 22-04-2016 IPR001834 NADH:cytochrome b5 reductase (CBR) GO:0016491|GO:0055114 PP4_RS10690 902f168e29a6966d2d6fb2108bd86198 470 PANTHER PTHR11986:SF72 15 462 3.3E-231 T 22-04-2016 PP4_RS10690 902f168e29a6966d2d6fb2108bd86198 470 Pfam PF00202 Aminotransferase class-III 35 454 2.3E-93 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS10690 902f168e29a6966d2d6fb2108bd86198 470 SUPERFAMILY SSF53383 19 454 1.13E-112 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS10690 902f168e29a6966d2d6fb2108bd86198 470 Gene3D G3DSA:3.40.640.10 74 352 1.6E-74 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS10690 902f168e29a6966d2d6fb2108bd86198 470 Gene3D G3DSA:3.90.1150.10 354 457 2.3E-39 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS10690 902f168e29a6966d2d6fb2108bd86198 470 Gene3D G3DSA:3.90.1150.10 15 73 2.3E-39 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS10690 902f168e29a6966d2d6fb2108bd86198 470 PANTHER PTHR11986 15 462 3.3E-231 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS04170 434e1c38ca1569436b96cf31c4d61154 159 Gene3D G3DSA:1.10.10.10 2 56 2.2E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS04170 434e1c38ca1569436b96cf31c4d61154 159 SUPERFAMILY SSF54909 65 154 2.28E-21 T 22-04-2016 IPR011008 Dimeric alpha-beta barrel PP4_RS04170 434e1c38ca1569436b96cf31c4d61154 159 Pfam PF13412 Winged helix-turn-helix DNA-binding 5 52 9.5E-18 T 22-04-2016 PP4_RS04170 434e1c38ca1569436b96cf31c4d61154 159 ProSitePatterns PS00519 AsnC-type HTH domain signature. 23 49 - T 22-04-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PP4_RS04170 434e1c38ca1569436b96cf31c4d61154 159 SUPERFAMILY SSF46785 5 65 7.91E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS04170 434e1c38ca1569436b96cf31c4d61154 159 PANTHER PTHR30154:SF28 1 156 6.8E-58 T 22-04-2016 PP4_RS04170 434e1c38ca1569436b96cf31c4d61154 159 SMART SM00344 5 114 9.0E-50 T 22-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 PP4_RS04170 434e1c38ca1569436b96cf31c4d61154 159 PANTHER PTHR30154 1 156 6.8E-58 T 22-04-2016 PP4_RS04170 434e1c38ca1569436b96cf31c4d61154 159 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 21 32 1.4E-12 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS04170 434e1c38ca1569436b96cf31c4d61154 159 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 5 21 1.4E-12 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS04170 434e1c38ca1569436b96cf31c4d61154 159 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 32 51 1.4E-12 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS04170 434e1c38ca1569436b96cf31c4d61154 159 Pfam PF01037 Lrp/AsnC ligand binding domain 71 144 6.4E-20 T 22-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PP4_RS04170 434e1c38ca1569436b96cf31c4d61154 159 Gene3D G3DSA:3.30.70.920 58 154 5.6E-27 T 22-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PP4_RS01015 c38925167e6808a53edebdba19af5725 448 PANTHER PTHR33507:SF1 1 443 3.4E-136 T 22-04-2016 PP4_RS01015 c38925167e6808a53edebdba19af5725 448 Gene3D G3DSA:2.40.50.140 385 439 1.1E-7 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS01015 c38925167e6808a53edebdba19af5725 448 SUPERFAMILY SSF141322 374 440 1.7E-6 T 22-04-2016 PP4_RS01015 c38925167e6808a53edebdba19af5725 448 Gene3D G3DSA:3.90.226.10 30 128 5.0E-19 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS01015 c38925167e6808a53edebdba19af5725 448 Gene3D G3DSA:3.90.226.10 176 210 5.0E-19 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS01015 c38925167e6808a53edebdba19af5725 448 PANTHER PTHR33507 1 443 3.4E-136 T 22-04-2016 PP4_RS01015 c38925167e6808a53edebdba19af5725 448 SUPERFAMILY SSF52096 26 201 1.85E-28 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS01015 c38925167e6808a53edebdba19af5725 448 Pfam PF01957 NfeD-like C-terminal, partner-binding 301 439 1.5E-30 T 22-04-2016 IPR002810 NfeD-like, C-terminal domain PP4_RS07710 5dab2656352dd6e4cefe144f18b248e2 824 Gene3D G3DSA:3.40.50.1000 614 762 5.4E-53 T 22-04-2016 IPR023214 HAD-like domain PP4_RS07710 5dab2656352dd6e4cefe144f18b248e2 824 Gene3D G3DSA:3.40.50.1000 481 524 5.4E-53 T 22-04-2016 IPR023214 HAD-like domain PP4_RS07710 5dab2656352dd6e4cefe144f18b248e2 824 Pfam PF00702 haloacid dehalogenase-like hydrolase 504 708 5.5E-33 T 22-04-2016 PP4_RS07710 5dab2656352dd6e4cefe144f18b248e2 824 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 641 651 1.2E-21 T 22-04-2016 PP4_RS07710 5dab2656352dd6e4cefe144f18b248e2 824 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 717 729 1.2E-21 T 22-04-2016 PP4_RS07710 5dab2656352dd6e4cefe144f18b248e2 824 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 508 522 1.2E-21 T 22-04-2016 PP4_RS07710 5dab2656352dd6e4cefe144f18b248e2 824 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 694 713 1.2E-21 T 22-04-2016 PP4_RS07710 5dab2656352dd6e4cefe144f18b248e2 824 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 360 374 1.2E-21 T 22-04-2016 PP4_RS07710 5dab2656352dd6e4cefe144f18b248e2 824 TIGRFAM TIGR01511 ATPase-IB1_Cu: copper-translocating P-type ATPase 231 796 1.2E-142 T 22-04-2016 PP4_RS07710 5dab2656352dd6e4cefe144f18b248e2 824 SUPERFAMILY SSF56784 558 794 2.78E-51 T 22-04-2016 IPR023214 HAD-like domain PP4_RS07710 5dab2656352dd6e4cefe144f18b248e2 824 SUPERFAMILY SSF56784 506 526 2.78E-51 T 22-04-2016 IPR023214 HAD-like domain PP4_RS07710 5dab2656352dd6e4cefe144f18b248e2 824 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 609 776 5.1E-32 T 22-04-2016 IPR001757 P-type ATPase GO:0016021 PP4_RS07710 5dab2656352dd6e4cefe144f18b248e2 824 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 286 530 3.9E-34 T 22-04-2016 IPR001757 P-type ATPase GO:0016021 PP4_RS07710 5dab2656352dd6e4cefe144f18b248e2 824 PANTHER PTHR24093 77 799 3.2E-180 T 22-04-2016 PP4_RS07710 5dab2656352dd6e4cefe144f18b248e2 824 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 248 796 9.0E-156 T 22-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 PP4_RS07710 5dab2656352dd6e4cefe144f18b248e2 824 Pfam PF12156 Putative metal-binding domain of cation transport ATPase 7 89 4.4E-28 T 22-04-2016 IPR021993 Putative metal-binding domain of cation transport ATPase PP4_RS07710 5dab2656352dd6e4cefe144f18b248e2 824 Pfam PF00403 Heavy-metal-associated domain 96 156 1.5E-8 T 22-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 PP4_RS07710 5dab2656352dd6e4cefe144f18b248e2 824 SUPERFAMILY SSF81665 411 502 3.66E-9 T 22-04-2016 PP4_RS07710 5dab2656352dd6e4cefe144f18b248e2 824 SUPERFAMILY SSF81665 743 760 3.66E-9 T 22-04-2016 PP4_RS07710 5dab2656352dd6e4cefe144f18b248e2 824 SUPERFAMILY SSF81665 261 309 3.66E-9 T 22-04-2016 PP4_RS07710 5dab2656352dd6e4cefe144f18b248e2 824 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 510 516 - T 22-04-2016 IPR018303 P-type ATPase, phosphorylation site PP4_RS07710 5dab2656352dd6e4cefe144f18b248e2 824 Gene3D G3DSA:2.70.150.10 275 410 9.5E-21 T 22-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 PP4_RS07710 5dab2656352dd6e4cefe144f18b248e2 824 Gene3D G3DSA:3.40.1110.10 525 593 8.6E-4 T 22-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 PP4_RS07710 5dab2656352dd6e4cefe144f18b248e2 824 SUPERFAMILY SSF55008 87 165 9.82E-18 T 22-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 PP4_RS07710 5dab2656352dd6e4cefe144f18b248e2 824 PANTHER PTHR24093:SF50 77 799 3.2E-180 T 22-04-2016 PP4_RS07710 5dab2656352dd6e4cefe144f18b248e2 824 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 281 797 5.7E-113 T 22-04-2016 PP4_RS07710 5dab2656352dd6e4cefe144f18b248e2 824 SUPERFAMILY SSF81653 323 409 6.54E-21 T 22-04-2016 PP4_RS07710 5dab2656352dd6e4cefe144f18b248e2 824 Gene3D G3DSA:3.30.70.100 93 174 3.1E-16 T 22-04-2016 PP4_RS07710 5dab2656352dd6e4cefe144f18b248e2 824 Pfam PF00122 E1-E2 ATPase 281 499 1.5E-53 T 22-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 PP4_RS25485 1efab4897d1db249450ff5a382abfefd 686 PANTHER PTHR32089 318 681 8.4E-130 T 22-04-2016 PP4_RS25485 1efab4897d1db249450ff5a382abfefd 686 PANTHER PTHR32089:SF43 318 681 8.4E-130 T 22-04-2016 PP4_RS25485 1efab4897d1db249450ff5a382abfefd 686 SUPERFAMILY SSF58104 379 679 1.44E-66 T 22-04-2016 PP4_RS25485 1efab4897d1db249450ff5a382abfefd 686 Gene3D G3DSA:1.10.287.950 432 649 2.8E-52 T 22-04-2016 PP4_RS25485 1efab4897d1db249450ff5a382abfefd 686 Pfam PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term 43 152 8.8E-26 T 22-04-2016 IPR029095 NarX-like, N-terminal PP4_RS25485 1efab4897d1db249450ff5a382abfefd 686 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 479 677 9.1E-48 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS25485 1efab4897d1db249450ff5a382abfefd 686 SMART SM00283 417 678 1.9E-90 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS09055 141064d05636a27714f1825746bd7df2 250 PIRSF PIRSF015736 1 250 1.7E-68 T 22-04-2016 IPR026286 Maleate isomerase/Arylmalonate decarboxylase PP4_RS09055 141064d05636a27714f1825746bd7df2 250 Hamap MF_00943 Maleate isomerase [maiA]. 5 250 50.313 T 22-04-2016 IPR028615 Maleate isomerase GO:0050076 KEGG: 00650+5.2.1.1|KEGG: 00760+5.2.1.1|MetaCyc: PWY-5033|MetaCyc: PWY-6993|MetaCyc: PWY-7128|MetaCyc: PWY-722 PP4_RS09055 141064d05636a27714f1825746bd7df2 250 Gene3D G3DSA:1.20.1270.60 15 105 4.8E-4 T 22-04-2016 IPR027267 Arfaptin homology (AH) domain/BAR domain PP4_RS09055 141064d05636a27714f1825746bd7df2 250 PANTHER PTHR40267 1 246 7.7E-30 T 22-04-2016 PP4_RS16495 eba953fad4487fe6c48e271d145984f9 302 Gene3D G3DSA:3.40.190.10 273 300 9.3E-30 T 22-04-2016 PP4_RS16495 eba953fad4487fe6c48e271d145984f9 302 Gene3D G3DSA:3.40.190.10 92 173 9.3E-30 T 22-04-2016 PP4_RS16495 eba953fad4487fe6c48e271d145984f9 302 Pfam PF03466 LysR substrate binding domain 97 295 2.3E-18 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS16495 eba953fad4487fe6c48e271d145984f9 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 2.9E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16495 eba953fad4487fe6c48e271d145984f9 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 2.9E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16495 eba953fad4487fe6c48e271d145984f9 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 2.9E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16495 eba953fad4487fe6c48e271d145984f9 302 Gene3D G3DSA:3.40.190.10 174 268 1.0E-25 T 22-04-2016 PP4_RS16495 eba953fad4487fe6c48e271d145984f9 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 68 2.4E-17 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16495 eba953fad4487fe6c48e271d145984f9 302 SUPERFAMILY SSF46785 8 86 5.85E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16495 eba953fad4487fe6c48e271d145984f9 302 Gene3D G3DSA:1.10.10.10 10 86 1.6E-26 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16495 eba953fad4487fe6c48e271d145984f9 302 SUPERFAMILY SSF53850 92 297 1.56E-39 T 22-04-2016 PP4_RS16495 eba953fad4487fe6c48e271d145984f9 302 PANTHER PTHR30118:SF8 10 294 6.5E-101 T 22-04-2016 PP4_RS16495 eba953fad4487fe6c48e271d145984f9 302 PANTHER PTHR30118 10 294 6.5E-101 T 22-04-2016 PP4_RS23000 e67633c30f516e46a04e0294e5bfea31 350 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 268 347 2.2E-30 T 22-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 PP4_RS23000 e67633c30f516e46a04e0294e5bfea31 350 Gene3D G3DSA:1.10.10.60 135 177 1.5E-7 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS23000 e67633c30f516e46a04e0294e5bfea31 350 SUPERFAMILY SSF46767 266 347 1.06E-29 T 22-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 PP4_RS23000 e67633c30f516e46a04e0294e5bfea31 350 Gene3D G3DSA:1.10.10.60 82 134 2.3E-19 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS23000 e67633c30f516e46a04e0294e5bfea31 350 SUPERFAMILY SSF46689 133 181 6.72E-5 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS23000 e67633c30f516e46a04e0294e5bfea31 350 Pfam PF12833 Helix-turn-helix domain 102 180 3.9E-19 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS23000 e67633c30f516e46a04e0294e5bfea31 350 SMART SM00342 96 179 2.3E-20 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS23000 e67633c30f516e46a04e0294e5bfea31 350 Gene3D G3DSA:1.10.10.10 266 347 4.8E-32 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS23000 e67633c30f516e46a04e0294e5bfea31 350 SUPERFAMILY SSF46689 80 129 1.04E-7 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS23000 e67633c30f516e46a04e0294e5bfea31 350 Gene3D G3DSA:3.40.10.10 4 81 4.0E-30 T 22-04-2016 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 PP4_RS23000 e67633c30f516e46a04e0294e5bfea31 350 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 317 323 - T 22-04-2016 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 PP4_RS23000 e67633c30f516e46a04e0294e5bfea31 350 PANTHER PTHR10815 155 346 6.4E-119 T 22-04-2016 PP4_RS23000 e67633c30f516e46a04e0294e5bfea31 350 PIRSF PIRSF000409 1 350 2.3E-139 T 22-04-2016 IPR016221 Bifunctional regulatory protein Ada PP4_RS23000 e67633c30f516e46a04e0294e5bfea31 350 Gene3D G3DSA:3.30.160.70 178 265 4.5E-35 T 22-04-2016 PP4_RS23000 e67633c30f516e46a04e0294e5bfea31 350 PANTHER PTHR10815:SF9 155 346 6.4E-119 T 22-04-2016 PP4_RS23000 e67633c30f516e46a04e0294e5bfea31 350 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 267 346 1.2E-33 T 22-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 PP4_RS23000 e67633c30f516e46a04e0294e5bfea31 350 Pfam PF02805 Metal binding domain of Ada 9 70 2.8E-29 T 22-04-2016 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 PP4_RS23000 e67633c30f516e46a04e0294e5bfea31 350 SUPERFAMILY SSF57884 3 87 1.14E-29 T 22-04-2016 IPR004026 Ada DNA repair, metal-binding GO:0003677|GO:0006281|GO:0006355|GO:0008168|GO:0008270 PP4_RS23000 e67633c30f516e46a04e0294e5bfea31 350 SUPERFAMILY SSF53155 186 264 2.75E-21 T 22-04-2016 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 PP4_RS02315 5dfed6fd96dc4d520bbb033d32970a7b 140 Gene3D G3DSA:2.20.25.10 1 34 2.1E-17 T 22-04-2016 PP4_RS02315 5dfed6fd96dc4d520bbb033d32970a7b 140 SUPERFAMILY SSF82784 1 137 1.96E-39 T 22-04-2016 IPR003718 OsmC/Ohr family PP4_RS02315 5dfed6fd96dc4d520bbb033d32970a7b 140 Pfam PF02566 OsmC-like protein 34 131 1.7E-18 T 22-04-2016 IPR003718 OsmC/Ohr family PP4_RS02315 5dfed6fd96dc4d520bbb033d32970a7b 140 Gene3D G3DSA:3.30.300.20 39 137 2.8E-42 T 22-04-2016 IPR015946 K homology domain-like, alpha/beta PP4_RS02315 5dfed6fd96dc4d520bbb033d32970a7b 140 PANTHER PTHR34352 1 140 1.2E-50 T 22-04-2016 PP4_RS20460 096c6d4871e5c05c93f2fe7e4a9c1cdb 254 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 21 131 1.1E-30 T 22-04-2016 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 PP4_RS20460 096c6d4871e5c05c93f2fe7e4a9c1cdb 254 Gene3D G3DSA:1.10.287.460 26 114 1.3E-27 T 22-04-2016 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 PP4_RS20460 096c6d4871e5c05c93f2fe7e4a9c1cdb 254 PANTHER PTHR10516:SF320 73 90 1.8E-56 T 22-04-2016 PP4_RS20460 096c6d4871e5c05c93f2fe7e4a9c1cdb 254 PANTHER PTHR10516:SF320 109 231 1.8E-56 T 22-04-2016 PP4_RS20460 096c6d4871e5c05c93f2fe7e4a9c1cdb 254 Gene3D G3DSA:3.10.50.40 115 229 1.3E-43 T 22-04-2016 PP4_RS20460 096c6d4871e5c05c93f2fe7e4a9c1cdb 254 SUPERFAMILY SSF54534 31 229 8.05E-56 T 22-04-2016 PP4_RS20460 096c6d4871e5c05c93f2fe7e4a9c1cdb 254 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 138 226 2.8E-25 T 22-04-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 PP4_RS20460 096c6d4871e5c05c93f2fe7e4a9c1cdb 254 PANTHER PTHR10516 73 90 1.8E-56 T 22-04-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type PP4_RS20460 096c6d4871e5c05c93f2fe7e4a9c1cdb 254 PANTHER PTHR10516 109 231 1.8E-56 T 22-04-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type PP4_RS03465 927265da45542d0539f3bc10d2ebed00 163 SUPERFAMILY SSF103088 46 160 7.72E-31 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS03465 927265da45542d0539f3bc10d2ebed00 163 PRINTS PR01021 OMPA domain signature 60 82 4.3E-11 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PP4_RS03465 927265da45542d0539f3bc10d2ebed00 163 PRINTS PR01021 OMPA domain signature 105 121 4.3E-11 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PP4_RS03465 927265da45542d0539f3bc10d2ebed00 163 PRINTS PR01021 OMPA domain signature 90 105 4.3E-11 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PP4_RS03465 927265da45542d0539f3bc10d2ebed00 163 PANTHER PTHR30128:SF12 9 163 5.8E-47 T 22-04-2016 PP4_RS03465 927265da45542d0539f3bc10d2ebed00 163 PANTHER PTHR30128 9 163 5.8E-47 T 22-04-2016 PP4_RS03465 927265da45542d0539f3bc10d2ebed00 163 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 105 122 1.3E-7 T 22-04-2016 PP4_RS03465 927265da45542d0539f3bc10d2ebed00 163 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 143 163 1.3E-7 T 22-04-2016 PP4_RS03465 927265da45542d0539f3bc10d2ebed00 163 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 123 142 1.3E-7 T 22-04-2016 PP4_RS03465 927265da45542d0539f3bc10d2ebed00 163 Pfam PF00691 OmpA family 60 154 6.0E-18 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS03465 927265da45542d0539f3bc10d2ebed00 163 ProSitePatterns PS01068 OmpA-like domain. 92 136 - T 22-04-2016 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 PP4_RS03465 927265da45542d0539f3bc10d2ebed00 163 Gene3D G3DSA:3.30.1330.60 46 160 2.3E-32 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS27370 a857a0858dab1ee3b002850afd4771eb 458 Gene3D G3DSA:2.40.10.170 2 72 1.8E-29 T 22-04-2016 PP4_RS27370 a857a0858dab1ee3b002850afd4771eb 458 Gene3D G3DSA:3.40.50.300 74 341 2.4E-107 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS27370 a857a0858dab1ee3b002850afd4771eb 458 Gene3D G3DSA:1.10.1140.10 343 458 3.3E-56 T 22-04-2016 IPR024034 ATPase, F1 complex beta subunit/V1 complex, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PP4_RS27370 a857a0858dab1ee3b002850afd4771eb 458 SUPERFAMILY SSF52540 75 345 5.32E-90 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS27370 a857a0858dab1ee3b002850afd4771eb 458 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 331 340 - T 22-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PP4_RS27370 a857a0858dab1ee3b002850afd4771eb 458 PANTHER PTHR15184 1 458 0.0 T 22-04-2016 PP4_RS27370 a857a0858dab1ee3b002850afd4771eb 458 SUPERFAMILY SSF47917 343 457 7.85E-53 T 22-04-2016 IPR000793 ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal GO:0015991|GO:0016820|GO:0033178 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PP4_RS27370 a857a0858dab1ee3b002850afd4771eb 458 TIGRFAM TIGR01039 atpD: ATP synthase F1, beta subunit 3 458 2.9E-253 T 22-04-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PP4_RS27370 a857a0858dab1ee3b002850afd4771eb 458 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 6 71 3.3E-21 T 22-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PP4_RS27370 a857a0858dab1ee3b002850afd4771eb 458 SUPERFAMILY SSF50615 2 72 7.32E-25 T 22-04-2016 IPR004100 ATPase, F1 complex alpha/beta subunit, N-terminal domain GO:0015992|GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PP4_RS27370 a857a0858dab1ee3b002850afd4771eb 458 SMART SM00382 140 325 6.1E-4 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS27370 a857a0858dab1ee3b002850afd4771eb 458 Hamap MF_01347 ATP synthase subunit beta [atpB]. 1 458 56.181 T 22-04-2016 IPR005722 ATPase, F1 complex, beta subunit GO:0015986|GO:0046933 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PP4_RS27370 a857a0858dab1ee3b002850afd4771eb 458 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 128 340 1.2E-63 T 22-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PP4_RS27370 a857a0858dab1ee3b002850afd4771eb 458 PANTHER PTHR15184:SF44 1 458 0.0 T 22-04-2016 PP4_RS21300 b0b51e84ca904d7eb44154b022111c56 303 SUPERFAMILY SSF161098 19 297 3.08E-42 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS21300 b0b51e84ca904d7eb44154b022111c56 303 PANTHER PTHR30193 13 297 1.1E-93 T 22-04-2016 PP4_RS21300 b0b51e84ca904d7eb44154b022111c56 303 Gene3D G3DSA:1.10.3720.10 14 290 4.4E-39 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS21300 b0b51e84ca904d7eb44154b022111c56 303 PANTHER PTHR30193:SF5 13 297 1.1E-93 T 22-04-2016 PP4_RS21300 b0b51e84ca904d7eb44154b022111c56 303 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 297 4.2E-13 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS27205 81144e4a3abdc3f23fbe0f4b07729b3b 347 Pfam PF00850 Histone deacetylase domain 29 336 1.2E-63 T 22-04-2016 IPR023801 Histone deacetylase domain PP4_RS27205 81144e4a3abdc3f23fbe0f4b07729b3b 347 PRINTS PR01270 Histone deacetylase superfamily signature 155 178 2.7E-12 T 22-04-2016 IPR000286 Histone deacetylase superfamily PP4_RS27205 81144e4a3abdc3f23fbe0f4b07729b3b 347 PRINTS PR01270 Histone deacetylase superfamily signature 188 203 2.7E-12 T 22-04-2016 IPR000286 Histone deacetylase superfamily PP4_RS27205 81144e4a3abdc3f23fbe0f4b07729b3b 347 PRINTS PR01270 Histone deacetylase superfamily signature 274 284 2.7E-12 T 22-04-2016 IPR000286 Histone deacetylase superfamily PP4_RS27205 81144e4a3abdc3f23fbe0f4b07729b3b 347 Gene3D G3DSA:3.40.800.20 3 339 8.5E-74 T 22-04-2016 IPR023801 Histone deacetylase domain PP4_RS27205 81144e4a3abdc3f23fbe0f4b07729b3b 347 PANTHER PTHR10625:SF121 23 75 7.0E-97 T 22-04-2016 PP4_RS27205 81144e4a3abdc3f23fbe0f4b07729b3b 347 PANTHER PTHR10625:SF121 99 336 7.0E-97 T 22-04-2016 PP4_RS27205 81144e4a3abdc3f23fbe0f4b07729b3b 347 SUPERFAMILY SSF52768 2 340 2.97E-87 T 22-04-2016 PP4_RS27205 81144e4a3abdc3f23fbe0f4b07729b3b 347 PANTHER PTHR10625 23 75 7.0E-97 T 22-04-2016 IPR000286 Histone deacetylase superfamily PP4_RS27205 81144e4a3abdc3f23fbe0f4b07729b3b 347 PANTHER PTHR10625 99 336 7.0E-97 T 22-04-2016 IPR000286 Histone deacetylase superfamily PP4_RS16880 9625f0e575a539061638b8807873b648 412 PIRSF PIRSF001235 1 409 4.2E-139 T 22-04-2016 IPR010158 Amidase, hydantoinase/carbamoylase GO:0008152|GO:0016813 PP4_RS16880 9625f0e575a539061638b8807873b648 412 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 7 402 1.7E-128 T 22-04-2016 IPR010158 Amidase, hydantoinase/carbamoylase GO:0008152|GO:0016813 PP4_RS16880 9625f0e575a539061638b8807873b648 412 Gene3D G3DSA:3.40.630.10 347 405 8.8E-113 T 22-04-2016 PP4_RS16880 9625f0e575a539061638b8807873b648 412 Gene3D G3DSA:3.40.630.10 2 221 8.8E-113 T 22-04-2016 PP4_RS16880 9625f0e575a539061638b8807873b648 412 Gene3D G3DSA:3.30.70.360 222 325 1.0E-37 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain PP4_RS16880 9625f0e575a539061638b8807873b648 412 Pfam PF01546 Peptidase family M20/M25/M40 77 402 2.3E-36 T 22-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 PP4_RS16880 9625f0e575a539061638b8807873b648 412 SUPERFAMILY SSF55031 209 325 3.31E-27 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain PP4_RS16880 9625f0e575a539061638b8807873b648 412 PANTHER PTHR32494:SF6 5 405 3.6E-163 T 22-04-2016 PP4_RS16880 9625f0e575a539061638b8807873b648 412 SUPERFAMILY SSF53187 332 403 1.51E-89 T 22-04-2016 PP4_RS16880 9625f0e575a539061638b8807873b648 412 SUPERFAMILY SSF53187 2 219 1.51E-89 T 22-04-2016 PP4_RS16880 9625f0e575a539061638b8807873b648 412 PANTHER PTHR32494 5 405 3.6E-163 T 22-04-2016 PP4_RS05985 a8fa14539da9cfd90fe4ac3a70d12118 79 SUPERFAMILY SSF64307 5 78 7.59E-22 T 22-04-2016 IPR001455 TusA-like domain PP4_RS05985 a8fa14539da9cfd90fe4ac3a70d12118 79 Gene3D G3DSA:3.30.110.40 6 78 2.0E-26 T 22-04-2016 IPR001455 TusA-like domain PP4_RS05985 a8fa14539da9cfd90fe4ac3a70d12118 79 Pfam PF01206 Sulfurtransferase TusA 10 78 7.4E-21 T 22-04-2016 IPR001455 TusA-like domain PP4_RS05985 a8fa14539da9cfd90fe4ac3a70d12118 79 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 11 35 - T 22-04-2016 IPR001455 TusA-like domain PP4_RS05985 a8fa14539da9cfd90fe4ac3a70d12118 79 PANTHER PTHR33279 8 78 7.1E-18 T 22-04-2016 PP4_RS22040 eb26bc5b92049913bdb5360124adb2f8 483 SUPERFAMILY SSF75304 2 480 3.27E-169 T 22-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PP4_RS22040 eb26bc5b92049913bdb5360124adb2f8 483 Pfam PF01425 Amidase 22 463 8.6E-158 T 22-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PP4_RS22040 eb26bc5b92049913bdb5360124adb2f8 483 Gene3D G3DSA:3.90.1300.10 2 480 9.4E-187 T 22-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PP4_RS22040 eb26bc5b92049913bdb5360124adb2f8 483 ProSitePatterns PS00571 Amidases signature. 149 180 - T 22-04-2016 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PP4_RS22040 eb26bc5b92049913bdb5360124adb2f8 483 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 9 474 93.249 T 22-04-2016 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PP4_RS22040 eb26bc5b92049913bdb5360124adb2f8 483 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 13 474 6.0E-176 T 22-04-2016 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PP4_RS22040 eb26bc5b92049913bdb5360124adb2f8 483 PANTHER PTHR11895 1 480 1.6E-224 T 22-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PP4_RS22040 eb26bc5b92049913bdb5360124adb2f8 483 PANTHER PTHR11895:SF7 1 480 1.6E-224 T 22-04-2016 PP4_RS02370 6f84d1f40b4f50c1af050ed4726948ec 399 Pfam PF01479 S4 domain 338 371 2.9E-6 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 PP4_RS02370 6f84d1f40b4f50c1af050ed4726948ec 399 Pfam PF00579 tRNA synthetases class I (W and Y) 31 310 3.7E-81 T 22-04-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS02370 6f84d1f40b4f50c1af050ed4726948ec 399 SUPERFAMILY SSF55174 320 396 1.26E-15 T 22-04-2016 PP4_RS02370 6f84d1f40b4f50c1af050ed4726948ec 399 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 52 - T 22-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS02370 6f84d1f40b4f50c1af050ed4726948ec 399 PANTHER PTHR11766 4 397 6.2E-224 T 22-04-2016 IPR024088 Tyrosine-tRNA ligase, bacterial-type GO:0004831 KEGG: 00970+6.1.1.1 PP4_RS02370 6f84d1f40b4f50c1af050ed4726948ec 399 PANTHER PTHR11766:SF1 4 397 6.2E-224 T 22-04-2016 PP4_RS02370 6f84d1f40b4f50c1af050ed4726948ec 399 Gene3D G3DSA:1.10.240.10 228 326 4.7E-35 T 22-04-2016 PP4_RS02370 6f84d1f40b4f50c1af050ed4726948ec 399 Gene3D G3DSA:3.40.50.620 10 227 1.2E-86 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS02370 6f84d1f40b4f50c1af050ed4726948ec 399 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 2 396 7.9E-121 T 22-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 PP4_RS02370 6f84d1f40b4f50c1af050ed4726948ec 399 SUPERFAMILY SSF52374 4 309 8.45E-101 T 22-04-2016 PP4_RS02370 6f84d1f40b4f50c1af050ed4726948ec 399 Hamap MF_02007 Tyrosine--tRNA ligase [tyrS]. 2 396 48.031 T 22-04-2016 IPR024108 Tyrosine-tRNA ligase, bacterial-type, type 2 GO:0004831 KEGG: 00970+6.1.1.1 PP4_RS02370 6f84d1f40b4f50c1af050ed4726948ec 399 Gene3D G3DSA:3.10.290.10 327 396 7.4E-19 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 PP4_RS02370 6f84d1f40b4f50c1af050ed4726948ec 399 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 211 223 1.95E-25 T 22-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 PP4_RS02370 6f84d1f40b4f50c1af050ed4726948ec 399 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 178 200 1.95E-25 T 22-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 PP4_RS02370 6f84d1f40b4f50c1af050ed4726948ec 399 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 46 68 1.95E-25 T 22-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 PP4_RS02370 6f84d1f40b4f50c1af050ed4726948ec 399 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 161 176 1.95E-25 T 22-04-2016 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1|Reactome: REACT_71 PP4_RS17590 d65cc1966c10ccab65333ab402f2a648 157 Hamap MF_00930 Transcription elongation factor GreB [greB]. 1 156 52.602 T 22-04-2016 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 PP4_RS17590 d65cc1966c10ccab65333ab402f2a648 157 PIRSF PIRSF006092 2 157 9.1E-46 T 22-04-2016 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 PP4_RS17590 d65cc1966c10ccab65333ab402f2a648 157 ProSitePatterns PS00830 Prokaryotic transcription elongation factors signature 2. 119 135 - T 22-04-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 PP4_RS17590 d65cc1966c10ccab65333ab402f2a648 157 SUPERFAMILY SSF46557 3 78 2.22E-26 T 22-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 PP4_RS17590 d65cc1966c10ccab65333ab402f2a648 157 TIGRFAM TIGR01461 greB: transcription elongation factor GreB 3 155 4.1E-79 T 22-04-2016 IPR006358 Transcription elongation factor GreB GO:0003677|GO:0032784 PP4_RS17590 d65cc1966c10ccab65333ab402f2a648 157 Gene3D G3DSA:1.10.287.180 3 75 4.9E-25 T 22-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 PP4_RS17590 d65cc1966c10ccab65333ab402f2a648 157 SUPERFAMILY SSF54534 80 155 5.36E-22 T 22-04-2016 PP4_RS17590 d65cc1966c10ccab65333ab402f2a648 157 Pfam PF03449 Transcription elongation factor, N-terminal 5 74 1.8E-25 T 22-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 PP4_RS17590 d65cc1966c10ccab65333ab402f2a648 157 PANTHER PTHR30437:SF6 2 155 6.3E-85 T 22-04-2016 PP4_RS17590 d65cc1966c10ccab65333ab402f2a648 157 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 22-04-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 PP4_RS17590 d65cc1966c10ccab65333ab402f2a648 157 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 81 155 2.1E-25 T 22-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 PP4_RS17590 d65cc1966c10ccab65333ab402f2a648 157 Gene3D G3DSA:3.10.50.30 77 155 3.4E-28 T 22-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 PP4_RS17590 d65cc1966c10ccab65333ab402f2a648 157 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 154 27.375 T 22-04-2016 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 PP4_RS17590 d65cc1966c10ccab65333ab402f2a648 157 PANTHER PTHR30437 2 155 6.3E-85 T 22-04-2016 PP4_RS04090 79eb9fbf33e77ee19a3d72dd60a32bc9 259 Hamap MF_00652 UPF0246 protein YaaA [yaaA]. 1 255 38.648 T 22-04-2016 IPR005583 Peroxide stress protein YaaA PP4_RS04090 79eb9fbf33e77ee19a3d72dd60a32bc9 259 Pfam PF03883 Protein of unknown function (DUF328) 1 243 2.7E-91 T 22-04-2016 IPR005583 Peroxide stress protein YaaA PP4_RS04090 79eb9fbf33e77ee19a3d72dd60a32bc9 259 PANTHER PTHR30283:SF3 2 255 7.6E-122 T 22-04-2016 PP4_RS04090 79eb9fbf33e77ee19a3d72dd60a32bc9 259 PANTHER PTHR30283 2 255 7.6E-122 T 22-04-2016 PP4_RS25745 98ed20c25f8e6b0a20090d2d038b6f4c 816 Gene3D G3DSA:3.40.50.2000 10 482 5.7E-196 T 22-04-2016 PP4_RS25745 98ed20c25f8e6b0a20090d2d038b6f4c 816 Gene3D G3DSA:3.40.50.2000 483 799 4.8E-120 T 22-04-2016 PP4_RS25745 98ed20c25f8e6b0a20090d2d038b6f4c 816 SUPERFAMILY SSF53756 9 813 0.0 T 22-04-2016 PP4_RS25745 98ed20c25f8e6b0a20090d2d038b6f4c 816 PANTHER PTHR11468 6 813 0.0 T 22-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 PP4_RS25745 98ed20c25f8e6b0a20090d2d038b6f4c 816 PANTHER PTHR11468:SF3 6 813 0.0 T 22-04-2016 PP4_RS25745 98ed20c25f8e6b0a20090d2d038b6f4c 816 Pfam PF00343 Carbohydrate phosphorylase 101 813 5.7E-300 T 22-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 PP4_RS25745 98ed20c25f8e6b0a20090d2d038b6f4c 816 PIRSF PIRSF000460 3 816 1.3E-222 T 22-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 PP4_RS25745 98ed20c25f8e6b0a20090d2d038b6f4c 816 ProSitePatterns PS00102 Phosphorylase pyridoxal-phosphate attachment site. 658 670 - T 22-04-2016 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 PP4_RS25745 98ed20c25f8e6b0a20090d2d038b6f4c 816 TIGRFAM TIGR02093 P_ylase: glycogen/starch/alpha-glucan phosphorylases 13 813 0.0 T 22-04-2016 IPR011833 Glycogen/starch/alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: REACT_474 PP4_RS15000 b74a94a2a5302e3d1e1daf3882615405 304 Gene3D G3DSA:1.10.150.130 10 94 5.3E-4 T 22-04-2016 IPR023109 Integrase/recombinase, N-terminal PP4_RS15000 b74a94a2a5302e3d1e1daf3882615405 304 PANTHER PTHR30349 10 303 2.5E-32 T 22-04-2016 PP4_RS15000 b74a94a2a5302e3d1e1daf3882615405 304 PANTHER PTHR30349:SF5 10 303 2.5E-32 T 22-04-2016 PP4_RS15000 b74a94a2a5302e3d1e1daf3882615405 304 SUPERFAMILY SSF56349 116 303 7.36E-37 T 22-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 PP4_RS15000 b74a94a2a5302e3d1e1daf3882615405 304 Pfam PF00589 Phage integrase family 117 291 6.3E-23 T 22-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 PP4_RS15000 b74a94a2a5302e3d1e1daf3882615405 304 Gene3D G3DSA:1.10.443.10 122 299 3.9E-32 T 22-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 PP4_RS17965 8df831377bb6eef1d2410bc220e0c440 394 Pfam PF00108 Thiolase, N-terminal domain 5 262 1.5E-61 T 22-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 PP4_RS17965 8df831377bb6eef1d2410bc220e0c440 394 ProSitePatterns PS00737 Thiolases signature 2. 340 356 - T 22-04-2016 IPR020613 Thiolase, conserved site GO:0008152|GO:0016747 PP4_RS17965 8df831377bb6eef1d2410bc220e0c440 394 Pfam PF02803 Thiolase, C-terminal domain 272 392 2.9E-41 T 22-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 PP4_RS17965 8df831377bb6eef1d2410bc220e0c440 394 PANTHER PTHR18919 1 394 8.0E-196 T 22-04-2016 PP4_RS17965 8df831377bb6eef1d2410bc220e0c440 394 PANTHER PTHR18919:SF14 1 394 8.0E-196 T 22-04-2016 PP4_RS17965 8df831377bb6eef1d2410bc220e0c440 394 Gene3D G3DSA:3.40.47.10 187 275 2.4E-53 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS17965 8df831377bb6eef1d2410bc220e0c440 394 Gene3D G3DSA:3.40.47.10 4 125 2.4E-53 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS17965 8df831377bb6eef1d2410bc220e0c440 394 SUPERFAMILY SSF53901 1 268 1.46E-63 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS17965 8df831377bb6eef1d2410bc220e0c440 394 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 392 5.0E-121 T 22-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 PP4_RS17965 8df831377bb6eef1d2410bc220e0c440 394 SUPERFAMILY SSF53901 272 393 2.1E-39 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS17965 8df831377bb6eef1d2410bc220e0c440 394 Gene3D G3DSA:3.40.47.10 278 393 2.0E-59 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS17965 8df831377bb6eef1d2410bc220e0c440 394 Gene3D G3DSA:3.40.47.10 145 186 2.0E-59 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS17965 8df831377bb6eef1d2410bc220e0c440 394 PIRSF PIRSF000429 1 394 2.2E-114 T 22-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 PP4_RS15205 adefa5fe7f1f3de188ce37a701c07483 595 SUPERFAMILY SSF52467 189 356 4.19E-39 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain PP4_RS15205 adefa5fe7f1f3de188ce37a701c07483 595 Gene3D G3DSA:3.40.50.970 346 553 9.8E-53 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS15205 adefa5fe7f1f3de188ce37a701c07483 595 SUPERFAMILY SSF52518 364 569 1.54E-51 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS15205 adefa5fe7f1f3de188ce37a701c07483 595 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 425 444 - T 22-04-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 PP4_RS15205 adefa5fe7f1f3de188ce37a701c07483 595 PANTHER PTHR18968:SF124 4 562 3.0E-233 T 22-04-2016 PP4_RS15205 adefa5fe7f1f3de188ce37a701c07483 595 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 198 328 3.3E-23 T 22-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 PP4_RS15205 adefa5fe7f1f3de188ce37a701c07483 595 SUPERFAMILY SSF52518 4 175 2.95E-49 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS15205 adefa5fe7f1f3de188ce37a701c07483 595 Gene3D G3DSA:3.40.50.1220 194 345 5.6E-39 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain PP4_RS15205 adefa5fe7f1f3de188ce37a701c07483 595 Gene3D G3DSA:3.40.50.970 4 176 2.7E-60 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS15205 adefa5fe7f1f3de188ce37a701c07483 595 PANTHER PTHR18968 4 562 3.0E-233 T 22-04-2016 PP4_RS15205 adefa5fe7f1f3de188ce37a701c07483 595 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 388 542 8.6E-27 T 22-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 PP4_RS15205 adefa5fe7f1f3de188ce37a701c07483 595 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 4 173 6.3E-48 T 22-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 PP4_RS10870 36b7e4a660f851e10e81c1109f72d332 487 Pfam PF00083 Sugar (and other) transporter 21 462 1.9E-105 T 22-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 PP4_RS10870 36b7e4a660f851e10e81c1109f72d332 487 Gene3D G3DSA:1.20.1250.20 268 460 1.4E-19 T 22-04-2016 PP4_RS10870 36b7e4a660f851e10e81c1109f72d332 487 Gene3D G3DSA:1.20.1250.20 22 217 1.7E-21 T 22-04-2016 PP4_RS10870 36b7e4a660f851e10e81c1109f72d332 487 PRINTS PR00171 Sugar transporter signature 29 39 2.6E-18 T 22-04-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 PP4_RS10870 36b7e4a660f851e10e81c1109f72d332 487 PRINTS PR00171 Sugar transporter signature 365 386 2.6E-18 T 22-04-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 PP4_RS10870 36b7e4a660f851e10e81c1109f72d332 487 PRINTS PR00171 Sugar transporter signature 388 400 2.6E-18 T 22-04-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 PP4_RS10870 36b7e4a660f851e10e81c1109f72d332 487 PRINTS PR00171 Sugar transporter signature 117 136 2.6E-18 T 22-04-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 PP4_RS10870 36b7e4a660f851e10e81c1109f72d332 487 PRINTS PR00171 Sugar transporter signature 276 286 2.6E-18 T 22-04-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 PP4_RS10870 36b7e4a660f851e10e81c1109f72d332 487 PANTHER PTHR23500:SF141 13 461 2.5E-152 T 22-04-2016 PP4_RS10870 36b7e4a660f851e10e81c1109f72d332 487 SUPERFAMILY SSF103473 11 461 1.83E-69 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS10870 36b7e4a660f851e10e81c1109f72d332 487 PANTHER PTHR23500 13 461 2.5E-152 T 22-04-2016 PP4_RS10870 36b7e4a660f851e10e81c1109f72d332 487 TIGRFAM TIGR00879 SP: MFS transporter, sugar porter (SP) family 18 459 5.2E-101 T 22-04-2016 IPR003663 Sugar/inositol transporter GO:0016020|GO:0022891|GO:0055085 Reactome: REACT_15518 PP4_RS06830 62e2ef19d061686bad037ea5deedc3dc 406 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 223 260 - T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS06830 62e2ef19d061686bad037ea5deedc3dc 406 SUPERFAMILY SSF53383 17 400 5.24E-129 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS06830 62e2ef19d061686bad037ea5deedc3dc 406 TIGRFAM TIGR03246 arg_catab_astC: succinylornithine transaminase family 8 403 7.4E-227 T 22-04-2016 IPR017652 Acetyl/Succinylornithine transaminase family, bacteria GO:0006520|GO:0008483|GO:0030170 PP4_RS06830 62e2ef19d061686bad037ea5deedc3dc 406 TIGRFAM TIGR00707 argD: transaminase, acetylornithine/succinylornithine family 17 400 6.6E-159 T 22-04-2016 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 PP4_RS06830 62e2ef19d061686bad037ea5deedc3dc 406 Gene3D G3DSA:3.40.640.10 61 303 6.9E-92 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS06830 62e2ef19d061686bad037ea5deedc3dc 406 Gene3D G3DSA:3.90.1150.10 14 60 5.7E-36 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS06830 62e2ef19d061686bad037ea5deedc3dc 406 Gene3D G3DSA:3.90.1150.10 307 401 5.7E-36 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS06830 62e2ef19d061686bad037ea5deedc3dc 406 Hamap MF_01107 Acetylornithine/succinyldiaminopimelate aminotransferase [argD]. 14 401 46.426 T 22-04-2016 IPR004636 Acetylornithine/Succinylornithine transaminase family GO:0006525|GO:0008483 PP4_RS06830 62e2ef19d061686bad037ea5deedc3dc 406 PANTHER PTHR11986 1 400 1.2E-222 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS06830 62e2ef19d061686bad037ea5deedc3dc 406 Pfam PF00202 Aminotransferase class-III 21 400 1.2E-129 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS06830 62e2ef19d061686bad037ea5deedc3dc 406 PANTHER PTHR11986:SF71 1 400 1.2E-222 T 22-04-2016 PP4_RS20380 dc9a821e0ad1d16ced8b852d7daa3763 211 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 53 67 - T 22-04-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS20380 dc9a821e0ad1d16ced8b852d7daa3763 211 PANTHER PTHR11079 6 210 2.0E-64 T 22-04-2016 PP4_RS20380 dc9a821e0ad1d16ced8b852d7daa3763 211 Pfam PF00849 RNA pseudouridylate synthase 15 161 5.5E-29 T 22-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS20380 dc9a821e0ad1d16ced8b852d7daa3763 211 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 5 210 1.9E-58 T 22-04-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS20380 dc9a821e0ad1d16ced8b852d7daa3763 211 SUPERFAMILY SSF55120 5 210 1.76E-62 T 22-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS20380 dc9a821e0ad1d16ced8b852d7daa3763 211 PANTHER PTHR11079:SF86 6 210 2.0E-64 T 22-04-2016 PP4_RS07225 cd2f9891243c2a1570c39c54dafe6816 115 SUPERFAMILY SSF47226 5 110 1.15E-25 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS07225 cd2f9891243c2a1570c39c54dafe6816 115 Gene3D G3DSA:1.20.120.160 3 106 2.6E-25 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS07225 cd2f9891243c2a1570c39c54dafe6816 115 Pfam PF01627 Hpt domain 24 84 4.7E-12 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS11295 dca5fc83dc85133a0e402fe6d562c789 526 PANTHER PTHR11699 1 519 1.5E-158 T 22-04-2016 PP4_RS11295 dca5fc83dc85133a0e402fe6d562c789 526 Gene3D G3DSA:3.40.605.10 7 265 1.8E-47 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS11295 dca5fc83dc85133a0e402fe6d562c789 526 SUPERFAMILY SSF53720 20 519 3.93E-97 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS11295 dca5fc83dc85133a0e402fe6d562c789 526 PANTHER PTHR11699:SF10 1 519 1.5E-158 T 22-04-2016 PP4_RS11295 dca5fc83dc85133a0e402fe6d562c789 526 Pfam PF00171 Aldehyde dehydrogenase family 20 457 1.0E-44 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PP4_RS11295 dca5fc83dc85133a0e402fe6d562c789 526 Gene3D G3DSA:3.40.309.10 267 454 3.8E-52 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PP4_RS13530 cbbcea705df3d76217e4017f76bfa876 347 Gene3D G3DSA:2.130.10.140 70 281 4.1E-32 T 22-04-2016 PP4_RS13530 cbbcea705df3d76217e4017f76bfa876 347 Pfam PF14870 Photosynthesis system II assembly factor YCF48 68 176 2.2E-12 T 22-04-2016 IPR028203 Photosynthesis system II assembly factor Ycf48/Hcf136-like domain PP4_RS13530 cbbcea705df3d76217e4017f76bfa876 347 SUPERFAMILY SSF110296 63 284 1.07E-38 T 22-04-2016 PP4_RS24400 5816ac71caed3f563b7b76ff93429eec 289 Gene3D G3DSA:3.30.70.1350 209 289 6.8E-24 T 22-04-2016 IPR027470 Cation efflux protein, cytoplasmic domain PP4_RS24400 5816ac71caed3f563b7b76ff93429eec 289 Pfam PF01545 Cation efflux family 16 208 4.0E-36 T 22-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 PP4_RS24400 5816ac71caed3f563b7b76ff93429eec 289 PANTHER PTHR11562:SF55 6 288 6.3E-101 T 22-04-2016 PP4_RS24400 5816ac71caed3f563b7b76ff93429eec 289 SUPERFAMILY SSF160240 212 289 4.58E-21 T 22-04-2016 PP4_RS24400 5816ac71caed3f563b7b76ff93429eec 289 Gene3D G3DSA:1.20.1510.10 14 208 6.2E-44 T 22-04-2016 IPR027469 Cation efflux protein transmembrane domain PP4_RS24400 5816ac71caed3f563b7b76ff93429eec 289 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 15 288 2.5E-65 T 22-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 PP4_RS24400 5816ac71caed3f563b7b76ff93429eec 289 SUPERFAMILY SSF161111 8 209 3.01E-52 T 22-04-2016 PP4_RS24400 5816ac71caed3f563b7b76ff93429eec 289 PANTHER PTHR11562 6 288 6.3E-101 T 22-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 PP4_RS24400 5816ac71caed3f563b7b76ff93429eec 289 Pfam PF16916 Dimerisation domain of Zinc Transporter 213 289 1.1E-20 T 22-04-2016 IPR027470 Cation efflux protein, cytoplasmic domain PP4_RS02865 dbe3c1db28b99fef4a3fc26aeaddc834 247 SUPERFAMILY SSF53850 37 235 4.71E-23 T 22-04-2016 PP4_RS02865 dbe3c1db28b99fef4a3fc26aeaddc834 247 PANTHER PTHR35936 1 245 1.0E-51 T 22-04-2016 PP4_RS02865 dbe3c1db28b99fef4a3fc26aeaddc834 247 Gene3D G3DSA:3.40.190.10 198 234 2.7E-5 T 22-04-2016 PP4_RS02865 dbe3c1db28b99fef4a3fc26aeaddc834 247 Gene3D G3DSA:3.40.190.10 40 109 2.7E-5 T 22-04-2016 PP4_RS02865 dbe3c1db28b99fef4a3fc26aeaddc834 247 PANTHER PTHR35936:SF2 1 245 1.0E-51 T 22-04-2016 PP4_RS02865 dbe3c1db28b99fef4a3fc26aeaddc834 247 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 40 235 1.0E-9 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS08825 24216942c98e0218cae4ef9c8e548810 142 Gene3D G3DSA:3.40.630.30 13 138 4.6E-38 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS08825 24216942c98e0218cae4ef9c8e548810 142 Pfam PF13673 Acetyltransferase (GNAT) domain 24 138 6.4E-23 T 22-04-2016 IPR000182 GNAT domain GO:0008080 PP4_RS08825 24216942c98e0218cae4ef9c8e548810 142 PANTHER PTHR13355 17 138 6.9E-31 T 22-04-2016 PP4_RS08825 24216942c98e0218cae4ef9c8e548810 142 SUPERFAMILY SSF55729 4 139 4.97E-36 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS08825 24216942c98e0218cae4ef9c8e548810 142 PANTHER PTHR13355:SF8 17 138 6.9E-31 T 22-04-2016 PP4_RS02825 571e4d319c41328200efe7456caa5ce9 154 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 147 3.1E-71 T 22-04-2016 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 PP4_RS02825 571e4d319c41328200efe7456caa5ce9 154 Pfam PF03477 ATP cone domain 52 136 1.6E-14 T 22-04-2016 IPR005144 ATP-cone domain PP4_RS02825 571e4d319c41328200efe7456caa5ce9 154 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 153 90.022 T 22-04-2016 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 PP4_RS02825 571e4d319c41328200efe7456caa5ce9 154 PANTHER PTHR30455 2 154 4.2E-72 T 22-04-2016 PP4_RS02825 571e4d319c41328200efe7456caa5ce9 154 PANTHER PTHR30455:SF2 2 154 4.2E-72 T 22-04-2016 PP4_RS15030 dff39ee5af0753044c7381a29110c11f 513 SMART SM00858 19 88 3.2E-13 T 22-04-2016 IPR013974 SAF domain PP4_RS15030 dff39ee5af0753044c7381a29110c11f 513 Pfam PF08666 SAF domain 19 87 3.3E-13 T 22-04-2016 IPR013974 SAF domain PP4_RS15030 dff39ee5af0753044c7381a29110c11f 513 Pfam PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus 111 511 2.3E-162 T 22-04-2016 IPR007392 D-galactarate/Altronate dehydratase, C-terminal GO:0016829 PP4_RS15030 dff39ee5af0753044c7381a29110c11f 513 PANTHER PTHR30536:SF5 1 513 7.2E-211 T 22-04-2016 PP4_RS15030 dff39ee5af0753044c7381a29110c11f 513 PANTHER PTHR30536 1 513 7.2E-211 T 22-04-2016 PP4_RS08875 5378956e4ce55e4a90a869fd93d05549 756 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 657 737 1.5E-24 T 22-04-2016 IPR019489 Clp ATPase, C-terminal PP4_RS08875 5378956e4ce55e4a90a869fd93d05549 756 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 306 318 - T 22-04-2016 IPR018368 ClpA/B, conserved site 1 GO:0005524 PP4_RS08875 5378956e4ce55e4a90a869fd93d05549 756 SUPERFAMILY SSF52540 171 420 5.7E-70 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS08875 5378956e4ce55e4a90a869fd93d05549 756 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 522 540 - T 22-04-2016 IPR028299 ClpA/B, conserved site 2 PP4_RS08875 5378956e4ce55e4a90a869fd93d05549 756 TIGRFAM TIGR02639 ClpA: ATP-dependent Clp protease ATP-binding subunit ClpA 3 739 0.0 T 22-04-2016 IPR013461 ATP-dependent Clp protease ATP-binding subunit ClpA GO:0004176 PP4_RS08875 5378956e4ce55e4a90a869fd93d05549 756 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 13 62 3.9E-15 T 22-04-2016 IPR004176 Clp, N-terminal GO:0019538 PP4_RS08875 5378956e4ce55e4a90a869fd93d05549 756 Gene3D G3DSA:1.10.8.60 669 752 2.9E-30 T 22-04-2016 PP4_RS08875 5378956e4ce55e4a90a869fd93d05549 756 SUPERFAMILY SSF52540 441 747 1.46E-79 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS08875 5378956e4ce55e4a90a869fd93d05549 756 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 566 584 1.7E-37 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 PP4_RS08875 5378956e4ce55e4a90a869fd93d05549 756 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 537 555 1.7E-37 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 PP4_RS08875 5378956e4ce55e4a90a869fd93d05549 756 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 495 513 1.7E-37 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 PP4_RS08875 5378956e4ce55e4a90a869fd93d05549 756 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 599 613 1.7E-37 T 22-04-2016 IPR001270 ClpA/B family GO:0005524 PP4_RS08875 5378956e4ce55e4a90a869fd93d05549 756 SUPERFAMILY SSF81923 1 142 1.7E-60 T 22-04-2016 IPR004176 Clp, N-terminal GO:0019538 PP4_RS08875 5378956e4ce55e4a90a869fd93d05549 756 Gene3D G3DSA:1.10.8.60 355 436 1.8E-29 T 22-04-2016 PP4_RS08875 5378956e4ce55e4a90a869fd93d05549 756 Gene3D G3DSA:3.40.50.300 446 668 6.3E-61 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS08875 5378956e4ce55e4a90a869fd93d05549 756 PANTHER PTHR11638 1 754 0.0 T 22-04-2016 PP4_RS08875 5378956e4ce55e4a90a869fd93d05549 756 PANTHER PTHR11638:SF111 1 754 0.0 T 22-04-2016 PP4_RS08875 5378956e4ce55e4a90a869fd93d05549 756 SMART SM00382 491 658 2.4E-11 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS08875 5378956e4ce55e4a90a869fd93d05549 756 SMART SM00382 210 355 5.8E-10 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS08875 5378956e4ce55e4a90a869fd93d05549 756 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 215 327 1.8E-11 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 PP4_RS08875 5378956e4ce55e4a90a869fd93d05549 756 Pfam PF07724 AAA domain (Cdc48 subfamily) 490 651 2.9E-48 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 PP4_RS08875 5378956e4ce55e4a90a869fd93d05549 756 Gene3D G3DSA:1.10.1780.10 1 142 4.6E-43 T 22-04-2016 IPR004176 Clp, N-terminal GO:0019538 PP4_RS08875 5378956e4ce55e4a90a869fd93d05549 756 SMART SM01086 657 747 3.0E-32 T 22-04-2016 IPR019489 Clp ATPase, C-terminal PP4_RS08875 5378956e4ce55e4a90a869fd93d05549 756 Gene3D G3DSA:3.40.50.300 173 354 4.9E-44 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS10880 80eee35c109e09547d9230b04dce55d4 101 Pfam PF07876 Stress responsive A/B Barrel Domain 4 100 6.4E-21 T 22-04-2016 IPR013097 Stress responsive alpha-beta barrel PP4_RS10880 80eee35c109e09547d9230b04dce55d4 101 PANTHER PTHR37832 1 99 1.0E-19 T 22-04-2016 PP4_RS10880 80eee35c109e09547d9230b04dce55d4 101 Gene3D G3DSA:3.30.70.900 2 99 5.8E-26 T 22-04-2016 PP4_RS10880 80eee35c109e09547d9230b04dce55d4 101 PANTHER PTHR37832:SF1 1 99 1.0E-19 T 22-04-2016 PP4_RS10880 80eee35c109e09547d9230b04dce55d4 101 SUPERFAMILY SSF54909 3 100 2.86E-22 T 22-04-2016 IPR011008 Dimeric alpha-beta barrel PP4_RS10880 80eee35c109e09547d9230b04dce55d4 101 SMART SM00886 4 101 9.8E-28 T 22-04-2016 IPR013097 Stress responsive alpha-beta barrel PP4_RS10595 5047d352f502bb78b799f750e8e18ae6 286 SUPERFAMILY SSF103481 41 138 6.54E-6 T 22-04-2016 PP4_RS10595 5047d352f502bb78b799f750e8e18ae6 286 PANTHER PTHR22911 3 283 2.8E-17 T 22-04-2016 PP4_RS10595 5047d352f502bb78b799f750e8e18ae6 286 Pfam PF00892 EamA-like transporter family 4 134 3.6E-10 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS10595 5047d352f502bb78b799f750e8e18ae6 286 Pfam PF00892 EamA-like transporter family 152 283 3.0E-14 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS10595 5047d352f502bb78b799f750e8e18ae6 286 SUPERFAMILY SSF103481 190 284 2.35E-7 T 22-04-2016 PP4_RS04905 39d7e8827712b0ae35ba82dbbdbda462 230 SUPERFAMILY SSF52141 8 227 3.27E-94 T 22-04-2016 IPR005122 Uracil-DNA glycosylase-like PP4_RS04905 39d7e8827712b0ae35ba82dbbdbda462 230 TIGRFAM TIGR00628 ung: uracil-DNA glycosylase 11 218 3.4E-83 T 22-04-2016 IPR002043 Uracil-DNA glycosylase GO:0004844|GO:0006281|GO:0006284 PP4_RS04905 39d7e8827712b0ae35ba82dbbdbda462 230 ProSitePatterns PS00130 Uracil-DNA glycosylase signature. 63 72 - T 22-04-2016 IPR018085 Uracil-DNA glycosylase, active site GO:0006281|GO:0016799 PP4_RS04905 39d7e8827712b0ae35ba82dbbdbda462 230 SMART SM00987 55 215 1.2E-36 T 22-04-2016 PP4_RS04905 39d7e8827712b0ae35ba82dbbdbda462 230 SMART SM00986 55 215 1.2E-36 T 22-04-2016 IPR005122 Uracil-DNA glycosylase-like PP4_RS04905 39d7e8827712b0ae35ba82dbbdbda462 230 Gene3D G3DSA:3.40.470.10 7 227 2.9E-101 T 22-04-2016 IPR005122 Uracil-DNA glycosylase-like PP4_RS04905 39d7e8827712b0ae35ba82dbbdbda462 230 PANTHER PTHR11264 9 229 7.0E-136 T 22-04-2016 IPR002043 Uracil-DNA glycosylase GO:0004844|GO:0006281|GO:0006284 PP4_RS04905 39d7e8827712b0ae35ba82dbbdbda462 230 Hamap MF_00148 Uracil-DNA glycosylase [ung]. 10 226 40.447 T 22-04-2016 IPR002043 Uracil-DNA glycosylase GO:0004844|GO:0006281|GO:0006284 PP4_RS04905 39d7e8827712b0ae35ba82dbbdbda462 230 Pfam PF03167 Uracil DNA glycosylase superfamily 60 214 6.3E-24 T 22-04-2016 IPR005122 Uracil-DNA glycosylase-like PP4_RS25925 479acbd63285f2952438f477593b220f 172 PRINTS PR01100 Shikimate kinase family signature 28 41 1.6E-22 T 22-04-2016 PP4_RS25925 479acbd63285f2952438f477593b220f 172 PRINTS PR01100 Shikimate kinase family signature 74 83 1.6E-22 T 22-04-2016 PP4_RS25925 479acbd63285f2952438f477593b220f 172 PRINTS PR01100 Shikimate kinase family signature 95 112 1.6E-22 T 22-04-2016 PP4_RS25925 479acbd63285f2952438f477593b220f 172 PRINTS PR01100 Shikimate kinase family signature 4 19 1.6E-22 T 22-04-2016 PP4_RS25925 479acbd63285f2952438f477593b220f 172 PRINTS PR01100 Shikimate kinase family signature 56 64 1.6E-22 T 22-04-2016 PP4_RS25925 479acbd63285f2952438f477593b220f 172 Gene3D G3DSA:3.40.50.300 2 168 2.8E-54 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25925 479acbd63285f2952438f477593b220f 172 SUPERFAMILY SSF52540 3 166 4.35E-30 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25925 479acbd63285f2952438f477593b220f 172 ProSitePatterns PS01128 Shikimate kinase signature. 57 82 - T 22-04-2016 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 PP4_RS25925 479acbd63285f2952438f477593b220f 172 Pfam PF01202 Shikimate kinase 10 167 7.3E-54 T 22-04-2016 IPR031322 Shikimate kinase/gluconokinase KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 PP4_RS25925 479acbd63285f2952438f477593b220f 172 Hamap MF_00109 Shikimate kinase [aroK]. 1 167 29.68 T 22-04-2016 IPR000623 Shikimate kinase/Threonine synthase-like 1 KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 PP4_RS25925 479acbd63285f2952438f477593b220f 172 PANTHER PTHR21087 2 166 9.8E-64 T 22-04-2016 PP4_RS22705 bfa9cc3de54998edb261f8714ca5d13a 230 PANTHER PTHR24423 11 230 4.4E-16 T 22-04-2016 PP4_RS22705 bfa9cc3de54998edb261f8714ca5d13a 230 PANTHER PTHR24423:SF562 11 230 4.4E-16 T 22-04-2016 PP4_RS22705 bfa9cc3de54998edb261f8714ca5d13a 230 Gene3D G3DSA:3.30.565.10 85 229 2.5E-18 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS22705 bfa9cc3de54998edb261f8714ca5d13a 230 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 126 215 7.1E-9 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS22705 bfa9cc3de54998edb261f8714ca5d13a 230 SUPERFAMILY SSF55874 83 230 5.63E-21 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS22705 bfa9cc3de54998edb261f8714ca5d13a 230 SMART SM00387 121 230 6.0E-4 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS03510 b67240805ea433186e6f3050e7acf7ba 207 SUPERFAMILY SSF69593 16 192 4.97E-30 T 22-04-2016 PP4_RS03510 b67240805ea433186e6f3050e7acf7ba 207 Pfam PF01553 Acyltransferase 35 153 2.1E-15 T 22-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 PP4_RS03510 b67240805ea433186e6f3050e7acf7ba 207 Gene3D G3DSA:3.40.1130.10 37 198 4.0E-12 T 22-04-2016 PP4_RS03510 b67240805ea433186e6f3050e7acf7ba 207 SMART SM00563 34 156 1.7E-15 T 22-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 PP4_RS03510 b67240805ea433186e6f3050e7acf7ba 207 PANTHER PTHR10434:SF21 7 201 3.2E-42 T 22-04-2016 PP4_RS03510 b67240805ea433186e6f3050e7acf7ba 207 PANTHER PTHR10434 7 201 3.2E-42 T 22-04-2016 PP4_RS01805 9a75896aa47782832b0cc3b8ddf612fa 399 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 35 144 5.4E-27 T 22-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 PP4_RS01805 9a75896aa47782832b0cc3b8ddf612fa 399 SUPERFAMILY SSF51735 162 356 1.28E-67 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS01805 9a75896aa47782832b0cc3b8ddf612fa 399 SUPERFAMILY SSF50129 4 188 6.83E-64 T 22-04-2016 IPR011032 GroES-like PP4_RS01805 9a75896aa47782832b0cc3b8ddf612fa 399 TIGRFAM TIGR02819 fdhA_non_GSH: formaldehyde dehydrogenase, glutathione-independent 2 396 1.3E-237 T 22-04-2016 IPR014184 Formaldehyde dehydrogenase, glutathione-independent GO:0016491|GO:0055114 PP4_RS01805 9a75896aa47782832b0cc3b8ddf612fa 399 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 67 81 - T 22-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 PP4_RS01805 9a75896aa47782832b0cc3b8ddf612fa 399 PANTHER PTHR11695 15 395 8.6E-193 T 22-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PP4_RS01805 9a75896aa47782832b0cc3b8ddf612fa 399 Pfam PF00107 Zinc-binding dehydrogenase 197 266 7.4E-10 T 22-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 PP4_RS01805 9a75896aa47782832b0cc3b8ddf612fa 399 Gene3D G3DSA:3.90.180.10 5 188 2.9E-47 T 22-04-2016 IPR011032 GroES-like PP4_RS01805 9a75896aa47782832b0cc3b8ddf612fa 399 PANTHER PTHR11695:SF586 15 395 8.6E-193 T 22-04-2016 PP4_RS01805 9a75896aa47782832b0cc3b8ddf612fa 399 Gene3D G3DSA:3.40.50.720 189 308 1.5E-28 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS08835 c981482607fcee605f37f7305e914aec 456 Gene3D G3DSA:1.10.40.30 390 446 1.4E-31 T 22-04-2016 PP4_RS08835 c981482607fcee605f37f7305e914aec 456 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 12 455 3.9E-131 T 22-04-2016 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 PP4_RS08835 c981482607fcee605f37f7305e914aec 456 PRINTS PR00149 Fumarate lyase superfamily signature 117 135 1.2E-18 T 22-04-2016 IPR000362 Fumarate lyase family PP4_RS08835 c981482607fcee605f37f7305e914aec 456 PRINTS PR00149 Fumarate lyase superfamily signature 163 181 1.2E-18 T 22-04-2016 IPR000362 Fumarate lyase family PP4_RS08835 c981482607fcee605f37f7305e914aec 456 PRINTS PR00149 Fumarate lyase superfamily signature 252 279 1.2E-18 T 22-04-2016 IPR000362 Fumarate lyase family PP4_RS08835 c981482607fcee605f37f7305e914aec 456 PRINTS PR00149 Fumarate lyase superfamily signature 295 311 1.2E-18 T 22-04-2016 IPR000362 Fumarate lyase family PP4_RS08835 c981482607fcee605f37f7305e914aec 456 Gene3D G3DSA:1.10.275.10 1 119 1.1E-46 T 22-04-2016 IPR024083 Fumarase/histidase, N-terminal PP4_RS08835 c981482607fcee605f37f7305e914aec 456 Pfam PF08328 Adenylosuccinate lyase C-terminal 332 446 1.9E-50 T 22-04-2016 IPR013539 Adenylosuccinate lyase PurB, C-terminal GO:0004018|GO:0006188 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 PP4_RS08835 c981482607fcee605f37f7305e914aec 456 PANTHER PTHR11444:SF17 4 456 7.8E-304 T 22-04-2016 PP4_RS08835 c981482607fcee605f37f7305e914aec 456 SUPERFAMILY SSF48557 10 455 2.36E-104 T 22-04-2016 IPR008948 L-Aspartase-like GO:0003824 PP4_RS08835 c981482607fcee605f37f7305e914aec 456 ProSitePatterns PS00163 Fumarate lyases signature. 295 304 - T 22-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 PP4_RS08835 c981482607fcee605f37f7305e914aec 456 Gene3D G3DSA:1.20.200.10 120 389 7.0E-90 T 22-04-2016 PP4_RS08835 c981482607fcee605f37f7305e914aec 456 PANTHER PTHR11444 4 456 7.8E-304 T 22-04-2016 IPR000362 Fumarate lyase family PP4_RS08835 c981482607fcee605f37f7305e914aec 456 Pfam PF00206 Lyase 14 313 2.3E-63 T 22-04-2016 IPR022761 Fumarate lyase, N-terminal PP4_RS26945 bb89c860b8701091d093a42c7e5b6ece 403 PANTHER PTHR14359 2 402 2.6E-190 T 22-04-2016 PP4_RS26945 bb89c860b8701091d093a42c7e5b6ece 403 SUPERFAMILY SSF52507 1 178 4.84E-61 T 22-04-2016 IPR003382 Flavoprotein GO:0003824 PP4_RS26945 bb89c860b8701091d093a42c7e5b6ece 403 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 6 395 4.5E-142 T 22-04-2016 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|UniPathway: UPA00241|UniPathway: UPA00241 PP4_RS26945 bb89c860b8701091d093a42c7e5b6ece 403 Gene3D G3DSA:3.40.50.10300 187 401 5.7E-88 T 22-04-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 PP4_RS26945 bb89c860b8701091d093a42c7e5b6ece 403 Gene3D G3DSA:3.40.50.1950 2 186 3.4E-66 T 22-04-2016 IPR003382 Flavoprotein GO:0003824 PP4_RS26945 bb89c860b8701091d093a42c7e5b6ece 403 PANTHER PTHR14359:SF20 2 402 2.6E-190 T 22-04-2016 PP4_RS26945 bb89c860b8701091d093a42c7e5b6ece 403 Pfam PF02441 Flavoprotein 7 135 9.0E-33 T 22-04-2016 IPR003382 Flavoprotein GO:0003824 PP4_RS26945 bb89c860b8701091d093a42c7e5b6ece 403 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 186 370 7.5E-71 T 22-04-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 PP4_RS26945 bb89c860b8701091d093a42c7e5b6ece 403 SUPERFAMILY SSF102645 184 401 2.22E-76 T 22-04-2016 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|UniPathway: UPA00241 PP4_RS17195 309c33ba206907178e0084d7bc32bdce 298 SUPERFAMILY SSF46785 5 87 9.89E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS17195 309c33ba206907178e0084d7bc32bdce 298 SUPERFAMILY SSF53850 90 292 1.81E-45 T 22-04-2016 PP4_RS17195 309c33ba206907178e0084d7bc32bdce 298 Gene3D G3DSA:1.10.10.10 5 87 1.4E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS17195 309c33ba206907178e0084d7bc32bdce 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 62 2.4E-17 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS17195 309c33ba206907178e0084d7bc32bdce 298 Gene3D G3DSA:3.40.190.10 93 176 2.2E-22 T 22-04-2016 PP4_RS17195 309c33ba206907178e0084d7bc32bdce 298 PANTHER PTHR30537 1 292 1.2E-113 T 22-04-2016 PP4_RS17195 309c33ba206907178e0084d7bc32bdce 298 PANTHER PTHR30537:SF5 1 292 1.2E-113 T 22-04-2016 PP4_RS17195 309c33ba206907178e0084d7bc32bdce 298 Gene3D G3DSA:3.40.190.10 177 259 2.8E-7 T 22-04-2016 PP4_RS17195 309c33ba206907178e0084d7bc32bdce 298 Pfam PF03466 LysR substrate binding domain 88 291 6.3E-45 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS25605 559c681c54f432e3aa1d9987bd9cddae 540 Gene3D G3DSA:3.90.1200.10 253 298 4.6E-4 T 22-04-2016 PP4_RS25605 559c681c54f432e3aa1d9987bd9cddae 540 PANTHER PTHR10566:SF79 6 447 6.5E-259 T 22-04-2016 PP4_RS25605 559c681c54f432e3aa1d9987bd9cddae 540 Pfam PF03109 ABC1 family 115 233 6.8E-35 T 22-04-2016 IPR004147 UbiB domain PP4_RS25605 559c681c54f432e3aa1d9987bd9cddae 540 Hamap MF_00414 Probable protein kinase UbiB [ubiB]. 3 540 52.412 T 22-04-2016 IPR010232 Probable protein kinase UbiB GO:0006744 UniPathway: UPA00232 PP4_RS25605 559c681c54f432e3aa1d9987bd9cddae 540 PANTHER PTHR10566 6 447 6.5E-259 T 22-04-2016 PP4_RS25605 559c681c54f432e3aa1d9987bd9cddae 540 TIGRFAM TIGR01982 UbiB: 2-polyprenylphenol 6-hydroxylase 7 447 1.6E-176 T 22-04-2016 IPR010232 Probable protein kinase UbiB GO:0006744 UniPathway: UPA00232 PP4_RS25605 559c681c54f432e3aa1d9987bd9cddae 540 SUPERFAMILY SSF56112 97 160 4.57E-48 T 22-04-2016 IPR011009 Protein kinase-like domain PP4_RS25605 559c681c54f432e3aa1d9987bd9cddae 540 SUPERFAMILY SSF56112 195 438 4.57E-48 T 22-04-2016 IPR011009 Protein kinase-like domain PP4_RS02085 96d1f3e298b82e812c45bfa7efee012a 264 SUPERFAMILY SSF56317 1 256 1.44E-76 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PP4_RS02085 96d1f3e298b82e812c45bfa7efee012a 264 Pfam PF00795 Carbon-nitrogen hydrolase 2 244 3.7E-54 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PP4_RS02085 96d1f3e298b82e812c45bfa7efee012a 264 Gene3D G3DSA:3.60.110.10 1 259 4.4E-78 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PP4_RS02085 96d1f3e298b82e812c45bfa7efee012a 264 PANTHER PTHR23088 1 259 2.4E-69 T 22-04-2016 PP4_RS02085 96d1f3e298b82e812c45bfa7efee012a 264 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 142 162 - T 22-04-2016 IPR001110 Uncharacterised protein family UPF0012, conserved site PP4_RS04435 e2c534b373624b501da66f76cce588ee 97 Gene3D G3DSA:2.30.33.40 1 96 3.9E-35 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 PP4_RS04435 e2c534b373624b501da66f76cce588ee 97 SUPERFAMILY SSF50129 1 96 1.13E-33 T 22-04-2016 IPR011032 GroES-like PP4_RS04435 e2c534b373624b501da66f76cce588ee 97 Hamap MF_00580 10 kDa chaperonin [groS]. 2 96 26.734 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 PP4_RS04435 e2c534b373624b501da66f76cce588ee 97 SMART SM00883 2 95 7.8E-56 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 PP4_RS04435 e2c534b373624b501da66f76cce588ee 97 PRINTS PR00297 10kDa chaperonin signature 25 46 2.7E-31 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 PP4_RS04435 e2c534b373624b501da66f76cce588ee 97 PRINTS PR00297 10kDa chaperonin signature 82 95 2.7E-31 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 PP4_RS04435 e2c534b373624b501da66f76cce588ee 97 PRINTS PR00297 10kDa chaperonin signature 3 18 2.7E-31 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 PP4_RS04435 e2c534b373624b501da66f76cce588ee 97 PRINTS PR00297 10kDa chaperonin signature 60 72 2.7E-31 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 PP4_RS04435 e2c534b373624b501da66f76cce588ee 97 PANTHER PTHR10772 1 96 1.4E-41 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 PP4_RS04435 e2c534b373624b501da66f76cce588ee 97 Pfam PF00166 Chaperonin 10 Kd subunit 2 95 3.2E-32 T 22-04-2016 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 PP4_RS04435 e2c534b373624b501da66f76cce588ee 97 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 22-04-2016 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 PP4_RS18460 a2e43302970f16c9adb4d55212bf5fbe 156 PANTHER PTHR34186 1 156 7.6E-70 T 22-04-2016 PP4_RS18460 a2e43302970f16c9adb4d55212bf5fbe 156 SMART SM01116 83 156 3.2E-47 T 22-04-2016 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 PP4_RS18460 a2e43302970f16c9adb4d55212bf5fbe 156 Gene3D G3DSA:1.10.260.40 1 86 7.6E-30 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS18460 a2e43302970f16c9adb4d55212bf5fbe 156 PRINTS PR01693 Cyanase signature 42 59 3.3E-33 T 22-04-2016 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 PP4_RS18460 a2e43302970f16c9adb4d55212bf5fbe 156 PRINTS PR01693 Cyanase signature 22 37 3.3E-33 T 22-04-2016 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 PP4_RS18460 a2e43302970f16c9adb4d55212bf5fbe 156 PRINTS PR01693 Cyanase signature 91 105 3.3E-33 T 22-04-2016 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 PP4_RS18460 a2e43302970f16c9adb4d55212bf5fbe 156 PRINTS PR01693 Cyanase signature 141 151 3.3E-33 T 22-04-2016 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 PP4_RS18460 a2e43302970f16c9adb4d55212bf5fbe 156 PRINTS PR01693 Cyanase signature 109 125 3.3E-33 T 22-04-2016 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 PP4_RS18460 a2e43302970f16c9adb4d55212bf5fbe 156 TIGRFAM TIGR00673 cynS: cyanase 1 156 2.5E-63 T 22-04-2016 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 PP4_RS18460 a2e43302970f16c9adb4d55212bf5fbe 156 Hamap MF_00535 Cyanate hydratase [cynS]. 1 156 79.486 T 22-04-2016 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 PP4_RS18460 a2e43302970f16c9adb4d55212bf5fbe 156 SUPERFAMILY SSF55234 88 155 3.01E-29 T 22-04-2016 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 PP4_RS18460 a2e43302970f16c9adb4d55212bf5fbe 156 PANTHER PTHR34186:SF2 1 156 7.6E-70 T 22-04-2016 PP4_RS18460 a2e43302970f16c9adb4d55212bf5fbe 156 Gene3D G3DSA:3.30.1160.10 89 156 2.3E-36 T 22-04-2016 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 PP4_RS18460 a2e43302970f16c9adb4d55212bf5fbe 156 PIRSF PIRSF001263 3 156 7.9E-63 T 22-04-2016 IPR008076 Cyanate hydratase GO:0008824|GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 PP4_RS18460 a2e43302970f16c9adb4d55212bf5fbe 156 Pfam PF02560 Cyanate lyase C-terminal domain 88 154 1.9E-32 T 22-04-2016 IPR003712 Cyanate lyase, C-terminal GO:0009439 KEGG: 00400+4.2.1.10|KEGG: 00910+4.2.1.104|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707 PP4_RS18460 a2e43302970f16c9adb4d55212bf5fbe 156 SUPERFAMILY SSF47413 1 85 2.74E-19 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS19335 34177b8711c9cbed4e41516e60074a04 254 PANTHER PTHR10108 8 249 1.5E-97 T 22-04-2016 PP4_RS19335 34177b8711c9cbed4e41516e60074a04 254 Gene3D G3DSA:3.40.50.150 37 252 2.1E-50 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS19335 34177b8711c9cbed4e41516e60074a04 254 SUPERFAMILY SSF53335 11 243 2.17E-48 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS19335 34177b8711c9cbed4e41516e60074a04 254 PANTHER PTHR10108:SF835 8 249 1.5E-97 T 22-04-2016 PP4_RS19335 34177b8711c9cbed4e41516e60074a04 254 Pfam PF08241 Methyltransferase domain 49 145 1.2E-24 T 22-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 PP4_RS17790 0ca4e09fb57653556270bdc61aa8de10 628 SUPERFAMILY SSF58104 319 628 2.62E-76 T 22-04-2016 PP4_RS17790 0ca4e09fb57653556270bdc61aa8de10 628 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 425 626 3.8E-48 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS17790 0ca4e09fb57653556270bdc61aa8de10 628 Gene3D G3DSA:1.10.287.950 380 597 1.8E-56 T 22-04-2016 PP4_RS17790 0ca4e09fb57653556270bdc61aa8de10 628 SUPERFAMILY SSF103190 93 184 2.35E-8 T 22-04-2016 IPR029151 Periplasmic sensor domain-like PP4_RS17790 0ca4e09fb57653556270bdc61aa8de10 628 Pfam PF00672 HAMP domain 278 347 1.3E-11 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS17790 0ca4e09fb57653556270bdc61aa8de10 628 PANTHER PTHR32089 16 628 1.2E-260 T 22-04-2016 PP4_RS17790 0ca4e09fb57653556270bdc61aa8de10 628 SMART SM00283 366 627 5.9E-88 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS17790 0ca4e09fb57653556270bdc61aa8de10 628 Pfam PF02743 Cache domain 34 258 8.0E-36 T 22-04-2016 IPR033479 Double Cache domain 1 PP4_RS17790 0ca4e09fb57653556270bdc61aa8de10 628 Gene3D G3DSA:3.30.450.20 139 274 1.0E-32 T 22-04-2016 PP4_RS17790 0ca4e09fb57653556270bdc61aa8de10 628 SMART SM00304 297 351 3.8E-12 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS17790 0ca4e09fb57653556270bdc61aa8de10 628 SMART SM00304 386 446 58.0 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS17790 0ca4e09fb57653556270bdc61aa8de10 628 PANTHER PTHR32089:SF39 16 628 1.2E-260 T 22-04-2016 PP4_RS15550 8a393709d2dbf395c166c87aac87cb42 254 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 251 3.4E-75 T 22-04-2016 PP4_RS15550 8a393709d2dbf395c166c87aac87cb42 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.0E-44 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15550 8a393709d2dbf395c166c87aac87cb42 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 1.0E-44 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15550 8a393709d2dbf395c166c87aac87cb42 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.0E-44 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15550 8a393709d2dbf395c166c87aac87cb42 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 1.0E-44 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15550 8a393709d2dbf395c166c87aac87cb42 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 1.0E-44 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15550 8a393709d2dbf395c166c87aac87cb42 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.0E-44 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15550 8a393709d2dbf395c166c87aac87cb42 254 SUPERFAMILY SSF51735 6 253 2.97E-87 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS15550 8a393709d2dbf395c166c87aac87cb42 254 PANTHER PTHR24322:SF242 12 141 6.3E-57 T 22-04-2016 PP4_RS15550 8a393709d2dbf395c166c87aac87cb42 254 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 197 3.6E-4 T 22-04-2016 PP4_RS15550 8a393709d2dbf395c166c87aac87cb42 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 2.0E-10 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15550 8a393709d2dbf395c166c87aac87cb42 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 2.0E-10 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15550 8a393709d2dbf395c166c87aac87cb42 254 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 2.0E-10 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15550 8a393709d2dbf395c166c87aac87cb42 254 PANTHER PTHR24322 157 191 6.3E-57 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15550 8a393709d2dbf395c166c87aac87cb42 254 PANTHER PTHR24322 12 141 6.3E-57 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15550 8a393709d2dbf395c166c87aac87cb42 254 PANTHER PTHR24322:SF242 157 191 6.3E-57 T 22-04-2016 PP4_RS15550 8a393709d2dbf395c166c87aac87cb42 254 Gene3D G3DSA:3.40.50.720 3 253 7.6E-91 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS06710 0f075bd4d9e2622705d30cb9c57caeff 446 PANTHER PTHR24423 54 70 3.7E-60 T 22-04-2016 PP4_RS06710 0f075bd4d9e2622705d30cb9c57caeff 446 Pfam PF00672 HAMP domain 155 223 1.8E-11 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS06710 0f075bd4d9e2622705d30cb9c57caeff 446 Pfam PF00512 His Kinase A (phospho-acceptor) domain 228 291 2.8E-11 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS06710 0f075bd4d9e2622705d30cb9c57caeff 446 Gene3D G3DSA:3.30.565.10 294 443 1.9E-36 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS06710 0f075bd4d9e2622705d30cb9c57caeff 446 PANTHER PTHR24423 166 444 3.7E-60 T 22-04-2016 PP4_RS06710 0f075bd4d9e2622705d30cb9c57caeff 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 402 420 2.8E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS06710 0f075bd4d9e2622705d30cb9c57caeff 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 370 384 2.8E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS06710 0f075bd4d9e2622705d30cb9c57caeff 446 PRINTS PR00344 Bacterial sensor protein C-terminal signature 388 398 2.8E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS06710 0f075bd4d9e2622705d30cb9c57caeff 446 PANTHER PTHR24423:SF477 166 444 3.7E-60 T 22-04-2016 PP4_RS06710 0f075bd4d9e2622705d30cb9c57caeff 446 SUPERFAMILY SSF47384 211 292 1.51E-13 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS06710 0f075bd4d9e2622705d30cb9c57caeff 446 PANTHER PTHR24423:SF477 54 70 3.7E-60 T 22-04-2016 PP4_RS06710 0f075bd4d9e2622705d30cb9c57caeff 446 SMART SM00387 333 442 1.4E-25 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS06710 0f075bd4d9e2622705d30cb9c57caeff 446 SMART SM00304 172 227 1.6E-5 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS06710 0f075bd4d9e2622705d30cb9c57caeff 446 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 338 441 3.8E-16 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS06710 0f075bd4d9e2622705d30cb9c57caeff 446 SUPERFAMILY SSF158472 173 226 1.96E-6 T 22-04-2016 PP4_RS06710 0f075bd4d9e2622705d30cb9c57caeff 446 SMART SM00388 228 292 2.2E-13 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS06710 0f075bd4d9e2622705d30cb9c57caeff 446 Gene3D G3DSA:1.10.287.130 220 288 1.5E-13 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS06710 0f075bd4d9e2622705d30cb9c57caeff 446 SUPERFAMILY SSF55874 282 440 2.1E-35 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS11040 41987f8fc001d68e53540294a73d433e 129 PANTHER PTHR33570 3 128 2.9E-56 T 22-04-2016 PP4_RS11040 41987f8fc001d68e53540294a73d433e 129 PANTHER PTHR33570:SF2 3 128 2.9E-56 T 22-04-2016 PP4_RS11040 41987f8fc001d68e53540294a73d433e 129 Pfam PF02627 Carboxymuconolactone decarboxylase family 36 118 2.0E-22 T 22-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 PP4_RS11040 41987f8fc001d68e53540294a73d433e 129 SUPERFAMILY SSF69118 4 122 1.7E-36 T 22-04-2016 IPR029032 AhpD-like PP4_RS11040 41987f8fc001d68e53540294a73d433e 129 Gene3D G3DSA:1.20.1290.10 3 126 3.5E-33 T 22-04-2016 IPR029032 AhpD-like PP4_RS23770 25d2e79852446e15aa5bfb9df08445b6 134 Pfam PF01475 Ferric uptake regulator family 9 129 3.2E-43 T 22-04-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 PP4_RS23770 25d2e79852446e15aa5bfb9df08445b6 134 Gene3D G3DSA:1.10.10.10 5 81 2.0E-30 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS23770 25d2e79852446e15aa5bfb9df08445b6 134 SUPERFAMILY SSF46785 6 131 3.56E-39 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS23770 25d2e79852446e15aa5bfb9df08445b6 134 PANTHER PTHR33202 6 129 1.9E-36 T 22-04-2016 PP4_RS01405 f84ab45a00c31c56fc06419ff7ce13d8 146 Pfam PF03061 Thioesterase superfamily 26 107 3.0E-4 T 22-04-2016 IPR006683 Thioesterase domain PP4_RS01405 f84ab45a00c31c56fc06419ff7ce13d8 146 PANTHER PTHR31793:SF7 3 146 1.2E-28 T 22-04-2016 PP4_RS01405 f84ab45a00c31c56fc06419ff7ce13d8 146 PANTHER PTHR31793 3 146 1.2E-28 T 22-04-2016 PP4_RS01405 f84ab45a00c31c56fc06419ff7ce13d8 146 SUPERFAMILY SSF54637 7 137 2.83E-24 T 22-04-2016 IPR029069 HotDog domain PP4_RS01405 f84ab45a00c31c56fc06419ff7ce13d8 146 Gene3D G3DSA:3.10.129.10 4 139 5.7E-30 T 22-04-2016 IPR029069 HotDog domain PP4_RS09730 3143f99d06ac1174c9436afdde541a01 640 PANTHER PTHR11451 1 640 0.0 T 22-04-2016 PP4_RS09730 3143f99d06ac1174c9436afdde541a01 640 Gene3D G3DSA:3.10.20.30 1 64 2.9E-22 T 22-04-2016 IPR012675 Beta-grasp domain PP4_RS09730 3143f99d06ac1174c9436afdde541a01 640 SUPERFAMILY SSF52954 528 632 8.31E-31 T 22-04-2016 IPR004154 Anticodon-binding PP4_RS09730 3143f99d06ac1174c9436afdde541a01 640 PANTHER PTHR11451:SF31 1 640 0.0 T 22-04-2016 PP4_RS09730 3143f99d06ac1174c9436afdde541a01 640 Pfam PF03129 Anticodon binding domain 540 628 6.9E-21 T 22-04-2016 IPR004154 Anticodon-binding PP4_RS09730 3143f99d06ac1174c9436afdde541a01 640 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 320 528 2.0E-44 T 22-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS09730 3143f99d06ac1174c9436afdde541a01 640 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 72 629 7.3E-222 T 22-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 PP4_RS09730 3143f99d06ac1174c9436afdde541a01 640 Gene3D G3DSA:3.30.980.10 65 129 7.6E-41 T 22-04-2016 PP4_RS09730 3143f99d06ac1174c9436afdde541a01 640 Gene3D G3DSA:3.30.980.10 187 223 7.6E-41 T 22-04-2016 PP4_RS09730 3143f99d06ac1174c9436afdde541a01 640 Gene3D G3DSA:3.30.930.10 241 529 1.1E-121 T 22-04-2016 PP4_RS09730 3143f99d06ac1174c9436afdde541a01 640 Gene3D G3DSA:3.40.50.800 530 634 2.0E-33 T 22-04-2016 IPR004154 Anticodon-binding PP4_RS09730 3143f99d06ac1174c9436afdde541a01 640 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 66 633 33.723 T 22-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 PP4_RS09730 3143f99d06ac1174c9436afdde541a01 640 SUPERFAMILY SSF55186 63 240 9.42E-64 T 22-04-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 PP4_RS09730 3143f99d06ac1174c9436afdde541a01 640 SUPERFAMILY SSF55681 242 525 9.19E-99 T 22-04-2016 PP4_RS09730 3143f99d06ac1174c9436afdde541a01 640 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 172 218 4.7E-14 T 22-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 PP4_RS09730 3143f99d06ac1174c9436afdde541a01 640 Pfam PF02824 TGS domain 4 61 1.2E-10 T 22-04-2016 IPR004095 TGS KEGG: 00970+6.1.1.3 PP4_RS09730 3143f99d06ac1174c9436afdde541a01 640 SUPERFAMILY SSF81271 3 61 4.25E-15 T 22-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 PP4_RS09730 3143f99d06ac1174c9436afdde541a01 640 Gene3D G3DSA:3.30.54.20 130 186 6.0E-19 T 22-04-2016 PP4_RS09730 3143f99d06ac1174c9436afdde541a01 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 328 356 2.1E-51 T 22-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 PP4_RS09730 3143f99d06ac1174c9436afdde541a01 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 463 491 2.1E-51 T 22-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 PP4_RS09730 3143f99d06ac1174c9436afdde541a01 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 506 519 2.1E-51 T 22-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 PP4_RS09730 3143f99d06ac1174c9436afdde541a01 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 361 384 2.1E-51 T 22-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 PP4_RS09730 3143f99d06ac1174c9436afdde541a01 640 PRINTS PR01047 Threonyl-tRNA synthetase signature 533 545 2.1E-51 T 22-04-2016 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 PP4_RS09730 3143f99d06ac1174c9436afdde541a01 640 SMART SM00863 169 218 1.2E-20 T 22-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 PP4_RS16665 3a9c11b2693a92d9c8719d3b1023e17d 399 Gene3D G3DSA:3.20.20.30 41 275 1.3E-75 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS16665 3a9c11b2693a92d9c8719d3b1023e17d 399 Gene3D G3DSA:3.20.20.30 314 379 1.3E-75 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS16665 3a9c11b2693a92d9c8719d3b1023e17d 399 Pfam PF00296 Luciferase-like monooxygenase 48 352 2.6E-61 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS16665 3a9c11b2693a92d9c8719d3b1023e17d 399 PANTHER PTHR30011:SF1 51 380 4.0E-67 T 22-04-2016 PP4_RS16665 3a9c11b2693a92d9c8719d3b1023e17d 399 PANTHER PTHR30011 51 380 4.0E-67 T 22-04-2016 PP4_RS16665 3a9c11b2693a92d9c8719d3b1023e17d 399 SUPERFAMILY SSF51679 42 378 1.83E-69 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS10140 790da5bcaad25a9371a6ba99ed4d91ae 288 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 5 287 46.819 T 22-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PP4_RS10140 790da5bcaad25a9371a6ba99ed4d91ae 288 SUPERFAMILY SSF53328 92 287 1.07E-59 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PP4_RS10140 790da5bcaad25a9371a6ba99ed4d91ae 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 115 142 1.2E-50 T 22-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PP4_RS10140 790da5bcaad25a9371a6ba99ed4d91ae 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 261 286 1.2E-50 T 22-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PP4_RS10140 790da5bcaad25a9371a6ba99ed4d91ae 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 42 54 1.2E-50 T 22-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PP4_RS10140 790da5bcaad25a9371a6ba99ed4d91ae 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 239 261 1.2E-50 T 22-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PP4_RS10140 790da5bcaad25a9371a6ba99ed4d91ae 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 93 115 1.2E-50 T 22-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PP4_RS10140 790da5bcaad25a9371a6ba99ed4d91ae 288 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 10 36 1.2E-50 T 22-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PP4_RS10140 790da5bcaad25a9371a6ba99ed4d91ae 288 Gene3D G3DSA:3.40.50.170 92 287 4.9E-53 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PP4_RS10140 790da5bcaad25a9371a6ba99ed4d91ae 288 SUPERFAMILY SSF55021 7 87 2.91E-15 T 22-04-2016 PP4_RS10140 790da5bcaad25a9371a6ba99ed4d91ae 288 PANTHER PTHR10520 6 281 1.1E-140 T 22-04-2016 PP4_RS10140 790da5bcaad25a9371a6ba99ed4d91ae 288 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 9 287 2.4E-101 T 22-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PP4_RS10140 790da5bcaad25a9371a6ba99ed4d91ae 288 Gene3D G3DSA:3.30.70.260 4 87 4.5E-21 T 22-04-2016 PP4_RS10140 790da5bcaad25a9371a6ba99ed4d91ae 288 PANTHER PTHR10520:SF7 6 281 1.1E-140 T 22-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PP4_RS10140 790da5bcaad25a9371a6ba99ed4d91ae 288 PIRSF PIRSF036480 5 288 2.3E-108 T 22-04-2016 PP4_RS10140 790da5bcaad25a9371a6ba99ed4d91ae 288 Pfam PF00551 Formyl transferase 92 269 1.2E-34 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PP4_RS10975 82dfacf37cc105ad8e0bd3b455784126 309 Pfam PF00892 EamA-like transporter family 160 292 1.8E-20 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS10975 82dfacf37cc105ad8e0bd3b455784126 309 Pfam PF00892 EamA-like transporter family 19 149 1.1E-8 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS10975 82dfacf37cc105ad8e0bd3b455784126 309 PANTHER PTHR22911 24 301 4.0E-44 T 22-04-2016 PP4_RS10975 82dfacf37cc105ad8e0bd3b455784126 309 SUPERFAMILY SSF103481 197 296 1.57E-14 T 22-04-2016 PP4_RS10975 82dfacf37cc105ad8e0bd3b455784126 309 PANTHER PTHR22911:SF23 24 301 4.0E-44 T 22-04-2016 PP4_RS10975 82dfacf37cc105ad8e0bd3b455784126 309 SUPERFAMILY SSF103481 58 149 9.55E-5 T 22-04-2016 PP4_RS27360 bfce708ea354ffd6c70be7c34a5bc74f 455 Pfam PF12804 MobA-like NTP transferase domain 6 126 2.3E-23 T 22-04-2016 IPR025877 MobA-like NTP transferase PP4_RS27360 bfce708ea354ffd6c70be7c34a5bc74f 455 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 2 449 42.467 T 22-04-2016 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00113|UniPathway: UPA00113|UniPathway: UPA00973 PP4_RS27360 bfce708ea354ffd6c70be7c34a5bc74f 455 SUPERFAMILY SSF53448 1 249 3.15E-63 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS27360 bfce708ea354ffd6c70be7c34a5bc74f 455 Gene3D G3DSA:2.160.10.10 320 449 7.7E-31 T 22-04-2016 PP4_RS27360 bfce708ea354ffd6c70be7c34a5bc74f 455 Gene3D G3DSA:3.90.550.10 1 245 2.0E-70 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS27360 bfce708ea354ffd6c70be7c34a5bc74f 455 SUPERFAMILY SSF51161 252 438 2.86E-45 T 22-04-2016 IPR011004 Trimeric LpxA-like PP4_RS27360 bfce708ea354ffd6c70be7c34a5bc74f 455 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 392 425 1.2E-4 T 22-04-2016 IPR001451 Hexapeptide repeat PP4_RS27360 bfce708ea354ffd6c70be7c34a5bc74f 455 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 263 297 2.1E-7 T 22-04-2016 IPR001451 Hexapeptide repeat PP4_RS27360 bfce708ea354ffd6c70be7c34a5bc74f 455 PANTHER PTHR22572:SF115 4 446 6.5E-215 T 22-04-2016 PP4_RS27360 bfce708ea354ffd6c70be7c34a5bc74f 455 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 4 451 5.1E-196 T 22-04-2016 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5514|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00113|UniPathway: UPA00113|UniPathway: UPA00973 PP4_RS27360 bfce708ea354ffd6c70be7c34a5bc74f 455 Gene3D G3DSA:2.160.10.10 246 319 7.5E-16 T 22-04-2016 PP4_RS27360 bfce708ea354ffd6c70be7c34a5bc74f 455 PANTHER PTHR22572 4 446 6.5E-215 T 22-04-2016 PP4_RS21070 b6ea28621162a4714fecbb37a2f7ef55 99 PANTHER PTHR36924:SF1 2 90 3.9E-35 T 22-04-2016 PP4_RS21070 b6ea28621162a4714fecbb37a2f7ef55 99 Gene3D G3DSA:1.10.260.40 3 90 1.1E-30 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS21070 b6ea28621162a4714fecbb37a2f7ef55 99 SUPERFAMILY SSF47413 10 91 4.46E-24 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS21070 b6ea28621162a4714fecbb37a2f7ef55 99 SMART SM00530 14 70 8.8E-4 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS21070 b6ea28621162a4714fecbb37a2f7ef55 99 PANTHER PTHR36924 2 90 3.9E-35 T 22-04-2016 PP4_RS21070 b6ea28621162a4714fecbb37a2f7ef55 99 Pfam PF01381 Helix-turn-helix 21 69 7.4E-6 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS21070 b6ea28621162a4714fecbb37a2f7ef55 99 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 6 85 2.9E-31 T 22-04-2016 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 PP4_RS26855 3f5d615be3425598903acfc5c5edf62d 618 Pfam PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain 341 504 1.3E-43 T 22-04-2016 IPR026888 Acetyl-CoA hydrolase/transferase C-terminal domain PP4_RS26855 3f5d615be3425598903acfc5c5edf62d 618 PANTHER PTHR21432:SF18 92 274 1.8E-153 T 22-04-2016 PP4_RS26855 3f5d615be3425598903acfc5c5edf62d 618 PANTHER PTHR21432:SF18 3 63 1.8E-153 T 22-04-2016 PP4_RS26855 3f5d615be3425598903acfc5c5edf62d 618 PANTHER PTHR21432:SF18 307 559 1.8E-153 T 22-04-2016 PP4_RS26855 3f5d615be3425598903acfc5c5edf62d 618 SUPERFAMILY SSF100950 299 533 6.91E-48 T 22-04-2016 PP4_RS26855 3f5d615be3425598903acfc5c5edf62d 618 SUPERFAMILY SSF100950 223 267 6.91E-48 T 22-04-2016 PP4_RS26855 3f5d615be3425598903acfc5c5edf62d 618 Gene3D G3DSA:3.30.750.70 302 355 3.2E-35 T 22-04-2016 PP4_RS26855 3f5d615be3425598903acfc5c5edf62d 618 Gene3D G3DSA:3.30.750.70 223 268 3.2E-35 T 22-04-2016 PP4_RS26855 3f5d615be3425598903acfc5c5edf62d 618 PANTHER PTHR21432 92 274 1.8E-153 T 22-04-2016 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 PP4_RS26855 3f5d615be3425598903acfc5c5edf62d 618 PANTHER PTHR21432 3 63 1.8E-153 T 22-04-2016 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 PP4_RS26855 3f5d615be3425598903acfc5c5edf62d 618 PANTHER PTHR21432 307 559 1.8E-153 T 22-04-2016 IPR003702 Acetyl-CoA hydrolase/transferase GO:0003824|GO:0006084 PP4_RS26855 3f5d615be3425598903acfc5c5edf62d 618 Gene3D G3DSA:3.40.810.20 388 481 2.5E-7 T 22-04-2016 PP4_RS22170 6347c72874ee86c9e50bd1d66a7b6b3f 304 Gene3D G3DSA:3.40.190.10 25 127 1.4E-51 T 22-04-2016 PP4_RS22170 6347c72874ee86c9e50bd1d66a7b6b3f 304 Gene3D G3DSA:3.40.190.10 243 298 1.4E-51 T 22-04-2016 PP4_RS22170 6347c72874ee86c9e50bd1d66a7b6b3f 304 PANTHER PTHR30177 27 299 9.2E-94 T 22-04-2016 PP4_RS22170 6347c72874ee86c9e50bd1d66a7b6b3f 304 Gene3D G3DSA:3.40.190.120 128 236 3.7E-32 T 22-04-2016 PP4_RS22170 6347c72874ee86c9e50bd1d66a7b6b3f 304 PANTHER PTHR30177:SF9 27 299 9.2E-94 T 22-04-2016 PP4_RS22170 6347c72874ee86c9e50bd1d66a7b6b3f 304 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 27 295 3.6E-65 T 22-04-2016 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 PP4_RS22170 6347c72874ee86c9e50bd1d66a7b6b3f 304 SUPERFAMILY SSF53850 27 298 1.09E-64 T 22-04-2016 PP4_RS19840 295379939a2cc755a6627b9c7f2de9d3 323 Gene3D G3DSA:1.20.58.340 248 323 7.6E-23 T 22-04-2016 PP4_RS19840 295379939a2cc755a6627b9c7f2de9d3 323 PANTHER PTHR21535 18 323 2.9E-55 T 22-04-2016 PP4_RS19840 295379939a2cc755a6627b9c7f2de9d3 323 Gene3D G3DSA:3.30.460.20 5 132 1.7E-32 T 22-04-2016 PP4_RS19840 295379939a2cc755a6627b9c7f2de9d3 323 PANTHER PTHR21535:SF33 18 323 2.9E-55 T 22-04-2016 PP4_RS19840 295379939a2cc755a6627b9c7f2de9d3 323 Pfam PF01544 CorA-like Mg2+ transporter protein 33 319 4.2E-58 T 22-04-2016 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 PP4_RS19840 295379939a2cc755a6627b9c7f2de9d3 323 SUPERFAMILY SSF143865 5 250 2.48E-69 T 22-04-2016 PP4_RS19840 295379939a2cc755a6627b9c7f2de9d3 323 Gene3D G3DSA:1.20.58.340 133 244 3.0E-36 T 22-04-2016 PP4_RS19840 295379939a2cc755a6627b9c7f2de9d3 323 SUPERFAMILY SSF144083 258 320 6.54E-17 T 22-04-2016 PP4_RS20080 35dbb4d6f66ac7b8fccbe479388b8fb9 363 PANTHER PTHR12526 78 363 9.0E-29 T 22-04-2016 PP4_RS20080 35dbb4d6f66ac7b8fccbe479388b8fb9 363 Gene3D G3DSA:3.40.50.2000 185 341 3.1E-15 T 22-04-2016 PP4_RS20080 35dbb4d6f66ac7b8fccbe479388b8fb9 363 Pfam PF00534 Glycosyl transferases group 1 185 341 4.2E-21 T 22-04-2016 IPR001296 Glycosyl transferase, family 1 PP4_RS20080 35dbb4d6f66ac7b8fccbe479388b8fb9 363 Pfam PF13439 Glycosyltransferase Family 4 14 167 3.5E-9 T 22-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain PP4_RS20080 35dbb4d6f66ac7b8fccbe479388b8fb9 363 SUPERFAMILY SSF53756 6 362 3.28E-44 T 22-04-2016 PP4_RS06160 a8167c187ff7ba98afb4db15ad4fa838 393 Gene3D G3DSA:3.90.1150.10 254 389 1.7E-49 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS06160 a8167c187ff7ba98afb4db15ad4fa838 393 SUPERFAMILY SSF53383 32 389 2.61E-107 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS06160 a8167c187ff7ba98afb4db15ad4fa838 393 PANTHER PTHR11808 10 392 5.1E-172 T 22-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 PP4_RS06160 a8167c187ff7ba98afb4db15ad4fa838 393 PIRSF PIRSF001434 1 391 1.2E-135 T 22-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 PP4_RS06160 a8167c187ff7ba98afb4db15ad4fa838 393 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 14 388 2.6E-135 T 22-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 PP4_RS06160 a8167c187ff7ba98afb4db15ad4fa838 393 Gene3D G3DSA:3.40.640.10 11 253 3.7E-83 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS06160 a8167c187ff7ba98afb4db15ad4fa838 393 PANTHER PTHR11808:SF15 10 392 5.1E-172 T 22-04-2016 PP4_RS09205 2f21037ba3e0ae27018d3f20019a1ab0 152 Hamap MF_00984 Single-stranded DNA-binding protein. 5 115 35.448 T 22-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 PP4_RS09205 2f21037ba3e0ae27018d3f20019a1ab0 152 PANTHER PTHR10302 1 152 1.9E-44 T 22-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 PP4_RS09205 2f21037ba3e0ae27018d3f20019a1ab0 152 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 2 143 3.5E-50 T 22-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 PP4_RS09205 2f21037ba3e0ae27018d3f20019a1ab0 152 Gene3D G3DSA:2.40.50.140 2 145 3.8E-52 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS09205 2f21037ba3e0ae27018d3f20019a1ab0 152 PIRSF PIRSF002070 1 152 8.1E-34 T 22-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 PP4_RS09205 2f21037ba3e0ae27018d3f20019a1ab0 152 SUPERFAMILY SSF50249 3 146 1.65E-48 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS09205 2f21037ba3e0ae27018d3f20019a1ab0 152 Pfam PF00436 Single-strand binding protein family 5 109 1.7E-36 T 22-04-2016 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 PP4_RS11375 94260cb6fbe6da43d30e1e8d2fab87c3 435 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 69 396 8.8E-75 T 22-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 PP4_RS11375 94260cb6fbe6da43d30e1e8d2fab87c3 435 PANTHER PTHR30469 66 407 5.5E-164 T 22-04-2016 PP4_RS11375 94260cb6fbe6da43d30e1e8d2fab87c3 435 Pfam PF13437 HlyD family secretion protein 204 305 3.0E-5 T 22-04-2016 PP4_RS11375 94260cb6fbe6da43d30e1e8d2fab87c3 435 Pfam PF13533 Biotin-lipoyl like 93 141 1.7E-16 T 22-04-2016 PP4_RS11375 94260cb6fbe6da43d30e1e8d2fab87c3 435 Gene3D G3DSA:2.40.50.100 92 126 1.3E-24 T 22-04-2016 PP4_RS11375 94260cb6fbe6da43d30e1e8d2fab87c3 435 Gene3D G3DSA:2.40.50.100 201 236 1.3E-24 T 22-04-2016 PP4_RS11375 94260cb6fbe6da43d30e1e8d2fab87c3 435 PANTHER PTHR30469:SF12 66 407 5.5E-164 T 22-04-2016 IPR022824 Multidrug resistance protein MdtA PP4_RS11375 94260cb6fbe6da43d30e1e8d2fab87c3 435 SUPERFAMILY SSF111369 81 319 1.83E-57 T 22-04-2016 PP4_RS19105 8842069a986ae4c8356f887c42db0f82 404 PANTHER PTHR30199 18 402 4.6E-129 T 22-04-2016 PP4_RS19105 8842069a986ae4c8356f887c42db0f82 404 Pfam PF03594 Benzoate membrane transport protein 21 391 1.8E-133 T 22-04-2016 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 PP4_RS19105 8842069a986ae4c8356f887c42db0f82 404 PANTHER PTHR30199:SF0 18 402 4.6E-129 T 22-04-2016 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 PP4_RS19105 8842069a986ae4c8356f887c42db0f82 404 TIGRFAM TIGR00843 benE: benzoate transporter 12 392 2.7E-118 T 22-04-2016 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 PP4_RS01330 f7347b1ccc45dad514ba4b6307ba03cd 71 Gene3D G3DSA:2.40.50.100 6 69 1.1E-21 T 22-04-2016 PP4_RS01330 f7347b1ccc45dad514ba4b6307ba03cd 71 SUPERFAMILY SSF50331 6 69 2.09E-16 T 22-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal PP4_RS01330 f7347b1ccc45dad514ba4b6307ba03cd 71 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 7 69 1.5E-18 T 22-04-2016 IPR004606 Molybdenum-pterin binding GO:0006810|GO:0030151 PP4_RS01330 f7347b1ccc45dad514ba4b6307ba03cd 71 Pfam PF03459 TOBE domain 8 67 8.3E-16 T 22-04-2016 IPR005116 Transport-associated OB, type 1 PP4_RS09605 258da4a7782649d547e4a95f5344a411 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 15 59 2.5E-14 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS09605 258da4a7782649d547e4a95f5344a411 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 13 26 2.0E-8 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS09605 258da4a7782649d547e4a95f5344a411 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 34 57 2.0E-8 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS09605 258da4a7782649d547e4a95f5344a411 199 PANTHER PTHR30055 12 191 2.6E-16 T 22-04-2016 PP4_RS09605 258da4a7782649d547e4a95f5344a411 199 Gene3D G3DSA:1.10.357.10 13 195 2.5E-22 T 22-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PP4_RS09605 258da4a7782649d547e4a95f5344a411 199 PANTHER PTHR30055:SF63 12 191 2.6E-16 T 22-04-2016 PP4_RS09605 258da4a7782649d547e4a95f5344a411 199 SUPERFAMILY SSF46689 12 76 1.44E-15 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS21250 dc453d79a8c3c8c28ff5dcac67958117 334 SUPERFAMILY SSF52172 13 146 8.4E-29 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS21250 dc453d79a8c3c8c28ff5dcac67958117 334 SUPERFAMILY SSF55073 174 331 1.65E-48 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS21250 dc453d79a8c3c8c28ff5dcac67958117 334 SMART SM00448 17 131 1.1E-20 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS21250 dc453d79a8c3c8c28ff5dcac67958117 334 PANTHER PTHR10799:SF750 54 331 4.3E-34 T 22-04-2016 PP4_RS21250 dc453d79a8c3c8c28ff5dcac67958117 334 Gene3D G3DSA:3.40.50.2300 14 137 8.6E-28 T 22-04-2016 PP4_RS21250 dc453d79a8c3c8c28ff5dcac67958117 334 Pfam PF00072 Response regulator receiver domain 19 131 5.5E-18 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS21250 dc453d79a8c3c8c28ff5dcac67958117 334 Pfam PF00990 Diguanylate cyclase, GGDEF domain 170 330 2.6E-49 T 22-04-2016 IPR000160 GGDEF domain PP4_RS21250 dc453d79a8c3c8c28ff5dcac67958117 334 PANTHER PTHR10799 54 331 4.3E-34 T 22-04-2016 PP4_RS21250 dc453d79a8c3c8c28ff5dcac67958117 334 Gene3D G3DSA:3.30.70.270 171 332 5.2E-53 T 22-04-2016 PP4_RS21250 dc453d79a8c3c8c28ff5dcac67958117 334 SMART SM00267 158 334 2.2E-61 T 22-04-2016 IPR000160 GGDEF domain PP4_RS21250 dc453d79a8c3c8c28ff5dcac67958117 334 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 165 331 5.1E-50 T 22-04-2016 IPR000160 GGDEF domain PP4_RS13960 e5e7267556156e7f8878e19091720934 324 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 148 176 - T 22-04-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 PP4_RS13960 e5e7267556156e7f8878e19091720934 324 Gene3D G3DSA:3.40.50.720 114 290 2.7E-67 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS13960 e5e7267556156e7f8878e19091720934 324 PANTHER PTHR10996:SF118 1 319 2.0E-137 T 22-04-2016 PP4_RS13960 e5e7267556156e7f8878e19091720934 324 Gene3D G3DSA:3.40.50.720 3 113 2.1E-28 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS13960 e5e7267556156e7f8878e19091720934 324 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 287 7.4E-63 T 22-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 PP4_RS13960 e5e7267556156e7f8878e19091720934 324 SUPERFAMILY SSF51735 100 288 2.63E-60 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS13960 e5e7267556156e7f8878e19091720934 324 PANTHER PTHR10996 1 319 2.0E-137 T 22-04-2016 PP4_RS13960 e5e7267556156e7f8878e19091720934 324 SUPERFAMILY SSF52283 1 133 5.48E-29 T 22-04-2016 PP4_RS13960 e5e7267556156e7f8878e19091720934 324 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 5 319 1.2E-28 T 22-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 PP4_RS08345 115aa42b0642817340d63c625ec1fe98 225 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 88 175 2.0E-21 T 22-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 PP4_RS08345 115aa42b0642817340d63c625ec1fe98 225 SUPERFAMILY SSF56770 44 190 1.96E-63 T 22-04-2016 PP4_RS08345 115aa42b0642817340d63c625ec1fe98 225 TIGRFAM TIGR01957 nuoB_fam: NADH-quinone oxidoreductase, B subunit 50 183 2.6E-67 T 22-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 PP4_RS08345 115aa42b0642817340d63c625ec1fe98 225 PANTHER PTHR11995 2 221 1.0E-130 T 22-04-2016 PP4_RS08345 115aa42b0642817340d63c625ec1fe98 225 Hamap MF_01356 NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 28 182 42.473 T 22-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 PP4_RS08345 115aa42b0642817340d63c625ec1fe98 225 Gene3D G3DSA:3.40.50.700 52 179 2.7E-30 T 22-04-2016 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 PP4_RS08345 115aa42b0642817340d63c625ec1fe98 225 PANTHER PTHR11995:SF14 2 221 1.0E-130 T 22-04-2016 PP4_RS08345 115aa42b0642817340d63c625ec1fe98 225 ProSitePatterns PS01150 Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 149 165 - T 22-04-2016 IPR006138 NADH-ubiquinone oxidoreductase, 20 Kd subunit GO:0008137|GO:0048038|GO:0051539|GO:0055114 PP4_RS19995 50d1943e88ed6916149efbc8cdd71a94 111 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 47 110 3.5E-23 T 22-04-2016 IPR004509 Competence protein ComEA, helix-hairpin-helix domain PP4_RS19995 50d1943e88ed6916149efbc8cdd71a94 111 PANTHER PTHR21180 45 110 1.1E-21 T 22-04-2016 PP4_RS19995 50d1943e88ed6916149efbc8cdd71a94 111 SUPERFAMILY SSF47781 39 110 2.22E-25 T 22-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 PP4_RS19995 50d1943e88ed6916149efbc8cdd71a94 111 Pfam PF12836 Helix-hairpin-helix motif 46 108 2.1E-21 T 22-04-2016 PP4_RS19995 50d1943e88ed6916149efbc8cdd71a94 111 Gene3D G3DSA:1.10.150.320 40 110 8.6E-17 T 22-04-2016 PP4_RS14515 f01301974608e2c2f09a4e468929d4ce 224 PANTHER PTHR35568:SF1 6 224 2.4E-33 T 22-04-2016 PP4_RS14515 f01301974608e2c2f09a4e468929d4ce 224 Pfam PF08348 YheO-like PAS domain 13 134 1.3E-29 T 22-04-2016 IPR013559 YheO-like PP4_RS14515 f01301974608e2c2f09a4e468929d4ce 224 PANTHER PTHR35568 6 224 2.4E-33 T 22-04-2016 PP4_RS14515 f01301974608e2c2f09a4e468929d4ce 224 Pfam PF13309 HTH domain 158 216 3.8E-18 T 22-04-2016 PP4_RS14515 f01301974608e2c2f09a4e468929d4ce 224 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 17 141 3.0E-67 T 22-04-2016 IPR013559 YheO-like PP4_RS23820 229bec52909281f8d77b1a69a36875ae 87 Pfam PF11275 Protein of unknown function (DUF3077) 9 82 4.8E-18 T 22-04-2016 IPR021427 Protein of unknown function DUF3077 PP4_RS12505 be9783fbc1cb4246e0c3e3fbe428db71 1279 PANTHER PTHR32305 19 983 2.0E-182 T 22-04-2016 PP4_RS12505 be9783fbc1cb4246e0c3e3fbe428db71 1279 PANTHER PTHR32305:SF6 1021 1275 2.0E-182 T 22-04-2016 PP4_RS12505 be9783fbc1cb4246e0c3e3fbe428db71 1279 Pfam PF05593 RHS Repeat 859 894 4.5E-8 T 22-04-2016 IPR031325 RHS repeat PP4_RS12505 be9783fbc1cb4246e0c3e3fbe428db71 1279 Pfam PF03527 RHS protein 1173 1206 5.9E-16 T 22-04-2016 IPR001826 RHS protein PP4_RS12505 be9783fbc1cb4246e0c3e3fbe428db71 1279 PANTHER PTHR32305:SF6 19 983 2.0E-182 T 22-04-2016 PP4_RS12505 be9783fbc1cb4246e0c3e3fbe428db71 1279 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 699 736 8.3E-4 T 22-04-2016 IPR006530 YD repeat PP4_RS12505 be9783fbc1cb4246e0c3e3fbe428db71 1279 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 527 567 8.6E-8 T 22-04-2016 IPR006530 YD repeat PP4_RS12505 be9783fbc1cb4246e0c3e3fbe428db71 1279 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 676 714 6.6E-6 T 22-04-2016 IPR006530 YD repeat PP4_RS12505 be9783fbc1cb4246e0c3e3fbe428db71 1279 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 576 609 0.0027 T 22-04-2016 IPR006530 YD repeat PP4_RS12505 be9783fbc1cb4246e0c3e3fbe428db71 1279 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 737 777 0.0018 T 22-04-2016 IPR006530 YD repeat PP4_RS12505 be9783fbc1cb4246e0c3e3fbe428db71 1279 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 859 896 3.6E-7 T 22-04-2016 IPR006530 YD repeat PP4_RS12505 be9783fbc1cb4246e0c3e3fbe428db71 1279 PANTHER PTHR32305 1021 1275 2.0E-182 T 22-04-2016 PP4_RS12505 be9783fbc1cb4246e0c3e3fbe428db71 1279 PRINTS PR00394 RHS protein signature 1243 1262 1.7E-10 T 22-04-2016 IPR001826 RHS protein PP4_RS12505 be9783fbc1cb4246e0c3e3fbe428db71 1279 PRINTS PR00394 RHS protein signature 1166 1186 1.7E-10 T 22-04-2016 IPR001826 RHS protein PP4_RS12505 be9783fbc1cb4246e0c3e3fbe428db71 1279 PRINTS PR00394 RHS protein signature 1220 1240 1.7E-10 T 22-04-2016 IPR001826 RHS protein PP4_RS12505 be9783fbc1cb4246e0c3e3fbe428db71 1279 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 1200 1275 1.4E-21 T 22-04-2016 IPR022385 Rhs repeat-associated core GO:0097264 PP4_RS12505 be9783fbc1cb4246e0c3e3fbe428db71 1279 Pfam PF05488 PAAR motif 73 138 7.9E-17 T 22-04-2016 IPR008727 PAAR motif PP4_RS04190 56144d03e40dd33b934b2da0a4ebaa8f 449 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 2 334 36.845 T 22-04-2016 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2 PP4_RS04190 56144d03e40dd33b934b2da0a4ebaa8f 449 Gene3D G3DSA:1.10.240.10 214 299 3.6E-26 T 22-04-2016 PP4_RS04190 56144d03e40dd33b934b2da0a4ebaa8f 449 SUPERFAMILY SSF160113 354 408 3.14E-9 T 22-04-2016 IPR010879 Domain of unknown function DUF1508 PP4_RS04190 56144d03e40dd33b934b2da0a4ebaa8f 449 Pfam PF00579 tRNA synthetases class I (W and Y) 3 282 5.7E-56 T 22-04-2016 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS04190 56144d03e40dd33b934b2da0a4ebaa8f 449 PANTHER PTHR10055:SF11 1 337 2.5E-204 T 22-04-2016 PP4_RS04190 56144d03e40dd33b934b2da0a4ebaa8f 449 Gene3D G3DSA:3.40.50.620 3 213 1.0E-73 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS04190 56144d03e40dd33b934b2da0a4ebaa8f 449 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 1 333 1.1E-102 T 22-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 PP4_RS04190 56144d03e40dd33b934b2da0a4ebaa8f 449 SUPERFAMILY SSF52374 4 333 5.63E-79 T 22-04-2016 PP4_RS04190 56144d03e40dd33b934b2da0a4ebaa8f 449 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 150 171 1.3E-18 T 22-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 PP4_RS04190 56144d03e40dd33b934b2da0a4ebaa8f 449 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 67 86 1.3E-18 T 22-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 PP4_RS04190 56144d03e40dd33b934b2da0a4ebaa8f 449 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 15 31 1.3E-18 T 22-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 PP4_RS04190 56144d03e40dd33b934b2da0a4ebaa8f 449 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 204 214 1.3E-18 T 22-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 PP4_RS04190 56144d03e40dd33b934b2da0a4ebaa8f 449 PANTHER PTHR10055 1 337 2.5E-204 T 22-04-2016 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2|Reactome: REACT_71 PP4_RS06325 37862d6a728ae1f293634b8481add973 327 PANTHER PTHR10696 23 320 1.1E-80 T 22-04-2016 PP4_RS06325 37862d6a728ae1f293634b8481add973 327 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 29 317 7.0E-47 T 22-04-2016 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: REACT_13 PP4_RS06325 37862d6a728ae1f293634b8481add973 327 Gene3D G3DSA:3.60.130.10 27 167 5.2E-66 T 22-04-2016 PP4_RS06325 37862d6a728ae1f293634b8481add973 327 Gene3D G3DSA:3.60.130.10 199 320 5.2E-66 T 22-04-2016 PP4_RS06325 37862d6a728ae1f293634b8481add973 327 SUPERFAMILY SSF51197 18 318 1.83E-90 T 22-04-2016 PP4_RS06325 37862d6a728ae1f293634b8481add973 327 PANTHER PTHR10696:SF27 23 320 1.1E-80 T 22-04-2016 PP4_RS08340 2ae79aaadb220bcdffa1f194b6b48138 593 PANTHER PTHR11993:SF28 141 588 3.0E-299 T 22-04-2016 PP4_RS08340 2ae79aaadb220bcdffa1f194b6b48138 593 Hamap MF_01359 NADH-quinone oxidoreductase subunit C/D [nuoC]. 10 593 71.216 T 22-04-2016 IPR023062 NADH dehydrogenase, subunit CD GO:0030964|GO:0050136|GO:0055114 KEGG: 00190+1.6.5.11 PP4_RS08340 2ae79aaadb220bcdffa1f194b6b48138 593 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 323 593 1.5E-105 T 22-04-2016 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 PP4_RS08340 2ae79aaadb220bcdffa1f194b6b48138 593 TIGRFAM TIGR01961 NuoC_fam: NADH (or F420H2) dehydrogenase, subunit C 43 170 2.8E-42 T 22-04-2016 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 PP4_RS08340 2ae79aaadb220bcdffa1f194b6b48138 593 Hamap MF_01357 NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [ndhJ]. 20 179 25.765 T 22-04-2016 IPR010218 NADH dehydrogenase, subunit C GO:0016651|GO:0055114 PP4_RS08340 2ae79aaadb220bcdffa1f194b6b48138 593 ProSitePatterns PS00535 Respiratory chain NADH dehydrogenase 49 Kd subunit signature. 246 257 - T 22-04-2016 IPR014029 NADH:ubiquinone oxidoreductase, 49kDa subunit, conserved site GO:0016651|GO:0055114 PP4_RS08340 2ae79aaadb220bcdffa1f194b6b48138 593 PANTHER PTHR11993 141 588 3.0E-299 T 22-04-2016 PP4_RS08340 2ae79aaadb220bcdffa1f194b6b48138 593 Hamap MF_01358 NAD(P)H-quinone oxidoreductase subunit H, chloroplastic [ndhH]. 205 593 42.166 T 22-04-2016 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 PP4_RS08340 2ae79aaadb220bcdffa1f194b6b48138 593 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 99 154 7.0E-27 T 22-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 PP4_RS08340 2ae79aaadb220bcdffa1f194b6b48138 593 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 44 172 2.5E-41 T 22-04-2016 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 PP4_RS08340 2ae79aaadb220bcdffa1f194b6b48138 593 TIGRFAM TIGR01962 NuoD: NADH dehydrogenase (quinone), D subunit 209 593 4.2E-171 T 22-04-2016 IPR022885 NAD(P)H-quinone oxidoreductase subunit D/H GO:0016651|GO:0055114 PP4_RS08340 2ae79aaadb220bcdffa1f194b6b48138 593 SUPERFAMILY SSF143243 18 223 3.27E-60 T 22-04-2016 PP4_RS08340 2ae79aaadb220bcdffa1f194b6b48138 593 SUPERFAMILY SSF56762 219 593 4.06E-123 T 22-04-2016 IPR029014 NiFe hydrogenase-like PP4_RS08340 2ae79aaadb220bcdffa1f194b6b48138 593 Gene3D G3DSA:1.10.645.10 436 577 7.0E-15 T 22-04-2016 IPR029014 NiFe hydrogenase-like PP4_RS08340 2ae79aaadb220bcdffa1f194b6b48138 593 Gene3D G3DSA:1.10.645.10 210 434 1.0E-34 T 22-04-2016 IPR029014 NiFe hydrogenase-like PP4_RS00280 8789a16f58913cadd0fe0940e20ae4d8 457 Pfam PF02254 TrkA-N domain 234 349 6.5E-25 T 22-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 PP4_RS00280 8789a16f58913cadd0fe0940e20ae4d8 457 Pfam PF02254 TrkA-N domain 3 124 3.6E-26 T 22-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 PP4_RS00280 8789a16f58913cadd0fe0940e20ae4d8 457 PRINTS PR00335 TrkA potassium uptake protein signature 60 70 1.3E-30 T 22-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 PP4_RS00280 8789a16f58913cadd0fe0940e20ae4d8 457 PRINTS PR00335 TrkA potassium uptake protein signature 49 59 1.3E-30 T 22-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 PP4_RS00280 8789a16f58913cadd0fe0940e20ae4d8 457 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 1.3E-30 T 22-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 PP4_RS00280 8789a16f58913cadd0fe0940e20ae4d8 457 PRINTS PR00335 TrkA potassium uptake protein signature 73 87 1.3E-30 T 22-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 PP4_RS00280 8789a16f58913cadd0fe0940e20ae4d8 457 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 1.3E-30 T 22-04-2016 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 PP4_RS00280 8789a16f58913cadd0fe0940e20ae4d8 457 SUPERFAMILY SSF51735 231 375 7.88E-34 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS00280 8789a16f58913cadd0fe0940e20ae4d8 457 SUPERFAMILY SSF51735 1 150 1.75E-33 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS00280 8789a16f58913cadd0fe0940e20ae4d8 457 Gene3D G3DSA:3.40.50.720 1 151 5.2E-47 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS00280 8789a16f58913cadd0fe0940e20ae4d8 457 Gene3D G3DSA:3.40.50.720 231 375 1.7E-38 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS00280 8789a16f58913cadd0fe0940e20ae4d8 457 SUPERFAMILY SSF116726 361 449 5.23E-9 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PP4_RS00280 8789a16f58913cadd0fe0940e20ae4d8 457 PANTHER PTHR13789 1 169 3.6E-93 T 22-04-2016 PP4_RS00280 8789a16f58913cadd0fe0940e20ae4d8 457 PANTHER PTHR13789 415 439 3.6E-93 T 22-04-2016 PP4_RS00280 8789a16f58913cadd0fe0940e20ae4d8 457 Gene3D G3DSA:3.30.70.1450 154 224 4.5E-6 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PP4_RS00280 8789a16f58913cadd0fe0940e20ae4d8 457 Gene3D G3DSA:3.30.70.1450 389 449 7.6E-6 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PP4_RS00280 8789a16f58913cadd0fe0940e20ae4d8 457 PANTHER PTHR13789:SF225 1 169 3.6E-93 T 22-04-2016 PP4_RS00280 8789a16f58913cadd0fe0940e20ae4d8 457 PANTHER PTHR13789:SF225 415 439 3.6E-93 T 22-04-2016 PP4_RS00280 8789a16f58913cadd0fe0940e20ae4d8 457 SUPERFAMILY SSF116726 135 222 1.14E-11 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PP4_RS00280 8789a16f58913cadd0fe0940e20ae4d8 457 Pfam PF02080 TrkA-C domain 389 450 1.5E-11 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PP4_RS00280 8789a16f58913cadd0fe0940e20ae4d8 457 Pfam PF02080 TrkA-C domain 155 221 1.8E-12 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PP4_RS03460 e1ed4734e984818353a66fdb99a4e298 423 Gene3D G3DSA:3.30.70.270 250 413 1.5E-59 T 22-04-2016 PP4_RS03460 e1ed4734e984818353a66fdb99a4e298 423 PANTHER PTHR10799:SF774 167 406 3.8E-50 T 22-04-2016 PP4_RS03460 e1ed4734e984818353a66fdb99a4e298 423 Pfam PF00990 Diguanylate cyclase, GGDEF domain 248 405 3.8E-51 T 22-04-2016 IPR000160 GGDEF domain PP4_RS03460 e1ed4734e984818353a66fdb99a4e298 423 PANTHER PTHR10799 167 406 3.8E-50 T 22-04-2016 PP4_RS03460 e1ed4734e984818353a66fdb99a4e298 423 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 244 410 2.5E-47 T 22-04-2016 IPR000160 GGDEF domain PP4_RS03460 e1ed4734e984818353a66fdb99a4e298 423 SUPERFAMILY SSF55073 253 410 3.14E-50 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS03460 e1ed4734e984818353a66fdb99a4e298 423 SMART SM00267 237 410 7.7E-69 T 22-04-2016 IPR000160 GGDEF domain PP4_RS03460 e1ed4734e984818353a66fdb99a4e298 423 Pfam PF17152 Periplasmic sensor domain 44 145 4.1E-30 T 22-04-2016 IPR033417 Periplasmic sensor domain CHASE8 UniPathway: UPA00599 PP4_RS05980 54f831830ce3779cee7d08b16abe4154 478 Gene3D G3DSA:1.25.40.10 284 447 6.4E-16 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS05980 54f831830ce3779cee7d08b16abe4154 478 Pfam PF01435 Peptidase family M48 63 250 5.2E-30 T 22-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 PP4_RS05980 54f831830ce3779cee7d08b16abe4154 478 Hamap MF_00997 Beta-barrel assembly-enhancing protease [bepA]. 1 473 31.727 T 22-04-2016 IPR030873 Beta-barrel assembly-enhancing protease GO:0006508|GO:0008237|GO:0016020|GO:0061077 PP4_RS05980 54f831830ce3779cee7d08b16abe4154 478 Gene3D G3DSA:3.30.2010.10 59 142 2.8E-18 T 22-04-2016 PP4_RS05980 54f831830ce3779cee7d08b16abe4154 478 PANTHER PTHR22726:SF10 1 345 7.6E-116 T 22-04-2016 PP4_RS05980 54f831830ce3779cee7d08b16abe4154 478 PANTHER PTHR22726 1 345 7.6E-116 T 22-04-2016 PP4_RS05980 54f831830ce3779cee7d08b16abe4154 478 SUPERFAMILY SSF48452 284 447 3.45E-14 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS05980 54f831830ce3779cee7d08b16abe4154 478 Pfam PF14559 Tetratricopeptide repeat 346 404 9.6E-9 T 22-04-2016 PP4_RS05980 54f831830ce3779cee7d08b16abe4154 478 Pfam PF14559 Tetratricopeptide repeat 278 339 1.3E-8 T 22-04-2016 PP4_RS02790 0c45034881a9d698fb495c6628097ad1 236 SMART SM00382 31 228 6.4E-9 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS02790 0c45034881a9d698fb495c6628097ad1 236 SUPERFAMILY SSF52540 4 225 8.77E-48 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS02790 0c45034881a9d698fb495c6628097ad1 236 PANTHER PTHR24220:SF578 7 226 2.1E-78 T 22-04-2016 PP4_RS02790 0c45034881a9d698fb495c6628097ad1 236 PANTHER PTHR24220 7 226 2.1E-78 T 22-04-2016 PP4_RS02790 0c45034881a9d698fb495c6628097ad1 236 Pfam PF00005 ABC transporter 26 180 1.5E-26 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS02790 0c45034881a9d698fb495c6628097ad1 236 Gene3D G3DSA:3.40.50.300 4 224 1.4E-51 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23755 e8421360d38694405095201c2c99236a 641 SUPERFAMILY SSF53067 187 382 8.43E-69 T 22-04-2016 PP4_RS23755 e8421360d38694405095201c2c99236a 641 PANTHER PTHR19375 2 641 0.0 T 22-04-2016 PP4_RS23755 e8421360d38694405095201c2c99236a 641 Gene3D G3DSA:3.30.30.30 53 108 2.0E-27 T 22-04-2016 PP4_RS23755 e8421360d38694405095201c2c99236a 641 Gene3D G3DSA:3.30.420.40 4 52 1.2E-64 T 22-04-2016 PP4_RS23755 e8421360d38694405095201c2c99236a 641 Gene3D G3DSA:3.30.420.40 119 192 1.2E-64 T 22-04-2016 PP4_RS23755 e8421360d38694405095201c2c99236a 641 Gene3D G3DSA:3.30.420.40 319 360 6.9E-34 T 22-04-2016 PP4_RS23755 e8421360d38694405095201c2c99236a 641 Gene3D G3DSA:3.30.420.40 193 229 6.9E-34 T 22-04-2016 PP4_RS23755 e8421360d38694405095201c2c99236a 641 Pfam PF00012 Hsp70 protein 4 603 5.0E-261 T 22-04-2016 IPR013126 Heat shock protein 70 family PP4_RS23755 e8421360d38694405095201c2c99236a 641 SUPERFAMILY SSF100920 384 539 1.12E-60 T 22-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain PP4_RS23755 e8421360d38694405095201c2c99236a 641 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 635 36.515 T 22-04-2016 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 PP4_RS23755 e8421360d38694405095201c2c99236a 641 SUPERFAMILY SSF100934 507 603 1.44E-23 T 22-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain PP4_RS23755 e8421360d38694405095201c2c99236a 641 Gene3D G3DSA:1.20.1270.10 532 603 1.8E-27 T 22-04-2016 IPR029048 Heat shock protein 70kD, C-terminal domain PP4_RS23755 e8421360d38694405095201c2c99236a 641 Gene3D G3DSA:2.60.34.10 390 531 2.9E-71 T 22-04-2016 IPR029047 Heat shock protein 70kD, peptide-binding domain PP4_RS23755 e8421360d38694405095201c2c99236a 641 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 603 2.1E-286 T 22-04-2016 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 PP4_RS23755 e8421360d38694405095201c2c99236a 641 SUPERFAMILY SSF53067 4 183 3.63E-65 T 22-04-2016 PP4_RS23755 e8421360d38694405095201c2c99236a 641 PRINTS PR00301 70kDa heat shock protein signature 469 485 7.2E-80 T 22-04-2016 IPR013126 Heat shock protein 70 family PP4_RS23755 e8421360d38694405095201c2c99236a 641 PRINTS PR00301 70kDa heat shock protein signature 198 208 7.2E-80 T 22-04-2016 IPR013126 Heat shock protein 70 family PP4_RS23755 e8421360d38694405095201c2c99236a 641 PRINTS PR00301 70kDa heat shock protein signature 3 16 7.2E-80 T 22-04-2016 IPR013126 Heat shock protein 70 family PP4_RS23755 e8421360d38694405095201c2c99236a 641 PRINTS PR00301 70kDa heat shock protein signature 365 385 7.2E-80 T 22-04-2016 IPR013126 Heat shock protein 70 family PP4_RS23755 e8421360d38694405095201c2c99236a 641 PRINTS PR00301 70kDa heat shock protein signature 388 407 7.2E-80 T 22-04-2016 IPR013126 Heat shock protein 70 family PP4_RS23755 e8421360d38694405095201c2c99236a 641 PRINTS PR00301 70kDa heat shock protein signature 334 350 7.2E-80 T 22-04-2016 IPR013126 Heat shock protein 70 family PP4_RS23755 e8421360d38694405095201c2c99236a 641 PRINTS PR00301 70kDa heat shock protein signature 138 158 7.2E-80 T 22-04-2016 IPR013126 Heat shock protein 70 family PP4_RS23755 e8421360d38694405095201c2c99236a 641 PRINTS PR00301 70kDa heat shock protein signature 31 43 7.2E-80 T 22-04-2016 IPR013126 Heat shock protein 70 family PP4_RS23755 e8421360d38694405095201c2c99236a 641 PRINTS PR00301 70kDa heat shock protein signature 54 62 7.2E-80 T 22-04-2016 IPR013126 Heat shock protein 70 family PP4_RS23755 e8421360d38694405095201c2c99236a 641 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 337 351 - T 22-04-2016 IPR018181 Heat shock protein 70, conserved site PP4_RS23755 e8421360d38694405095201c2c99236a 641 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 192 205 - T 22-04-2016 IPR018181 Heat shock protein 70, conserved site PP4_RS23755 e8421360d38694405095201c2c99236a 641 Gene3D G3DSA:3.90.640.10 230 315 9.4E-30 T 22-04-2016 PP4_RS23755 e8421360d38694405095201c2c99236a 641 PANTHER PTHR19375:SF173 2 641 0.0 T 22-04-2016 PP4_RS23755 e8421360d38694405095201c2c99236a 641 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 22-04-2016 IPR018181 Heat shock protein 70, conserved site PP4_RS12955 ea5a84f5d7c748614061d97b52b6dd1d 327 Pfam PF02630 SCO1/SenC 49 145 1.5E-16 T 22-04-2016 IPR003782 Copper chaperone SCO1/SenC PP4_RS12955 ea5a84f5d7c748614061d97b52b6dd1d 327 SUPERFAMILY SSF46626 214 311 9.46E-16 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS12955 ea5a84f5d7c748614061d97b52b6dd1d 327 Gene3D G3DSA:3.40.30.10 9 173 6.7E-32 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS12955 ea5a84f5d7c748614061d97b52b6dd1d 327 SUPERFAMILY SSF52833 40 197 3.11E-33 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS12955 ea5a84f5d7c748614061d97b52b6dd1d 327 Gene3D G3DSA:1.10.760.10 218 311 1.8E-13 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS12955 ea5a84f5d7c748614061d97b52b6dd1d 327 PANTHER PTHR12151 2 150 2.8E-27 T 22-04-2016 IPR003782 Copper chaperone SCO1/SenC PP4_RS12955 ea5a84f5d7c748614061d97b52b6dd1d 327 Pfam PF00034 Cytochrome c 222 312 3.8E-9 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS00090 3bb887a3cc14f3a26c9a433106b3c041 301 Gene3D G3DSA:1.20.1510.10 17 211 1.7E-59 T 22-04-2016 IPR027469 Cation efflux protein transmembrane domain PP4_RS00090 3bb887a3cc14f3a26c9a433106b3c041 301 Pfam PF01545 Cation efflux family 20 211 7.3E-48 T 22-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 PP4_RS00090 3bb887a3cc14f3a26c9a433106b3c041 301 SUPERFAMILY SSF160240 219 288 6.28E-10 T 22-04-2016 PP4_RS00090 3bb887a3cc14f3a26c9a433106b3c041 301 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 17 290 1.5E-87 T 22-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 PP4_RS00090 3bb887a3cc14f3a26c9a433106b3c041 301 SUPERFAMILY SSF161111 16 212 1.83E-57 T 22-04-2016 PP4_RS00090 3bb887a3cc14f3a26c9a433106b3c041 301 Gene3D G3DSA:3.30.70.1350 220 288 3.7E-4 T 22-04-2016 IPR027470 Cation efflux protein, cytoplasmic domain PP4_RS00090 3bb887a3cc14f3a26c9a433106b3c041 301 PANTHER PTHR11562:SF17 14 297 4.3E-103 T 22-04-2016 PP4_RS00090 3bb887a3cc14f3a26c9a433106b3c041 301 PANTHER PTHR11562 14 297 4.3E-103 T 22-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 PP4_RS10495 51b1e228ce967f3365f7322ff5b4c3e4 398 Gene3D G3DSA:3.30.9.10 101 153 2.1E-17 T 22-04-2016 PP4_RS10495 51b1e228ce967f3365f7322ff5b4c3e4 398 Gene3D G3DSA:3.30.9.10 233 325 2.1E-17 T 22-04-2016 PP4_RS10495 51b1e228ce967f3365f7322ff5b4c3e4 398 PANTHER PTHR13847:SF44 3 398 9.6E-102 T 22-04-2016 PP4_RS10495 51b1e228ce967f3365f7322ff5b4c3e4 398 Pfam PF01266 FAD dependent oxidoreductase 11 367 1.3E-50 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PP4_RS10495 51b1e228ce967f3365f7322ff5b4c3e4 398 PANTHER PTHR13847 3 398 9.6E-102 T 22-04-2016 PP4_RS10495 51b1e228ce967f3365f7322ff5b4c3e4 398 SUPERFAMILY SSF51905 9 233 4.86E-45 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS10495 51b1e228ce967f3365f7322ff5b4c3e4 398 SUPERFAMILY SSF51905 328 387 4.86E-45 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS10495 51b1e228ce967f3365f7322ff5b4c3e4 398 Gene3D G3DSA:3.50.50.60 5 93 4.4E-45 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS10495 51b1e228ce967f3365f7322ff5b4c3e4 398 Gene3D G3DSA:3.50.50.60 154 232 4.4E-45 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS10495 51b1e228ce967f3365f7322ff5b4c3e4 398 Gene3D G3DSA:3.50.50.60 328 386 4.4E-45 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS01790 0f2a94533cfb02508fc06640b362cfb7 1004 PANTHER PTHR13847:SF189 120 222 5.8E-149 T 22-04-2016 PP4_RS01790 0f2a94533cfb02508fc06640b362cfb7 1004 PANTHER PTHR13847:SF189 615 927 5.8E-149 T 22-04-2016 PP4_RS01790 0f2a94533cfb02508fc06640b362cfb7 1004 Gene3D G3DSA:2.40.30.110 909 1004 8.8E-18 T 22-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 PP4_RS01790 0f2a94533cfb02508fc06640b362cfb7 1004 PANTHER PTHR13847 120 222 5.8E-149 T 22-04-2016 PP4_RS01790 0f2a94533cfb02508fc06640b362cfb7 1004 PANTHER PTHR13847 615 927 5.8E-149 T 22-04-2016 PP4_RS01790 0f2a94533cfb02508fc06640b362cfb7 1004 SUPERFAMILY SSF103025 613 895 9.26E-92 T 22-04-2016 PP4_RS01790 0f2a94533cfb02508fc06640b362cfb7 1004 SUPERFAMILY SSF51905 167 473 1.17E-38 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS01790 0f2a94533cfb02508fc06640b362cfb7 1004 Pfam PF01571 Aminomethyltransferase folate-binding domain 619 884 9.0E-74 T 22-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal PP4_RS01790 0f2a94533cfb02508fc06640b362cfb7 1004 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 172 194 4.4E-14 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PP4_RS01790 0f2a94533cfb02508fc06640b362cfb7 1004 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 460 478 4.4E-14 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PP4_RS01790 0f2a94533cfb02508fc06640b362cfb7 1004 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 284 292 4.4E-14 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PP4_RS01790 0f2a94533cfb02508fc06640b362cfb7 1004 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 373 389 4.4E-14 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PP4_RS01790 0f2a94533cfb02508fc06640b362cfb7 1004 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 283 301 4.5E-12 T 22-04-2016 PP4_RS01790 0f2a94533cfb02508fc06640b362cfb7 1004 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 450 472 4.5E-12 T 22-04-2016 PP4_RS01790 0f2a94533cfb02508fc06640b362cfb7 1004 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 173 192 4.5E-12 T 22-04-2016 PP4_RS01790 0f2a94533cfb02508fc06640b362cfb7 1004 SUPERFAMILY SSF101790 906 1002 4.41E-16 T 22-04-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain PP4_RS01790 0f2a94533cfb02508fc06640b362cfb7 1004 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 172 486 4.3E-15 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS01790 0f2a94533cfb02508fc06640b362cfb7 1004 Gene3D G3DSA:3.30.1360.120 768 861 5.3E-29 T 22-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 PP4_RS01790 0f2a94533cfb02508fc06640b362cfb7 1004 Gene3D G3DSA:3.30.1360.120 614 673 5.3E-29 T 22-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 PP4_RS01790 0f2a94533cfb02508fc06640b362cfb7 1004 TIGRFAM TIGR01372 soxA: sarcosine oxidase, alpha subunit family 2 1004 0.0 T 22-04-2016 IPR006277 Sarcosine oxidase, alpha subunit GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 PP4_RS01790 0f2a94533cfb02508fc06640b362cfb7 1004 Gene3D G3DSA:3.30.70.1400 674 748 2.7E-23 T 22-04-2016 PP4_RS01790 0f2a94533cfb02508fc06640b362cfb7 1004 Gene3D G3DSA:3.50.50.60 164 312 5.5E-34 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS01790 0f2a94533cfb02508fc06640b362cfb7 1004 Gene3D G3DSA:3.50.50.60 359 484 5.5E-34 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS01790 0f2a94533cfb02508fc06640b362cfb7 1004 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 17 102 2.0E-22 T 22-04-2016 PP4_RS01790 0f2a94533cfb02508fc06640b362cfb7 1004 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 906 990 2.1E-9 T 22-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 PP4_RS01790 0f2a94533cfb02508fc06640b362cfb7 1004 PIRSF PIRSF037980 1 1004 0.0 T 22-04-2016 IPR006277 Sarcosine oxidase, alpha subunit GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 PP4_RS12425 c34d60f6c5bb5c3a497a6267a6ce56ff 500 TIGRFAM TIGR03355 VI_chp_2: type VI secretion protein, EvpB/VC_A0108 family 25 495 1.4E-220 T 22-04-2016 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath PP4_RS12425 c34d60f6c5bb5c3a497a6267a6ce56ff 500 PANTHER PTHR35565:SF3 2 500 3.0E-269 T 22-04-2016 PP4_RS12425 c34d60f6c5bb5c3a497a6267a6ce56ff 500 PANTHER PTHR35565 2 500 3.0E-269 T 22-04-2016 PP4_RS12425 c34d60f6c5bb5c3a497a6267a6ce56ff 500 Pfam PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath 73 495 6.1E-197 T 22-04-2016 IPR010269 Type VI secretion protein, EvpB/VC_A0108, tail sheath PP4_RS05195 f60a18a0c7c1cf43b4250378fa8d405e 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 252 261 3.3E-26 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PP4_RS05195 f60a18a0c7c1cf43b4250378fa8d405e 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 49 68 3.3E-26 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PP4_RS05195 f60a18a0c7c1cf43b4250378fa8d405e 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 131 142 3.3E-26 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PP4_RS05195 f60a18a0c7c1cf43b4250378fa8d405e 306 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 264 287 3.3E-26 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PP4_RS05195 f60a18a0c7c1cf43b4250378fa8d405e 306 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 49 56 - T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PP4_RS05195 f60a18a0c7c1cf43b4250378fa8d405e 306 Gene3D G3DSA:3.40.50.1370 141 286 7.1E-57 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PP4_RS05195 f60a18a0c7c1cf43b4250378fa8d405e 306 SUPERFAMILY SSF53671 3 300 7.33E-102 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PP4_RS05195 f60a18a0c7c1cf43b4250378fa8d405e 306 PANTHER PTHR11405:SF1 1 298 1.3E-139 T 22-04-2016 PP4_RS05195 f60a18a0c7c1cf43b4250378fa8d405e 306 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 3 300 77.949 T 22-04-2016 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 PP4_RS05195 f60a18a0c7c1cf43b4250378fa8d405e 306 Gene3D G3DSA:3.40.50.1370 2 140 1.4E-52 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PP4_RS05195 f60a18a0c7c1cf43b4250378fa8d405e 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 278 289 1.4E-28 T 22-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 PP4_RS05195 f60a18a0c7c1cf43b4250378fa8d405e 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 47 61 1.4E-28 T 22-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 PP4_RS05195 f60a18a0c7c1cf43b4250378fa8d405e 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 80 93 1.4E-28 T 22-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 PP4_RS05195 f60a18a0c7c1cf43b4250378fa8d405e 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 216 226 1.4E-28 T 22-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 PP4_RS05195 f60a18a0c7c1cf43b4250378fa8d405e 306 PRINTS PR00102 Ornithine carbamoyltransferase signature 120 134 1.4E-28 T 22-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 PP4_RS05195 f60a18a0c7c1cf43b4250378fa8d405e 306 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 4 144 3.6E-46 T 22-04-2016 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 PP4_RS05195 f60a18a0c7c1cf43b4250378fa8d405e 306 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 150 297 1.4E-49 T 22-04-2016 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 PP4_RS05195 f60a18a0c7c1cf43b4250378fa8d405e 306 PANTHER PTHR11405 1 298 1.3E-139 T 22-04-2016 PP4_RS05195 f60a18a0c7c1cf43b4250378fa8d405e 306 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 4 299 4.1E-112 T 22-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 PP4_RS14130 344844610661111cd486c22bd2c2d77a 348 SUPERFAMILY SSF53822 75 322 5.8E-55 T 22-04-2016 IPR028082 Periplasmic binding protein-like I PP4_RS14130 344844610661111cd486c22bd2c2d77a 348 Gene3D G3DSA:3.40.50.2300 185 347 2.8E-43 T 22-04-2016 PP4_RS14130 344844610661111cd486c22bd2c2d77a 348 Gene3D G3DSA:1.10.260.40 15 72 1.7E-19 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS14130 344844610661111cd486c22bd2c2d77a 348 PANTHER PTHR30146 16 347 1.5E-101 T 22-04-2016 PP4_RS14130 344844610661111cd486c22bd2c2d77a 348 Pfam PF00356 Bacterial regulatory proteins, lacI family 18 63 9.3E-14 T 22-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PP4_RS14130 344844610661111cd486c22bd2c2d77a 348 SMART SM00354 16 86 9.9E-21 T 22-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PP4_RS14130 344844610661111cd486c22bd2c2d77a 348 SUPERFAMILY SSF47413 16 72 2.91E-14 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS14130 344844610661111cd486c22bd2c2d77a 348 Pfam PF13377 Periplasmic binding protein-like domain 184 347 2.0E-29 T 22-04-2016 PP4_RS14130 344844610661111cd486c22bd2c2d77a 348 PANTHER PTHR30146:SF2 16 347 1.5E-101 T 22-04-2016 PP4_RS14130 344844610661111cd486c22bd2c2d77a 348 Gene3D G3DSA:3.40.50.2300 75 184 1.8E-32 T 22-04-2016 PP4_RS06115 a4aeaaa55433aeb9bf43d9e41cf2984e 308 PANTHER PTHR33442 2 307 1.6E-137 T 22-04-2016 PP4_RS06115 a4aeaaa55433aeb9bf43d9e41cf2984e 308 SUPERFAMILY SSF54506 2 308 1.21E-99 T 22-04-2016 PP4_RS06115 a4aeaaa55433aeb9bf43d9e41cf2984e 308 PIRSF PIRSF029792 1 308 5.0E-107 T 22-04-2016 IPR008794 Proline racemase family PP4_RS06115 a4aeaaa55433aeb9bf43d9e41cf2984e 308 Gene3D G3DSA:3.10.310.10 144 297 9.1E-55 T 22-04-2016 PP4_RS06115 a4aeaaa55433aeb9bf43d9e41cf2984e 308 Pfam PF05544 Proline racemase 6 308 5.3E-102 T 22-04-2016 IPR008794 Proline racemase family PP4_RS06115 a4aeaaa55433aeb9bf43d9e41cf2984e 308 PANTHER PTHR33442:SF2 2 307 1.6E-137 T 22-04-2016 PP4_RS06115 a4aeaaa55433aeb9bf43d9e41cf2984e 308 Gene3D G3DSA:3.10.310.10 2 143 1.8E-50 T 22-04-2016 PP4_RS21990 a7eb0efcd9352e722d68693cdeede457 172 PANTHER PTHR38101:SF1 1 172 7.9E-64 T 22-04-2016 PP4_RS21990 a7eb0efcd9352e722d68693cdeede457 172 Hamap MF_00765 UPF0307 protein YjgA [yjgA]. 1 166 21.768 T 22-04-2016 IPR006839 Ribosome-associated, YjgA PP4_RS21990 a7eb0efcd9352e722d68693cdeede457 172 SUPERFAMILY SSF158710 22 165 5.36E-49 T 22-04-2016 PP4_RS21990 a7eb0efcd9352e722d68693cdeede457 172 PIRSF PIRSF016183 1 170 3.5E-65 T 22-04-2016 IPR006839 Ribosome-associated, YjgA PP4_RS21990 a7eb0efcd9352e722d68693cdeede457 172 Gene3D G3DSA:1.10.60.30 98 166 9.2E-29 T 22-04-2016 IPR023153 PSPTO4464-like domain PP4_RS21990 a7eb0efcd9352e722d68693cdeede457 172 PANTHER PTHR38101 1 172 7.9E-64 T 22-04-2016 PP4_RS21990 a7eb0efcd9352e722d68693cdeede457 172 Gene3D G3DSA:1.10.60.30 22 96 7.9E-26 T 22-04-2016 IPR023153 PSPTO4464-like domain PP4_RS21990 a7eb0efcd9352e722d68693cdeede457 172 Pfam PF04751 Protein of unknown function (DUF615) 11 162 4.9E-53 T 22-04-2016 IPR006839 Ribosome-associated, YjgA PP4_RS23620 95235c2eb11f387a6075392e2b3e33c4 978 Pfam PF05359 Domain of Unknown Function (DUF748) 140 291 1.4E-32 T 22-04-2016 IPR008023 Protein of unknown function DUF748 PP4_RS23620 95235c2eb11f387a6075392e2b3e33c4 978 Pfam PF05359 Domain of Unknown Function (DUF748) 581 725 1.3E-40 T 22-04-2016 IPR008023 Protein of unknown function DUF748 PP4_RS23620 95235c2eb11f387a6075392e2b3e33c4 978 Pfam PF05359 Domain of Unknown Function (DUF748) 365 516 1.1E-35 T 22-04-2016 IPR008023 Protein of unknown function DUF748 PP4_RS23620 95235c2eb11f387a6075392e2b3e33c4 978 PANTHER PTHR30441 1 757 5.0E-117 T 22-04-2016 PP4_RS23620 95235c2eb11f387a6075392e2b3e33c4 978 PANTHER PTHR30441 811 883 5.0E-117 T 22-04-2016 PP4_RS23620 95235c2eb11f387a6075392e2b3e33c4 978 Gene3D G3DSA:3.30.1330.60 793 837 2.9E-10 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS23620 95235c2eb11f387a6075392e2b3e33c4 978 Gene3D G3DSA:3.30.1330.60 923 953 2.9E-10 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS23620 95235c2eb11f387a6075392e2b3e33c4 978 PANTHER PTHR30441:SF2 1 757 5.0E-117 T 22-04-2016 PP4_RS23620 95235c2eb11f387a6075392e2b3e33c4 978 PANTHER PTHR30441:SF2 811 883 5.0E-117 T 22-04-2016 PP4_RS23620 95235c2eb11f387a6075392e2b3e33c4 978 SUPERFAMILY SSF103088 793 833 6.15E-5 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS23620 95235c2eb11f387a6075392e2b3e33c4 978 Pfam PF00691 OmpA family 797 836 4.2E-5 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS16535 d555e939bca0b1ad5a3a1647934eb5fe 301 Gene3D G3DSA:3.40.190.10 94 179 7.1E-26 T 22-04-2016 PP4_RS16535 d555e939bca0b1ad5a3a1647934eb5fe 301 PANTHER PTHR30346:SF13 3 301 9.2E-169 T 22-04-2016 PP4_RS16535 d555e939bca0b1ad5a3a1647934eb5fe 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 1.0E-19 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16535 d555e939bca0b1ad5a3a1647934eb5fe 301 SUPERFAMILY SSF53850 93 300 1.36E-40 T 22-04-2016 PP4_RS16535 d555e939bca0b1ad5a3a1647934eb5fe 301 Gene3D G3DSA:3.40.190.10 180 268 5.3E-37 T 22-04-2016 PP4_RS16535 d555e939bca0b1ad5a3a1647934eb5fe 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 2.6E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16535 d555e939bca0b1ad5a3a1647934eb5fe 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 2.6E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16535 d555e939bca0b1ad5a3a1647934eb5fe 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 2.6E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16535 d555e939bca0b1ad5a3a1647934eb5fe 301 PANTHER PTHR30346 3 301 9.2E-169 T 22-04-2016 PP4_RS16535 d555e939bca0b1ad5a3a1647934eb5fe 301 Gene3D G3DSA:1.10.10.10 5 84 1.9E-26 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16535 d555e939bca0b1ad5a3a1647934eb5fe 301 SUPERFAMILY SSF46785 4 115 2.73E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16535 d555e939bca0b1ad5a3a1647934eb5fe 301 Pfam PF03466 LysR substrate binding domain 92 298 7.3E-43 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS22265 21f3ed6141c406c5981631b01303ff83 369 SUPERFAMILY SSF51412 24 132 2.56E-10 T 22-04-2016 PP4_RS22265 21f3ed6141c406c5981631b01303ff83 369 PIRSF PIRSF004640 1 362 1.7E-149 T 22-04-2016 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial GO:0005506|GO:0008299|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 PP4_RS22265 21f3ed6141c406c5981631b01303ff83 369 Gene3D G3DSA:3.20.20.70 27 132 4.1E-11 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS22265 21f3ed6141c406c5981631b01303ff83 369 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 9 351 6.5E-131 T 22-04-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 PP4_RS22265 21f3ed6141c406c5981631b01303ff83 369 SUPERFAMILY SSF56014 265 352 5.89E-12 T 22-04-2016 PP4_RS22265 21f3ed6141c406c5981631b01303ff83 369 Pfam PF04551 GcpE protein 13 352 6.8E-136 T 22-04-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 PP4_RS22265 21f3ed6141c406c5981631b01303ff83 369 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 7 359 35.267 T 22-04-2016 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3|UniPathway: UPA00056 PP4_RS22265 21f3ed6141c406c5981631b01303ff83 369 PANTHER PTHR30454 1 369 4.6E-214 T 22-04-2016 PP4_RS20915 678568a27dd668be56a0de3616289c98 157 PANTHER PTHR32125 1 155 4.8E-61 T 22-04-2016 PP4_RS20915 678568a27dd668be56a0de3616289c98 157 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 1 156 36.631 T 22-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 PP4_RS20915 678568a27dd668be56a0de3616289c98 157 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 35 50 - T 22-04-2016 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 PP4_RS20915 678568a27dd668be56a0de3616289c98 157 Gene3D G3DSA:3.30.1330.50 1 155 1.5E-72 T 22-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 PP4_RS20915 678568a27dd668be56a0de3616289c98 157 SUPERFAMILY SSF69765 1 155 1.02E-67 T 22-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 PP4_RS20915 678568a27dd668be56a0de3616289c98 157 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2 154 1.8E-72 T 22-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 PP4_RS20915 678568a27dd668be56a0de3616289c98 157 Pfam PF02542 YgbB family 1 154 1.3E-67 T 22-04-2016 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560|UniPathway: UPA00056 PP4_RS16625 e67fe2015c01ca701483e80337569aa8 169 Pfam PF04542 Sigma-70 region 2 15 80 9.5E-13 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS16625 e67fe2015c01ca701483e80337569aa8 169 Pfam PF08281 Sigma-70, region 4 111 163 6.3E-17 T 22-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS16625 e67fe2015c01ca701483e80337569aa8 169 PANTHER PTHR30173:SF9 9 163 7.5E-40 T 22-04-2016 PP4_RS16625 e67fe2015c01ca701483e80337569aa8 169 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 11 162 1.5E-22 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS16625 e67fe2015c01ca701483e80337569aa8 169 Gene3D G3DSA:1.10.10.10 108 163 3.5E-14 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16625 e67fe2015c01ca701483e80337569aa8 169 SUPERFAMILY SSF88659 105 163 3.05E-14 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS16625 e67fe2015c01ca701483e80337569aa8 169 SUPERFAMILY SSF88946 9 99 2.55E-14 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS16625 e67fe2015c01ca701483e80337569aa8 169 Gene3D G3DSA:1.10.1740.10 9 102 3.1E-12 T 22-04-2016 PP4_RS16625 e67fe2015c01ca701483e80337569aa8 169 PANTHER PTHR30173 9 163 7.5E-40 T 22-04-2016 PP4_RS16285 990dd251092ee514cd23f6b3ff68730e 254 PANTHER PTHR30136 6 254 3.7E-62 T 22-04-2016 PP4_RS16285 990dd251092ee514cd23f6b3ff68730e 254 SUPERFAMILY SSF55781 74 250 6.38E-43 T 22-04-2016 IPR029016 GAF domain-like PP4_RS16285 990dd251092ee514cd23f6b3ff68730e 254 SUPERFAMILY SSF46785 12 81 1.6E-10 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16285 990dd251092ee514cd23f6b3ff68730e 254 SMART SM00346 10 98 1.0E-20 T 22-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 PP4_RS16285 990dd251092ee514cd23f6b3ff68730e 254 Gene3D G3DSA:1.10.10.10 3 69 2.4E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16285 990dd251092ee514cd23f6b3ff68730e 254 Gene3D G3DSA:3.30.450.40 76 251 3.3E-47 T 22-04-2016 IPR029016 GAF domain-like PP4_RS16285 990dd251092ee514cd23f6b3ff68730e 254 TIGRFAM TIGR02431 pcaR_pcaU: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family 7 253 8.3E-94 T 22-04-2016 IPR012794 Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR GO:0003677|GO:0045893|GO:0046278 PP4_RS16285 990dd251092ee514cd23f6b3ff68730e 254 PANTHER PTHR30136:SF10 6 254 3.7E-62 T 22-04-2016 PP4_RS16285 990dd251092ee514cd23f6b3ff68730e 254 Pfam PF01614 Bacterial transcriptional regulator 128 246 3.7E-27 T 22-04-2016 IPR014757 Transcription regulator IclR, C-terminal PP4_RS16285 990dd251092ee514cd23f6b3ff68730e 254 Pfam PF09339 IclR helix-turn-helix domain 13 62 1.9E-12 T 22-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 PP4_RS05040 3b3d14cc03ac33cf4db7070d7b3bcd9e 247 PIRSF PIRSF006325 2 247 7.2E-108 T 22-04-2016 IPR005271 tRNA (cmo5U34)-methyltransferase GO:0002098|GO:0016300 PP4_RS05040 3b3d14cc03ac33cf4db7070d7b3bcd9e 247 SUPERFAMILY SSF53335 22 245 4.8E-34 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS05040 3b3d14cc03ac33cf4db7070d7b3bcd9e 247 Gene3D G3DSA:3.40.50.150 21 245 2.1E-53 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS05040 3b3d14cc03ac33cf4db7070d7b3bcd9e 247 PANTHER PTHR10108 6 246 4.5E-89 T 22-04-2016 PP4_RS05040 3b3d14cc03ac33cf4db7070d7b3bcd9e 247 Pfam PF13649 Methyltransferase domain 63 163 3.3E-11 T 22-04-2016 PP4_RS05040 3b3d14cc03ac33cf4db7070d7b3bcd9e 247 PANTHER PTHR10108:SF809 6 246 4.5E-89 T 22-04-2016 PP4_RS05040 3b3d14cc03ac33cf4db7070d7b3bcd9e 247 TIGRFAM TIGR00740 TIGR00740: tRNA (cmo5U34)-methyltransferase 6 246 9.3E-87 T 22-04-2016 IPR005271 tRNA (cmo5U34)-methyltransferase GO:0002098|GO:0016300 PP4_RS05040 3b3d14cc03ac33cf4db7070d7b3bcd9e 247 Hamap MF_01589 tRNA (cmo5U34)-methyltransferase [cmoA]. 4 247 39.989 T 22-04-2016 IPR005271 tRNA (cmo5U34)-methyltransferase GO:0002098|GO:0016300 PP4_RS06870 f4608766f66c76e9de0ef6ec5279f9e4 874 PANTHER PTHR11777 1 874 0.0 T 22-04-2016 PP4_RS06870 f4608766f66c76e9de0ef6ec5279f9e4 874 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 5 853 0.0 T 22-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 PP4_RS06870 f4608766f66c76e9de0ef6ec5279f9e4 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 74 85 1.1E-30 T 22-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 PP4_RS06870 f4608766f66c76e9de0ef6ec5279f9e4 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 304 317 1.1E-30 T 22-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 PP4_RS06870 f4608766f66c76e9de0ef6ec5279f9e4 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 234 247 1.1E-30 T 22-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 PP4_RS06870 f4608766f66c76e9de0ef6ec5279f9e4 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 280 296 1.1E-30 T 22-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 PP4_RS06870 f4608766f66c76e9de0ef6ec5279f9e4 874 PRINTS PR00980 Alanyl-tRNA synthetase signature 207 218 1.1E-30 T 22-04-2016 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7|Reactome: REACT_71 PP4_RS06870 f4608766f66c76e9de0ef6ec5279f9e4 874 SUPERFAMILY SSF50447 453 550 7.77E-20 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain PP4_RS06870 f4608766f66c76e9de0ef6ec5279f9e4 874 SUPERFAMILY SSF55681 2 253 1.12E-105 T 22-04-2016 PP4_RS06870 f4608766f66c76e9de0ef6ec5279f9e4 874 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 874 204.3 T 22-04-2016 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 PP4_RS06870 f4608766f66c76e9de0ef6ec5279f9e4 874 PANTHER PTHR11777:SF9 1 874 0.0 T 22-04-2016 PP4_RS06870 f4608766f66c76e9de0ef6ec5279f9e4 874 Gene3D G3DSA:3.30.930.10 1 249 4.1E-124 T 22-04-2016 PP4_RS06870 f4608766f66c76e9de0ef6ec5279f9e4 874 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 651 695 2.0E-15 T 22-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 PP4_RS06870 f4608766f66c76e9de0ef6ec5279f9e4 874 Pfam PF01411 tRNA synthetases class II (A) 5 553 2.6E-226 T 22-04-2016 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 PP4_RS06870 f4608766f66c76e9de0ef6ec5279f9e4 874 SUPERFAMILY SSF101353 254 463 2.35E-62 T 22-04-2016 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7|Reactome: REACT_71 PP4_RS06870 f4608766f66c76e9de0ef6ec5279f9e4 874 SUPERFAMILY SSF55186 550 707 4.71E-49 T 22-04-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 PP4_RS06870 f4608766f66c76e9de0ef6ec5279f9e4 874 SMART SM00863 651 695 1.1E-18 T 22-04-2016 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0005524|GO:0016876|GO:0043039 PP4_RS06870 f4608766f66c76e9de0ef6ec5279f9e4 874 Pfam PF02272 DHHA1 domain 799 866 6.1E-15 T 22-04-2016 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7 PP4_RS03960 ee8cb63d19df31759ecb58ce64a4ad28 315 SUPERFAMILY SSF46785 4 86 5.34E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS03960 ee8cb63d19df31759ecb58ce64a4ad28 315 PANTHER PTHR30126 1 309 5.0E-143 T 22-04-2016 PP4_RS03960 ee8cb63d19df31759ecb58ce64a4ad28 315 Gene3D G3DSA:1.10.10.10 3 86 2.5E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS03960 ee8cb63d19df31759ecb58ce64a4ad28 315 Gene3D G3DSA:3.40.190.10 92 178 1.2E-18 T 22-04-2016 PP4_RS03960 ee8cb63d19df31759ecb58ce64a4ad28 315 SUPERFAMILY SSF53850 90 299 3.62E-39 T 22-04-2016 PP4_RS03960 ee8cb63d19df31759ecb58ce64a4ad28 315 PANTHER PTHR30126:SF26 1 309 5.0E-143 T 22-04-2016 PP4_RS03960 ee8cb63d19df31759ecb58ce64a4ad28 315 Pfam PF03466 LysR substrate binding domain 88 295 3.1E-38 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS03960 ee8cb63d19df31759ecb58ce64a4ad28 315 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 9.3E-19 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS03960 ee8cb63d19df31759ecb58ce64a4ad28 315 Gene3D G3DSA:3.40.190.10 179 263 2.5E-19 T 22-04-2016 PP4_RS02965 b435992388e89663935fa4266719bd81 74 SMART SM00530 11 66 2.8E-13 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS02965 b435992388e89663935fa4266719bd81 74 Pfam PF01381 Helix-turn-helix 12 65 1.3E-15 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS02965 b435992388e89663935fa4266719bd81 74 Gene3D G3DSA:1.10.260.40 2 68 1.8E-19 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS02965 b435992388e89663935fa4266719bd81 74 SUPERFAMILY SSF47413 4 68 4.5E-17 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS12880 414b2cd1df9b7830c848e32f677c7d42 358 PANTHER PTHR40031 2 324 5.7E-46 T 22-04-2016 PP4_RS12880 414b2cd1df9b7830c848e32f677c7d42 358 PANTHER PTHR40031:SF1 2 324 5.7E-46 T 22-04-2016 PP4_RS12880 414b2cd1df9b7830c848e32f677c7d42 358 Pfam PF04307 LexA-binding, inner membrane-associated putative hydrolase 2 177 1.1E-29 T 22-04-2016 IPR007404 LexA-binding, inner membrane-associated putative hydrolase PP4_RS22215 5c5f265da389d3c48bc790a3cd984423 226 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 84 176 1.5E-14 T 22-04-2016 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 PP4_RS22215 5c5f265da389d3c48bc790a3cd984423 226 SMART SM00702 1 177 6.4E-29 T 22-04-2016 IPR006620 Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016705|GO:0031418|GO:0055114 PP4_RS22215 5c5f265da389d3c48bc790a3cd984423 226 PANTHER PTHR41536 2 226 3.8E-124 T 22-04-2016 PP4_RS22215 5c5f265da389d3c48bc790a3cd984423 226 SUPERFAMILY SSF51197 60 176 4.46E-7 T 22-04-2016 PP4_RS22215 5c5f265da389d3c48bc790a3cd984423 226 SUPERFAMILY SSF51197 3 33 4.46E-7 T 22-04-2016 PP4_RS22215 5c5f265da389d3c48bc790a3cd984423 226 Hamap MF_00657 PKHD-type hydroxylase YbiX [ybiX]. 1 226 45.929 T 22-04-2016 IPR023550 PKHD-type hydroxylase GO:0016706|GO:0055114 PP4_RS22215 5c5f265da389d3c48bc790a3cd984423 226 PANTHER PTHR41536:SF1 2 226 3.8E-124 T 22-04-2016 PP4_RS23990 8f10c7a59a3280ad7ba5c889bd0233e7 826 Gene3D G3DSA:3.40.50.300 123 252 4.2E-15 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23990 8f10c7a59a3280ad7ba5c889bd0233e7 826 SMART SM00487 116 293 1.2E-5 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PP4_RS23990 8f10c7a59a3280ad7ba5c889bd0233e7 826 SMART SM00490 381 474 0.0016 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS23990 8f10c7a59a3280ad7ba5c889bd0233e7 826 Gene3D G3DSA:3.40.50.300 329 474 8.3E-10 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23990 8f10c7a59a3280ad7ba5c889bd0233e7 826 Pfam PF04851 Type III restriction enzyme, res subunit 133 243 3.3E-8 T 22-04-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 PP4_RS23990 8f10c7a59a3280ad7ba5c889bd0233e7 826 SUPERFAMILY SSF52540 397 474 9.01E-21 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23990 8f10c7a59a3280ad7ba5c889bd0233e7 826 SUPERFAMILY SSF52540 138 366 9.01E-21 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS14330 2dec74d391ddd3face3dcd9fb57e5692 471 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 11 461 4.4E-104 T 22-04-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 PP4_RS14330 2dec74d391ddd3face3dcd9fb57e5692 471 Pfam PF02321 Outer membrane efflux protein 281 449 9.1E-21 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PP4_RS14330 2dec74d391ddd3face3dcd9fb57e5692 471 Pfam PF02321 Outer membrane efflux protein 62 250 3.1E-20 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PP4_RS14330 2dec74d391ddd3face3dcd9fb57e5692 471 Gene3D G3DSA:1.20.1600.10 53 88 1.6E-91 T 22-04-2016 PP4_RS14330 2dec74d391ddd3face3dcd9fb57e5692 471 Gene3D G3DSA:1.20.1600.10 348 462 1.6E-91 T 22-04-2016 PP4_RS14330 2dec74d391ddd3face3dcd9fb57e5692 471 Gene3D G3DSA:1.20.1600.10 138 310 1.6E-91 T 22-04-2016 PP4_RS14330 2dec74d391ddd3face3dcd9fb57e5692 471 Gene3D G3DSA:2.20.200.10 116 137 1.2E-12 T 22-04-2016 PP4_RS14330 2dec74d391ddd3face3dcd9fb57e5692 471 Gene3D G3DSA:2.20.200.10 311 343 1.2E-12 T 22-04-2016 PP4_RS14330 2dec74d391ddd3face3dcd9fb57e5692 471 PANTHER PTHR30203:SF13 14 464 1.2E-186 T 22-04-2016 PP4_RS14330 2dec74d391ddd3face3dcd9fb57e5692 471 PANTHER PTHR30203 14 464 1.2E-186 T 22-04-2016 PP4_RS14330 2dec74d391ddd3face3dcd9fb57e5692 471 SUPERFAMILY SSF56954 3 464 1.96E-100 T 22-04-2016 PP4_RS01450 38fa2e6f9d13d67021141b3c79591634 468 PANTHER PTHR32071:SF40 1 463 7.1E-254 T 22-04-2016 PP4_RS01450 38fa2e6f9d13d67021141b3c79591634 468 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 238 253 - T 22-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PP4_RS01450 38fa2e6f9d13d67021141b3c79591634 468 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 365 374 - T 22-04-2016 IPR025944 Sigma-54 interaction domain, conserved site PP4_RS01450 38fa2e6f9d13d67021141b3c79591634 468 Gene3D G3DSA:3.40.50.300 151 324 2.8E-55 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS01450 38fa2e6f9d13d67021141b3c79591634 468 PANTHER PTHR32071 1 463 7.1E-254 T 22-04-2016 PP4_RS01450 38fa2e6f9d13d67021141b3c79591634 468 SMART SM00448 11 122 4.3E-30 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS01450 38fa2e6f9d13d67021141b3c79591634 468 SUPERFAMILY SSF52172 11 197 1.01E-42 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS01450 38fa2e6f9d13d67021141b3c79591634 468 Pfam PF02954 Bacterial regulatory protein, Fis family 410 450 6.6E-5 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS01450 38fa2e6f9d13d67021141b3c79591634 468 SUPERFAMILY SSF46689 402 452 5.38E-9 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS01450 38fa2e6f9d13d67021141b3c79591634 468 SUPERFAMILY SSF52540 152 381 2.46E-67 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS01450 38fa2e6f9d13d67021141b3c79591634 468 Gene3D G3DSA:3.40.50.2300 10 131 3.0E-34 T 22-04-2016 PP4_RS01450 38fa2e6f9d13d67021141b3c79591634 468 Gene3D G3DSA:1.10.10.60 373 451 7.8E-11 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS01450 38fa2e6f9d13d67021141b3c79591634 468 Pfam PF00072 Response regulator receiver domain 13 122 3.2E-29 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS01450 38fa2e6f9d13d67021141b3c79591634 468 Pfam PF00158 Sigma-54 interaction domain 152 318 5.5E-67 T 22-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 PP4_RS01450 38fa2e6f9d13d67021141b3c79591634 468 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 176 189 - T 22-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 PP4_RS01450 38fa2e6f9d13d67021141b3c79591634 468 SMART SM00382 172 315 6.3E-11 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS01450 38fa2e6f9d13d67021141b3c79591634 468 Gene3D G3DSA:1.10.8.60 325 372 1.2E-19 T 22-04-2016 PP4_RS21715 cda6c97172547e5ec1484891862bb26d 137 PANTHER PTHR35813:SF1 1 133 2.2E-29 T 22-04-2016 PP4_RS21715 cda6c97172547e5ec1484891862bb26d 137 Pfam PF04304 Protein of unknown function (DUF454) 11 125 8.5E-35 T 22-04-2016 IPR007401 Protein of unknown function DUF454 PP4_RS21715 cda6c97172547e5ec1484891862bb26d 137 PANTHER PTHR35813 1 133 2.2E-29 T 22-04-2016 PP4_RS21715 cda6c97172547e5ec1484891862bb26d 137 PIRSF PIRSF016789 10 130 2.3E-30 T 22-04-2016 IPR007401 Protein of unknown function DUF454 PP4_RS25955 06826175878efabdf10b1e256908a2cd 422 PIRSF PIRSF000106 50 419 3.8E-72 T 22-04-2016 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471|GO:0006108|GO:0055114 PP4_RS25955 06826175878efabdf10b1e256908a2cd 422 ProSitePatterns PS00331 Malic enzymes signature. 158 174 - T 22-04-2016 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 PP4_RS25955 06826175878efabdf10b1e256908a2cd 422 Pfam PF03949 Malic enzyme, NAD binding domain 164 353 1.3E-25 T 22-04-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 PP4_RS25955 06826175878efabdf10b1e256908a2cd 422 SUPERFAMILY SSF51735 162 410 1.28E-82 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS25955 06826175878efabdf10b1e256908a2cd 422 SUPERFAMILY SSF53223 9 160 2.16E-50 T 22-04-2016 PP4_RS25955 06826175878efabdf10b1e256908a2cd 422 PANTHER PTHR23406 32 419 1.0E-164 T 22-04-2016 PP4_RS25955 06826175878efabdf10b1e256908a2cd 422 SMART SM01274 17 150 3.9E-75 T 22-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 PP4_RS25955 06826175878efabdf10b1e256908a2cd 422 Gene3D G3DSA:3.40.50.10380 7 159 1.4E-48 T 22-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 PP4_RS25955 06826175878efabdf10b1e256908a2cd 422 Gene3D G3DSA:3.40.50.720 160 413 2.1E-84 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS25955 06826175878efabdf10b1e256908a2cd 422 Pfam PF00390 Malic enzyme, N-terminal domain 114 149 3.1E-4 T 22-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 PP4_RS25955 06826175878efabdf10b1e256908a2cd 422 Pfam PF00390 Malic enzyme, N-terminal domain 22 113 1.2E-20 T 22-04-2016 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 PP4_RS25955 06826175878efabdf10b1e256908a2cd 422 SMART SM00919 162 398 9.7E-141 T 22-04-2016 IPR012302 Malic enzyme, NAD-binding GO:0004471|GO:0051287|GO:0055114 PP4_RS18255 ea3a1b3456cbeaa3e8361eb230a2fc58 106 PANTHER PTHR35893 6 106 9.6E-28 T 22-04-2016 PP4_RS18255 ea3a1b3456cbeaa3e8361eb230a2fc58 106 Pfam PF05957 Bacterial protein of unknown function (DUF883) 17 105 6.1E-23 T 22-04-2016 IPR010279 Protein of unknown function DUF883, ElaB PP4_RS18255 ea3a1b3456cbeaa3e8361eb230a2fc58 106 PANTHER PTHR35893:SF3 6 106 9.6E-28 T 22-04-2016 PP4_RS18255 ea3a1b3456cbeaa3e8361eb230a2fc58 106 SUPERFAMILY SSF58113 8 83 2.22E-5 T 22-04-2016 PP4_RS27420 c9185b6cda13ab2a8b76f476b40a8048 216 Pfam PF02527 rRNA small subunit methyltransferase G 28 209 4.7E-67 T 22-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 PP4_RS27420 c9185b6cda13ab2a8b76f476b40a8048 216 PANTHER PTHR31760:SF0 10 214 7.4E-71 T 22-04-2016 PP4_RS27420 c9185b6cda13ab2a8b76f476b40a8048 216 Gene3D G3DSA:3.40.50.150 5 215 1.3E-64 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS27420 c9185b6cda13ab2a8b76f476b40a8048 216 SUPERFAMILY SSF53335 13 214 4.96E-38 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS27420 c9185b6cda13ab2a8b76f476b40a8048 216 PIRSF PIRSF003078 7 216 1.4E-59 T 22-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 PP4_RS27420 c9185b6cda13ab2a8b76f476b40a8048 216 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 34 213 1.9E-56 T 22-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 PP4_RS27420 c9185b6cda13ab2a8b76f476b40a8048 216 PANTHER PTHR31760 10 214 7.4E-71 T 22-04-2016 PP4_RS27420 c9185b6cda13ab2a8b76f476b40a8048 216 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 21 211 27.569 T 22-04-2016 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 PP4_RS07985 0dc2ea56f24d633b408f96b9f013cea7 122 PANTHER PTHR38689:SF1 2 122 1.1E-52 T 22-04-2016 PP4_RS07985 0dc2ea56f24d633b408f96b9f013cea7 122 PANTHER PTHR38689 2 122 1.1E-52 T 22-04-2016 PP4_RS07985 0dc2ea56f24d633b408f96b9f013cea7 122 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 10 93 4.2E-7 T 22-04-2016 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit GO:0016627 UniPathway: UPA00223 PP4_RS07985 0dc2ea56f24d633b408f96b9f013cea7 122 TIGRFAM TIGR02968 succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein 10 120 5.7E-36 T 22-04-2016 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 UniPathway: UPA00223 PP4_RS07985 0dc2ea56f24d633b408f96b9f013cea7 122 Gene3D G3DSA:1.20.1300.10 1 122 2.8E-37 T 22-04-2016 PP4_RS07985 0dc2ea56f24d633b408f96b9f013cea7 122 PIRSF PIRSF000169 1 122 1.9E-44 T 22-04-2016 IPR014312 Succinate dehydrogenase, hydrophobic membrane anchor GO:0000104|GO:0006099|GO:0016021|GO:0020037 UniPathway: UPA00223 PP4_RS07985 0dc2ea56f24d633b408f96b9f013cea7 122 SUPERFAMILY SSF81343 4 122 1.9E-28 T 22-04-2016 PP4_RS06775 7f393656c84a287262b0256cfd35adbe 399 PANTHER PTHR23517:SF4 10 398 8.1E-141 T 22-04-2016 PP4_RS06775 7f393656c84a287262b0256cfd35adbe 399 Pfam PF07690 Major Facilitator Superfamily 223 398 8.9E-13 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS06775 7f393656c84a287262b0256cfd35adbe 399 PANTHER PTHR23517 10 398 8.1E-141 T 22-04-2016 PP4_RS06775 7f393656c84a287262b0256cfd35adbe 399 Gene3D G3DSA:1.20.1250.20 14 193 1.9E-14 T 22-04-2016 PP4_RS06775 7f393656c84a287262b0256cfd35adbe 399 Gene3D G3DSA:1.20.1250.20 220 393 6.6E-22 T 22-04-2016 PP4_RS06775 7f393656c84a287262b0256cfd35adbe 399 SUPERFAMILY SSF103473 13 393 4.58E-45 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS17475 59b15b66bfc6054aba8dd23dc4c27de1 869 SUPERFAMILY SSF52016 163 372 4.32E-68 T 22-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel PP4_RS17475 59b15b66bfc6054aba8dd23dc4c27de1 869 Pfam PF06434 Aconitate hydratase 2 N-terminus 168 382 7.3E-95 T 22-04-2016 IPR015929 Aconitase B, N-terminal GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747|UniPathway: UPA00223|UniPathway: UPA00946 PP4_RS17475 59b15b66bfc6054aba8dd23dc4c27de1 869 PANTHER PTHR11670 305 861 0.0 T 22-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS17475 59b15b66bfc6054aba8dd23dc4c27de1 869 Gene3D G3DSA:3.20.19.10 163 360 6.4E-90 T 22-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel PP4_RS17475 59b15b66bfc6054aba8dd23dc4c27de1 869 Gene3D G3DSA:3.30.499.10 406 522 2.4E-63 T 22-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS17475 59b15b66bfc6054aba8dd23dc4c27de1 869 Pfam PF00330 Aconitase family (aconitate hydratase) 475 821 4.9E-41 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS17475 59b15b66bfc6054aba8dd23dc4c27de1 869 Pfam PF11791 Aconitate B N-terminal domain 4 156 3.4E-65 T 22-04-2016 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747|UniPathway: UPA00223|UniPathway: UPA00946 PP4_RS17475 59b15b66bfc6054aba8dd23dc4c27de1 869 PIRSF PIRSF036687 1 862 0.0 T 22-04-2016 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747|UniPathway: UPA00223|UniPathway: UPA00946 PP4_RS17475 59b15b66bfc6054aba8dd23dc4c27de1 869 TIGRFAM TIGR00117 acnB: aconitate hydratase 2 1 857 0.0 T 22-04-2016 IPR004406 Aconitase B GO:0003994|GO:0005829|GO:0006099|GO:0051539 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747|UniPathway: UPA00223|UniPathway: UPA00946 PP4_RS17475 59b15b66bfc6054aba8dd23dc4c27de1 869 SUPERFAMILY SSF74778 2 160 6.15E-68 T 22-04-2016 IPR015933 Aconitase B, HEAT-like domain GO:0003994|GO:0006099 KEGG: 00020+4.2.1.3|KEGG: 00630+4.2.1.3|KEGG: 00640+4.2.1.99|KEGG: 00720+4.2.1.3|MetaCyc: PWY-5747|UniPathway: UPA00223|UniPathway: UPA00946 PP4_RS17475 59b15b66bfc6054aba8dd23dc4c27de1 869 SUPERFAMILY SSF53732 379 858 1.7E-147 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS17475 59b15b66bfc6054aba8dd23dc4c27de1 869 Gene3D G3DSA:3.30.499.10 687 867 9.0E-54 T 22-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS17475 59b15b66bfc6054aba8dd23dc4c27de1 869 Gene3D G3DSA:3.40.1060.10 523 685 2.2E-83 T 22-04-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS17475 59b15b66bfc6054aba8dd23dc4c27de1 869 ProSitePatterns PS00450 Aconitase family signature 1. 705 722 - T 22-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS17475 59b15b66bfc6054aba8dd23dc4c27de1 869 PANTHER PTHR11670:SF39 305 861 0.0 T 22-04-2016 PP4_RS17030 65d4289a2613798a5b1e33bd70815828 336 PANTHER PTHR30535:SF7 8 314 2.4E-28 T 22-04-2016 PP4_RS17030 65d4289a2613798a5b1e33bd70815828 336 Gene3D G3DSA:3.40.50.1980 42 182 9.0E-14 T 22-04-2016 PP4_RS17030 65d4289a2613798a5b1e33bd70815828 336 Pfam PF01497 Periplasmic binding protein 46 310 9.1E-49 T 22-04-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 PP4_RS17030 65d4289a2613798a5b1e33bd70815828 336 SUPERFAMILY SSF53807 42 329 4.32E-41 T 22-04-2016 PP4_RS17030 65d4289a2613798a5b1e33bd70815828 336 PANTHER PTHR30535 8 314 2.4E-28 T 22-04-2016 PP4_RS17030 65d4289a2613798a5b1e33bd70815828 336 Gene3D G3DSA:3.40.50.1980 183 329 5.4E-23 T 22-04-2016 PP4_RS10305 7161e14c83e716bc69efacef668b119e 273 PANTHER PTHR24422:SF8 1 272 3.6E-100 T 22-04-2016 PP4_RS10305 7161e14c83e716bc69efacef668b119e 273 Gene3D G3DSA:3.40.50.150 74 270 1.3E-59 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS10305 7161e14c83e716bc69efacef668b119e 273 Pfam PF01739 CheR methyltransferase, SAM binding domain 76 255 7.1E-39 T 22-04-2016 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal PP4_RS10305 7161e14c83e716bc69efacef668b119e 273 SMART SM00138 8 271 2.9E-33 T 22-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 PP4_RS10305 7161e14c83e716bc69efacef668b119e 273 SUPERFAMILY SSF53335 75 269 1.59E-43 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS10305 7161e14c83e716bc69efacef668b119e 273 PANTHER PTHR24422 1 272 3.6E-100 T 22-04-2016 PP4_RS10305 7161e14c83e716bc69efacef668b119e 273 PRINTS PR00996 Glutamate methyltransferase family signature 103 123 6.7E-24 T 22-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 PP4_RS10305 7161e14c83e716bc69efacef668b119e 273 PRINTS PR00996 Glutamate methyltransferase family signature 135 151 6.7E-24 T 22-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 PP4_RS10305 7161e14c83e716bc69efacef668b119e 273 PRINTS PR00996 Glutamate methyltransferase family signature 228 251 6.7E-24 T 22-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 PP4_RS10305 7161e14c83e716bc69efacef668b119e 273 PRINTS PR00996 Glutamate methyltransferase family signature 209 223 6.7E-24 T 22-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 PP4_RS10305 7161e14c83e716bc69efacef668b119e 273 PRINTS PR00996 Glutamate methyltransferase family signature 67 79 6.7E-24 T 22-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 PP4_RS10305 7161e14c83e716bc69efacef668b119e 273 Pfam PF03705 CheR methyltransferase, all-alpha domain 10 61 2.6E-9 T 22-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal PP4_RS19545 76ecf0bc75883b924e3477eb15b35961 318 SMART SM00363 23 82 7.7E-8 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 PP4_RS19545 76ecf0bc75883b924e3477eb15b35961 318 PANTHER PTHR11079:SF84 7 315 2.2E-137 T 22-04-2016 PP4_RS19545 76ecf0bc75883b924e3477eb15b35961 318 SUPERFAMILY SSF55174 22 74 9.59E-9 T 22-04-2016 PP4_RS19545 76ecf0bc75883b924e3477eb15b35961 318 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 20 313 1.7E-78 T 22-04-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS19545 76ecf0bc75883b924e3477eb15b35961 318 PANTHER PTHR11079 7 315 2.2E-137 T 22-04-2016 PP4_RS19545 76ecf0bc75883b924e3477eb15b35961 318 SUPERFAMILY SSF55120 92 316 8.32E-59 T 22-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS19545 76ecf0bc75883b924e3477eb15b35961 318 Gene3D G3DSA:3.10.290.10 23 71 3.6E-7 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 PP4_RS19545 76ecf0bc75883b924e3477eb15b35961 318 Pfam PF00849 RNA pseudouridylate synthase 104 251 4.1E-32 T 22-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS19545 76ecf0bc75883b924e3477eb15b35961 318 Pfam PF01479 S4 domain 23 69 8.7E-8 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 PP4_RS19545 76ecf0bc75883b924e3477eb15b35961 318 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 142 156 - T 22-04-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS25945 8e8fcb1e931da50c2cb5d0fb09e4f3cc 293 PANTHER PTHR32432:SF3 1 198 1.6E-23 T 22-04-2016 PP4_RS25945 8e8fcb1e931da50c2cb5d0fb09e4f3cc 293 SUPERFAMILY SSF53067 51 174 3.11E-13 T 22-04-2016 PP4_RS25945 8e8fcb1e931da50c2cb5d0fb09e4f3cc 293 PANTHER PTHR32432 1 198 1.6E-23 T 22-04-2016 PP4_RS25945 8e8fcb1e931da50c2cb5d0fb09e4f3cc 293 Pfam PF11104 Type IV pilus assembly protein PilM; 14 176 2.8E-32 T 22-04-2016 IPR005883 Type IV pilus assembly protein PilM PP4_RS09830 fb18e374f6100841f5217dee3be1157a 460 PANTHER PTHR11751 80 456 3.4E-142 T 22-04-2016 PP4_RS09830 fb18e374f6100841f5217dee3be1157a 460 Gene3D G3DSA:3.40.640.10 134 355 8.3E-61 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS09830 fb18e374f6100841f5217dee3be1157a 460 Gene3D G3DSA:3.90.1150.10 356 440 1.6E-11 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS09830 fb18e374f6100841f5217dee3be1157a 460 SUPERFAMILY SSF53383 85 456 3.81E-79 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS09830 fb18e374f6100841f5217dee3be1157a 460 PANTHER PTHR11751:SF386 80 456 3.4E-142 T 22-04-2016 PP4_RS09830 fb18e374f6100841f5217dee3be1157a 460 SMART SM00345 11 70 3.3E-14 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS09830 fb18e374f6100841f5217dee3be1157a 460 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 70 1.2E-14 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS09830 fb18e374f6100841f5217dee3be1157a 460 SUPERFAMILY SSF46785 4 74 1.03E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS09830 fb18e374f6100841f5217dee3be1157a 460 Gene3D G3DSA:1.10.10.10 6 71 1.4E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS09830 fb18e374f6100841f5217dee3be1157a 460 Pfam PF00155 Aminotransferase class I and II 126 448 5.2E-35 T 22-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PP4_RS16350 30b6652b68b4529658ee2c11e4d2a5f5 258 SUPERFAMILY SSF46785 6 76 2.84E-16 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16350 30b6652b68b4529658ee2c11e4d2a5f5 258 PANTHER PTHR30136:SF13 6 249 3.1E-80 T 22-04-2016 PP4_RS16350 30b6652b68b4529658ee2c11e4d2a5f5 258 SMART SM00346 6 92 4.2E-19 T 22-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 PP4_RS16350 30b6652b68b4529658ee2c11e4d2a5f5 258 Pfam PF01614 Bacterial transcriptional regulator 123 249 3.4E-21 T 22-04-2016 IPR014757 Transcription regulator IclR, C-terminal PP4_RS16350 30b6652b68b4529658ee2c11e4d2a5f5 258 Gene3D G3DSA:3.30.450.40 80 250 2.2E-45 T 22-04-2016 IPR029016 GAF domain-like PP4_RS16350 30b6652b68b4529658ee2c11e4d2a5f5 258 PANTHER PTHR30136 6 249 3.1E-80 T 22-04-2016 PP4_RS16350 30b6652b68b4529658ee2c11e4d2a5f5 258 SUPERFAMILY SSF55781 79 250 4.77E-35 T 22-04-2016 IPR029016 GAF domain-like PP4_RS16350 30b6652b68b4529658ee2c11e4d2a5f5 258 Gene3D G3DSA:1.10.10.10 6 77 9.8E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16350 30b6652b68b4529658ee2c11e4d2a5f5 258 Pfam PF09339 IclR helix-turn-helix domain 6 55 7.4E-16 T 22-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 PP4_RS04375 cb59b55e28a180d287b26ad4633ca3f8 314 Gene3D G3DSA:3.20.20.70 122 311 1.0E-34 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS04375 cb59b55e28a180d287b26ad4633ca3f8 314 Pfam PF02581 Thiamine monophosphate synthase/TENI 132 310 7.4E-33 T 22-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 PP4_RS04375 cb59b55e28a180d287b26ad4633ca3f8 314 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 22-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 PP4_RS04375 cb59b55e28a180d287b26ad4633ca3f8 314 PRINTS PR00502 NUDIX hydrolase family signature 33 47 3.0E-8 T 22-04-2016 IPR020476 NUDIX hydrolase PP4_RS04375 cb59b55e28a180d287b26ad4633ca3f8 314 PRINTS PR00502 NUDIX hydrolase family signature 47 62 3.0E-8 T 22-04-2016 IPR020476 NUDIX hydrolase PP4_RS04375 cb59b55e28a180d287b26ad4633ca3f8 314 SUPERFAMILY SSF51391 114 311 1.83E-42 T 22-04-2016 IPR022998 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 PP4_RS04375 cb59b55e28a180d287b26ad4633ca3f8 314 SUPERFAMILY SSF55811 2 126 6.36E-38 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PP4_RS04375 cb59b55e28a180d287b26ad4633ca3f8 314 Gene3D G3DSA:3.90.79.10 3 121 5.8E-37 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PP4_RS04375 cb59b55e28a180d287b26ad4633ca3f8 314 TIGRFAM TIGR00586 mutt: mutator mutT protein 2 125 1.9E-34 T 22-04-2016 IPR003561 Mutator MutT GO:0006281|GO:0008413 MetaCyc: PWY-6502 PP4_RS04375 cb59b55e28a180d287b26ad4633ca3f8 314 Pfam PF00293 NUDIX domain 6 124 3.4E-20 T 22-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 PP4_RS04375 cb59b55e28a180d287b26ad4633ca3f8 314 PANTHER PTHR22769:SF35 2 187 1.1E-51 T 22-04-2016 PP4_RS04375 cb59b55e28a180d287b26ad4633ca3f8 314 PANTHER PTHR22769 2 187 1.1E-51 T 22-04-2016 PP4_RS04315 784a63a6a77cc891cbf401600d32695a 404 PANTHER PTHR30474 1 398 2.6E-159 T 22-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 PP4_RS04315 784a63a6a77cc891cbf401600d32695a 404 Pfam PF01098 Cell cycle protein 26 380 3.2E-100 T 22-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 PP4_RS04315 784a63a6a77cc891cbf401600d32695a 404 TIGRFAM TIGR02614 ftsW: cell division protein FtsW 24 379 2.9E-128 T 22-04-2016 IPR013437 Cell division protein FtsW GO:0009252|GO:0016021|GO:0051301 PP4_RS04315 784a63a6a77cc891cbf401600d32695a 404 Hamap MF_00913 Putative lipid II flippase FtsW [ftsW]. 20 389 39.931 T 22-04-2016 IPR013437 Cell division protein FtsW GO:0009252|GO:0016021|GO:0051301 PP4_RS04315 784a63a6a77cc891cbf401600d32695a 404 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 338 362 - T 22-04-2016 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0007049|GO:0016021 PP4_RS04315 784a63a6a77cc891cbf401600d32695a 404 PANTHER PTHR30474:SF2 1 398 2.6E-159 T 22-04-2016 PP4_RS26465 f8022c79080b90cce0e99b4530bc5f4c 364 PANTHER PTHR30222:SF11 10 364 1.8E-192 T 22-04-2016 PP4_RS26465 f8022c79080b90cce0e99b4530bc5f4c 364 PIRSF PIRSF019574 2 364 5.4E-144 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS26465 f8022c79080b90cce0e99b4530bc5f4c 364 Gene3D G3DSA:3.40.190.10 139 312 2.0E-77 T 22-04-2016 PP4_RS26465 f8022c79080b90cce0e99b4530bc5f4c 364 Gene3D G3DSA:3.40.190.10 43 138 1.4E-11 T 22-04-2016 PP4_RS26465 f8022c79080b90cce0e99b4530bc5f4c 364 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 308 334 1.3E-66 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS26465 f8022c79080b90cce0e99b4530bc5f4c 364 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 123 139 1.3E-66 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS26465 f8022c79080b90cce0e99b4530bc5f4c 364 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 90 103 1.3E-66 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS26465 f8022c79080b90cce0e99b4530bc5f4c 364 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 31 47 1.3E-66 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS26465 f8022c79080b90cce0e99b4530bc5f4c 364 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 74 88 1.3E-66 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS26465 f8022c79080b90cce0e99b4530bc5f4c 364 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 176 195 1.3E-66 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS26465 f8022c79080b90cce0e99b4530bc5f4c 364 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 263 282 1.3E-66 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS26465 f8022c79080b90cce0e99b4530bc5f4c 364 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 153 167 1.3E-66 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS26465 f8022c79080b90cce0e99b4530bc5f4c 364 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 213 232 1.3E-66 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS26465 f8022c79080b90cce0e99b4530bc5f4c 364 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 47 68 1.3E-66 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS26465 f8022c79080b90cce0e99b4530bc5f4c 364 Pfam PF13416 Bacterial extracellular solute-binding protein 43 326 1.2E-33 T 22-04-2016 PP4_RS26465 f8022c79080b90cce0e99b4530bc5f4c 364 SUPERFAMILY SSF53850 26 363 1.33E-103 T 22-04-2016 PP4_RS26465 f8022c79080b90cce0e99b4530bc5f4c 364 PANTHER PTHR30222 10 364 1.8E-192 T 22-04-2016 PP4_RS04720 894420fe76e5b76c6e863eaea5be33d8 263 Gene3D G3DSA:3.40.50.1820 6 260 3.3E-59 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS04720 894420fe76e5b76c6e863eaea5be33d8 263 Pfam PF00561 alpha/beta hydrolase fold 22 245 7.8E-15 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS04720 894420fe76e5b76c6e863eaea5be33d8 263 PANTHER PTHR10992:SF861 4 262 5.0E-125 T 22-04-2016 PP4_RS04720 894420fe76e5b76c6e863eaea5be33d8 263 TIGRFAM TIGR02427 protocat_pcaD: 3-oxoadipate enol-lactonase 11 260 7.8E-98 T 22-04-2016 IPR026968 3-oxoadipate enol-lactonase 1/2 GO:0042952|GO:0047570 KEGG: 00362+3.1.1.24|MetaCyc: PWY-6185|UniPathway: UPA00157 PP4_RS04720 894420fe76e5b76c6e863eaea5be33d8 263 SUPERFAMILY SSF53474 5 260 1.72E-60 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS04720 894420fe76e5b76c6e863eaea5be33d8 263 PANTHER PTHR10992 4 262 5.0E-125 T 22-04-2016 PP4_RS24590 d70c0652d99dcd54168ddec9da580940 423 Gene3D G3DSA:3.40.309.10 229 376 3.3E-40 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PP4_RS24590 d70c0652d99dcd54168ddec9da580940 423 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 325 347 - T 22-04-2016 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 PP4_RS24590 d70c0652d99dcd54168ddec9da580940 423 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 8 418 41.462 T 22-04-2016 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 PP4_RS24590 d70c0652d99dcd54168ddec9da580940 423 PANTHER PTHR11063:SF8 1 422 3.0E-178 T 22-04-2016 PP4_RS24590 d70c0652d99dcd54168ddec9da580940 423 PIRSF PIRSF000151 1 419 2.1E-180 T 22-04-2016 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 PP4_RS24590 d70c0652d99dcd54168ddec9da580940 423 PANTHER PTHR11063 1 422 3.0E-178 T 22-04-2016 PP4_RS24590 d70c0652d99dcd54168ddec9da580940 423 Gene3D G3DSA:3.40.605.10 3 227 5.2E-103 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS24590 d70c0652d99dcd54168ddec9da580940 423 Gene3D G3DSA:3.40.605.10 377 418 5.2E-103 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS24590 d70c0652d99dcd54168ddec9da580940 423 SUPERFAMILY SSF53720 8 418 5.89E-120 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS24590 d70c0652d99dcd54168ddec9da580940 423 Pfam PF00171 Aldehyde dehydrogenase family 14 286 4.1E-18 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PP4_RS24590 d70c0652d99dcd54168ddec9da580940 423 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 16 407 2.5E-147 T 22-04-2016 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 PP4_RS24810 21111bb488fb1d099f97a1dd77625ab7 262 Pfam PF02311 AraC-like ligand binding domain 28 128 2.9E-7 T 22-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PP4_RS24810 21111bb488fb1d099f97a1dd77625ab7 262 PANTHER PTHR11019:SF98 5 262 1.0E-104 T 22-04-2016 PP4_RS24810 21111bb488fb1d099f97a1dd77625ab7 262 Gene3D G3DSA:1.10.10.60 210 258 1.6E-13 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS24810 21111bb488fb1d099f97a1dd77625ab7 262 SMART SM00342 173 255 5.0E-24 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS24810 21111bb488fb1d099f97a1dd77625ab7 262 SUPERFAMILY SSF51182 13 187 3.02E-13 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS24810 21111bb488fb1d099f97a1dd77625ab7 262 Pfam PF12833 Helix-turn-helix domain 179 257 1.2E-23 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS24810 21111bb488fb1d099f97a1dd77625ab7 262 PANTHER PTHR11019 5 262 1.0E-104 T 22-04-2016 PP4_RS24810 21111bb488fb1d099f97a1dd77625ab7 262 SUPERFAMILY SSF46689 209 258 2.82E-10 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS24810 21111bb488fb1d099f97a1dd77625ab7 262 Gene3D G3DSA:1.10.10.60 155 209 1.7E-9 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS24810 21111bb488fb1d099f97a1dd77625ab7 262 Gene3D G3DSA:2.60.120.10 17 88 3.4E-9 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS10965 c5ee68fb0fb45a78edc5f16f9d9e3110 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 93 272 8.1E-21 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS10965 c5ee68fb0fb45a78edc5f16f9d9e3110 281 PANTHER PTHR30614 74 279 3.4E-80 T 22-04-2016 PP4_RS10965 c5ee68fb0fb45a78edc5f16f9d9e3110 281 SUPERFAMILY SSF161098 72 265 4.71E-45 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS10965 c5ee68fb0fb45a78edc5f16f9d9e3110 281 Gene3D G3DSA:1.10.3720.10 73 273 4.8E-49 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS10965 c5ee68fb0fb45a78edc5f16f9d9e3110 281 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 74 168 2.2E-25 T 22-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PP4_RS09040 a6a2b9a32d7bd7b8f44afb4dbb8f8dcd 350 SUPERFAMILY SSF144052 147 336 2.09E-12 T 22-04-2016 PP4_RS04295 d8d72caf0a63cc1d9c314fd796fbdced 495 PANTHER PTHR23135 5 494 2.4E-198 T 22-04-2016 PP4_RS04295 d8d72caf0a63cc1d9c314fd796fbdced 495 SUPERFAMILY SSF53244 337 488 2.9E-47 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PP4_RS04295 d8d72caf0a63cc1d9c314fd796fbdced 495 Gene3D G3DSA:3.40.1390.10 7 95 3.9E-26 T 22-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 PP4_RS04295 d8d72caf0a63cc1d9c314fd796fbdced 495 Pfam PF01225 Mur ligase family, catalytic domain 18 94 3.7E-13 T 22-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 PP4_RS04295 d8d72caf0a63cc1d9c314fd796fbdced 495 Gene3D G3DSA:3.40.1190.10 97 338 4.1E-81 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PP4_RS04295 d8d72caf0a63cc1d9c314fd796fbdced 495 SUPERFAMILY SSF63418 9 95 2.09E-22 T 22-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 PP4_RS04295 d8d72caf0a63cc1d9c314fd796fbdced 495 Gene3D G3DSA:3.90.190.20 339 479 9.7E-56 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PP4_RS04295 d8d72caf0a63cc1d9c314fd796fbdced 495 Pfam PF02875 Mur ligase family, glutamate ligase domain 337 417 1.2E-22 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PP4_RS04295 d8d72caf0a63cc1d9c314fd796fbdced 495 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 18 487 1.1E-155 T 22-04-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 UniPathway: UPA00219 PP4_RS04295 d8d72caf0a63cc1d9c314fd796fbdced 495 PANTHER PTHR23135:SF4 5 494 2.4E-198 T 22-04-2016 PP4_RS04295 d8d72caf0a63cc1d9c314fd796fbdced 495 Pfam PF08245 Mur ligase middle domain 106 314 2.1E-50 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PP4_RS04295 d8d72caf0a63cc1d9c314fd796fbdced 495 SUPERFAMILY SSF53623 97 334 6.8E-75 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PP4_RS04295 d8d72caf0a63cc1d9c314fd796fbdced 495 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 3 487 34.716 T 22-04-2016 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 UniPathway: UPA00219 PP4_RS02580 92c41faf8569294165ab19809be737f0 177 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 38.397 T 22-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 PP4_RS02580 92c41faf8569294165ab19809be737f0 177 SUPERFAMILY SSF56053 83 177 1.61E-36 T 22-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 PP4_RS02580 92c41faf8569294165ab19809be737f0 177 Gene3D G3DSA:3.90.930.12 2 82 4.5E-29 T 22-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 PP4_RS02580 92c41faf8569294165ab19809be737f0 177 PIRSF PIRSF002162 1 177 7.2E-48 T 22-04-2016 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 PP4_RS02580 92c41faf8569294165ab19809be737f0 177 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 22-04-2016 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02580 92c41faf8569294165ab19809be737f0 177 PANTHER PTHR11655 1 176 6.8E-92 T 22-04-2016 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 PP4_RS02580 92c41faf8569294165ab19809be737f0 177 Gene3D G3DSA:3.90.930.12 83 177 1.6E-41 T 22-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 PP4_RS02580 92c41faf8569294165ab19809be737f0 177 PANTHER PTHR11655:SF14 1 176 6.8E-92 T 22-04-2016 PP4_RS02580 92c41faf8569294165ab19809be737f0 177 Pfam PF00347 Ribosomal protein L6 12 82 5.5E-18 T 22-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 PP4_RS02580 92c41faf8569294165ab19809be737f0 177 Pfam PF00347 Ribosomal protein L6 90 164 1.3E-19 T 22-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 PP4_RS02580 92c41faf8569294165ab19809be737f0 177 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 2.9E-77 T 22-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 PP4_RS02580 92c41faf8569294165ab19809be737f0 177 PRINTS PR00059 Ribosomal protein L6 signature 141 162 5.4E-34 T 22-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 PP4_RS02580 92c41faf8569294165ab19809be737f0 177 PRINTS PR00059 Ribosomal protein L6 signature 99 115 5.4E-34 T 22-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 PP4_RS02580 92c41faf8569294165ab19809be737f0 177 PRINTS PR00059 Ribosomal protein L6 signature 71 96 5.4E-34 T 22-04-2016 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 PP4_RS02580 92c41faf8569294165ab19809be737f0 177 SUPERFAMILY SSF56053 1 82 4.84E-24 T 22-04-2016 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 PP4_RS05290 e0c2f6fd3add59de3cbfd3316d96d501 679 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 7 535 3.7E-177 T 22-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 PP4_RS05290 e0c2f6fd3add59de3cbfd3316d96d501 679 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 552 679 1.7E-41 T 22-04-2016 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 PP4_RS05290 e0c2f6fd3add59de3cbfd3316d96d501 679 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 14 25 - T 22-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS05290 e0c2f6fd3add59de3cbfd3316d96d501 679 PRINTS PR01041 Methionyl-tRNA synthetase signature 41 55 9.6E-25 T 22-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 PP4_RS05290 e0c2f6fd3add59de3cbfd3316d96d501 679 PRINTS PR01041 Methionyl-tRNA synthetase signature 290 305 9.6E-25 T 22-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 PP4_RS05290 e0c2f6fd3add59de3cbfd3316d96d501 679 PRINTS PR01041 Methionyl-tRNA synthetase signature 250 261 9.6E-25 T 22-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 PP4_RS05290 e0c2f6fd3add59de3cbfd3316d96d501 679 PRINTS PR01041 Methionyl-tRNA synthetase signature 89 100 9.6E-25 T 22-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 PP4_RS05290 e0c2f6fd3add59de3cbfd3316d96d501 679 PRINTS PR01041 Methionyl-tRNA synthetase signature 9 22 9.6E-25 T 22-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 PP4_RS05290 e0c2f6fd3add59de3cbfd3316d96d501 679 PRINTS PR01041 Methionyl-tRNA synthetase signature 383 394 9.6E-25 T 22-04-2016 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10|Reactome: REACT_71 PP4_RS05290 e0c2f6fd3add59de3cbfd3316d96d501 679 SUPERFAMILY SSF47323 389 547 1.26E-38 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS05290 e0c2f6fd3add59de3cbfd3316d96d501 679 PANTHER PTHR11946 1 634 7.8E-236 T 22-04-2016 PP4_RS05290 e0c2f6fd3add59de3cbfd3316d96d501 679 SUPERFAMILY SSF52374 4 140 2.82E-98 T 22-04-2016 PP4_RS05290 e0c2f6fd3add59de3cbfd3316d96d501 679 SUPERFAMILY SSF52374 175 386 2.82E-98 T 22-04-2016 PP4_RS05290 e0c2f6fd3add59de3cbfd3316d96d501 679 SUPERFAMILY SSF57770 141 175 2.75E-12 T 22-04-2016 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 PP4_RS05290 e0c2f6fd3add59de3cbfd3316d96d501 679 Gene3D G3DSA:1.10.730.10 379 534 6.6E-38 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS05290 e0c2f6fd3add59de3cbfd3316d96d501 679 Pfam PF01588 Putative tRNA binding domain 583 676 2.8E-22 T 22-04-2016 IPR002547 tRNA-binding domain GO:0000049 Reactome: REACT_71 PP4_RS05290 e0c2f6fd3add59de3cbfd3316d96d501 679 Pfam PF09334 tRNA synthetases class I (M) 7 395 8.5E-158 T 22-04-2016 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS05290 e0c2f6fd3add59de3cbfd3316d96d501 679 SUPERFAMILY SSF50249 573 678 2.06E-28 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS05290 e0c2f6fd3add59de3cbfd3316d96d501 679 PANTHER PTHR11946:SF86 1 634 7.8E-236 T 22-04-2016 PP4_RS05290 e0c2f6fd3add59de3cbfd3316d96d501 679 Hamap MF_00098 Methionine--tRNA ligase [metG]. 5 545 39.47 T 22-04-2016 IPR023458 Methionine-tRNA ligase, type 1 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 PP4_RS05290 e0c2f6fd3add59de3cbfd3316d96d501 679 Gene3D G3DSA:2.40.50.140 570 679 1.9E-38 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS05290 e0c2f6fd3add59de3cbfd3316d96d501 679 Gene3D G3DSA:2.20.28.20 144 175 3.3E-19 T 22-04-2016 IPR029038 Methionyl-tRNA synthetase, Zn-domain KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 PP4_RS05290 e0c2f6fd3add59de3cbfd3316d96d501 679 Gene3D G3DSA:3.40.50.620 182 378 3.6E-84 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS05290 e0c2f6fd3add59de3cbfd3316d96d501 679 Gene3D G3DSA:3.40.50.620 6 143 3.6E-84 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS14015 05134f16eb33c2374b1096af7dd146d6 725 SUPERFAMILY SSF69279 214 385 4.59E-29 T 22-04-2016 PP4_RS14015 05134f16eb33c2374b1096af7dd146d6 725 Gene3D G3DSA:2.40.50.230 390 471 1.6E-36 T 22-04-2016 IPR006531 Gp5 N-terminal PP4_RS14015 05134f16eb33c2374b1096af7dd146d6 725 SUPERFAMILY SSF69279 16 183 5.1E-50 T 22-04-2016 PP4_RS14015 05134f16eb33c2374b1096af7dd146d6 725 Gene3D G3DSA:3.55.50.10 97 184 5.7E-28 T 22-04-2016 PP4_RS14015 05134f16eb33c2374b1096af7dd146d6 725 PANTHER PTHR32305 656 671 1.2E-209 T 22-04-2016 PP4_RS14015 05134f16eb33c2374b1096af7dd146d6 725 PANTHER PTHR32305 5 625 1.2E-209 T 22-04-2016 PP4_RS14015 05134f16eb33c2374b1096af7dd146d6 725 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 21 523 2.6E-125 T 22-04-2016 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein PP4_RS14015 05134f16eb33c2374b1096af7dd146d6 725 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 12 541 8.5E-171 T 22-04-2016 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset PP4_RS14015 05134f16eb33c2374b1096af7dd146d6 725 SUPERFAMILY SSF69349 462 673 3.3E-50 T 22-04-2016 PP4_RS14015 05134f16eb33c2374b1096af7dd146d6 725 PANTHER PTHR32305:SF11 656 671 1.2E-209 T 22-04-2016 PP4_RS14015 05134f16eb33c2374b1096af7dd146d6 725 PANTHER PTHR32305:SF11 5 625 1.2E-209 T 22-04-2016 PP4_RS14015 05134f16eb33c2374b1096af7dd146d6 725 SUPERFAMILY SSF69255 384 471 1.52E-30 T 22-04-2016 PP4_RS14015 05134f16eb33c2374b1096af7dd146d6 725 Pfam PF05954 Phage late control gene D protein (GPD) 29 347 6.6E-67 T 22-04-2016 PP4_RS25240 b9ac6292a9fb35bb207081bcd7dfbc85 585 Pfam PF16861 Carbamoyltransferase C-terminus 406 575 4.6E-60 T 22-04-2016 IPR031730 Carbamoyltransferase, C-terminal PP4_RS25240 b9ac6292a9fb35bb207081bcd7dfbc85 585 PANTHER PTHR34847 4 578 1.2E-141 T 22-04-2016 PP4_RS25240 b9ac6292a9fb35bb207081bcd7dfbc85 585 SUPERFAMILY SSF53067 255 358 7.77E-13 T 22-04-2016 PP4_RS25240 b9ac6292a9fb35bb207081bcd7dfbc85 585 SUPERFAMILY SSF53067 22 84 7.77E-13 T 22-04-2016 PP4_RS25240 b9ac6292a9fb35bb207081bcd7dfbc85 585 SUPERFAMILY SSF53067 132 218 7.77E-13 T 22-04-2016 PP4_RS25240 b9ac6292a9fb35bb207081bcd7dfbc85 585 Pfam PF02543 Carbamoyltransferase N-terminus 5 354 8.9E-55 T 22-04-2016 IPR003696 Carbamoyltransferase GO:0003824|GO:0009058 PP4_RS08325 d98cf0896cc0c3bc1fece2e01884d252 904 SUPERFAMILY SSF54862 82 213 4.6E-33 T 22-04-2016 PP4_RS08325 d98cf0896cc0c3bc1fece2e01884d252 904 Gene3D G3DSA:2.20.25.90 227 275 4.2E-14 T 22-04-2016 PP4_RS08325 d98cf0896cc0c3bc1fece2e01884d252 904 SUPERFAMILY SSF54292 1 77 3.01E-18 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS08325 d98cf0896cc0c3bc1fece2e01884d252 904 Gene3D G3DSA:3.10.20.30 3 81 5.2E-7 T 22-04-2016 IPR012675 Beta-grasp domain PP4_RS08325 d98cf0896cc0c3bc1fece2e01884d252 904 Pfam PF00384 Molybdopterin oxidoreductase 571 634 6.7E-8 T 22-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 PP4_RS08325 d98cf0896cc0c3bc1fece2e01884d252 904 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 88 127 6.6E-15 T 22-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 PP4_RS08325 d98cf0896cc0c3bc1fece2e01884d252 904 SMART SM00929 88 128 2.6E-19 T 22-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 PP4_RS08325 d98cf0896cc0c3bc1fece2e01884d252 904 Gene3D G3DSA:3.30.70.20 198 226 5.4E-5 T 22-04-2016 PP4_RS08325 d98cf0896cc0c3bc1fece2e01884d252 904 Gene3D G3DSA:3.30.70.20 147 157 5.4E-5 T 22-04-2016 PP4_RS08325 d98cf0896cc0c3bc1fece2e01884d252 904 SMART SM00926 221 275 5.1E-11 T 22-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 PP4_RS08325 d98cf0896cc0c3bc1fece2e01884d252 904 ProSitePatterns PS00642 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 2. 103 115 - T 22-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 PP4_RS08325 d98cf0896cc0c3bc1fece2e01884d252 904 PANTHER PTHR11615:SF134 732 901 0.0 T 22-04-2016 PP4_RS08325 d98cf0896cc0c3bc1fece2e01884d252 904 PANTHER PTHR11615:SF134 492 685 0.0 T 22-04-2016 PP4_RS08325 d98cf0896cc0c3bc1fece2e01884d252 904 PANTHER PTHR11615:SF134 3 316 0.0 T 22-04-2016 PP4_RS08325 d98cf0896cc0c3bc1fece2e01884d252 904 PANTHER PTHR11615:SF134 360 426 0.0 T 22-04-2016 PP4_RS08325 d98cf0896cc0c3bc1fece2e01884d252 904 Gene3D G3DSA:3.40.50.740 291 336 4.9E-32 T 22-04-2016 PP4_RS08325 d98cf0896cc0c3bc1fece2e01884d252 904 Gene3D G3DSA:3.40.50.740 500 682 4.9E-32 T 22-04-2016 PP4_RS08325 d98cf0896cc0c3bc1fece2e01884d252 904 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 3 77 1.3E-10 T 22-04-2016 PP4_RS08325 d98cf0896cc0c3bc1fece2e01884d252 904 ProSitePatterns PS00643 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 3. 150 160 - T 22-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 PP4_RS08325 d98cf0896cc0c3bc1fece2e01884d252 904 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 221 274 8.1E-11 T 22-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 PP4_RS08325 d98cf0896cc0c3bc1fece2e01884d252 904 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 31 48 - T 22-04-2016 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 PP4_RS08325 d98cf0896cc0c3bc1fece2e01884d252 904 TIGRFAM TIGR01973 NuoG: NADH dehydrogenase (quinone), G subunit 4 651 1.9E-209 T 22-04-2016 IPR010228 NADH:ubiquinone oxidoreductase, subunit G GO:0016651|GO:0051536|GO:0055114 PP4_RS08325 d98cf0896cc0c3bc1fece2e01884d252 904 PANTHER PTHR11615 732 901 0.0 T 22-04-2016 PP4_RS08325 d98cf0896cc0c3bc1fece2e01884d252 904 PANTHER PTHR11615 492 685 0.0 T 22-04-2016 PP4_RS08325 d98cf0896cc0c3bc1fece2e01884d252 904 PANTHER PTHR11615 3 316 0.0 T 22-04-2016 PP4_RS08325 d98cf0896cc0c3bc1fece2e01884d252 904 PANTHER PTHR11615 360 426 0.0 T 22-04-2016 PP4_RS08325 d98cf0896cc0c3bc1fece2e01884d252 904 SUPERFAMILY SSF53706 219 685 1.8E-79 T 22-04-2016 PP4_RS09845 7359a9eb83e8aedfced313e50fb06601 302 Gene3D G3DSA:3.40.710.10 2 302 4.1E-120 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS09845 7359a9eb83e8aedfced313e50fb06601 302 Hamap MF_00313 Glutaminase [glsA]. 1 302 45.752 T 22-04-2016 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: REACT_13|Reactome: REACT_13685 PP4_RS09845 7359a9eb83e8aedfced313e50fb06601 302 SUPERFAMILY SSF56601 2 302 6.92E-109 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS09845 7359a9eb83e8aedfced313e50fb06601 302 PANTHER PTHR12544 4 302 5.5E-142 T 22-04-2016 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: REACT_13|Reactome: REACT_13685 PP4_RS09845 7359a9eb83e8aedfced313e50fb06601 302 TIGRFAM TIGR03814 Gln_ase: glutaminase A 5 302 3.9E-127 T 22-04-2016 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: REACT_13|Reactome: REACT_13685 PP4_RS09845 7359a9eb83e8aedfced313e50fb06601 302 Pfam PF04960 Glutaminase 19 302 9.0E-110 T 22-04-2016 IPR015868 Glutaminase GO:0004359|GO:0006541 KEGG: 00220+3.5.1.2|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|Reactome: REACT_13|Reactome: REACT_13685 PP4_RS10730 465a96066cf02c2031054e267aa79644 160 SMART SM00344 10 119 2.2E-39 T 22-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 PP4_RS10730 465a96066cf02c2031054e267aa79644 160 PANTHER PTHR30154 2 159 7.5E-53 T 22-04-2016 PP4_RS10730 465a96066cf02c2031054e267aa79644 160 SUPERFAMILY SSF46785 9 70 1.39E-15 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS10730 465a96066cf02c2031054e267aa79644 160 Pfam PF01037 Lrp/AsnC ligand binding domain 83 150 3.9E-20 T 22-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PP4_RS10730 465a96066cf02c2031054e267aa79644 160 PANTHER PTHR30154:SF28 2 159 7.5E-53 T 22-04-2016 PP4_RS10730 465a96066cf02c2031054e267aa79644 160 Gene3D G3DSA:3.30.70.920 63 147 7.5E-26 T 22-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PP4_RS10730 465a96066cf02c2031054e267aa79644 160 Gene3D G3DSA:1.10.10.10 11 61 2.0E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS10730 465a96066cf02c2031054e267aa79644 160 Pfam PF13412 Winged helix-turn-helix DNA-binding 10 57 4.1E-15 T 22-04-2016 PP4_RS10730 465a96066cf02c2031054e267aa79644 160 SUPERFAMILY SSF54909 70 158 2.01E-20 T 22-04-2016 IPR011008 Dimeric alpha-beta barrel PP4_RS10730 465a96066cf02c2031054e267aa79644 160 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 37 56 2.3E-10 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS10730 465a96066cf02c2031054e267aa79644 160 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 26 37 2.3E-10 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS10730 465a96066cf02c2031054e267aa79644 160 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 10 26 2.3E-10 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS00575 776b2ae671e4d022bf75571775e53359 210 Gene3D G3DSA:3.40.50.300 15 200 7.0E-39 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS00575 776b2ae671e4d022bf75571775e53359 210 PANTHER PTHR11649 13 206 3.2E-50 T 22-04-2016 PP4_RS00575 776b2ae671e4d022bf75571775e53359 210 SUPERFAMILY SSF52540 23 202 1.01E-33 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS00575 776b2ae671e4d022bf75571775e53359 210 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 14 198 6.9E-70 T 22-04-2016 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0000917|GO:0005525 PP4_RS00575 776b2ae671e4d022bf75571775e53359 210 Pfam PF01926 50S ribosome-binding GTPase 33 150 1.2E-18 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 PP4_RS00575 776b2ae671e4d022bf75571775e53359 210 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 19 202 26.172 T 22-04-2016 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0000917|GO:0005525 PP4_RS11025 f91cdc092df3873f30694aa7efb5dca4 603 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 470 588 4.6E-17 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS11025 f91cdc092df3873f30694aa7efb5dca4 603 Gene3D G3DSA:3.30.450.40 154 328 7.0E-21 T 22-04-2016 IPR029016 GAF domain-like PP4_RS11025 f91cdc092df3873f30694aa7efb5dca4 603 Gene3D G3DSA:3.30.565.10 413 588 3.9E-32 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS11025 f91cdc092df3873f30694aa7efb5dca4 603 Gene3D G3DSA:3.30.450.20 56 152 5.2E-4 T 22-04-2016 PP4_RS11025 f91cdc092df3873f30694aa7efb5dca4 603 PANTHER PTHR24423 191 289 2.0E-104 T 22-04-2016 PP4_RS11025 f91cdc092df3873f30694aa7efb5dca4 603 PANTHER PTHR24423 45 166 2.0E-104 T 22-04-2016 PP4_RS11025 f91cdc092df3873f30694aa7efb5dca4 603 PANTHER PTHR24423 345 598 2.0E-104 T 22-04-2016 PP4_RS11025 f91cdc092df3873f30694aa7efb5dca4 603 SUPERFAMILY SSF55781 156 322 8.94E-28 T 22-04-2016 IPR029016 GAF domain-like PP4_RS11025 f91cdc092df3873f30694aa7efb5dca4 603 SMART SM00387 468 589 8.5E-27 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS11025 f91cdc092df3873f30694aa7efb5dca4 603 SMART SM00388 361 427 1.1E-11 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS11025 f91cdc092df3873f30694aa7efb5dca4 603 PANTHER PTHR24423:SF438 191 289 2.0E-104 T 22-04-2016 PP4_RS11025 f91cdc092df3873f30694aa7efb5dca4 603 PANTHER PTHR24423:SF438 45 166 2.0E-104 T 22-04-2016 PP4_RS11025 f91cdc092df3873f30694aa7efb5dca4 603 PANTHER PTHR24423:SF438 345 598 2.0E-104 T 22-04-2016 PP4_RS11025 f91cdc092df3873f30694aa7efb5dca4 603 Pfam PF00512 His Kinase A (phospho-acceptor) domain 363 426 4.6E-10 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS11025 f91cdc092df3873f30694aa7efb5dca4 603 Pfam PF01590 GAF domain 175 308 6.1E-12 T 22-04-2016 IPR003018 GAF domain GO:0005515 PP4_RS11025 f91cdc092df3873f30694aa7efb5dca4 603 Gene3D G3DSA:1.10.287.130 354 412 4.2E-7 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS11025 f91cdc092df3873f30694aa7efb5dca4 603 SUPERFAMILY SSF47384 349 425 2.16E-11 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS11025 f91cdc092df3873f30694aa7efb5dca4 603 SUPERFAMILY SSF55874 417 587 7.99E-36 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS11025 f91cdc092df3873f30694aa7efb5dca4 603 SMART SM00065 173 322 2.8E-7 T 22-04-2016 IPR003018 GAF domain GO:0005515 PP4_RS11025 f91cdc092df3873f30694aa7efb5dca4 603 PRINTS PR00344 Bacterial sensor protein C-terminal signature 518 532 1.5E-17 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS11025 f91cdc092df3873f30694aa7efb5dca4 603 PRINTS PR00344 Bacterial sensor protein C-terminal signature 549 567 1.5E-17 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS11025 f91cdc092df3873f30694aa7efb5dca4 603 PRINTS PR00344 Bacterial sensor protein C-terminal signature 573 586 1.5E-17 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS11025 f91cdc092df3873f30694aa7efb5dca4 603 PRINTS PR00344 Bacterial sensor protein C-terminal signature 536 546 1.5E-17 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS17350 c7d3123a0c72f5e36f2bd781e2954e92 319 SUPERFAMILY SSF46689 268 318 4.93E-9 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS17350 c7d3123a0c72f5e36f2bd781e2954e92 319 Gene3D G3DSA:1.10.10.60 270 318 2.7E-12 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS17350 c7d3123a0c72f5e36f2bd781e2954e92 319 SMART SM00342 231 316 1.6E-20 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS17350 c7d3123a0c72f5e36f2bd781e2954e92 319 PANTHER PTHR11019 182 317 6.3E-17 T 22-04-2016 PP4_RS17350 c7d3123a0c72f5e36f2bd781e2954e92 319 Gene3D G3DSA:1.10.10.60 212 269 4.0E-7 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS17350 c7d3123a0c72f5e36f2bd781e2954e92 319 PANTHER PTHR11019:SF113 182 317 6.3E-17 T 22-04-2016 PP4_RS17350 c7d3123a0c72f5e36f2bd781e2954e92 319 Pfam PF12833 Helix-turn-helix domain 238 317 3.1E-22 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS17350 c7d3123a0c72f5e36f2bd781e2954e92 319 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 300 316 5.2E-6 T 22-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PP4_RS17350 c7d3123a0c72f5e36f2bd781e2954e92 319 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 285 300 5.2E-6 T 22-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PP4_RS17350 c7d3123a0c72f5e36f2bd781e2954e92 319 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 269 312 - T 22-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PP4_RS03520 8d5e228a3847d4281c026f0cf0578749 482 SUPERFAMILY SSF52799 389 477 1.05E-21 T 22-04-2016 IPR029021 Protein-tyrosine phosphatase-like PP4_RS03520 8d5e228a3847d4281c026f0cf0578749 482 SUPERFAMILY SSF52799 286 344 1.05E-21 T 22-04-2016 IPR029021 Protein-tyrosine phosphatase-like PP4_RS03520 8d5e228a3847d4281c026f0cf0578749 482 Pfam PF14378 PAP2 superfamily 73 198 6.4E-7 T 22-04-2016 IPR026841 Inositolphosphotransferase Aur1/Ipt1 PP4_RS03520 8d5e228a3847d4281c026f0cf0578749 482 PANTHER PTHR10159 370 477 2.5E-24 T 22-04-2016 IPR024950 Dual specificity phosphatase PP4_RS03520 8d5e228a3847d4281c026f0cf0578749 482 PANTHER PTHR10159 64 335 2.5E-24 T 22-04-2016 IPR024950 Dual specificity phosphatase PP4_RS03520 8d5e228a3847d4281c026f0cf0578749 482 SMART SM00195 304 481 0.0013 T 22-04-2016 IPR020422 Dual specificity protein phosphatase domain GO:0006470|GO:0008138 PP4_RS03520 8d5e228a3847d4281c026f0cf0578749 482 Gene3D G3DSA:3.90.190.10 385 478 2.2E-16 T 22-04-2016 IPR029021 Protein-tyrosine phosphatase-like PP4_RS03520 8d5e228a3847d4281c026f0cf0578749 482 Gene3D G3DSA:3.90.190.10 304 341 2.2E-16 T 22-04-2016 IPR029021 Protein-tyrosine phosphatase-like PP4_RS03520 8d5e228a3847d4281c026f0cf0578749 482 PANTHER PTHR10159:SF370 370 477 2.5E-24 T 22-04-2016 PP4_RS03520 8d5e228a3847d4281c026f0cf0578749 482 PANTHER PTHR10159:SF370 64 335 2.5E-24 T 22-04-2016 PP4_RS03520 8d5e228a3847d4281c026f0cf0578749 482 Pfam PF00782 Dual specificity phosphatase, catalytic domain 406 476 2.0E-7 T 22-04-2016 IPR000340 Dual specificity phosphatase, catalytic domain GO:0006470|GO:0008138 PP4_RS06780 5f01eb45d0db0cd229f9620f242fe2bc 118 Gene3D G3DSA:3.30.1360.20 12 112 1.1E-32 T 22-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 PP4_RS06780 5f01eb45d0db0cd229f9620f242fe2bc 118 PANTHER PTHR12599 3 113 5.5E-34 T 22-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 PP4_RS06780 5f01eb45d0db0cd229f9620f242fe2bc 118 SUPERFAMILY SSF55248 16 111 4.84E-34 T 22-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 PP4_RS06780 5f01eb45d0db0cd229f9620f242fe2bc 118 Pfam PF01329 Pterin 4 alpha carbinolamine dehydratase 18 109 1.9E-29 T 22-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 PP4_RS06780 5f01eb45d0db0cd229f9620f242fe2bc 118 Hamap MF_00434 Putative pterin-4-alpha-carbinolamine dehydratase. 16 111 22.268 T 22-04-2016 IPR001533 Transcriptional coactivator/pterin dehydratase GO:0006729|GO:0008124 MetaCyc: PWY-7158 PP4_RS12170 086989ec8960e4b5811845aa41a5dbe1 1042 PANTHER PTHR32063:SF10 1 1024 0.0 T 22-04-2016 PP4_RS12170 086989ec8960e4b5811845aa41a5dbe1 1042 Gene3D G3DSA:1.10.3850.10 811 1023 5.9E-55 T 22-04-2016 PP4_RS12170 086989ec8960e4b5811845aa41a5dbe1 1042 Gene3D G3DSA:1.10.3850.10 278 497 2.5E-60 T 22-04-2016 PP4_RS12170 086989ec8960e4b5811845aa41a5dbe1 1042 SUPERFAMILY SSF82714 719 804 1.05E-20 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS12170 086989ec8960e4b5811845aa41a5dbe1 1042 Gene3D G3DSA:3.30.2090.10 718 807 3.4E-23 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS12170 086989ec8960e4b5811845aa41a5dbe1 1042 Gene3D G3DSA:3.30.2090.10 180 274 4.4E-24 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS12170 086989ec8960e4b5811845aa41a5dbe1 1042 SUPERFAMILY SSF82866 803 1023 4.19E-41 T 22-04-2016 PP4_RS12170 086989ec8960e4b5811845aa41a5dbe1 1042 Gene3D G3DSA:3.30.70.1430 38 137 5.0E-29 T 22-04-2016 PP4_RS12170 086989ec8960e4b5811845aa41a5dbe1 1042 SUPERFAMILY SSF82693 273 329 1.92E-24 T 22-04-2016 PP4_RS12170 086989ec8960e4b5811845aa41a5dbe1 1042 SUPERFAMILY SSF82693 135 181 1.92E-24 T 22-04-2016 PP4_RS12170 086989ec8960e4b5811845aa41a5dbe1 1042 SUPERFAMILY SSF82693 565 668 8.89E-28 T 22-04-2016 PP4_RS12170 086989ec8960e4b5811845aa41a5dbe1 1042 SUPERFAMILY SSF82714 181 271 9.29E-21 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS12170 086989ec8960e4b5811845aa41a5dbe1 1042 SUPERFAMILY SSF82866 295 496 6.93E-50 T 22-04-2016 PP4_RS12170 086989ec8960e4b5811845aa41a5dbe1 1042 SUPERFAMILY SSF82693 38 131 8.37E-24 T 22-04-2016 PP4_RS12170 086989ec8960e4b5811845aa41a5dbe1 1042 Gene3D G3DSA:3.30.70.1430 567 668 1.8E-30 T 22-04-2016 PP4_RS12170 086989ec8960e4b5811845aa41a5dbe1 1042 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 1 1035 0.0 T 22-04-2016 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 PP4_RS12170 086989ec8960e4b5811845aa41a5dbe1 1042 PANTHER PTHR32063 1 1024 0.0 T 22-04-2016 PP4_RS12170 086989ec8960e4b5811845aa41a5dbe1 1042 PRINTS PR00702 Acriflavin resistance protein family signature 469 492 2.0E-102 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS12170 086989ec8960e4b5811845aa41a5dbe1 1042 PRINTS PR00702 Acriflavin resistance protein family signature 390 414 2.0E-102 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS12170 086989ec8960e4b5811845aa41a5dbe1 1042 PRINTS PR00702 Acriflavin resistance protein family signature 552 569 2.0E-102 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS12170 086989ec8960e4b5811845aa41a5dbe1 1042 PRINTS PR00702 Acriflavin resistance protein family signature 444 467 2.0E-102 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS12170 086989ec8960e4b5811845aa41a5dbe1 1042 PRINTS PR00702 Acriflavin resistance protein family signature 335 358 2.0E-102 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS12170 086989ec8960e4b5811845aa41a5dbe1 1042 PRINTS PR00702 Acriflavin resistance protein family signature 36 54 2.0E-102 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS12170 086989ec8960e4b5811845aa41a5dbe1 1042 PRINTS PR00702 Acriflavin resistance protein family signature 8 32 2.0E-102 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS12170 086989ec8960e4b5811845aa41a5dbe1 1042 PRINTS PR00702 Acriflavin resistance protein family signature 619 633 2.0E-102 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS12170 086989ec8960e4b5811845aa41a5dbe1 1042 PRINTS PR00702 Acriflavin resistance protein family signature 362 383 2.0E-102 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS12170 086989ec8960e4b5811845aa41a5dbe1 1042 Pfam PF00873 AcrB/AcrD/AcrF family 1 1021 0.0 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS26835 e9cddbb176dac67e41f2ef046528505b 462 TIGRFAM TIGR00797 matE: MATE efflux family protein 18 423 2.7E-68 T 22-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 PP4_RS26835 e9cddbb176dac67e41f2ef046528505b 462 Pfam PF01554 MatE 18 176 7.4E-26 T 22-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 PP4_RS26835 e9cddbb176dac67e41f2ef046528505b 462 Pfam PF01554 MatE 244 410 5.2E-26 T 22-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 PP4_RS26835 e9cddbb176dac67e41f2ef046528505b 462 PIRSF PIRSF006603 7 455 4.3E-59 T 22-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 PP4_RS26835 e9cddbb176dac67e41f2ef046528505b 462 PANTHER PTHR11206 8 457 5.1E-86 T 22-04-2016 PP4_RS13615 5ab6d46254089923e4d3f6e650c6aab4 362 Gene3D G3DSA:3.60.15.10 18 129 2.2E-54 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS13615 5ab6d46254089923e4d3f6e650c6aab4 362 Gene3D G3DSA:3.60.15.10 168 292 2.2E-54 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS13615 5ab6d46254089923e4d3f6e650c6aab4 362 PANTHER PTHR11935 1 270 1.6E-46 T 22-04-2016 PP4_RS13615 5ab6d46254089923e4d3f6e650c6aab4 362 Pfam PF00753 Metallo-beta-lactamase superfamily 45 263 2.7E-26 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS13615 5ab6d46254089923e4d3f6e650c6aab4 362 SMART SM00849 48 263 6.8E-26 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS13615 5ab6d46254089923e4d3f6e650c6aab4 362 PANTHER PTHR11935:SF109 1 270 1.6E-46 T 22-04-2016 PP4_RS13615 5ab6d46254089923e4d3f6e650c6aab4 362 SUPERFAMILY SSF56281 7 350 7.08E-71 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS19850 3c996913e3d630a996b01415d733dbe8 266 Gene3D G3DSA:1.10.760.10 167 264 6.8E-16 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS19850 3c996913e3d630a996b01415d733dbe8 266 Pfam PF00034 Cytochrome c 178 260 8.3E-13 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS19850 3c996913e3d630a996b01415d733dbe8 266 SUPERFAMILY SSF46626 155 265 3.65E-19 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS26250 b820ccb1e01b8585103368fb4847dc65 759 PANTHER PTHR22931:SF23 200 723 5.2E-277 T 22-04-2016 PP4_RS26250 b820ccb1e01b8585103368fb4847dc65 759 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 427 714 1.3E-98 T 22-04-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 PP4_RS26250 b820ccb1e01b8585103368fb4847dc65 759 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 620 635 8.5E-24 T 22-04-2016 PP4_RS26250 b820ccb1e01b8585103368fb4847dc65 759 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 467 486 8.5E-24 T 22-04-2016 PP4_RS26250 b820ccb1e01b8585103368fb4847dc65 759 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 637 652 8.5E-24 T 22-04-2016 PP4_RS26250 b820ccb1e01b8585103368fb4847dc65 759 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 673 685 8.5E-24 T 22-04-2016 PP4_RS26250 b820ccb1e01b8585103368fb4847dc65 759 Pfam PF00391 PEP-utilising enzyme, mobile domain 328 399 1.8E-16 T 22-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 PP4_RS26250 b820ccb1e01b8585103368fb4847dc65 759 Gene3D G3DSA:3.20.20.60 431 740 1.4E-104 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PP4_RS26250 b820ccb1e01b8585103368fb4847dc65 759 Pfam PF13185 GAF domain 16 154 1.2E-14 T 22-04-2016 IPR003018 GAF domain GO:0005515 PP4_RS26250 b820ccb1e01b8585103368fb4847dc65 759 SUPERFAMILY SSF51621 428 715 5.5E-103 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PP4_RS26250 b820ccb1e01b8585103368fb4847dc65 759 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 179 736 7.7E-138 T 22-04-2016 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 PP4_RS26250 b820ccb1e01b8585103368fb4847dc65 759 SUPERFAMILY SSF52009 300 420 3.79E-28 T 22-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 PP4_RS26250 b820ccb1e01b8585103368fb4847dc65 759 Pfam PF05524 PEP-utilising enzyme, N-terminal 180 301 9.7E-27 T 22-04-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 PP4_RS26250 b820ccb1e01b8585103368fb4847dc65 759 Gene3D G3DSA:3.30.450.40 1 162 1.3E-48 T 22-04-2016 IPR029016 GAF domain-like PP4_RS26250 b820ccb1e01b8585103368fb4847dc65 759 PANTHER PTHR22931 200 723 5.2E-277 T 22-04-2016 PP4_RS26250 b820ccb1e01b8585103368fb4847dc65 759 Gene3D G3DSA:3.50.30.10 308 430 1.8E-31 T 22-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 PP4_RS26250 b820ccb1e01b8585103368fb4847dc65 759 SUPERFAMILY SSF47831 204 316 3.4E-30 T 22-04-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 PP4_RS26250 b820ccb1e01b8585103368fb4847dc65 759 SMART SM00065 17 164 3.5E-24 T 22-04-2016 IPR003018 GAF domain GO:0005515 PP4_RS26250 b820ccb1e01b8585103368fb4847dc65 759 Gene3D G3DSA:1.10.274.10 204 307 1.6E-34 T 22-04-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 PP4_RS26250 b820ccb1e01b8585103368fb4847dc65 759 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 620 638 - T 22-04-2016 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 PP4_RS26250 b820ccb1e01b8585103368fb4847dc65 759 SUPERFAMILY SSF55781 2 158 1.26E-32 T 22-04-2016 IPR029016 GAF domain-like PP4_RS20385 91859dfd7066911c2bae0f4f9e816a20 429 Pfam PF02127 Aminopeptidase I zinc metalloprotease (M18) 12 423 2.7E-137 T 22-04-2016 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 PP4_RS20385 91859dfd7066911c2bae0f4f9e816a20 429 Gene3D G3DSA:3.40.630.10 4 86 1.1E-121 T 22-04-2016 PP4_RS20385 91859dfd7066911c2bae0f4f9e816a20 429 Gene3D G3DSA:3.40.630.10 223 425 1.1E-121 T 22-04-2016 PP4_RS20385 91859dfd7066911c2bae0f4f9e816a20 429 PANTHER PTHR28570 1 425 1.5E-193 T 22-04-2016 PP4_RS20385 91859dfd7066911c2bae0f4f9e816a20 429 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 76 92 6.8E-42 T 22-04-2016 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 PP4_RS20385 91859dfd7066911c2bae0f4f9e816a20 429 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 144 161 6.8E-42 T 22-04-2016 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 PP4_RS20385 91859dfd7066911c2bae0f4f9e816a20 429 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 390 405 6.8E-42 T 22-04-2016 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 PP4_RS20385 91859dfd7066911c2bae0f4f9e816a20 429 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 109 129 6.8E-42 T 22-04-2016 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 PP4_RS20385 91859dfd7066911c2bae0f4f9e816a20 429 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 301 317 6.8E-42 T 22-04-2016 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 PP4_RS20385 91859dfd7066911c2bae0f4f9e816a20 429 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 262 280 6.8E-42 T 22-04-2016 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 PP4_RS20385 91859dfd7066911c2bae0f4f9e816a20 429 Hamap MF_00467 Probable M18 family aminopeptidase 2 [apeB]. 1 425 55.548 T 22-04-2016 IPR022984 M18 family aminopeptidase 2, putative GO:0004177 PP4_RS20385 91859dfd7066911c2bae0f4f9e816a20 429 SUPERFAMILY SSF53187 4 87 1.82E-107 T 22-04-2016 PP4_RS20385 91859dfd7066911c2bae0f4f9e816a20 429 SUPERFAMILY SSF53187 214 424 1.82E-107 T 22-04-2016 PP4_RS20385 91859dfd7066911c2bae0f4f9e816a20 429 SUPERFAMILY SSF101821 88 213 2.47E-32 T 22-04-2016 PP4_RS20385 91859dfd7066911c2bae0f4f9e816a20 429 Gene3D G3DSA:2.30.250.10 87 220 2.6E-45 T 22-04-2016 IPR023358 Peptidase M18, domain 2 GO:0004177 PP4_RS05415 d1625577f75741d3f02c4a1b23c6586b 154 Pfam PF05425 Copper resistance protein D 48 149 5.4E-17 T 22-04-2016 IPR008457 Copper resistance protein D GO:0016021 PP4_RS02475 84fc305bc4cec96203f2555441f7a87e 1399 PANTHER PTHR19376:SF32 1177 1262 0.0 T 22-04-2016 PP4_RS02475 84fc305bc4cec96203f2555441f7a87e 1399 Pfam PF00623 RNA polymerase Rpb1, domain 2 344 385 1.2E-7 T 22-04-2016 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PP4_RS02475 84fc305bc4cec96203f2555441f7a87e 1399 Pfam PF00623 RNA polymerase Rpb1, domain 2 389 485 3.7E-28 T 22-04-2016 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PP4_RS02475 84fc305bc4cec96203f2555441f7a87e 1399 Pfam PF04998 RNA polymerase Rpb1, domain 5 766 1316 8.4E-79 T 22-04-2016 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PP4_RS02475 84fc305bc4cec96203f2555441f7a87e 1399 SUPERFAMILY SSF64484 1133 1363 0.0 T 22-04-2016 PP4_RS02475 84fc305bc4cec96203f2555441f7a87e 1399 SUPERFAMILY SSF64484 15 944 0.0 T 22-04-2016 PP4_RS02475 84fc305bc4cec96203f2555441f7a87e 1399 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 19 1366 0.0 T 22-04-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PP4_RS02475 84fc305bc4cec96203f2555441f7a87e 1399 Pfam PF04983 RNA polymerase Rpb1, domain 3 489 643 1.8E-29 T 22-04-2016 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PP4_RS02475 84fc305bc4cec96203f2555441f7a87e 1399 PANTHER PTHR19376 1303 1387 0.0 T 22-04-2016 PP4_RS02475 84fc305bc4cec96203f2555441f7a87e 1399 Gene3D G3DSA:2.40.50.100 1156 1211 1.9E-5 T 22-04-2016 PP4_RS02475 84fc305bc4cec96203f2555441f7a87e 1399 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 15 1376 10.485 T 22-04-2016 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PP4_RS02475 84fc305bc4cec96203f2555441f7a87e 1399 PANTHER PTHR19376:SF32 570 1157 0.0 T 22-04-2016 PP4_RS02475 84fc305bc4cec96203f2555441f7a87e 1399 PANTHER PTHR19376:SF32 1303 1387 0.0 T 22-04-2016 PP4_RS02475 84fc305bc4cec96203f2555441f7a87e 1399 PANTHER PTHR19376:SF32 4 551 0.0 T 22-04-2016 PP4_RS02475 84fc305bc4cec96203f2555441f7a87e 1399 Gene3D G3DSA:2.40.40.20 417 489 3.2E-37 T 22-04-2016 PP4_RS02475 84fc305bc4cec96203f2555441f7a87e 1399 Gene3D G3DSA:2.40.40.20 349 376 3.2E-37 T 22-04-2016 PP4_RS02475 84fc305bc4cec96203f2555441f7a87e 1399 Pfam PF05000 RNA polymerase Rpb1, domain 4 674 763 5.4E-20 T 22-04-2016 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PP4_RS02475 84fc305bc4cec96203f2555441f7a87e 1399 PANTHER PTHR19376 570 1157 0.0 T 22-04-2016 PP4_RS02475 84fc305bc4cec96203f2555441f7a87e 1399 PANTHER PTHR19376 1177 1262 0.0 T 22-04-2016 PP4_RS02475 84fc305bc4cec96203f2555441f7a87e 1399 PANTHER PTHR19376 4 551 0.0 T 22-04-2016 PP4_RS02475 84fc305bc4cec96203f2555441f7a87e 1399 SMART SM00663 235 514 4.7E-185 T 22-04-2016 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PP4_RS02475 84fc305bc4cec96203f2555441f7a87e 1399 Pfam PF04997 RNA polymerase Rpb1, domain 1 16 342 3.5E-88 T 22-04-2016 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PP4_RS23765 629201d98c008a72b2d8990014f49a77 557 TIGRFAM TIGR00634 recN: DNA repair protein RecN 1 552 1.9E-161 T 22-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 PP4_RS23765 629201d98c008a72b2d8990014f49a77 557 Gene3D G3DSA:3.40.50.300 420 506 1.4E-6 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23765 629201d98c008a72b2d8990014f49a77 557 PIRSF PIRSF003128 1 556 4.7E-160 T 22-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 PP4_RS23765 629201d98c008a72b2d8990014f49a77 557 Pfam PF02463 RecF/RecN/SMC N terminal domain 6 512 5.8E-15 T 22-04-2016 IPR003395 RecF/RecN/SMC, N-terminal PP4_RS23765 629201d98c008a72b2d8990014f49a77 557 Gene3D G3DSA:3.40.50.300 1 204 1.8E-67 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23765 629201d98c008a72b2d8990014f49a77 557 SUPERFAMILY SSF52540 341 507 1.71E-28 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23765 629201d98c008a72b2d8990014f49a77 557 SUPERFAMILY SSF52540 2 50 1.71E-28 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23765 629201d98c008a72b2d8990014f49a77 557 PANTHER PTHR11059 2 552 4.8E-169 T 22-04-2016 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 PP4_RS23765 629201d98c008a72b2d8990014f49a77 557 SUPERFAMILY SSF52540 1 217 7.45E-65 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS00165 6ac557e66d69bee89f7f2e5f9376572b 1053 SUPERFAMILY SSF82693 42 127 1.07E-21 T 22-04-2016 PP4_RS00165 6ac557e66d69bee89f7f2e5f9376572b 1053 SUPERFAMILY SSF82866 817 1042 1.09E-57 T 22-04-2016 PP4_RS00165 6ac557e66d69bee89f7f2e5f9376572b 1053 Gene3D G3DSA:3.30.70.1430 42 142 1.2E-28 T 22-04-2016 PP4_RS00165 6ac557e66d69bee89f7f2e5f9376572b 1053 PANTHER PTHR32063 2 1050 0.0 T 22-04-2016 PP4_RS00165 6ac557e66d69bee89f7f2e5f9376572b 1053 SUPERFAMILY SSF82693 155 191 9.42E-19 T 22-04-2016 PP4_RS00165 6ac557e66d69bee89f7f2e5f9376572b 1053 Gene3D G3DSA:1.10.3850.10 283 508 4.2E-52 T 22-04-2016 PP4_RS00165 6ac557e66d69bee89f7f2e5f9376572b 1053 Gene3D G3DSA:1.10.3850.10 825 1042 3.1E-59 T 22-04-2016 PP4_RS00165 6ac557e66d69bee89f7f2e5f9376572b 1053 SUPERFAMILY SSF82693 569 667 1.36E-7 T 22-04-2016 PP4_RS00165 6ac557e66d69bee89f7f2e5f9376572b 1053 SUPERFAMILY SSF82866 299 506 9.68E-35 T 22-04-2016 PP4_RS00165 6ac557e66d69bee89f7f2e5f9376572b 1053 SUPERFAMILY SSF82714 726 819 4.32E-15 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS00165 6ac557e66d69bee89f7f2e5f9376572b 1053 PRINTS PR00702 Acriflavin resistance protein family signature 339 362 7.4E-26 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS00165 6ac557e66d69bee89f7f2e5f9376572b 1053 PRINTS PR00702 Acriflavin resistance protein family signature 366 387 7.4E-26 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS00165 6ac557e66d69bee89f7f2e5f9376572b 1053 PRINTS PR00702 Acriflavin resistance protein family signature 553 570 7.4E-26 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS00165 6ac557e66d69bee89f7f2e5f9376572b 1053 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 7.4E-26 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS00165 6ac557e66d69bee89f7f2e5f9376572b 1053 PRINTS PR00702 Acriflavin resistance protein family signature 624 638 7.4E-26 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS00165 6ac557e66d69bee89f7f2e5f9376572b 1053 PRINTS PR00702 Acriflavin resistance protein family signature 480 503 7.4E-26 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS00165 6ac557e66d69bee89f7f2e5f9376572b 1053 PRINTS PR00702 Acriflavin resistance protein family signature 12 36 7.4E-26 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS00165 6ac557e66d69bee89f7f2e5f9376572b 1053 Gene3D G3DSA:3.30.2090.10 726 819 6.3E-17 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS00165 6ac557e66d69bee89f7f2e5f9376572b 1053 Gene3D G3DSA:3.30.2090.10 192 275 3.1E-19 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS00165 6ac557e66d69bee89f7f2e5f9376572b 1053 SUPERFAMILY SSF82714 192 274 6.02E-18 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS00165 6ac557e66d69bee89f7f2e5f9376572b 1053 TIGRFAM TIGR00914 2A0601: heavy metal efflux pump, CzcA family 1 1048 0.0 T 22-04-2016 IPR004763 Cation efflux system CzcA/CusA/SilA/NccA/HelA/CnrA GO:0006812|GO:0008324|GO:0016021 PP4_RS00165 6ac557e66d69bee89f7f2e5f9376572b 1053 Gene3D G3DSA:3.30.70.1430 569 664 7.9E-7 T 22-04-2016 PP4_RS00165 6ac557e66d69bee89f7f2e5f9376572b 1053 Pfam PF00873 AcrB/AcrD/AcrF family 5 1038 0.0 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS00165 6ac557e66d69bee89f7f2e5f9376572b 1053 PANTHER PTHR32063:SF24 2 1050 0.0 T 22-04-2016 PP4_RS00165 6ac557e66d69bee89f7f2e5f9376572b 1053 SUPERFAMILY SSF82693 277 333 9.42E-19 T 22-04-2016 PP4_RS25365 50642408346932210f07b60d867300e9 396 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 260 268 - T 22-04-2016 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 PP4_RS25365 50642408346932210f07b60d867300e9 396 SUPERFAMILY SSF55973 234 395 1.14E-66 T 22-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 PP4_RS25365 50642408346932210f07b60d867300e9 396 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 117 127 - T 22-04-2016 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 PP4_RS25365 50642408346932210f07b60d867300e9 396 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 234 365 3.0E-66 T 22-04-2016 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 PP4_RS25365 50642408346932210f07b60d867300e9 396 PIRSF PIRSF000497 1 395 4.7E-168 T 22-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 PP4_RS25365 50642408346932210f07b60d867300e9 396 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 3 394 55.986 T 22-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 PP4_RS25365 50642408346932210f07b60d867300e9 396 Pfam PF02772 S-adenosylmethionine synthetase, central domain 115 232 1.2E-42 T 22-04-2016 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 PP4_RS25365 50642408346932210f07b60d867300e9 396 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 6 393 4.6E-182 T 22-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 PP4_RS25365 50642408346932210f07b60d867300e9 396 Gene3D G3DSA:3.30.300.10 245 394 6.5E-69 T 22-04-2016 PP4_RS25365 50642408346932210f07b60d867300e9 396 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 6 101 2.0E-40 T 22-04-2016 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 PP4_RS25365 50642408346932210f07b60d867300e9 396 PANTHER PTHR11964 6 389 1.7E-256 T 22-04-2016 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 PP4_RS25365 50642408346932210f07b60d867300e9 396 Gene3D G3DSA:3.30.300.10 135 234 1.3E-40 T 22-04-2016 PP4_RS25365 50642408346932210f07b60d867300e9 396 SUPERFAMILY SSF55973 112 233 1.96E-49 T 22-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 PP4_RS25365 50642408346932210f07b60d867300e9 396 Gene3D G3DSA:3.30.300.10 12 134 3.1E-46 T 22-04-2016 PP4_RS25365 50642408346932210f07b60d867300e9 396 SUPERFAMILY SSF55973 6 111 3.1E-45 T 22-04-2016 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: REACT_13433|UniPathway: UPA00315 PP4_RS12825 7243738fcd9e753bb280509d779ffaa2 317 Gene3D G3DSA:1.10.3720.10 93 277 8.2E-41 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS12825 7243738fcd9e753bb280509d779ffaa2 317 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 283 2.1E-25 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS12825 7243738fcd9e753bb280509d779ffaa2 317 PANTHER PTHR30177 13 297 3.9E-122 T 22-04-2016 PP4_RS12825 7243738fcd9e753bb280509d779ffaa2 317 PANTHER PTHR30177:SF2 13 297 3.9E-122 T 22-04-2016 PP4_RS12825 7243738fcd9e753bb280509d779ffaa2 317 SUPERFAMILY SSF161098 94 277 4.97E-41 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS22610 9faeedce38c7c3b8ab98ee1e071312b4 950 Pfam PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 5 140 1.3E-27 T 22-04-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PP4_RS22610 9faeedce38c7c3b8ab98ee1e071312b4 950 PRINTS PR00107 Phosphocarrier protein signature 294 310 7.9E-7 T 22-04-2016 IPR000032 Phosphocarrier HPr protein-like PP4_RS22610 9faeedce38c7c3b8ab98ee1e071312b4 950 PRINTS PR00107 Phosphocarrier protein signature 337 354 7.9E-7 T 22-04-2016 IPR000032 Phosphocarrier HPr protein-like PP4_RS22610 9faeedce38c7c3b8ab98ee1e071312b4 950 PRINTS PR00107 Phosphocarrier protein signature 322 337 7.9E-7 T 22-04-2016 IPR000032 Phosphocarrier HPr protein-like PP4_RS22610 9faeedce38c7c3b8ab98ee1e071312b4 950 Gene3D G3DSA:3.40.930.10 148 276 1.1E-11 T 22-04-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PP4_RS22610 9faeedce38c7c3b8ab98ee1e071312b4 950 SUPERFAMILY SSF55804 5 141 1.18E-35 T 22-04-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: REACT_15518 PP4_RS22610 9faeedce38c7c3b8ab98ee1e071312b4 950 SUPERFAMILY SSF55804 148 275 1.7E-16 T 22-04-2016 IPR016152 Phosphotransferase/anion transporter GO:0005215|GO:0006810 Reactome: REACT_15518 PP4_RS22610 9faeedce38c7c3b8ab98ee1e071312b4 950 SUPERFAMILY SSF51621 645 931 1.1E-98 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PP4_RS22610 9faeedce38c7c3b8ab98ee1e071312b4 950 SUPERFAMILY SSF47831 426 533 2.48E-25 T 22-04-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 PP4_RS22610 9faeedce38c7c3b8ab98ee1e071312b4 950 Gene3D G3DSA:3.50.30.10 524 638 6.3E-35 T 22-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 PP4_RS22610 9faeedce38c7c3b8ab98ee1e071312b4 950 Gene3D G3DSA:3.20.20.60 648 949 3.3E-103 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PP4_RS22610 9faeedce38c7c3b8ab98ee1e071312b4 950 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 829 847 - T 22-04-2016 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 PP4_RS22610 9faeedce38c7c3b8ab98ee1e071312b4 950 Gene3D G3DSA:1.10.274.10 426 523 6.7E-28 T 22-04-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 PP4_RS22610 9faeedce38c7c3b8ab98ee1e071312b4 950 Pfam PF00391 PEP-utilising enzyme, mobile domain 541 613 8.1E-22 T 22-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 PP4_RS22610 9faeedce38c7c3b8ab98ee1e071312b4 950 Pfam PF05524 PEP-utilising enzyme, N-terminal 401 516 1.8E-22 T 22-04-2016 IPR008731 Phosphotransferase system, enzyme I N-terminal GO:0009401 PP4_RS22610 9faeedce38c7c3b8ab98ee1e071312b4 950 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 647 923 4.8E-105 T 22-04-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 PP4_RS22610 9faeedce38c7c3b8ab98ee1e071312b4 950 SUPERFAMILY SSF55594 285 372 2.62E-17 T 22-04-2016 IPR000032 Phosphocarrier HPr protein-like PP4_RS22610 9faeedce38c7c3b8ab98ee1e071312b4 950 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 572 583 - T 22-04-2016 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 PP4_RS22610 9faeedce38c7c3b8ab98ee1e071312b4 950 Gene3D G3DSA:3.40.930.10 4 141 4.6E-36 T 22-04-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PP4_RS22610 9faeedce38c7c3b8ab98ee1e071312b4 950 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 846 861 3.2E-18 T 22-04-2016 PP4_RS22610 9faeedce38c7c3b8ab98ee1e071312b4 950 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 829 844 3.2E-18 T 22-04-2016 PP4_RS22610 9faeedce38c7c3b8ab98ee1e071312b4 950 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 882 894 3.2E-18 T 22-04-2016 PP4_RS22610 9faeedce38c7c3b8ab98ee1e071312b4 950 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 681 700 3.2E-18 T 22-04-2016 PP4_RS22610 9faeedce38c7c3b8ab98ee1e071312b4 950 TIGRFAM TIGR01417 PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase 401 948 4.2E-146 T 22-04-2016 IPR006318 Phosphotransferase system, enzyme I-like GO:0016772 PP4_RS22610 9faeedce38c7c3b8ab98ee1e071312b4 950 PANTHER PTHR22931:SF15 433 932 1.7E-228 T 22-04-2016 PP4_RS22610 9faeedce38c7c3b8ab98ee1e071312b4 950 PANTHER PTHR22931 433 932 1.7E-228 T 22-04-2016 PP4_RS22610 9faeedce38c7c3b8ab98ee1e071312b4 950 SUPERFAMILY SSF52009 515 626 7.46E-32 T 22-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 PP4_RS22610 9faeedce38c7c3b8ab98ee1e071312b4 950 Pfam PF00381 PTS HPr component phosphorylation site 285 366 6.5E-16 T 22-04-2016 IPR000032 Phosphocarrier HPr protein-like PP4_RS22610 9faeedce38c7c3b8ab98ee1e071312b4 950 ProSitePatterns PS00372 PTS EIIA domains phosphorylation site signature 2. 47 63 - T 22-04-2016 IPR002178 PTS EIIA type-2 domain KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.- PP4_RS22610 9faeedce38c7c3b8ab98ee1e071312b4 950 Gene3D G3DSA:3.30.1340.10 284 372 5.7E-20 T 22-04-2016 IPR000032 Phosphocarrier HPr protein-like PP4_RS13705 b1d9af84035f2699edf5cbb8aa43f9d4 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 2.1E-38 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13705 b1d9af84035f2699edf5cbb8aa43f9d4 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 2.1E-38 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13705 b1d9af84035f2699edf5cbb8aa43f9d4 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 2.1E-38 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13705 b1d9af84035f2699edf5cbb8aa43f9d4 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 130 146 2.1E-38 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13705 b1d9af84035f2699edf5cbb8aa43f9d4 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 156 175 2.1E-38 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13705 b1d9af84035f2699edf5cbb8aa43f9d4 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 13 30 2.1E-38 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13705 b1d9af84035f2699edf5cbb8aa43f9d4 261 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 143 171 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PP4_RS13705 b1d9af84035f2699edf5cbb8aa43f9d4 261 SUPERFAMILY SSF51735 10 246 8.48E-68 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS13705 b1d9af84035f2699edf5cbb8aa43f9d4 261 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 20 246 1.8E-52 T 22-04-2016 PP4_RS13705 b1d9af84035f2699edf5cbb8aa43f9d4 261 PANTHER PTHR24322 16 140 4.0E-41 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13705 b1d9af84035f2699edf5cbb8aa43f9d4 261 PANTHER PTHR24322 156 186 4.0E-41 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13705 b1d9af84035f2699edf5cbb8aa43f9d4 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 136 144 5.3E-10 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13705 b1d9af84035f2699edf5cbb8aa43f9d4 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 5.3E-10 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13705 b1d9af84035f2699edf5cbb8aa43f9d4 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 156 175 5.3E-10 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13705 b1d9af84035f2699edf5cbb8aa43f9d4 261 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 12 206 4.1E-4 T 22-04-2016 PP4_RS13705 b1d9af84035f2699edf5cbb8aa43f9d4 261 Gene3D G3DSA:3.40.50.720 9 246 1.8E-70 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS23710 873c3322085bda2d9a1db31d3e247adc 634 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 99 596 5.8E-237 T 22-04-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 PP4_RS23710 873c3322085bda2d9a1db31d3e247adc 634 ProSitePatterns PS00674 AAA-protein family signature. 293 311 - T 22-04-2016 IPR003960 ATPase, AAA-type, conserved site GO:0005524 PP4_RS23710 873c3322085bda2d9a1db31d3e247adc 634 Pfam PF06480 FtsH Extracellular 5 90 6.7E-12 T 22-04-2016 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 PP4_RS23710 873c3322085bda2d9a1db31d3e247adc 634 SUPERFAMILY SSF52540 145 393 4.59E-72 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23710 873c3322085bda2d9a1db31d3e247adc 634 Gene3D G3DSA:3.40.50.300 149 333 1.2E-64 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23710 873c3322085bda2d9a1db31d3e247adc 634 Pfam PF01434 Peptidase family M41 384 595 6.5E-81 T 22-04-2016 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 PP4_RS23710 873c3322085bda2d9a1db31d3e247adc 634 SMART SM00382 186 325 2.7E-26 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS23710 873c3322085bda2d9a1db31d3e247adc 634 PANTHER PTHR23076 1 627 0.0 T 22-04-2016 PP4_RS23710 873c3322085bda2d9a1db31d3e247adc 634 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 190 322 3.5E-46 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 PP4_RS23710 873c3322085bda2d9a1db31d3e247adc 634 SUPERFAMILY SSF140990 404 606 3.01E-76 T 22-04-2016 PP4_RS23710 873c3322085bda2d9a1db31d3e247adc 634 Gene3D G3DSA:1.10.8.60 334 407 3.1E-27 T 22-04-2016 PP4_RS23710 873c3322085bda2d9a1db31d3e247adc 634 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 3 611 37.422 T 22-04-2016 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 PP4_RS18385 309711de1886e505080bfdbbe8f94be0 344 PANTHER PTHR30582:SF2 44 245 8.4E-54 T 22-04-2016 PP4_RS18385 309711de1886e505080bfdbbe8f94be0 344 PANTHER PTHR30582 44 245 8.4E-54 T 22-04-2016 PP4_RS18385 309711de1886e505080bfdbbe8f94be0 344 Gene3D G3DSA:2.40.440.10 52 162 1.3E-18 T 22-04-2016 PP4_RS18385 309711de1886e505080bfdbbe8f94be0 344 Pfam PF03734 L,D-transpeptidase catalytic domain 55 162 1.6E-19 T 22-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 PP4_RS18385 309711de1886e505080bfdbbe8f94be0 344 SUPERFAMILY SSF141523 51 162 6.41E-29 T 22-04-2016 PP4_RS06310 cff8edec8760398349a003f6f4c7491d 311 PANTHER PTHR12366 18 249 1.9E-115 T 22-04-2016 PP4_RS06310 cff8edec8760398349a003f6f4c7491d 311 Gene3D G3DSA:2.60.120.330 131 228 5.9E-16 T 22-04-2016 IPR027443 Isopenicillin N synthase-like PP4_RS06310 cff8edec8760398349a003f6f4c7491d 311 PANTHER PTHR12366:SF25 18 249 1.9E-115 T 22-04-2016 PP4_RS06310 cff8edec8760398349a003f6f4c7491d 311 SUPERFAMILY SSF51197 102 237 7.14E-17 T 22-04-2016 PP4_RS06310 cff8edec8760398349a003f6f4c7491d 311 Pfam PF05118 Aspartyl/Asparaginyl beta-hydroxylase 75 228 1.6E-47 T 22-04-2016 IPR007803 Aspartyl/asparaginy/proline hydroxylase GO:0018193 PP4_RS22100 1bd7395a0132e54a4aecd1d8d8288f4f 536 Gene3D G3DSA:3.90.76.10 39 219 3.6E-45 T 22-04-2016 PP4_RS22100 1bd7395a0132e54a4aecd1d8d8288f4f 536 SUPERFAMILY SSF53850 31 534 1.94E-139 T 22-04-2016 PP4_RS22100 1bd7395a0132e54a4aecd1d8d8288f4f 536 PANTHER PTHR30290:SF14 1 536 1.7E-187 T 22-04-2016 PP4_RS22100 1bd7395a0132e54a4aecd1d8d8288f4f 536 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 74 453 2.6E-94 T 22-04-2016 IPR000914 Solute-binding protein family 5 domain PP4_RS22100 1bd7395a0132e54a4aecd1d8d8288f4f 536 PANTHER PTHR30290 1 536 1.7E-187 T 22-04-2016 PP4_RS22100 1bd7395a0132e54a4aecd1d8d8288f4f 536 Gene3D G3DSA:3.10.105.10 291 507 1.5E-58 T 22-04-2016 PP4_RS22100 1bd7395a0132e54a4aecd1d8d8288f4f 536 PIRSF PIRSF002741 23 535 6.5E-105 T 22-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 PP4_RS18875 ffa501c55a641ab357276469273aeeb1 730 PANTHER PTHR18895:SF62 432 695 1.0E-109 T 22-04-2016 PP4_RS18875 ffa501c55a641ab357276469273aeeb1 730 SUPERFAMILY SSF53335 265 383 2.66E-35 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS18875 ffa501c55a641ab357276469273aeeb1 730 Hamap MF_01858 Ribosomal RNA large subunit methyltransferase K/L [rlmL]. 7 730 32.981 T 22-04-2016 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PP4_RS18875 ffa501c55a641ab357276469273aeeb1 730 Pfam PF01170 Putative RNA methylase family UPF0020 165 380 3.4E-43 T 22-04-2016 IPR000241 Putative RNA methylase domain KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PP4_RS18875 ffa501c55a641ab357276469273aeeb1 730 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 505 672 1.7E-19 T 22-04-2016 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 PP4_RS18875 ffa501c55a641ab357276469273aeeb1 730 Gene3D G3DSA:3.40.50.150 463 728 1.1E-73 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS18875 ffa501c55a641ab357276469273aeeb1 730 SUPERFAMILY SSF53335 144 224 2.66E-35 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS18875 ffa501c55a641ab357276469273aeeb1 730 PIRSF PIRSF037618 2 730 0.0 T 22-04-2016 IPR017244 Ribosomal RNA large subunit methyltransferase K/L GO:0005737|GO:0008990|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PP4_RS18875 ffa501c55a641ab357276469273aeeb1 730 SMART SM00981 59 157 3.0E-22 T 22-04-2016 IPR004114 THUMP domain GO:0003723 PP4_RS18875 ffa501c55a641ab357276469273aeeb1 730 SUPERFAMILY SSF53335 426 725 4.37E-68 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS18875 ffa501c55a641ab357276469273aeeb1 730 PANTHER PTHR18895 432 695 1.0E-109 T 22-04-2016 PP4_RS18875 ffa501c55a641ab357276469273aeeb1 730 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 313 319 - T 22-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 PP4_RS18875 ffa501c55a641ab357276469273aeeb1 730 Gene3D G3DSA:3.40.50.150 151 221 1.4E-18 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS18875 ffa501c55a641ab357276469273aeeb1 730 Gene3D G3DSA:3.40.50.150 262 366 1.4E-18 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS18875 ffa501c55a641ab357276469273aeeb1 730 Pfam PF02926 THUMP domain 43 156 1.0E-9 T 22-04-2016 IPR004114 THUMP domain GO:0003723 PP4_RS03845 504fd6b0fb3f93172547ba55838ea462 87 Pfam PF12266 Protein of unknown function (DUF3613) 27 78 6.8E-13 T 22-04-2016 IPR022053 Protein of unknown function DUF3613 PP4_RS16835 c37b2b05060b1df79c69f1dc7ba783ee 289 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 2.4E-23 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16835 c37b2b05060b1df79c69f1dc7ba783ee 289 Pfam PF03466 LysR substrate binding domain 93 287 2.1E-38 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS16835 c37b2b05060b1df79c69f1dc7ba783ee 289 PANTHER PTHR30126 2 289 9.3E-162 T 22-04-2016 PP4_RS16835 c37b2b05060b1df79c69f1dc7ba783ee 289 Gene3D G3DSA:1.10.10.10 6 87 1.9E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16835 c37b2b05060b1df79c69f1dc7ba783ee 289 SUPERFAMILY SSF46785 3 84 4.32E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16835 c37b2b05060b1df79c69f1dc7ba783ee 289 TIGRFAM TIGR03339 phn_lysR: aminoethylphosphonate catabolism associated LysR family transcriptional regulator 7 285 2.8E-122 T 22-04-2016 IPR017724 Aminoethylphosphonate utilisation-associated transcription regulator, LysR-type PP4_RS16835 c37b2b05060b1df79c69f1dc7ba783ee 289 SUPERFAMILY SSF53850 94 287 2.38E-37 T 22-04-2016 PP4_RS16835 c37b2b05060b1df79c69f1dc7ba783ee 289 PANTHER PTHR30126:SF17 2 289 9.3E-162 T 22-04-2016 PP4_RS16835 c37b2b05060b1df79c69f1dc7ba783ee 289 Gene3D G3DSA:3.40.190.10 104 174 2.3E-16 T 22-04-2016 PP4_RS16835 c37b2b05060b1df79c69f1dc7ba783ee 289 Gene3D G3DSA:3.40.190.10 175 257 2.4E-23 T 22-04-2016 PP4_RS16835 c37b2b05060b1df79c69f1dc7ba783ee 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.1E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16835 c37b2b05060b1df79c69f1dc7ba783ee 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.1E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16835 c37b2b05060b1df79c69f1dc7ba783ee 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.1E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS15425 6a7bd538d299623bc63e9742bf89bcb0 251 Pfam PF02585 GlcNAc-PI de-N-acetylase 43 169 4.9E-21 T 22-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related PP4_RS15425 6a7bd538d299623bc63e9742bf89bcb0 251 Gene3D G3DSA:3.40.50.10320 37 229 7.0E-36 T 22-04-2016 IPR024078 Putative deacetylase LmbE-like domain PP4_RS15425 6a7bd538d299623bc63e9742bf89bcb0 251 PANTHER PTHR12993 38 224 3.6E-15 T 22-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related PP4_RS15425 6a7bd538d299623bc63e9742bf89bcb0 251 SUPERFAMILY SSF102588 38 228 1.31E-39 T 22-04-2016 IPR024078 Putative deacetylase LmbE-like domain PP4_RS16855 17b8e5196d296d881c0df205de78400e 280 Pfam PF04773 FecR protein 74 165 1.2E-17 T 22-04-2016 IPR006860 FecR protein PP4_RS16855 17b8e5196d296d881c0df205de78400e 280 PANTHER PTHR30273:SF2 6 280 8.8E-40 T 22-04-2016 PP4_RS16855 17b8e5196d296d881c0df205de78400e 280 PIRSF PIRSF018266 4 278 2.3E-59 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS16855 17b8e5196d296d881c0df205de78400e 280 PANTHER PTHR30273 6 280 8.8E-40 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS10115 211e7213c021599fb25d924afe8f55a8 201 Gene3D G3DSA:3.30.1360.120 110 199 7.4E-5 T 22-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 PP4_RS10115 211e7213c021599fb25d924afe8f55a8 201 Gene3D G3DSA:3.30.1360.120 16 34 7.4E-5 T 22-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 PP4_RS10115 211e7213c021599fb25d924afe8f55a8 201 Pfam PF04268 Sarcosine oxidase, gamma subunit family 44 162 8.0E-10 T 22-04-2016 IPR007375 Sarcosine oxidase, gamma subunit KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 PP4_RS10115 211e7213c021599fb25d924afe8f55a8 201 SUPERFAMILY SSF103025 20 199 2.98E-16 T 22-04-2016 PP4_RS13445 39ac7efae9891c6f6cc67cf43ea1eefa 309 SUPERFAMILY SSF52402 2 185 2.16E-54 T 22-04-2016 PP4_RS13445 39ac7efae9891c6f6cc67cf43ea1eefa 309 PIRSF PIRSF000089 1 309 9.7E-107 T 22-04-2016 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 PP4_RS13445 39ac7efae9891c6f6cc67cf43ea1eefa 309 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 253 279 - T 22-04-2016 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site PP4_RS13445 39ac7efae9891c6f6cc67cf43ea1eefa 309 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 190 272 2.5E-36 T 22-04-2016 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal PP4_RS13445 39ac7efae9891c6f6cc67cf43ea1eefa 309 SMART SM00893 3 182 3.9E-51 T 22-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 PP4_RS13445 39ac7efae9891c6f6cc67cf43ea1eefa 309 PANTHER PTHR10909:SF294 104 306 9.9E-123 T 22-04-2016 PP4_RS13445 39ac7efae9891c6f6cc67cf43ea1eefa 309 PANTHER PTHR10909 104 306 9.9E-123 T 22-04-2016 PP4_RS13445 39ac7efae9891c6f6cc67cf43ea1eefa 309 Gene3D G3DSA:3.40.50.620 1 182 2.4E-60 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS13445 39ac7efae9891c6f6cc67cf43ea1eefa 309 Gene3D G3DSA:3.40.50.1220 185 308 5.1E-62 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain PP4_RS13445 39ac7efae9891c6f6cc67cf43ea1eefa 309 Pfam PF01012 Electron transfer flavoprotein domain 4 167 4.5E-39 T 22-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 PP4_RS13445 39ac7efae9891c6f6cc67cf43ea1eefa 309 SUPERFAMILY SSF52467 187 308 1.53E-49 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain PP4_RS21280 6f4e26005fcdddabe8c16fcf64cbe73b 540 Pfam PF00672 HAMP domain 192 258 1.6E-14 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS21280 6f4e26005fcdddabe8c16fcf64cbe73b 540 SUPERFAMILY SSF58104 231 540 3.66E-60 T 22-04-2016 PP4_RS21280 6f4e26005fcdddabe8c16fcf64cbe73b 540 SMART SM00304 211 263 1.5E-11 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS21280 6f4e26005fcdddabe8c16fcf64cbe73b 540 SMART SM00283 271 539 1.7E-44 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS21280 6f4e26005fcdddabe8c16fcf64cbe73b 540 PANTHER PTHR32089:SF1 178 540 1.6E-91 T 22-04-2016 PP4_RS21280 6f4e26005fcdddabe8c16fcf64cbe73b 540 PANTHER PTHR32089 178 540 1.6E-91 T 22-04-2016 PP4_RS21280 6f4e26005fcdddabe8c16fcf64cbe73b 540 Pfam PF12729 Four helix bundle sensory module for signal transduction 3 179 8.6E-14 T 22-04-2016 IPR024478 4HB MCP domain PP4_RS21280 6f4e26005fcdddabe8c16fcf64cbe73b 540 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 325 538 1.6E-40 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS21280 6f4e26005fcdddabe8c16fcf64cbe73b 540 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 405 434 1.2E-18 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS21280 6f4e26005fcdddabe8c16fcf64cbe73b 540 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 299 328 1.2E-18 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS21280 6f4e26005fcdddabe8c16fcf64cbe73b 540 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 376 403 1.2E-18 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS21280 6f4e26005fcdddabe8c16fcf64cbe73b 540 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 1 17 1.2E-18 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS21280 6f4e26005fcdddabe8c16fcf64cbe73b 540 Gene3D G3DSA:1.10.287.950 294 510 3.1E-46 T 22-04-2016 PP4_RS12190 80a5db8c7f74f1bc15111261c6faf677 363 PANTHER PTHR10799 40 191 3.8E-23 T 22-04-2016 PP4_RS12190 80a5db8c7f74f1bc15111261c6faf677 363 PANTHER PTHR10799 234 354 3.8E-23 T 22-04-2016 PP4_RS12190 80a5db8c7f74f1bc15111261c6faf677 363 Pfam PF00990 Diguanylate cyclase, GGDEF domain 204 351 2.7E-35 T 22-04-2016 IPR000160 GGDEF domain PP4_RS12190 80a5db8c7f74f1bc15111261c6faf677 363 SUPERFAMILY SSF55073 209 356 1.18E-36 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS12190 80a5db8c7f74f1bc15111261c6faf677 363 Gene3D G3DSA:3.30.70.270 206 360 2.2E-43 T 22-04-2016 PP4_RS12190 80a5db8c7f74f1bc15111261c6faf677 363 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 202 354 1.7E-35 T 22-04-2016 IPR000160 GGDEF domain PP4_RS12190 80a5db8c7f74f1bc15111261c6faf677 363 PANTHER PTHR10799:SF750 40 191 3.8E-23 T 22-04-2016 PP4_RS12190 80a5db8c7f74f1bc15111261c6faf677 363 PANTHER PTHR10799:SF750 234 354 3.8E-23 T 22-04-2016 PP4_RS12190 80a5db8c7f74f1bc15111261c6faf677 363 SMART SM00267 193 355 8.7E-48 T 22-04-2016 IPR000160 GGDEF domain PP4_RS14185 b6f9d7455281e7efe6592c2f739c5e52 366 Pfam PF00296 Luciferase-like monooxygenase 10 326 9.8E-78 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS14185 b6f9d7455281e7efe6592c2f739c5e52 366 PANTHER PTHR30011 1 358 8.6E-137 T 22-04-2016 PP4_RS14185 b6f9d7455281e7efe6592c2f739c5e52 366 SUPERFAMILY SSF51679 1 353 6.54E-81 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS14185 b6f9d7455281e7efe6592c2f739c5e52 366 PANTHER PTHR30011:SF29 1 358 8.6E-137 T 22-04-2016 PP4_RS14185 b6f9d7455281e7efe6592c2f739c5e52 366 Gene3D G3DSA:3.20.20.30 1 252 1.0E-91 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS14185 b6f9d7455281e7efe6592c2f739c5e52 366 Gene3D G3DSA:3.20.20.30 286 352 1.0E-91 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS22550 69390624c85f41871aefbf5253b1e458 244 Pfam PF03692 Putative zinc- or iron-chelating domain 9 113 6.6E-12 T 22-04-2016 IPR005358 Putative zinc- or iron-chelating domain containing protein PP4_RS02555 3c6ce58f4531a6428ae8600d51e6bb22 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 27.131 T 22-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 PP4_RS02555 3c6ce58f4531a6428ae8600d51e6bb22 122 Gene3D G3DSA:2.40.150.20 1 122 1.5E-55 T 22-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 PP4_RS02555 3c6ce58f4531a6428ae8600d51e6bb22 122 SUPERFAMILY SSF50193 1 122 5.76E-52 T 22-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 PP4_RS02555 3c6ce58f4531a6428ae8600d51e6bb22 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 4.9E-58 T 22-04-2016 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 PP4_RS02555 3c6ce58f4531a6428ae8600d51e6bb22 122 SMART SM01374 1 122 5.2E-86 T 22-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 PP4_RS02555 3c6ce58f4531a6428ae8600d51e6bb22 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 8.0E-55 T 22-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 PP4_RS02555 3c6ce58f4531a6428ae8600d51e6bb22 122 PANTHER PTHR11761 1 122 3.1E-78 T 22-04-2016 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 PP4_RS02555 3c6ce58f4531a6428ae8600d51e6bb22 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 22-04-2016 IPR019972 Ribosomal protein L14P, conserved site PP4_RS22230 3f88a45d003b4b495a23f959895c4568 263 SUPERFAMILY SSF56317 8 252 3.27E-65 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PP4_RS22230 3f88a45d003b4b495a23f959895c4568 263 PANTHER PTHR23088 1 258 4.2E-135 T 22-04-2016 PP4_RS22230 3f88a45d003b4b495a23f959895c4568 263 PANTHER PTHR23088:SF28 1 258 4.2E-135 T 22-04-2016 PP4_RS22230 3f88a45d003b4b495a23f959895c4568 263 Pfam PF00795 Carbon-nitrogen hydrolase 11 248 4.2E-32 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PP4_RS22230 3f88a45d003b4b495a23f959895c4568 263 Gene3D G3DSA:3.60.110.10 7 257 3.7E-66 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PP4_RS11635 733de27b4cd57dcb8891a63c2015a2fb 292 Gene3D G3DSA:1.10.10.60 241 288 1.7E-12 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS11635 733de27b4cd57dcb8891a63c2015a2fb 292 SMART SM00342 203 286 1.8E-17 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS11635 733de27b4cd57dcb8891a63c2015a2fb 292 Pfam PF02311 AraC-like ligand binding domain 33 164 9.8E-8 T 22-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PP4_RS11635 733de27b4cd57dcb8891a63c2015a2fb 292 Gene3D G3DSA:1.10.10.60 180 239 9.5E-4 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS11635 733de27b4cd57dcb8891a63c2015a2fb 292 Pfam PF12833 Helix-turn-helix domain 210 287 4.3E-16 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS11635 733de27b4cd57dcb8891a63c2015a2fb 292 SUPERFAMILY SSF51182 39 147 5.07E-10 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS11635 733de27b4cd57dcb8891a63c2015a2fb 292 PANTHER PTHR11019:SF45 24 292 3.6E-59 T 22-04-2016 PP4_RS11635 733de27b4cd57dcb8891a63c2015a2fb 292 PANTHER PTHR11019 24 292 3.6E-59 T 22-04-2016 PP4_RS11635 733de27b4cd57dcb8891a63c2015a2fb 292 SUPERFAMILY SSF46689 242 289 4.48E-10 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS11635 733de27b4cd57dcb8891a63c2015a2fb 292 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 270 286 9.7E-5 T 22-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PP4_RS11635 733de27b4cd57dcb8891a63c2015a2fb 292 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 255 270 9.7E-5 T 22-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PP4_RS11635 733de27b4cd57dcb8891a63c2015a2fb 292 Gene3D G3DSA:2.60.120.280 38 172 3.2E-8 T 22-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PP4_RS00710 2b375d1b1c3a5106bc967c2305e5b073 106 TIGRFAM TIGR02448 TIGR02448: conserverd hypothetical protein 1 105 1.0E-32 T 22-04-2016 IPR012661 Conserved hypothetical protein CHP02448 PP4_RS00710 2b375d1b1c3a5106bc967c2305e5b073 106 Pfam PF09498 Protein of unknown function (DUF2388) 37 105 1.9E-29 T 22-04-2016 IPR012661 Conserved hypothetical protein CHP02448 PP4_RS01075 79cf8bb2b7ae616d25e3b89effc803de 650 SUPERFAMILY SSF53300 225 412 1.71E-14 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS01075 79cf8bb2b7ae616d25e3b89effc803de 650 Gene3D G3DSA:3.40.50.410 226 355 2.6E-4 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS16435 9af60de344982b020b0751530bdc9574 403 PANTHER PTHR23501:SF4 15 386 9.9E-99 T 22-04-2016 PP4_RS16435 9af60de344982b020b0751530bdc9574 403 SUPERFAMILY SSF103473 14 390 3.92E-53 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS16435 9af60de344982b020b0751530bdc9574 403 PANTHER PTHR23501 15 386 9.9E-99 T 22-04-2016 PP4_RS16435 9af60de344982b020b0751530bdc9574 403 Pfam PF07690 Major Facilitator Superfamily 24 344 1.0E-32 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS16435 9af60de344982b020b0751530bdc9574 403 Gene3D G3DSA:1.20.1250.20 213 386 1.3E-11 T 22-04-2016 PP4_RS16435 9af60de344982b020b0751530bdc9574 403 Gene3D G3DSA:1.20.1250.20 20 201 6.3E-27 T 22-04-2016 PP4_RS11210 f080be904bf706e5e37fae7aec669574 151 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 37 45 - T 22-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 PP4_RS11210 f080be904bf706e5e37fae7aec669574 151 Gene3D G3DSA:3.10.20.30 2 72 6.2E-28 T 22-04-2016 IPR012675 Beta-grasp domain PP4_RS11210 f080be904bf706e5e37fae7aec669574 151 PANTHER PTHR11908:SF82 1 138 3.9E-21 T 22-04-2016 PP4_RS11210 f080be904bf706e5e37fae7aec669574 151 Pfam PF01799 [2Fe-2S] binding domain 71 142 6.2E-22 T 22-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 PP4_RS11210 f080be904bf706e5e37fae7aec669574 151 PANTHER PTHR11908 1 138 3.9E-21 T 22-04-2016 PP4_RS11210 f080be904bf706e5e37fae7aec669574 151 SUPERFAMILY SSF47741 82 147 6.54E-25 T 22-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 PP4_RS11210 f080be904bf706e5e37fae7aec669574 151 SUPERFAMILY SSF54292 2 75 2.23E-24 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS11210 f080be904bf706e5e37fae7aec669574 151 Gene3D G3DSA:1.10.150.120 73 148 6.7E-25 T 22-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 PP4_RS11210 f080be904bf706e5e37fae7aec669574 151 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 4 61 2.3E-6 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS06555 f29b98984c281da218cb0fca18cd4a7f 199 PANTHER PTHR10204 1 199 4.5E-93 T 22-04-2016 PP4_RS06555 f29b98984c281da218cb0fca18cd4a7f 199 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 2 199 33.578 T 22-04-2016 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 PP4_RS06555 f29b98984c281da218cb0fca18cd4a7f 199 SUPERFAMILY SSF52218 1 198 8.21E-60 T 22-04-2016 IPR029039 Flavoprotein-like domain PP4_RS06555 f29b98984c281da218cb0fca18cd4a7f 199 Gene3D G3DSA:3.40.50.360 1 199 2.2E-73 T 22-04-2016 IPR029039 Flavoprotein-like domain PP4_RS06555 f29b98984c281da218cb0fca18cd4a7f 199 PANTHER PTHR10204:SF16 1 199 4.5E-93 T 22-04-2016 PP4_RS06555 f29b98984c281da218cb0fca18cd4a7f 199 Pfam PF02525 Flavodoxin-like fold 3 197 2.6E-52 T 22-04-2016 IPR003680 Flavodoxin-like fold PP4_RS19535 6651eac56077a371e4497e8fa318d988 332 PANTHER PTHR30341 9 330 3.4E-130 T 22-04-2016 PP4_RS19535 6651eac56077a371e4497e8fa318d988 332 PANTHER PTHR30341:SF1 9 330 3.4E-130 T 22-04-2016 PP4_RS19535 6651eac56077a371e4497e8fa318d988 332 Pfam PF01343 Peptidase family S49 147 290 5.8E-31 T 22-04-2016 IPR002142 Peptidase S49 GO:0006508|GO:0008233 PP4_RS19535 6651eac56077a371e4497e8fa318d988 332 SUPERFAMILY SSF52096 76 190 5.42E-40 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS19535 6651eac56077a371e4497e8fa318d988 332 SUPERFAMILY SSF52096 219 281 5.42E-40 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS19535 6651eac56077a371e4497e8fa318d988 332 Gene3D G3DSA:3.90.226.10 220 307 1.3E-47 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS19535 6651eac56077a371e4497e8fa318d988 332 Gene3D G3DSA:3.90.226.10 52 182 1.3E-47 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS20795 5eaac3e15b8c04a1bc3dcd8b04eec005 223 Gene3D G3DSA:1.10.340.30 38 145 1.5E-28 T 22-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 PP4_RS20795 5eaac3e15b8c04a1bc3dcd8b04eec005 223 Pfam PF03352 Methyladenine glycosylase 39 130 2.3E-19 T 22-04-2016 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 PP4_RS20795 5eaac3e15b8c04a1bc3dcd8b04eec005 223 SUPERFAMILY SSF48150 37 183 2.51E-39 T 22-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 PP4_RS20795 5eaac3e15b8c04a1bc3dcd8b04eec005 223 PANTHER PTHR30037:SF3 174 206 9.2E-109 T 22-04-2016 PP4_RS20795 5eaac3e15b8c04a1bc3dcd8b04eec005 223 PANTHER PTHR30037:SF3 1 156 9.2E-109 T 22-04-2016 PP4_RS20795 5eaac3e15b8c04a1bc3dcd8b04eec005 223 PANTHER PTHR30037 174 206 9.2E-109 T 22-04-2016 PP4_RS20795 5eaac3e15b8c04a1bc3dcd8b04eec005 223 PANTHER PTHR30037 1 156 9.2E-109 T 22-04-2016 PP4_RS02035 ca53440b75a1907adf2dec6edf097ea6 592 Gene3D G3DSA:1.10.540.10 39 160 8.6E-12 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS02035 ca53440b75a1907adf2dec6edf097ea6 592 SUPERFAMILY SSF56645 38 280 3.8E-51 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 PP4_RS02035 ca53440b75a1907adf2dec6edf097ea6 592 SUPERFAMILY SSF47203 289 461 5.15E-48 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS02035 ca53440b75a1907adf2dec6edf097ea6 592 PANTHER PTHR10909 1 477 2.5E-258 T 22-04-2016 PP4_RS02035 ca53440b75a1907adf2dec6edf097ea6 592 Gene3D G3DSA:2.40.110.10 162 268 4.0E-26 T 22-04-2016 PP4_RS02035 ca53440b75a1907adf2dec6edf097ea6 592 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 163 273 6.3E-16 T 22-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 PP4_RS02035 ca53440b75a1907adf2dec6edf097ea6 592 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 42 158 1.7E-8 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS02035 ca53440b75a1907adf2dec6edf097ea6 592 Gene3D G3DSA:1.20.140.10 269 458 9.9E-52 T 22-04-2016 PP4_RS02035 ca53440b75a1907adf2dec6edf097ea6 592 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 468 585 4.4E-37 T 22-04-2016 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain PP4_RS02035 ca53440b75a1907adf2dec6edf097ea6 592 PANTHER PTHR10909:SF296 1 477 2.5E-258 T 22-04-2016 PP4_RS02035 ca53440b75a1907adf2dec6edf097ea6 592 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 3 34 3.9E-14 T 22-04-2016 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria PP4_RS02035 ca53440b75a1907adf2dec6edf097ea6 592 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 283 452 5.6E-24 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS17625 f5263bc568fa61f49372d15e07b00e89 265 SUPERFAMILY SSF54637 1 109 2.01E-26 T 22-04-2016 IPR029069 HotDog domain PP4_RS17625 f5263bc568fa61f49372d15e07b00e89 265 Gene3D G3DSA:3.10.129.10 2 109 1.6E-21 T 22-04-2016 IPR029069 HotDog domain PP4_RS17625 f5263bc568fa61f49372d15e07b00e89 265 Pfam PF13622 Thioesterase-like superfamily 19 263 8.4E-52 T 22-04-2016 PP4_RS17625 f5263bc568fa61f49372d15e07b00e89 265 Gene3D G3DSA:3.10.129.10 138 259 5.8E-6 T 22-04-2016 IPR029069 HotDog domain PP4_RS17625 f5263bc568fa61f49372d15e07b00e89 265 SUPERFAMILY SSF54637 113 263 2.75E-25 T 22-04-2016 IPR029069 HotDog domain PP4_RS17625 f5263bc568fa61f49372d15e07b00e89 265 PANTHER PTHR11066 19 255 5.3E-20 T 22-04-2016 IPR003703 Acyl-CoA thioesterase GO:0006637|GO:0047617 PP4_RS04300 e973aeacd3840467802eddd8df01bfbf 455 Gene3D G3DSA:3.90.190.20 315 448 2.3E-43 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PP4_RS04300 e973aeacd3840467802eddd8df01bfbf 455 Pfam PF02875 Mur ligase family, glutamate ligase domain 325 394 8.1E-12 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PP4_RS04300 e973aeacd3840467802eddd8df01bfbf 455 Pfam PF01225 Mur ligase family, catalytic domain 25 94 1.3E-11 T 22-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 PP4_RS04300 e973aeacd3840467802eddd8df01bfbf 455 PANTHER PTHR23135 12 447 3.4E-153 T 22-04-2016 PP4_RS04300 e973aeacd3840467802eddd8df01bfbf 455 Gene3D G3DSA:3.40.1190.10 84 313 1.6E-70 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PP4_RS04300 e973aeacd3840467802eddd8df01bfbf 455 SUPERFAMILY SSF53244 316 447 2.98E-36 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PP4_RS04300 e973aeacd3840467802eddd8df01bfbf 455 Pfam PF08245 Mur ligase middle domain 107 296 5.3E-45 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PP4_RS04300 e973aeacd3840467802eddd8df01bfbf 455 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 30 447 1.1E-141 T 22-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PP4_RS04300 e973aeacd3840467802eddd8df01bfbf 455 PANTHER PTHR23135:SF3 12 447 3.4E-153 T 22-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PP4_RS04300 e973aeacd3840467802eddd8df01bfbf 455 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 5 448 32.926 T 22-04-2016 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PP4_RS04300 e973aeacd3840467802eddd8df01bfbf 455 SUPERFAMILY SSF53623 102 314 3.14E-55 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PP4_RS04300 e973aeacd3840467802eddd8df01bfbf 455 SUPERFAMILY SSF63418 3 97 6.8E-26 T 22-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 PP4_RS04300 e973aeacd3840467802eddd8df01bfbf 455 Gene3D G3DSA:3.40.1390.10 4 82 2.2E-25 T 22-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 PP4_RS05960 f843358dbbb108ea491e8a19b1f3ee21 688 Pfam PF02743 Cache domain 53 285 1.3E-13 T 22-04-2016 IPR033479 Double Cache domain 1 PP4_RS05960 f843358dbbb108ea491e8a19b1f3ee21 688 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 499 686 3.6E-48 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS05960 f843358dbbb108ea491e8a19b1f3ee21 688 Gene3D G3DSA:1.10.287.950 440 657 4.0E-57 T 22-04-2016 PP4_RS05960 f843358dbbb108ea491e8a19b1f3ee21 688 SMART SM00304 357 411 3.2E-10 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS05960 f843358dbbb108ea491e8a19b1f3ee21 688 SUPERFAMILY SSF58104 379 688 1.44E-79 T 22-04-2016 PP4_RS05960 f843358dbbb108ea491e8a19b1f3ee21 688 PANTHER PTHR32089 24 688 2.0E-218 T 22-04-2016 PP4_RS05960 f843358dbbb108ea491e8a19b1f3ee21 688 Gene3D G3DSA:3.30.450.20 186 234 1.7E-5 T 22-04-2016 PP4_RS05960 f843358dbbb108ea491e8a19b1f3ee21 688 SMART SM00283 426 687 9.3E-75 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS05960 f843358dbbb108ea491e8a19b1f3ee21 688 Pfam PF00672 HAMP domain 338 407 2.3E-14 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS05960 f843358dbbb108ea491e8a19b1f3ee21 688 PANTHER PTHR32089:SF34 24 688 2.0E-218 T 22-04-2016 PP4_RS05050 73abb9ffbc4bc6d953da691f97775a4a 805 Gene3D G3DSA:3.40.50.300 345 524 2.4E-34 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS05050 73abb9ffbc4bc6d953da691f97775a4a 805 SUPERFAMILY SSF88697 42 235 6.71E-18 T 22-04-2016 IPR015947 PUA-like domain PP4_RS05050 73abb9ffbc4bc6d953da691f97775a4a 805 SMART SM00464 39 236 6.2E-19 T 22-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 PP4_RS05050 73abb9ffbc4bc6d953da691f97775a4a 805 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 737 756 5.5E-48 T 22-04-2016 PP4_RS05050 73abb9ffbc4bc6d953da691f97775a4a 805 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 707 726 5.5E-48 T 22-04-2016 PP4_RS05050 73abb9ffbc4bc6d953da691f97775a4a 805 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 760 778 5.5E-48 T 22-04-2016 PP4_RS05050 73abb9ffbc4bc6d953da691f97775a4a 805 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 391 410 5.5E-48 T 22-04-2016 PP4_RS05050 73abb9ffbc4bc6d953da691f97775a4a 805 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 628 644 5.5E-48 T 22-04-2016 PP4_RS05050 73abb9ffbc4bc6d953da691f97775a4a 805 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 387 525 4.9E-23 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 PP4_RS05050 73abb9ffbc4bc6d953da691f97775a4a 805 PIRSF PIRSF001174 19 805 2.2E-272 T 22-04-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 PP4_RS05050 73abb9ffbc4bc6d953da691f97775a4a 805 SUPERFAMILY SSF52540 345 622 1.7E-49 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS05050 73abb9ffbc4bc6d953da691f97775a4a 805 Gene3D G3DSA:1.10.8.60 527 619 4.1E-29 T 22-04-2016 PP4_RS05050 73abb9ffbc4bc6d953da691f97775a4a 805 PANTHER PTHR10046:SF24 15 805 0.0 T 22-04-2016 PP4_RS05050 73abb9ffbc4bc6d953da691f97775a4a 805 Hamap MF_01973 Lon protease [lon]. 40 804 58.824 T 22-04-2016 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 PP4_RS05050 73abb9ffbc4bc6d953da691f97775a4a 805 Gene3D G3DSA:3.30.230.10 629 805 4.6E-63 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PP4_RS05050 73abb9ffbc4bc6d953da691f97775a4a 805 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 710 718 - T 22-04-2016 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 PP4_RS05050 73abb9ffbc4bc6d953da691f97775a4a 805 SMART SM00382 383 528 6.7E-13 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS05050 73abb9ffbc4bc6d953da691f97775a4a 805 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 605 804 2.0E-76 T 22-04-2016 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 PP4_RS05050 73abb9ffbc4bc6d953da691f97775a4a 805 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 40 235 6.4E-24 T 22-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 PP4_RS05050 73abb9ffbc4bc6d953da691f97775a4a 805 PANTHER PTHR10046 15 805 0.0 T 22-04-2016 IPR027065 Lon protease GO:0004176|GO:0004252|GO:0005524|GO:0030163 PP4_RS05050 73abb9ffbc4bc6d953da691f97775a4a 805 TIGRFAM TIGR00763 lon: endopeptidase La 42 805 3.9E-273 T 22-04-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 PP4_RS05050 73abb9ffbc4bc6d953da691f97775a4a 805 SUPERFAMILY SSF54211 629 804 8.72E-46 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PP4_RS20755 252480adf5165fcb5a2711666dd67527 927 Pfam PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) 36 169 2.1E-19 T 22-04-2016 IPR019247 Histidine kinase BarA, N-terminal PP4_RS20755 252480adf5165fcb5a2711666dd67527 927 SUPERFAMILY SSF52172 528 651 7.03E-9 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS20755 252480adf5165fcb5a2711666dd67527 927 SMART SM00448 668 784 3.0E-38 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS20755 252480adf5165fcb5a2711666dd67527 927 PANTHER PTHR24423 4 10 3.8E-152 T 22-04-2016 PP4_RS20755 252480adf5165fcb5a2711666dd67527 927 PANTHER PTHR24423 577 787 3.8E-152 T 22-04-2016 PP4_RS20755 252480adf5165fcb5a2711666dd67527 927 PANTHER PTHR24423 187 241 3.8E-152 T 22-04-2016 PP4_RS20755 252480adf5165fcb5a2711666dd67527 927 PANTHER PTHR24423 281 516 3.8E-152 T 22-04-2016 PP4_RS20755 252480adf5165fcb5a2711666dd67527 927 Gene3D G3DSA:1.10.287.130 277 346 1.5E-19 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS20755 252480adf5165fcb5a2711666dd67527 927 Gene3D G3DSA:3.40.50.2300 531 655 5.7E-6 T 22-04-2016 PP4_RS20755 252480adf5165fcb5a2711666dd67527 927 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 397 512 2.2E-27 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS20755 252480adf5165fcb5a2711666dd67527 927 Pfam PF00512 His Kinase A (phospho-acceptor) domain 286 350 2.2E-22 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS20755 252480adf5165fcb5a2711666dd67527 927 SUPERFAMILY SSF158472 193 243 8.37E-8 T 22-04-2016 PP4_RS20755 252480adf5165fcb5a2711666dd67527 927 SMART SM00304 193 245 4.6E-8 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS20755 252480adf5165fcb5a2711666dd67527 927 Pfam PF00072 Response regulator receiver domain 670 784 6.3E-26 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS20755 252480adf5165fcb5a2711666dd67527 927 SMART SM00387 397 513 1.7E-38 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS20755 252480adf5165fcb5a2711666dd67527 927 Gene3D G3DSA:1.20.120.160 822 908 1.0E-16 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS20755 252480adf5165fcb5a2711666dd67527 927 PRINTS PR00344 Bacterial sensor protein C-terminal signature 497 510 6.4E-16 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS20755 252480adf5165fcb5a2711666dd67527 927 PRINTS PR00344 Bacterial sensor protein C-terminal signature 473 491 6.4E-16 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS20755 252480adf5165fcb5a2711666dd67527 927 PRINTS PR00344 Bacterial sensor protein C-terminal signature 438 452 6.4E-16 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS20755 252480adf5165fcb5a2711666dd67527 927 PRINTS PR00344 Bacterial sensor protein C-terminal signature 456 466 6.4E-16 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS20755 252480adf5165fcb5a2711666dd67527 927 SMART SM00073 821 917 8.2E-7 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS20755 252480adf5165fcb5a2711666dd67527 927 Gene3D G3DSA:3.30.565.10 352 516 7.9E-46 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS20755 252480adf5165fcb5a2711666dd67527 927 Pfam PF01627 Hpt domain 830 911 1.4E-11 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS20755 252480adf5165fcb5a2711666dd67527 927 Gene3D G3DSA:3.40.50.2300 666 789 1.8E-39 T 22-04-2016 PP4_RS20755 252480adf5165fcb5a2711666dd67527 927 SUPERFAMILY SSF55874 339 510 1.11E-44 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS20755 252480adf5165fcb5a2711666dd67527 927 SUPERFAMILY SSF47384 271 351 5.49E-23 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS20755 252480adf5165fcb5a2711666dd67527 927 SUPERFAMILY SSF52172 667 788 7.54E-36 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS20755 252480adf5165fcb5a2711666dd67527 927 SUPERFAMILY SSF47226 810 905 5.5E-21 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS20755 252480adf5165fcb5a2711666dd67527 927 SUPERFAMILY SSF47226 767 780 5.5E-21 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS20755 252480adf5165fcb5a2711666dd67527 927 Pfam PF00672 HAMP domain 174 241 4.5E-15 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS20755 252480adf5165fcb5a2711666dd67527 927 SMART SM00388 285 350 1.3E-26 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS10640 49b4a7fc2d51cedae42d8cf232594657 468 Pfam PF00324 Amino acid permease 18 450 8.6E-121 T 22-04-2016 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 PP4_RS10640 49b4a7fc2d51cedae42d8cf232594657 468 PANTHER PTHR11785:SF399 3 457 1.9E-256 T 22-04-2016 PP4_RS10640 49b4a7fc2d51cedae42d8cf232594657 468 PANTHER PTHR11785 3 457 1.9E-256 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS10640 49b4a7fc2d51cedae42d8cf232594657 468 PIRSF PIRSF006060 1 462 2.2E-73 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS10640 49b4a7fc2d51cedae42d8cf232594657 468 ProSitePatterns PS00218 Amino acid permeases signature. 43 74 - T 22-04-2016 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 PP4_RS17975 570c22d8dee94905a578227d3c3691e2 546 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 446 455 - T 22-04-2016 IPR025944 Sigma-54 interaction domain, conserved site PP4_RS17975 570c22d8dee94905a578227d3c3691e2 546 SUPERFAMILY SSF52540 230 463 9.97E-63 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS17975 570c22d8dee94905a578227d3c3691e2 546 PANTHER PTHR32071 219 543 6.1E-131 T 22-04-2016 PP4_RS17975 570c22d8dee94905a578227d3c3691e2 546 Pfam PF00158 Sigma-54 interaction domain 231 397 2.4E-66 T 22-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 PP4_RS17975 570c22d8dee94905a578227d3c3691e2 546 SUPERFAMILY SSF159800 23 191 9.15E-34 T 22-04-2016 PP4_RS17975 570c22d8dee94905a578227d3c3691e2 546 SMART SM00382 250 395 3.3E-13 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS17975 570c22d8dee94905a578227d3c3691e2 546 Gene3D G3DSA:1.10.10.60 506 543 3.6E-10 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS17975 570c22d8dee94905a578227d3c3691e2 546 TIGRFAM TIGR02329 propionate_PrpR: propionate catabolism operon regulatory protein PrpR 24 543 9.5E-155 T 22-04-2016 IPR012704 Signal transduction response regulator, propionate catabolism, transcriptional regulator PrpR GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0005737|GO:0019629 PP4_RS17975 570c22d8dee94905a578227d3c3691e2 546 Gene3D G3DSA:1.10.8.60 404 483 5.2E-16 T 22-04-2016 PP4_RS17975 570c22d8dee94905a578227d3c3691e2 546 Gene3D G3DSA:3.40.50.10660 104 179 2.4E-24 T 22-04-2016 PP4_RS17975 570c22d8dee94905a578227d3c3691e2 546 SUPERFAMILY SSF46689 446 544 6.27E-8 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS17975 570c22d8dee94905a578227d3c3691e2 546 Gene3D G3DSA:3.40.50.300 226 403 1.2E-58 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS17975 570c22d8dee94905a578227d3c3691e2 546 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 317 332 - T 22-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PP4_RS17975 570c22d8dee94905a578227d3c3691e2 546 Gene3D G3DSA:3.40.50.2300 24 103 3.7E-15 T 22-04-2016 PP4_RS17975 570c22d8dee94905a578227d3c3691e2 546 Pfam PF06506 Propionate catabolism activator 38 192 1.5E-33 T 22-04-2016 IPR010524 Signal transduction response regulator, propionate catabolism activator, N-terminal GO:0000156|GO:0000160|GO:0003677|GO:0005524 PP4_RS17975 570c22d8dee94905a578227d3c3691e2 546 Pfam PF02954 Bacterial regulatory protein, Fis family 514 543 2.5E-6 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS17975 570c22d8dee94905a578227d3c3691e2 546 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 254 267 - T 22-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 PP4_RS21740 d93f88a3c04605abd2730597bc21d69b 309 PIRSF PIRSF000723 1 301 6.1E-112 T 22-04-2016 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 PP4_RS21740 d93f88a3c04605abd2730597bc21d69b 309 PANTHER PTHR30409:SF1 1 302 1.5E-154 T 22-04-2016 PP4_RS21740 d93f88a3c04605abd2730597bc21d69b 309 Gene3D G3DSA:3.40.1160.10 1 299 3.1E-100 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PP4_RS21740 d93f88a3c04605abd2730597bc21d69b 309 SUPERFAMILY SSF53633 1 299 3.27E-79 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PP4_RS21740 d93f88a3c04605abd2730597bc21d69b 309 Pfam PF00696 Amino acid kinase family 1 280 5.3E-26 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PP4_RS21740 d93f88a3c04605abd2730597bc21d69b 309 PANTHER PTHR30409 1 302 1.5E-154 T 22-04-2016 PP4_RS21740 d93f88a3c04605abd2730597bc21d69b 309 PRINTS PR01469 Bacterial carbamate kinase signature 151 170 2.4E-68 T 22-04-2016 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 PP4_RS21740 d93f88a3c04605abd2730597bc21d69b 309 PRINTS PR01469 Bacterial carbamate kinase signature 41 60 2.4E-68 T 22-04-2016 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 PP4_RS21740 d93f88a3c04605abd2730597bc21d69b 309 PRINTS PR01469 Bacterial carbamate kinase signature 71 89 2.4E-68 T 22-04-2016 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 PP4_RS21740 d93f88a3c04605abd2730597bc21d69b 309 PRINTS PR01469 Bacterial carbamate kinase signature 103 122 2.4E-68 T 22-04-2016 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 PP4_RS21740 d93f88a3c04605abd2730597bc21d69b 309 PRINTS PR01469 Bacterial carbamate kinase signature 174 192 2.4E-68 T 22-04-2016 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 PP4_RS21740 d93f88a3c04605abd2730597bc21d69b 309 PRINTS PR01469 Bacterial carbamate kinase signature 205 220 2.4E-68 T 22-04-2016 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 PP4_RS21740 d93f88a3c04605abd2730597bc21d69b 309 PRINTS PR01469 Bacterial carbamate kinase signature 256 271 2.4E-68 T 22-04-2016 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 PP4_RS21740 d93f88a3c04605abd2730597bc21d69b 309 TIGRFAM TIGR00746 arcC: carbamate kinase 1 300 5.7E-132 T 22-04-2016 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 PP4_RS21270 321298b6f8cb053de07d509bb806f554 424 SUPERFAMILY SSF48452 332 417 3.34E-11 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS21270 321298b6f8cb053de07d509bb806f554 424 SMART SM00138 2 260 4.8E-36 T 22-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 PP4_RS21270 321298b6f8cb053de07d509bb806f554 424 SMART SM00028 355 388 0.047 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS21270 321298b6f8cb053de07d509bb806f554 424 SMART SM00028 389 422 220.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS21270 321298b6f8cb053de07d509bb806f554 424 PANTHER PTHR24422 4 417 4.5E-76 T 22-04-2016 PP4_RS21270 321298b6f8cb053de07d509bb806f554 424 Pfam PF03705 CheR methyltransferase, all-alpha domain 4 51 1.7E-5 T 22-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal PP4_RS21270 321298b6f8cb053de07d509bb806f554 424 SUPERFAMILY SSF53335 66 253 5.28E-43 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS21270 321298b6f8cb053de07d509bb806f554 424 SUPERFAMILY SSF47757 4 63 1.83E-5 T 22-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal PP4_RS21270 321298b6f8cb053de07d509bb806f554 424 Gene3D G3DSA:1.10.155.10 4 63 1.8E-6 T 22-04-2016 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal PP4_RS21270 321298b6f8cb053de07d509bb806f554 424 PANTHER PTHR24422:SF14 4 417 4.5E-76 T 22-04-2016 PP4_RS21270 321298b6f8cb053de07d509bb806f554 424 Pfam PF14559 Tetratricopeptide repeat 368 415 6.6E-6 T 22-04-2016 PP4_RS21270 321298b6f8cb053de07d509bb806f554 424 Gene3D G3DSA:3.40.50.150 66 251 1.3E-47 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS21270 321298b6f8cb053de07d509bb806f554 424 PRINTS PR00996 Glutamate methyltransferase family signature 98 118 9.5E-22 T 22-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 PP4_RS21270 321298b6f8cb053de07d509bb806f554 424 PRINTS PR00996 Glutamate methyltransferase family signature 200 214 9.5E-22 T 22-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 PP4_RS21270 321298b6f8cb053de07d509bb806f554 424 PRINTS PR00996 Glutamate methyltransferase family signature 59 71 9.5E-22 T 22-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 PP4_RS21270 321298b6f8cb053de07d509bb806f554 424 PRINTS PR00996 Glutamate methyltransferase family signature 219 242 9.5E-22 T 22-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 PP4_RS21270 321298b6f8cb053de07d509bb806f554 424 PRINTS PR00996 Glutamate methyltransferase family signature 131 147 9.5E-22 T 22-04-2016 IPR000780 MCP methyltransferase, CheR-type GO:0008757 PP4_RS21270 321298b6f8cb053de07d509bb806f554 424 Gene3D G3DSA:1.25.40.10 319 418 2.8E-15 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS21270 321298b6f8cb053de07d509bb806f554 424 Pfam PF01739 CheR methyltransferase, SAM binding domain 67 240 2.4E-35 T 22-04-2016 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal PP4_RS26405 7cb3521b5b7f7770f553e41879e083e2 290 TIGRFAM TIGR02140 permease_CysW: sulfate ABC transporter, permease protein CysW 23 280 6.6E-121 T 22-04-2016 IPR011866 Sulphate ABC transporter, permease protein CysW GO:0008272|GO:0015116|GO:0016021 PP4_RS26405 7cb3521b5b7f7770f553e41879e083e2 290 SUPERFAMILY SSF161098 23 275 2.09E-54 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS26405 7cb3521b5b7f7770f553e41879e083e2 290 PANTHER PTHR30406:SF1 2 287 1.2E-157 T 22-04-2016 PP4_RS26405 7cb3521b5b7f7770f553e41879e083e2 290 Gene3D G3DSA:1.10.3720.10 23 282 1.0E-53 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS26405 7cb3521b5b7f7770f553e41879e083e2 290 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 22 278 3.8E-98 T 22-04-2016 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 PP4_RS26405 7cb3521b5b7f7770f553e41879e083e2 290 PANTHER PTHR30406 2 287 1.2E-157 T 22-04-2016 PP4_RS26405 7cb3521b5b7f7770f553e41879e083e2 290 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 279 9.5E-17 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS05035 dcd407d78426c6638b4627250b11f3a1 318 TIGRFAM TIGR00452 TIGR00452: tRNA (mo5U34)-methyltransferase 9 317 7.9E-138 T 22-04-2016 IPR010017 tRNA (mo5U34)-methyltransferase GO:0002098|GO:0016300 PP4_RS05035 dcd407d78426c6638b4627250b11f3a1 318 Hamap MF_01590 tRNA (mo5U34)-methyltransferase [cmoB]. 12 318 52.668 T 22-04-2016 IPR010017 tRNA (mo5U34)-methyltransferase GO:0002098|GO:0016300 PP4_RS05035 dcd407d78426c6638b4627250b11f3a1 318 PANTHER PTHR10108 73 318 3.4E-99 T 22-04-2016 PP4_RS05035 dcd407d78426c6638b4627250b11f3a1 318 Gene3D G3DSA:3.40.50.150 117 308 1.6E-23 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS05035 dcd407d78426c6638b4627250b11f3a1 318 Pfam PF08003 Protein of unknown function (DUF1698) 8 318 1.1E-142 T 22-04-2016 IPR027555 tRNA (mo5U34)-methyltransferase-like PP4_RS05035 dcd407d78426c6638b4627250b11f3a1 318 PANTHER PTHR10108:SF847 73 318 3.4E-99 T 22-04-2016 PP4_RS05035 dcd407d78426c6638b4627250b11f3a1 318 SUPERFAMILY SSF53335 88 317 2.5E-30 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS04450 56a8aa43ac0f56055d4acd087614ccea 227 Gene3D G3DSA:3.40.50.2300 1 124 4.9E-42 T 22-04-2016 PP4_RS04450 56a8aa43ac0f56055d4acd087614ccea 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 149 220 1.6E-17 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS04450 56a8aa43ac0f56055d4acd087614ccea 227 Gene3D G3DSA:1.10.10.10 125 222 5.4E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS04450 56a8aa43ac0f56055d4acd087614ccea 227 PANTHER PTHR26402 1 222 1.5E-118 T 22-04-2016 PP4_RS04450 56a8aa43ac0f56055d4acd087614ccea 227 SUPERFAMILY SSF52172 1 177 1.32E-43 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS04450 56a8aa43ac0f56055d4acd087614ccea 227 SMART SM00862 146 220 2.4E-18 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS04450 56a8aa43ac0f56055d4acd087614ccea 227 PANTHER PTHR26402:SF552 1 222 1.5E-118 T 22-04-2016 PP4_RS04450 56a8aa43ac0f56055d4acd087614ccea 227 SMART SM00448 1 113 4.6E-46 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS04450 56a8aa43ac0f56055d4acd087614ccea 227 Pfam PF00072 Response regulator receiver domain 3 114 5.4E-30 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS18510 42c714aa1e7270dc9b8db11c5c50dccf 268 PANTHER PTHR10204:SF46 1 230 2.3E-81 T 22-04-2016 PP4_RS18510 42c714aa1e7270dc9b8db11c5c50dccf 268 Gene3D G3DSA:3.40.50.360 2 226 3.6E-65 T 22-04-2016 IPR029039 Flavoprotein-like domain PP4_RS18510 42c714aa1e7270dc9b8db11c5c50dccf 268 PANTHER PTHR10204 1 230 2.3E-81 T 22-04-2016 PP4_RS18510 42c714aa1e7270dc9b8db11c5c50dccf 268 Pfam PF02525 Flavodoxin-like fold 2 208 1.1E-52 T 22-04-2016 IPR003680 Flavodoxin-like fold PP4_RS18510 42c714aa1e7270dc9b8db11c5c50dccf 268 SUPERFAMILY SSF52218 2 228 2.67E-63 T 22-04-2016 IPR029039 Flavoprotein-like domain PP4_RS04660 e31c4d7183e0b659445c466a5b5bf5ef 330 TIGRFAM TIGR00374 TIGR00374: TIGR00374 family protein 10 316 1.5E-28 T 22-04-2016 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD PP4_RS04660 e31c4d7183e0b659445c466a5b5bf5ef 330 PANTHER PTHR37693 1 326 5.6E-58 T 22-04-2016 PP4_RS04660 e31c4d7183e0b659445c466a5b5bf5ef 330 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 6 309 2.7E-52 T 22-04-2016 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD PP4_RS04660 e31c4d7183e0b659445c466a5b5bf5ef 330 PANTHER PTHR37693:SF1 1 326 5.6E-58 T 22-04-2016 PP4_RS04725 20fcac2acfd9cd2dd8a2ec3e4d8fe2c2 131 Pfam PF02627 Carboxymuconolactone decarboxylase family 36 118 2.6E-24 T 22-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 PP4_RS04725 20fcac2acfd9cd2dd8a2ec3e4d8fe2c2 131 Gene3D G3DSA:1.20.1290.10 4 127 2.2E-28 T 22-04-2016 IPR029032 AhpD-like PP4_RS04725 20fcac2acfd9cd2dd8a2ec3e4d8fe2c2 131 PANTHER PTHR33570 1 129 2.4E-67 T 22-04-2016 PP4_RS04725 20fcac2acfd9cd2dd8a2ec3e4d8fe2c2 131 PANTHER PTHR33570:SF2 1 129 2.4E-67 T 22-04-2016 PP4_RS04725 20fcac2acfd9cd2dd8a2ec3e4d8fe2c2 131 SUPERFAMILY SSF69118 4 127 1.97E-39 T 22-04-2016 IPR029032 AhpD-like PP4_RS04725 20fcac2acfd9cd2dd8a2ec3e4d8fe2c2 131 TIGRFAM TIGR02425 decarb_PcaC: 4-carboxymuconolactone decarboxylase 3 124 9.2E-61 T 22-04-2016 IPR012788 4-carboxymuconolactone decarboxylase KEGG: 00362+4.1.1.44|UniPathway: UPA00157 PP4_RS03115 3d84914f4557e7985f985ef6492028a6 990 Pfam PF00593 TonB dependent receptor 708 987 2.7E-27 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS03115 3d84914f4557e7985f985ef6492028a6 990 SUPERFAMILY SSF56935 334 604 2.66E-81 T 22-04-2016 PP4_RS03115 3d84914f4557e7985f985ef6492028a6 990 SUPERFAMILY SSF56935 878 990 2.66E-81 T 22-04-2016 PP4_RS03115 3d84914f4557e7985f985ef6492028a6 990 SUPERFAMILY SSF56935 701 846 2.66E-81 T 22-04-2016 PP4_RS03115 3d84914f4557e7985f985ef6492028a6 990 SUPERFAMILY SSF56935 166 302 2.66E-81 T 22-04-2016 PP4_RS03115 3d84914f4557e7985f985ef6492028a6 990 Pfam PF07715 TonB-dependent Receptor Plug Domain 176 280 2.9E-16 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS03115 3d84914f4557e7985f985ef6492028a6 990 Gene3D G3DSA:2.170.130.10 174 284 6.7E-26 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS03115 3d84914f4557e7985f985ef6492028a6 990 PANTHER PTHR30442 32 893 1.3E-153 T 22-04-2016 PP4_RS03115 3d84914f4557e7985f985ef6492028a6 990 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 973 990 - T 22-04-2016 IPR010917 TonB-dependent receptor, conserved site PP4_RS03115 3d84914f4557e7985f985ef6492028a6 990 SMART SM00965 96 147 6.2E-12 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS03115 3d84914f4557e7985f985ef6492028a6 990 Gene3D G3DSA:2.40.170.20 285 307 2.3E-79 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS03115 3d84914f4557e7985f985ef6492028a6 990 Gene3D G3DSA:2.40.170.20 343 604 2.3E-79 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS03115 3d84914f4557e7985f985ef6492028a6 990 Gene3D G3DSA:2.40.170.20 701 990 2.3E-79 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS23645 c256a47423f5d264d8f48849e7d9c8b8 701 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 242 321 1.5E-21 T 22-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 PP4_RS23645 c256a47423f5d264d8f48849e7d9c8b8 701 Pfam PF03725 3' exoribonuclease family, domain 2 147 211 2.2E-11 T 22-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 PP4_RS23645 c256a47423f5d264d8f48849e7d9c8b8 701 Pfam PF03725 3' exoribonuclease family, domain 2 460 529 2.0E-5 T 22-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 PP4_RS23645 c256a47423f5d264d8f48849e7d9c8b8 701 Gene3D G3DSA:1.10.10.400 240 313 8.2E-21 T 22-04-2016 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0000175|GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 PP4_RS23645 c256a47423f5d264d8f48849e7d9c8b8 701 Pfam PF01138 3' exoribonuclease family, domain 1 15 144 8.5E-20 T 22-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 PP4_RS23645 c256a47423f5d264d8f48849e7d9c8b8 701 Pfam PF01138 3' exoribonuclease family, domain 1 325 457 5.6E-23 T 22-04-2016 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: REACT_21257 PP4_RS23645 c256a47423f5d264d8f48849e7d9c8b8 701 Pfam PF00575 S1 RNA binding domain 620 691 2.3E-16 T 22-04-2016 IPR003029 S1 domain GO:0003676 PP4_RS23645 c256a47423f5d264d8f48849e7d9c8b8 701 SUPERFAMILY SSF55666 451 549 2.38E-28 T 22-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 PP4_RS23645 c256a47423f5d264d8f48849e7d9c8b8 701 Gene3D G3DSA:2.40.50.140 621 693 3.5E-24 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS23645 c256a47423f5d264d8f48849e7d9c8b8 701 SUPERFAMILY SSF54211 4 144 2.89E-47 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PP4_RS23645 c256a47423f5d264d8f48849e7d9c8b8 701 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 9 692 0.0 T 22-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 PP4_RS23645 c256a47423f5d264d8f48849e7d9c8b8 701 PANTHER PTHR11252 2 693 0.0 T 22-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 PP4_RS23645 c256a47423f5d264d8f48849e7d9c8b8 701 Pfam PF00013 KH domain 559 614 2.3E-13 T 22-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 PP4_RS23645 c256a47423f5d264d8f48849e7d9c8b8 701 SUPERFAMILY SSF55666 145 237 6.54E-27 T 22-04-2016 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: REACT_21257 PP4_RS23645 c256a47423f5d264d8f48849e7d9c8b8 701 SMART SM00322 553 618 7.0E-14 T 22-04-2016 IPR004087 K Homology domain GO:0003676 PP4_RS23645 c256a47423f5d264d8f48849e7d9c8b8 701 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 2 694 30.162 T 22-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 PP4_RS23645 c256a47423f5d264d8f48849e7d9c8b8 701 Gene3D G3DSA:3.30.1370.10 553 620 4.0E-24 T 22-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 PP4_RS23645 c256a47423f5d264d8f48849e7d9c8b8 701 Gene3D G3DSA:3.30.230.70 3 226 1.9E-79 T 22-04-2016 IPR027408 PNPase/RNase PH domain PP4_RS23645 c256a47423f5d264d8f48849e7d9c8b8 701 Gene3D G3DSA:3.30.230.70 314 543 1.8E-90 T 22-04-2016 IPR027408 PNPase/RNase PH domain PP4_RS23645 c256a47423f5d264d8f48849e7d9c8b8 701 SUPERFAMILY SSF54211 294 489 9.62E-51 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PP4_RS23645 c256a47423f5d264d8f48849e7d9c8b8 701 SUPERFAMILY SSF50249 621 696 1.94E-20 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS23645 c256a47423f5d264d8f48849e7d9c8b8 701 SUPERFAMILY SSF54791 556 641 3.45E-23 T 22-04-2016 IPR004088 K Homology domain, type 1 GO:0003723 PP4_RS23645 c256a47423f5d264d8f48849e7d9c8b8 701 PANTHER PTHR11252:SF0 2 693 0.0 T 22-04-2016 PP4_RS23645 c256a47423f5d264d8f48849e7d9c8b8 701 SMART SM00316 621 691 6.9E-24 T 22-04-2016 IPR022967 RNA-binding domain, S1 PP4_RS23645 c256a47423f5d264d8f48849e7d9c8b8 701 PIRSF PIRSF005499 1 700 1.2E-287 T 22-04-2016 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 PP4_RS00890 6b24dc207c3863d09ee4273e92e37a2e 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 69 84 4.0E-9 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS00890 6b24dc207c3863d09ee4273e92e37a2e 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 52 68 4.0E-9 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS00890 6b24dc207c3863d09ee4273e92e37a2e 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 88 104 4.0E-9 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS00890 6b24dc207c3863d09ee4273e92e37a2e 150 Pfam PF13463 Winged helix DNA-binding domain 41 101 2.1E-7 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS00890 6b24dc207c3863d09ee4273e92e37a2e 150 PANTHER PTHR33164:SF16 1 136 1.2E-21 T 22-04-2016 PP4_RS00890 6b24dc207c3863d09ee4273e92e37a2e 150 PANTHER PTHR33164 1 136 1.2E-21 T 22-04-2016 PP4_RS00890 6b24dc207c3863d09ee4273e92e37a2e 150 SUPERFAMILY SSF46785 3 140 5.55E-27 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS00890 6b24dc207c3863d09ee4273e92e37a2e 150 Gene3D G3DSA:1.10.10.10 6 140 7.1E-29 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS00890 6b24dc207c3863d09ee4273e92e37a2e 150 SMART SM00347 27 128 2.7E-14 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS18275 ae5ec7f2d8bca87ec878b435932f94b4 960 PANTHER PTHR11615 27 75 1.6E-238 T 22-04-2016 PP4_RS18275 ae5ec7f2d8bca87ec878b435932f94b4 960 SUPERFAMILY SSF53706 243 778 1.44E-193 T 22-04-2016 PP4_RS18275 ae5ec7f2d8bca87ec878b435932f94b4 960 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 216 227 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PP4_RS18275 ae5ec7f2d8bca87ec878b435932f94b4 960 Gene3D G3DSA:2.20.25.90 254 298 8.5E-19 T 22-04-2016 PP4_RS18275 ae5ec7f2d8bca87ec878b435932f94b4 960 SMART SM00926 243 297 2.3E-16 T 22-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 PP4_RS18275 ae5ec7f2d8bca87ec878b435932f94b4 960 Pfam PF00384 Molybdopterin oxidoreductase 300 731 2.1E-72 T 22-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 PP4_RS18275 ae5ec7f2d8bca87ec878b435932f94b4 960 Gene3D G3DSA:3.30.70.20 158 221 2.7E-13 T 22-04-2016 PP4_RS18275 ae5ec7f2d8bca87ec878b435932f94b4 960 PANTHER PTHR11615:SF112 545 943 1.6E-238 T 22-04-2016 PP4_RS18275 ae5ec7f2d8bca87ec878b435932f94b4 960 PIRSF PIRSF036643 21 959 0.0 T 22-04-2016 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.2.1.2|KEGG: 00680+1.2.1.2|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696 PP4_RS18275 ae5ec7f2d8bca87ec878b435932f94b4 960 SUPERFAMILY SSF54862 99 236 1.17E-36 T 22-04-2016 PP4_RS18275 ae5ec7f2d8bca87ec878b435932f94b4 960 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 107 146 3.7E-17 T 22-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 PP4_RS18275 ae5ec7f2d8bca87ec878b435932f94b4 960 Gene3D G3DSA:3.40.228.10 378 569 3.6E-55 T 22-04-2016 PP4_RS18275 ae5ec7f2d8bca87ec878b435932f94b4 960 Gene3D G3DSA:2.40.40.20 773 926 1.2E-40 T 22-04-2016 PP4_RS18275 ae5ec7f2d8bca87ec878b435932f94b4 960 PANTHER PTHR11615:SF112 27 75 1.6E-238 T 22-04-2016 PP4_RS18275 ae5ec7f2d8bca87ec878b435932f94b4 960 PANTHER PTHR11615:SF112 241 500 1.6E-238 T 22-04-2016 PP4_RS18275 ae5ec7f2d8bca87ec878b435932f94b4 960 PANTHER PTHR11615 241 500 1.6E-238 T 22-04-2016 PP4_RS18275 ae5ec7f2d8bca87ec878b435932f94b4 960 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 244 295 5.4E-15 T 22-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 PP4_RS18275 ae5ec7f2d8bca87ec878b435932f94b4 960 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 173 184 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PP4_RS18275 ae5ec7f2d8bca87ec878b435932f94b4 960 Pfam PF01568 Molydopterin dinucleotide binding domain 815 919 1.3E-27 T 22-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 PP4_RS18275 ae5ec7f2d8bca87ec878b435932f94b4 960 Gene3D G3DSA:3.40.50.740 300 377 6.4E-89 T 22-04-2016 PP4_RS18275 ae5ec7f2d8bca87ec878b435932f94b4 960 Gene3D G3DSA:3.40.50.740 570 772 6.4E-89 T 22-04-2016 PP4_RS18275 ae5ec7f2d8bca87ec878b435932f94b4 960 SUPERFAMILY SSF54292 26 98 4.85E-18 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS18275 ae5ec7f2d8bca87ec878b435932f94b4 960 SUPERFAMILY SSF50692 783 925 1.22E-40 T 22-04-2016 IPR009010 Aspartate decarboxylase-like domain PP4_RS18275 ae5ec7f2d8bca87ec878b435932f94b4 960 ProSitePatterns PS00932 Prokaryotic molybdopterin oxidoreductases signature 3. 853 880 - T 22-04-2016 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site GO:0009055|GO:0016491|GO:0055114 PP4_RS18275 ae5ec7f2d8bca87ec878b435932f94b4 960 Gene3D G3DSA:3.10.20.30 20 76 2.3E-6 T 22-04-2016 IPR012675 Beta-grasp domain PP4_RS18275 ae5ec7f2d8bca87ec878b435932f94b4 960 Pfam PF00037 4Fe-4S binding domain 214 230 2.9E-5 T 22-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PP4_RS18275 ae5ec7f2d8bca87ec878b435932f94b4 960 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 25 100 5.0E-22 T 22-04-2016 PP4_RS18275 ae5ec7f2d8bca87ec878b435932f94b4 960 SMART SM00929 107 147 7.1E-19 T 22-04-2016 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 PP4_RS18275 ae5ec7f2d8bca87ec878b435932f94b4 960 Gene3D G3DSA:3.30.70.20 222 253 2.6E-4 T 22-04-2016 PP4_RS18275 ae5ec7f2d8bca87ec878b435932f94b4 960 TIGRFAM TIGR01591 Fdh-alpha: formate dehydrogenase, alpha subunit 248 923 7.6E-279 T 22-04-2016 IPR006478 Formate dehydrogenase, alpha subunit GO:0008863|GO:0015942|GO:0055114 KEGG: 00630+1.2.1.2|KEGG: 00680+1.2.1.2|MetaCyc: PWY-1881|MetaCyc: PWY-5497|MetaCyc: PWY-6696 PP4_RS18275 ae5ec7f2d8bca87ec878b435932f94b4 960 PANTHER PTHR11615 545 943 1.6E-238 T 22-04-2016 PP4_RS01840 a05e899a347b06b429f0a06503f57c99 226 Pfam PF00072 Response regulator receiver domain 4 112 7.8E-24 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS01840 a05e899a347b06b429f0a06503f57c99 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 220 1.4E-21 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS01840 a05e899a347b06b429f0a06503f57c99 226 SUPERFAMILY SSF52172 1 172 2.28E-37 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS01840 a05e899a347b06b429f0a06503f57c99 226 Gene3D G3DSA:3.40.50.2300 2 119 8.6E-35 T 22-04-2016 PP4_RS01840 a05e899a347b06b429f0a06503f57c99 226 PANTHER PTHR26402:SF573 2 220 2.8E-127 T 22-04-2016 PP4_RS01840 a05e899a347b06b429f0a06503f57c99 226 Gene3D G3DSA:1.10.10.10 129 223 3.8E-26 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS01840 a05e899a347b06b429f0a06503f57c99 226 PANTHER PTHR26402 2 220 2.8E-127 T 22-04-2016 PP4_RS01840 a05e899a347b06b429f0a06503f57c99 226 SMART SM00448 2 112 5.7E-39 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS01840 a05e899a347b06b429f0a06503f57c99 226 SMART SM00862 145 221 1.4E-20 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS12175 19264914492d51ebe1a6cf84b18efca6 391 Gene3D G3DSA:2.40.50.100 173 208 3.4E-23 T 22-04-2016 PP4_RS12175 19264914492d51ebe1a6cf84b18efca6 391 Gene3D G3DSA:2.40.50.100 65 98 3.4E-23 T 22-04-2016 PP4_RS12175 19264914492d51ebe1a6cf84b18efca6 391 PANTHER PTHR30158 1 380 3.1E-148 T 22-04-2016 PP4_RS12175 19264914492d51ebe1a6cf84b18efca6 391 SUPERFAMILY SSF111369 53 300 1.11E-79 T 22-04-2016 PP4_RS12175 19264914492d51ebe1a6cf84b18efca6 391 PANTHER PTHR30158:SF3 1 380 3.1E-148 T 22-04-2016 PP4_RS12175 19264914492d51ebe1a6cf84b18efca6 391 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 64 294 4.8E-11 T 22-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PP4_RS12175 19264914492d51ebe1a6cf84b18efca6 391 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 40 376 4.4E-81 T 22-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 PP4_RS21835 a10b2783a16e2d97850a8b39d134bd22 109 Pfam PF01541 GIY-YIG catalytic domain 13 82 9.0E-12 T 22-04-2016 IPR000305 GIY-YIG nuclease superfamily PP4_RS21835 a10b2783a16e2d97850a8b39d134bd22 109 PANTHER PTHR34477 6 88 2.7E-32 T 22-04-2016 PP4_RS21835 a10b2783a16e2d97850a8b39d134bd22 109 SUPERFAMILY SSF82771 12 82 2.35E-11 T 22-04-2016 IPR000305 GIY-YIG nuclease superfamily PP4_RS21835 a10b2783a16e2d97850a8b39d134bd22 109 PANTHER PTHR34477:SF1 6 88 2.7E-32 T 22-04-2016 PP4_RS06875 927ec2e92e022ce57c6ecfafd57996d7 411 Pfam PF13840 ACT domain 339 398 4.0E-15 T 22-04-2016 IPR027795 GATS-like ACT domain PP4_RS06875 927ec2e92e022ce57c6ecfafd57996d7 411 SUPERFAMILY SSF55021 248 326 2.18E-17 T 22-04-2016 PP4_RS06875 927ec2e92e022ce57c6ecfafd57996d7 411 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 63 402 1.9E-120 T 22-04-2016 IPR001341 Aspartate kinase domain GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 PP4_RS06875 927ec2e92e022ce57c6ecfafd57996d7 411 PANTHER PTHR21499 1 411 3.6E-177 T 22-04-2016 PP4_RS06875 927ec2e92e022ce57c6ecfafd57996d7 411 SUPERFAMILY SSF55021 329 404 2.84E-25 T 22-04-2016 PP4_RS06875 927ec2e92e022ce57c6ecfafd57996d7 411 TIGRFAM TIGR00656 asp_kin_monofn: aspartate kinase, monofunctional class 1 403 5.3E-134 T 22-04-2016 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 PP4_RS06875 927ec2e92e022ce57c6ecfafd57996d7 411 PIRSF PIRSF000726 57 410 1.5E-150 T 22-04-2016 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 PP4_RS06875 927ec2e92e022ce57c6ecfafd57996d7 411 SUPERFAMILY SSF53633 4 241 1.44E-74 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PP4_RS06875 927ec2e92e022ce57c6ecfafd57996d7 411 Pfam PF01842 ACT domain 267 323 2.4E-9 T 22-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 PP4_RS06875 927ec2e92e022ce57c6ecfafd57996d7 411 Gene3D G3DSA:3.40.1160.10 1 246 3.5E-76 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PP4_RS06875 927ec2e92e022ce57c6ecfafd57996d7 411 PANTHER PTHR21499:SF27 1 411 3.6E-177 T 22-04-2016 PP4_RS06875 927ec2e92e022ce57c6ecfafd57996d7 411 Pfam PF00696 Amino acid kinase family 3 229 1.2E-49 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PP4_RS06875 927ec2e92e022ce57c6ecfafd57996d7 411 ProSitePatterns PS00324 Aspartokinase signature. 5 13 - T 22-04-2016 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 PP4_RS26655 2c06ebf39f33df5fee9abaa6ecc15aa4 500 SUPERFAMILY SSF53067 137 311 2.59E-44 T 22-04-2016 PP4_RS26655 2c06ebf39f33df5fee9abaa6ecc15aa4 500 SUPERFAMILY SSF53067 11 131 3.72E-38 T 22-04-2016 PP4_RS26655 2c06ebf39f33df5fee9abaa6ecc15aa4 500 PIRSF PIRSF001267 3 500 6.5E-195 T 22-04-2016 IPR030673 Pyrophosphatase, GppA/Ppx-type KEGG: 00230+3.6.1.40|UniPathway: UPA00908 PP4_RS26655 2c06ebf39f33df5fee9abaa6ecc15aa4 500 PANTHER PTHR30005 3 500 8.6E-202 T 22-04-2016 PP4_RS26655 2c06ebf39f33df5fee9abaa6ecc15aa4 500 Pfam PF02541 Ppx/GppA phosphatase family 26 309 3.3E-75 T 22-04-2016 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40|UniPathway: UPA00908 PP4_RS26655 2c06ebf39f33df5fee9abaa6ecc15aa4 500 Gene3D G3DSA:3.30.420.150 135 311 8.6E-52 T 22-04-2016 PP4_RS26655 2c06ebf39f33df5fee9abaa6ecc15aa4 500 TIGRFAM TIGR03706 exo_poly_only: exopolyphosphatase 12 306 1.2E-100 T 22-04-2016 IPR022371 Exopolyphosphatase GO:0004309|GO:0006793 PP4_RS26655 2c06ebf39f33df5fee9abaa6ecc15aa4 500 SUPERFAMILY SSF109604 313 495 1.57E-52 T 22-04-2016 PP4_RS26655 2c06ebf39f33df5fee9abaa6ecc15aa4 500 PANTHER PTHR30005:SF4 3 500 8.6E-202 T 22-04-2016 PP4_RS26655 2c06ebf39f33df5fee9abaa6ecc15aa4 500 Gene3D G3DSA:3.30.420.40 6 132 4.1E-47 T 22-04-2016 PP4_RS20900 c9eee29ff602cb86e41eede540424b24 224 PANTHER PTHR11579 8 220 3.5E-90 T 22-04-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 PP4_RS20900 c9eee29ff602cb86e41eede540424b24 224 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 19 219 9.8E-65 T 22-04-2016 PP4_RS20900 c9eee29ff602cb86e41eede540424b24 224 Hamap MF_00090 Protein-L-isoaspartate O-methyltransferase [pcm]. 14 224 39.464 T 22-04-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 PP4_RS20900 c9eee29ff602cb86e41eede540424b24 224 SUPERFAMILY SSF53335 15 220 1.37E-46 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS20900 c9eee29ff602cb86e41eede540424b24 224 Gene3D G3DSA:3.40.50.150 28 220 2.5E-60 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS20900 c9eee29ff602cb86e41eede540424b24 224 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 14 221 7.1E-69 T 22-04-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 PP4_RS20900 c9eee29ff602cb86e41eede540424b24 224 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 144 159 - T 22-04-2016 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 PP4_RS00680 d0b780d8fc81d6cdbdd357c87d554b19 468 Gene3D G3DSA:3.30.830.10 20 240 5.3E-34 T 22-04-2016 IPR011237 Peptidase M16 domain GO:0046872 PP4_RS00680 d0b780d8fc81d6cdbdd357c87d554b19 468 SUPERFAMILY SSF63411 23 234 1.66E-29 T 22-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 PP4_RS00680 d0b780d8fc81d6cdbdd357c87d554b19 468 PANTHER PTHR11851 20 433 4.6E-40 T 22-04-2016 PP4_RS00680 d0b780d8fc81d6cdbdd357c87d554b19 468 Pfam PF00675 Insulinase (Peptidase family M16) 37 148 8.9E-12 T 22-04-2016 IPR011765 Peptidase M16, N-terminal PP4_RS00680 d0b780d8fc81d6cdbdd357c87d554b19 468 SUPERFAMILY SSF63411 269 424 8.17E-18 T 22-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 PP4_RS00680 d0b780d8fc81d6cdbdd357c87d554b19 468 PANTHER PTHR11851:SF124 20 433 4.6E-40 T 22-04-2016 PP4_RS00680 d0b780d8fc81d6cdbdd357c87d554b19 468 Gene3D G3DSA:3.30.830.10 294 419 1.3E-11 T 22-04-2016 IPR011237 Peptidase M16 domain GO:0046872 PP4_RS00680 d0b780d8fc81d6cdbdd357c87d554b19 468 Pfam PF05193 Peptidase M16 inactive domain 190 362 5.4E-20 T 22-04-2016 IPR007863 Peptidase M16, C-terminal PP4_RS00110 0681d9f8ba9faf0243815f5b7d67e325 472 TIGRFAM TIGR01386 cztS_silS_copS: heavy metal sensor kinase 3 460 4.0E-134 T 22-04-2016 IPR006290 Heavy metal sensor kinase GO:0000160|GO:0004673|GO:0016020 PP4_RS00110 0681d9f8ba9faf0243815f5b7d67e325 472 SMART SM00388 241 307 2.3E-13 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS00110 0681d9f8ba9faf0243815f5b7d67e325 472 PANTHER PTHR24423 4 16 3.1E-87 T 22-04-2016 PP4_RS00110 0681d9f8ba9faf0243815f5b7d67e325 472 PANTHER PTHR24423 181 465 3.1E-87 T 22-04-2016 PP4_RS00110 0681d9f8ba9faf0243815f5b7d67e325 472 SMART SM00387 351 463 1.5E-32 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS00110 0681d9f8ba9faf0243815f5b7d67e325 472 Pfam PF00672 HAMP domain 169 236 2.2E-8 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS00110 0681d9f8ba9faf0243815f5b7d67e325 472 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 356 462 1.9E-20 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS00110 0681d9f8ba9faf0243815f5b7d67e325 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 423 441 2.8E-10 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS00110 0681d9f8ba9faf0243815f5b7d67e325 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 388 402 2.8E-10 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS00110 0681d9f8ba9faf0243815f5b7d67e325 472 PRINTS PR00344 Bacterial sensor protein C-terminal signature 406 416 2.8E-10 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS00110 0681d9f8ba9faf0243815f5b7d67e325 472 Gene3D G3DSA:3.30.565.10 311 465 4.0E-37 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS00110 0681d9f8ba9faf0243815f5b7d67e325 472 Gene3D G3DSA:1.10.287.130 231 302 5.9E-10 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS00110 0681d9f8ba9faf0243815f5b7d67e325 472 SMART SM00304 187 240 1.0E-4 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS00110 0681d9f8ba9faf0243815f5b7d67e325 472 SUPERFAMILY SSF47384 224 305 1.02E-14 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS00110 0681d9f8ba9faf0243815f5b7d67e325 472 PANTHER PTHR24423:SF354 4 16 3.1E-87 T 22-04-2016 PP4_RS00110 0681d9f8ba9faf0243815f5b7d67e325 472 PANTHER PTHR24423:SF354 181 465 3.1E-87 T 22-04-2016 PP4_RS00110 0681d9f8ba9faf0243815f5b7d67e325 472 Pfam PF00512 His Kinase A (phospho-acceptor) domain 242 303 5.9E-12 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS00110 0681d9f8ba9faf0243815f5b7d67e325 472 SUPERFAMILY SSF55874 297 461 5.24E-36 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS10890 3f60213fa7cf6f68c4677616dc14ec0d 304 PANTHER PTHR30537 1 296 2.8E-103 T 22-04-2016 PP4_RS10890 3f60213fa7cf6f68c4677616dc14ec0d 304 Gene3D G3DSA:3.40.190.10 92 179 3.1E-23 T 22-04-2016 PP4_RS10890 3f60213fa7cf6f68c4677616dc14ec0d 304 PANTHER PTHR30537:SF5 1 296 2.8E-103 T 22-04-2016 PP4_RS10890 3f60213fa7cf6f68c4677616dc14ec0d 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 62 1.3E-16 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS10890 3f60213fa7cf6f68c4677616dc14ec0d 304 Gene3D G3DSA:3.40.190.10 180 259 1.3E-5 T 22-04-2016 PP4_RS10890 3f60213fa7cf6f68c4677616dc14ec0d 304 SUPERFAMILY SSF46785 6 111 3.56E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS10890 3f60213fa7cf6f68c4677616dc14ec0d 304 Gene3D G3DSA:1.10.10.10 5 85 6.4E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS10890 3f60213fa7cf6f68c4677616dc14ec0d 304 Pfam PF03466 LysR substrate binding domain 89 293 5.3E-44 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS10890 3f60213fa7cf6f68c4677616dc14ec0d 304 SUPERFAMILY SSF53850 89 298 2.59E-48 T 22-04-2016 PP4_RS22695 a2cf36df13fccf5573aed8b88c6397b5 214 Gene3D G3DSA:3.60.15.10 10 213 4.0E-50 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS22695 a2cf36df13fccf5573aed8b88c6397b5 214 PANTHER PTHR11935:SF8 8 213 9.3E-59 T 22-04-2016 PP4_RS22695 a2cf36df13fccf5573aed8b88c6397b5 214 PANTHER PTHR11935 8 213 9.3E-59 T 22-04-2016 PP4_RS22695 a2cf36df13fccf5573aed8b88c6397b5 214 SMART SM00849 19 196 2.0E-35 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS22695 a2cf36df13fccf5573aed8b88c6397b5 214 Pfam PF00753 Metallo-beta-lactamase superfamily 16 196 1.3E-30 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS22695 a2cf36df13fccf5573aed8b88c6397b5 214 SUPERFAMILY SSF56281 5 213 5.18E-52 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS22480 c218246230610e62513787e2105d0d01 295 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 57 79 - T 22-04-2016 IPR030470 UbiA prenyltransferase conserved site PP4_RS22480 c218246230610e62513787e2105d0d01 295 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 4 282 6.3E-94 T 22-04-2016 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 UniPathway: UPA00834 PP4_RS22480 c218246230610e62513787e2105d0d01 295 Pfam PF01040 UbiA prenyltransferase family 20 265 2.5E-56 T 22-04-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 PP4_RS22480 c218246230610e62513787e2105d0d01 295 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 2 284 17.339 T 22-04-2016 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 UniPathway: UPA00834 PP4_RS22480 c218246230610e62513787e2105d0d01 295 PANTHER PTHR11048:SF20 1 282 9.0E-128 T 22-04-2016 PP4_RS22480 c218246230610e62513787e2105d0d01 295 PANTHER PTHR11048 1 282 9.0E-128 T 22-04-2016 PP4_RS11170 67f9897b2a09780a18d380299a77b84b 582 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 37 531 4.6E-178 T 22-04-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 PP4_RS11170 67f9897b2a09780a18d380299a77b84b 582 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 75 531 9.7E-162 T 22-04-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 PP4_RS11170 67f9897b2a09780a18d380299a77b84b 582 PANTHER PTHR30047:SF2 32 545 1.3E-216 T 22-04-2016 PP4_RS11170 67f9897b2a09780a18d380299a77b84b 582 PANTHER PTHR30047 32 545 1.3E-216 T 22-04-2016 PP4_RS11170 67f9897b2a09780a18d380299a77b84b 582 ProSitePatterns PS01303 BCCT family of transporters signature. 343 352 - T 22-04-2016 IPR018093 BCCT transporter, conserved site GO:0005215|GO:0006810|GO:0016020 PP4_RS14260 028c261cf4973d87e207c52af84fe2eb 497 Gene3D G3DSA:3.30.565.10 339 480 4.9E-33 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS14260 028c261cf4973d87e207c52af84fe2eb 497 Pfam PF00512 His Kinase A (phospho-acceptor) domain 272 328 1.2E-10 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS14260 028c261cf4973d87e207c52af84fe2eb 497 PANTHER PTHR24423 179 218 5.4E-46 T 22-04-2016 PP4_RS14260 028c261cf4973d87e207c52af84fe2eb 497 PANTHER PTHR24423 1 10 5.4E-46 T 22-04-2016 PP4_RS14260 028c261cf4973d87e207c52af84fe2eb 497 PANTHER PTHR24423 249 483 5.4E-46 T 22-04-2016 PP4_RS14260 028c261cf4973d87e207c52af84fe2eb 497 Gene3D G3DSA:1.10.287.130 272 328 1.2E-9 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS14260 028c261cf4973d87e207c52af84fe2eb 497 SUPERFAMILY SSF55874 335 480 9.82E-34 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS14260 028c261cf4973d87e207c52af84fe2eb 497 PRINTS PR00344 Bacterial sensor protein C-terminal signature 444 462 7.51E-11 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS14260 028c261cf4973d87e207c52af84fe2eb 497 PRINTS PR00344 Bacterial sensor protein C-terminal signature 415 429 7.51E-11 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS14260 028c261cf4973d87e207c52af84fe2eb 497 PRINTS PR00344 Bacterial sensor protein C-terminal signature 433 443 7.51E-11 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS14260 028c261cf4973d87e207c52af84fe2eb 497 SMART SM00387 377 484 9.6E-25 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS14260 028c261cf4973d87e207c52af84fe2eb 497 SMART SM00388 272 336 1.7E-8 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS14260 028c261cf4973d87e207c52af84fe2eb 497 SUPERFAMILY SSF47384 261 332 3.53E-11 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS14260 028c261cf4973d87e207c52af84fe2eb 497 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 380 480 2.7E-18 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS21360 1782ba8279eff83e10bb96efea10818d 434 SUPERFAMILY SSF55347 135 300 1.18E-52 T 22-04-2016 PP4_RS21360 1782ba8279eff83e10bb96efea10818d 434 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 181 203 - T 22-04-2016 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 PP4_RS21360 1782ba8279eff83e10bb96efea10818d 434 Gene3D G3DSA:3.30.360.10 147 296 5.0E-57 T 22-04-2016 PP4_RS21360 1782ba8279eff83e10bb96efea10818d 434 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 10 127 1.4E-23 T 22-04-2016 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 PP4_RS21360 1782ba8279eff83e10bb96efea10818d 434 PANTHER PTHR21499:SF2 4 367 1.5E-134 T 22-04-2016 PP4_RS21360 1782ba8279eff83e10bb96efea10818d 434 Pfam PF01842 ACT domain 352 415 1.6E-13 T 22-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 PP4_RS21360 1782ba8279eff83e10bb96efea10818d 434 SUPERFAMILY SSF51735 2 156 8.25E-36 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS21360 1782ba8279eff83e10bb96efea10818d 434 ProDom PD002844 SMALL SUBUNIT ACETOLACTATE SYNTHASE SYNTHASE TRANSFERASE ACID BIOSYNTHESIS III LYASE 354 422 0.001 T 22-04-2016 PP4_RS21360 1782ba8279eff83e10bb96efea10818d 434 PANTHER PTHR21499 4 367 1.5E-134 T 22-04-2016 PP4_RS21360 1782ba8279eff83e10bb96efea10818d 434 Gene3D G3DSA:3.40.50.720 2 146 5.3E-49 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS21360 1782ba8279eff83e10bb96efea10818d 434 Gene3D G3DSA:3.30.70.260 352 422 3.4E-14 T 22-04-2016 PP4_RS21360 1782ba8279eff83e10bb96efea10818d 434 SUPERFAMILY SSF55021 350 421 8.68E-15 T 22-04-2016 PP4_RS21360 1782ba8279eff83e10bb96efea10818d 434 Pfam PF00742 Homoserine dehydrogenase 135 313 8.3E-64 T 22-04-2016 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 PP4_RS21360 1782ba8279eff83e10bb96efea10818d 434 PIRSF PIRSF000098 1 433 6.6E-165 T 22-04-2016 IPR016204 Homoserine dehydrogenase GO:0004412|GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3|UniPathway: UPA00050|UniPathway: UPA00051 PP4_RS02290 369233dfbd7fe4d707b348d0322bc220 197 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 74 90 6.6E-6 T 22-04-2016 PP4_RS02290 369233dfbd7fe4d707b348d0322bc220 197 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 44 58 6.6E-6 T 22-04-2016 PP4_RS02290 369233dfbd7fe4d707b348d0322bc220 197 TIGRFAM TIGR00566 trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 1 191 7.4E-88 T 22-04-2016 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain GO:0008152 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 PP4_RS02290 369233dfbd7fe4d707b348d0322bc220 197 PANTHER PTHR11922:SF7 1 197 4.4E-100 T 22-04-2016 PP4_RS02290 369233dfbd7fe4d707b348d0322bc220 197 Gene3D G3DSA:3.40.50.880 2 193 3.0E-68 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS02290 369233dfbd7fe4d707b348d0322bc220 197 PRINTS PR00097 Anthranilate synthase component II signature 74 85 5.3E-37 T 22-04-2016 PP4_RS02290 369233dfbd7fe4d707b348d0322bc220 197 PRINTS PR00097 Anthranilate synthase component II signature 47 56 5.3E-37 T 22-04-2016 PP4_RS02290 369233dfbd7fe4d707b348d0322bc220 197 PRINTS PR00097 Anthranilate synthase component II signature 169 182 5.3E-37 T 22-04-2016 PP4_RS02290 369233dfbd7fe4d707b348d0322bc220 197 PRINTS PR00097 Anthranilate synthase component II signature 119 131 5.3E-37 T 22-04-2016 PP4_RS02290 369233dfbd7fe4d707b348d0322bc220 197 PRINTS PR00097 Anthranilate synthase component II signature 2 16 5.3E-37 T 22-04-2016 PP4_RS02290 369233dfbd7fe4d707b348d0322bc220 197 PRINTS PR00097 Anthranilate synthase component II signature 99 107 5.3E-37 T 22-04-2016 PP4_RS02290 369233dfbd7fe4d707b348d0322bc220 197 Pfam PF00117 Glutamine amidotransferase class-I 4 191 2.1E-56 T 22-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 PP4_RS02290 369233dfbd7fe4d707b348d0322bc220 197 PANTHER PTHR11922 1 197 4.4E-100 T 22-04-2016 PP4_RS02290 369233dfbd7fe4d707b348d0322bc220 197 PRINTS PR00096 Glutamine amidotransferase superfamily signature 74 85 1.3E-13 T 22-04-2016 PP4_RS02290 369233dfbd7fe4d707b348d0322bc220 197 PRINTS PR00096 Glutamine amidotransferase superfamily signature 169 182 1.3E-13 T 22-04-2016 PP4_RS02290 369233dfbd7fe4d707b348d0322bc220 197 PRINTS PR00096 Glutamine amidotransferase superfamily signature 47 56 1.3E-13 T 22-04-2016 PP4_RS02290 369233dfbd7fe4d707b348d0322bc220 197 SUPERFAMILY SSF52317 1 192 4.22E-56 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS11140 ca0e698c065c69d59131b6e8f4a77de1 313 Gene3D G3DSA:3.40.50.720 41 125 4.8E-21 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS11140 ca0e698c065c69d59131b6e8f4a77de1 313 SUPERFAMILY SSF51735 6 138 1.3E-31 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS11140 ca0e698c065c69d59131b6e8f4a77de1 313 SMART SM00859 5 106 8.4E-15 T 22-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 PP4_RS11140 ca0e698c065c69d59131b6e8f4a77de1 313 SUPERFAMILY SSF55347 117 289 9.29E-36 T 22-04-2016 PP4_RS11140 ca0e698c065c69d59131b6e8f4a77de1 313 PANTHER PTHR32338:SF9 1 307 1.7E-105 T 22-04-2016 PP4_RS11140 ca0e698c065c69d59131b6e8f4a77de1 313 PANTHER PTHR32338 1 307 1.7E-105 T 22-04-2016 PP4_RS11140 ca0e698c065c69d59131b6e8f4a77de1 313 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 45 103 1.2E-11 T 22-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 PP4_RS11140 ca0e698c065c69d59131b6e8f4a77de1 313 Gene3D G3DSA:3.30.360.10 126 289 3.4E-38 T 22-04-2016 PP4_RS11140 ca0e698c065c69d59131b6e8f4a77de1 313 ProSitePatterns PS01224 N-acetyl-gamma-glutamyl-phosphate reductase active site. 112 128 - T 22-04-2016 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site GO:0003942|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PP4_RS11140 ca0e698c065c69d59131b6e8f4a77de1 313 Hamap MF_01110 N-acetyl-gamma-glutamyl-phosphate reductase [argC]. 2 308 52.9 T 22-04-2016 IPR010136 N-acetyl-gamma-glutamyl-phosphate reductase, type 2 GO:0003942|GO:0005737|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PP4_RS11140 ca0e698c065c69d59131b6e8f4a77de1 313 TIGRFAM TIGR01851 argC_other: N-acetyl-gamma-glutamyl-phosphate reductase 4 307 3.0E-121 T 22-04-2016 IPR010136 N-acetyl-gamma-glutamyl-phosphate reductase, type 2 GO:0003942|GO:0005737|GO:0006526|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PP4_RS22795 0203583a48101b1782bfabdadaf30f3b 502 Pfam PF06039 Malate:quinone oxidoreductase (Mqo) 6 491 3.2E-229 T 22-04-2016 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254|UniPathway: UPA00223 PP4_RS22795 0203583a48101b1782bfabdadaf30f3b 502 Gene3D G3DSA:3.50.50.60 5 73 8.0E-23 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS22795 0203583a48101b1782bfabdadaf30f3b 502 Gene3D G3DSA:3.50.50.60 148 333 8.0E-23 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS22795 0203583a48101b1782bfabdadaf30f3b 502 Hamap MF_00212 Probable malate:quinone oxidoreductase [mqo]. 3 491 51.478 T 22-04-2016 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254|UniPathway: UPA00223 PP4_RS22795 0203583a48101b1782bfabdadaf30f3b 502 TIGRFAM TIGR01320 mal_quin_oxido: malate dehydrogenase (acceptor) 7 484 5.8E-241 T 22-04-2016 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254|UniPathway: UPA00223 PP4_RS22795 0203583a48101b1782bfabdadaf30f3b 502 PANTHER PTHR13847:SF214 1 445 2.6E-200 T 22-04-2016 PP4_RS22795 0203583a48101b1782bfabdadaf30f3b 502 PANTHER PTHR13847 1 445 2.6E-200 T 22-04-2016 PP4_RS22795 0203583a48101b1782bfabdadaf30f3b 502 SUPERFAMILY SSF51905 4 324 7.25E-24 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS16065 c5ccc81b3f90de677b6f3015863f4bc9 211 SUPERFAMILY SSF46689 8 81 9.23E-16 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS16065 c5ccc81b3f90de677b6f3015863f4bc9 211 Gene3D G3DSA:1.10.10.60 43 69 9.6E-9 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS16065 c5ccc81b3f90de677b6f3015863f4bc9 211 Pfam PF00440 Bacterial regulatory proteins, tetR family 14 59 1.2E-12 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS16065 c5ccc81b3f90de677b6f3015863f4bc9 211 Gene3D G3DSA:1.10.357.10 70 201 6.4E-38 T 22-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PP4_RS16065 c5ccc81b3f90de677b6f3015863f4bc9 211 SUPERFAMILY SSF48498 79 201 2.52E-32 T 22-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal PP4_RS16065 c5ccc81b3f90de677b6f3015863f4bc9 211 Pfam PF08362 YcdC-like protein, C-terminal region 62 202 3.0E-38 T 22-04-2016 IPR013573 Transcription regulator YcdC, C-terminal GO:0045892 PP4_RS16065 c5ccc81b3f90de677b6f3015863f4bc9 211 PANTHER PTHR30055:SF53 6 164 1.2E-44 T 22-04-2016 PP4_RS16065 c5ccc81b3f90de677b6f3015863f4bc9 211 Gene3D G3DSA:1.10.10.60 7 42 1.1E-11 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS16065 c5ccc81b3f90de677b6f3015863f4bc9 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 14 27 1.1E-9 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS16065 c5ccc81b3f90de677b6f3015863f4bc9 211 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 35 58 1.1E-9 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS16065 c5ccc81b3f90de677b6f3015863f4bc9 211 PANTHER PTHR30055 6 164 1.2E-44 T 22-04-2016 PP4_RS02515 b40151a4f5ff1beb52b3ed8f5ef32995 99 Pfam PF00276 Ribosomal protein L23 8 94 2.4E-31 T 22-04-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 PP4_RS02515 b40151a4f5ff1beb52b3ed8f5ef32995 99 SUPERFAMILY SSF54189 1 91 6.83E-31 T 22-04-2016 IPR012678 Ribosomal protein L23/L15e core domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02515 b40151a4f5ff1beb52b3ed8f5ef32995 99 Gene3D G3DSA:3.30.70.330 5 96 3.8E-33 T 22-04-2016 IPR012677 Nucleotide-binding alpha-beta plait domain GO:0000166 PP4_RS02515 b40151a4f5ff1beb52b3ed8f5ef32995 99 PANTHER PTHR11620 7 94 4.3E-29 T 22-04-2016 PP4_RS02515 b40151a4f5ff1beb52b3ed8f5ef32995 99 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 7 97 22.322 T 22-04-2016 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 PP4_RS21690 bbc61cad78be658807ef1c20311d6f04 333 SUPERFAMILY SSF55347 154 313 3.13E-66 T 22-04-2016 PP4_RS21690 bbc61cad78be658807ef1c20311d6f04 333 SMART SM00846 3 154 7.2E-89 T 22-04-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 PP4_RS21690 bbc61cad78be658807ef1c20311d6f04 333 PANTHER PTHR10836:SF50 1 324 1.1E-188 T 22-04-2016 PP4_RS21690 bbc61cad78be658807ef1c20311d6f04 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 148 166 9.3E-35 T 22-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 PP4_RS21690 bbc61cad78be658807ef1c20311d6f04 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 112 125 9.3E-35 T 22-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 PP4_RS21690 bbc61cad78be658807ef1c20311d6f04 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 175 191 9.3E-35 T 22-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 PP4_RS21690 bbc61cad78be658807ef1c20311d6f04 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 269 284 9.3E-35 T 22-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 PP4_RS21690 bbc61cad78be658807ef1c20311d6f04 333 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 231 248 9.3E-35 T 22-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 PP4_RS21690 bbc61cad78be658807ef1c20311d6f04 333 Gene3D G3DSA:3.40.50.720 1 162 5.3E-72 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS21690 bbc61cad78be658807ef1c20311d6f04 333 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 152 159 - T 22-04-2016 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: REACT_474 PP4_RS21690 bbc61cad78be658807ef1c20311d6f04 333 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 4 324 1.0E-126 T 22-04-2016 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS21690 bbc61cad78be658807ef1c20311d6f04 333 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 159 312 1.0E-58 T 22-04-2016 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: REACT_474 PP4_RS21690 bbc61cad78be658807ef1c20311d6f04 333 PIRSF PIRSF000149 1 333 4.0E-132 T 22-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 PP4_RS21690 bbc61cad78be658807ef1c20311d6f04 333 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 4 154 7.8E-57 T 22-04-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 PP4_RS21690 bbc61cad78be658807ef1c20311d6f04 333 PANTHER PTHR10836 1 324 1.1E-188 T 22-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 PP4_RS21690 bbc61cad78be658807ef1c20311d6f04 333 SUPERFAMILY SSF51735 1 180 2.78E-61 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS21690 bbc61cad78be658807ef1c20311d6f04 333 Gene3D G3DSA:3.30.360.10 163 314 4.8E-69 T 22-04-2016 PP4_RS16610 5251a008d05df70e589b813465cbefe2 161 PANTHER PTHR11080 1 157 9.9E-22 T 22-04-2016 PP4_RS16610 5251a008d05df70e589b813465cbefe2 161 Pfam PF00857 Isochorismatase family 29 152 5.1E-13 T 22-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PP4_RS16610 5251a008d05df70e589b813465cbefe2 161 SUPERFAMILY SSF52499 1 159 1.2E-22 T 22-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PP4_RS16610 5251a008d05df70e589b813465cbefe2 161 Gene3D G3DSA:3.40.50.850 3 159 8.4E-20 T 22-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PP4_RS16610 5251a008d05df70e589b813465cbefe2 161 PANTHER PTHR11080:SF17 1 157 9.9E-22 T 22-04-2016 PP4_RS11190 3b94c7ae653f6e0e097029dc3f29b294 262 PANTHER PTHR35936 1 261 5.0E-19 T 22-04-2016 PP4_RS11190 3b94c7ae653f6e0e097029dc3f29b294 262 SUPERFAMILY SSF53850 34 241 3.84E-41 T 22-04-2016 PP4_RS11190 3b94c7ae653f6e0e097029dc3f29b294 262 Gene3D G3DSA:3.40.190.10 110 209 4.6E-9 T 22-04-2016 PP4_RS11190 3b94c7ae653f6e0e097029dc3f29b294 262 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 36 239 3.3E-27 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS11190 3b94c7ae653f6e0e097029dc3f29b294 262 SMART SM00062 30 260 4.4E-8 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS11190 3b94c7ae653f6e0e097029dc3f29b294 262 Gene3D G3DSA:3.40.190.10 35 109 1.0E-16 T 22-04-2016 PP4_RS11190 3b94c7ae653f6e0e097029dc3f29b294 262 Gene3D G3DSA:3.40.190.10 216 239 1.0E-16 T 22-04-2016 PP4_RS01590 f740b3e91bb9e0af279ebe258d7f6b43 90 SUPERFAMILY SSF111148 1 89 1.7E-40 T 22-04-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 PP4_RS01590 f740b3e91bb9e0af279ebe258d7f6b43 90 PANTHER PTHR36965 2 90 1.6E-47 T 22-04-2016 PP4_RS01590 f740b3e91bb9e0af279ebe258d7f6b43 90 Hamap MF_00686 Probable Fe(2+)-trafficking protein [yggX]. 1 88 27.507 T 22-04-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 PP4_RS01590 f740b3e91bb9e0af279ebe258d7f6b43 90 Gene3D G3DSA:1.10.3880.10 1 89 8.7E-42 T 22-04-2016 PP4_RS01590 f740b3e91bb9e0af279ebe258d7f6b43 90 Pfam PF04362 Bacterial Fe(2+) trafficking 1 88 1.2E-41 T 22-04-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 PP4_RS01590 f740b3e91bb9e0af279ebe258d7f6b43 90 PIRSF PIRSF029827 1 90 2.4E-41 T 22-04-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 PP4_RS01590 f740b3e91bb9e0af279ebe258d7f6b43 90 ProDom PD029191 TRAFFICKING IRON PROBABLE FE2 YGGX FEII 3D-STRUCTURE OXIDATIVE CONTROL DIRECT 1 73 3.0E-38 T 22-04-2016 IPR007457 Fe(II) trafficking protein YggX GO:0005506 PP4_RS01590 f740b3e91bb9e0af279ebe258d7f6b43 90 PANTHER PTHR36965:SF1 2 90 1.6E-47 T 22-04-2016 PP4_RS26020 e80f8fe64cdb6243216108ac1f4ce678 206 PANTHER PTHR10108:SF831 1 166 3.3E-77 T 22-04-2016 PP4_RS26020 e80f8fe64cdb6243216108ac1f4ce678 206 PANTHER PTHR10108 1 166 3.3E-77 T 22-04-2016 PP4_RS26020 e80f8fe64cdb6243216108ac1f4ce678 206 TIGRFAM TIGR02081 metW: methionine biosynthesis protein MetW 2 195 6.2E-94 T 22-04-2016 IPR010743 Methionine biosynthesis MetW PP4_RS26020 e80f8fe64cdb6243216108ac1f4ce678 206 SUPERFAMILY SSF53335 3 185 2.47E-31 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS26020 e80f8fe64cdb6243216108ac1f4ce678 206 Gene3D G3DSA:3.40.50.150 12 166 3.5E-27 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS26020 e80f8fe64cdb6243216108ac1f4ce678 206 Pfam PF07021 Methionine biosynthesis protein MetW 2 194 7.0E-90 T 22-04-2016 IPR010743 Methionine biosynthesis MetW PP4_RS13430 447dec1b76c4ef620e3c772d22a5817f 387 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 219 2.0E-20 T 22-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 PP4_RS13430 447dec1b76c4ef620e3c772d22a5817f 387 Gene3D G3DSA:1.10.540.10 6 117 1.4E-29 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS13430 447dec1b76c4ef620e3c772d22a5817f 387 Gene3D G3DSA:1.20.140.10 222 386 3.5E-54 T 22-04-2016 PP4_RS13430 447dec1b76c4ef620e3c772d22a5817f 387 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 232 365 2.7E-35 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS13430 447dec1b76c4ef620e3c772d22a5817f 387 PANTHER PTHR10909:SF285 7 387 4.0E-270 T 22-04-2016 PP4_RS13430 447dec1b76c4ef620e3c772d22a5817f 387 SUPERFAMILY SSF47203 230 385 1.01E-43 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS13430 447dec1b76c4ef620e3c772d22a5817f 387 SUPERFAMILY SSF56645 6 244 1.1E-59 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 PP4_RS13430 447dec1b76c4ef620e3c772d22a5817f 387 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 116 1.1E-24 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS13430 447dec1b76c4ef620e3c772d22a5817f 387 Gene3D G3DSA:2.40.110.10 121 221 1.8E-30 T 22-04-2016 PP4_RS13430 447dec1b76c4ef620e3c772d22a5817f 387 PANTHER PTHR10909 7 387 4.0E-270 T 22-04-2016 PP4_RS13430 447dec1b76c4ef620e3c772d22a5817f 387 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 339 358 - T 22-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 PP4_RS08200 df27e4fee45340029413e14d515c5dcc 339 Gene3D G3DSA:1.10.3720.10 132 329 3.0E-19 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS08200 df27e4fee45340029413e14d515c5dcc 339 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 158 338 4.0E-26 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS08200 df27e4fee45340029413e14d515c5dcc 339 SUPERFAMILY SSF161098 136 322 3.79E-19 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS08200 df27e4fee45340029413e14d515c5dcc 339 PANTHER PTHR30325 1 339 9.2E-201 T 22-04-2016 PP4_RS07685 6297da8a2f09235d206ac4fa49752db5 182 PANTHER PTHR11776 7 177 2.7E-63 T 22-04-2016 PP4_RS07685 6297da8a2f09235d206ac4fa49752db5 182 Hamap MF_00004 Adenine phosphoribosyltransferase [apt]. 8 177 33.967 T 22-04-2016 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|UniPathway: UPA00588 PP4_RS07685 6297da8a2f09235d206ac4fa49752db5 182 SUPERFAMILY SSF53271 6 177 2.49E-48 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like PP4_RS07685 6297da8a2f09235d206ac4fa49752db5 182 TIGRFAM TIGR01090 apt: adenine phosphoribosyltransferase 8 176 5.5E-56 T 22-04-2016 IPR005764 Adenine phosphoribosyl transferase GO:0003999|GO:0005737|GO:0006168 KEGG: 00230+2.4.2.7|MetaCyc: PWY-6605|MetaCyc: PWY-6610|UniPathway: UPA00588 PP4_RS07685 6297da8a2f09235d206ac4fa49752db5 182 PANTHER PTHR11776:SF0 7 177 2.7E-63 T 22-04-2016 PP4_RS07685 6297da8a2f09235d206ac4fa49752db5 182 Pfam PF00156 Phosphoribosyl transferase domain 44 157 1.4E-14 T 22-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 PP4_RS07685 6297da8a2f09235d206ac4fa49752db5 182 Gene3D G3DSA:3.40.50.2020 7 177 1.8E-58 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like PP4_RS14855 8c58193f519006d519678bcd0cda64bb 251 Gene3D G3DSA:3.40.225.10 5 218 5.6E-68 T 22-04-2016 IPR001303 Class II aldolase/adducin N-terminal PP4_RS14855 8c58193f519006d519678bcd0cda64bb 251 PANTHER PTHR10672 5 242 4.0E-103 T 22-04-2016 PP4_RS14855 8c58193f519006d519678bcd0cda64bb 251 SUPERFAMILY SSF53639 1 217 6.87E-65 T 22-04-2016 IPR001303 Class II aldolase/adducin N-terminal PP4_RS14855 8c58193f519006d519678bcd0cda64bb 251 SMART SM01007 10 190 2.0E-68 T 22-04-2016 IPR001303 Class II aldolase/adducin N-terminal PP4_RS14855 8c58193f519006d519678bcd0cda64bb 251 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 10 190 5.5E-49 T 22-04-2016 IPR001303 Class II aldolase/adducin N-terminal PP4_RS23915 9ccff1462732db0c840c07549058f614 233 SMART SM00345 17 76 4.7E-22 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS23915 9ccff1462732db0c840c07549058f614 233 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 2.4E-9 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS23915 9ccff1462732db0c840c07549058f614 233 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 2.4E-9 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS23915 9ccff1462732db0c840c07549058f614 233 Gene3D G3DSA:1.20.120.530 92 231 4.0E-28 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PP4_RS23915 9ccff1462732db0c840c07549058f614 233 Pfam PF00392 Bacterial regulatory proteins, gntR family 17 76 3.1E-20 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS23915 9ccff1462732db0c840c07549058f614 233 Gene3D G3DSA:1.10.10.10 9 81 3.7E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS23915 9ccff1462732db0c840c07549058f614 233 PANTHER PTHR11751 21 113 6.5E-29 T 22-04-2016 PP4_RS23915 9ccff1462732db0c840c07549058f614 233 SUPERFAMILY SSF48008 94 231 4.18E-26 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PP4_RS23915 9ccff1462732db0c840c07549058f614 233 SUPERFAMILY SSF46785 9 80 2.73E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS23915 9ccff1462732db0c840c07549058f614 233 Pfam PF07729 FCD domain 97 224 6.2E-22 T 22-04-2016 IPR011711 GntR, C-terminal PP4_RS23915 9ccff1462732db0c840c07549058f614 233 SMART SM00895 97 225 3.1E-22 T 22-04-2016 IPR011711 GntR, C-terminal PP4_RS07800 d473c10d77947bfb2ae88fbc00edf37a 252 PANTHER PTHR35272:SF2 1 252 4.6E-120 T 22-04-2016 PP4_RS07800 d473c10d77947bfb2ae88fbc00edf37a 252 Pfam PF13098 Thioredoxin-like domain 119 248 4.7E-15 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS07800 d473c10d77947bfb2ae88fbc00edf37a 252 PANTHER PTHR35272 1 252 4.6E-120 T 22-04-2016 PP4_RS07800 d473c10d77947bfb2ae88fbc00edf37a 252 SUPERFAMILY SSF52833 91 250 2.51E-37 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS07800 d473c10d77947bfb2ae88fbc00edf37a 252 Gene3D G3DSA:3.40.30.10 110 251 1.8E-37 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS07800 d473c10d77947bfb2ae88fbc00edf37a 252 Gene3D G3DSA:3.10.450.70 61 82 9.2E-4 T 22-04-2016 IPR009094 Disulphide bond isomerase, DsbC, N-terminal PP4_RS07800 d473c10d77947bfb2ae88fbc00edf37a 252 SUPERFAMILY SSF54423 23 82 2.09E-18 T 22-04-2016 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal PP4_RS25415 2d111f7de7e770dd766aba1c717ff51b 281 TIGRFAM TIGR00676 fadh2: methylenetetrahydrofolate reductase [NAD(P)H] 7 278 8.1E-102 T 22-04-2016 IPR004620 5,10-methylenetetrahydrofolate reductase GO:0004489|GO:0005829|GO:0009086|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 PP4_RS25415 2d111f7de7e770dd766aba1c717ff51b 281 PANTHER PTHR21091 136 271 9.7E-41 T 22-04-2016 PP4_RS25415 2d111f7de7e770dd766aba1c717ff51b 281 Pfam PF02219 Methylenetetrahydrofolate reductase 4 277 1.9E-89 T 22-04-2016 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 PP4_RS25415 2d111f7de7e770dd766aba1c717ff51b 281 PANTHER PTHR21091:SF31 136 271 9.7E-41 T 22-04-2016 PP4_RS25415 2d111f7de7e770dd766aba1c717ff51b 281 Gene3D G3DSA:3.20.20.220 3 279 1.4E-106 T 22-04-2016 IPR029041 FAD-linked oxidoreductase-like PP4_RS25415 2d111f7de7e770dd766aba1c717ff51b 281 SUPERFAMILY SSF51730 4 279 2.75E-94 T 22-04-2016 IPR029041 FAD-linked oxidoreductase-like PP4_RS11100 3afc787d76d22eecaf17bfe7a5ceb5f2 179 PANTHER PTHR33221:SF6 4 165 3.9E-64 T 22-04-2016 PP4_RS11100 3afc787d76d22eecaf17bfe7a5ceb5f2 179 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 5 143 2.6E-29 T 22-04-2016 IPR000944 Transcription regulator Rrf2-type PP4_RS11100 3afc787d76d22eecaf17bfe7a5ceb5f2 179 Gene3D G3DSA:1.10.10.10 5 154 2.3E-36 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS11100 3afc787d76d22eecaf17bfe7a5ceb5f2 179 SUPERFAMILY SSF46785 5 146 3.6E-28 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS11100 3afc787d76d22eecaf17bfe7a5ceb5f2 179 Pfam PF02082 Transcriptional regulator 4 85 6.4E-23 T 22-04-2016 IPR000944 Transcription regulator Rrf2-type PP4_RS11100 3afc787d76d22eecaf17bfe7a5ceb5f2 179 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 51 69 - T 22-04-2016 IPR030489 Transcription regulator Rrf2-type, conserved site PP4_RS11100 3afc787d76d22eecaf17bfe7a5ceb5f2 179 PANTHER PTHR33221 4 165 3.9E-64 T 22-04-2016 PP4_RS02470 63fb1711f3cfa6e99c05044d369e3cd8 1357 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 8 1353 0.0 T 22-04-2016 IPR010243 DNA-directed RNA polymerase, beta subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PP4_RS02470 63fb1711f3cfa6e99c05044d369e3cd8 1357 Gene3D G3DSA:2.40.50.150 1062 1076 6.0E-57 T 22-04-2016 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PP4_RS02470 63fb1711f3cfa6e99c05044d369e3cd8 1357 Gene3D G3DSA:2.40.50.150 833 942 6.0E-57 T 22-04-2016 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PP4_RS02470 63fb1711f3cfa6e99c05044d369e3cd8 1357 PANTHER PTHR20856:SF20 1051 1145 0.0 T 22-04-2016 PP4_RS02470 63fb1711f3cfa6e99c05044d369e3cd8 1357 PANTHER PTHR20856:SF20 345 730 0.0 T 22-04-2016 PP4_RS02470 63fb1711f3cfa6e99c05044d369e3cd8 1357 PANTHER PTHR20856:SF20 1197 1357 0.0 T 22-04-2016 PP4_RS02470 63fb1711f3cfa6e99c05044d369e3cd8 1357 PANTHER PTHR20856:SF20 748 935 0.0 T 22-04-2016 PP4_RS02470 63fb1711f3cfa6e99c05044d369e3cd8 1357 PANTHER PTHR20856:SF20 5 234 0.0 T 22-04-2016 PP4_RS02470 63fb1711f3cfa6e99c05044d369e3cd8 1357 PANTHER PTHR20856 1051 1145 0.0 T 22-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PP4_RS02470 63fb1711f3cfa6e99c05044d369e3cd8 1357 PANTHER PTHR20856 345 730 0.0 T 22-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PP4_RS02470 63fb1711f3cfa6e99c05044d369e3cd8 1357 PANTHER PTHR20856 1197 1357 0.0 T 22-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PP4_RS02470 63fb1711f3cfa6e99c05044d369e3cd8 1357 PANTHER PTHR20856 748 935 0.0 T 22-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PP4_RS02470 63fb1711f3cfa6e99c05044d369e3cd8 1357 PANTHER PTHR20856 5 234 0.0 T 22-04-2016 IPR015712 DNA-directed RNA polymerase, subunit 2 GO:0003899|GO:0006351|GO:0032549 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PP4_RS02470 63fb1711f3cfa6e99c05044d369e3cd8 1357 ProSitePatterns PS01166 RNA polymerases beta chain signature. 1080 1092 - T 22-04-2016 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PP4_RS02470 63fb1711f3cfa6e99c05044d369e3cd8 1357 Pfam PF04563 RNA polymerase beta subunit 26 504 1.0E-40 T 22-04-2016 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PP4_RS02470 63fb1711f3cfa6e99c05044d369e3cd8 1357 Gene3D G3DSA:3.90.1100.10 450 596 1.2E-148 T 22-04-2016 PP4_RS02470 63fb1711f3cfa6e99c05044d369e3cd8 1357 Gene3D G3DSA:3.90.1100.10 664 718 1.2E-148 T 22-04-2016 PP4_RS02470 63fb1711f3cfa6e99c05044d369e3cd8 1357 Gene3D G3DSA:3.90.1100.10 20 155 1.2E-148 T 22-04-2016 PP4_RS02470 63fb1711f3cfa6e99c05044d369e3cd8 1357 Pfam PF04565 RNA polymerase Rpb2, domain 3 518 585 9.8E-31 T 22-04-2016 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PP4_RS02470 63fb1711f3cfa6e99c05044d369e3cd8 1357 Pfam PF00562 RNA polymerase Rpb2, domain 6 722 1279 4.9E-161 T 22-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PP4_RS02470 63fb1711f3cfa6e99c05044d369e3cd8 1357 Pfam PF10385 RNA polymerase beta subunit external 1 domain 596 661 6.2E-19 T 22-04-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PP4_RS02470 63fb1711f3cfa6e99c05044d369e3cd8 1357 Pfam PF04561 RNA polymerase Rpb2, domain 2 362 459 1.8E-15 T 22-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PP4_RS02470 63fb1711f3cfa6e99c05044d369e3cd8 1357 Pfam PF04561 RNA polymerase Rpb2, domain 2 156 226 1.9E-7 T 22-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PP4_RS02470 63fb1711f3cfa6e99c05044d369e3cd8 1357 Gene3D G3DSA:2.40.270.10 1077 1257 2.8E-87 T 22-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PP4_RS02470 63fb1711f3cfa6e99c05044d369e3cd8 1357 Gene3D G3DSA:2.40.270.10 798 825 2.8E-87 T 22-04-2016 IPR007120 DNA-directed RNA polymerase, subunit 2, domain 6 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PP4_RS02470 63fb1711f3cfa6e99c05044d369e3cd8 1357 Gene3D G3DSA:2.30.150.10 597 661 5.8E-22 T 22-04-2016 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PP4_RS02470 63fb1711f3cfa6e99c05044d369e3cd8 1357 Pfam PF04560 RNA polymerase Rpb2, domain 7 1281 1356 4.5E-27 T 22-04-2016 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PP4_RS02470 63fb1711f3cfa6e99c05044d369e3cd8 1357 Gene3D G3DSA:2.40.50.100 719 797 8.4E-32 T 22-04-2016 PP4_RS02470 63fb1711f3cfa6e99c05044d369e3cd8 1357 Gene3D G3DSA:3.90.1110.10 351 449 1.8E-67 T 22-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PP4_RS02470 63fb1711f3cfa6e99c05044d369e3cd8 1357 Gene3D G3DSA:3.90.1110.10 157 234 1.8E-67 T 22-04-2016 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PP4_RS02470 63fb1711f3cfa6e99c05044d369e3cd8 1357 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 13 1357 12.318 T 22-04-2016 IPR010243 DNA-directed RNA polymerase, beta subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PP4_RS02470 63fb1711f3cfa6e99c05044d369e3cd8 1357 SUPERFAMILY SSF64484 1056 1356 0.0 T 22-04-2016 PP4_RS02470 63fb1711f3cfa6e99c05044d369e3cd8 1357 SUPERFAMILY SSF64484 11 230 0.0 T 22-04-2016 PP4_RS02470 63fb1711f3cfa6e99c05044d369e3cd8 1357 SUPERFAMILY SSF64484 348 944 0.0 T 22-04-2016 PP4_RS03755 65c19bd139e80a9923a6372494463c37 297 PANTHER PTHR30419:SF8 1 290 1.0E-109 T 22-04-2016 PP4_RS03755 65c19bd139e80a9923a6372494463c37 297 Pfam PF03466 LysR substrate binding domain 89 291 1.3E-45 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS03755 65c19bd139e80a9923a6372494463c37 297 Gene3D G3DSA:3.40.190.10 89 174 5.4E-15 T 22-04-2016 PP4_RS03755 65c19bd139e80a9923a6372494463c37 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 5.4E-21 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS03755 65c19bd139e80a9923a6372494463c37 297 Gene3D G3DSA:3.40.190.10 175 261 3.1E-27 T 22-04-2016 PP4_RS03755 65c19bd139e80a9923a6372494463c37 297 SUPERFAMILY SSF53850 90 291 7.87E-39 T 22-04-2016 PP4_RS03755 65c19bd139e80a9923a6372494463c37 297 SUPERFAMILY SSF46785 1 85 9.67E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS03755 65c19bd139e80a9923a6372494463c37 297 Gene3D G3DSA:1.10.10.10 1 85 7.4E-26 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS03755 65c19bd139e80a9923a6372494463c37 297 PANTHER PTHR30419 1 290 1.0E-109 T 22-04-2016 PP4_RS03755 65c19bd139e80a9923a6372494463c37 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.8E-9 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS03755 65c19bd139e80a9923a6372494463c37 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.8E-9 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS03755 65c19bd139e80a9923a6372494463c37 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.8E-9 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS22370 bf3e208e9e8a47f159879cfac6e217c2 349 Pfam PF02547 Queuosine biosynthesis protein 4 336 1.4E-136 T 22-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 PP4_RS22370 bf3e208e9e8a47f159879cfac6e217c2 349 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 1 337 47.836 T 22-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 PP4_RS22370 bf3e208e9e8a47f159879cfac6e217c2 349 PANTHER PTHR30307 2 343 6.6E-182 T 22-04-2016 PP4_RS22370 bf3e208e9e8a47f159879cfac6e217c2 349 Gene3D G3DSA:2.40.10.240 64 132 1.2E-15 T 22-04-2016 PP4_RS22370 bf3e208e9e8a47f159879cfac6e217c2 349 Gene3D G3DSA:3.40.1780.10 1 62 1.1E-103 T 22-04-2016 PP4_RS22370 bf3e208e9e8a47f159879cfac6e217c2 349 Gene3D G3DSA:3.40.1780.10 175 337 1.1E-103 T 22-04-2016 PP4_RS22370 bf3e208e9e8a47f159879cfac6e217c2 349 SUPERFAMILY SSF111337 1 336 8.37E-138 T 22-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 PP4_RS22370 bf3e208e9e8a47f159879cfac6e217c2 349 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1 337 1.3E-148 T 22-04-2016 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700|UniPathway: UPA00392 PP4_RS22370 bf3e208e9e8a47f159879cfac6e217c2 349 PANTHER PTHR30307:SF0 2 343 6.6E-182 T 22-04-2016 PP4_RS09085 af0985045bc9a54412579c7cf6042864 307 PANTHER PTHR30537:SF5 1 296 7.4E-76 T 22-04-2016 PP4_RS09085 af0985045bc9a54412579c7cf6042864 307 SUPERFAMILY SSF46785 7 114 3.33E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS09085 af0985045bc9a54412579c7cf6042864 307 Gene3D G3DSA:3.40.190.10 91 173 1.1E-6 T 22-04-2016 PP4_RS09085 af0985045bc9a54412579c7cf6042864 307 PANTHER PTHR30537 1 296 7.4E-76 T 22-04-2016 PP4_RS09085 af0985045bc9a54412579c7cf6042864 307 Gene3D G3DSA:3.40.190.10 174 262 4.8E-17 T 22-04-2016 PP4_RS09085 af0985045bc9a54412579c7cf6042864 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 1.7E-16 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS09085 af0985045bc9a54412579c7cf6042864 307 SUPERFAMILY SSF53850 93 297 5.25E-34 T 22-04-2016 PP4_RS09085 af0985045bc9a54412579c7cf6042864 307 Gene3D G3DSA:1.10.10.10 6 90 6.8E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS09085 af0985045bc9a54412579c7cf6042864 307 Pfam PF03466 LysR substrate binding domain 90 297 2.0E-34 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS03080 2dac83739c852b7a31308c44c866d39d 696 Pfam PF13437 HlyD family secretion protein 540 617 6.4E-8 T 22-04-2016 PP4_RS03080 2dac83739c852b7a31308c44c866d39d 696 PANTHER PTHR13325 124 543 3.7E-43 T 22-04-2016 IPR001193 Membrane-bound transcription factor site-2 protease GO:0004222|GO:0006508|GO:0016020 PP4_RS03080 2dac83739c852b7a31308c44c866d39d 696 PANTHER PTHR13325:SF4 124 543 3.7E-43 T 22-04-2016 PP4_RS10245 a110ad7d71f94b4a56704c8296f4f6ce 274 SUPERFAMILY SSF51306 178 268 5.89E-15 T 22-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C PP4_RS10245 a110ad7d71f94b4a56704c8296f4f6ce 274 PANTHER PTHR40661 25 269 2.1E-12 T 22-04-2016 PP4_RS10245 a110ad7d71f94b4a56704c8296f4f6ce 274 Pfam PF00717 Peptidase S24-like 190 255 2.8E-12 T 22-04-2016 IPR019759 Peptidase S24/S26A/S26B PP4_RS10245 a110ad7d71f94b4a56704c8296f4f6ce 274 Gene3D G3DSA:2.10.109.10 180 270 3.1E-11 T 22-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain PP4_RS15475 156416a2edc1284226a79d63c617d358 533 SUPERFAMILY SSF82689 412 503 1.19E-12 T 22-04-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 PP4_RS15475 156416a2edc1284226a79d63c617d358 533 Gene3D G3DSA:3.30.70.100 413 464 8.2E-6 T 22-04-2016 PP4_RS15475 156416a2edc1284226a79d63c617d358 533 SUPERFAMILY SSF50182 338 403 3.6E-12 T 22-04-2016 IPR010920 LSM domain PP4_RS15475 156416a2edc1284226a79d63c617d358 533 PANTHER PTHR30221 97 503 1.4E-86 T 22-04-2016 PP4_RS15475 156416a2edc1284226a79d63c617d358 533 Pfam PF00924 Mechanosensitive ion channel 295 498 1.9E-30 T 22-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 PP4_RS15475 156416a2edc1284226a79d63c617d358 533 PANTHER PTHR30221:SF4 97 503 1.4E-86 T 22-04-2016 PP4_RS15475 156416a2edc1284226a79d63c617d358 533 Gene3D G3DSA:2.30.30.60 355 402 6.7E-14 T 22-04-2016 PP4_RS13075 2d601e4ac570d45182e349e8d69d976b 368 TIGRFAM TIGR02050 gshA_cyan_rel: carboxylate-amine ligase, YbdK family 6 292 1.1E-113 T 22-04-2016 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 PP4_RS13075 2d601e4ac570d45182e349e8d69d976b 368 SUPERFAMILY SSF55931 5 349 1.96E-87 T 22-04-2016 PP4_RS13075 2d601e4ac570d45182e349e8d69d976b 368 Hamap MF_01609 Glutamate--cysteine ligase [gshA]. 1 368 72.523 T 22-04-2016 IPR011793 Putative glutamate--cysteine ligase YbdK GO:0016879 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 PP4_RS13075 2d601e4ac570d45182e349e8d69d976b 368 Pfam PF04107 Glutamate-cysteine ligase family 2(GCS2) 7 286 2.5E-63 T 22-04-2016 IPR006336 Glutamate--cysteine ligase, GCS2 GO:0004357|GO:0042398 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255 PP4_RS13075 2d601e4ac570d45182e349e8d69d976b 368 PANTHER PTHR36510:SF1 1 346 1.6E-107 T 22-04-2016 PP4_RS13075 2d601e4ac570d45182e349e8d69d976b 368 PANTHER PTHR36510 1 346 1.6E-107 T 22-04-2016 PP4_RS13110 3f686228cccf29e7503b94fe01324818 204 PANTHER PTHR26402:SF598 3 200 2.2E-60 T 22-04-2016 PP4_RS13110 3f686228cccf29e7503b94fe01324818 204 SUPERFAMILY SSF52172 3 128 7.54E-20 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS13110 3f686228cccf29e7503b94fe01324818 204 PANTHER PTHR26402 3 200 2.2E-60 T 22-04-2016 PP4_RS13110 3f686228cccf29e7503b94fe01324818 204 Gene3D G3DSA:1.10.10.10 143 201 3.3E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS13110 3f686228cccf29e7503b94fe01324818 204 Pfam PF00072 Response regulator receiver domain 5 117 3.8E-16 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS13110 3f686228cccf29e7503b94fe01324818 204 SUPERFAMILY SSF46894 141 201 2.99E-19 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS13110 3f686228cccf29e7503b94fe01324818 204 SMART SM00421 144 201 1.1E-20 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS13110 3f686228cccf29e7503b94fe01324818 204 SMART SM00448 3 117 4.6E-10 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS13110 3f686228cccf29e7503b94fe01324818 204 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 177 189 1.1E-12 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS13110 3f686228cccf29e7503b94fe01324818 204 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 147 161 1.1E-12 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS13110 3f686228cccf29e7503b94fe01324818 204 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 161 177 1.1E-12 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS13110 3f686228cccf29e7503b94fe01324818 204 Pfam PF00196 Bacterial regulatory proteins, luxR family 146 199 1.8E-19 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS13110 3f686228cccf29e7503b94fe01324818 204 Gene3D G3DSA:3.40.50.2300 3 126 2.0E-21 T 22-04-2016 PP4_RS05645 b30aca9a36e93162fc04657e8834d709 678 Pfam PF00175 Oxidoreductase NAD-binding domain 437 544 4.7E-12 T 22-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 PP4_RS05645 b30aca9a36e93162fc04657e8834d709 678 Gene3D G3DSA:2.30.110.10 165 274 2.3E-10 T 22-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 PP4_RS05645 b30aca9a36e93162fc04657e8834d709 678 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 603 664 1.1E-9 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS05645 b30aca9a36e93162fc04657e8834d709 678 SUPERFAMILY SSF52343 428 567 5.11E-36 T 22-04-2016 PP4_RS05645 b30aca9a36e93162fc04657e8834d709 678 Gene3D G3DSA:2.40.30.10 327 427 4.4E-29 T 22-04-2016 PP4_RS05645 b30aca9a36e93162fc04657e8834d709 678 Pfam PF00970 Oxidoreductase FAD-binding domain 334 425 4.2E-13 T 22-04-2016 IPR008333 Oxidoreductase, FAD-binding domain PP4_RS05645 b30aca9a36e93162fc04657e8834d709 678 Gene3D G3DSA:3.40.50.80 430 561 7.0E-34 T 22-04-2016 PP4_RS05645 b30aca9a36e93162fc04657e8834d709 678 PANTHER PTHR30212 8 297 4.8E-60 T 22-04-2016 PP4_RS05645 b30aca9a36e93162fc04657e8834d709 678 PRINTS PR00410 Phenol hydroxylase reductase family signature 461 470 3.0E-11 T 22-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PP4_RS05645 b30aca9a36e93162fc04657e8834d709 678 PRINTS PR00410 Phenol hydroxylase reductase family signature 420 429 3.0E-11 T 22-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PP4_RS05645 b30aca9a36e93162fc04657e8834d709 678 PRINTS PR00410 Phenol hydroxylase reductase family signature 436 455 3.0E-11 T 22-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PP4_RS05645 b30aca9a36e93162fc04657e8834d709 678 PRINTS PR00410 Phenol hydroxylase reductase family signature 532 540 3.0E-11 T 22-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PP4_RS05645 b30aca9a36e93162fc04657e8834d709 678 PRINTS PR00410 Phenol hydroxylase reductase family signature 359 371 3.0E-11 T 22-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PP4_RS05645 b30aca9a36e93162fc04657e8834d709 678 SUPERFAMILY SSF50475 170 275 1.83E-8 T 22-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 PP4_RS05645 b30aca9a36e93162fc04657e8834d709 678 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 436 455 1.0E-6 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS05645 b30aca9a36e93162fc04657e8834d709 678 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 379 386 1.0E-6 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS05645 b30aca9a36e93162fc04657e8834d709 678 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 532 540 1.0E-6 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS05645 b30aca9a36e93162fc04657e8834d709 678 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 359 369 1.0E-6 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS05645 b30aca9a36e93162fc04657e8834d709 678 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 625 633 - T 22-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 PP4_RS05645 b30aca9a36e93162fc04657e8834d709 678 SUPERFAMILY SSF54292 554 665 1.13E-19 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS05645 b30aca9a36e93162fc04657e8834d709 678 SUPERFAMILY SSF63380 327 425 9.91E-27 T 22-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 PP4_RS05645 b30aca9a36e93162fc04657e8834d709 678 Gene3D G3DSA:3.10.20.30 562 665 3.1E-23 T 22-04-2016 IPR012675 Beta-grasp domain PP4_RS05645 b30aca9a36e93162fc04657e8834d709 678 PANTHER PTHR30212:SF3 8 297 4.8E-60 T 22-04-2016 PP4_RS05645 b30aca9a36e93162fc04657e8834d709 678 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 171 266 8.7E-12 T 22-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 PP4_RS05645 b30aca9a36e93162fc04657e8834d709 678 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 41 133 1.5E-5 T 22-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 PP4_RS25590 9316274e09c1bfa3c3e1a34d097de391 91 TIGRFAM TIGR02610 PHA_gran_rgn: putative polyhydroxyalkanoic acid system protein 1 91 3.9E-48 T 22-04-2016 IPR013433 Putative polyhydroxyalkanoic acid system protein PP4_RS25590 9316274e09c1bfa3c3e1a34d097de391 91 Pfam PF09650 Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn) 4 90 5.7E-31 T 22-04-2016 IPR013433 Putative polyhydroxyalkanoic acid system protein PP4_RS04130 f0cd0fdefd5bdb14be6ead58d1934ab5 342 Gene3D G3DSA:3.40.190.10 128 225 2.1E-14 T 22-04-2016 PP4_RS04130 f0cd0fdefd5bdb14be6ead58d1934ab5 342 PANTHER PTHR30085 1 311 7.1E-178 T 22-04-2016 PP4_RS04130 f0cd0fdefd5bdb14be6ead58d1934ab5 342 Gene3D G3DSA:3.40.190.10 226 252 3.6E-17 T 22-04-2016 PP4_RS04130 f0cd0fdefd5bdb14be6ead58d1934ab5 342 Gene3D G3DSA:3.40.190.10 34 127 3.6E-17 T 22-04-2016 PP4_RS04130 f0cd0fdefd5bdb14be6ead58d1934ab5 342 PANTHER PTHR30085:SF5 1 311 7.1E-178 T 22-04-2016 PP4_RS04130 f0cd0fdefd5bdb14be6ead58d1934ab5 342 SMART SM00062 37 266 5.8E-53 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS04130 f0cd0fdefd5bdb14be6ead58d1934ab5 342 SUPERFAMILY SSF53850 28 255 6.52E-48 T 22-04-2016 PP4_RS04130 f0cd0fdefd5bdb14be6ead58d1934ab5 342 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 38 252 7.0E-30 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS02130 8cae36f44bbf15ceb2fec326067c8414 616 Pfam PF04546 Sigma-70, non-essential region 139 351 1.5E-60 T 22-04-2016 IPR007631 RNA polymerase sigma factor 70, non-essential domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS02130 8cae36f44bbf15ceb2fec326067c8414 616 PANTHER PTHR30603:SF0 329 615 6.6E-252 T 22-04-2016 PP4_RS02130 8cae36f44bbf15ceb2fec326067c8414 616 PANTHER PTHR30603:SF0 7 152 6.6E-252 T 22-04-2016 PP4_RS02130 8cae36f44bbf15ceb2fec326067c8414 616 Pfam PF04539 Sigma-70 region 3 461 536 1.5E-29 T 22-04-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS02130 8cae36f44bbf15ceb2fec326067c8414 616 Gene3D G3DSA:1.10.10.10 455 506 1.9E-27 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS02130 8cae36f44bbf15ceb2fec326067c8414 616 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 6 615 47.655 T 22-04-2016 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 PP4_RS02130 8cae36f44bbf15ceb2fec326067c8414 616 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 406 419 - T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS02130 8cae36f44bbf15ceb2fec326067c8414 616 Gene3D G3DSA:1.10.601.10 112 451 8.7E-136 T 22-04-2016 PP4_RS02130 8cae36f44bbf15ceb2fec326067c8414 616 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 378 614 1.9E-121 T 22-04-2016 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 PP4_RS02130 8cae36f44bbf15ceb2fec326067c8414 616 Pfam PF04545 Sigma-70, region 4 550 603 1.3E-18 T 22-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS02130 8cae36f44bbf15ceb2fec326067c8414 616 SUPERFAMILY SSF88659 455 528 9.42E-21 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS02130 8cae36f44bbf15ceb2fec326067c8414 616 Pfam PF04542 Sigma-70 region 2 382 451 1.7E-21 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS02130 8cae36f44bbf15ceb2fec326067c8414 616 Pfam PF00140 Sigma-70 factor, region 1.2 98 128 3.8E-13 T 22-04-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS02130 8cae36f44bbf15ceb2fec326067c8414 616 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 575 601 - T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS02130 8cae36f44bbf15ceb2fec326067c8414 616 Gene3D G3DSA:1.10.10.10 545 615 2.0E-32 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS02130 8cae36f44bbf15ceb2fec326067c8414 616 SUPERFAMILY SSF88946 115 449 1.44E-103 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS02130 8cae36f44bbf15ceb2fec326067c8414 616 PANTHER PTHR30603 329 615 6.6E-252 T 22-04-2016 PP4_RS02130 8cae36f44bbf15ceb2fec326067c8414 616 PANTHER PTHR30603 7 152 6.6E-252 T 22-04-2016 PP4_RS02130 8cae36f44bbf15ceb2fec326067c8414 616 SUPERFAMILY SSF88659 512 614 9.91E-27 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS02130 8cae36f44bbf15ceb2fec326067c8414 616 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 378 603 7.6E-37 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS02130 8cae36f44bbf15ceb2fec326067c8414 616 Pfam PF03979 Sigma-70 factor, region 1.1 6 83 3.4E-30 T 22-04-2016 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 PP4_RS02130 8cae36f44bbf15ceb2fec326067c8414 616 PRINTS PR00046 Major sigma-70 factor signature 554 566 6.5E-31 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS02130 8cae36f44bbf15ceb2fec326067c8414 616 PRINTS PR00046 Major sigma-70 factor signature 575 590 6.5E-31 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS02130 8cae36f44bbf15ceb2fec326067c8414 616 PRINTS PR00046 Major sigma-70 factor signature 590 601 6.5E-31 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS02130 8cae36f44bbf15ceb2fec326067c8414 616 PRINTS PR00046 Major sigma-70 factor signature 430 438 6.5E-31 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS02130 8cae36f44bbf15ceb2fec326067c8414 616 PRINTS PR00046 Major sigma-70 factor signature 406 419 6.5E-31 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS14335 3508c2bc439f70ca830aff02aa1a7d97 351 Gene3D G3DSA:1.25.40.10 245 328 5.4E-16 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS14335 3508c2bc439f70ca830aff02aa1a7d97 351 Gene3D G3DSA:1.25.10.10 41 163 4.6E-6 T 22-04-2016 IPR011989 Armadillo-like helical PP4_RS14335 3508c2bc439f70ca830aff02aa1a7d97 351 SUPERFAMILY SSF48431 40 167 7.59E-9 T 22-04-2016 IPR011030 Vitellinogen, superhelical GO:0005319|GO:0006869 Reactome: REACT_22258 PP4_RS14335 3508c2bc439f70ca830aff02aa1a7d97 351 SMART SM00028 243 276 16.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS14335 3508c2bc439f70ca830aff02aa1a7d97 351 SMART SM00028 175 208 0.002 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS14335 3508c2bc439f70ca830aff02aa1a7d97 351 SMART SM00028 277 310 9.8 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS14335 3508c2bc439f70ca830aff02aa1a7d97 351 SMART SM00028 209 242 230.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS14335 3508c2bc439f70ca830aff02aa1a7d97 351 Pfam PF13646 HEAT repeats 57 142 4.0E-7 T 22-04-2016 PP4_RS14335 3508c2bc439f70ca830aff02aa1a7d97 351 Pfam PF13432 Tetratricopeptide repeat 158 208 4.4E-9 T 22-04-2016 PP4_RS14335 3508c2bc439f70ca830aff02aa1a7d97 351 PANTHER PTHR23083 7 15 3.4E-24 T 22-04-2016 PP4_RS14335 3508c2bc439f70ca830aff02aa1a7d97 351 PANTHER PTHR23083 154 351 3.4E-24 T 22-04-2016 PP4_RS14335 3508c2bc439f70ca830aff02aa1a7d97 351 SUPERFAMILY SSF48452 155 313 2.78E-28 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS14335 3508c2bc439f70ca830aff02aa1a7d97 351 Gene3D G3DSA:1.25.40.10 164 244 8.9E-18 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS14335 3508c2bc439f70ca830aff02aa1a7d97 351 Pfam PF14559 Tetratricopeptide repeat 261 317 1.2E-6 T 22-04-2016 PP4_RS13820 535416008c22dffe5b72da8ebc957a99 146 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 4.3E-14 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS13820 535416008c22dffe5b72da8ebc957a99 146 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 4.3E-14 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS13820 535416008c22dffe5b72da8ebc957a99 146 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 4.3E-14 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS13820 535416008c22dffe5b72da8ebc957a99 146 SUPERFAMILY SSF46785 4 58 2.63E-13 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS13820 535416008c22dffe5b72da8ebc957a99 146 SUPERFAMILY SSF54909 66 143 3.89E-10 T 22-04-2016 IPR011008 Dimeric alpha-beta barrel PP4_RS13820 535416008c22dffe5b72da8ebc957a99 146 Pfam PF01037 Lrp/AsnC ligand binding domain 81 138 1.4E-8 T 22-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PP4_RS13820 535416008c22dffe5b72da8ebc957a99 146 Gene3D G3DSA:3.30.70.920 65 140 1.5E-9 T 22-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PP4_RS13820 535416008c22dffe5b72da8ebc957a99 146 SMART SM00344 4 109 4.4E-14 T 22-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 PP4_RS13820 535416008c22dffe5b72da8ebc957a99 146 Gene3D G3DSA:1.10.10.10 1 55 2.2E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS13820 535416008c22dffe5b72da8ebc957a99 146 Pfam PF13412 Winged helix-turn-helix DNA-binding 4 51 4.4E-14 T 22-04-2016 PP4_RS13820 535416008c22dffe5b72da8ebc957a99 146 PANTHER PTHR30154 1 143 1.2E-23 T 22-04-2016 PP4_RS16440 6a53c96d9b6d0e8936a162d19abfaaad 457 Gene3D G3DSA:2.30.40.10 7 74 5.5E-15 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PP4_RS16440 6a53c96d9b6d0e8936a162d19abfaaad 457 PANTHER PTHR11271 7 455 2.6E-188 T 22-04-2016 PP4_RS16440 6a53c96d9b6d0e8936a162d19abfaaad 457 Pfam PF01979 Amidohydrolase family 63 428 1.5E-62 T 22-04-2016 IPR006680 Amidohydrolase-related GO:0016787 PP4_RS16440 6a53c96d9b6d0e8936a162d19abfaaad 457 Gene3D G3DSA:3.20.20.140 75 397 9.1E-111 T 22-04-2016 PP4_RS16440 6a53c96d9b6d0e8936a162d19abfaaad 457 SUPERFAMILY SSF51338 379 454 8.5E-25 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PP4_RS16440 6a53c96d9b6d0e8936a162d19abfaaad 457 SUPERFAMILY SSF51338 15 66 8.5E-25 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PP4_RS16440 6a53c96d9b6d0e8936a162d19abfaaad 457 PANTHER PTHR11271:SF37 7 455 2.6E-188 T 22-04-2016 PP4_RS16440 6a53c96d9b6d0e8936a162d19abfaaad 457 SUPERFAMILY SSF51556 66 378 3.04E-98 T 22-04-2016 IPR032466 Metal-dependent hydrolase PP4_RS19870 f86b2b4cd0dc8e3415367720a450424e 63 Pfam PF13396 Phospholipase_D-nuclease N-terminal 15 56 1.8E-9 T 22-04-2016 IPR027379 Cardiolipin synthase N-terminal PP4_RS06530 8c244047b8ed2ec1dfff4ebbf5ab5f6e 610 SUPERFAMILY SSF52540 351 602 1.78E-86 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS06530 8c244047b8ed2ec1dfff4ebbf5ab5f6e 610 PANTHER PTHR24221 3 606 0.0 T 22-04-2016 PP4_RS06530 8c244047b8ed2ec1dfff4ebbf5ab5f6e 610 SUPERFAMILY SSF90123 29 348 4.05E-50 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PP4_RS06530 8c244047b8ed2ec1dfff4ebbf5ab5f6e 610 ProSitePatterns PS00211 ABC transporters family signature. 504 518 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS06530 8c244047b8ed2ec1dfff4ebbf5ab5f6e 610 SMART SM00382 387 578 1.8E-22 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS06530 8c244047b8ed2ec1dfff4ebbf5ab5f6e 610 Gene3D G3DSA:3.40.50.300 361 597 1.8E-78 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS06530 8c244047b8ed2ec1dfff4ebbf5ab5f6e 610 Gene3D G3DSA:1.20.1560.10 30 343 8.4E-35 T 22-04-2016 PP4_RS06530 8c244047b8ed2ec1dfff4ebbf5ab5f6e 610 Pfam PF00005 ABC transporter 380 532 7.8E-34 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS06530 8c244047b8ed2ec1dfff4ebbf5ab5f6e 610 Pfam PF00664 ABC transporter transmembrane region 42 304 2.6E-13 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PP4_RS06530 8c244047b8ed2ec1dfff4ebbf5ab5f6e 610 PANTHER PTHR24221:SF203 3 606 0.0 T 22-04-2016 PP4_RS17035 5e69a17d6c56c0031ff2bb0a7a3dec35 338 PANTHER PTHR30472 1 338 1.7E-90 T 22-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 PP4_RS17035 5e69a17d6c56c0031ff2bb0a7a3dec35 338 SUPERFAMILY SSF81345 3 331 6.8E-76 T 22-04-2016 IPR029022 ABC transporter, BtuC-like PP4_RS17035 5e69a17d6c56c0031ff2bb0a7a3dec35 338 Gene3D G3DSA:1.10.3470.10 7 336 2.4E-100 T 22-04-2016 IPR029022 ABC transporter, BtuC-like PP4_RS17035 5e69a17d6c56c0031ff2bb0a7a3dec35 338 Pfam PF01032 FecCD transport family 15 332 1.6E-86 T 22-04-2016 IPR000522 ABC transporter, permease protein GO:0005215|GO:0016020 PP4_RS16815 1251140767a76eda7c24817c76640621 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 69 2.8E-17 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16815 1251140767a76eda7c24817c76640621 314 Pfam PF03466 LysR substrate binding domain 98 295 9.6E-32 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS16815 1251140767a76eda7c24817c76640621 314 SUPERFAMILY SSF46785 7 86 1.71E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16815 1251140767a76eda7c24817c76640621 314 Gene3D G3DSA:1.10.10.10 4 87 5.9E-26 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16815 1251140767a76eda7c24817c76640621 314 Gene3D G3DSA:3.40.190.10 179 266 9.9E-28 T 22-04-2016 PP4_RS16815 1251140767a76eda7c24817c76640621 314 SUPERFAMILY SSF53850 91 297 2.53E-46 T 22-04-2016 PP4_RS16815 1251140767a76eda7c24817c76640621 314 Gene3D G3DSA:3.40.190.10 286 302 7.0E-28 T 22-04-2016 PP4_RS16815 1251140767a76eda7c24817c76640621 314 Gene3D G3DSA:3.40.190.10 91 178 7.0E-28 T 22-04-2016 PP4_RS16815 1251140767a76eda7c24817c76640621 314 PANTHER PTHR30118 1 308 2.4E-77 T 22-04-2016 PP4_RS16815 1251140767a76eda7c24817c76640621 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 1.4E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16815 1251140767a76eda7c24817c76640621 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 1.4E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16815 1251140767a76eda7c24817c76640621 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 1.4E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16815 1251140767a76eda7c24817c76640621 314 PANTHER PTHR30118:SF8 1 308 2.4E-77 T 22-04-2016 PP4_RS21190 47556282f1a692427b297d34014439d1 216 TIGRFAM TIGR01351 adk: adenylate kinase 2 215 1.1E-74 T 22-04-2016 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 PP4_RS21190 47556282f1a692427b297d34014439d1 216 PRINTS PR00094 Adenylate kinase signature 4 17 5.5E-34 T 22-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 PP4_RS21190 47556282f1a692427b297d34014439d1 216 PRINTS PR00094 Adenylate kinase signature 81 97 5.5E-34 T 22-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 PP4_RS21190 47556282f1a692427b297d34014439d1 216 PRINTS PR00094 Adenylate kinase signature 32 46 5.5E-34 T 22-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 PP4_RS21190 47556282f1a692427b297d34014439d1 216 PRINTS PR00094 Adenylate kinase signature 156 171 5.5E-34 T 22-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 PP4_RS21190 47556282f1a692427b297d34014439d1 216 PRINTS PR00094 Adenylate kinase signature 173 187 5.5E-34 T 22-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 PP4_RS21190 47556282f1a692427b297d34014439d1 216 PANTHER PTHR23359 1 216 1.4E-107 T 22-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 PP4_RS21190 47556282f1a692427b297d34014439d1 216 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 22-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 PP4_RS21190 47556282f1a692427b297d34014439d1 216 SUPERFAMILY SSF52540 1 212 2.17E-43 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS21190 47556282f1a692427b297d34014439d1 216 Hamap MF_00235 Adenylate kinase [adk]. 1 216 52.807 T 22-04-2016 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 PP4_RS21190 47556282f1a692427b297d34014439d1 216 Pfam PF00406 Adenylate kinase 5 185 2.4E-55 T 22-04-2016 PP4_RS21190 47556282f1a692427b297d34014439d1 216 Pfam PF05191 Adenylate kinase, active site lid 123 158 2.7E-16 T 22-04-2016 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|MetaCyc: PWY-7219|UniPathway: UPA00588 PP4_RS21190 47556282f1a692427b297d34014439d1 216 Gene3D G3DSA:3.40.50.300 1 214 2.1E-77 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS21060 b23adc2ebcb0fab3881375fd446bd5c0 398 Gene3D G3DSA:3.90.1150.10 266 396 1.9E-26 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS21060 b23adc2ebcb0fab3881375fd446bd5c0 398 SUPERFAMILY SSF53383 2 396 1.35E-91 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS21060 b23adc2ebcb0fab3881375fd446bd5c0 398 TIGRFAM TIGR03538 DapC_gpp: succinyldiaminopimelate transaminase 1 395 4.8E-204 T 22-04-2016 IPR019878 Succinyldiaminopimelate transaminase, DapC, beta/gammaproteobacteria GO:0009016|GO:0009089 PP4_RS21060 b23adc2ebcb0fab3881375fd446bd5c0 398 PANTHER PTHR11751:SF354 12 397 1.0E-141 T 22-04-2016 PP4_RS21060 b23adc2ebcb0fab3881375fd446bd5c0 398 Gene3D G3DSA:3.40.640.10 44 265 3.9E-62 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS21060 b23adc2ebcb0fab3881375fd446bd5c0 398 PANTHER PTHR11751 12 397 1.0E-141 T 22-04-2016 PP4_RS21060 b23adc2ebcb0fab3881375fd446bd5c0 398 Pfam PF00155 Aminotransferase class I and II 32 390 7.0E-45 T 22-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PP4_RS16195 9dbd4ee1bb41b85b441be17081dfd012 1172 SUPERFAMILY SSF48452 117 329 3.54E-9 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS16195 9dbd4ee1bb41b85b441be17081dfd012 1172 Gene3D G3DSA:1.25.40.10 274 333 3.5E-9 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS16195 9dbd4ee1bb41b85b441be17081dfd012 1172 PANTHER PTHR23083 274 425 4.9E-28 T 22-04-2016 PP4_RS16195 9dbd4ee1bb41b85b441be17081dfd012 1172 PANTHER PTHR23083 468 538 4.9E-28 T 22-04-2016 PP4_RS16195 9dbd4ee1bb41b85b441be17081dfd012 1172 PANTHER PTHR23083 62 218 4.9E-28 T 22-04-2016 PP4_RS16195 9dbd4ee1bb41b85b441be17081dfd012 1172 PANTHER PTHR23083 764 777 4.9E-28 T 22-04-2016 PP4_RS16195 9dbd4ee1bb41b85b441be17081dfd012 1172 PANTHER PTHR23083 583 739 4.9E-28 T 22-04-2016 PP4_RS16195 9dbd4ee1bb41b85b441be17081dfd012 1172 Pfam PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) 806 1152 2.8E-109 T 22-04-2016 IPR008410 Cellulose synthase operon C, C-terminal GO:0019867|GO:0030244 UniPathway: UPA00694 PP4_RS16195 9dbd4ee1bb41b85b441be17081dfd012 1172 Pfam PF13432 Tetratricopeptide repeat 613 661 6.4E-4 T 22-04-2016 PP4_RS16195 9dbd4ee1bb41b85b441be17081dfd012 1172 Pfam PF13432 Tetratricopeptide repeat 275 329 4.5E-7 T 22-04-2016 PP4_RS16195 9dbd4ee1bb41b85b441be17081dfd012 1172 SUPERFAMILY SSF48452 274 326 8.22E-15 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS16195 9dbd4ee1bb41b85b441be17081dfd012 1172 SUPERFAMILY SSF48452 365 432 8.22E-15 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS16195 9dbd4ee1bb41b85b441be17081dfd012 1172 SMART SM00028 385 418 130.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS16195 9dbd4ee1bb41b85b441be17081dfd012 1172 SMART SM00028 495 528 11.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS16195 9dbd4ee1bb41b85b441be17081dfd012 1172 SMART SM00028 461 494 370.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS16195 9dbd4ee1bb41b85b441be17081dfd012 1172 SMART SM00028 607 640 27.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS16195 9dbd4ee1bb41b85b441be17081dfd012 1172 SMART SM00028 351 384 310.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS16195 9dbd4ee1bb41b85b441be17081dfd012 1172 SMART SM00028 269 302 55.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS16195 9dbd4ee1bb41b85b441be17081dfd012 1172 SMART SM00028 303 336 10.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS16195 9dbd4ee1bb41b85b441be17081dfd012 1172 SMART SM00028 676 709 33.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS16195 9dbd4ee1bb41b85b441be17081dfd012 1172 SUPERFAMILY SSF48452 607 722 1.24E-5 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS16195 9dbd4ee1bb41b85b441be17081dfd012 1172 Gene3D G3DSA:1.25.40.10 350 551 8.3E-19 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS16195 9dbd4ee1bb41b85b441be17081dfd012 1172 Gene3D G3DSA:1.25.40.10 578 736 6.9E-12 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS16195 9dbd4ee1bb41b85b441be17081dfd012 1172 Gene3D G3DSA:1.25.40.10 49 207 2.8E-6 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS16195 9dbd4ee1bb41b85b441be17081dfd012 1172 SUPERFAMILY SSF48452 464 644 2.61E-14 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS16195 9dbd4ee1bb41b85b441be17081dfd012 1172 Pfam PF14559 Tetratricopeptide repeat 361 426 6.9E-6 T 22-04-2016 PP4_RS16195 9dbd4ee1bb41b85b441be17081dfd012 1172 Pfam PF14559 Tetratricopeptide repeat 472 530 1.1E-5 T 22-04-2016 PP4_RS18350 ee6068bb9da1b3429e4279c0f226f4c6 297 PANTHER PTHR30537:SF26 7 294 9.9E-90 T 22-04-2016 PP4_RS18350 ee6068bb9da1b3429e4279c0f226f4c6 297 SUPERFAMILY SSF53850 94 295 5.25E-37 T 22-04-2016 PP4_RS18350 ee6068bb9da1b3429e4279c0f226f4c6 297 PANTHER PTHR30537 7 294 9.9E-90 T 22-04-2016 PP4_RS18350 ee6068bb9da1b3429e4279c0f226f4c6 297 Gene3D G3DSA:3.40.190.10 96 196 9.7E-31 T 22-04-2016 PP4_RS18350 ee6068bb9da1b3429e4279c0f226f4c6 297 SUPERFAMILY SSF46785 8 90 2.18E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS18350 ee6068bb9da1b3429e4279c0f226f4c6 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 69 1.0E-18 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS18350 ee6068bb9da1b3429e4279c0f226f4c6 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 4.7E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS18350 ee6068bb9da1b3429e4279c0f226f4c6 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 4.7E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS18350 ee6068bb9da1b3429e4279c0f226f4c6 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 4.7E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS18350 ee6068bb9da1b3429e4279c0f226f4c6 297 Pfam PF03466 LysR substrate binding domain 94 294 1.1E-34 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS18350 ee6068bb9da1b3429e4279c0f226f4c6 297 Gene3D G3DSA:1.10.10.10 8 88 2.9E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS07460 40a79d8c6877633958efe5c0e7328d1b 308 Gene3D G3DSA:3.40.50.150 43 306 2.2E-53 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS07460 40a79d8c6877633958efe5c0e7328d1b 308 PANTHER PTHR11061 5 263 2.3E-96 T 22-04-2016 PP4_RS07460 40a79d8c6877633958efe5c0e7328d1b 308 PANTHER PTHR11061:SF34 5 263 2.3E-96 T 22-04-2016 PP4_RS07460 40a79d8c6877633958efe5c0e7328d1b 308 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 24 306 1.6E-141 T 22-04-2016 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 PP4_RS07460 40a79d8c6877633958efe5c0e7328d1b 308 SUPERFAMILY SSF53335 6 281 1.59E-50 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS26660 033bfe4db9d71823b0ee7cfd037ff767 751 Gene3D G3DSA:3.30.1840.10 170 363 8.7E-69 T 22-04-2016 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 PP4_RS26660 033bfe4db9d71823b0ee7cfd037ff767 751 Gene3D G3DSA:3.30.870.10 378 562 1.8E-70 T 22-04-2016 PP4_RS26660 033bfe4db9d71823b0ee7cfd037ff767 751 SUPERFAMILY SSF56024 563 745 4.04E-71 T 22-04-2016 PP4_RS26660 033bfe4db9d71823b0ee7cfd037ff767 751 Gene3D G3DSA:3.30.870.10 563 745 1.5E-74 T 22-04-2016 PP4_RS26660 033bfe4db9d71823b0ee7cfd037ff767 751 PANTHER PTHR30218 50 743 0.0 T 22-04-2016 PP4_RS26660 033bfe4db9d71823b0ee7cfd037ff767 751 SUPERFAMILY SSF143724 171 376 3.92E-63 T 22-04-2016 PP4_RS26660 033bfe4db9d71823b0ee7cfd037ff767 751 TIGRFAM TIGR03705 poly_P_kin: polyphosphate kinase 1 68 741 1.3E-285 T 22-04-2016 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 PP4_RS26660 033bfe4db9d71823b0ee7cfd037ff767 751 Hamap MF_00347 Polyphosphate kinase [ppk]. 65 744 34.263 T 22-04-2016 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 PP4_RS26660 033bfe4db9d71823b0ee7cfd037ff767 751 Pfam PF02503 Polyphosphate kinase middle domain 184 384 4.1E-63 T 22-04-2016 IPR024953 Polyphosphate kinase middle domain KEGG: 00190+2.7.4.1 PP4_RS26660 033bfe4db9d71823b0ee7cfd037ff767 751 SUPERFAMILY SSF56024 378 559 5.65E-54 T 22-04-2016 PP4_RS26660 033bfe4db9d71823b0ee7cfd037ff767 751 SUPERFAMILY SSF140356 65 169 1.44E-36 T 22-04-2016 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 PP4_RS26660 033bfe4db9d71823b0ee7cfd037ff767 751 PIRSF PIRSF015589 38 749 9.6E-286 T 22-04-2016 IPR003414 Polyphosphate kinase GO:0006799|GO:0008976|GO:0009358 KEGG: 00190+2.7.4.1 PP4_RS26660 033bfe4db9d71823b0ee7cfd037ff767 751 Pfam PF13089 Polyphosphate kinase N-terminal domain 68 173 7.1E-35 T 22-04-2016 IPR025198 Polyphosphate kinase N-terminal domain KEGG: 00190+2.7.4.1 PP4_RS26660 033bfe4db9d71823b0ee7cfd037ff767 751 Pfam PF13090 Polyphosphate kinase C-terminal domain 393 740 3.7E-150 T 22-04-2016 IPR025200 Polyphosphate kinase C-terminal domain KEGG: 00190+2.7.4.1 PP4_RS26660 033bfe4db9d71823b0ee7cfd037ff767 751 PANTHER PTHR30218:SF0 50 743 0.0 T 22-04-2016 PP4_RS10405 514e5cc93039ab2d3e661797084dd771 322 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 109 288 8.7E-48 T 22-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 PP4_RS10405 514e5cc93039ab2d3e661797084dd771 322 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 36 317 3.3E-22 T 22-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 PP4_RS10405 514e5cc93039ab2d3e661797084dd771 322 SUPERFAMILY SSF52283 5 127 4.73E-23 T 22-04-2016 PP4_RS10405 514e5cc93039ab2d3e661797084dd771 322 PANTHER PTHR10996 28 319 1.3E-82 T 22-04-2016 PP4_RS10405 514e5cc93039ab2d3e661797084dd771 322 Gene3D G3DSA:3.40.50.720 114 290 1.4E-53 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS10405 514e5cc93039ab2d3e661797084dd771 322 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 195 217 - T 22-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site PP4_RS10405 514e5cc93039ab2d3e661797084dd771 322 PANTHER PTHR10996:SF91 28 319 1.3E-82 T 22-04-2016 PP4_RS10405 514e5cc93039ab2d3e661797084dd771 322 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 224 240 - T 22-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site PP4_RS10405 514e5cc93039ab2d3e661797084dd771 322 Gene3D G3DSA:3.40.50.720 23 113 9.3E-25 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS10405 514e5cc93039ab2d3e661797084dd771 322 SUPERFAMILY SSF51735 102 289 4.06E-48 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS18645 908c741a74598fbf82e425a5d1da1295 174 Gene3D G3DSA:2.40.440.10 7 160 2.8E-22 T 22-04-2016 PP4_RS18645 908c741a74598fbf82e425a5d1da1295 174 SUPERFAMILY SSF141523 6 60 6.41E-21 T 22-04-2016 PP4_RS18645 908c741a74598fbf82e425a5d1da1295 174 SUPERFAMILY SSF141523 88 160 6.41E-21 T 22-04-2016 PP4_RS18645 908c741a74598fbf82e425a5d1da1295 174 Pfam PF03734 L,D-transpeptidase catalytic domain 7 159 6.3E-12 T 22-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 PP4_RS04785 fcbc42cf2901f3ff372f6f46dd689ecd 204 SUPERFAMILY SSF51735 1 203 2.54E-36 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS04785 fcbc42cf2901f3ff372f6f46dd689ecd 204 Pfam PF13460 NAD(P)H-binding 8 189 2.5E-27 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS04785 fcbc42cf2901f3ff372f6f46dd689ecd 204 PANTHER PTHR15020:SF29 3 204 5.2E-69 T 22-04-2016 PP4_RS04785 fcbc42cf2901f3ff372f6f46dd689ecd 204 Gene3D G3DSA:3.40.50.720 1 204 1.3E-36 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS04785 fcbc42cf2901f3ff372f6f46dd689ecd 204 PANTHER PTHR15020 3 204 5.2E-69 T 22-04-2016 PP4_RS16100 1eeb771ee511e6319484b2c9376f11f2 491 Gene3D G3DSA:3.40.640.10 172 381 2.8E-55 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS16100 1eeb771ee511e6319484b2c9376f11f2 491 SUPERFAMILY SSF53383 118 490 2.75E-83 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS16100 1eeb771ee511e6319484b2c9376f11f2 491 SMART SM00345 23 82 5.4E-17 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS16100 1eeb771ee511e6319484b2c9376f11f2 491 Gene3D G3DSA:1.10.10.10 14 83 3.2E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16100 1eeb771ee511e6319484b2c9376f11f2 491 SUPERFAMILY SSF46785 12 84 8.55E-17 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16100 1eeb771ee511e6319484b2c9376f11f2 491 PANTHER PTHR11751:SF10 111 491 2.3E-77 T 22-04-2016 PP4_RS16100 1eeb771ee511e6319484b2c9376f11f2 491 PANTHER PTHR11751 111 491 2.3E-77 T 22-04-2016 PP4_RS16100 1eeb771ee511e6319484b2c9376f11f2 491 Pfam PF00392 Bacterial regulatory proteins, gntR family 20 82 2.2E-15 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS16100 1eeb771ee511e6319484b2c9376f11f2 491 Pfam PF00155 Aminotransferase class I and II 172 485 5.2E-22 T 22-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PP4_RS16100 1eeb771ee511e6319484b2c9376f11f2 491 Gene3D G3DSA:3.90.1150.10 382 488 7.3E-13 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS01915 cd6c8b8225f6bc41f34e164e6685f0f2 480 SUPERFAMILY SSF56112 289 441 7.34E-18 T 22-04-2016 IPR011009 Protein kinase-like domain PP4_RS01915 cd6c8b8225f6bc41f34e164e6685f0f2 480 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 69 170 1.3E-5 T 22-04-2016 IPR010440 Lipopolysaccharide kinase GO:0005524|GO:0016020|GO:0016773 PP4_RS01915 cd6c8b8225f6bc41f34e164e6685f0f2 480 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 298 441 2.1E-12 T 22-04-2016 IPR010440 Lipopolysaccharide kinase GO:0005524|GO:0016020|GO:0016773 PP4_RS01915 cd6c8b8225f6bc41f34e164e6685f0f2 480 Gene3D G3DSA:1.10.510.10 131 197 6.9E-4 T 22-04-2016 PP4_RS01915 cd6c8b8225f6bc41f34e164e6685f0f2 480 Gene3D G3DSA:1.10.510.10 392 441 6.0E-7 T 22-04-2016 PP4_RS01915 cd6c8b8225f6bc41f34e164e6685f0f2 480 SUPERFAMILY SSF56112 46 170 1.1E-14 T 22-04-2016 IPR011009 Protein kinase-like domain PP4_RS09645 9012dc2c7a28edaab398ee05720cae29 486 PANTHER PTHR11699 1 484 1.8E-271 T 22-04-2016 PP4_RS09645 9012dc2c7a28edaab398ee05720cae29 486 SUPERFAMILY SSF53720 2 479 4.71E-170 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS09645 9012dc2c7a28edaab398ee05720cae29 486 Pfam PF00171 Aldehyde dehydrogenase family 14 472 2.1E-175 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PP4_RS09645 9012dc2c7a28edaab398ee05720cae29 486 PANTHER PTHR11699:SF213 1 484 1.8E-271 T 22-04-2016 PP4_RS09645 9012dc2c7a28edaab398ee05720cae29 486 Gene3D G3DSA:3.40.309.10 256 447 3.5E-72 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PP4_RS09645 9012dc2c7a28edaab398ee05720cae29 486 TIGRFAM TIGR02299 HpaE: 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase 2 485 2.7E-223 T 22-04-2016 IPR011985 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase GO:0018480|GO:1901023 KEGG: 00010+1.2.1.-|KEGG: 00220+1.2.1.-|KEGG: 00260+1.2.1.-|KEGG: 00281+1.2.1.-|KEGG: 00300+1.2.1.-|KEGG: 00330+1.2.1.-|KEGG: 00380+1.2.1.-|KEGG: 00620+1.2.1.-|KEGG: 00624+1.2.1.-|KEGG: 00626+1.2.1.-|KEGG: 00640+1.2.1.-|KEGG: 00903+1.2.1.-|UniPathway: UPA00208 PP4_RS09645 9012dc2c7a28edaab398ee05720cae29 486 Gene3D G3DSA:3.40.605.10 2 255 9.0E-100 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS09645 9012dc2c7a28edaab398ee05720cae29 486 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 269 280 - T 22-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 PP4_RS09645 9012dc2c7a28edaab398ee05720cae29 486 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 241 248 - T 22-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 PP4_RS04540 710ffcc9aea5772a13ec2399eb0f588e 331 SUPERFAMILY SSF51735 1 263 4.55E-66 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS04540 710ffcc9aea5772a13ec2399eb0f588e 331 SUPERFAMILY SSF51735 293 327 4.55E-66 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS04540 710ffcc9aea5772a13ec2399eb0f588e 331 PANTHER PTHR10366 284 325 6.1E-87 T 22-04-2016 PP4_RS04540 710ffcc9aea5772a13ec2399eb0f588e 331 PANTHER PTHR10366 2 258 6.1E-87 T 22-04-2016 PP4_RS04540 710ffcc9aea5772a13ec2399eb0f588e 331 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 227 2.0E-30 T 22-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 PP4_RS04540 710ffcc9aea5772a13ec2399eb0f588e 331 PANTHER PTHR10366:SF418 284 325 6.1E-87 T 22-04-2016 PP4_RS04540 710ffcc9aea5772a13ec2399eb0f588e 331 PANTHER PTHR10366:SF418 2 258 6.1E-87 T 22-04-2016 PP4_RS04540 710ffcc9aea5772a13ec2399eb0f588e 331 Gene3D G3DSA:3.40.50.720 1 320 6.0E-55 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS05570 10bcf4bce93c913f965d000cda7e57fe 861 SMART SM00052 602 845 1.0E-106 T 22-04-2016 IPR001633 EAL domain PP4_RS05570 10bcf4bce93c913f965d000cda7e57fe 861 Pfam PF13188 PAS domain 307 364 1.5E-7 T 22-04-2016 IPR000014 PAS domain PP4_RS05570 10bcf4bce93c913f965d000cda7e57fe 861 SUPERFAMILY SSF141868 607 852 6.28E-85 T 22-04-2016 IPR001633 EAL domain PP4_RS05570 10bcf4bce93c913f965d000cda7e57fe 861 Gene3D G3DSA:3.30.70.270 434 600 1.2E-57 T 22-04-2016 PP4_RS05570 10bcf4bce93c913f965d000cda7e57fe 861 SUPERFAMILY SSF55073 437 592 7.85E-48 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS05570 10bcf4bce93c913f965d000cda7e57fe 861 Pfam PF00563 EAL domain 608 840 1.5E-69 T 22-04-2016 IPR001633 EAL domain PP4_RS05570 10bcf4bce93c913f965d000cda7e57fe 861 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 303 426 7.4E-12 T 22-04-2016 IPR000014 PAS domain PP4_RS05570 10bcf4bce93c913f965d000cda7e57fe 861 SMART SM00086 380 421 0.0076 T 22-04-2016 IPR001610 PAC motif PP4_RS05570 10bcf4bce93c913f965d000cda7e57fe 861 SMART SM00267 421 592 8.3E-63 T 22-04-2016 IPR000160 GGDEF domain PP4_RS05570 10bcf4bce93c913f965d000cda7e57fe 861 Gene3D G3DSA:3.20.20.450 605 852 4.3E-92 T 22-04-2016 IPR001633 EAL domain PP4_RS05570 10bcf4bce93c913f965d000cda7e57fe 861 Gene3D G3DSA:3.30.450.20 299 419 2.8E-21 T 22-04-2016 PP4_RS05570 10bcf4bce93c913f965d000cda7e57fe 861 SUPERFAMILY SSF55785 294 419 6.93E-22 T 22-04-2016 IPR000014 PAS domain PP4_RS05570 10bcf4bce93c913f965d000cda7e57fe 861 Pfam PF05228 CHASE4 domain 62 215 4.2E-14 T 22-04-2016 IPR007892 CHASE4 PP4_RS05570 10bcf4bce93c913f965d000cda7e57fe 861 PANTHER PTHR10799:SF657 463 702 3.1E-86 T 22-04-2016 PP4_RS05570 10bcf4bce93c913f965d000cda7e57fe 861 Pfam PF00990 Diguanylate cyclase, GGDEF domain 433 587 6.6E-49 T 22-04-2016 IPR000160 GGDEF domain PP4_RS05570 10bcf4bce93c913f965d000cda7e57fe 861 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 428 591 8.2E-44 T 22-04-2016 IPR000160 GGDEF domain PP4_RS05570 10bcf4bce93c913f965d000cda7e57fe 861 PANTHER PTHR10799 463 702 3.1E-86 T 22-04-2016 PP4_RS05570 10bcf4bce93c913f965d000cda7e57fe 861 SMART SM00091 307 373 4.3E-8 T 22-04-2016 IPR000014 PAS domain PP4_RS22945 f4e9073ccd3249478a8a8f5237b78530 362 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 47 279 1.5E-15 T 22-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PP4_RS22945 f4e9073ccd3249478a8a8f5237b78530 362 SUPERFAMILY SSF111369 151 285 1.24E-12 T 22-04-2016 PP4_RS22945 f4e9073ccd3249478a8a8f5237b78530 362 Gene3D G3DSA:2.40.50.100 202 234 3.2E-15 T 22-04-2016 PP4_RS22945 f4e9073ccd3249478a8a8f5237b78530 362 Gene3D G3DSA:2.40.50.100 48 80 3.2E-15 T 22-04-2016 PP4_RS22945 f4e9073ccd3249478a8a8f5237b78530 362 SUPERFAMILY SSF111369 47 128 7.59E-9 T 22-04-2016 PP4_RS22945 f4e9073ccd3249478a8a8f5237b78530 362 PANTHER PTHR30367 15 362 5.1E-59 T 22-04-2016 PP4_RS22945 f4e9073ccd3249478a8a8f5237b78530 362 Pfam PF00529 HlyD membrane-fusion protein of T1SS 21 322 1.9E-7 T 22-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 PP4_RS17200 92f1e9447e2238c35236d8592616ce92 306 Gene3D G3DSA:3.40.190.10 180 262 1.5E-19 T 22-04-2016 PP4_RS17200 92f1e9447e2238c35236d8592616ce92 306 Gene3D G3DSA:1.10.10.10 7 84 1.6E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS17200 92f1e9447e2238c35236d8592616ce92 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 2.1E-20 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS17200 92f1e9447e2238c35236d8592616ce92 306 PANTHER PTHR30537:SF26 1 293 4.9E-84 T 22-04-2016 PP4_RS17200 92f1e9447e2238c35236d8592616ce92 306 SUPERFAMILY SSF53850 94 297 2.35E-29 T 22-04-2016 PP4_RS17200 92f1e9447e2238c35236d8592616ce92 306 SUPERFAMILY SSF46785 6 87 2.03E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS17200 92f1e9447e2238c35236d8592616ce92 306 Gene3D G3DSA:3.40.190.10 94 179 2.0E-16 T 22-04-2016 PP4_RS17200 92f1e9447e2238c35236d8592616ce92 306 PANTHER PTHR30537 1 293 4.9E-84 T 22-04-2016 PP4_RS17200 92f1e9447e2238c35236d8592616ce92 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 1.4E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS17200 92f1e9447e2238c35236d8592616ce92 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 1.4E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS17200 92f1e9447e2238c35236d8592616ce92 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 1.4E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS17200 92f1e9447e2238c35236d8592616ce92 306 Pfam PF03466 LysR substrate binding domain 91 291 4.5E-29 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS10315 35514fe391effe6154df9a37374e8705 408 Pfam PF00072 Response regulator receiver domain 10 118 5.2E-22 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS10315 35514fe391effe6154df9a37374e8705 408 SMART SM00448 7 121 3.0E-26 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS10315 35514fe391effe6154df9a37374e8705 408 Gene3D G3DSA:3.30.565.10 242 400 2.0E-44 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS10315 35514fe391effe6154df9a37374e8705 408 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 287 394 8.5E-24 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS10315 35514fe391effe6154df9a37374e8705 408 SUPERFAMILY SSF52172 7 163 2.7E-30 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS10315 35514fe391effe6154df9a37374e8705 408 SUPERFAMILY SSF47384 152 242 7.06E-15 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS10315 35514fe391effe6154df9a37374e8705 408 PANTHER PTHR24423 147 394 1.6E-58 T 22-04-2016 PP4_RS10315 35514fe391effe6154df9a37374e8705 408 PANTHER PTHR24423 9 16 1.6E-58 T 22-04-2016 PP4_RS10315 35514fe391effe6154df9a37374e8705 408 Gene3D G3DSA:1.10.287.130 161 237 2.5E-12 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS10315 35514fe391effe6154df9a37374e8705 408 SUPERFAMILY SSF55874 230 397 1.83E-43 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS10315 35514fe391effe6154df9a37374e8705 408 SMART SM00387 286 395 3.2E-31 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS10315 35514fe391effe6154df9a37374e8705 408 SMART SM00388 168 241 6.5E-11 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS10315 35514fe391effe6154df9a37374e8705 408 PRINTS PR00344 Bacterial sensor protein C-terminal signature 322 336 2.6E-15 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS10315 35514fe391effe6154df9a37374e8705 408 PRINTS PR00344 Bacterial sensor protein C-terminal signature 340 350 2.6E-15 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS10315 35514fe391effe6154df9a37374e8705 408 PRINTS PR00344 Bacterial sensor protein C-terminal signature 379 392 2.6E-15 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS10315 35514fe391effe6154df9a37374e8705 408 PRINTS PR00344 Bacterial sensor protein C-terminal signature 355 373 2.6E-15 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS10315 35514fe391effe6154df9a37374e8705 408 Gene3D G3DSA:3.40.50.2300 5 126 2.1E-28 T 22-04-2016 PP4_RS10315 35514fe391effe6154df9a37374e8705 408 Pfam PF00512 His Kinase A (phospho-acceptor) domain 168 241 8.5E-11 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS24990 c8a8a54ea3af2b33096713a53b6daecc 289 Pfam PF01145 SPFH domain / Band 7 family 24 200 1.0E-30 T 22-04-2016 IPR001107 Band 7 domain PP4_RS24990 c8a8a54ea3af2b33096713a53b6daecc 289 PRINTS PR00721 Stomatin signature 180 201 1.3E-7 T 22-04-2016 IPR001972 Stomatin family GO:0016020 PP4_RS24990 c8a8a54ea3af2b33096713a53b6daecc 289 PRINTS PR00721 Stomatin signature 161 179 1.3E-7 T 22-04-2016 IPR001972 Stomatin family GO:0016020 PP4_RS24990 c8a8a54ea3af2b33096713a53b6daecc 289 PRINTS PR00721 Stomatin signature 115 132 1.3E-7 T 22-04-2016 IPR001972 Stomatin family GO:0016020 PP4_RS24990 c8a8a54ea3af2b33096713a53b6daecc 289 PRINTS PR00721 Stomatin signature 28 50 1.3E-7 T 22-04-2016 IPR001972 Stomatin family GO:0016020 PP4_RS24990 c8a8a54ea3af2b33096713a53b6daecc 289 SUPERFAMILY SSF117892 53 192 8.11E-29 T 22-04-2016 IPR001107 Band 7 domain PP4_RS24990 c8a8a54ea3af2b33096713a53b6daecc 289 TIGRFAM TIGR01932 hflC: HflC protein 154 284 7.7E-46 T 22-04-2016 IPR010200 HflC GO:0016021|GO:0052547 PP4_RS24990 c8a8a54ea3af2b33096713a53b6daecc 289 PANTHER PTHR10264:SF80 4 287 8.7E-103 T 22-04-2016 PP4_RS24990 c8a8a54ea3af2b33096713a53b6daecc 289 SMART SM00244 21 185 3.8E-38 T 22-04-2016 IPR001107 Band 7 domain PP4_RS24990 c8a8a54ea3af2b33096713a53b6daecc 289 PIRSF PIRSF005651 1 289 7.5E-96 T 22-04-2016 IPR010200 HflC GO:0016021|GO:0052547 PP4_RS24990 c8a8a54ea3af2b33096713a53b6daecc 289 PANTHER PTHR10264 4 287 8.7E-103 T 22-04-2016 IPR001972 Stomatin family GO:0016020 PP4_RS20165 b8dfbbd9a6fa16fe0d8dd4081047adf1 364 SUPERFAMILY SSF55021 266 361 6.34E-28 T 22-04-2016 PP4_RS20165 b8dfbbd9a6fa16fe0d8dd4081047adf1 364 Pfam PF01842 ACT domain 282 346 2.1E-10 T 22-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 PP4_RS20165 b8dfbbd9a6fa16fe0d8dd4081047adf1 364 Pfam PF01817 Chorismate mutase type II 10 92 1.3E-21 T 22-04-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 PP4_RS20165 b8dfbbd9a6fa16fe0d8dd4081047adf1 364 PANTHER PTHR21022:SF0 3 360 6.1E-137 T 22-04-2016 PP4_RS20165 b8dfbbd9a6fa16fe0d8dd4081047adf1 364 Gene3D G3DSA:3.40.190.10 181 259 1.5E-30 T 22-04-2016 PP4_RS20165 b8dfbbd9a6fa16fe0d8dd4081047adf1 364 Gene3D G3DSA:1.20.59.10 2 91 2.1E-21 T 22-04-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 PP4_RS20165 b8dfbbd9a6fa16fe0d8dd4081047adf1 364 PANTHER PTHR21022 3 360 6.1E-137 T 22-04-2016 PP4_RS20165 b8dfbbd9a6fa16fe0d8dd4081047adf1 364 SUPERFAMILY SSF48600 5 97 3.51E-18 T 22-04-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 PP4_RS20165 b8dfbbd9a6fa16fe0d8dd4081047adf1 364 TIGRFAM TIGR01807 CM_P2: chorismate mutase 6 84 2.2E-31 T 22-04-2016 IPR010957 Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain GO:0004106|GO:0005737|GO:0009094 KEGG: 00400+5.4.99.5+4.2.1.51|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7432|MetaCyc: PWY-7626|UniPathway: UPA00120|UniPathway: UPA00121 PP4_RS20165 b8dfbbd9a6fa16fe0d8dd4081047adf1 364 ProSitePatterns PS00858 Prephenate dehydratase signature 2. 309 316 - T 22-04-2016 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 PP4_RS20165 b8dfbbd9a6fa16fe0d8dd4081047adf1 364 Pfam PF00800 Prephenate dehydratase 96 273 4.5E-62 T 22-04-2016 IPR001086 Prephenate dehydratase GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 PP4_RS20165 b8dfbbd9a6fa16fe0d8dd4081047adf1 364 SMART SM00830 10 94 5.2E-27 T 22-04-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 PP4_RS20165 b8dfbbd9a6fa16fe0d8dd4081047adf1 364 Gene3D G3DSA:3.30.70.260 275 362 5.4E-31 T 22-04-2016 PP4_RS20165 b8dfbbd9a6fa16fe0d8dd4081047adf1 364 SUPERFAMILY SSF53850 95 280 8.58E-61 T 22-04-2016 PP4_RS20165 b8dfbbd9a6fa16fe0d8dd4081047adf1 364 Gene3D G3DSA:3.40.190.10 92 180 2.6E-31 T 22-04-2016 PP4_RS20165 b8dfbbd9a6fa16fe0d8dd4081047adf1 364 PIRSF PIRSF001500 1 364 5.9E-146 T 22-04-2016 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase GO:0004106|GO:0004664|GO:0005737|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 PP4_RS20165 b8dfbbd9a6fa16fe0d8dd4081047adf1 364 ProSitePatterns PS00857 Prephenate dehydratase signature 1. 247 269 - T 22-04-2016 IPR018528 Prephenate dehydratase, conserved site GO:0004664|GO:0009094 KEGG: 00400+4.2.1.51|MetaCyc: PWY-7432|UniPathway: UPA00121 PP4_RS25080 aaac5ab12ffda152c07f09572dca1a53 404 SUPERFAMILY SSF56784 191 397 8.8E-54 T 22-04-2016 IPR023214 HAD-like domain PP4_RS25080 aaac5ab12ffda152c07f09572dca1a53 404 SUPERFAMILY SSF55021 2 83 2.22E-14 T 22-04-2016 PP4_RS25080 aaac5ab12ffda152c07f09572dca1a53 404 TIGRFAM TIGR00338 serB: phosphoserine phosphatase SerB 177 395 1.2E-79 T 22-04-2016 PP4_RS25080 aaac5ab12ffda152c07f09572dca1a53 404 Gene3D G3DSA:3.40.50.1000 253 382 1.1E-41 T 22-04-2016 IPR023214 HAD-like domain PP4_RS25080 aaac5ab12ffda152c07f09572dca1a53 404 PANTHER PTHR10000:SF7 186 401 4.1E-90 T 22-04-2016 PP4_RS25080 aaac5ab12ffda152c07f09572dca1a53 404 Gene3D G3DSA:3.30.70.260 3 89 4.6E-18 T 22-04-2016 PP4_RS25080 aaac5ab12ffda152c07f09572dca1a53 404 Gene3D G3DSA:3.30.70.260 112 192 3.5E-9 T 22-04-2016 PP4_RS25080 aaac5ab12ffda152c07f09572dca1a53 404 Pfam PF12710 haloacid dehalogenase-like hydrolase 193 360 3.6E-25 T 22-04-2016 PP4_RS25080 aaac5ab12ffda152c07f09572dca1a53 404 Pfam PF13740 ACT domain 3 78 2.6E-22 T 22-04-2016 PP4_RS25080 aaac5ab12ffda152c07f09572dca1a53 404 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 192 363 9.0E-34 T 22-04-2016 IPR006383 HAD-superfamily hydrolase, subfamily IB, PSPase-like GO:0008152|GO:0016791 PP4_RS25080 aaac5ab12ffda152c07f09572dca1a53 404 PANTHER PTHR10000 186 401 4.1E-90 T 22-04-2016 PP4_RS25080 aaac5ab12ffda152c07f09572dca1a53 404 Gene3D G3DSA:1.10.150.210 202 252 6.2E-26 T 22-04-2016 IPR023190 Phosphoserine phosphatase, domain 2 GO:0004647|GO:0006564 KEGG: 00260+3.1.3.3|KEGG: 00680+3.1.3.3|UniPathway: UPA00135 PP4_RS25600 c25c66bb9da730f929bf761d136b8a9b 207 PANTHER PTHR38693 6 205 3.4E-53 T 22-04-2016 PP4_RS25600 c25c66bb9da730f929bf761d136b8a9b 207 Pfam PF02036 SCP-2 sterol transfer family 14 111 3.7E-13 T 22-04-2016 IPR003033 SCP2 sterol-binding domain PP4_RS25600 c25c66bb9da730f929bf761d136b8a9b 207 PANTHER PTHR38693:SF1 6 205 3.4E-53 T 22-04-2016 PP4_RS25600 c25c66bb9da730f929bf761d136b8a9b 207 SUPERFAMILY SSF55718 17 119 4.71E-6 T 22-04-2016 IPR003033 SCP2 sterol-binding domain PP4_RS12585 b38d1c1d812390734ca014c968c56f12 303 Pfam PF03466 LysR substrate binding domain 97 297 1.5E-37 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS12585 b38d1c1d812390734ca014c968c56f12 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 62 8.6E-11 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS12585 b38d1c1d812390734ca014c968c56f12 303 PANTHER PTHR30346 5 297 2.5E-78 T 22-04-2016 PP4_RS12585 b38d1c1d812390734ca014c968c56f12 303 SUPERFAMILY SSF53850 97 293 6.52E-33 T 22-04-2016 PP4_RS12585 b38d1c1d812390734ca014c968c56f12 303 PANTHER PTHR30346:SF0 5 297 2.5E-78 T 22-04-2016 PP4_RS12585 b38d1c1d812390734ca014c968c56f12 303 Gene3D G3DSA:3.40.190.10 184 267 4.0E-26 T 22-04-2016 PP4_RS12585 b38d1c1d812390734ca014c968c56f12 303 Gene3D G3DSA:3.40.190.10 98 183 1.4E-12 T 22-04-2016 PP4_RS12585 b38d1c1d812390734ca014c968c56f12 303 Gene3D G3DSA:1.10.10.10 7 92 5.5E-16 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS12585 b38d1c1d812390734ca014c968c56f12 303 SUPERFAMILY SSF46785 7 88 5.89E-12 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS01595 fc7abd2a7c298928ea492ac184723265 355 ProSitePatterns PS01155 Endonuclease III family signature. 102 131 - T 22-04-2016 IPR004036 Endonuclease III-like, conserved site-2 Reactome: REACT_216 PP4_RS01595 fc7abd2a7c298928ea492ac184723265 355 Gene3D G3DSA:1.10.1670.10 123 223 1.7E-37 T 22-04-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal PP4_RS01595 fc7abd2a7c298928ea492ac184723265 355 SMART SM00478 39 190 6.8E-46 T 22-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 PP4_RS01595 fc7abd2a7c298928ea492ac184723265 355 SUPERFAMILY SSF48150 3 224 9.89E-76 T 22-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 PP4_RS01595 fc7abd2a7c298928ea492ac184723265 355 Pfam PF14815 NUDIX domain 237 343 9.5E-21 T 22-04-2016 IPR029119 MutY, C-terminal PP4_RS01595 fc7abd2a7c298928ea492ac184723265 355 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 35 165 7.3E-19 T 22-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 PP4_RS01595 fc7abd2a7c298928ea492ac184723265 355 SUPERFAMILY SSF55811 220 345 1.08E-23 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PP4_RS01595 fc7abd2a7c298928ea492ac184723265 355 Pfam PF00633 Helix-hairpin-helix motif 100 128 1.4E-9 T 22-04-2016 IPR000445 Helix-hairpin-helix motif GO:0003677 PP4_RS01595 fc7abd2a7c298928ea492ac184723265 355 Gene3D G3DSA:1.10.340.30 22 122 3.2E-45 T 22-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 PP4_RS01595 fc7abd2a7c298928ea492ac184723265 355 Gene3D G3DSA:3.90.79.10 231 347 5.6E-20 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PP4_RS01595 fc7abd2a7c298928ea492ac184723265 355 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 5 275 3.0E-111 T 22-04-2016 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 PP4_RS01595 fc7abd2a7c298928ea492ac184723265 355 PANTHER PTHR10359 4 342 3.9E-103 T 22-04-2016 PP4_RS23840 3da3f3dedbab1ebe7a3354defffc94dc 277 Gene3D G3DSA:3.40.190.10 145 200 4.0E-7 T 22-04-2016 PP4_RS23840 3da3f3dedbab1ebe7a3354defffc94dc 277 SUPERFAMILY SSF53850 39 262 9.06E-35 T 22-04-2016 PP4_RS23840 3da3f3dedbab1ebe7a3354defffc94dc 277 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 42 261 6.6E-32 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS23840 3da3f3dedbab1ebe7a3354defffc94dc 277 SMART SM00062 41 265 4.5E-16 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS23840 3da3f3dedbab1ebe7a3354defffc94dc 277 Gene3D G3DSA:3.40.190.10 37 144 2.3E-18 T 22-04-2016 PP4_RS25325 0dee1e943a87b86f8ee3f2285fd129e7 710 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 159 263 1.0E-5 T 22-04-2016 IPR000014 PAS domain PP4_RS25325 0dee1e943a87b86f8ee3f2285fd129e7 710 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 276 439 2.8E-38 T 22-04-2016 IPR000160 GGDEF domain PP4_RS25325 0dee1e943a87b86f8ee3f2285fd129e7 710 Pfam PF00563 EAL domain 458 692 2.7E-67 T 22-04-2016 IPR001633 EAL domain PP4_RS25325 0dee1e943a87b86f8ee3f2285fd129e7 710 SMART SM00448 17 131 4.8E-32 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS25325 0dee1e943a87b86f8ee3f2285fd129e7 710 SMART SM00052 451 697 5.6E-86 T 22-04-2016 IPR001633 EAL domain PP4_RS25325 0dee1e943a87b86f8ee3f2285fd129e7 710 Gene3D G3DSA:3.20.20.450 455 698 4.8E-81 T 22-04-2016 IPR001633 EAL domain PP4_RS25325 0dee1e943a87b86f8ee3f2285fd129e7 710 PANTHER PTHR10799:SF710 313 551 2.7E-65 T 22-04-2016 PP4_RS25325 0dee1e943a87b86f8ee3f2285fd129e7 710 PANTHER PTHR10799:SF710 18 144 2.7E-65 T 22-04-2016 PP4_RS25325 0dee1e943a87b86f8ee3f2285fd129e7 710 Pfam PF00989 PAS fold 159 206 1.1E-7 T 22-04-2016 IPR013767 PAS fold GO:0006355 PP4_RS25325 0dee1e943a87b86f8ee3f2285fd129e7 710 Gene3D G3DSA:3.30.450.20 150 265 5.8E-17 T 22-04-2016 PP4_RS25325 0dee1e943a87b86f8ee3f2285fd129e7 710 Pfam PF00072 Response regulator receiver domain 20 131 4.0E-25 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS25325 0dee1e943a87b86f8ee3f2285fd129e7 710 Gene3D G3DSA:3.30.70.270 282 447 6.9E-54 T 22-04-2016 PP4_RS25325 0dee1e943a87b86f8ee3f2285fd129e7 710 SUPERFAMILY SSF141868 456 698 1.44E-76 T 22-04-2016 IPR001633 EAL domain PP4_RS25325 0dee1e943a87b86f8ee3f2285fd129e7 710 SMART SM00267 269 441 4.7E-58 T 22-04-2016 IPR000160 GGDEF domain PP4_RS25325 0dee1e943a87b86f8ee3f2285fd129e7 710 SUPERFAMILY SSF55073 285 443 3.77E-47 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS25325 0dee1e943a87b86f8ee3f2285fd129e7 710 SUPERFAMILY SSF55785 145 264 6.81E-15 T 22-04-2016 IPR000014 PAS domain PP4_RS25325 0dee1e943a87b86f8ee3f2285fd129e7 710 SMART SM00091 156 223 4.5E-5 T 22-04-2016 IPR000014 PAS domain PP4_RS25325 0dee1e943a87b86f8ee3f2285fd129e7 710 Gene3D G3DSA:3.40.50.2300 16 143 4.0E-37 T 22-04-2016 PP4_RS25325 0dee1e943a87b86f8ee3f2285fd129e7 710 PANTHER PTHR10799 313 551 2.7E-65 T 22-04-2016 PP4_RS25325 0dee1e943a87b86f8ee3f2285fd129e7 710 PANTHER PTHR10799 18 144 2.7E-65 T 22-04-2016 PP4_RS25325 0dee1e943a87b86f8ee3f2285fd129e7 710 SUPERFAMILY SSF52172 19 170 3.27E-37 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS25325 0dee1e943a87b86f8ee3f2285fd129e7 710 Pfam PF00990 Diguanylate cyclase, GGDEF domain 280 437 9.5E-44 T 22-04-2016 IPR000160 GGDEF domain PP4_RS12755 eb39db7c68d4d2fb3b3627eda80368d0 362 PANTHER PTHR30222:SF11 20 360 1.9E-177 T 22-04-2016 PP4_RS12755 eb39db7c68d4d2fb3b3627eda80368d0 362 PANTHER PTHR30222 20 360 1.9E-177 T 22-04-2016 PP4_RS12755 eb39db7c68d4d2fb3b3627eda80368d0 362 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 211 230 1.4E-65 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS12755 eb39db7c68d4d2fb3b3627eda80368d0 362 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 121 137 1.4E-65 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS12755 eb39db7c68d4d2fb3b3627eda80368d0 362 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 151 165 1.4E-65 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS12755 eb39db7c68d4d2fb3b3627eda80368d0 362 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 261 280 1.4E-65 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS12755 eb39db7c68d4d2fb3b3627eda80368d0 362 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 174 193 1.4E-65 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS12755 eb39db7c68d4d2fb3b3627eda80368d0 362 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 88 101 1.4E-65 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS12755 eb39db7c68d4d2fb3b3627eda80368d0 362 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 306 332 1.4E-65 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS12755 eb39db7c68d4d2fb3b3627eda80368d0 362 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 72 86 1.4E-65 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS12755 eb39db7c68d4d2fb3b3627eda80368d0 362 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 45 66 1.4E-65 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS12755 eb39db7c68d4d2fb3b3627eda80368d0 362 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 29 45 1.4E-65 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS12755 eb39db7c68d4d2fb3b3627eda80368d0 362 PIRSF PIRSF019574 2 362 2.3E-136 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS12755 eb39db7c68d4d2fb3b3627eda80368d0 362 Gene3D G3DSA:3.40.190.10 44 136 5.2E-13 T 22-04-2016 PP4_RS12755 eb39db7c68d4d2fb3b3627eda80368d0 362 SUPERFAMILY SSF53850 26 360 1.31E-101 T 22-04-2016 PP4_RS12755 eb39db7c68d4d2fb3b3627eda80368d0 362 Gene3D G3DSA:3.40.190.10 137 310 8.3E-73 T 22-04-2016 PP4_RS12755 eb39db7c68d4d2fb3b3627eda80368d0 362 Pfam PF13416 Bacterial extracellular solute-binding protein 41 325 2.4E-39 T 22-04-2016 PP4_RS04580 02bc86f674a8219904b7081c99fdeffb 360 PANTHER PTHR22935 1 358 1.1E-59 T 22-04-2016 PP4_RS04580 02bc86f674a8219904b7081c99fdeffb 360 Gene3D G3DSA:3.40.710.10 51 355 5.5E-35 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS04580 02bc86f674a8219904b7081c99fdeffb 360 PANTHER PTHR22935:SF10 1 358 1.1E-59 T 22-04-2016 PP4_RS04580 02bc86f674a8219904b7081c99fdeffb 360 Pfam PF00144 Beta-lactamase 49 339 7.1E-29 T 22-04-2016 IPR001466 Beta-lactamase-related PP4_RS04580 02bc86f674a8219904b7081c99fdeffb 360 SUPERFAMILY SSF56601 6 350 3.18E-66 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS12555 eb5fa28e55ad37a889ddd6497149d10a 257 SUPERFAMILY SSF55781 84 255 1.31E-16 T 22-04-2016 IPR029016 GAF domain-like PP4_RS12555 eb5fa28e55ad37a889ddd6497149d10a 257 Gene3D G3DSA:1.10.10.10 5 69 2.7E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS12555 eb5fa28e55ad37a889ddd6497149d10a 257 PANTHER PTHR30136 5 255 7.1E-42 T 22-04-2016 PP4_RS12555 eb5fa28e55ad37a889ddd6497149d10a 257 Pfam PF09339 IclR helix-turn-helix domain 12 60 3.6E-15 T 22-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 PP4_RS12555 eb5fa28e55ad37a889ddd6497149d10a 257 Gene3D G3DSA:3.30.450.40 85 255 5.0E-18 T 22-04-2016 IPR029016 GAF domain-like PP4_RS12555 eb5fa28e55ad37a889ddd6497149d10a 257 SUPERFAMILY SSF46785 10 72 1.82E-11 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS12555 eb5fa28e55ad37a889ddd6497149d10a 257 PANTHER PTHR30136:SF3 5 255 7.1E-42 T 22-04-2016 PP4_RS12555 eb5fa28e55ad37a889ddd6497149d10a 257 SMART SM00346 10 99 2.1E-12 T 22-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 PP4_RS04320 d4d3bf632887e591662a6279d82c3b21 359 Hamap MF_00033 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 8 357 36.742 T 22-04-2016 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 PP4_RS04320 d4d3bf632887e591662a6279d82c3b21 359 TIGRFAM TIGR01133 murG: undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 4 352 1.4E-107 T 22-04-2016 IPR006009 N-acetylglucosaminyltransferase, MurG GO:0009252|GO:0050511 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 PP4_RS04320 d4d3bf632887e591662a6279d82c3b21 359 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 8 144 6.0E-42 T 22-04-2016 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 PP4_RS04320 d4d3bf632887e591662a6279d82c3b21 359 PANTHER PTHR21015 7 358 1.5E-119 T 22-04-2016 PP4_RS04320 d4d3bf632887e591662a6279d82c3b21 359 Gene3D G3DSA:3.40.50.2000 5 195 1.6E-70 T 22-04-2016 PP4_RS04320 d4d3bf632887e591662a6279d82c3b21 359 PANTHER PTHR21015:SF22 7 358 1.5E-119 T 22-04-2016 PP4_RS04320 d4d3bf632887e591662a6279d82c3b21 359 SUPERFAMILY SSF53756 6 357 3.32E-115 T 22-04-2016 PP4_RS04320 d4d3bf632887e591662a6279d82c3b21 359 Gene3D G3DSA:3.40.50.2000 255 327 8.2E-6 T 22-04-2016 PP4_RS04320 d4d3bf632887e591662a6279d82c3b21 359 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 185 336 2.9E-33 T 22-04-2016 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00052+2.4.1.22|KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 PP4_RS10765 ead1c7771a52090dfe81d025fcab549d 164 Gene3D G3DSA:3.40.630.30 6 133 1.1E-10 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS10765 ead1c7771a52090dfe81d025fcab549d 164 SUPERFAMILY SSF55729 8 133 1.89E-12 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS10765 ead1c7771a52090dfe81d025fcab549d 164 Pfam PF00583 Acetyltransferase (GNAT) family 66 111 2.3E-4 T 22-04-2016 IPR000182 GNAT domain GO:0008080 PP4_RS11630 49c748afeea20ad3a5716db4e72ed1fc 132 SUPERFAMILY SSF46955 6 121 2.56E-23 T 22-04-2016 IPR009061 Putative DNA-binding domain PP4_RS11630 49c748afeea20ad3a5716db4e72ed1fc 132 PANTHER PTHR30204:SF1 1 120 9.9E-21 T 22-04-2016 PP4_RS11630 49c748afeea20ad3a5716db4e72ed1fc 132 Gene3D G3DSA:1.10.1660.10 4 59 6.4E-20 T 22-04-2016 PP4_RS11630 49c748afeea20ad3a5716db4e72ed1fc 132 Gene3D G3DSA:1.10.1660.10 60 122 8.2E-17 T 22-04-2016 PP4_RS11630 49c748afeea20ad3a5716db4e72ed1fc 132 ProSitePatterns PS00552 MerR-type HTH domain signature. 9 31 - T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS11630 49c748afeea20ad3a5716db4e72ed1fc 132 PANTHER PTHR30204 1 120 9.9E-21 T 22-04-2016 PP4_RS11630 49c748afeea20ad3a5716db4e72ed1fc 132 SMART SM00422 6 73 5.9E-15 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS11630 49c748afeea20ad3a5716db4e72ed1fc 132 Pfam PF13411 MerR HTH family regulatory protein 6 71 5.3E-15 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS11110 25b325e1fc0d92c5c713b0fd5df8848f 186 SUPERFAMILY SSF69118 3 183 4.97E-45 T 22-04-2016 IPR029032 AhpD-like PP4_RS11110 25b325e1fc0d92c5c713b0fd5df8848f 186 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 59 106 3.5E-9 T 22-04-2016 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 PP4_RS11110 25b325e1fc0d92c5c713b0fd5df8848f 186 Gene3D G3DSA:1.20.1290.10 41 176 1.1E-24 T 22-04-2016 IPR029032 AhpD-like PP4_RS11110 25b325e1fc0d92c5c713b0fd5df8848f 186 PANTHER PTHR35446:SF1 3 183 2.6E-81 T 22-04-2016 PP4_RS11110 25b325e1fc0d92c5c713b0fd5df8848f 186 Gene3D G3DSA:1.20.5.810 10 40 4.2E-8 T 22-04-2016 PP4_RS11110 25b325e1fc0d92c5c713b0fd5df8848f 186 Pfam PF02627 Carboxymuconolactone decarboxylase family 54 111 2.6E-10 T 22-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 PP4_RS11110 25b325e1fc0d92c5c713b0fd5df8848f 186 PANTHER PTHR35446 3 183 2.6E-81 T 22-04-2016 PP4_RS02845 8e8a9f09401d04c74dc566c9333c7c85 158 Gene3D G3DSA:3.40.50.960 5 156 5.3E-65 T 22-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PP4_RS02845 8e8a9f09401d04c74dc566c9333c7c85 158 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 10 155 31.365 T 22-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PP4_RS02845 8e8a9f09401d04c74dc566c9333c7c85 158 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 16 151 1.9E-54 T 22-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PP4_RS02845 8e8a9f09401d04c74dc566c9333c7c85 158 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 16 152 6.8E-56 T 22-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PP4_RS02845 8e8a9f09401d04c74dc566c9333c7c85 158 SUPERFAMILY SSF52121 5 155 7.06E-62 T 22-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PP4_RS02845 8e8a9f09401d04c74dc566c9333c7c85 158 PANTHER PTHR21058 1 157 1.9E-76 T 22-04-2016 IPR002180 6,7-dimethyl-8-ribityllumazine synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PP4_RS23945 5d06bfe1cd247a9066521506c6c251b4 304 PRINTS PR01270 Histone deacetylase superfamily signature 225 235 1.1E-13 T 22-04-2016 IPR000286 Histone deacetylase superfamily PP4_RS23945 5d06bfe1cd247a9066521506c6c251b4 304 PRINTS PR01270 Histone deacetylase superfamily signature 151 166 1.1E-13 T 22-04-2016 IPR000286 Histone deacetylase superfamily PP4_RS23945 5d06bfe1cd247a9066521506c6c251b4 304 PRINTS PR01270 Histone deacetylase superfamily signature 117 140 1.1E-13 T 22-04-2016 IPR000286 Histone deacetylase superfamily PP4_RS23945 5d06bfe1cd247a9066521506c6c251b4 304 SUPERFAMILY SSF52768 2 284 8.63E-78 T 22-04-2016 PP4_RS23945 5d06bfe1cd247a9066521506c6c251b4 304 Pfam PF00850 Histone deacetylase domain 25 282 2.3E-46 T 22-04-2016 IPR023801 Histone deacetylase domain PP4_RS23945 5d06bfe1cd247a9066521506c6c251b4 304 PANTHER PTHR10625 1 286 6.5E-121 T 22-04-2016 IPR000286 Histone deacetylase superfamily PP4_RS23945 5d06bfe1cd247a9066521506c6c251b4 304 Gene3D G3DSA:3.40.800.20 3 281 9.8E-64 T 22-04-2016 IPR023801 Histone deacetylase domain PP4_RS23945 5d06bfe1cd247a9066521506c6c251b4 304 PANTHER PTHR10625:SF131 1 286 6.5E-121 T 22-04-2016 PP4_RS09750 f862cb7c0a08fb1385c9e4cfc9fd0d5e 338 PANTHER PTHR11538 92 338 5.1E-107 T 22-04-2016 PP4_RS09750 f862cb7c0a08fb1385c9e4cfc9fd0d5e 338 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 8 337 50.456 T 22-04-2016 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 PP4_RS09750 f862cb7c0a08fb1385c9e4cfc9fd0d5e 338 SUPERFAMILY SSF46589 13 99 1.41E-22 T 22-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 PP4_RS09750 f862cb7c0a08fb1385c9e4cfc9fd0d5e 338 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 20 87 8.9E-27 T 22-04-2016 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 PP4_RS09750 f862cb7c0a08fb1385c9e4cfc9fd0d5e 338 Pfam PF01409 tRNA synthetases class II core domain (F) 92 337 1.4E-107 T 22-04-2016 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 PP4_RS09750 f862cb7c0a08fb1385c9e4cfc9fd0d5e 338 Gene3D G3DSA:3.30.930.10 9 338 7.3E-132 T 22-04-2016 PP4_RS09750 f862cb7c0a08fb1385c9e4cfc9fd0d5e 338 SUPERFAMILY SSF55681 92 338 3.91E-80 T 22-04-2016 PP4_RS09750 f862cb7c0a08fb1385c9e4cfc9fd0d5e 338 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 38 337 2.5E-107 T 22-04-2016 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 PP4_RS01455 fae9ede71ae8b40d542bda22161325d3 604 SUPERFAMILY SSF103190 61 194 1.88E-20 T 22-04-2016 IPR029151 Periplasmic sensor domain-like PP4_RS01455 fae9ede71ae8b40d542bda22161325d3 604 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 482 588 3.0E-16 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS01455 fae9ede71ae8b40d542bda22161325d3 604 Gene3D G3DSA:3.30.565.10 440 587 4.2E-32 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS01455 fae9ede71ae8b40d542bda22161325d3 604 PANTHER PTHR24423 185 247 3.8E-136 T 22-04-2016 PP4_RS01455 fae9ede71ae8b40d542bda22161325d3 604 PANTHER PTHR24423 26 51 3.8E-136 T 22-04-2016 PP4_RS01455 fae9ede71ae8b40d542bda22161325d3 604 PANTHER PTHR24423 314 601 3.8E-136 T 22-04-2016 PP4_RS01455 fae9ede71ae8b40d542bda22161325d3 604 Gene3D G3DSA:1.10.287.130 372 434 3.3E-7 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS01455 fae9ede71ae8b40d542bda22161325d3 604 SMART SM00388 370 438 9.9E-8 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS01455 fae9ede71ae8b40d542bda22161325d3 604 SMART SM00387 480 591 2.3E-23 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS01455 fae9ede71ae8b40d542bda22161325d3 604 Pfam PF02743 Cache domain 39 268 1.9E-12 T 22-04-2016 IPR033479 Double Cache domain 1 PP4_RS01455 fae9ede71ae8b40d542bda22161325d3 604 PRINTS PR00344 Bacterial sensor protein C-terminal signature 551 569 9.4E-8 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS01455 fae9ede71ae8b40d542bda22161325d3 604 PRINTS PR00344 Bacterial sensor protein C-terminal signature 520 534 9.4E-8 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS01455 fae9ede71ae8b40d542bda22161325d3 604 PRINTS PR00344 Bacterial sensor protein C-terminal signature 538 548 9.4E-8 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS01455 fae9ede71ae8b40d542bda22161325d3 604 SUPERFAMILY SSF55874 425 589 1.83E-34 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS01455 fae9ede71ae8b40d542bda22161325d3 604 Gene3D G3DSA:3.30.450.20 93 184 6.0E-6 T 22-04-2016 PP4_RS01455 fae9ede71ae8b40d542bda22161325d3 604 PANTHER PTHR24423:SF469 185 247 3.8E-136 T 22-04-2016 PP4_RS01455 fae9ede71ae8b40d542bda22161325d3 604 PANTHER PTHR24423:SF469 26 51 3.8E-136 T 22-04-2016 PP4_RS01455 fae9ede71ae8b40d542bda22161325d3 604 PANTHER PTHR24423:SF469 314 601 3.8E-136 T 22-04-2016 PP4_RS01455 fae9ede71ae8b40d542bda22161325d3 604 SUPERFAMILY SSF47384 367 437 1.37E-11 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS01455 fae9ede71ae8b40d542bda22161325d3 604 Pfam PF00512 His Kinase A (phospho-acceptor) domain 371 436 4.2E-9 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS01455 fae9ede71ae8b40d542bda22161325d3 604 PIRSF PIRSF036431 4 597 7.2E-191 T 22-04-2016 IPR017055 Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator) PP4_RS03190 5eee147142b7b9a0de154f9fa1e7fe14 577 SUPERFAMILY SSF82185 124 238 2.22E-26 T 22-04-2016 PP4_RS03190 5eee147142b7b9a0de154f9fa1e7fe14 577 SUPERFAMILY SSF82185 30 123 1.02E-17 T 22-04-2016 PP4_RS03190 5eee147142b7b9a0de154f9fa1e7fe14 577 SMART SM00698 33 54 10.0 T 22-04-2016 IPR003409 MORN motif PP4_RS03190 5eee147142b7b9a0de154f9fa1e7fe14 577 SMART SM00698 261 282 1.6 T 22-04-2016 IPR003409 MORN motif PP4_RS03190 5eee147142b7b9a0de154f9fa1e7fe14 577 SMART SM00698 101 122 0.14 T 22-04-2016 IPR003409 MORN motif PP4_RS03190 5eee147142b7b9a0de154f9fa1e7fe14 577 SMART SM00698 123 144 1.3 T 22-04-2016 IPR003409 MORN motif PP4_RS03190 5eee147142b7b9a0de154f9fa1e7fe14 577 SMART SM00698 215 236 58.0 T 22-04-2016 IPR003409 MORN motif PP4_RS03190 5eee147142b7b9a0de154f9fa1e7fe14 577 SMART SM00698 169 190 26.0 T 22-04-2016 IPR003409 MORN motif PP4_RS03190 5eee147142b7b9a0de154f9fa1e7fe14 577 SMART SM00698 146 167 5.5 T 22-04-2016 IPR003409 MORN motif PP4_RS03190 5eee147142b7b9a0de154f9fa1e7fe14 577 SMART SM00698 238 259 5.7 T 22-04-2016 IPR003409 MORN motif PP4_RS03190 5eee147142b7b9a0de154f9fa1e7fe14 577 SMART SM00698 192 213 0.17 T 22-04-2016 IPR003409 MORN motif PP4_RS03190 5eee147142b7b9a0de154f9fa1e7fe14 577 SMART SM00698 79 100 0.6 T 22-04-2016 IPR003409 MORN motif PP4_RS03190 5eee147142b7b9a0de154f9fa1e7fe14 577 Gene3D G3DSA:3.40.50.1460 353 474 2.2E-6 T 22-04-2016 IPR029030 Caspase-like domain PP4_RS03190 5eee147142b7b9a0de154f9fa1e7fe14 577 SUPERFAMILY SSF52129 385 524 1.26E-6 T 22-04-2016 IPR029030 Caspase-like domain PP4_RS03190 5eee147142b7b9a0de154f9fa1e7fe14 577 PANTHER PTHR23084:SF162 31 399 1.5E-56 T 22-04-2016 PP4_RS03190 5eee147142b7b9a0de154f9fa1e7fe14 577 Pfam PF01650 Peptidase C13 family 336 540 1.6E-48 T 22-04-2016 IPR001096 Peptidase C13, legumain GO:0006508|GO:0008233 PP4_RS03190 5eee147142b7b9a0de154f9fa1e7fe14 577 PANTHER PTHR23084 31 399 1.5E-56 T 22-04-2016 PP4_RS03190 5eee147142b7b9a0de154f9fa1e7fe14 577 Pfam PF02493 MORN repeat 263 284 0.0069 T 22-04-2016 IPR003409 MORN motif PP4_RS03190 5eee147142b7b9a0de154f9fa1e7fe14 577 Pfam PF02493 MORN repeat 105 123 0.22 T 22-04-2016 IPR003409 MORN motif PP4_RS03190 5eee147142b7b9a0de154f9fa1e7fe14 577 Pfam PF02493 MORN repeat 171 191 0.0052 T 22-04-2016 IPR003409 MORN motif PP4_RS03190 5eee147142b7b9a0de154f9fa1e7fe14 577 Pfam PF02493 MORN repeat 81 97 2.5 T 22-04-2016 IPR003409 MORN motif PP4_RS03190 5eee147142b7b9a0de154f9fa1e7fe14 577 Pfam PF02493 MORN repeat 240 261 13.0 T 22-04-2016 IPR003409 MORN motif PP4_RS03190 5eee147142b7b9a0de154f9fa1e7fe14 577 Pfam PF02493 MORN repeat 148 169 0.09 T 22-04-2016 IPR003409 MORN motif PP4_RS03190 5eee147142b7b9a0de154f9fa1e7fe14 577 Pfam PF02493 MORN repeat 35 56 0.014 T 22-04-2016 IPR003409 MORN motif PP4_RS03190 5eee147142b7b9a0de154f9fa1e7fe14 577 Pfam PF02493 MORN repeat 58 79 0.81 T 22-04-2016 IPR003409 MORN motif PP4_RS03190 5eee147142b7b9a0de154f9fa1e7fe14 577 Pfam PF02493 MORN repeat 194 216 3.4E-4 T 22-04-2016 IPR003409 MORN motif PP4_RS03190 5eee147142b7b9a0de154f9fa1e7fe14 577 Pfam PF02493 MORN repeat 125 147 0.019 T 22-04-2016 IPR003409 MORN motif PP4_RS03190 5eee147142b7b9a0de154f9fa1e7fe14 577 Pfam PF02493 MORN repeat 218 238 0.09 T 22-04-2016 IPR003409 MORN motif PP4_RS03190 5eee147142b7b9a0de154f9fa1e7fe14 577 Gene3D G3DSA:2.20.110.10 112 194 8.9E-23 T 22-04-2016 PP4_RS03190 5eee147142b7b9a0de154f9fa1e7fe14 577 Gene3D G3DSA:2.20.110.10 29 111 1.5E-17 T 22-04-2016 PP4_RS03190 5eee147142b7b9a0de154f9fa1e7fe14 577 Gene3D G3DSA:2.20.110.10 195 295 1.4E-23 T 22-04-2016 PP4_RS06130 44e0aae9e6b76b88ad9ab02c0aa569fc 295 Gene3D G3DSA:1.10.10.10 1 84 2.5E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS06130 44e0aae9e6b76b88ad9ab02c0aa569fc 295 Gene3D G3DSA:3.40.190.10 89 191 1.1E-12 T 22-04-2016 PP4_RS06130 44e0aae9e6b76b88ad9ab02c0aa569fc 295 Gene3D G3DSA:3.40.190.10 192 261 3.9E-11 T 22-04-2016 PP4_RS06130 44e0aae9e6b76b88ad9ab02c0aa569fc 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.2E-13 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS06130 44e0aae9e6b76b88ad9ab02c0aa569fc 295 PANTHER PTHR30293:SF0 1 291 2.3E-87 T 22-04-2016 PP4_RS06130 44e0aae9e6b76b88ad9ab02c0aa569fc 295 SUPERFAMILY SSF46785 1 86 2.16E-17 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS06130 44e0aae9e6b76b88ad9ab02c0aa569fc 295 SUPERFAMILY SSF53850 88 293 2.71E-31 T 22-04-2016 PP4_RS06130 44e0aae9e6b76b88ad9ab02c0aa569fc 295 PANTHER PTHR30293 1 291 2.3E-87 T 22-04-2016 PP4_RS06130 44e0aae9e6b76b88ad9ab02c0aa569fc 295 Pfam PF03466 LysR substrate binding domain 87 290 1.6E-29 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS11810 72ce0645f38584687d610604a5cf047d 525 Gene3D G3DSA:3.40.50.300 355 516 5.6E-26 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS11810 72ce0645f38584687d610604a5cf047d 525 Gene3D G3DSA:3.40.50.300 12 262 5.1E-33 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS11810 72ce0645f38584687d610604a5cf047d 525 PANTHER PTHR19211 314 523 4.8E-155 T 22-04-2016 PP4_RS11810 72ce0645f38584687d610604a5cf047d 525 PANTHER PTHR19211 1 297 4.8E-155 T 22-04-2016 PP4_RS11810 72ce0645f38584687d610604a5cf047d 525 PANTHER PTHR19211:SF6 314 523 4.8E-155 T 22-04-2016 PP4_RS11810 72ce0645f38584687d610604a5cf047d 525 PANTHER PTHR19211:SF6 1 297 4.8E-155 T 22-04-2016 PP4_RS11810 72ce0645f38584687d610604a5cf047d 525 Pfam PF00005 ABC transporter 355 482 1.1E-15 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS11810 72ce0645f38584687d610604a5cf047d 525 Pfam PF00005 ABC transporter 32 171 1.5E-15 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS11810 72ce0645f38584687d610604a5cf047d 525 SUPERFAMILY SSF52540 6 244 4.33E-35 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS11810 72ce0645f38584687d610604a5cf047d 525 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS11810 72ce0645f38584687d610604a5cf047d 525 ProSitePatterns PS00211 ABC transporters family signature. 453 467 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS11810 72ce0645f38584687d610604a5cf047d 525 SMART SM00382 31 216 5.8E-9 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS11810 72ce0645f38584687d610604a5cf047d 525 SMART SM00382 362 525 3.3E-13 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS11810 72ce0645f38584687d610604a5cf047d 525 SUPERFAMILY SSF52540 353 515 9.14E-29 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS13790 8a0fd11fecb6f94de0f88f410885996c 256 SMART SM00382 31 224 6.0E-16 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS13790 8a0fd11fecb6f94de0f88f410885996c 256 PANTHER PTHR24220:SF327 8 252 1.0E-123 T 22-04-2016 PP4_RS13790 8a0fd11fecb6f94de0f88f410885996c 256 PIRSF PIRSF039085 3 252 3.7E-109 T 22-04-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 PP4_RS13790 8a0fd11fecb6f94de0f88f410885996c 256 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS13790 8a0fd11fecb6f94de0f88f410885996c 256 PANTHER PTHR24220 8 252 1.0E-123 T 22-04-2016 PP4_RS13790 8a0fd11fecb6f94de0f88f410885996c 256 Pfam PF00005 ABC transporter 22 176 3.2E-36 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS13790 8a0fd11fecb6f94de0f88f410885996c 256 Gene3D G3DSA:3.40.50.300 5 248 1.5E-79 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS13790 8a0fd11fecb6f94de0f88f410885996c 256 SUPERFAMILY SSF52540 6 246 2.28E-74 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS04715 60f767813f0b380970c827f510a82a0d 450 PANTHER PTHR11444 1 444 6.4E-213 T 22-04-2016 IPR000362 Fumarate lyase family PP4_RS04715 60f767813f0b380970c827f510a82a0d 450 PANTHER PTHR11444:SF21 1 444 6.4E-213 T 22-04-2016 PP4_RS04715 60f767813f0b380970c827f510a82a0d 450 ProSitePatterns PS00163 Fumarate lyases signature. 275 284 - T 22-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 PP4_RS04715 60f767813f0b380970c827f510a82a0d 450 Gene3D G3DSA:1.10.275.10 9 102 3.1E-33 T 22-04-2016 IPR024083 Fumarase/histidase, N-terminal PP4_RS04715 60f767813f0b380970c827f510a82a0d 450 PRINTS PR00149 Fumarate lyase superfamily signature 145 163 3.57E-26 T 22-04-2016 IPR000362 Fumarate lyase family PP4_RS04715 60f767813f0b380970c827f510a82a0d 450 PRINTS PR00149 Fumarate lyase superfamily signature 100 118 3.57E-26 T 22-04-2016 IPR000362 Fumarate lyase family PP4_RS04715 60f767813f0b380970c827f510a82a0d 450 PRINTS PR00149 Fumarate lyase superfamily signature 275 291 3.57E-26 T 22-04-2016 IPR000362 Fumarate lyase family PP4_RS04715 60f767813f0b380970c827f510a82a0d 450 PRINTS PR00149 Fumarate lyase superfamily signature 230 257 3.57E-26 T 22-04-2016 IPR000362 Fumarate lyase family PP4_RS04715 60f767813f0b380970c827f510a82a0d 450 PRINTS PR00145 Argininosuccinate lyase family signature 230 254 1.69E-12 T 22-04-2016 PP4_RS04715 60f767813f0b380970c827f510a82a0d 450 PRINTS PR00145 Argininosuccinate lyase family signature 140 160 1.69E-12 T 22-04-2016 PP4_RS04715 60f767813f0b380970c827f510a82a0d 450 PRINTS PR00145 Argininosuccinate lyase family signature 275 291 1.69E-12 T 22-04-2016 PP4_RS04715 60f767813f0b380970c827f510a82a0d 450 PRINTS PR00145 Argininosuccinate lyase family signature 99 121 1.69E-12 T 22-04-2016 PP4_RS04715 60f767813f0b380970c827f510a82a0d 450 SMART SM00998 363 442 1.3E-26 T 22-04-2016 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 PP4_RS04715 60f767813f0b380970c827f510a82a0d 450 Gene3D G3DSA:1.10.40.30 370 442 3.3E-29 T 22-04-2016 PP4_RS04715 60f767813f0b380970c827f510a82a0d 450 Pfam PF10397 Adenylosuccinate lyase C-terminus 364 441 1.1E-18 T 22-04-2016 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00075 PP4_RS04715 60f767813f0b380970c827f510a82a0d 450 Gene3D G3DSA:1.20.200.10 103 369 4.0E-90 T 22-04-2016 PP4_RS04715 60f767813f0b380970c827f510a82a0d 450 TIGRFAM TIGR02426 protocat_pcaB: 3-carboxy-cis,cis-muconate cycloisomerase 5 348 6.1E-149 T 22-04-2016 IPR012789 3-carboxy-cis,cis-muconate cycloisomerase GO:0019619|GO:0047472 KEGG: 00362+5.5.1.2 PP4_RS04715 60f767813f0b380970c827f510a82a0d 450 Pfam PF00206 Lyase 11 300 3.3E-79 T 22-04-2016 IPR022761 Fumarate lyase, N-terminal PP4_RS04715 60f767813f0b380970c827f510a82a0d 450 SUPERFAMILY SSF48557 5 446 7.07E-129 T 22-04-2016 IPR008948 L-Aspartase-like GO:0003824 PP4_RS07505 f0461c8114a304e6874d44ed0bad639d 591 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 5 172 5.1E-53 T 22-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 PP4_RS07505 f0461c8114a304e6874d44ed0bad639d 591 Gene3D G3DSA:3.40.50.970 362 575 4.4E-57 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS07505 f0461c8114a304e6874d44ed0bad639d 591 TIGRFAM TIGR01504 glyox_carbo_lig: glyoxylate carboligase 3 590 0.0 T 22-04-2016 IPR006397 Glyoxylate carboligase GO:0009028|GO:0009436 KEGG: 00630+4.1.1.47|UniPathway: UPA00864 PP4_RS07505 f0461c8114a304e6874d44ed0bad639d 591 Gene3D G3DSA:3.40.50.1220 187 361 3.0E-49 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain PP4_RS07505 f0461c8114a304e6874d44ed0bad639d 591 PANTHER PTHR18968:SF14 1 587 0.0 T 22-04-2016 IPR006397 Glyoxylate carboligase GO:0009028|GO:0009436 KEGG: 00630+4.1.1.47|UniPathway: UPA00864 PP4_RS07505 f0461c8114a304e6874d44ed0bad639d 591 SUPERFAMILY SSF52518 3 181 2.41E-49 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS07505 f0461c8114a304e6874d44ed0bad639d 591 Gene3D G3DSA:3.40.50.970 2 180 1.8E-60 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS07505 f0461c8114a304e6874d44ed0bad639d 591 SUPERFAMILY SSF52518 369 568 7.92E-50 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS07505 f0461c8114a304e6874d44ed0bad639d 591 SUPERFAMILY SSF52467 161 350 7.12E-46 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain PP4_RS07505 f0461c8114a304e6874d44ed0bad639d 591 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 393 553 2.9E-32 T 22-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 PP4_RS07505 f0461c8114a304e6874d44ed0bad639d 591 PANTHER PTHR18968 1 587 0.0 T 22-04-2016 PP4_RS07505 f0461c8114a304e6874d44ed0bad639d 591 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 194 327 1.8E-34 T 22-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 PP4_RS08655 0c067686cf8053114773edc5041d1176 672 SUPERFAMILY SSF51445 202 574 2.41E-90 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily PP4_RS08655 0c067686cf8053114773edc5041d1176 672 PANTHER PTHR10357:SF137 23 155 3.6E-254 T 22-04-2016 PP4_RS08655 0c067686cf8053114773edc5041d1176 672 PANTHER PTHR10357:SF137 185 669 3.6E-254 T 22-04-2016 PP4_RS08655 0c067686cf8053114773edc5041d1176 672 Gene3D G3DSA:3.20.20.80 212 571 1.9E-73 T 22-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PP4_RS08655 0c067686cf8053114773edc5041d1176 672 Hamap MF_02124 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase [glgE]. 28 670 46.317 T 22-04-2016 IPR026585 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase GO:0016757 KEGG: 00500+2.4.99.16 PP4_RS08655 0c067686cf8053114773edc5041d1176 672 SMART SM00642 222 567 5.2E-6 T 22-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 PP4_RS08655 0c067686cf8053114773edc5041d1176 672 PANTHER PTHR10357 23 155 3.6E-254 T 22-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 PP4_RS08655 0c067686cf8053114773edc5041d1176 672 PANTHER PTHR10357 185 669 3.6E-254 T 22-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 PP4_RS08655 0c067686cf8053114773edc5041d1176 672 Pfam PF11896 Domain of unknown function (DUF3416) 31 212 6.1E-51 T 22-04-2016 IPR021828 Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase, domain N/S GO:0004553 KEGG: 00500+2.4.99.16 PP4_RS08655 0c067686cf8053114773edc5041d1176 672 Pfam PF00128 Alpha amylase, catalytic domain 236 341 1.1E-7 T 22-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 PP4_RS15660 a7ddc1a1ff3cfce0dc12a04ac1a384ca 438 SUPERFAMILY SSF56935 37 438 1.34E-68 T 22-04-2016 PP4_RS15660 a7ddc1a1ff3cfce0dc12a04ac1a384ca 438 PANTHER PTHR35093 12 438 7.4E-77 T 22-04-2016 PP4_RS15660 a7ddc1a1ff3cfce0dc12a04ac1a384ca 438 PANTHER PTHR35093:SF2 12 438 7.4E-77 T 22-04-2016 PP4_RS15660 a7ddc1a1ff3cfce0dc12a04ac1a384ca 438 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 32 426 3.6E-77 T 22-04-2016 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) PP4_RS15660 a7ddc1a1ff3cfce0dc12a04ac1a384ca 438 Gene3D G3DSA:2.40.160.60 35 438 4.7E-98 T 22-04-2016 PP4_RS00350 a4a59a838347c6441cbe4c1cc52a09b2 299 PANTHER PTHR30537 1 296 6.2E-110 T 22-04-2016 PP4_RS00350 a4a59a838347c6441cbe4c1cc52a09b2 299 Gene3D G3DSA:3.40.190.10 180 266 3.2E-17 T 22-04-2016 PP4_RS00350 a4a59a838347c6441cbe4c1cc52a09b2 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 69 1.3E-21 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS00350 a4a59a838347c6441cbe4c1cc52a09b2 299 Gene3D G3DSA:3.40.190.10 97 179 4.8E-27 T 22-04-2016 PP4_RS00350 a4a59a838347c6441cbe4c1cc52a09b2 299 SUPERFAMILY SSF53850 93 296 1.81E-35 T 22-04-2016 PP4_RS00350 a4a59a838347c6441cbe4c1cc52a09b2 299 TIGRFAM TIGR03418 chol_sulf_TF: putative choline sulfate-utilization transcription factor 8 296 9.7E-137 T 22-04-2016 IPR017786 Transcription factor, choline sulphate-utilisation, putative PP4_RS00350 a4a59a838347c6441cbe4c1cc52a09b2 299 PANTHER PTHR30537:SF22 1 296 6.2E-110 T 22-04-2016 PP4_RS00350 a4a59a838347c6441cbe4c1cc52a09b2 299 SUPERFAMILY SSF46785 8 88 4.3E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS00350 a4a59a838347c6441cbe4c1cc52a09b2 299 Pfam PF03466 LysR substrate binding domain 92 296 6.5E-36 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS00350 a4a59a838347c6441cbe4c1cc52a09b2 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 1.2E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS00350 a4a59a838347c6441cbe4c1cc52a09b2 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 1.2E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS00350 a4a59a838347c6441cbe4c1cc52a09b2 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 1.2E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS00350 a4a59a838347c6441cbe4c1cc52a09b2 299 Gene3D G3DSA:1.10.10.10 3 88 1.9E-26 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS20375 cd64f56d3fdd9de40624a741f9d4244f 84 Hamap MF_00262 Cell division topological specificity factor [minE]. 3 84 19.969 T 22-04-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 PP4_RS20375 cd64f56d3fdd9de40624a741f9d4244f 84 Pfam PF03776 Septum formation topological specificity factor MinE 15 82 3.1E-26 T 22-04-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 PP4_RS20375 cd64f56d3fdd9de40624a741f9d4244f 84 PANTHER PTHR33404 1 83 1.7E-28 T 22-04-2016 PP4_RS20375 cd64f56d3fdd9de40624a741f9d4244f 84 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 1 83 5.6E-35 T 22-04-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 PP4_RS20375 cd64f56d3fdd9de40624a741f9d4244f 84 SUPERFAMILY SSF55229 33 83 8.63E-17 T 22-04-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 PP4_RS20375 cd64f56d3fdd9de40624a741f9d4244f 84 Gene3D G3DSA:3.30.1070.10 33 83 6.3E-22 T 22-04-2016 IPR005527 Septum formation topological specificity factor MinE GO:0032955|GO:0051301 PP4_RS04980 7879677c213bb9656c11d0811425078e 321 Gene3D G3DSA:2.50.20.10 120 186 6.6E-7 T 22-04-2016 PP4_RS04980 7879677c213bb9656c11d0811425078e 321 PANTHER PTHR38782 1 318 5.8E-88 T 22-04-2016 PP4_RS04980 7879677c213bb9656c11d0811425078e 321 PIRSF PIRSF005427 1 319 2.7E-87 T 22-04-2016 IPR005588 MucB/RseB PP4_RS04980 7879677c213bb9656c11d0811425078e 321 Pfam PF17188 MucB/RseB C-terminal domain 216 312 1.1E-25 T 22-04-2016 IPR033436 MucB/RseB, C-terminal PP4_RS04980 7879677c213bb9656c11d0811425078e 321 PANTHER PTHR38782:SF1 1 318 5.8E-88 T 22-04-2016 PP4_RS04980 7879677c213bb9656c11d0811425078e 321 Pfam PF03888 MucB/RseB N-terminal domain 28 198 1.3E-52 T 22-04-2016 IPR033434 MucB/RseB, N-terminal PP4_RS14645 c3954bc60077c80d88a33148d3a38774 500 ProSitePatterns PS00216 Sugar transport proteins signature 1. 316 333 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PP4_RS14645 c3954bc60077c80d88a33148d3a38774 500 Pfam PF08946 Osmosensory transporter coiled coil 455 500 2.6E-21 T 22-04-2016 IPR015041 Osmosensory transporter coiled coil PP4_RS14645 c3954bc60077c80d88a33148d3a38774 500 PANTHER PTHR23508:SF17 4 463 4.9E-268 T 22-04-2016 PP4_RS14645 c3954bc60077c80d88a33148d3a38774 500 SUPERFAMILY SSF103661 466 498 3.79E-12 T 22-04-2016 PP4_RS14645 c3954bc60077c80d88a33148d3a38774 500 Pfam PF00083 Sugar (and other) transporter 29 448 1.7E-66 T 22-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 PP4_RS14645 c3954bc60077c80d88a33148d3a38774 500 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 34 433 6.1E-143 T 22-04-2016 IPR004736 Citrate-proton symport GO:0005215|GO:0006810|GO:0016021 PP4_RS14645 c3954bc60077c80d88a33148d3a38774 500 Gene3D G3DSA:1.20.1250.20 25 230 6.6E-23 T 22-04-2016 PP4_RS14645 c3954bc60077c80d88a33148d3a38774 500 Gene3D G3DSA:1.20.1250.20 259 445 2.7E-28 T 22-04-2016 PP4_RS14645 c3954bc60077c80d88a33148d3a38774 500 PANTHER PTHR23508 4 463 4.9E-268 T 22-04-2016 PP4_RS14645 c3954bc60077c80d88a33148d3a38774 500 SUPERFAMILY SSF103473 25 441 1.44E-70 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS14645 c3954bc60077c80d88a33148d3a38774 500 Gene3D G3DSA:1.10.1660.10 454 494 4.0E-4 T 22-04-2016 PP4_RS23935 7602e6f34b8cfc5b895b9c0399a9d2d3 189 Gene3D G3DSA:3.40.630.30 2 185 5.7E-50 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS23935 7602e6f34b8cfc5b895b9c0399a9d2d3 189 Pfam PF13302 Acetyltransferase (GNAT) domain 11 152 4.6E-31 T 22-04-2016 IPR000182 GNAT domain GO:0008080 PP4_RS23935 7602e6f34b8cfc5b895b9c0399a9d2d3 189 PANTHER PTHR13256 5 185 2.3E-50 T 22-04-2016 PP4_RS23935 7602e6f34b8cfc5b895b9c0399a9d2d3 189 PANTHER PTHR13256:SF19 5 185 2.3E-50 T 22-04-2016 PP4_RS23935 7602e6f34b8cfc5b895b9c0399a9d2d3 189 SUPERFAMILY SSF55729 1 164 6.99E-38 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS04335 1970af2516a183ca724ba1ed26c4b0c6 289 Pfam PF08478 POTRA domain, FtsQ-type 74 142 3.1E-18 T 22-04-2016 IPR013685 Polypeptide-transport-associated, FtsQ-type PP4_RS04335 1970af2516a183ca724ba1ed26c4b0c6 289 PANTHER PTHR35851 1 289 2.7E-66 T 22-04-2016 PP4_RS04335 1970af2516a183ca724ba1ed26c4b0c6 289 Pfam PF03799 Cell division protein FtsQ 146 264 5.1E-21 T 22-04-2016 IPR005548 Cell division protein FtsQ/DivIB PP4_RS04335 1970af2516a183ca724ba1ed26c4b0c6 289 Hamap MF_00911 Cell division protein FtsQ [ftsQ]. 43 272 23.083 T 22-04-2016 IPR026579 Cell division protein FtsQ GO:0000917 PP4_RS04335 1970af2516a183ca724ba1ed26c4b0c6 289 PANTHER PTHR35851:SF1 1 289 2.7E-66 T 22-04-2016 PP4_RS18470 27f4c91a3bb283e60a0a31c0a2a76131 407 Gene3D G3DSA:2.30.40.10 5 63 2.2E-8 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PP4_RS18470 27f4c91a3bb283e60a0a31c0a2a76131 407 SUPERFAMILY SSF51338 358 383 1.98E-11 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PP4_RS18470 27f4c91a3bb283e60a0a31c0a2a76131 407 SUPERFAMILY SSF51338 1 51 1.98E-11 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PP4_RS18470 27f4c91a3bb283e60a0a31c0a2a76131 407 PANTHER PTHR32027 1 397 1.1E-101 T 22-04-2016 PP4_RS18470 27f4c91a3bb283e60a0a31c0a2a76131 407 SUPERFAMILY SSF51556 51 367 1.31E-86 T 22-04-2016 IPR032466 Metal-dependent hydrolase PP4_RS18470 27f4c91a3bb283e60a0a31c0a2a76131 407 PANTHER PTHR32027:SF0 1 397 1.1E-101 T 22-04-2016 PP4_RS18470 27f4c91a3bb283e60a0a31c0a2a76131 407 Gene3D G3DSA:2.30.40.10 348 376 1.4E-6 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PP4_RS18470 27f4c91a3bb283e60a0a31c0a2a76131 407 Pfam PF07969 Amidohydrolase family 79 396 5.3E-21 T 22-04-2016 IPR013108 Amidohydrolase 3 PP4_RS18470 27f4c91a3bb283e60a0a31c0a2a76131 407 Gene3D G3DSA:3.20.20.140 64 347 9.6E-100 T 22-04-2016 PP4_RS18660 fa860b4e2a14cdeed0ef80f68b02846d 158 PANTHER PTHR35369 1 156 6.9E-18 T 22-04-2016 PP4_RS18660 fa860b4e2a14cdeed0ef80f68b02846d 158 Gene3D G3DSA:3.40.50.300 42 156 1.6E-31 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS18660 fa860b4e2a14cdeed0ef80f68b02846d 158 Pfam PF03846 Cell division inhibitor SulA 32 130 7.6E-9 T 22-04-2016 IPR004596 Cell division suppressor protein, SulA GO:0009276|GO:0009432|GO:0051782 PP4_RS18660 fa860b4e2a14cdeed0ef80f68b02846d 158 SUPERFAMILY SSF52540 42 156 6.9E-29 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23790 ad857553312dbba4b72a69b936943af7 255 SUPERFAMILY SSF48008 97 239 1.23E-23 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PP4_RS23790 ad857553312dbba4b72a69b936943af7 255 PANTHER PTHR11751:SF355 93 115 1.0E-41 T 22-04-2016 PP4_RS23790 ad857553312dbba4b72a69b936943af7 255 PANTHER PTHR11751:SF355 12 77 1.0E-41 T 22-04-2016 PP4_RS23790 ad857553312dbba4b72a69b936943af7 255 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 74 1.1E-22 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS23790 ad857553312dbba4b72a69b936943af7 255 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 3.7E-11 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS23790 ad857553312dbba4b72a69b936943af7 255 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 3.7E-11 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS23790 ad857553312dbba4b72a69b936943af7 255 Gene3D G3DSA:1.10.10.10 7 76 2.0E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS23790 ad857553312dbba4b72a69b936943af7 255 SUPERFAMILY SSF46785 4 77 1.64E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS23790 ad857553312dbba4b72a69b936943af7 255 Gene3D G3DSA:1.20.120.530 93 242 9.2E-24 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PP4_RS23790 ad857553312dbba4b72a69b936943af7 255 SMART SM00895 99 231 1.1E-20 T 22-04-2016 IPR011711 GntR, C-terminal PP4_RS23790 ad857553312dbba4b72a69b936943af7 255 SMART SM00345 15 74 3.7E-25 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS23790 ad857553312dbba4b72a69b936943af7 255 Pfam PF07729 FCD domain 99 229 6.0E-23 T 22-04-2016 IPR011711 GntR, C-terminal PP4_RS23790 ad857553312dbba4b72a69b936943af7 255 PANTHER PTHR11751 93 115 1.0E-41 T 22-04-2016 PP4_RS23790 ad857553312dbba4b72a69b936943af7 255 PANTHER PTHR11751 12 77 1.0E-41 T 22-04-2016 PP4_RS14140 3befdc33b1f0918e79232c976fdd6320 378 PANTHER PTHR10909 21 355 6.1E-57 T 22-04-2016 PP4_RS14140 3befdc33b1f0918e79232c976fdd6320 378 PANTHER PTHR10909:SF152 21 355 6.1E-57 T 22-04-2016 PP4_RS14140 3befdc33b1f0918e79232c976fdd6320 378 SUPERFAMILY SSF56645 12 219 2.23E-41 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 PP4_RS14140 3befdc33b1f0918e79232c976fdd6320 378 Gene3D G3DSA:1.10.540.10 8 86 5.2E-16 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS14140 3befdc33b1f0918e79232c976fdd6320 378 SUPERFAMILY SSF47203 239 373 1.01E-21 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS14140 3befdc33b1f0918e79232c976fdd6320 378 Gene3D G3DSA:2.40.110.10 129 212 2.2E-28 T 22-04-2016 PP4_RS14140 3befdc33b1f0918e79232c976fdd6320 378 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 15 81 7.9E-6 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS14140 3befdc33b1f0918e79232c976fdd6320 378 Gene3D G3DSA:1.20.140.10 213 374 6.8E-34 T 22-04-2016 PP4_RS14140 3befdc33b1f0918e79232c976fdd6320 378 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 121 211 2.5E-13 T 22-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 PP4_RS14140 3befdc33b1f0918e79232c976fdd6320 378 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 248 372 1.8E-9 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS22220 b7a85c11c196d7d2b037a7c46605db5c 763 Gene3D G3DSA:2.40.170.20 189 763 4.3E-157 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS22220 b7a85c11c196d7d2b037a7c46605db5c 763 SUPERFAMILY SSF56935 35 763 2.56E-129 T 22-04-2016 PP4_RS22220 b7a85c11c196d7d2b037a7c46605db5c 763 Gene3D G3DSA:2.170.130.10 51 177 8.0E-33 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS22220 b7a85c11c196d7d2b037a7c46605db5c 763 PANTHER PTHR32552 62 763 3.3E-236 T 22-04-2016 PP4_RS22220 b7a85c11c196d7d2b037a7c46605db5c 763 PANTHER PTHR32552 12 46 3.3E-236 T 22-04-2016 PP4_RS22220 b7a85c11c196d7d2b037a7c46605db5c 763 Pfam PF00593 TonB dependent receptor 515 760 3.6E-38 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS22220 b7a85c11c196d7d2b037a7c46605db5c 763 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 73 763 1.5E-86 T 22-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 PP4_RS22220 b7a85c11c196d7d2b037a7c46605db5c 763 PANTHER PTHR32552:SF8 62 763 3.3E-236 T 22-04-2016 IPR030148 Catecholate siderophore receptor Fiu GO:0004872|GO:0005506|GO:0009279|GO:0015891|GO:0016021 PP4_RS22220 b7a85c11c196d7d2b037a7c46605db5c 763 PANTHER PTHR32552:SF8 12 46 3.3E-236 T 22-04-2016 IPR030148 Catecholate siderophore receptor Fiu GO:0004872|GO:0005506|GO:0009279|GO:0015891|GO:0016021 PP4_RS22220 b7a85c11c196d7d2b037a7c46605db5c 763 Pfam PF07715 TonB-dependent Receptor Plug Domain 72 170 2.5E-20 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS09400 7991b776e0358febbb090fefbc904455 117 PANTHER PTHR26402 2 115 3.9E-27 T 22-04-2016 PP4_RS09400 7991b776e0358febbb090fefbc904455 117 SUPERFAMILY SSF52172 2 116 5.69E-29 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS09400 7991b776e0358febbb090fefbc904455 117 Gene3D G3DSA:3.40.50.2300 2 116 4.8E-29 T 22-04-2016 PP4_RS09400 7991b776e0358febbb090fefbc904455 117 SMART SM00448 2 111 4.4E-20 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS09400 7991b776e0358febbb090fefbc904455 117 Pfam PF00072 Response regulator receiver domain 4 111 9.8E-20 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS22850 0c54fe361735d2ef1fb17ebe6fc68d20 299 ProSitePatterns PS00552 MerR-type HTH domain signature. 10 33 - T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS22850 0c54fe361735d2ef1fb17ebe6fc68d20 299 PANTHER PTHR30204 1 227 2.7E-52 T 22-04-2016 PP4_RS22850 0c54fe361735d2ef1fb17ebe6fc68d20 299 Pfam PF13411 MerR HTH family regulatory protein 8 74 2.2E-17 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS22850 0c54fe361735d2ef1fb17ebe6fc68d20 299 SMART SM00422 7 76 8.6E-21 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS22850 0c54fe361735d2ef1fb17ebe6fc68d20 299 Gene3D G3DSA:1.10.1660.10 8 115 2.5E-21 T 22-04-2016 PP4_RS22850 0c54fe361735d2ef1fb17ebe6fc68d20 299 PANTHER PTHR30204:SF19 1 227 2.7E-52 T 22-04-2016 PP4_RS22850 0c54fe361735d2ef1fb17ebe6fc68d20 299 SUPERFAMILY SSF46955 8 102 5.04E-20 T 22-04-2016 IPR009061 Putative DNA-binding domain PP4_RS22195 71fabf8c705f9f9b4ccbf3be16e2b674 165 PANTHER PTHR30173 11 162 1.3E-38 T 22-04-2016 PP4_RS22195 71fabf8c705f9f9b4ccbf3be16e2b674 165 Pfam PF04542 Sigma-70 region 2 13 76 2.6E-11 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS22195 71fabf8c705f9f9b4ccbf3be16e2b674 165 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 11 161 4.6E-24 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS22195 71fabf8c705f9f9b4ccbf3be16e2b674 165 Pfam PF08281 Sigma-70, region 4 106 157 1.1E-12 T 22-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS22195 71fabf8c705f9f9b4ccbf3be16e2b674 165 Gene3D G3DSA:1.10.10.10 102 162 1.7E-15 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS22195 71fabf8c705f9f9b4ccbf3be16e2b674 165 PANTHER PTHR30173:SF30 11 162 1.3E-38 T 22-04-2016 PP4_RS22195 71fabf8c705f9f9b4ccbf3be16e2b674 165 Gene3D G3DSA:1.10.1740.10 12 77 2.3E-11 T 22-04-2016 PP4_RS22195 71fabf8c705f9f9b4ccbf3be16e2b674 165 SUPERFAMILY SSF88659 90 161 5.23E-15 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS22195 71fabf8c705f9f9b4ccbf3be16e2b674 165 SUPERFAMILY SSF88946 12 91 2.35E-12 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS11045 36aeee6a62585a5c8165ee744684b46e 161 PANTHER PTHR30466 2 153 1.1E-33 T 22-04-2016 PP4_RS11045 36aeee6a62585a5c8165ee744684b46e 161 Pfam PF01613 Flavin reductase like domain 11 154 3.2E-33 T 22-04-2016 IPR002563 Flavin reductase like domain GO:0010181 PP4_RS11045 36aeee6a62585a5c8165ee744684b46e 161 SMART SM00903 11 156 1.5E-50 T 22-04-2016 IPR002563 Flavin reductase like domain GO:0010181 PP4_RS11045 36aeee6a62585a5c8165ee744684b46e 161 SUPERFAMILY SSF50475 3 155 1.05E-43 T 22-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 PP4_RS11045 36aeee6a62585a5c8165ee744684b46e 161 Gene3D G3DSA:2.30.110.10 3 153 2.1E-47 T 22-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 PP4_RS16740 39f2d8547741efc3cf208c6ea3c7971e 354 SUPERFAMILY SSF53850 66 332 6.03E-22 T 22-04-2016 PP4_RS16740 39f2d8547741efc3cf208c6ea3c7971e 354 Gene3D G3DSA:3.40.190.10 90 226 9.4E-21 T 22-04-2016 PP4_RS16740 39f2d8547741efc3cf208c6ea3c7971e 354 Pfam PF09084 NMT1/THI5 like 72 128 1.5E-4 T 22-04-2016 IPR015168 SsuA/THI5-like PP4_RS26230 ec98b4634df3813894a97fb8a031ab46 323 TIGRFAM TIGR03284 thym_sym: thymidylate synthase 153 323 3.4E-37 T 22-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 PP4_RS26230 ec98b4634df3813894a97fb8a031ab46 323 PANTHER PTHR11548 1 113 2.5E-79 T 22-04-2016 PP4_RS26230 ec98b4634df3813894a97fb8a031ab46 323 PANTHER PTHR11548 155 323 2.5E-79 T 22-04-2016 PP4_RS26230 ec98b4634df3813894a97fb8a031ab46 323 Gene3D G3DSA:3.30.572.10 1 323 2.3E-97 T 22-04-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 PP4_RS26230 ec98b4634df3813894a97fb8a031ab46 323 PRINTS PR00108 Thymidylate synthase family signature 161 180 1.1E-29 T 22-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 PP4_RS26230 ec98b4634df3813894a97fb8a031ab46 323 PRINTS PR00108 Thymidylate synthase family signature 207 233 1.1E-29 T 22-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 PP4_RS26230 ec98b4634df3813894a97fb8a031ab46 323 PRINTS PR00108 Thymidylate synthase family signature 187 202 1.1E-29 T 22-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 PP4_RS26230 ec98b4634df3813894a97fb8a031ab46 323 PRINTS PR00108 Thymidylate synthase family signature 42 63 1.1E-29 T 22-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 PP4_RS26230 ec98b4634df3813894a97fb8a031ab46 323 PRINTS PR00108 Thymidylate synthase family signature 245 262 1.1E-29 T 22-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 PP4_RS26230 ec98b4634df3813894a97fb8a031ab46 323 Pfam PF00303 Thymidylate synthase 2 323 1.8E-86 T 22-04-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 PP4_RS26230 ec98b4634df3813894a97fb8a031ab46 323 SUPERFAMILY SSF55831 151 323 3.93E-98 T 22-04-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 PP4_RS26230 ec98b4634df3813894a97fb8a031ab46 323 SUPERFAMILY SSF55831 1 116 3.93E-98 T 22-04-2016 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 PP4_RS26230 ec98b4634df3813894a97fb8a031ab46 323 Hamap MF_00008 Thymidylate synthase [thyA]. 1 323 37.83 T 22-04-2016 IPR000398 Thymidylate synthase GO:0004799|GO:0006231 KEGG: 00240+2.1.1.45|KEGG: 00670+2.1.1.45|MetaCyc: PWY-3841|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7198|MetaCyc: PWY-7199|MetaCyc: PWY-7210|UniPathway: UPA00575 PP4_RS22890 b9ee8b3c6281e2a1b8f9c6c47c5da095 425 Gene3D G3DSA:3.40.50.720 182 357 3.0E-37 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS22890 b9ee8b3c6281e2a1b8f9c6c47c5da095 425 SUPERFAMILY SSF51735 160 313 2.04E-35 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS22890 b9ee8b3c6281e2a1b8f9c6c47c5da095 425 Pfam PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain 319 415 1.1E-21 T 22-04-2016 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 PP4_RS22890 b9ee8b3c6281e2a1b8f9c6c47c5da095 425 Hamap MF_00087 Glutamyl-tRNA reductase [hemA]. 2 416 30.99 T 22-04-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 PP4_RS22890 b9ee8b3c6281e2a1b8f9c6c47c5da095 425 SUPERFAMILY SSF69742 1 156 1.11E-47 T 22-04-2016 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 PP4_RS22890 b9ee8b3c6281e2a1b8f9c6c47c5da095 425 ProSitePatterns PS00747 Glutamyl-tRNA reductase signature. 97 120 - T 22-04-2016 IPR018214 Glutamyl-tRNA reductase, conserved site GO:0008883|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 PP4_RS22890 b9ee8b3c6281e2a1b8f9c6c47c5da095 425 PIRSF PIRSF000445 1 425 3.3E-154 T 22-04-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 PP4_RS22890 b9ee8b3c6281e2a1b8f9c6c47c5da095 425 SUPERFAMILY SSF69075 315 416 3.66E-26 T 22-04-2016 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 PP4_RS22890 b9ee8b3c6281e2a1b8f9c6c47c5da095 425 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 170 304 1.5E-48 T 22-04-2016 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase PP4_RS22890 b9ee8b3c6281e2a1b8f9c6c47c5da095 425 PANTHER PTHR21089:SF3 270 357 4.2E-137 T 22-04-2016 PP4_RS22890 b9ee8b3c6281e2a1b8f9c6c47c5da095 425 PANTHER PTHR21089:SF3 37 254 4.2E-137 T 22-04-2016 PP4_RS22890 b9ee8b3c6281e2a1b8f9c6c47c5da095 425 PANTHER PTHR21089 270 357 4.2E-137 T 22-04-2016 PP4_RS22890 b9ee8b3c6281e2a1b8f9c6c47c5da095 425 PANTHER PTHR21089 37 254 4.2E-137 T 22-04-2016 PP4_RS22890 b9ee8b3c6281e2a1b8f9c6c47c5da095 425 Pfam PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain 6 154 4.9E-50 T 22-04-2016 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 PP4_RS22890 b9ee8b3c6281e2a1b8f9c6c47c5da095 425 TIGRFAM TIGR01035 hemA: glutamyl-tRNA reductase 4 414 6.1E-138 T 22-04-2016 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase GO:0008883|GO:0033014|GO:0050661|GO:0055114 KEGG: 00860+1.2.1.70|MetaCyc: PWY-5188|UniPathway: UPA00251 PP4_RS15185 349947a7f96cd79ddedb5e047a573383 305 Gene3D G3DSA:1.10.10.10 6 89 1.7E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS15185 349947a7f96cd79ddedb5e047a573383 305 SUPERFAMILY SSF46785 5 115 2.72E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS15185 349947a7f96cd79ddedb5e047a573383 305 Pfam PF03466 LysR substrate binding domain 92 296 8.5E-42 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS15185 349947a7f96cd79ddedb5e047a573383 305 PANTHER PTHR30537:SF25 1 298 4.9E-104 T 22-04-2016 PP4_RS15185 349947a7f96cd79ddedb5e047a573383 305 SUPERFAMILY SSF53850 92 300 5.97E-46 T 22-04-2016 PP4_RS15185 349947a7f96cd79ddedb5e047a573383 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 65 8.6E-19 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS15185 349947a7f96cd79ddedb5e047a573383 305 Gene3D G3DSA:3.40.190.10 95 180 4.1E-24 T 22-04-2016 PP4_RS15185 349947a7f96cd79ddedb5e047a573383 305 Gene3D G3DSA:3.40.190.10 181 264 2.7E-23 T 22-04-2016 PP4_RS15185 349947a7f96cd79ddedb5e047a573383 305 PANTHER PTHR30537 1 298 4.9E-104 T 22-04-2016 PP4_RS02405 585814c26cd673f8a9cd7f04ca7e0d2d 249 Gene3D G3DSA:3.30.420.40 88 245 1.1E-41 T 22-04-2016 PP4_RS02405 585814c26cd673f8a9cd7f04ca7e0d2d 249 SUPERFAMILY SSF53067 117 246 2.63E-30 T 22-04-2016 PP4_RS02405 585814c26cd673f8a9cd7f04ca7e0d2d 249 Hamap MF_01274 Type III pantothenate kinase [coaX]. 1 249 18.756 T 22-04-2016 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 PP4_RS02405 585814c26cd673f8a9cd7f04ca7e0d2d 249 Pfam PF03309 Type III pantothenate kinase 2 200 1.7E-43 T 22-04-2016 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 PP4_RS02405 585814c26cd673f8a9cd7f04ca7e0d2d 249 SUPERFAMILY SSF53067 1 114 1.36E-26 T 22-04-2016 PP4_RS02405 585814c26cd673f8a9cd7f04ca7e0d2d 249 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 5 244 3.4E-27 T 22-04-2016 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961|UniPathway: UPA00241 PP4_RS02405 585814c26cd673f8a9cd7f04ca7e0d2d 249 PANTHER PTHR34265 1 249 4.1E-46 T 22-04-2016 PP4_RS18620 d9e75ead6811b8031c9a83e11f2a72b5 487 SMART SM00846 137 298 4.6E-54 T 22-04-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 PP4_RS18620 d9e75ead6811b8031c9a83e11f2a72b5 487 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 303 460 2.0E-47 T 22-04-2016 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: REACT_474 PP4_RS18620 d9e75ead6811b8031c9a83e11f2a72b5 487 PANTHER PTHR10836:SF35 125 485 2.8E-237 T 22-04-2016 PP4_RS18620 d9e75ead6811b8031c9a83e11f2a72b5 487 SUPERFAMILY SSF51735 138 314 2.82E-44 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS18620 d9e75ead6811b8031c9a83e11f2a72b5 487 Gene3D G3DSA:3.30.360.10 307 462 1.0E-57 T 22-04-2016 PP4_RS18620 d9e75ead6811b8031c9a83e11f2a72b5 487 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 417 432 2.3E-19 T 22-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 PP4_RS18620 d9e75ead6811b8031c9a83e11f2a72b5 487 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 319 335 2.3E-19 T 22-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 PP4_RS18620 d9e75ead6811b8031c9a83e11f2a72b5 487 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 292 310 2.3E-19 T 22-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 PP4_RS18620 d9e75ead6811b8031c9a83e11f2a72b5 487 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 375 392 2.3E-19 T 22-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 PP4_RS18620 d9e75ead6811b8031c9a83e11f2a72b5 487 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 256 269 2.3E-19 T 22-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 PP4_RS18620 d9e75ead6811b8031c9a83e11f2a72b5 487 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 296 303 - T 22-04-2016 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: REACT_474 PP4_RS18620 d9e75ead6811b8031c9a83e11f2a72b5 487 SUPERFAMILY SSF55347 298 461 1.07E-54 T 22-04-2016 PP4_RS18620 d9e75ead6811b8031c9a83e11f2a72b5 487 PANTHER PTHR10836 125 485 2.8E-237 T 22-04-2016 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: REACT_474 PP4_RS18620 d9e75ead6811b8031c9a83e11f2a72b5 487 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 139 472 9.4E-111 T 22-04-2016 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS18620 d9e75ead6811b8031c9a83e11f2a72b5 487 Gene3D G3DSA:3.40.50.720 138 306 3.2E-49 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS18620 d9e75ead6811b8031c9a83e11f2a72b5 487 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 138 298 2.1E-36 T 22-04-2016 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: REACT_474 PP4_RS02210 58df6f3a655c9858c82615838338fd52 439 Pfam PF09312 SurA N-terminal domain 30 147 1.9E-46 T 22-04-2016 IPR015391 SurA N-terminal PP4_RS02210 58df6f3a655c9858c82615838338fd52 439 SUPERFAMILY SSF54534 287 388 7.2E-33 T 22-04-2016 PP4_RS02210 58df6f3a655c9858c82615838338fd52 439 Pfam PF13616 PPIC-type PPIASE domain 286 386 1.0E-27 T 22-04-2016 PP4_RS02210 58df6f3a655c9858c82615838338fd52 439 Hamap MF_01183 Chaperone SurA [surA]. 13 432 33.443 T 22-04-2016 IPR023034 Peptidyl-prolyl isomerase SurA GO:0003755|GO:0006457|GO:0030288|GO:0042277|GO:0042710|GO:0043165|GO:0050821|GO:0051082|GO:0051085|GO:0060274 PP4_RS02210 58df6f3a655c9858c82615838338fd52 439 PANTHER PTHR10657 12 430 4.7E-223 T 22-04-2016 PP4_RS02210 58df6f3a655c9858c82615838338fd52 439 SUPERFAMILY SSF109998 30 205 3.92E-46 T 22-04-2016 IPR027304 Trigger factor/SurA domain PP4_RS02210 58df6f3a655c9858c82615838338fd52 439 Gene3D G3DSA:1.10.3120.10 43 121 6.2E-4 T 22-04-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 PP4_RS02210 58df6f3a655c9858c82615838338fd52 439 Pfam PF00639 PPIC-type PPIASE domain 184 276 9.5E-20 T 22-04-2016 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 PP4_RS02210 58df6f3a655c9858c82615838338fd52 439 PANTHER PTHR10657:SF16 12 430 4.7E-223 T 22-04-2016 PP4_RS02210 58df6f3a655c9858c82615838338fd52 439 Gene3D G3DSA:3.10.50.40 172 282 4.0E-30 T 22-04-2016 PP4_RS02210 58df6f3a655c9858c82615838338fd52 439 Gene3D G3DSA:3.10.50.40 287 406 6.9E-38 T 22-04-2016 PP4_RS02210 58df6f3a655c9858c82615838338fd52 439 SUPERFAMILY SSF54534 177 281 5.3E-27 T 22-04-2016 PP4_RS04765 6f8941403364eca9124ad06d82755707 483 SUPERFAMILY SSF103473 248 420 5.41E-68 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS04765 6f8941403364eca9124ad06d82755707 483 SUPERFAMILY SSF103473 453 479 5.41E-68 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS04765 6f8941403364eca9124ad06d82755707 483 SUPERFAMILY SSF103473 7 198 5.41E-68 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS04765 6f8941403364eca9124ad06d82755707 483 PANTHER PTHR23501:SF73 5 483 1.3E-149 T 22-04-2016 PP4_RS04765 6f8941403364eca9124ad06d82755707 483 Pfam PF07690 Major Facilitator Superfamily 17 409 3.6E-53 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS04765 6f8941403364eca9124ad06d82755707 483 Gene3D G3DSA:1.20.1250.20 265 478 7.4E-13 T 22-04-2016 PP4_RS04765 6f8941403364eca9124ad06d82755707 483 Gene3D G3DSA:1.20.1250.20 14 185 6.9E-35 T 22-04-2016 PP4_RS04765 6f8941403364eca9124ad06d82755707 483 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 14 417 2.2E-71 T 22-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 PP4_RS04765 6f8941403364eca9124ad06d82755707 483 PRINTS PR01036 Tetracycline resistance protein TetB signature 338 358 4.0E-8 T 22-04-2016 PP4_RS04765 6f8941403364eca9124ad06d82755707 483 PRINTS PR01036 Tetracycline resistance protein TetB signature 106 126 4.0E-8 T 22-04-2016 PP4_RS04765 6f8941403364eca9124ad06d82755707 483 PRINTS PR01036 Tetracycline resistance protein TetB signature 202 220 4.0E-8 T 22-04-2016 PP4_RS04765 6f8941403364eca9124ad06d82755707 483 PRINTS PR01036 Tetracycline resistance protein TetB signature 136 160 4.0E-8 T 22-04-2016 PP4_RS04765 6f8941403364eca9124ad06d82755707 483 PRINTS PR01036 Tetracycline resistance protein TetB signature 16 40 4.0E-8 T 22-04-2016 PP4_RS04765 6f8941403364eca9124ad06d82755707 483 PANTHER PTHR23501 5 483 1.3E-149 T 22-04-2016 PP4_RS08085 81b3a6bb89ae1779cfcac82855bf7e49 296 Gene3D G3DSA:3.40.50.2300 120 238 8.4E-11 T 22-04-2016 PP4_RS08085 81b3a6bb89ae1779cfcac82855bf7e49 296 PANTHER PTHR35271 67 291 2.9E-30 T 22-04-2016 PP4_RS16265 065e4dea26916a76e52e483856dba789 96 SUPERFAMILY SSF54292 17 92 2.23E-14 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS16265 065e4dea26916a76e52e483856dba789 96 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 13 91 1.5E-19 T 22-04-2016 PP4_RS16265 065e4dea26916a76e52e483856dba789 96 Gene3D G3DSA:3.10.20.30 28 83 8.5E-5 T 22-04-2016 IPR012675 Beta-grasp domain PP4_RS17380 8427fb2113d23b40cda59bec1b4414d1 177 PANTHER PTHR37089 1 177 9.1E-22 T 22-04-2016 PP4_RS17380 8427fb2113d23b40cda59bec1b4414d1 177 SMART SM00972 118 174 7.0E-16 T 22-04-2016 IPR007893 Spore coat protein U PP4_RS17380 8427fb2113d23b40cda59bec1b4414d1 177 Pfam PF05229 Spore Coat Protein U domain 27 173 7.1E-23 T 22-04-2016 IPR007893 Spore coat protein U PP4_RS23610 a09744316ed4c428d5ecb79a4b2abbd8 644 Pfam PF16177 Acetyl-coenzyme A synthetase N-terminus 24 79 7.0E-22 T 22-04-2016 IPR032387 Acetyl-coenzyme A synthetase, N-terminal domain KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118 PP4_RS23610 a09744316ed4c428d5ecb79a4b2abbd8 644 ProSitePatterns PS00455 Putative AMP-binding domain signature. 257 268 - T 22-04-2016 IPR020845 AMP-binding, conserved site PP4_RS23610 a09744316ed4c428d5ecb79a4b2abbd8 644 Pfam PF13193 AMP-binding enzyme C-terminal domain 527 605 6.1E-22 T 22-04-2016 IPR025110 AMP-binding enzyme C-terminal domain PP4_RS23610 a09744316ed4c428d5ecb79a4b2abbd8 644 Pfam PF00501 AMP-binding enzyme 82 518 1.6E-87 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PP4_RS23610 a09744316ed4c428d5ecb79a4b2abbd8 644 Gene3D G3DSA:3.40.50.980 77 262 9.8E-44 T 22-04-2016 PP4_RS23610 a09744316ed4c428d5ecb79a4b2abbd8 644 Hamap MF_01123 Acetyl-coenzyme A synthetase [acs]. 2 641 52.421 T 22-04-2016 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118|Reactome: REACT_13433 PP4_RS23610 a09744316ed4c428d5ecb79a4b2abbd8 644 Gene3D G3DSA:3.30.300.30 514 634 4.5E-26 T 22-04-2016 PP4_RS23610 a09744316ed4c428d5ecb79a4b2abbd8 644 Gene3D G3DSA:2.30.38.10 436 512 9.8E-6 T 22-04-2016 PP4_RS23610 a09744316ed4c428d5ecb79a4b2abbd8 644 TIGRFAM TIGR02188 Ac_CoA_lig_AcsA: acetate--CoA ligase 21 639 0.0 T 22-04-2016 IPR011904 Acetate-CoA ligase GO:0003987|GO:0016208|GO:0019427 KEGG: 00010+6.2.1.1|KEGG: 00620+6.2.1.1|KEGG: 00640+6.2.1.1|KEGG: 00680+6.2.1.1|KEGG: 00720+6.2.1.1|MetaCyc: PWY-6672|MetaCyc: PWY-7118|Reactome: REACT_13433 PP4_RS23610 a09744316ed4c428d5ecb79a4b2abbd8 644 SUPERFAMILY SSF56801 11 635 6.15E-182 T 22-04-2016 PP4_RS23610 a09744316ed4c428d5ecb79a4b2abbd8 644 Gene3D G3DSA:3.40.50.980 263 420 6.0E-26 T 22-04-2016 PP4_RS23610 a09744316ed4c428d5ecb79a4b2abbd8 644 PANTHER PTHR24095 14 641 0.0 T 22-04-2016 PP4_RS23610 a09744316ed4c428d5ecb79a4b2abbd8 644 PANTHER PTHR24095:SF178 14 641 0.0 T 22-04-2016 PP4_RS18975 bbabb60a1bda7de76e009d13e1176321 166 Gene3D G3DSA:1.10.10.10 106 160 9.5E-11 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS18975 bbabb60a1bda7de76e009d13e1176321 166 Pfam PF04542 Sigma-70 region 2 12 77 9.5E-12 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS18975 bbabb60a1bda7de76e009d13e1176321 166 PANTHER PTHR30173 5 160 1.7E-32 T 22-04-2016 PP4_RS18975 bbabb60a1bda7de76e009d13e1176321 166 SUPERFAMILY SSF88946 5 95 5.49E-14 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS18975 bbabb60a1bda7de76e009d13e1176321 166 SUPERFAMILY SSF88659 104 161 1.74E-11 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS18975 bbabb60a1bda7de76e009d13e1176321 166 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 8 161 5.7E-19 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS18975 bbabb60a1bda7de76e009d13e1176321 166 PANTHER PTHR30173:SF9 5 160 1.7E-32 T 22-04-2016 PP4_RS18975 bbabb60a1bda7de76e009d13e1176321 166 Gene3D G3DSA:1.10.1740.10 5 77 6.3E-12 T 22-04-2016 PP4_RS18975 bbabb60a1bda7de76e009d13e1176321 166 Pfam PF08281 Sigma-70, region 4 108 160 1.1E-12 T 22-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS21725 075a182d9666fa696c780d41b4272bf7 475 Pfam PF13520 Amino acid permease 10 415 1.0E-74 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS21725 075a182d9666fa696c780d41b4272bf7 475 PIRSF PIRSF006060 1 473 1.0E-48 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS21725 075a182d9666fa696c780d41b4272bf7 475 TIGRFAM TIGR03810 arg_ornith_anti: arginine-ornithine antiporter 7 474 8.8E-220 T 22-04-2016 IPR022461 Arginine/ornithine antiporter GO:0005887|GO:0006527|GO:0043858 PP4_RS21725 075a182d9666fa696c780d41b4272bf7 475 PANTHER PTHR11785:SF77 3 469 5.5E-239 T 22-04-2016 PP4_RS21725 075a182d9666fa696c780d41b4272bf7 475 TIGRFAM TIGR00905 2A0302: transporter, basic amino acid/polyamine antiporter (APA) family 2 475 1.1E-198 T 22-04-2016 IPR004754 Amino acid antiporter GO:0006865|GO:0016021 PP4_RS21725 075a182d9666fa696c780d41b4272bf7 475 PANTHER PTHR11785 3 469 5.5E-239 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS00230 c4686b33b3a46e158ba3c531da919628 295 Gene3D G3DSA:3.40.190.10 91 185 1.7E-15 T 22-04-2016 PP4_RS00230 c4686b33b3a46e158ba3c531da919628 295 PANTHER PTHR30126 1 293 2.2E-105 T 22-04-2016 PP4_RS00230 c4686b33b3a46e158ba3c531da919628 295 Pfam PF03466 LysR substrate binding domain 91 285 5.1E-35 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS00230 c4686b33b3a46e158ba3c531da919628 295 SUPERFAMILY SSF53850 91 287 1.36E-35 T 22-04-2016 PP4_RS00230 c4686b33b3a46e158ba3c531da919628 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.7E-13 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS00230 c4686b33b3a46e158ba3c531da919628 295 Gene3D G3DSA:3.40.190.10 186 252 2.3E-7 T 22-04-2016 PP4_RS00230 c4686b33b3a46e158ba3c531da919628 295 PANTHER PTHR30126:SF12 1 293 2.2E-105 T 22-04-2016 PP4_RS00230 c4686b33b3a46e158ba3c531da919628 295 SUPERFAMILY SSF46785 1 110 1.82E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS00230 c4686b33b3a46e158ba3c531da919628 295 Gene3D G3DSA:1.10.10.10 1 85 4.6E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS03265 6a961044fc3aa6805fe40eea4668c547 123 TIGRFAM TIGR01158 SUI1_rel: putative translation initiation factor SUI1 14 123 2.4E-34 T 22-04-2016 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 PP4_RS03265 6a961044fc3aa6805fe40eea4668c547 123 Pfam PF01253 Translation initiation factor SUI1 49 117 1.4E-15 T 22-04-2016 IPR001950 Translation initiation factor SUI1 GO:0003743|GO:0006413 PP4_RS03265 6a961044fc3aa6805fe40eea4668c547 123 PANTHER PTHR12789 41 123 5.6E-25 T 22-04-2016 PP4_RS03265 6a961044fc3aa6805fe40eea4668c547 123 PIRSF PIRSF037511 1 123 1.1E-50 T 22-04-2016 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 PP4_RS03265 6a961044fc3aa6805fe40eea4668c547 123 Gene3D G3DSA:3.30.780.10 44 123 2.9E-31 T 22-04-2016 IPR001950 Translation initiation factor SUI1 GO:0003743|GO:0006413 PP4_RS03265 6a961044fc3aa6805fe40eea4668c547 123 SUPERFAMILY SSF55159 13 120 8.63E-28 T 22-04-2016 IPR001950 Translation initiation factor SUI1 GO:0003743|GO:0006413 PP4_RS00850 49b769e31f4e31a4aa4ed5bf36ca74f3 4924 SUPERFAMILY SSF141072 688 778 1.03E-5 T 22-04-2016 PP4_RS00850 49b769e31f4e31a4aa4ed5bf36ca74f3 4924 SUPERFAMILY SSF141072 588 678 1.57E-5 T 22-04-2016 PP4_RS00850 49b769e31f4e31a4aa4ed5bf36ca74f3 4924 SUPERFAMILY SSF53300 4387 4532 1.54E-15 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS00850 49b769e31f4e31a4aa4ed5bf36ca74f3 4924 TIGRFAM TIGR03661 T1SS_VCA0849: type I secretion C-terminal target domain (VC_A0849 subclass) 4831 4911 2.0E-19 T 22-04-2016 IPR019960 Type I secretion C-terminal target domain, VC_A0849 subclass PP4_RS00850 49b769e31f4e31a4aa4ed5bf36ca74f3 4924 Pfam PF00092 von Willebrand factor type A domain 4403 4528 5.2E-10 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS00850 49b769e31f4e31a4aa4ed5bf36ca74f3 4924 SMART SM00327 4401 4598 2.8E-7 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS00850 49b769e31f4e31a4aa4ed5bf36ca74f3 4924 SUPERFAMILY SSF141072 3833 3936 4.05E-14 T 22-04-2016 PP4_RS00850 49b769e31f4e31a4aa4ed5bf36ca74f3 4924 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 4792 4810 - T 22-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site PP4_RS00850 49b769e31f4e31a4aa4ed5bf36ca74f3 4924 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 4801 4819 - T 22-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site PP4_RS00850 49b769e31f4e31a4aa4ed5bf36ca74f3 4924 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 4774 4792 - T 22-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site PP4_RS00850 49b769e31f4e31a4aa4ed5bf36ca74f3 4924 ProSitePatterns PS00330 Hemolysin-type calcium-binding region signature. 4783 4801 - T 22-04-2016 IPR018511 Hemolysin-type calcium-binding conserved site PP4_RS00850 49b769e31f4e31a4aa4ed5bf36ca74f3 4924 Gene3D G3DSA:3.40.50.410 4400 4529 7.2E-12 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS00850 49b769e31f4e31a4aa4ed5bf36ca74f3 4924 PRINTS PR00313 NodO calcium binding signature 4814 4823 4.8E-9 T 22-04-2016 PP4_RS00850 49b769e31f4e31a4aa4ed5bf36ca74f3 4924 PRINTS PR00313 NodO calcium binding signature 4696 4707 4.8E-9 T 22-04-2016 PP4_RS00850 49b769e31f4e31a4aa4ed5bf36ca74f3 4924 PRINTS PR00313 NodO calcium binding signature 4769 4777 4.8E-9 T 22-04-2016 PP4_RS00850 49b769e31f4e31a4aa4ed5bf36ca74f3 4924 PRINTS PR00313 NodO calcium binding signature 4796 4804 4.8E-9 T 22-04-2016 PP4_RS00850 49b769e31f4e31a4aa4ed5bf36ca74f3 4924 Gene3D G3DSA:2.150.10.10 4371 4390 4.7E-14 T 22-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal PP4_RS00850 49b769e31f4e31a4aa4ed5bf36ca74f3 4924 Gene3D G3DSA:2.150.10.10 4760 4880 4.7E-14 T 22-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal PP4_RS00850 49b769e31f4e31a4aa4ed5bf36ca74f3 4924 Gene3D G3DSA:2.150.10.10 4690 4707 4.7E-14 T 22-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal PP4_RS00850 49b769e31f4e31a4aa4ed5bf36ca74f3 4924 SUPERFAMILY SSF51120 4693 4875 4.19E-33 T 22-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal PP4_RS00850 49b769e31f4e31a4aa4ed5bf36ca74f3 4924 SUPERFAMILY SSF141072 488 578 1.03E-5 T 22-04-2016 PP4_RS00850 49b769e31f4e31a4aa4ed5bf36ca74f3 4924 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4370 4387 0.0048 T 22-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 PP4_RS00850 49b769e31f4e31a4aa4ed5bf36ca74f3 4924 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4769 4785 0.049 T 22-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 PP4_RS00850 49b769e31f4e31a4aa4ed5bf36ca74f3 4924 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4787 4803 0.046 T 22-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 PP4_RS00850 49b769e31f4e31a4aa4ed5bf36ca74f3 4924 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4693 4706 0.3 T 22-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 PP4_RS00850 49b769e31f4e31a4aa4ed5bf36ca74f3 4924 Pfam PF00353 Haemolysin-type calcium-binding repeat (2 copies) 4804 4821 0.16 T 22-04-2016 IPR001343 Haemolysin-type calcium-binding repeat GO:0005509 PP4_RS00850 49b769e31f4e31a4aa4ed5bf36ca74f3 4924 SUPERFAMILY SSF141072 388 478 1.83E-5 T 22-04-2016 PP4_RS00520 ae2415a2ee9942a0ce0b7facfd0ac925 223 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 45 211 1.2E-16 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS00520 ae2415a2ee9942a0ce0b7facfd0ac925 223 SUPERFAMILY SSF161098 13 210 1.44E-40 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS00520 ae2415a2ee9942a0ce0b7facfd0ac925 223 PRINTS PR00173 Glutamate-aspartate symporter signature 159 178 4.6E-5 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS00520 ae2415a2ee9942a0ce0b7facfd0ac925 223 PRINTS PR00173 Glutamate-aspartate symporter signature 61 80 4.6E-5 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS00520 ae2415a2ee9942a0ce0b7facfd0ac925 223 PRINTS PR00173 Glutamate-aspartate symporter signature 34 53 4.6E-5 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS00520 ae2415a2ee9942a0ce0b7facfd0ac925 223 PANTHER PTHR30450:SF1 1 223 1.4E-123 T 22-04-2016 PP4_RS00520 ae2415a2ee9942a0ce0b7facfd0ac925 223 PANTHER PTHR30450 1 223 1.4E-123 T 22-04-2016 PP4_RS00520 ae2415a2ee9942a0ce0b7facfd0ac925 223 Gene3D G3DSA:1.10.3720.10 12 218 8.4E-37 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS20610 2ec5b2b4f2a049f56654ba103e4d5368 134 SMART SM00347 24 123 5.2E-11 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS20610 2ec5b2b4f2a049f56654ba103e4d5368 134 Gene3D G3DSA:1.10.10.10 4 133 8.0E-32 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS20610 2ec5b2b4f2a049f56654ba103e4d5368 134 PANTHER PTHR33164 3 134 4.3E-28 T 22-04-2016 PP4_RS20610 2ec5b2b4f2a049f56654ba103e4d5368 134 PANTHER PTHR33164:SF1 3 134 4.3E-28 T 22-04-2016 PP4_RS20610 2ec5b2b4f2a049f56654ba103e4d5368 134 PRINTS PR00598 Bacterial regulatory protein MarR family signature 113 133 1.4E-5 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS20610 2ec5b2b4f2a049f56654ba103e4d5368 134 PRINTS PR00598 Bacterial regulatory protein MarR family signature 83 99 1.4E-5 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS20610 2ec5b2b4f2a049f56654ba103e4d5368 134 PRINTS PR00598 Bacterial regulatory protein MarR family signature 48 64 1.4E-5 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS20610 2ec5b2b4f2a049f56654ba103e4d5368 134 SUPERFAMILY SSF46785 4 133 1.0E-30 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS20610 2ec5b2b4f2a049f56654ba103e4d5368 134 Pfam PF12802 MarR family 30 84 2.2E-9 T 22-04-2016 PP4_RS24420 3a4f6a448eb74b44abaee8bc1cc74918 210 Pfam PF00849 RNA pseudouridylate synthase 33 177 3.8E-15 T 22-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS24420 3a4f6a448eb74b44abaee8bc1cc74918 210 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 37 206 2.0E-57 T 22-04-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 PP4_RS24420 3a4f6a448eb74b44abaee8bc1cc74918 210 PANTHER PTHR21600:SF23 151 206 6.6E-87 T 22-04-2016 PP4_RS24420 3a4f6a448eb74b44abaee8bc1cc74918 210 PANTHER PTHR21600:SF23 22 134 6.6E-87 T 22-04-2016 PP4_RS24420 3a4f6a448eb74b44abaee8bc1cc74918 210 SUPERFAMILY SSF55120 30 209 1.6E-43 T 22-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS24420 3a4f6a448eb74b44abaee8bc1cc74918 210 PANTHER PTHR21600 151 206 6.6E-87 T 22-04-2016 PP4_RS24420 3a4f6a448eb74b44abaee8bc1cc74918 210 PANTHER PTHR21600 22 134 6.6E-87 T 22-04-2016 PP4_RS24420 3a4f6a448eb74b44abaee8bc1cc74918 210 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 68 82 - T 22-04-2016 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 PP4_RS26700 0d8b553f9bb1e4cca5244d6f5c943332 110 SMART SM01219 3 108 2.4E-41 T 22-04-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 PP4_RS26700 0d8b553f9bb1e4cca5244d6f5c943332 110 Hamap MF_00142 Protein CyaY [cyaY]. 3 107 23.856 T 22-04-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 PP4_RS26700 0d8b553f9bb1e4cca5244d6f5c943332 110 Pfam PF01491 Frataxin-like domain 3 104 2.9E-23 T 22-04-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 PP4_RS26700 0d8b553f9bb1e4cca5244d6f5c943332 110 PANTHER PTHR16821 2 110 5.7E-27 T 22-04-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 PP4_RS26700 0d8b553f9bb1e4cca5244d6f5c943332 110 SUPERFAMILY SSF55387 3 107 2.62E-30 T 22-04-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 PP4_RS26700 0d8b553f9bb1e4cca5244d6f5c943332 110 ProSitePatterns PS01344 Frataxin family signature. 50 64 - T 22-04-2016 IPR020895 Frataxin conserved site PP4_RS26700 0d8b553f9bb1e4cca5244d6f5c943332 110 TIGRFAM TIGR03421 FeS_CyaY: iron donor protein CyaY 5 107 2.7E-33 T 22-04-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 PP4_RS26700 0d8b553f9bb1e4cca5244d6f5c943332 110 Gene3D G3DSA:3.30.920.10 2 107 1.0E-28 T 22-04-2016 IPR002908 Frataxin/CyaY GO:0008199|GO:0016226 PP4_RS26095 814557cd6aaf6b970d0e9056b1826ec0 496 SUPERFAMILY SSF63411 292 479 1.27E-44 T 22-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 PP4_RS26095 814557cd6aaf6b970d0e9056b1826ec0 496 PANTHER PTHR11851 72 472 1.9E-54 T 22-04-2016 PP4_RS26095 814557cd6aaf6b970d0e9056b1826ec0 496 Gene3D G3DSA:3.30.830.10 298 472 5.1E-27 T 22-04-2016 IPR011237 Peptidase M16 domain GO:0046872 PP4_RS26095 814557cd6aaf6b970d0e9056b1826ec0 496 SUPERFAMILY SSF63411 63 269 2.5E-42 T 22-04-2016 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like GO:0003824|GO:0046872 PP4_RS26095 814557cd6aaf6b970d0e9056b1826ec0 496 Pfam PF05193 Peptidase M16 inactive domain 231 406 2.6E-26 T 22-04-2016 IPR007863 Peptidase M16, C-terminal PP4_RS26095 814557cd6aaf6b970d0e9056b1826ec0 496 PANTHER PTHR11851:SF140 72 472 1.9E-54 T 22-04-2016 PP4_RS26095 814557cd6aaf6b970d0e9056b1826ec0 496 Gene3D G3DSA:3.30.830.10 65 278 2.5E-38 T 22-04-2016 IPR011237 Peptidase M16 domain GO:0046872 PP4_RS09005 121d93d0cb35838a361b9a6449a2dda8 292 PANTHER PTHR30579:SF0 7 292 2.4E-98 T 22-04-2016 PP4_RS09005 121d93d0cb35838a361b9a6449a2dda8 292 Gene3D G3DSA:3.40.190.10 195 245 2.8E-10 T 22-04-2016 PP4_RS09005 121d93d0cb35838a361b9a6449a2dda8 292 PANTHER PTHR30579 7 292 2.4E-98 T 22-04-2016 PP4_RS09005 121d93d0cb35838a361b9a6449a2dda8 292 Pfam PF03466 LysR substrate binding domain 96 245 6.4E-25 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS09005 121d93d0cb35838a361b9a6449a2dda8 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 14 73 6.5E-20 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS09005 121d93d0cb35838a361b9a6449a2dda8 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 40 2.1E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS09005 121d93d0cb35838a361b9a6449a2dda8 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 50 2.1E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS09005 121d93d0cb35838a361b9a6449a2dda8 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 50 61 2.1E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS09005 121d93d0cb35838a361b9a6449a2dda8 292 SUPERFAMILY SSF46785 7 117 6.72E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS09005 121d93d0cb35838a361b9a6449a2dda8 292 Gene3D G3DSA:3.40.190.10 93 194 1.3E-12 T 22-04-2016 PP4_RS09005 121d93d0cb35838a361b9a6449a2dda8 292 SUPERFAMILY SSF53850 97 288 8.38E-25 T 22-04-2016 PP4_RS09005 121d93d0cb35838a361b9a6449a2dda8 292 Gene3D G3DSA:1.10.10.10 13 92 4.7E-26 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 562 624 1.2E-23 T 22-04-2016 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 Gene3D G3DSA:3.30.565.10 19 219 4.2E-74 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 Gene3D G3DSA:3.30.230.10 220 394 2.6E-45 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 TIGRFAM TIGR01055 parE_Gneg: DNA topoisomerase IV, B subunit 8 628 0.0 T 22-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 SMART SM00433 38 628 1.7E-204 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 Pfam PF01751 Toprim domain 417 526 1.7E-12 T 22-04-2016 IPR006171 Toprim domain PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 PRINTS PR00418 DNA topoisomerase II family signature 113 127 2.7E-58 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 PRINTS PR00418 DNA topoisomerase II family signature 270 283 2.7E-58 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 PRINTS PR00418 DNA topoisomerase II family signature 35 50 2.7E-58 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 PRINTS PR00418 DNA topoisomerase II family signature 483 499 2.7E-58 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 PRINTS PR00418 DNA topoisomerase II family signature 70 83 2.7E-58 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 PRINTS PR00418 DNA topoisomerase II family signature 566 582 2.7E-58 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 PRINTS PR00418 DNA topoisomerase II family signature 418 432 2.7E-58 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 PRINTS PR00418 DNA topoisomerase II family signature 501 518 2.7E-58 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 PRINTS PR00418 DNA topoisomerase II family signature 521 533 2.7E-58 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 ProSitePatterns PS00177 DNA topoisomerase II signature. 420 428 - T 22-04-2016 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 SUPERFAMILY SSF54211 221 386 2.85E-44 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 Hamap MF_00938 DNA topoisomerase 4 subunit B [parE]. 6 632 46.8 T 22-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 Gene3D G3DSA:3.40.50.670 402 614 3.1E-75 T 22-04-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 SUPERFAMILY SSF56719 392 625 2.22E-75 T 22-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 PRINTS PR01098 Topoisomerase IV subunit B signature 452 473 4.3E-114 T 22-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 PRINTS PR01098 Topoisomerase IV subunit B signature 196 217 4.3E-114 T 22-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 PRINTS PR01098 Topoisomerase IV subunit B signature 153 168 4.3E-114 T 22-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 PRINTS PR01098 Topoisomerase IV subunit B signature 242 265 4.3E-114 T 22-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 PRINTS PR01098 Topoisomerase IV subunit B signature 30 43 4.3E-114 T 22-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 PRINTS PR01098 Topoisomerase IV subunit B signature 473 485 4.3E-114 T 22-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 PRINTS PR01098 Topoisomerase IV subunit B signature 366 391 4.3E-114 T 22-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 PRINTS PR01098 Topoisomerase IV subunit B signature 178 195 4.3E-114 T 22-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 PRINTS PR01098 Topoisomerase IV subunit B signature 588 602 4.3E-114 T 22-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 PRINTS PR01098 Topoisomerase IV subunit B signature 507 523 4.3E-114 T 22-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 PRINTS PR01098 Topoisomerase IV subunit B signature 139 153 4.3E-114 T 22-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 PRINTS PR01098 Topoisomerase IV subunit B signature 541 563 4.3E-114 T 22-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 PRINTS PR01098 Topoisomerase IV subunit B signature 315 330 4.3E-114 T 22-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 PRINTS PR01098 Topoisomerase IV subunit B signature 342 365 4.3E-114 T 22-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 PRINTS PR01098 Topoisomerase IV subunit B signature 298 314 4.3E-114 T 22-04-2016 IPR005737 DNA topoisomerase IV, subunit B, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 PANTHER PTHR10169:SF45 7 633 0.0 T 22-04-2016 PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 32 175 6.7E-18 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 SUPERFAMILY SSF55874 9 219 2.36E-65 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 PANTHER PTHR10169 7 633 0.0 T 22-04-2016 PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 Pfam PF00204 DNA gyrase B 223 389 1.0E-38 T 22-04-2016 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS25110 7e462e662970c59b6f36eca62158d0c8 634 SMART SM00387 31 177 1.3E-20 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS09755 30d29cbbccd5caa9e706d682dd566045 793 Gene3D G3DSA:3.30.930.10 498 687 3.2E-63 T 22-04-2016 PP4_RS09755 30d29cbbccd5caa9e706d682dd566045 793 Pfam PF03147 Ferredoxin-fold anticodon binding domain 699 792 1.7E-26 T 22-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 PP4_RS09755 30d29cbbccd5caa9e706d682dd566045 793 SMART SM00896 699 792 1.5E-39 T 22-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 PP4_RS09755 30d29cbbccd5caa9e706d682dd566045 793 Gene3D G3DSA:3.50.40.10 199 392 2.4E-81 T 22-04-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 PP4_RS09755 30d29cbbccd5caa9e706d682dd566045 793 Pfam PF01588 Putative tRNA binding domain 45 144 1.3E-23 T 22-04-2016 IPR002547 tRNA-binding domain GO:0000049 Reactome: REACT_71 PP4_RS09755 30d29cbbccd5caa9e706d682dd566045 793 Gene3D G3DSA:3.30.56.10 154 183 8.4E-25 T 22-04-2016 PP4_RS09755 30d29cbbccd5caa9e706d682dd566045 793 Gene3D G3DSA:3.30.56.10 1 38 8.4E-25 T 22-04-2016 PP4_RS09755 30d29cbbccd5caa9e706d682dd566045 793 Gene3D G3DSA:3.30.70.380 701 792 5.5E-28 T 22-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 PP4_RS09755 30d29cbbccd5caa9e706d682dd566045 793 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 786 47.469 T 22-04-2016 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 PP4_RS09755 30d29cbbccd5caa9e706d682dd566045 793 SUPERFAMILY SSF46955 404 476 1.74E-18 T 22-04-2016 IPR009061 Putative DNA-binding domain PP4_RS09755 30d29cbbccd5caa9e706d682dd566045 793 Gene3D G3DSA:3.30.56.20 403 476 3.4E-25 T 22-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 PP4_RS09755 30d29cbbccd5caa9e706d682dd566045 793 SMART SM00873 211 385 4.4E-93 T 22-04-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 PP4_RS09755 30d29cbbccd5caa9e706d682dd566045 793 SUPERFAMILY SSF56037 195 396 4.71E-72 T 22-04-2016 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 PP4_RS09755 30d29cbbccd5caa9e706d682dd566045 793 Pfam PF03483 B3/4 domain 211 384 3.8E-69 T 22-04-2016 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 PP4_RS09755 30d29cbbccd5caa9e706d682dd566045 793 SMART SM00874 403 472 5.4E-28 T 22-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 PP4_RS09755 30d29cbbccd5caa9e706d682dd566045 793 Pfam PF03484 tRNA synthetase B5 domain 406 472 1.0E-18 T 22-04-2016 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20 PP4_RS09755 30d29cbbccd5caa9e706d682dd566045 793 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 792 1.3E-254 T 22-04-2016 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 PP4_RS09755 30d29cbbccd5caa9e706d682dd566045 793 SUPERFAMILY SSF50249 36 190 1.32E-48 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS09755 30d29cbbccd5caa9e706d682dd566045 793 PANTHER PTHR10947 2 792 0.0 T 22-04-2016 PP4_RS09755 30d29cbbccd5caa9e706d682dd566045 793 PANTHER PTHR10947:SF0 2 792 0.0 T 22-04-2016 PP4_RS09755 30d29cbbccd5caa9e706d682dd566045 793 SUPERFAMILY SSF55681 468 685 4.03E-54 T 22-04-2016 PP4_RS09755 30d29cbbccd5caa9e706d682dd566045 793 Gene3D G3DSA:2.40.50.140 40 153 8.1E-44 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS09755 30d29cbbccd5caa9e706d682dd566045 793 SUPERFAMILY SSF54991 694 792 1.03E-28 T 22-04-2016 IPR005121 Phenylalanine-tRNA ligase, beta subunit, ferrodoxin-fold anticodon-binding GO:0000049|GO:0000287|GO:0004826|GO:0005524|GO:0006432|GO:0008033 KEGG: 00970+6.1.1.20 PP4_RS19605 e6e862b8396bbac046c0b0dee373716a 207 Pfam PF13417 Glutathione S-transferase, N-terminal domain 9 78 9.8E-14 T 22-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 PP4_RS19605 e6e862b8396bbac046c0b0dee373716a 207 Gene3D G3DSA:1.20.1050.10 83 204 1.3E-31 T 22-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like PP4_RS19605 e6e862b8396bbac046c0b0dee373716a 207 PANTHER PTHR11260 1 203 3.1E-72 T 22-04-2016 PP4_RS19605 e6e862b8396bbac046c0b0dee373716a 207 SUPERFAMILY SSF52833 1 79 1.62E-20 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS19605 e6e862b8396bbac046c0b0dee373716a 207 PANTHER PTHR11260:SF157 1 203 3.1E-72 T 22-04-2016 PP4_RS19605 e6e862b8396bbac046c0b0dee373716a 207 SUPERFAMILY SSF47616 82 203 3.9E-30 T 22-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like PP4_RS19605 e6e862b8396bbac046c0b0dee373716a 207 Gene3D G3DSA:3.40.30.10 1 79 3.7E-21 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS19605 e6e862b8396bbac046c0b0dee373716a 207 Pfam PF00043 Glutathione S-transferase, C-terminal domain 129 196 1.4E-5 T 22-04-2016 IPR004046 Glutathione S-transferase, C-terminal PP4_RS22860 137dc699a124a5d69d8bcbd86f01a100 232 Gene3D G3DSA:3.40.50.720 6 211 9.6E-21 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS22860 137dc699a124a5d69d8bcbd86f01a100 232 SUPERFAMILY SSF51735 5 213 4.79E-23 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS22860 137dc699a124a5d69d8bcbd86f01a100 232 Pfam PF00106 short chain dehydrogenase 7 133 2.3E-14 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS01415 89bd18a02f5bac89f611614d77284f16 781 PIRSF PIRSF000144 8 778 0.0 T 22-04-2016 IPR010046 Oxidoreductase alpha (molybdopterin) subunit GO:0008863|GO:0030151|GO:0051539 PP4_RS01415 89bd18a02f5bac89f611614d77284f16 781 Gene3D G3DSA:3.40.228.10 195 406 3.1E-53 T 22-04-2016 PP4_RS01415 89bd18a02f5bac89f611614d77284f16 781 Gene3D G3DSA:3.40.50.740 407 637 1.2E-55 T 22-04-2016 PP4_RS01415 89bd18a02f5bac89f611614d77284f16 781 Gene3D G3DSA:3.40.50.740 121 194 1.2E-55 T 22-04-2016 PP4_RS01415 89bd18a02f5bac89f611614d77284f16 781 PANTHER PTHR11615 283 781 2.9E-303 T 22-04-2016 PP4_RS01415 89bd18a02f5bac89f611614d77284f16 781 PANTHER PTHR11615 1 264 2.9E-303 T 22-04-2016 PP4_RS01415 89bd18a02f5bac89f611614d77284f16 781 Pfam PF01568 Molydopterin dinucleotide binding domain 660 764 8.4E-6 T 22-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 PP4_RS01415 89bd18a02f5bac89f611614d77284f16 781 PANTHER PTHR11615:SF114 283 781 2.9E-303 T 22-04-2016 PP4_RS01415 89bd18a02f5bac89f611614d77284f16 781 PANTHER PTHR11615:SF114 1 264 2.9E-303 T 22-04-2016 PP4_RS01415 89bd18a02f5bac89f611614d77284f16 781 Gene3D G3DSA:2.40.40.20 659 776 3.2E-5 T 22-04-2016 PP4_RS01415 89bd18a02f5bac89f611614d77284f16 781 SUPERFAMILY SSF53706 59 642 1.11E-143 T 22-04-2016 PP4_RS01415 89bd18a02f5bac89f611614d77284f16 781 SUPERFAMILY SSF50692 659 776 3.39E-13 T 22-04-2016 IPR009010 Aspartate decarboxylase-like domain PP4_RS01415 89bd18a02f5bac89f611614d77284f16 781 TIGRFAM TIGR01701 Fdhalpha-like: oxidoreductase alpha (molybdopterin) subunit 25 773 9.8E-285 T 22-04-2016 IPR010046 Oxidoreductase alpha (molybdopterin) subunit GO:0008863|GO:0030151|GO:0051539 PP4_RS01415 89bd18a02f5bac89f611614d77284f16 781 Pfam PF00384 Molybdopterin oxidoreductase 121 503 7.4E-24 T 22-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 PP4_RS03865 7ed7f9d22b8c79e89d5ab1bf02f01907 418 Gene3D G3DSA:3.30.450.90 83 180 7.4E-36 T 22-04-2016 PP4_RS03865 7ed7f9d22b8c79e89d5ab1bf02f01907 418 SUPERFAMILY SSF52540 64 369 1.44E-59 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03865 7ed7f9d22b8c79e89d5ab1bf02f01907 418 PANTHER PTHR30258:SF3 39 399 4.3E-115 T 22-04-2016 PP4_RS03865 7ed7f9d22b8c79e89d5ab1bf02f01907 418 PANTHER PTHR30258 39 399 4.3E-115 T 22-04-2016 PP4_RS03865 7ed7f9d22b8c79e89d5ab1bf02f01907 418 Gene3D G3DSA:3.40.50.300 188 396 1.0E-56 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03865 7ed7f9d22b8c79e89d5ab1bf02f01907 418 Pfam PF00437 Type II/IV secretion system protein 87 362 1.5E-86 T 22-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 PP4_RS02665 4067cd1f792081f80b1787f8bfe5fc7d 464 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 76 4.6E-15 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS02665 4067cd1f792081f80b1787f8bfe5fc7d 464 Gene3D G3DSA:3.40.640.10 130 351 1.1E-54 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS02665 4067cd1f792081f80b1787f8bfe5fc7d 464 SMART SM00345 17 76 1.9E-16 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS02665 4067cd1f792081f80b1787f8bfe5fc7d 464 SUPERFAMILY SSF53383 70 456 1.36E-74 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS02665 4067cd1f792081f80b1787f8bfe5fc7d 464 Pfam PF00155 Aminotransferase class I and II 109 440 3.8E-23 T 22-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PP4_RS02665 4067cd1f792081f80b1787f8bfe5fc7d 464 Gene3D G3DSA:1.10.10.10 11 78 1.2E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS02665 4067cd1f792081f80b1787f8bfe5fc7d 464 PANTHER PTHR11751 103 421 3.0E-52 T 22-04-2016 PP4_RS02665 4067cd1f792081f80b1787f8bfe5fc7d 464 SUPERFAMILY SSF46785 11 80 2.65E-17 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS26345 762fa38fb1493e5fa9cbcbeeeb740664 787 PANTHER PTHR34218:SF1 1 787 0.0 T 22-04-2016 PP4_RS26345 762fa38fb1493e5fa9cbcbeeeb740664 787 PIRSF PIRSF001227 1 773 1.5E-155 T 22-04-2016 IPR014395 Penicillin acylase GO:0016811 PP4_RS26345 762fa38fb1493e5fa9cbcbeeeb740664 787 Gene3D G3DSA:1.10.439.10 27 197 3.1E-52 T 22-04-2016 IPR023343 Penicillin amidase type, domain1 GO:0016811 PP4_RS26345 762fa38fb1493e5fa9cbcbeeeb740664 787 Gene3D G3DSA:2.30.120.10 322 390 3.6E-21 T 22-04-2016 PP4_RS26345 762fa38fb1493e5fa9cbcbeeeb740664 787 SUPERFAMILY SSF56235 38 772 5.14E-200 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PP4_RS26345 762fa38fb1493e5fa9cbcbeeeb740664 787 PANTHER PTHR34218 1 787 0.0 T 22-04-2016 PP4_RS26345 762fa38fb1493e5fa9cbcbeeeb740664 787 Gene3D G3DSA:3.60.20.10 246 321 8.1E-87 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PP4_RS26345 762fa38fb1493e5fa9cbcbeeeb740664 787 Gene3D G3DSA:3.60.20.10 401 632 8.1E-87 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PP4_RS26345 762fa38fb1493e5fa9cbcbeeeb740664 787 Pfam PF01804 Penicillin amidase 42 770 7.7E-192 T 22-04-2016 IPR002692 Penicillin/cephalosporin acylase GO:0016787|GO:0017000 PP4_RS07545 a9fc2337d6b0950624c0f9ac95d164ab 451 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 19 431 4.8E-114 T 22-04-2016 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 PP4_RS07545 a9fc2337d6b0950624c0f9ac95d164ab 451 PANTHER PTHR11119 15 435 7.5E-108 T 22-04-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 PP4_RS07545 a9fc2337d6b0950624c0f9ac95d164ab 451 Pfam PF00860 Permease family 22 401 5.2E-101 T 22-04-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 PP4_RS07545 a9fc2337d6b0950624c0f9ac95d164ab 451 TIGRFAM TIGR03173 pbuX: xanthine permease 26 434 2.8E-158 T 22-04-2016 IPR017588 Uric acid permease UacT-like GO:0006810|GO:0016021 PP4_RS07545 a9fc2337d6b0950624c0f9ac95d164ab 451 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 349 369 - T 22-04-2016 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 PP4_RS03280 7ba7f62463d61d1c7067997aeba306c6 445 PANTHER PTHR11206 5 433 1.1E-129 T 22-04-2016 PP4_RS03280 7ba7f62463d61d1c7067997aeba306c6 445 Pfam PF01554 MatE 248 404 8.4E-16 T 22-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 PP4_RS03280 7ba7f62463d61d1c7067997aeba306c6 445 Pfam PF01554 MatE 23 183 1.3E-22 T 22-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 PP4_RS03280 7ba7f62463d61d1c7067997aeba306c6 445 PANTHER PTHR11206:SF94 5 433 1.1E-129 T 22-04-2016 PP4_RS03280 7ba7f62463d61d1c7067997aeba306c6 445 TIGRFAM TIGR00797 matE: MATE efflux family protein 23 416 1.9E-75 T 22-04-2016 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: REACT_15518|Reactome: REACT_20633 PP4_RS02490 178c6de4301d5f8de79bb016734f507f 714 SUPERFAMILY SSF50447 318 419 2.14E-35 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain PP4_RS02490 178c6de4301d5f8de79bb016734f507f 714 SUPERFAMILY SSF50447 271 289 2.14E-35 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain PP4_RS02490 178c6de4301d5f8de79bb016734f507f 714 Gene3D G3DSA:3.30.70.240 625 712 8.2E-31 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain PP4_RS02490 178c6de4301d5f8de79bb016734f507f 714 Gene3D G3DSA:3.30.70.870 421 495 1.8E-39 T 22-04-2016 PP4_RS02490 178c6de4301d5f8de79bb016734f507f 714 PANTHER PTHR23115 318 713 0.0 T 22-04-2016 PP4_RS02490 178c6de4301d5f8de79bb016734f507f 714 PANTHER PTHR23115 1 184 0.0 T 22-04-2016 PP4_RS02490 178c6de4301d5f8de79bb016734f507f 714 PANTHER PTHR23115 261 289 0.0 T 22-04-2016 PP4_RS02490 178c6de4301d5f8de79bb016734f507f 714 Pfam PF00009 Elongation factor Tu GTP binding domain 9 287 2.9E-65 T 22-04-2016 PP4_RS02490 178c6de4301d5f8de79bb016734f507f 714 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 22-04-2016 IPR031157 Tr-type G domain, conserved site PP4_RS02490 178c6de4301d5f8de79bb016734f507f 714 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 10 187 6.2E-33 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 PP4_RS02490 178c6de4301d5f8de79bb016734f507f 714 SMART SM00889 495 620 5.6E-61 T 22-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 PP4_RS02490 178c6de4301d5f8de79bb016734f507f 714 PRINTS PR00315 GTP-binding elongation factor signature 58 66 8.0E-17 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS02490 178c6de4301d5f8de79bb016734f507f 714 PRINTS PR00315 GTP-binding elongation factor signature 137 146 8.0E-17 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS02490 178c6de4301d5f8de79bb016734f507f 714 PRINTS PR00315 GTP-binding elongation factor signature 101 112 8.0E-17 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS02490 178c6de4301d5f8de79bb016734f507f 714 PRINTS PR00315 GTP-binding elongation factor signature 12 25 8.0E-17 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS02490 178c6de4301d5f8de79bb016734f507f 714 PRINTS PR00315 GTP-binding elongation factor signature 85 95 8.0E-17 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS02490 178c6de4301d5f8de79bb016734f507f 714 SMART SM00838 622 709 4.1E-53 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain PP4_RS02490 178c6de4301d5f8de79bb016734f507f 714 Gene3D G3DSA:2.40.30.10 320 420 2.0E-39 T 22-04-2016 PP4_RS02490 178c6de4301d5f8de79bb016734f507f 714 Pfam PF03764 Elongation factor G, domain IV 494 619 1.5E-38 T 22-04-2016 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 PP4_RS02490 178c6de4301d5f8de79bb016734f507f 714 Pfam PF03144 Elongation factor Tu domain 2 339 406 2.0E-17 T 22-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 PP4_RS02490 178c6de4301d5f8de79bb016734f507f 714 PANTHER PTHR23115:SF66 318 713 0.0 T 22-04-2016 PP4_RS02490 178c6de4301d5f8de79bb016734f507f 714 PANTHER PTHR23115:SF66 1 184 0.0 T 22-04-2016 PP4_RS02490 178c6de4301d5f8de79bb016734f507f 714 PANTHER PTHR23115:SF66 261 289 0.0 T 22-04-2016 PP4_RS02490 178c6de4301d5f8de79bb016734f507f 714 SUPERFAMILY SSF52540 7 287 2.61E-104 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS02490 178c6de4301d5f8de79bb016734f507f 714 Gene3D G3DSA:3.40.50.300 7 293 1.0E-100 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS02490 178c6de4301d5f8de79bb016734f507f 714 SUPERFAMILY SSF54980 419 496 2.48E-25 T 22-04-2016 IPR009022 Elongation factor G, III-V domain PP4_RS02490 178c6de4301d5f8de79bb016734f507f 714 SUPERFAMILY SSF54980 625 711 2.16E-28 T 22-04-2016 IPR009022 Elongation factor G, III-V domain PP4_RS02490 178c6de4301d5f8de79bb016734f507f 714 Hamap MF_00054_B Elongation factor G [fusA]. 6 713 107.126 T 22-04-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 PP4_RS02490 178c6de4301d5f8de79bb016734f507f 714 Pfam PF14492 Elongation Factor G, domain II 419 493 5.9E-35 T 22-04-2016 IPR009022 Elongation factor G, III-V domain PP4_RS02490 178c6de4301d5f8de79bb016734f507f 714 Gene3D G3DSA:3.30.230.10 499 624 3.4E-39 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PP4_RS02490 178c6de4301d5f8de79bb016734f507f 714 SUPERFAMILY SSF54211 494 620 2.78E-33 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PP4_RS02490 178c6de4301d5f8de79bb016734f507f 714 Pfam PF00679 Elongation factor G C-terminus 623 707 1.0E-29 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain PP4_RS02490 178c6de4301d5f8de79bb016734f507f 714 TIGRFAM TIGR00484 EF-G: translation elongation factor G 1 713 0.0 T 22-04-2016 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 PP4_RS05005 f5a163182627fe5d727a713c66f0c2e7 300 SUPERFAMILY SSF52540 12 205 1.92E-45 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS05005 f5a163182627fe5d727a713c66f0c2e7 300 Gene3D G3DSA:3.30.300.20 195 294 4.9E-40 T 22-04-2016 IPR015946 K homology domain-like, alpha/beta PP4_RS05005 f5a163182627fe5d727a713c66f0c2e7 300 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 80 98 5.4E-7 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 PP4_RS05005 f5a163182627fe5d727a713c66f0c2e7 300 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 12 32 5.4E-7 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 PP4_RS05005 f5a163182627fe5d727a713c66f0c2e7 300 TIGRFAM TIGR00436 era: GTP-binding protein Era 10 280 4.0E-99 T 22-04-2016 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 PP4_RS05005 f5a163182627fe5d727a713c66f0c2e7 300 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 166 3.5E-29 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 PP4_RS05005 f5a163182627fe5d727a713c66f0c2e7 300 PANTHER PTHR11649 3 299 1.3E-118 T 22-04-2016 PP4_RS05005 f5a163182627fe5d727a713c66f0c2e7 300 PANTHER PTHR11649:SF3 3 299 1.3E-118 T 22-04-2016 PP4_RS05005 f5a163182627fe5d727a713c66f0c2e7 300 Hamap MF_00367 GTPase Era [era]. 7 297 36.065 T 22-04-2016 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 PP4_RS05005 f5a163182627fe5d727a713c66f0c2e7 300 Pfam PF07650 KH domain 210 285 8.0E-21 T 22-04-2016 IPR004044 K Homology domain, type 2 GO:0003723 PP4_RS05005 f5a163182627fe5d727a713c66f0c2e7 300 SUPERFAMILY SSF54814 183 297 4.58E-42 T 22-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 PP4_RS05005 f5a163182627fe5d727a713c66f0c2e7 300 Pfam PF01926 50S ribosome-binding GTPase 12 126 8.2E-24 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 PP4_RS05005 f5a163182627fe5d727a713c66f0c2e7 300 Gene3D G3DSA:3.40.50.300 10 194 5.1E-44 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS21055 548aff08775cdfab5dd459782a687cae 900 Hamap MF_00277 Bifunctional uridylyltransferase/uridylyl-removing enzyme [glnD]. 1 895 340.551 T 22-04-2016 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 PP4_RS21055 548aff08775cdfab5dd459782a687cae 900 SUPERFAMILY SSF81301 10 181 2.13E-26 T 22-04-2016 PP4_RS21055 548aff08775cdfab5dd459782a687cae 900 Pfam PF01909 Nucleotidyltransferase domain 74 115 3.9E-6 T 22-04-2016 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 PP4_RS21055 548aff08775cdfab5dd459782a687cae 900 SUPERFAMILY SSF109604 426 591 2.23E-14 T 22-04-2016 PP4_RS21055 548aff08775cdfab5dd459782a687cae 900 Pfam PF01966 HD domain 481 590 1.3E-11 T 22-04-2016 IPR006674 HD domain PP4_RS21055 548aff08775cdfab5dd459782a687cae 900 Gene3D G3DSA:1.10.3210.10 431 620 3.8E-23 T 22-04-2016 IPR006674 HD domain PP4_RS21055 548aff08775cdfab5dd459782a687cae 900 SUPERFAMILY SSF81593 195 315 2.12E-11 T 22-04-2016 PP4_RS21055 548aff08775cdfab5dd459782a687cae 900 SMART SM00471 457 604 8.0E-10 T 22-04-2016 IPR003607 HD/PDEase domain PP4_RS21055 548aff08775cdfab5dd459782a687cae 900 PIRSF PIRSF006288 12 893 0.0 T 22-04-2016 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 PP4_RS21055 548aff08775cdfab5dd459782a687cae 900 PANTHER PTHR13734:SF45 104 698 3.8E-125 T 22-04-2016 PP4_RS21055 548aff08775cdfab5dd459782a687cae 900 SUPERFAMILY SSF55021 702 768 2.58E-5 T 22-04-2016 PP4_RS21055 548aff08775cdfab5dd459782a687cae 900 Gene3D G3DSA:3.30.460.10 78 172 6.7E-11 T 22-04-2016 PP4_RS21055 548aff08775cdfab5dd459782a687cae 900 Pfam PF01842 ACT domain 815 864 1.7E-6 T 22-04-2016 IPR002912 ACT domain GO:0008152|GO:0016597 PP4_RS21055 548aff08775cdfab5dd459782a687cae 900 PANTHER PTHR13734 104 698 3.8E-125 T 22-04-2016 PP4_RS21055 548aff08775cdfab5dd459782a687cae 900 SUPERFAMILY SSF55021 814 878 6.11E-10 T 22-04-2016 PP4_RS21055 548aff08775cdfab5dd459782a687cae 900 Gene3D G3DSA:3.30.70.260 815 875 4.4E-9 T 22-04-2016 PP4_RS21055 548aff08775cdfab5dd459782a687cae 900 TIGRFAM TIGR01693 UTase_glnD: protein-P-II uridylyltransferase 38 885 0.0 T 22-04-2016 IPR010043 Bifunctional uridylyltransferase/uridylyl-removing enzyme GO:0006807|GO:0008773 PP4_RS21055 548aff08775cdfab5dd459782a687cae 900 Pfam PF08335 GlnD PII-uridylyltransferase 185 322 3.0E-35 T 22-04-2016 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 PP4_RS02730 1a4ce226f7cab29a4617e0bfe4353857 480 PRINTS PR00175 Sodium/alanine symporter signature 294 312 6.6E-47 T 22-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 PP4_RS02730 1a4ce226f7cab29a4617e0bfe4353857 480 PRINTS PR00175 Sodium/alanine symporter signature 84 106 6.6E-47 T 22-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 PP4_RS02730 1a4ce226f7cab29a4617e0bfe4353857 480 PRINTS PR00175 Sodium/alanine symporter signature 340 362 6.6E-47 T 22-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 PP4_RS02730 1a4ce226f7cab29a4617e0bfe4353857 480 PRINTS PR00175 Sodium/alanine symporter signature 400 420 6.6E-47 T 22-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 PP4_RS02730 1a4ce226f7cab29a4617e0bfe4353857 480 PRINTS PR00175 Sodium/alanine symporter signature 175 193 6.6E-47 T 22-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 PP4_RS02730 1a4ce226f7cab29a4617e0bfe4353857 480 PRINTS PR00175 Sodium/alanine symporter signature 203 222 6.6E-47 T 22-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 PP4_RS02730 1a4ce226f7cab29a4617e0bfe4353857 480 TIGRFAM TIGR00835 agcS: amino acid carrier protein 14 431 2.4E-141 T 22-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 PP4_RS02730 1a4ce226f7cab29a4617e0bfe4353857 480 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 84 99 - T 22-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 PP4_RS02730 1a4ce226f7cab29a4617e0bfe4353857 480 PANTHER PTHR30330 1 465 8.6E-249 T 22-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 PP4_RS02730 1a4ce226f7cab29a4617e0bfe4353857 480 PANTHER PTHR30330:SF1 1 465 8.6E-249 T 22-04-2016 PP4_RS02730 1a4ce226f7cab29a4617e0bfe4353857 480 Pfam PF01235 Sodium:alanine symporter family 50 444 1.1E-145 T 22-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 PP4_RS21595 18ca813b600a18e6a2bed08f6d9759f6 292 SUPERFAMILY SSF46785 3 88 6.81E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS21595 18ca813b600a18e6a2bed08f6d9759f6 292 Gene3D G3DSA:3.40.190.10 180 265 8.8E-21 T 22-04-2016 PP4_RS21595 18ca813b600a18e6a2bed08f6d9759f6 292 Gene3D G3DSA:3.40.190.10 91 179 5.8E-19 T 22-04-2016 PP4_RS21595 18ca813b600a18e6a2bed08f6d9759f6 292 Gene3D G3DSA:1.10.10.10 3 88 1.4E-30 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS21595 18ca813b600a18e6a2bed08f6d9759f6 292 PANTHER PTHR30346 1 291 1.8E-83 T 22-04-2016 PP4_RS21595 18ca813b600a18e6a2bed08f6d9759f6 292 SUPERFAMILY SSF53850 88 290 6.84E-28 T 22-04-2016 PP4_RS21595 18ca813b600a18e6a2bed08f6d9759f6 292 PANTHER PTHR30346:SF6 1 291 1.8E-83 T 22-04-2016 PP4_RS21595 18ca813b600a18e6a2bed08f6d9759f6 292 Pfam PF03466 LysR substrate binding domain 88 289 5.6E-33 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS21595 18ca813b600a18e6a2bed08f6d9759f6 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 6.7E-25 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS21595 18ca813b600a18e6a2bed08f6d9759f6 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 5.9E-11 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS21595 18ca813b600a18e6a2bed08f6d9759f6 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 5.9E-11 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS21595 18ca813b600a18e6a2bed08f6d9759f6 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 5.9E-11 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS04935 ff192858cd24aceebf9d6b8da62a0109 223 SMART SM00448 1 112 1.2E-38 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS04935 ff192858cd24aceebf9d6b8da62a0109 223 PANTHER PTHR26402:SF316 1 219 1.8E-83 T 22-04-2016 PP4_RS04935 ff192858cd24aceebf9d6b8da62a0109 223 Gene3D G3DSA:3.40.50.2300 1 123 1.8E-37 T 22-04-2016 PP4_RS04935 ff192858cd24aceebf9d6b8da62a0109 223 SUPERFAMILY SSF52172 1 173 5.27E-39 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS04935 ff192858cd24aceebf9d6b8da62a0109 223 SMART SM00862 145 218 9.5E-20 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS04935 ff192858cd24aceebf9d6b8da62a0109 223 Pfam PF00486 Transcriptional regulatory protein, C terminal 146 218 5.0E-19 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS04935 ff192858cd24aceebf9d6b8da62a0109 223 Gene3D G3DSA:1.10.10.10 125 220 8.9E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS04935 ff192858cd24aceebf9d6b8da62a0109 223 Pfam PF00072 Response regulator receiver domain 3 112 2.4E-26 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS04935 ff192858cd24aceebf9d6b8da62a0109 223 PANTHER PTHR26402 1 219 1.8E-83 T 22-04-2016 PP4_RS19245 4d5457f9b2f8770983798cabc399b73c 276 Pfam PF10001 Uncharacterized protein conserved in bacteria (DUF2242) 53 173 1.2E-54 T 22-04-2016 IPR018718 Protein of unknown function DUF2242 PP4_RS01465 96c81d972a892dcd96652b473b7219ba 368 TIGRFAM TIGR03380 agmatine_aguA: agmatine deiminase 6 364 4.6E-174 T 22-04-2016 IPR017754 Agmatine deiminase GO:0009446|GO:0047632 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 PP4_RS01465 96c81d972a892dcd96652b473b7219ba 368 PANTHER PTHR31377:SF2 1 368 6.5E-187 T 22-04-2016 PP4_RS01465 96c81d972a892dcd96652b473b7219ba 368 SUPERFAMILY SSF55909 2 364 4.1E-142 T 22-04-2016 PP4_RS01465 96c81d972a892dcd96652b473b7219ba 368 PANTHER PTHR31377 1 368 6.5E-187 T 22-04-2016 PP4_RS01465 96c81d972a892dcd96652b473b7219ba 368 Hamap MF_01841 Agmatine deiminase [aguA]. 6 364 62.126 T 22-04-2016 IPR017754 Agmatine deiminase GO:0009446|GO:0047632 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 PP4_RS01465 96c81d972a892dcd96652b473b7219ba 368 Gene3D G3DSA:3.75.10.10 3 365 5.2E-152 T 22-04-2016 PP4_RS01465 96c81d972a892dcd96652b473b7219ba 368 Pfam PF04371 Porphyromonas-type peptidyl-arginine deiminase 14 363 1.6E-125 T 22-04-2016 IPR007466 Peptidyl-arginine deiminase, Porphyromonas-type GO:0004668|GO:0009446 KEGG: 00330+3.5.3.12|MetaCyc: PWY-43 PP4_RS16305 e30480d88d7eca5ffde05e32e122eb9d 560 PANTHER PTHR11632:SF59 201 552 4.5E-176 T 22-04-2016 PP4_RS16305 e30480d88d7eca5ffde05e32e122eb9d 560 PANTHER PTHR11632:SF59 4 129 4.5E-176 T 22-04-2016 PP4_RS16305 e30480d88d7eca5ffde05e32e122eb9d 560 Gene3D G3DSA:3.50.50.60 206 311 2.4E-55 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS16305 e30480d88d7eca5ffde05e32e122eb9d 560 Gene3D G3DSA:3.50.50.60 4 138 2.4E-55 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS16305 e30480d88d7eca5ffde05e32e122eb9d 560 Gene3D G3DSA:3.50.50.60 495 554 2.4E-55 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS16305 e30480d88d7eca5ffde05e32e122eb9d 560 SUPERFAMILY SSF56425 333 499 4.19E-32 T 22-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain PP4_RS16305 e30480d88d7eca5ffde05e32e122eb9d 560 Pfam PF00890 FAD binding domain 7 540 3.4E-105 T 22-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain PP4_RS16305 e30480d88d7eca5ffde05e32e122eb9d 560 Gene3D G3DSA:3.90.700.10 336 490 3.4E-29 T 22-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain PP4_RS16305 e30480d88d7eca5ffde05e32e122eb9d 560 SUPERFAMILY SSF51905 1 58 1.85E-38 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS16305 e30480d88d7eca5ffde05e32e122eb9d 560 SUPERFAMILY SSF51905 176 308 1.85E-38 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS16305 e30480d88d7eca5ffde05e32e122eb9d 560 SUPERFAMILY SSF51905 86 124 1.85E-38 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS16305 e30480d88d7eca5ffde05e32e122eb9d 560 SUPERFAMILY SSF51905 493 557 1.85E-38 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS16305 e30480d88d7eca5ffde05e32e122eb9d 560 PANTHER PTHR11632 201 552 4.5E-176 T 22-04-2016 PP4_RS16305 e30480d88d7eca5ffde05e32e122eb9d 560 PANTHER PTHR11632 4 129 4.5E-176 T 22-04-2016 PP4_RS26485 38f1e1ff6db721a4d6a6243e54cb0800 458 SUPERFAMILY SSF54368 11 119 2.49E-16 T 22-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS26485 38f1e1ff6db721a4d6a6243e54cb0800 458 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 257 272 - T 22-04-2016 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS26485 38f1e1ff6db721a4d6a6243e54cb0800 458 PANTHER PTHR20852:SF7 12 458 7.2E-146 T 22-04-2016 PP4_RS26485 38f1e1ff6db721a4d6a6243e54cb0800 458 SMART SM01230 120 376 4.7E-94 T 22-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS26485 38f1e1ff6db721a4d6a6243e54cb0800 458 PANTHER PTHR20852 12 458 7.2E-146 T 22-04-2016 PP4_RS26485 38f1e1ff6db721a4d6a6243e54cb0800 458 Pfam PF00120 Glutamine synthetase, catalytic domain 121 454 5.1E-108 T 22-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS26485 38f1e1ff6db721a4d6a6243e54cb0800 458 SUPERFAMILY SSF55931 122 456 1.28E-99 T 22-04-2016 PP4_RS26485 38f1e1ff6db721a4d6a6243e54cb0800 458 Gene3D G3DSA:3.30.590.10 124 444 1.4E-93 T 22-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 PP4_RS26485 38f1e1ff6db721a4d6a6243e54cb0800 458 Gene3D G3DSA:3.10.20.70 11 123 7.6E-18 T 22-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS03545 07bb7aae2bfa4ddef2320279f9cb809a 104 SUPERFAMILY SSF54909 5 98 2.52E-29 T 22-04-2016 IPR011008 Dimeric alpha-beta barrel PP4_RS03545 07bb7aae2bfa4ddef2320279f9cb809a 104 Pfam PF03992 Antibiotic biosynthesis monooxygenase 9 79 1.2E-20 T 22-04-2016 IPR007138 Antibiotic biosynthesis monooxygenase domain PP4_RS03545 07bb7aae2bfa4ddef2320279f9cb809a 104 Gene3D G3DSA:3.30.70.900 2 97 3.9E-31 T 22-04-2016 PP4_RS03545 07bb7aae2bfa4ddef2320279f9cb809a 104 PANTHER PTHR33336 8 95 6.0E-22 T 22-04-2016 PP4_RS22855 ffa32338d1735f9bffcbcf215fa23ad1 480 PANTHER PTHR11455 1 476 7.5E-197 T 22-04-2016 PP4_RS22855 ffa32338d1735f9bffcbcf215fa23ad1 480 SUPERFAMILY SSF48173 197 470 1.05E-103 T 22-04-2016 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain PP4_RS22855 ffa32338d1735f9bffcbcf215fa23ad1 480 SUPERFAMILY SSF52425 2 188 1.16E-48 T 22-04-2016 IPR006050 DNA photolyase, N-terminal PP4_RS22855 ffa32338d1735f9bffcbcf215fa23ad1 480 Pfam PF00875 DNA photolyase 3 166 1.1E-40 T 22-04-2016 IPR006050 DNA photolyase, N-terminal PP4_RS22855 ffa32338d1735f9bffcbcf215fa23ad1 480 Gene3D G3DSA:1.10.579.10 286 469 3.7E-75 T 22-04-2016 PP4_RS22855 ffa32338d1735f9bffcbcf215fa23ad1 480 PANTHER PTHR11455:SF18 1 476 7.5E-197 T 22-04-2016 PP4_RS22855 ffa32338d1735f9bffcbcf215fa23ad1 480 Gene3D G3DSA:3.40.50.620 2 145 2.5E-40 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS22855 ffa32338d1735f9bffcbcf215fa23ad1 480 PRINTS PR00147 DNA photolyase signature 384 398 1.5E-24 T 22-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 PP4_RS22855 ffa32338d1735f9bffcbcf215fa23ad1 480 PRINTS PR00147 DNA photolyase signature 345 363 1.5E-24 T 22-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 PP4_RS22855 ffa32338d1735f9bffcbcf215fa23ad1 480 PRINTS PR00147 DNA photolyase signature 325 341 1.5E-24 T 22-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 PP4_RS22855 ffa32338d1735f9bffcbcf215fa23ad1 480 PRINTS PR00147 DNA photolyase signature 141 157 1.5E-24 T 22-04-2016 IPR002081 Cryptochrome/DNA photolyase class 1 PP4_RS22855 ffa32338d1735f9bffcbcf215fa23ad1 480 ProSitePatterns PS00394 DNA photolyases class 1 signature 1. 325 337 - T 22-04-2016 IPR018394 Cryptochrome/DNA photolyase class 1, conserved site, C-terminal PP4_RS22855 ffa32338d1735f9bffcbcf215fa23ad1 480 Pfam PF03441 FAD binding domain of DNA photolyase 275 468 2.4E-82 T 22-04-2016 IPR005101 Cryptochrome/DNA photolyase, FAD-binding domain PP4_RS22855 ffa32338d1735f9bffcbcf215fa23ad1 480 Gene3D G3DSA:1.25.40.80 146 285 8.4E-39 T 22-04-2016 PP4_RS08730 e079a75318be604240720eda3295407f 206 Gene3D G3DSA:1.10.357.10 68 204 2.5E-50 T 22-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PP4_RS08730 e079a75318be604240720eda3295407f 206 PANTHER PTHR30055:SF42 1 205 2.6E-95 T 22-04-2016 PP4_RS08730 e079a75318be604240720eda3295407f 206 Pfam PF08362 YcdC-like protein, C-terminal region 63 204 2.3E-49 T 22-04-2016 IPR013573 Transcription regulator YcdC, C-terminal GO:0045892 PP4_RS08730 e079a75318be604240720eda3295407f 206 SUPERFAMILY SSF46689 7 73 4.82E-19 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS08730 e079a75318be604240720eda3295407f 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 2.4E-9 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS08730 e079a75318be604240720eda3295407f 206 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 2.4E-9 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS08730 e079a75318be604240720eda3295407f 206 Pfam PF00440 Bacterial regulatory proteins, tetR family 16 62 7.1E-17 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS08730 e079a75318be604240720eda3295407f 206 PANTHER PTHR30055 1 205 2.6E-95 T 22-04-2016 PP4_RS08730 e079a75318be604240720eda3295407f 206 SUPERFAMILY SSF48498 81 204 8.34E-36 T 22-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal PP4_RS08730 e079a75318be604240720eda3295407f 206 Gene3D G3DSA:1.10.10.60 45 67 3.7E-7 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS08730 e079a75318be604240720eda3295407f 206 Gene3D G3DSA:1.10.10.60 9 44 7.7E-16 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS08915 fd3f3095b72388388dce6bc1f613174a 426 Gene3D G3DSA:3.30.930.10 105 423 3.0E-141 T 22-04-2016 PP4_RS08915 fd3f3095b72388388dce6bc1f613174a 426 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 424 40.881 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 PP4_RS08915 fd3f3095b72388388dce6bc1f613174a 426 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 218 402 5.4E-36 T 22-04-2016 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS08915 fd3f3095b72388388dce6bc1f613174a 426 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 419 2.5E-167 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 PP4_RS08915 fd3f3095b72388388dce6bc1f613174a 426 PRINTS PR00981 Seryl-tRNA synthetase signature 353 369 1.1E-33 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 PP4_RS08915 fd3f3095b72388388dce6bc1f613174a 426 PRINTS PR00981 Seryl-tRNA synthetase signature 335 351 1.1E-33 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 PP4_RS08915 fd3f3095b72388388dce6bc1f613174a 426 PRINTS PR00981 Seryl-tRNA synthetase signature 318 331 1.1E-33 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 PP4_RS08915 fd3f3095b72388388dce6bc1f613174a 426 PRINTS PR00981 Seryl-tRNA synthetase signature 278 291 1.1E-33 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 PP4_RS08915 fd3f3095b72388388dce6bc1f613174a 426 PRINTS PR00981 Seryl-tRNA synthetase signature 266 278 1.1E-33 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 PP4_RS08915 fd3f3095b72388388dce6bc1f613174a 426 Gene3D G3DSA:1.10.287.40 1 104 2.1E-24 T 22-04-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|UniPathway: UPA00906 PP4_RS08915 fd3f3095b72388388dce6bc1f613174a 426 SUPERFAMILY SSF46589 1 112 9.94E-29 T 22-04-2016 IPR010978 tRNA-binding arm GO:0000166 Reactome: REACT_71 PP4_RS08915 fd3f3095b72388388dce6bc1f613174a 426 PIRSF PIRSF001529 1 426 9.5E-179 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 PP4_RS08915 fd3f3095b72388388dce6bc1f613174a 426 SUPERFAMILY SSF55681 116 422 4.15E-99 T 22-04-2016 PP4_RS08915 fd3f3095b72388388dce6bc1f613174a 426 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 107 1.4E-29 T 22-04-2016 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|UniPathway: UPA00906 PP4_RS08915 fd3f3095b72388388dce6bc1f613174a 426 PANTHER PTHR11778 1 425 8.6E-209 T 22-04-2016 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: REACT_71|UniPathway: UPA00906 PP4_RS07205 85830e669542e990bde95dfbeb502cc8 451 TIGRFAM TIGR01026 fliI_yscN: ATPase, FliI/YscN family 27 446 2.9E-171 T 22-04-2016 IPR005714 ATPase, type III secretion system, FliI/YscN GO:0005737|GO:0009058|GO:0016887|GO:0030254|GO:0030257 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PP4_RS07205 85830e669542e990bde95dfbeb502cc8 451 Gene3D G3DSA:3.40.50.300 102 368 3.9E-89 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS07205 85830e669542e990bde95dfbeb502cc8 451 SUPERFAMILY SSF52540 103 372 4.7E-96 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS07205 85830e669542e990bde95dfbeb502cc8 451 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 357 366 - T 22-04-2016 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PP4_RS07205 85830e669542e990bde95dfbeb502cc8 451 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 155 366 1.5E-72 T 22-04-2016 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PP4_RS07205 85830e669542e990bde95dfbeb502cc8 451 PANTHER PTHR15184 5 442 1.6E-226 T 22-04-2016 PP4_RS07205 85830e669542e990bde95dfbeb502cc8 451 PANTHER PTHR15184:SF9 5 442 1.6E-226 T 22-04-2016 IPR032463 ATPase, type III secretion system, FliI GO:0016887|GO:0030257|GO:0044780 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PP4_RS07205 85830e669542e990bde95dfbeb502cc8 451 SMART SM00382 167 350 4.4E-4 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS07205 85830e669542e990bde95dfbeb502cc8 451 TIGRFAM TIGR03496 FliI_clade1: flagellar protein export ATPase FliI 29 444 8.0E-193 T 22-04-2016 IPR020005 Flagellar export ATPase FliI, clade 1 GO:0016887|GO:0044780|GO:0071973 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PP4_RS12200 ec0c293169272b88c24b24545797ce8f 1001 Pfam PF13283 Bacteriophage N adsorption protein A C-term 857 996 7.0E-24 T 22-04-2016 IPR025137 Bacteriophage N4 adsorption protein A, C-terminal PP4_RS12200 ec0c293169272b88c24b24545797ce8f 1001 SUPERFAMILY SSF48452 589 697 6.83E-6 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS12200 ec0c293169272b88c24b24545797ce8f 1001 Gene3D G3DSA:1.25.40.10 371 416 7.9E-6 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS12200 ec0c293169272b88c24b24545797ce8f 1001 Gene3D G3DSA:1.25.40.10 40 108 7.9E-6 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS12200 ec0c293169272b88c24b24545797ce8f 1001 Gene3D G3DSA:1.25.40.10 494 692 7.9E-6 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS08920 51ea552db595342c2a517ddf784d887d 463 Pfam PF13241 Putative NAD(P)-binding 6 115 2.5E-26 T 22-04-2016 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 PP4_RS08920 51ea552db595342c2a517ddf784d887d 463 Gene3D G3DSA:1.10.8.210 151 209 4.1E-22 T 22-04-2016 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 PP4_RS08920 51ea552db595342c2a517ddf784d887d 463 PIRSF PIRSF036426 1 463 9.7E-205 T 22-04-2016 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 PP4_RS08920 51ea552db595342c2a517ddf784d887d 463 Hamap MF_01646 Siroheme synthase [cysG]. 1 460 53.956 T 22-04-2016 IPR012409 Sirohaem synthase GO:0004851|GO:0009236|GO:0019354|GO:0043115|GO:0051266|GO:0051287|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 PP4_RS08920 51ea552db595342c2a517ddf784d887d 463 PANTHER PTHR21091:SF16 165 454 1.7E-87 T 22-04-2016 PP4_RS08920 51ea552db595342c2a517ddf784d887d 463 Pfam PF10414 Sirohaem synthase dimerisation region 150 205 1.1E-20 T 22-04-2016 IPR019478 Sirohaem synthase, dimerisation domain GO:0006779|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 PP4_RS08920 51ea552db595342c2a517ddf784d887d 463 Gene3D G3DSA:3.30.950.10 332 459 6.1E-51 T 22-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 PP4_RS08920 51ea552db595342c2a517ddf784d887d 463 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 216 451 1.3E-97 T 22-04-2016 IPR006366 Uroporphyrin-III C-methyltransferase GO:0006779|GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 PP4_RS08920 51ea552db595342c2a517ddf784d887d 463 PANTHER PTHR21091 165 454 1.7E-87 T 22-04-2016 PP4_RS08920 51ea552db595342c2a517ddf784d887d 463 TIGRFAM TIGR01470 cysG_Nterm: siroheme synthase, N-terminal domain 4 205 1.2E-76 T 22-04-2016 IPR006367 Sirohaem synthase, N-terminal GO:0006779|GO:0019354|GO:0043115|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 PP4_RS08920 51ea552db595342c2a517ddf784d887d 463 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 218 427 4.0E-53 T 22-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 PP4_RS08920 51ea552db595342c2a517ddf784d887d 463 Pfam PF14824 Sirohaem biosynthesis protein central 119 145 4.3E-8 T 22-04-2016 IPR028281 Siroheme synthase, central domain KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 PP4_RS08920 51ea552db595342c2a517ddf784d887d 463 Gene3D G3DSA:3.30.160.110 114 148 2.4E-19 T 22-04-2016 PP4_RS08920 51ea552db595342c2a517ddf784d887d 463 SUPERFAMILY SSF51735 1 113 8.7E-26 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS08920 51ea552db595342c2a517ddf784d887d 463 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 296 329 - T 22-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 PP4_RS08920 51ea552db595342c2a517ddf784d887d 463 Gene3D G3DSA:3.40.50.720 1 113 4.2E-35 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS08920 51ea552db595342c2a517ddf784d887d 463 SUPERFAMILY SSF53790 216 458 8.77E-84 T 22-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 PP4_RS08920 51ea552db595342c2a517ddf784d887d 463 Gene3D G3DSA:3.40.1010.10 216 331 1.7E-48 T 22-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 PP4_RS08920 51ea552db595342c2a517ddf784d887d 463 SUPERFAMILY SSF75615 114 209 1.26E-27 T 22-04-2016 PP4_RS02305 ec1a087eeb7764d1715259e578c47029 234 Gene3D G3DSA:3.90.1550.10 9 228 3.3E-52 T 22-04-2016 PP4_RS02305 ec1a087eeb7764d1715259e578c47029 234 SUPERFAMILY SSF55681 8 228 1.99E-44 T 22-04-2016 PP4_RS23415 ef189bff0042df5d9f8e1195cce3f5b8 316 PANTHER PTHR22749:SF0 1 306 4.7E-133 T 22-04-2016 PP4_RS23415 ef189bff0042df5d9f8e1195cce3f5b8 316 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 20 304 4.5E-95 T 22-04-2016 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 PP4_RS23415 ef189bff0042df5d9f8e1195cce3f5b8 316 SUPERFAMILY SSF52374 15 175 1.39E-33 T 22-04-2016 PP4_RS23415 ef189bff0042df5d9f8e1195cce3f5b8 316 PIRSF PIRSF004491 1 313 5.3E-102 T 22-04-2016 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 PP4_RS23415 ef189bff0042df5d9f8e1195cce3f5b8 316 Pfam PF01687 Riboflavin kinase 184 304 2.3E-35 T 22-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 PP4_RS23415 ef189bff0042df5d9f8e1195cce3f5b8 316 PANTHER PTHR22749 1 306 4.7E-133 T 22-04-2016 IPR023468 Riboflavin kinase KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|UniPathway: UPA00276 PP4_RS23415 ef189bff0042df5d9f8e1195cce3f5b8 316 Gene3D G3DSA:2.40.30.30 180 311 8.4E-38 T 22-04-2016 IPR023465 Riboflavin kinase domain GO:0008531|GO:0009231 PP4_RS23415 ef189bff0042df5d9f8e1195cce3f5b8 316 SMART SM00904 183 307 6.7E-58 T 22-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 PP4_RS23415 ef189bff0042df5d9f8e1195cce3f5b8 316 Pfam PF06574 FAD synthetase 12 166 4.6E-54 T 22-04-2016 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00276|UniPathway: UPA00277 PP4_RS23415 ef189bff0042df5d9f8e1195cce3f5b8 316 Gene3D G3DSA:3.40.50.620 1 179 6.4E-66 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS23415 ef189bff0042df5d9f8e1195cce3f5b8 316 SUPERFAMILY SSF82114 174 309 3.05E-43 T 22-04-2016 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 PP4_RS18850 5a39c9cc506cd9b16aa1517bad0d0932 205 PANTHER PTHR26402:SF151 2 202 1.4E-57 T 22-04-2016 PP4_RS18850 5a39c9cc506cd9b16aa1517bad0d0932 205 PANTHER PTHR26402 2 202 1.4E-57 T 22-04-2016 PP4_RS18850 5a39c9cc506cd9b16aa1517bad0d0932 205 SMART SM00448 2 114 5.5E-30 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS18850 5a39c9cc506cd9b16aa1517bad0d0932 205 SUPERFAMILY SSF52172 1 153 1.01E-32 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS18850 5a39c9cc506cd9b16aa1517bad0d0932 205 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 175 187 7.1E-11 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS18850 5a39c9cc506cd9b16aa1517bad0d0932 205 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 145 159 7.1E-11 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS18850 5a39c9cc506cd9b16aa1517bad0d0932 205 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 159 175 7.1E-11 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS18850 5a39c9cc506cd9b16aa1517bad0d0932 205 Gene3D G3DSA:3.40.50.2300 2 119 1.6E-32 T 22-04-2016 PP4_RS18850 5a39c9cc506cd9b16aa1517bad0d0932 205 SUPERFAMILY SSF46894 127 204 1.77E-17 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS18850 5a39c9cc506cd9b16aa1517bad0d0932 205 Pfam PF00196 Bacterial regulatory proteins, luxR family 147 199 1.7E-17 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS18850 5a39c9cc506cd9b16aa1517bad0d0932 205 Pfam PF00072 Response regulator receiver domain 4 115 3.2E-27 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS18850 5a39c9cc506cd9b16aa1517bad0d0932 205 SMART SM00421 142 199 8.0E-15 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS18850 5a39c9cc506cd9b16aa1517bad0d0932 205 ProSitePatterns PS00622 LuxR-type HTH domain signature. 159 186 - T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS18850 5a39c9cc506cd9b16aa1517bad0d0932 205 Gene3D G3DSA:1.10.10.10 120 205 4.1E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS12665 6110c00cf69c92a1b48d41b5d904d143 325 PANTHER PTHR10366 2 324 3.2E-111 T 22-04-2016 PP4_RS12665 6110c00cf69c92a1b48d41b5d904d143 325 Gene3D G3DSA:3.40.50.720 1 163 7.6E-47 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS12665 6110c00cf69c92a1b48d41b5d904d143 325 PANTHER PTHR10366:SF39 2 324 3.2E-111 T 22-04-2016 PP4_RS12665 6110c00cf69c92a1b48d41b5d904d143 325 TIGRFAM TIGR01179 galE: UDP-glucose 4-epimerase GalE 3 316 2.8E-126 T 22-04-2016 IPR005886 UDP-glucose 4-epimerase GalE GO:0003978|GO:0006012 KEGG: 00052+5.1.3.2|KEGG: 00520+5.1.3.2|MetaCyc: PWY-3821|MetaCyc: PWY-6317|MetaCyc: PWY-6397|MetaCyc: PWY-6527|MetaCyc: PWY-7328|MetaCyc: PWY-7344|UniPathway: UPA00214 PP4_RS12665 6110c00cf69c92a1b48d41b5d904d143 325 Pfam PF01370 NAD dependent epimerase/dehydratase family 4 246 1.9E-51 T 22-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 PP4_RS12665 6110c00cf69c92a1b48d41b5d904d143 325 Gene3D G3DSA:3.90.25.10 248 320 2.8E-45 T 22-04-2016 PP4_RS12665 6110c00cf69c92a1b48d41b5d904d143 325 Gene3D G3DSA:3.90.25.10 164 216 2.8E-45 T 22-04-2016 PP4_RS12665 6110c00cf69c92a1b48d41b5d904d143 325 SUPERFAMILY SSF51735 1 319 9.51E-95 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS25405 ff6054513412040f23922eb2abaaa8f0 133 PANTHER PTHR11049:SF13 1 113 1.5E-62 T 22-04-2016 PP4_RS25405 ff6054513412040f23922eb2abaaa8f0 133 Gene3D G3DSA:3.10.129.10 3 119 5.0E-23 T 22-04-2016 IPR029069 HotDog domain PP4_RS25405 ff6054513412040f23922eb2abaaa8f0 133 Pfam PF03061 Thioesterase superfamily 17 92 6.6E-13 T 22-04-2016 IPR006683 Thioesterase domain PP4_RS25405 ff6054513412040f23922eb2abaaa8f0 133 SUPERFAMILY SSF54637 4 121 3.48E-24 T 22-04-2016 IPR029069 HotDog domain PP4_RS25405 ff6054513412040f23922eb2abaaa8f0 133 PANTHER PTHR11049 1 113 1.5E-62 T 22-04-2016 PP4_RS03580 09cdbc4644d3f6d369b31442cadcee99 239 TIGRFAM TIGR02422 protocat_beta: protocatechuate 3,4-dioxygenase, beta subunit 17 238 3.0E-111 T 22-04-2016 IPR012785 Protocatechuate 3,4-dioxygenase, beta subunit GO:0005506|GO:0018578|GO:0019619|GO:0055114 KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3|UniPathway: UPA00157 PP4_RS03580 09cdbc4644d3f6d369b31442cadcee99 239 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 81 109 - T 22-04-2016 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 PP4_RS03580 09cdbc4644d3f6d369b31442cadcee99 239 PANTHER PTHR33711:SF1 3 238 1.2E-128 T 22-04-2016 PP4_RS03580 09cdbc4644d3f6d369b31442cadcee99 239 Pfam PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal 12 43 3.2E-15 T 22-04-2016 IPR024756 Protocatechuate 3,4-dioxygenase beta subunit, N-terminal KEGG: 00362+1.13.11.3|KEGG: 00624+1.13.11.3|UniPathway: UPA00157 PP4_RS03580 09cdbc4644d3f6d369b31442cadcee99 239 PANTHER PTHR33711 3 238 1.2E-128 T 22-04-2016 PP4_RS03580 09cdbc4644d3f6d369b31442cadcee99 239 SUPERFAMILY SSF49482 11 238 6.15E-75 T 22-04-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 PP4_RS03580 09cdbc4644d3f6d369b31442cadcee99 239 Pfam PF00775 Dioxygenase 48 230 5.6E-62 T 22-04-2016 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 PP4_RS03580 09cdbc4644d3f6d369b31442cadcee99 239 Gene3D G3DSA:2.60.130.10 10 238 9.9E-79 T 22-04-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 PP4_RS08665 c50ad1efca21302efdba40270da8703b 736 Gene3D G3DSA:2.60.40.1180 633 735 9.0E-38 T 22-04-2016 IPR013780 Glycosyl hydrolase, all-beta PP4_RS08665 c50ad1efca21302efdba40270da8703b 736 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 638 735 2.1E-20 T 22-04-2016 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|Reactome: REACT_474 PP4_RS08665 c50ad1efca21302efdba40270da8703b 736 SUPERFAMILY SSF51011 633 735 8.02E-34 T 22-04-2016 PP4_RS08665 c50ad1efca21302efdba40270da8703b 736 SUPERFAMILY SSF81296 142 204 6.79E-11 T 22-04-2016 IPR014756 Immunoglobulin E-set PP4_RS08665 c50ad1efca21302efdba40270da8703b 736 PANTHER PTHR10357:SF160 56 735 0.0 T 22-04-2016 PP4_RS08665 c50ad1efca21302efdba40270da8703b 736 SMART SM00642 255 606 9.4E-7 T 22-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 PP4_RS08665 c50ad1efca21302efdba40270da8703b 736 PANTHER PTHR10357 56 735 0.0 T 22-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 PP4_RS08665 c50ad1efca21302efdba40270da8703b 736 SUPERFAMILY SSF51445 184 626 2.16E-117 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily PP4_RS08665 c50ad1efca21302efdba40270da8703b 736 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 113 734 1.4E-282 T 22-04-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 PP4_RS08665 c50ad1efca21302efdba40270da8703b 736 SUPERFAMILY SSF81296 23 121 1.01E-14 T 22-04-2016 IPR014756 Immunoglobulin E-set PP4_RS08665 c50ad1efca21302efdba40270da8703b 736 Pfam PF00128 Alpha amylase, catalytic domain 282 356 4.6E-8 T 22-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 PP4_RS08665 c50ad1efca21302efdba40270da8703b 736 PIRSF PIRSF000463 12 736 8.7E-288 T 22-04-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 PP4_RS08665 c50ad1efca21302efdba40270da8703b 736 Gene3D G3DSA:2.60.40.10 117 224 3.3E-36 T 22-04-2016 IPR013783 Immunoglobulin-like fold PP4_RS08665 c50ad1efca21302efdba40270da8703b 736 Gene3D G3DSA:2.60.40.10 19 110 3.4E-12 T 22-04-2016 IPR013783 Immunoglobulin-like fold PP4_RS08665 c50ad1efca21302efdba40270da8703b 736 Gene3D G3DSA:3.20.20.80 235 622 3.7E-92 T 22-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PP4_RS08665 c50ad1efca21302efdba40270da8703b 736 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 129 211 1.2E-21 T 22-04-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 PP4_RS08665 c50ad1efca21302efdba40270da8703b 736 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 105 736 45.056 T 22-04-2016 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00164 PP4_RS09660 7fedae420a24936eb4af0768a3cfebf6 301 TIGRFAM TIGR02297 HpaA: 4-hydroxyphenylacetate catabolism regulatory protein HpaA 7 296 5.9E-131 T 22-04-2016 IPR011983 4-hydroxyphenylacetate catabolism regulatory protein HpaA PP4_RS09660 7fedae420a24936eb4af0768a3cfebf6 301 PANTHER PTHR11019 36 301 2.0E-71 T 22-04-2016 PP4_RS09660 7fedae420a24936eb4af0768a3cfebf6 301 PANTHER PTHR11019:SF45 36 301 2.0E-71 T 22-04-2016 PP4_RS09660 7fedae420a24936eb4af0768a3cfebf6 301 SUPERFAMILY SSF51182 38 155 1.25E-11 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS09660 7fedae420a24936eb4af0768a3cfebf6 301 SUPERFAMILY SSF46689 249 296 3.4E-11 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS09660 7fedae420a24936eb4af0768a3cfebf6 301 Pfam PF02311 AraC-like ligand binding domain 31 168 1.9E-12 T 22-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PP4_RS09660 7fedae420a24936eb4af0768a3cfebf6 301 Gene3D G3DSA:2.60.120.280 43 182 5.1E-10 T 22-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PP4_RS09660 7fedae420a24936eb4af0768a3cfebf6 301 Pfam PF12833 Helix-turn-helix domain 217 296 2.3E-16 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS09660 7fedae420a24936eb4af0768a3cfebf6 301 Gene3D G3DSA:1.10.10.60 249 297 9.3E-15 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS09660 7fedae420a24936eb4af0768a3cfebf6 301 SMART SM00342 211 294 3.0E-17 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS12015 85651cf9becaadcb18b71c7c6eb90f5b 658 PANTHER PTHR13833:SF51 105 393 2.6E-43 T 22-04-2016 PP4_RS12015 85651cf9becaadcb18b71c7c6eb90f5b 658 PANTHER PTHR13833 105 393 2.6E-43 T 22-04-2016 PP4_RS12015 85651cf9becaadcb18b71c7c6eb90f5b 658 Pfam PF02239 Cytochrome D1 heme domain 235 340 6.1E-9 T 22-04-2016 PP4_RS12015 85651cf9becaadcb18b71c7c6eb90f5b 658 SUPERFAMILY SSF50974 142 462 1.65E-47 T 22-04-2016 IPR011045 Nitrous oxide reductase, N-terminal PP4_RS12015 85651cf9becaadcb18b71c7c6eb90f5b 658 Gene3D G3DSA:2.130.10.10 293 464 3.6E-20 T 22-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 PP4_RS12015 85651cf9becaadcb18b71c7c6eb90f5b 658 Gene3D G3DSA:2.130.10.10 142 292 1.5E-23 T 22-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 PP4_RS06750 c84311bf5837ce7d645472954a4a9d20 255 Pfam PF04079 Segregation and condensation complex subunit ScpB 12 171 5.5E-50 T 22-04-2016 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 PP4_RS06750 c84311bf5837ce7d645472954a4a9d20 255 SUPERFAMILY SSF46785 6 86 2.39E-14 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS06750 c84311bf5837ce7d645472954a4a9d20 255 PIRSF PIRSF019345 1 208 6.2E-77 T 22-04-2016 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 PP4_RS06750 c84311bf5837ce7d645472954a4a9d20 255 Gene3D G3DSA:1.10.10.10 5 85 4.1E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS06750 c84311bf5837ce7d645472954a4a9d20 255 SUPERFAMILY SSF46785 87 163 4.08E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS06750 c84311bf5837ce7d645472954a4a9d20 255 Gene3D G3DSA:1.10.10.10 87 163 5.1E-34 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS06750 c84311bf5837ce7d645472954a4a9d20 255 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 9 177 3.9E-33 T 22-04-2016 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 PP4_RS06750 c84311bf5837ce7d645472954a4a9d20 255 PANTHER PTHR34298 1 193 9.6E-79 T 22-04-2016 PP4_RS06750 c84311bf5837ce7d645472954a4a9d20 255 PANTHER PTHR34298:SF2 1 193 9.6E-79 T 22-04-2016 PP4_RS10015 93cb0531dfb4c3f247c6e4323c3fad53 258 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 252 4.8E-36 T 22-04-2016 PP4_RS10015 93cb0531dfb4c3f247c6e4323c3fad53 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 2.7E-18 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS10015 93cb0531dfb4c3f247c6e4323c3fad53 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 2.7E-18 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS10015 93cb0531dfb4c3f247c6e4323c3fad53 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 2.7E-18 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS10015 93cb0531dfb4c3f247c6e4323c3fad53 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 2.7E-18 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS10015 93cb0531dfb4c3f247c6e4323c3fad53 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 2.7E-18 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS10015 93cb0531dfb4c3f247c6e4323c3fad53 258 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 177 194 2.7E-18 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS10015 93cb0531dfb4c3f247c6e4323c3fad53 258 SUPERFAMILY SSF51735 7 253 1.25E-54 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS10015 93cb0531dfb4c3f247c6e4323c3fad53 258 PANTHER PTHR24319:SF23 1 252 7.7E-53 T 22-04-2016 PP4_RS10015 93cb0531dfb4c3f247c6e4323c3fad53 258 Gene3D G3DSA:3.40.50.720 5 253 2.5E-54 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS10015 93cb0531dfb4c3f247c6e4323c3fad53 258 PANTHER PTHR24319 1 252 7.7E-53 T 22-04-2016 PP4_RS14760 88d9f9571e0052fc9dad2d8eb1c092a7 270 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 6 262 1.6E-27 T 22-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase PP4_RS14760 88d9f9571e0052fc9dad2d8eb1c092a7 270 PANTHER PTHR22748:SF7 1 269 7.4E-130 T 22-04-2016 PP4_RS14760 88d9f9571e0052fc9dad2d8eb1c092a7 270 PANTHER PTHR22748 1 269 7.4E-130 T 22-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 PP4_RS14760 88d9f9571e0052fc9dad2d8eb1c092a7 270 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 1 269 9.1E-94 T 22-04-2016 PP4_RS14760 88d9f9571e0052fc9dad2d8eb1c092a7 270 SUPERFAMILY SSF56219 1 269 1.83E-82 T 22-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase PP4_RS14760 88d9f9571e0052fc9dad2d8eb1c092a7 270 Gene3D G3DSA:3.60.10.10 1 269 8.6E-79 T 22-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase PP4_RS14760 88d9f9571e0052fc9dad2d8eb1c092a7 270 ProSitePatterns PS00726 AP endonucleases family 1 signature 1. 27 36 - T 22-04-2016 IPR020847 AP endonuclease 1, binding site GO:0003677|GO:0004519|GO:0005622|GO:0006281 PP4_RS14760 88d9f9571e0052fc9dad2d8eb1c092a7 270 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 1 269 3.1E-82 T 22-04-2016 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 PP4_RS14760 88d9f9571e0052fc9dad2d8eb1c092a7 270 ProSitePatterns PS00727 AP endonucleases family 1 signature 2. 198 214 - T 22-04-2016 IPR020848 AP endonuclease 1, conserved site GO:0003677|GO:0004519|GO:0005622|GO:0006281 PP4_RS26995 7d9e891790ac667f263a11dd6292184d 257 Pfam PF07722 Peptidase C26 7 223 3.7E-72 T 22-04-2016 IPR011697 Peptidase C26 GO:0006541|GO:0016787 PP4_RS26995 7d9e891790ac667f263a11dd6292184d 257 PANTHER PTHR11922:SF18 15 69 2.7E-53 T 22-04-2016 PP4_RS26995 7d9e891790ac667f263a11dd6292184d 257 PANTHER PTHR11922:SF18 85 257 2.7E-53 T 22-04-2016 PP4_RS26995 7d9e891790ac667f263a11dd6292184d 257 SUPERFAMILY SSF52317 29 246 1.19E-39 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS26995 7d9e891790ac667f263a11dd6292184d 257 PANTHER PTHR11922 15 69 2.7E-53 T 22-04-2016 PP4_RS26995 7d9e891790ac667f263a11dd6292184d 257 PANTHER PTHR11922 85 257 2.7E-53 T 22-04-2016 PP4_RS26995 7d9e891790ac667f263a11dd6292184d 257 Gene3D G3DSA:3.40.50.880 6 247 8.5E-43 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS02650 a77231844f4da8dec8005004ba88c29e 944 Hamap MF_00205 UvrABC system protein A [uvrA]. 1 939 22.726 T 22-04-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 PP4_RS02650 a77231844f4da8dec8005004ba88c29e 944 ProSitePatterns PS00211 ABC transporters family signature. 829 843 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS02650 a77231844f4da8dec8005004ba88c29e 944 Gene3D G3DSA:3.40.50.300 477 595 7.0E-57 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS02650 a77231844f4da8dec8005004ba88c29e 944 Gene3D G3DSA:3.40.50.300 3 89 7.0E-57 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS02650 a77231844f4da8dec8005004ba88c29e 944 Gene3D G3DSA:3.40.50.300 820 940 2.5E-60 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS02650 a77231844f4da8dec8005004ba88c29e 944 Gene3D G3DSA:3.40.50.300 604 671 2.5E-60 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS02650 a77231844f4da8dec8005004ba88c29e 944 Gene3D G3DSA:1.20.1580.10 406 476 3.2E-53 T 22-04-2016 PP4_RS02650 a77231844f4da8dec8005004ba88c29e 944 Gene3D G3DSA:1.20.1580.10 91 129 3.2E-53 T 22-04-2016 PP4_RS02650 a77231844f4da8dec8005004ba88c29e 944 Gene3D G3DSA:1.20.1580.10 251 284 3.2E-53 T 22-04-2016 PP4_RS02650 a77231844f4da8dec8005004ba88c29e 944 Gene3D G3DSA:1.10.8.280 286 405 5.4E-40 T 22-04-2016 PP4_RS02650 a77231844f4da8dec8005004ba88c29e 944 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 3 923 0.0 T 22-04-2016 IPR004602 UvrABC system subunit A GO:0006289|GO:0009380|GO:0009381 PP4_RS02650 a77231844f4da8dec8005004ba88c29e 944 SUPERFAMILY SSF52540 7 204 4.23E-47 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS02650 a77231844f4da8dec8005004ba88c29e 944 SUPERFAMILY SSF52540 432 568 4.23E-47 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS02650 a77231844f4da8dec8005004ba88c29e 944 Gene3D G3DSA:3.30.1490.20 200 248 3.5E-28 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 PP4_RS02650 a77231844f4da8dec8005004ba88c29e 944 Gene3D G3DSA:3.30.1490.20 130 153 3.5E-28 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 PP4_RS02650 a77231844f4da8dec8005004ba88c29e 944 PANTHER PTHR32282:SF2 2 944 0.0 T 22-04-2016 PP4_RS02650 a77231844f4da8dec8005004ba88c29e 944 SUPERFAMILY SSF52540 614 909 1.08E-51 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS02650 a77231844f4da8dec8005004ba88c29e 944 PANTHER PTHR32282 2 944 0.0 T 22-04-2016 PP4_RS02650 a77231844f4da8dec8005004ba88c29e 944 Gene3D G3DSA:1.20.1580.10 693 819 3.8E-53 T 22-04-2016 PP4_RS02650 a77231844f4da8dec8005004ba88c29e 944 ProSitePatterns PS00211 ABC transporters family signature. 486 500 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS08475 144afae31ca5cac1533ec4a4d3b83859 519 Pfam PF03958 Bacterial type II/III secretion system short domain 145 269 1.9E-14 T 22-04-2016 IPR005644 NolW-like PP4_RS08475 144afae31ca5cac1533ec4a4d3b83859 519 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 431 464 - T 22-04-2016 IPR004845 Type II secretion system GspD, conserved site GO:0008565 PP4_RS08475 144afae31ca5cac1533ec4a4d3b83859 519 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 338 357 9.8E-38 T 22-04-2016 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 PP4_RS08475 144afae31ca5cac1533ec4a4d3b83859 519 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 272 292 9.8E-38 T 22-04-2016 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 PP4_RS08475 144afae31ca5cac1533ec4a4d3b83859 519 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 156 173 9.8E-38 T 22-04-2016 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 PP4_RS08475 144afae31ca5cac1533ec4a4d3b83859 519 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 464 483 9.8E-38 T 22-04-2016 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 PP4_RS08475 144afae31ca5cac1533ec4a4d3b83859 519 PRINTS PR01337 Type III secretion system outer membrane G protein family signature 372 387 9.8E-38 T 22-04-2016 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 PP4_RS08475 144afae31ca5cac1533ec4a4d3b83859 519 TIGRFAM TIGR02516 type_III_yscC: type III secretion outer membrane pore, YscC/HrcC family 230 486 1.1E-91 T 22-04-2016 IPR003522 Type III secretion system outer membrane pore YscC/HrcC GO:0009306 PP4_RS08475 144afae31ca5cac1533ec4a4d3b83859 519 PANTHER PTHR30332 1 486 1.4E-63 T 22-04-2016 PP4_RS08475 144afae31ca5cac1533ec4a4d3b83859 519 PANTHER PTHR30332:SF5 1 486 1.4E-63 T 22-04-2016 PP4_RS08475 144afae31ca5cac1533ec4a4d3b83859 519 Pfam PF00263 Bacterial type II and III secretion system protein 325 483 5.3E-34 T 22-04-2016 IPR004846 Type II/III secretion system GO:0009306 PP4_RS25790 bf926d338a1a9d3cd3f34a15e2ce0e23 161 PANTHER PTHR36918 1 161 1.4E-78 T 22-04-2016 PP4_RS25790 bf926d338a1a9d3cd3f34a15e2ce0e23 161 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 20 37 1.2E-37 T 22-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 PP4_RS25790 bf926d338a1a9d3cd3f34a15e2ce0e23 161 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 130 148 1.2E-37 T 22-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 PP4_RS25790 bf926d338a1a9d3cd3f34a15e2ce0e23 161 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 104 126 1.2E-37 T 22-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 PP4_RS25790 bf926d338a1a9d3cd3f34a15e2ce0e23 161 PRINTS PR01594 Bacterial protein-transport SecB chaperone protein signature 80 100 1.2E-37 T 22-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 PP4_RS25790 bf926d338a1a9d3cd3f34a15e2ce0e23 161 Hamap MF_00821 Protein-export protein SecB [secB]. 1 152 32.906 T 22-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 PP4_RS25790 bf926d338a1a9d3cd3f34a15e2ce0e23 161 SUPERFAMILY SSF54611 7 149 2.4E-52 T 22-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 PP4_RS25790 bf926d338a1a9d3cd3f34a15e2ce0e23 161 Pfam PF02556 Preprotein translocase subunit SecB 12 150 4.0E-54 T 22-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 PP4_RS25790 bf926d338a1a9d3cd3f34a15e2ce0e23 161 PANTHER PTHR36918:SF1 1 161 1.4E-78 T 22-04-2016 PP4_RS25790 bf926d338a1a9d3cd3f34a15e2ce0e23 161 Gene3D G3DSA:3.10.420.10 12 155 8.5E-57 T 22-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 PP4_RS25790 bf926d338a1a9d3cd3f34a15e2ce0e23 161 TIGRFAM TIGR00809 secB: protein-export chaperone SecB 13 147 6.1E-54 T 22-04-2016 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 PP4_RS22525 74566f158d888023e992ba16a37ddf13 478 Gene3D G3DSA:1.20.1600.10 68 458 2.7E-51 T 22-04-2016 PP4_RS22525 74566f158d888023e992ba16a37ddf13 478 Pfam PF02321 Outer membrane efflux protein 71 251 7.7E-25 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PP4_RS22525 74566f158d888023e992ba16a37ddf13 478 Pfam PF02321 Outer membrane efflux protein 277 446 1.4E-17 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PP4_RS22525 74566f158d888023e992ba16a37ddf13 478 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 68 467 6.7E-85 T 22-04-2016 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 PP4_RS22525 74566f158d888023e992ba16a37ddf13 478 SUPERFAMILY SSF56954 10 460 7.59E-65 T 22-04-2016 PP4_RS22525 74566f158d888023e992ba16a37ddf13 478 PANTHER PTHR30026 66 464 9.0E-67 T 22-04-2016 PP4_RS22525 74566f158d888023e992ba16a37ddf13 478 PANTHER PTHR30026:SF3 66 464 9.0E-67 T 22-04-2016 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 PP4_RS20725 a646fd2dcff77d66f8d2e11539570ad0 277 SUPERFAMILY SSF101386 148 246 7.48E-26 T 22-04-2016 PP4_RS20725 a646fd2dcff77d66f8d2e11539570ad0 277 PANTHER PTHR30522 1 273 2.7E-123 T 22-04-2016 PP4_RS20725 a646fd2dcff77d66f8d2e11539570ad0 277 PANTHER PTHR30522:SF0 1 273 2.7E-123 T 22-04-2016 IPR011551 NTP pyrophosphohydrolase MazG PP4_RS20725 a646fd2dcff77d66f8d2e11539570ad0 277 Gene3D G3DSA:1.10.287.1080 20 72 1.5E-6 T 22-04-2016 PP4_RS20725 a646fd2dcff77d66f8d2e11539570ad0 277 Gene3D G3DSA:1.10.287.1080 144 230 6.9E-13 T 22-04-2016 PP4_RS20725 a646fd2dcff77d66f8d2e11539570ad0 277 SUPERFAMILY SSF101386 2 103 4.36E-23 T 22-04-2016 PP4_RS20725 a646fd2dcff77d66f8d2e11539570ad0 277 TIGRFAM TIGR00444 mazG: MazG family protein 11 267 7.4E-99 T 22-04-2016 IPR011551 NTP pyrophosphohydrolase MazG PP4_RS20725 a646fd2dcff77d66f8d2e11539570ad0 277 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 28 101 1.2E-24 T 22-04-2016 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core PP4_RS20725 a646fd2dcff77d66f8d2e11539570ad0 277 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 179 236 7.3E-10 T 22-04-2016 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core PP4_RS16995 aaeb3fbecd3cc232af31eab8ec499091 181 Gene3D G3DSA:3.90.1140.10 14 180 1.9E-38 T 22-04-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase PP4_RS16995 aaeb3fbecd3cc232af31eab8ec499091 181 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 14 169 1.1E-26 T 22-04-2016 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 PP4_RS16995 aaeb3fbecd3cc232af31eab8ec499091 181 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 13 179 17.109 T 22-04-2016 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 PP4_RS16995 aaeb3fbecd3cc232af31eab8ec499091 181 PANTHER PTHR35561:SF1 14 181 1.5E-28 T 22-04-2016 PP4_RS16995 aaeb3fbecd3cc232af31eab8ec499091 181 PANTHER PTHR35561 14 181 1.5E-28 T 22-04-2016 PP4_RS16995 aaeb3fbecd3cc232af31eab8ec499091 181 Pfam PF02834 LigT like Phosphoesterase 100 168 2.6E-6 T 22-04-2016 IPR014051 Phosphoesterase, HXTX PP4_RS16995 aaeb3fbecd3cc232af31eab8ec499091 181 Pfam PF02834 LigT like Phosphoesterase 20 94 1.4E-12 T 22-04-2016 IPR014051 Phosphoesterase, HXTX PP4_RS16995 aaeb3fbecd3cc232af31eab8ec499091 181 SUPERFAMILY SSF55144 13 179 2.27E-38 T 22-04-2016 IPR009097 RNA ligase/cyclic nucleotide phosphodiesterase PP4_RS22075 ebf2c083ac313ac0ee0514556efab2fe 418 Gene3D G3DSA:3.30.565.10 275 414 3.6E-27 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS22075 ebf2c083ac313ac0ee0514556efab2fe 418 SUPERFAMILY SSF47384 203 263 2.55E-6 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS22075 ebf2c083ac313ac0ee0514556efab2fe 418 PANTHER PTHR24423 1 9 2.9E-34 T 22-04-2016 PP4_RS22075 ebf2c083ac313ac0ee0514556efab2fe 418 PANTHER PTHR24423 179 412 2.9E-34 T 22-04-2016 PP4_RS22075 ebf2c083ac313ac0ee0514556efab2fe 418 PRINTS PR00344 Bacterial sensor protein C-terminal signature 363 373 1.5E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS22075 ebf2c083ac313ac0ee0514556efab2fe 418 PRINTS PR00344 Bacterial sensor protein C-terminal signature 374 392 1.5E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS22075 ebf2c083ac313ac0ee0514556efab2fe 418 PRINTS PR00344 Bacterial sensor protein C-terminal signature 398 411 1.5E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS22075 ebf2c083ac313ac0ee0514556efab2fe 418 PRINTS PR00344 Bacterial sensor protein C-terminal signature 345 359 1.5E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS22075 ebf2c083ac313ac0ee0514556efab2fe 418 SMART SM00388 203 268 8.9E-4 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS22075 ebf2c083ac313ac0ee0514556efab2fe 418 SUPERFAMILY SSF55874 257 412 3.14E-30 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS22075 ebf2c083ac313ac0ee0514556efab2fe 418 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 313 412 1.0E-17 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS22075 ebf2c083ac313ac0ee0514556efab2fe 418 SMART SM00387 310 414 1.1E-21 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS10695 d75e49080175e4fb250a2f26b421caec 296 SUPERFAMILY SSF46894 226 287 9.52E-17 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS10695 d75e49080175e4fb250a2f26b421caec 296 SMART SM00421 228 285 1.8E-15 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS10695 d75e49080175e4fb250a2f26b421caec 296 PANTHER PTHR26402 231 289 5.2E-16 T 22-04-2016 PP4_RS10695 d75e49080175e4fb250a2f26b421caec 296 Pfam PF00196 Bacterial regulatory proteins, luxR family 229 282 3.5E-15 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS10695 d75e49080175e4fb250a2f26b421caec 296 Gene3D G3DSA:1.10.10.10 230 286 1.1E-17 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS10695 d75e49080175e4fb250a2f26b421caec 296 PANTHER PTHR26402:SF572 231 289 5.2E-16 T 22-04-2016 PP4_RS10695 d75e49080175e4fb250a2f26b421caec 296 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 261 273 7.8E-10 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS10695 d75e49080175e4fb250a2f26b421caec 296 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 245 261 7.8E-10 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS10695 d75e49080175e4fb250a2f26b421caec 296 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 231 245 7.8E-10 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS12115 c3fdd3db79eab1e9752b00ec53cbf18a 577 PANTHER PTHR24221 12 556 7.8E-162 T 22-04-2016 PP4_RS12115 c3fdd3db79eab1e9752b00ec53cbf18a 577 Gene3D G3DSA:3.40.50.300 352 572 3.9E-65 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS12115 c3fdd3db79eab1e9752b00ec53cbf18a 577 SMART SM00382 378 562 5.3E-13 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS12115 c3fdd3db79eab1e9752b00ec53cbf18a 577 Pfam PF00005 ABC transporter 369 518 1.8E-31 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS12115 c3fdd3db79eab1e9752b00ec53cbf18a 577 SUPERFAMILY SSF90123 23 330 2.62E-68 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PP4_RS12115 c3fdd3db79eab1e9752b00ec53cbf18a 577 ProSitePatterns PS00211 ABC transporters family signature. 490 504 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS12115 c3fdd3db79eab1e9752b00ec53cbf18a 577 SUPERFAMILY SSF52540 342 565 5.63E-70 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS12115 c3fdd3db79eab1e9752b00ec53cbf18a 577 Pfam PF00664 ABC transporter transmembrane region 38 306 5.8E-40 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PP4_RS12115 c3fdd3db79eab1e9752b00ec53cbf18a 577 Gene3D G3DSA:1.20.1560.10 23 329 2.7E-68 T 22-04-2016 PP4_RS04010 76ab1283edd32aeb6ad1d2a335768e43 353 PANTHER PTHR30386 5 340 5.5E-108 T 22-04-2016 PP4_RS04010 76ab1283edd32aeb6ad1d2a335768e43 353 SUPERFAMILY SSF111369 184 285 5.75E-14 T 22-04-2016 PP4_RS04010 76ab1283edd32aeb6ad1d2a335768e43 353 SUPERFAMILY SSF111369 47 114 8.89E-12 T 22-04-2016 PP4_RS04010 76ab1283edd32aeb6ad1d2a335768e43 353 Gene3D G3DSA:2.40.50.100 48 78 1.5E-21 T 22-04-2016 PP4_RS04010 76ab1283edd32aeb6ad1d2a335768e43 353 Gene3D G3DSA:2.40.50.100 209 242 1.5E-21 T 22-04-2016 PP4_RS04010 76ab1283edd32aeb6ad1d2a335768e43 353 PANTHER PTHR30386:SF7 5 340 5.5E-108 T 22-04-2016 PP4_RS04010 76ab1283edd32aeb6ad1d2a335768e43 353 Pfam PF13533 Biotin-lipoyl like 48 92 7.5E-16 T 22-04-2016 PP4_RS04010 76ab1283edd32aeb6ad1d2a335768e43 353 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 164 288 4.0E-17 T 22-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PP4_RS11325 a1edcfb405c6f66460d4800db2c0e6d6 414 Pfam PF01266 FAD dependent oxidoreductase 5 395 7.6E-53 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PP4_RS11325 a1edcfb405c6f66460d4800db2c0e6d6 414 Gene3D G3DSA:3.50.50.60 186 266 4.2E-56 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS11325 a1edcfb405c6f66460d4800db2c0e6d6 414 Gene3D G3DSA:3.50.50.60 356 413 4.2E-56 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS11325 a1edcfb405c6f66460d4800db2c0e6d6 414 Gene3D G3DSA:3.50.50.60 2 59 4.2E-56 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS11325 a1edcfb405c6f66460d4800db2c0e6d6 414 Gene3D G3DSA:3.50.50.60 109 131 4.2E-56 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS11325 a1edcfb405c6f66460d4800db2c0e6d6 414 PANTHER PTHR13847:SF216 6 61 2.9E-89 T 22-04-2016 PP4_RS11325 a1edcfb405c6f66460d4800db2c0e6d6 414 PANTHER PTHR13847:SF216 108 414 2.9E-89 T 22-04-2016 PP4_RS11325 a1edcfb405c6f66460d4800db2c0e6d6 414 PANTHER PTHR13847 6 61 2.9E-89 T 22-04-2016 PP4_RS11325 a1edcfb405c6f66460d4800db2c0e6d6 414 PANTHER PTHR13847 108 414 2.9E-89 T 22-04-2016 PP4_RS11325 a1edcfb405c6f66460d4800db2c0e6d6 414 SUPERFAMILY SSF54373 270 356 3.26E-5 T 22-04-2016 PP4_RS11325 a1edcfb405c6f66460d4800db2c0e6d6 414 SUPERFAMILY SSF51905 108 267 2.2E-47 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS11325 a1edcfb405c6f66460d4800db2c0e6d6 414 SUPERFAMILY SSF51905 4 57 2.2E-47 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS11325 a1edcfb405c6f66460d4800db2c0e6d6 414 SUPERFAMILY SSF51905 356 413 2.2E-47 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS07870 7a4840679a52ae1b920e7813f2105f5b 373 Pfam PF02036 SCP-2 sterol transfer family 43 95 2.0E-7 T 22-04-2016 IPR003033 SCP2 sterol-binding domain PP4_RS07870 7a4840679a52ae1b920e7813f2105f5b 373 PANTHER PTHR12461 148 366 1.6E-42 T 22-04-2016 PP4_RS07870 7a4840679a52ae1b920e7813f2105f5b 373 SUPERFAMILY SSF51197 129 368 1.79E-46 T 22-04-2016 PP4_RS07870 7a4840679a52ae1b920e7813f2105f5b 373 Gene3D G3DSA:3.30.1050.10 14 100 1.0E-14 T 22-04-2016 IPR003033 SCP2 sterol-binding domain PP4_RS07870 7a4840679a52ae1b920e7813f2105f5b 373 Pfam PF13621 Cupin-like domain 147 366 6.7E-37 T 22-04-2016 PP4_RS07870 7a4840679a52ae1b920e7813f2105f5b 373 SMART SM00558 206 371 1.7E-5 T 22-04-2016 IPR003347 JmjC domain PP4_RS07870 7a4840679a52ae1b920e7813f2105f5b 373 SUPERFAMILY SSF55718 15 98 8.24E-13 T 22-04-2016 IPR003033 SCP2 sterol-binding domain PP4_RS07870 7a4840679a52ae1b920e7813f2105f5b 373 Gene3D G3DSA:2.60.120.650 141 368 5.3E-41 T 22-04-2016 PP4_RS05900 c875d7bfbacd8752fd8234e2d65b263a 348 SUPERFAMILY SSF52540 23 254 1.33E-52 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS05900 c875d7bfbacd8752fd8234e2d65b263a 348 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 348 181.758 T 22-04-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 PP4_RS05900 c875d7bfbacd8752fd8234e2d65b263a 348 PANTHER PTHR13779 2 336 5.0E-187 T 22-04-2016 PP4_RS05900 c875d7bfbacd8752fd8234e2d65b263a 348 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 27 329 4.9E-149 T 22-04-2016 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 PP4_RS05900 c875d7bfbacd8752fd8234e2d65b263a 348 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 256 329 2.6E-33 T 22-04-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 PP4_RS05900 c875d7bfbacd8752fd8234e2d65b263a 348 SUPERFAMILY SSF46785 260 333 4.08E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS05900 c875d7bfbacd8752fd8234e2d65b263a 348 SMART SM00382 54 181 2.4E-12 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS05900 c875d7bfbacd8752fd8234e2d65b263a 348 Gene3D G3DSA:3.40.50.300 23 178 1.3E-29 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS05900 c875d7bfbacd8752fd8234e2d65b263a 348 Gene3D G3DSA:1.10.10.10 260 331 9.0E-35 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS05900 c875d7bfbacd8752fd8234e2d65b263a 348 PANTHER PTHR13779:SF25 2 336 5.0E-187 T 22-04-2016 PP4_RS05900 c875d7bfbacd8752fd8234e2d65b263a 348 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 253 336 3.0E-40 T 22-04-2016 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 PP4_RS05900 c875d7bfbacd8752fd8234e2d65b263a 348 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 8 238 7.8E-116 T 22-04-2016 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 PP4_RS05900 c875d7bfbacd8752fd8234e2d65b263a 348 Gene3D G3DSA:1.10.8.60 186 258 8.8E-34 T 22-04-2016 PP4_RS07165 d65be1409f57b5d5bd032679cc41f387 468 Pfam PF00535 Glycosyl transferase family 2 10 128 1.9E-20 T 22-04-2016 IPR001173 Glycosyltransferase 2-like PP4_RS07165 d65be1409f57b5d5bd032679cc41f387 468 SUPERFAMILY SSF53448 6 233 7.78E-34 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS07165 d65be1409f57b5d5bd032679cc41f387 468 Gene3D G3DSA:3.90.550.10 6 233 5.9E-35 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS07165 d65be1409f57b5d5bd032679cc41f387 468 Gene3D G3DSA:3.40.50.720 371 453 3.9E-9 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS07165 d65be1409f57b5d5bd032679cc41f387 468 PANTHER PTHR22916 1 146 3.2E-26 T 22-04-2016 PP4_RS07165 d65be1409f57b5d5bd032679cc41f387 468 PANTHER PTHR22916 174 233 3.2E-26 T 22-04-2016 PP4_RS19555 4a1699ec0a970b5121d463a81270b9f2 339 PANTHER PTHR21071 4 338 1.0E-152 T 22-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PP4_RS19555 4a1699ec0a970b5121d463a81270b9f2 339 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 339 88.167 T 22-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PP4_RS19555 4a1699ec0a970b5121d463a81270b9f2 339 SUPERFAMILY SSF56176 10 197 2.29E-44 T 22-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 PP4_RS19555 4a1699ec0a970b5121d463a81270b9f2 339 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 11 335 3.7E-70 T 22-04-2016 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PP4_RS19555 4a1699ec0a970b5121d463a81270b9f2 339 Gene3D G3DSA:3.90.78.10 240 338 4.4E-41 T 22-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PP4_RS19555 4a1699ec0a970b5121d463a81270b9f2 339 Gene3D G3DSA:3.30.43.10 9 72 4.5E-25 T 22-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 PP4_RS19555 4a1699ec0a970b5121d463a81270b9f2 339 SUPERFAMILY SSF56194 212 338 8.24E-47 T 22-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PP4_RS19555 4a1699ec0a970b5121d463a81270b9f2 339 PANTHER PTHR21071:SF6 4 338 1.0E-152 T 22-04-2016 PP4_RS19555 4a1699ec0a970b5121d463a81270b9f2 339 Gene3D G3DSA:3.30.465.10 81 239 8.0E-52 T 22-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 PP4_RS19555 4a1699ec0a970b5121d463a81270b9f2 339 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 216 338 1.9E-33 T 22-04-2016 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PP4_RS19555 4a1699ec0a970b5121d463a81270b9f2 339 Pfam PF01565 FAD binding domain 25 156 1.1E-26 T 22-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 PP4_RS16485 bdd4f8549bb855a895a8452c97af88ef 132 Gene3D G3DSA:3.10.180.10 10 111 2.5E-10 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PP4_RS16485 bdd4f8549bb855a895a8452c97af88ef 132 SUPERFAMILY SSF54593 8 115 2.11E-14 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PP4_RS14325 6d93e4d23d5ee2a8613271ce7f5a16a8 1059 SUPERFAMILY SSF82714 733 818 1.09E-18 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS14325 6d93e4d23d5ee2a8613271ce7f5a16a8 1059 SUPERFAMILY SSF82693 819 868 1.62E-26 T 22-04-2016 PP4_RS14325 6d93e4d23d5ee2a8613271ce7f5a16a8 1059 SUPERFAMILY SSF82693 683 732 1.62E-26 T 22-04-2016 PP4_RS14325 6d93e4d23d5ee2a8613271ce7f5a16a8 1059 TIGRFAM TIGR00915 2A0602: RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family 3 1053 0.0 T 22-04-2016 IPR004764 Hydrophobe/amphiphile efflux-1 HAE1 GO:0005215|GO:0006810|GO:0016021 PP4_RS14325 6d93e4d23d5ee2a8613271ce7f5a16a8 1059 Pfam PF00873 AcrB/AcrD/AcrF family 3 1038 0.0 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS14325 6d93e4d23d5ee2a8613271ce7f5a16a8 1059 Gene3D G3DSA:3.30.70.1430 580 682 1.3E-30 T 22-04-2016 PP4_RS14325 6d93e4d23d5ee2a8613271ce7f5a16a8 1059 SUPERFAMILY SSF82714 185 274 1.96E-20 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS14325 6d93e4d23d5ee2a8613271ce7f5a16a8 1059 PANTHER PTHR32063 1 1053 0.0 T 22-04-2016 PP4_RS14325 6d93e4d23d5ee2a8613271ce7f5a16a8 1059 PRINTS PR00702 Acriflavin resistance protein family signature 394 418 1.1E-93 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS14325 6d93e4d23d5ee2a8613271ce7f5a16a8 1059 PRINTS PR00702 Acriflavin resistance protein family signature 472 495 1.1E-93 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS14325 6d93e4d23d5ee2a8613271ce7f5a16a8 1059 PRINTS PR00702 Acriflavin resistance protein family signature 366 387 1.1E-93 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS14325 6d93e4d23d5ee2a8613271ce7f5a16a8 1059 PRINTS PR00702 Acriflavin resistance protein family signature 339 362 1.1E-93 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS14325 6d93e4d23d5ee2a8613271ce7f5a16a8 1059 PRINTS PR00702 Acriflavin resistance protein family signature 563 580 1.1E-93 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS14325 6d93e4d23d5ee2a8613271ce7f5a16a8 1059 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 1.1E-93 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS14325 6d93e4d23d5ee2a8613271ce7f5a16a8 1059 PRINTS PR00702 Acriflavin resistance protein family signature 447 470 1.1E-93 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS14325 6d93e4d23d5ee2a8613271ce7f5a16a8 1059 PRINTS PR00702 Acriflavin resistance protein family signature 632 646 1.1E-93 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS14325 6d93e4d23d5ee2a8613271ce7f5a16a8 1059 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 1.1E-93 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS14325 6d93e4d23d5ee2a8613271ce7f5a16a8 1059 Gene3D G3DSA:1.10.3850.10 285 500 7.1E-62 T 22-04-2016 PP4_RS14325 6d93e4d23d5ee2a8613271ce7f5a16a8 1059 Gene3D G3DSA:1.10.3850.10 825 1039 2.4E-58 T 22-04-2016 PP4_RS14325 6d93e4d23d5ee2a8613271ce7f5a16a8 1059 SUPERFAMILY SSF82693 41 134 4.45E-25 T 22-04-2016 PP4_RS14325 6d93e4d23d5ee2a8613271ce7f5a16a8 1059 Gene3D G3DSA:3.30.70.1430 41 141 8.3E-31 T 22-04-2016 PP4_RS14325 6d93e4d23d5ee2a8613271ce7f5a16a8 1059 SUPERFAMILY SSF82693 576 682 1.2E-27 T 22-04-2016 PP4_RS14325 6d93e4d23d5ee2a8613271ce7f5a16a8 1059 SUPERFAMILY SSF82866 299 499 2.49E-51 T 22-04-2016 PP4_RS14325 6d93e4d23d5ee2a8613271ce7f5a16a8 1059 SUPERFAMILY SSF82866 842 1038 6.02E-46 T 22-04-2016 PP4_RS14325 6d93e4d23d5ee2a8613271ce7f5a16a8 1059 SUPERFAMILY SSF82693 138 184 6.54E-29 T 22-04-2016 PP4_RS14325 6d93e4d23d5ee2a8613271ce7f5a16a8 1059 SUPERFAMILY SSF82693 277 333 6.54E-29 T 22-04-2016 PP4_RS14325 6d93e4d23d5ee2a8613271ce7f5a16a8 1059 PANTHER PTHR32063:SF11 1 1053 0.0 T 22-04-2016 PP4_RS14325 6d93e4d23d5ee2a8613271ce7f5a16a8 1059 Gene3D G3DSA:3.30.2090.10 184 277 1.4E-26 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS14325 6d93e4d23d5ee2a8613271ce7f5a16a8 1059 Gene3D G3DSA:3.30.2090.10 733 821 3.9E-22 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS10995 18c74b5218e08e3728f4c5bcc360c6e3 224 Gene3D G3DSA:2.160.20.60 23 194 2.0E-33 T 22-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 PP4_RS10995 18c74b5218e08e3728f4c5bcc360c6e3 224 PIRSF PIRSF006519 1 224 1.6E-79 T 22-04-2016 IPR012061 Glutamate synthase, large subunit domain 3 stand-alone protein PP4_RS10995 18c74b5218e08e3728f4c5bcc360c6e3 224 Pfam PF01493 GXGXG motif 34 187 3.5E-11 T 22-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 PP4_RS10995 18c74b5218e08e3728f4c5bcc360c6e3 224 SUPERFAMILY SSF69336 4 194 2.75E-41 T 22-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 PP4_RS25840 f0b452efac7ceeb58571e1cb4770923d 565 PANTHER PTHR11552 1 555 3.9E-255 T 22-04-2016 PP4_RS25840 f0b452efac7ceeb58571e1cb4770923d 565 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 261 275 - T 22-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 PP4_RS25840 f0b452efac7ceeb58571e1cb4770923d 565 TIGRFAM TIGR01810 betA: choline dehydrogenase 6 539 5.4E-281 T 22-04-2016 IPR011533 Oxygen-dependent choline dehydrogenase GO:0008812|GO:0019285 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|UniPathway: UPA00529 PP4_RS25840 f0b452efac7ceeb58571e1cb4770923d 565 PIRSF PIRSF000137 1 538 3.3E-139 T 22-04-2016 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|UniPathway: UPA00529 PP4_RS25840 f0b452efac7ceeb58571e1cb4770923d 565 Hamap MF_00750 Oxygen-dependent choline dehydrogenase [betA]. 3 556 62.966 T 22-04-2016 IPR011533 Oxygen-dependent choline dehydrogenase GO:0008812|GO:0019285 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|UniPathway: UPA00529 PP4_RS25840 f0b452efac7ceeb58571e1cb4770923d 565 Pfam PF05199 GMC oxidoreductase 395 529 4.0E-40 T 22-04-2016 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 PP4_RS25840 f0b452efac7ceeb58571e1cb4770923d 565 PANTHER PTHR11552:SF135 1 555 3.9E-255 T 22-04-2016 PP4_RS25840 f0b452efac7ceeb58571e1cb4770923d 565 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 84 107 - T 22-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 PP4_RS25840 f0b452efac7ceeb58571e1cb4770923d 565 Pfam PF00732 GMC oxidoreductase 5 302 2.1E-96 T 22-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 PP4_RS25840 f0b452efac7ceeb58571e1cb4770923d 565 SUPERFAMILY SSF54373 297 479 4.51E-62 T 22-04-2016 PP4_RS25840 f0b452efac7ceeb58571e1cb4770923d 565 SUPERFAMILY SSF51905 1 295 6.15E-91 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS25840 f0b452efac7ceeb58571e1cb4770923d 565 SUPERFAMILY SSF51905 478 537 6.15E-91 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS25840 f0b452efac7ceeb58571e1cb4770923d 565 Gene3D G3DSA:3.50.50.60 2 129 6.1E-122 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS25840 f0b452efac7ceeb58571e1cb4770923d 565 Gene3D G3DSA:3.50.50.60 472 536 6.1E-122 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS25840 f0b452efac7ceeb58571e1cb4770923d 565 Gene3D G3DSA:3.50.50.60 192 320 6.1E-122 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS13425 8e0d03722c64f2f12cbb0328c2349c2d 198 Gene3D G3DSA:3.40.50.970 16 176 1.1E-20 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS13425 8e0d03722c64f2f12cbb0328c2349c2d 198 PANTHER PTHR18968 13 172 1.0E-17 T 22-04-2016 PP4_RS13425 8e0d03722c64f2f12cbb0328c2349c2d 198 SUPERFAMILY SSF52518 18 179 3.69E-26 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS13425 8e0d03722c64f2f12cbb0328c2349c2d 198 PANTHER PTHR18968:SF81 13 172 1.0E-17 T 22-04-2016 PP4_RS13425 8e0d03722c64f2f12cbb0328c2349c2d 198 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 48 122 3.6E-15 T 22-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 PP4_RS12610 87ed1c31ec880f82e51ecdc0c924715d 1026 Hamap MF_01902 Error-prone DNA polymerase [dnaE2]. 6 1026 13.747 T 22-04-2016 IPR023073 DNA polymerase, error-prone GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS12610 87ed1c31ec880f82e51ecdc0c924715d 1026 SUPERFAMILY SSF89550 6 83 4.32E-10 T 22-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 PP4_RS12610 87ed1c31ec880f82e51ecdc0c924715d 1026 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 7 971 7.2E-178 T 22-04-2016 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS12610 87ed1c31ec880f82e51ecdc0c924715d 1026 Gene3D G3DSA:2.40.50.140 925 998 9.1E-4 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS12610 87ed1c31ec880f82e51ecdc0c924715d 1026 Pfam PF01336 OB-fold nucleic acid binding domain 938 1010 1.7E-8 T 22-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 PP4_RS12610 87ed1c31ec880f82e51ecdc0c924715d 1026 SMART SM00481 7 74 4.5E-9 T 22-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 PP4_RS12610 87ed1c31ec880f82e51ecdc0c924715d 1026 Pfam PF02811 PHP domain 8 124 7.6E-20 T 22-04-2016 IPR004013 PHP domain GO:0003824 PP4_RS12610 87ed1c31ec880f82e51ecdc0c924715d 1026 Pfam PF14579 Helix-hairpin-helix motif 767 857 1.2E-21 T 22-04-2016 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS12610 87ed1c31ec880f82e51ecdc0c924715d 1026 Gene3D G3DSA:3.20.20.140 7 232 7.0E-11 T 22-04-2016 PP4_RS12610 87ed1c31ec880f82e51ecdc0c924715d 1026 PANTHER PTHR32294 2 1016 0.0 T 22-04-2016 PP4_RS12610 87ed1c31ec880f82e51ecdc0c924715d 1026 PANTHER PTHR32294:SF4 2 1016 0.0 T 22-04-2016 PP4_RS12610 87ed1c31ec880f82e51ecdc0c924715d 1026 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 271 694 6.8E-152 T 22-04-2016 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS24020 cb0d54e3eae4332cf3f2e5e8d53836e9 342 SUPERFAMILY SSF53474 241 342 3.89E-45 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS24020 cb0d54e3eae4332cf3f2e5e8d53836e9 342 SUPERFAMILY SSF53474 29 175 3.89E-45 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS24020 cb0d54e3eae4332cf3f2e5e8d53836e9 342 Gene3D G3DSA:3.40.50.1820 39 342 1.2E-70 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS24020 cb0d54e3eae4332cf3f2e5e8d53836e9 342 PANTHER PTHR17630:SF49 22 342 1.3E-87 T 22-04-2016 PP4_RS24020 cb0d54e3eae4332cf3f2e5e8d53836e9 342 PANTHER PTHR17630 22 342 1.3E-87 T 22-04-2016 PP4_RS24020 cb0d54e3eae4332cf3f2e5e8d53836e9 342 Pfam PF01738 Dienelactone hydrolase family 56 211 1.5E-9 T 22-04-2016 IPR002925 Dienelactone hydrolase GO:0016787 PP4_RS08195 adb227e15fdaee510dcee8357482edda 536 Pfam PF00005 ABC transporter 27 185 2.6E-28 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS08195 adb227e15fdaee510dcee8357482edda 536 Pfam PF00005 ABC transporter 303 453 5.9E-30 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS08195 adb227e15fdaee510dcee8357482edda 536 SMART SM00382 35 235 2.6E-15 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS08195 adb227e15fdaee510dcee8357482edda 536 SMART SM00382 311 502 1.5E-15 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS08195 adb227e15fdaee510dcee8357482edda 536 Gene3D G3DSA:3.40.50.300 5 259 3.3E-73 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS08195 adb227e15fdaee510dcee8357482edda 536 Gene3D G3DSA:3.40.50.300 274 527 1.1E-77 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS08195 adb227e15fdaee510dcee8357482edda 536 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 504 528 1.8E-5 T 22-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 PP4_RS08195 adb227e15fdaee510dcee8357482edda 536 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 237 263 1.7E-4 T 22-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 PP4_RS08195 adb227e15fdaee510dcee8357482edda 536 PANTHER PTHR24220 8 410 7.8E-195 T 22-04-2016 PP4_RS08195 adb227e15fdaee510dcee8357482edda 536 SUPERFAMILY SSF52540 6 256 1.78E-67 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS08195 adb227e15fdaee510dcee8357482edda 536 ProSitePatterns PS00211 ABC transporters family signature. 425 439 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS08195 adb227e15fdaee510dcee8357482edda 536 ProSitePatterns PS00211 ABC transporters family signature. 158 172 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS08195 adb227e15fdaee510dcee8357482edda 536 SUPERFAMILY SSF52540 275 524 2.15E-68 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS08195 adb227e15fdaee510dcee8357482edda 536 PANTHER PTHR24220:SF574 8 410 7.8E-195 T 22-04-2016 PP4_RS11085 b116b71a99f6d8b93a719c929c514cdb 399 PANTHER PTHR22912:SF180 4 292 5.2E-16 T 22-04-2016 PP4_RS11085 b116b71a99f6d8b93a719c929c514cdb 399 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 314 7.5E-43 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS11085 b116b71a99f6d8b93a719c929c514cdb 399 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 6.0E-13 T 22-04-2016 PP4_RS11085 b116b71a99f6d8b93a719c929c514cdb 399 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 155 173 6.0E-13 T 22-04-2016 PP4_RS11085 b116b71a99f6d8b93a719c929c514cdb 399 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 6.0E-13 T 22-04-2016 PP4_RS11085 b116b71a99f6d8b93a719c929c514cdb 399 Gene3D G3DSA:3.50.50.60 110 322 1.1E-25 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS11085 b116b71a99f6d8b93a719c929c514cdb 399 PANTHER PTHR22912 4 292 5.2E-16 T 22-04-2016 PP4_RS11085 b116b71a99f6d8b93a719c929c514cdb 399 Gene3D G3DSA:3.50.50.60 1 109 8.4E-15 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS11085 b116b71a99f6d8b93a719c929c514cdb 399 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 1.9E-6 T 22-04-2016 PP4_RS11085 b116b71a99f6d8b93a719c929c514cdb 399 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 155 180 1.9E-6 T 22-04-2016 PP4_RS11085 b116b71a99f6d8b93a719c929c514cdb 399 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 285 292 1.9E-6 T 22-04-2016 PP4_RS11085 b116b71a99f6d8b93a719c929c514cdb 399 SUPERFAMILY SSF51905 209 332 2.3E-23 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS11085 b116b71a99f6d8b93a719c929c514cdb 399 SUPERFAMILY SSF51905 1 172 2.3E-23 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS03800 d146d67b096cad037fbdb948928b4f09 268 Pfam PF13369 Transglutaminase-like superfamily 37 183 9.2E-36 T 22-04-2016 IPR032698 Protein SirB1, N-terminal PP4_RS03800 d146d67b096cad037fbdb948928b4f09 268 PANTHER PTHR31350:SF1 72 257 2.4E-28 T 22-04-2016 PP4_RS03800 d146d67b096cad037fbdb948928b4f09 268 Pfam PF13371 Tetratricopeptide repeat 186 257 2.1E-14 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS03800 d146d67b096cad037fbdb948928b4f09 268 PANTHER PTHR31350 72 257 2.4E-28 T 22-04-2016 PP4_RS14610 c721aff1d28efea048d6f4f69fdba632 323 Pfam PF02626 Allophanate hydrolase subunit 2 24 296 5.9E-87 T 22-04-2016 IPR003778 Carboxyltransferase domain, subdomain A and B PP4_RS14610 c721aff1d28efea048d6f4f69fdba632 323 Gene3D G3DSA:2.40.100.10 192 311 7.8E-8 T 22-04-2016 IPR029000 Cyclophilin-like domain PP4_RS14610 c721aff1d28efea048d6f4f69fdba632 323 SMART SM00797 23 314 3.3E-145 T 22-04-2016 IPR003778 Carboxyltransferase domain, subdomain A and B PP4_RS14610 c721aff1d28efea048d6f4f69fdba632 323 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 1 320 2.1E-84 T 22-04-2016 IPR003778 Carboxyltransferase domain, subdomain A and B PP4_RS14610 c721aff1d28efea048d6f4f69fdba632 323 SUPERFAMILY SSF50891 178 304 7.96E-10 T 22-04-2016 IPR029000 Cyclophilin-like domain PP4_RS14360 e331c1a1cd06ce4197b546971ba5cd5a 358 TIGRFAM TIGR01263 4HPPD: 4-hydroxyphenylpyruvate dioxygenase 12 355 3.8E-120 T 22-04-2016 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 PP4_RS14360 e331c1a1cd06ce4197b546971ba5cd5a 358 PANTHER PTHR11959 6 356 1.6E-110 T 22-04-2016 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 PP4_RS14360 e331c1a1cd06ce4197b546971ba5cd5a 358 SUPERFAMILY SSF54593 5 342 1.54E-83 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PP4_RS14360 e331c1a1cd06ce4197b546971ba5cd5a 358 Gene3D G3DSA:3.10.180.10 5 147 2.8E-44 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PP4_RS14360 e331c1a1cd06ce4197b546971ba5cd5a 358 PIRSF PIRSF009283 1 356 4.3E-112 T 22-04-2016 IPR005956 4-hydroxyphenylpyruvate dioxygenase GO:0003868|GO:0009072|GO:0016701|GO:0055114 PP4_RS14360 e331c1a1cd06ce4197b546971ba5cd5a 358 PANTHER PTHR11959:SF1 6 356 1.6E-110 T 22-04-2016 PP4_RS14360 e331c1a1cd06ce4197b546971ba5cd5a 358 Pfam PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal 5 143 7.1E-68 T 22-04-2016 PP4_RS14360 e331c1a1cd06ce4197b546971ba5cd5a 358 Gene3D G3DSA:3.10.180.10 156 355 3.9E-66 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PP4_RS14360 e331c1a1cd06ce4197b546971ba5cd5a 358 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 160 276 3.1E-18 T 22-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain PP4_RS21085 4684877c1dd0674a51ac5db6329a2b4e 401 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 214 233 - T 22-04-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site PP4_RS21085 4684877c1dd0674a51ac5db6329a2b4e 401 SUPERFAMILY SSF53383 5 398 1.18E-107 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS21085 4684877c1dd0674a51ac5db6329a2b4e 401 Pfam PF00266 Aminotransferase class-V 24 389 7.5E-139 T 22-04-2016 IPR000192 Aminotransferase class V domain PP4_RS21085 4684877c1dd0674a51ac5db6329a2b4e 401 Gene3D G3DSA:3.90.1150.10 276 400 4.8E-42 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS21085 4684877c1dd0674a51ac5db6329a2b4e 401 PANTHER PTHR11601:SF17 5 401 5.4E-147 T 22-04-2016 PP4_RS21085 4684877c1dd0674a51ac5db6329a2b4e 401 PANTHER PTHR11601 5 401 5.4E-147 T 22-04-2016 PP4_RS21085 4684877c1dd0674a51ac5db6329a2b4e 401 Gene3D G3DSA:3.40.640.10 39 275 2.0E-62 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS18025 9c2738acd8334446e70834fb218c29f8 602 PANTHER PTHR10804 13 188 2.5E-150 T 22-04-2016 PP4_RS18025 9c2738acd8334446e70834fb218c29f8 602 PANTHER PTHR10804 290 600 2.5E-150 T 22-04-2016 PP4_RS18025 9c2738acd8334446e70834fb218c29f8 602 PANTHER PTHR10804:SF87 13 188 2.5E-150 T 22-04-2016 PP4_RS18025 9c2738acd8334446e70834fb218c29f8 602 PANTHER PTHR10804:SF87 290 600 2.5E-150 T 22-04-2016 PP4_RS18025 9c2738acd8334446e70834fb218c29f8 602 Gene3D G3DSA:3.40.350.10 178 292 1.2E-7 T 22-04-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal PP4_RS18025 9c2738acd8334446e70834fb218c29f8 602 Gene3D G3DSA:3.40.350.10 13 149 9.9E-17 T 22-04-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal PP4_RS18025 9c2738acd8334446e70834fb218c29f8 602 SUPERFAMILY SSF53092 13 146 1.03E-10 T 22-04-2016 IPR028980 Creatinase/Aminopeptidase P, N-terminal PP4_RS18025 9c2738acd8334446e70834fb218c29f8 602 Pfam PF00557 Metallopeptidase family M24 318 531 2.7E-40 T 22-04-2016 IPR000994 Peptidase M24, structural domain PP4_RS18025 9c2738acd8334446e70834fb218c29f8 602 Pfam PF16189 Creatinase/Prolidase N-terminal domain 157 311 5.1E-37 T 22-04-2016 PP4_RS18025 9c2738acd8334446e70834fb218c29f8 602 SUPERFAMILY SSF55920 313 567 8.24E-50 T 22-04-2016 IPR000994 Peptidase M24, structural domain PP4_RS18025 9c2738acd8334446e70834fb218c29f8 602 Pfam PF01321 Creatinase/Prolidase N-terminal domain 14 144 2.0E-15 T 22-04-2016 IPR000587 Creatinase, N-terminal GO:0016787 PP4_RS18025 9c2738acd8334446e70834fb218c29f8 602 Pfam PF16188 C-terminal region of peptidase_M24 543 602 7.4E-24 T 22-04-2016 IPR032416 Peptidase M24, C-terminal domain PP4_RS18025 9c2738acd8334446e70834fb218c29f8 602 Gene3D G3DSA:3.90.230.10 309 569 2.3E-56 T 22-04-2016 IPR000994 Peptidase M24, structural domain PP4_RS02145 d03dbda9b4f5cb8b365e84918f60e4ff 341 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 4 310 1.7E-121 T 22-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 PP4_RS02145 d03dbda9b4f5cb8b365e84918f60e4ff 341 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 3 317 9.2E-134 T 22-04-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 PP4_RS02145 d03dbda9b4f5cb8b365e84918f60e4ff 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 97 116 3.0E-52 T 22-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 PP4_RS02145 d03dbda9b4f5cb8b365e84918f60e4ff 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 76 96 3.0E-52 T 22-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 PP4_RS02145 d03dbda9b4f5cb8b365e84918f60e4ff 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 267 276 3.0E-52 T 22-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 PP4_RS02145 d03dbda9b4f5cb8b365e84918f60e4ff 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 131 143 3.0E-52 T 22-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 PP4_RS02145 d03dbda9b4f5cb8b365e84918f60e4ff 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 154 175 3.0E-52 T 22-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 PP4_RS02145 d03dbda9b4f5cb8b365e84918f60e4ff 341 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 4 17 3.0E-52 T 22-04-2016 IPR017861 Kae1/TsaD family KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 PP4_RS02145 d03dbda9b4f5cb8b365e84918f60e4ff 341 Gene3D G3DSA:3.30.420.40 1 159 4.7E-51 T 22-04-2016 PP4_RS02145 d03dbda9b4f5cb8b365e84918f60e4ff 341 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 1 335 62.78 T 22-04-2016 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 PP4_RS02145 d03dbda9b4f5cb8b365e84918f60e4ff 341 SUPERFAMILY SSF53067 3 123 2.41E-32 T 22-04-2016 PP4_RS02145 d03dbda9b4f5cb8b365e84918f60e4ff 341 PANTHER PTHR11735:SF6 1 340 9.5E-167 T 22-04-2016 PP4_RS02145 d03dbda9b4f5cb8b365e84918f60e4ff 341 Pfam PF00814 Glycoprotease family 24 311 1.1E-100 T 22-04-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 PP4_RS02145 d03dbda9b4f5cb8b365e84918f60e4ff 341 PANTHER PTHR11735 1 340 9.5E-167 T 22-04-2016 PP4_RS02145 d03dbda9b4f5cb8b365e84918f60e4ff 341 SUPERFAMILY SSF53067 101 313 2.07E-43 T 22-04-2016 PP4_RS08060 d4d3df90e225aa0c2e61a210fe22a12b 287 SUPERFAMILY SSF51182 8 284 2.67E-69 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS08060 d4d3df90e225aa0c2e61a210fe22a12b 287 PANTHER PTHR13903:SF4 5 287 1.0E-82 T 22-04-2016 PP4_RS08060 d4d3df90e225aa0c2e61a210fe22a12b 287 Pfam PF02678 Pirin 25 122 6.5E-31 T 22-04-2016 IPR003829 Pirin, N-terminal domain PP4_RS08060 d4d3df90e225aa0c2e61a210fe22a12b 287 PANTHER PTHR13903 5 287 1.0E-82 T 22-04-2016 IPR012093 Pirin PP4_RS08060 d4d3df90e225aa0c2e61a210fe22a12b 287 Pfam PF05726 Pirin C-terminal cupin domain 175 271 1.0E-19 T 22-04-2016 IPR008778 Pirin, C-terminal domain PP4_RS08060 d4d3df90e225aa0c2e61a210fe22a12b 287 PIRSF PIRSF006232 1 282 9.1E-77 T 22-04-2016 IPR012093 Pirin PP4_RS08060 d4d3df90e225aa0c2e61a210fe22a12b 287 Gene3D G3DSA:2.60.120.10 14 246 7.6E-58 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS25450 f7479f10fbfbaf31b971fc23f7e69c2c 614 Gene3D G3DSA:3.50.50.60 24 100 9.5E-42 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS25450 f7479f10fbfbaf31b971fc23f7e69c2c 614 Gene3D G3DSA:3.50.50.60 412 459 9.5E-42 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS25450 f7479f10fbfbaf31b971fc23f7e69c2c 614 Gene3D G3DSA:3.50.50.60 218 314 9.5E-42 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS25450 f7479f10fbfbaf31b971fc23f7e69c2c 614 SUPERFAMILY SSF51905 26 316 1.36E-51 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS25450 f7479f10fbfbaf31b971fc23f7e69c2c 614 SUPERFAMILY SSF51905 413 455 1.36E-51 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS25450 f7479f10fbfbaf31b971fc23f7e69c2c 614 PANTHER PTHR10742 13 479 7.4E-120 T 22-04-2016 PP4_RS25450 f7479f10fbfbaf31b971fc23f7e69c2c 614 SUPERFAMILY SSF54373 297 401 1.33E-14 T 22-04-2016 PP4_RS25450 f7479f10fbfbaf31b971fc23f7e69c2c 614 PRINTS PR00757 Flavin-containing amine oxidase signature 403 425 7.3E-11 T 22-04-2016 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 PP4_RS25450 f7479f10fbfbaf31b971fc23f7e69c2c 614 PRINTS PR00757 Flavin-containing amine oxidase signature 434 451 7.3E-11 T 22-04-2016 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 PP4_RS25450 f7479f10fbfbaf31b971fc23f7e69c2c 614 PRINTS PR00757 Flavin-containing amine oxidase signature 29 48 7.3E-11 T 22-04-2016 IPR001613 Flavin amine oxidase GO:0016491|GO:0055114 PP4_RS25450 f7479f10fbfbaf31b971fc23f7e69c2c 614 Gene3D G3DSA:1.10.405.10 126 202 1.3E-5 T 22-04-2016 PP4_RS25450 f7479f10fbfbaf31b971fc23f7e69c2c 614 Pfam PF01593 Flavin containing amine oxidoreductase 37 451 5.6E-46 T 22-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 PP4_RS25450 f7479f10fbfbaf31b971fc23f7e69c2c 614 PANTHER PTHR10742:SF255 13 479 7.4E-120 T 22-04-2016 PP4_RS02630 27dd1aa99b2030a4aa3a2dc2b5610f51 333 SMART SM00662 23 233 4.9E-109 T 22-04-2016 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PP4_RS02630 27dd1aa99b2030a4aa3a2dc2b5610f51 333 Gene3D G3DSA:3.30.1360.10 11 65 2.2E-9 T 22-04-2016 PP4_RS02630 27dd1aa99b2030a4aa3a2dc2b5610f51 333 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 244 307 4.4E-24 T 22-04-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PP4_RS02630 27dd1aa99b2030a4aa3a2dc2b5610f51 333 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 64 155 4.6E-26 T 22-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PP4_RS02630 27dd1aa99b2030a4aa3a2dc2b5610f51 333 SUPERFAMILY SSF47789 250 323 8.89E-26 T 22-04-2016 PP4_RS02630 27dd1aa99b2030a4aa3a2dc2b5610f51 333 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 255 328 1.0E-36 T 22-04-2016 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PP4_RS02630 27dd1aa99b2030a4aa3a2dc2b5610f51 333 SUPERFAMILY SSF56553 53 177 7.46E-43 T 22-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PP4_RS02630 27dd1aa99b2030a4aa3a2dc2b5610f51 333 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 29 227 4.5E-23 T 22-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PP4_RS02630 27dd1aa99b2030a4aa3a2dc2b5610f51 333 PANTHER PTHR32108 1 329 1.8E-151 T 22-04-2016 PP4_RS02630 27dd1aa99b2030a4aa3a2dc2b5610f51 333 Gene3D G3DSA:2.170.120.12 66 176 5.5E-43 T 22-04-2016 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: REACT_1788 PP4_RS02630 27dd1aa99b2030a4aa3a2dc2b5610f51 333 SUPERFAMILY SSF55257 6 53 3.14E-29 T 22-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PP4_RS02630 27dd1aa99b2030a4aa3a2dc2b5610f51 333 SUPERFAMILY SSF55257 178 232 3.14E-29 T 22-04-2016 IPR009025 DNA-directed RNA polymerase, RBP11-like dimerisation domain GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PP4_RS02630 27dd1aa99b2030a4aa3a2dc2b5610f51 333 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 5 316 34.987 T 22-04-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PP4_RS02630 27dd1aa99b2030a4aa3a2dc2b5610f51 333 PANTHER PTHR32108:SF0 1 329 1.8E-151 T 22-04-2016 PP4_RS02630 27dd1aa99b2030a4aa3a2dc2b5610f51 333 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 24 315 4.1E-109 T 22-04-2016 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 PP4_RS02630 27dd1aa99b2030a4aa3a2dc2b5610f51 333 Gene3D G3DSA:1.10.150.20 244 326 9.0E-37 T 22-04-2016 PP4_RS09635 3e75c0b169b14448324ab3ce09cf4ee3 134 Gene3D G3DSA:3.30.429.10 2 132 7.1E-37 T 22-04-2016 PP4_RS09635 3e75c0b169b14448324ab3ce09cf4ee3 134 Pfam PF02962 5-carboxymethyl-2-hydroxymuconate isomerase 2 115 2.7E-12 T 22-04-2016 IPR004220 5-carboxymethyl-2-hydroxymuconate isomerase GO:0008704|GO:0019439 KEGG: 00350+5.3.3.10|UniPathway: UPA00208 PP4_RS09635 3e75c0b169b14448324ab3ce09cf4ee3 134 PANTHER PTHR37950:SF1 2 113 2.1E-15 T 22-04-2016 PP4_RS09635 3e75c0b169b14448324ab3ce09cf4ee3 134 SUPERFAMILY SSF55331 2 121 5.95E-24 T 22-04-2016 IPR014347 Tautomerase/MIF superfamily PP4_RS09635 3e75c0b169b14448324ab3ce09cf4ee3 134 PANTHER PTHR37950 2 113 2.1E-15 T 22-04-2016 PP4_RS14705 28f9ae4f4915a9e67eedfd5880d51fce 240 SUPERFAMILY SSF56300 2 223 1.9E-26 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS14705 28f9ae4f4915a9e67eedfd5880d51fce 240 TIGRFAM TIGR01854 lipid_A_lpxH: UDP-2,3-diacylglucosamine diphosphatase 3 231 1.0E-98 T 22-04-2016 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54|UniPathway: UPA00359 PP4_RS14705 28f9ae4f4915a9e67eedfd5880d51fce 240 Hamap MF_00575 UDP-2,3-diacylglucosamine hydrolase [lpxH]. 1 240 122.851 T 22-04-2016 IPR010138 UDP-2,3-diacylglucosamine hydrolase GO:0005737|GO:0009245|GO:0016462 KEGG: 00540+3.6.1.54|UniPathway: UPA00359 PP4_RS14705 28f9ae4f4915a9e67eedfd5880d51fce 240 Gene3D G3DSA:3.60.21.10 172 203 2.3E-19 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS14705 28f9ae4f4915a9e67eedfd5880d51fce 240 Gene3D G3DSA:3.60.21.10 2 124 2.3E-19 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS14705 28f9ae4f4915a9e67eedfd5880d51fce 240 PANTHER PTHR34990 3 239 3.8E-103 T 22-04-2016 PP4_RS14705 28f9ae4f4915a9e67eedfd5880d51fce 240 PANTHER PTHR34990:SF1 3 239 3.8E-103 T 22-04-2016 PP4_RS14705 28f9ae4f4915a9e67eedfd5880d51fce 240 Pfam PF00149 Calcineurin-like phosphoesterase 2 198 1.6E-8 T 22-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 PP4_RS22415 07498b5a9306111f30af3d37b6dfb826 297 PANTHER PTHR33281:SF3 23 290 4.0E-57 T 22-04-2016 PP4_RS22415 07498b5a9306111f30af3d37b6dfb826 297 PANTHER PTHR33281 23 290 4.0E-57 T 22-04-2016 PP4_RS22415 07498b5a9306111f30af3d37b6dfb826 297 Pfam PF01062 Bestrophin, RFP-TM, chloride channel 33 282 1.4E-31 T 22-04-2016 IPR021134 Bestrophin/UPF0187 PP4_RS23100 311e0abd8b8d7d560f1672cb2c7f9dc9 104 Pfam PF00829 Ribosomal prokaryotic L21 protein 3 102 7.4E-39 T 22-04-2016 IPR028909 Ribosomal protein L21-like GO:0005840 PP4_RS23100 311e0abd8b8d7d560f1672cb2c7f9dc9 104 TIGRFAM TIGR00061 L21: ribosomal protein bL21 3 103 1.8E-42 T 22-04-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS23100 311e0abd8b8d7d560f1672cb2c7f9dc9 104 ProSitePatterns PS01169 Ribosomal protein L21 signature. 73 95 - T 22-04-2016 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS23100 311e0abd8b8d7d560f1672cb2c7f9dc9 104 PANTHER PTHR21349 3 103 1.3E-43 T 22-04-2016 PP4_RS23100 311e0abd8b8d7d560f1672cb2c7f9dc9 104 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 2 104 26.804 T 22-04-2016 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS23100 311e0abd8b8d7d560f1672cb2c7f9dc9 104 SUPERFAMILY SSF141091 3 103 8.11E-38 T 22-04-2016 IPR028909 Ribosomal protein L21-like GO:0005840 PP4_RS17020 7e0bf02876220d7e837602689a4ba249 708 PANTHER PTHR32552:SF19 54 708 2.2E-239 T 22-04-2016 PP4_RS17020 7e0bf02876220d7e837602689a4ba249 708 PANTHER PTHR32552:SF19 16 37 2.2E-239 T 22-04-2016 PP4_RS17020 7e0bf02876220d7e837602689a4ba249 708 Pfam PF00593 TonB dependent receptor 469 707 3.9E-28 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS17020 7e0bf02876220d7e837602689a4ba249 708 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 691 708 - T 22-04-2016 IPR010917 TonB-dependent receptor, conserved site PP4_RS17020 7e0bf02876220d7e837602689a4ba249 708 PANTHER PTHR32552 54 708 2.2E-239 T 22-04-2016 PP4_RS17020 7e0bf02876220d7e837602689a4ba249 708 PANTHER PTHR32552 16 37 2.2E-239 T 22-04-2016 PP4_RS17020 7e0bf02876220d7e837602689a4ba249 708 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 64 708 9.0E-88 T 22-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 PP4_RS17020 7e0bf02876220d7e837602689a4ba249 708 SUPERFAMILY SSF56935 55 708 1.98E-126 T 22-04-2016 PP4_RS17020 7e0bf02876220d7e837602689a4ba249 708 Gene3D G3DSA:2.40.170.20 182 708 5.0E-118 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS17020 7e0bf02876220d7e837602689a4ba249 708 Pfam PF07715 TonB-dependent Receptor Plug Domain 63 166 8.7E-23 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS17020 7e0bf02876220d7e837602689a4ba249 708 Gene3D G3DSA:2.170.130.10 45 175 6.2E-34 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS12420 44654895491223ab3552013a607c7983 160 TIGRFAM TIGR03357 VI_zyme: type VI secretion system lysozyme-like protein 9 156 4.4E-34 T 22-04-2016 IPR017737 Type VI secretion system, lysozyme-related protein PP4_RS12420 44654895491223ab3552013a607c7983 160 Pfam PF04965 Gene 25-like lysozyme 36 135 7.3E-14 T 22-04-2016 IPR007048 GpW/Gp25/anti-adapter protein IraD PP4_RS12420 44654895491223ab3552013a607c7983 160 PANTHER PTHR38595 1 151 2.2E-12 T 22-04-2016 PP4_RS12420 44654895491223ab3552013a607c7983 160 SUPERFAMILY SSF160719 35 146 3.92E-8 T 22-04-2016 PP4_RS12420 44654895491223ab3552013a607c7983 160 Gene3D G3DSA:3.10.450.40 72 145 3.7E-4 T 22-04-2016 PP4_RS17485 f72db0ec93c4023c0c2c617fc980a33f 396 PANTHER PTHR30349 1 381 1.1E-135 T 22-04-2016 PP4_RS17485 f72db0ec93c4023c0c2c617fc980a33f 396 SUPERFAMILY SSF54506 190 394 7.85E-77 T 22-04-2016 PP4_RS17485 f72db0ec93c4023c0c2c617fc980a33f 396 Gene3D G3DSA:3.10.310.10 2 195 1.3E-90 T 22-04-2016 PP4_RS17485 f72db0ec93c4023c0c2c617fc980a33f 396 PANTHER PTHR30349:SF21 1 381 1.1E-135 T 22-04-2016 PP4_RS17485 f72db0ec93c4023c0c2c617fc980a33f 396 TIGRFAM TIGR02334 prpF: probable AcnD-accessory protein PrpF 4 396 2.0E-232 T 22-04-2016 IPR012709 2-methyl-aconitate isomerase PrpF GO:0016853|GO:0019629 UniPathway: UPA00946 PP4_RS17485 f72db0ec93c4023c0c2c617fc980a33f 396 Gene3D G3DSA:3.10.310.10 196 375 9.7E-81 T 22-04-2016 PP4_RS17485 f72db0ec93c4023c0c2c617fc980a33f 396 Pfam PF04303 PrpF protein 6 392 3.6E-176 T 22-04-2016 IPR007400 PrpF protein PP4_RS17485 f72db0ec93c4023c0c2c617fc980a33f 396 SUPERFAMILY SSF54506 2 182 1.26E-70 T 22-04-2016 PP4_RS00175 1b4efaf69ac84d213fbd88818f6aa8b6 375 SUPERFAMILY SSF56954 3 367 3.4E-80 T 22-04-2016 PP4_RS00175 1b4efaf69ac84d213fbd88818f6aa8b6 375 Gene3D G3DSA:1.20.1600.10 3 366 1.2E-64 T 22-04-2016 PP4_RS00175 1b4efaf69ac84d213fbd88818f6aa8b6 375 PANTHER PTHR30203:SF1 1 366 9.4E-68 T 22-04-2016 PP4_RS00175 1b4efaf69ac84d213fbd88818f6aa8b6 375 Pfam PF02321 Outer membrane efflux protein 199 364 2.9E-24 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PP4_RS00175 1b4efaf69ac84d213fbd88818f6aa8b6 375 Pfam PF02321 Outer membrane efflux protein 3 167 7.5E-24 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PP4_RS00175 1b4efaf69ac84d213fbd88818f6aa8b6 375 PANTHER PTHR30203 1 366 9.4E-68 T 22-04-2016 PP4_RS01650 d2474b5ed54aad237ee52db619b22449 458 Gene3D G3DSA:3.30.1330.90 11 156 6.8E-51 T 22-04-2016 IPR029009 Allosteric substrate binding domain PP4_RS01650 d2474b5ed54aad237ee52db619b22449 458 Pfam PF03315 Serine dehydratase beta chain 4 154 2.1E-54 T 22-04-2016 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17|UniPathway: UPA00138 PP4_RS01650 d2474b5ed54aad237ee52db619b22449 458 Pfam PF03313 Serine dehydratase alpha chain 186 452 1.6E-102 T 22-04-2016 IPR005130 Serine dehydratase-like, alpha subunit PP4_RS01650 d2474b5ed54aad237ee52db619b22449 458 PANTHER PTHR30182:SF1 1 454 1.1E-237 T 22-04-2016 PP4_RS01650 d2474b5ed54aad237ee52db619b22449 458 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 3 454 1.0E-209 T 22-04-2016 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17|UniPathway: UPA00138 PP4_RS01650 d2474b5ed54aad237ee52db619b22449 458 PANTHER PTHR30182 1 454 1.1E-237 T 22-04-2016 PP4_RS01650 d2474b5ed54aad237ee52db619b22449 458 SUPERFAMILY SSF143548 17 154 2.88E-44 T 22-04-2016 IPR029009 Allosteric substrate binding domain PP4_RS10755 efad218da36bc1fc53784399b9415e87 96 ProDom PD006619 ISOMERASE MUCONOLACTONE DELTA-ISOMERASE HYDROCARBONS MIASE AROMATIC CATABOLISM METHYLMUCONOLACTONE DIRECT SEQUENCING 1 57 3.0E-28 T 22-04-2016 IPR003464 Muconolactone delta-isomerase GO:0006725 KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185|UniPathway: UPA00157 PP4_RS10755 efad218da36bc1fc53784399b9415e87 96 TIGRFAM TIGR03221 muco_delta: muconolactone delta-isomerase 2 91 1.5E-46 T 22-04-2016 IPR003464 Muconolactone delta-isomerase GO:0006725 KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185|UniPathway: UPA00157 PP4_RS10755 efad218da36bc1fc53784399b9415e87 96 SUPERFAMILY SSF54909 1 95 3.65E-37 T 22-04-2016 IPR011008 Dimeric alpha-beta barrel PP4_RS10755 efad218da36bc1fc53784399b9415e87 96 PIRSF PIRSF001486 1 94 1.1E-44 T 22-04-2016 IPR003464 Muconolactone delta-isomerase GO:0006725 KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185|UniPathway: UPA00157 PP4_RS10755 efad218da36bc1fc53784399b9415e87 96 Pfam PF02426 Muconolactone delta-isomerase 1 90 1.3E-38 T 22-04-2016 IPR026029 Muconolactone isomerase domain KEGG: 00362+5.3.3.4|MetaCyc: PWY-6185|UniPathway: UPA00157 PP4_RS03225 a479753632a26db969ae6cd1d353e5b8 451 SUPERFAMILY SSF52440 5 116 2.95E-46 T 22-04-2016 IPR016185 Pre-ATP-grasp domain PP4_RS03225 a479753632a26db969ae6cd1d353e5b8 451 Gene3D G3DSA:3.30.470.20 207 447 1.3E-95 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PP4_RS03225 a479753632a26db969ae6cd1d353e5b8 451 Gene3D G3DSA:3.40.50.20 5 132 1.2E-50 T 22-04-2016 IPR016185 Pre-ATP-grasp domain PP4_RS03225 a479753632a26db969ae6cd1d353e5b8 451 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 157 171 - T 22-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 PP4_RS03225 a479753632a26db969ae6cd1d353e5b8 451 SUPERFAMILY SSF56059 118 331 7.95E-66 T 22-04-2016 PP4_RS03225 a479753632a26db969ae6cd1d353e5b8 451 Pfam PF02785 Biotin carboxylase C-terminal domain 339 444 2.3E-39 T 22-04-2016 IPR005482 Biotin carboxylase, C-terminal PP4_RS03225 a479753632a26db969ae6cd1d353e5b8 451 TIGRFAM TIGR00514 accC: acetyl-CoA carboxylase, biotin carboxylase subunit 5 448 4.4E-227 T 22-04-2016 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase GO:0016874 PP4_RS03225 a479753632a26db969ae6cd1d353e5b8 451 Gene3D G3DSA:3.30.1490.20 133 206 9.6E-28 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 PP4_RS03225 a479753632a26db969ae6cd1d353e5b8 451 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 118 325 9.2E-83 T 22-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 PP4_RS03225 a479753632a26db969ae6cd1d353e5b8 451 SUPERFAMILY SSF51246 334 446 7.85E-43 T 22-04-2016 IPR011054 Rudiment single hybrid motif PP4_RS03225 a479753632a26db969ae6cd1d353e5b8 451 SMART SM00878 339 444 3.5E-65 T 22-04-2016 IPR005482 Biotin carboxylase, C-terminal PP4_RS03225 a479753632a26db969ae6cd1d353e5b8 451 Pfam PF00289 Biotin carboxylase, N-terminal domain 5 113 6.1E-44 T 22-04-2016 IPR005481 Biotin carboxylase-like, N-terminal domain PP4_RS03225 a479753632a26db969ae6cd1d353e5b8 451 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 289 296 - T 22-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 PP4_RS03225 a479753632a26db969ae6cd1d353e5b8 451 PANTHER PTHR18866 4 444 7.7E-288 T 22-04-2016 PP4_RS13325 cdf376d495cdac8160352b284dae0590 305 SUPERFAMILY SSF46785 11 111 1.52E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS13325 cdf376d495cdac8160352b284dae0590 305 Gene3D G3DSA:3.40.190.10 101 188 1.2E-14 T 22-04-2016 PP4_RS13325 cdf376d495cdac8160352b284dae0590 305 Gene3D G3DSA:3.40.190.10 189 274 4.5E-15 T 22-04-2016 PP4_RS13325 cdf376d495cdac8160352b284dae0590 305 Pfam PF03466 LysR substrate binding domain 98 304 1.1E-34 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS13325 cdf376d495cdac8160352b284dae0590 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 14 73 3.5E-14 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS13325 cdf376d495cdac8160352b284dae0590 305 PANTHER PTHR30126:SF3 11 303 2.4E-59 T 22-04-2016 PP4_RS13325 cdf376d495cdac8160352b284dae0590 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 50 61 6.5E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS13325 cdf376d495cdac8160352b284dae0590 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 40 6.5E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS13325 cdf376d495cdac8160352b284dae0590 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 50 6.5E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS13325 cdf376d495cdac8160352b284dae0590 305 PANTHER PTHR30126 11 303 2.4E-59 T 22-04-2016 PP4_RS13325 cdf376d495cdac8160352b284dae0590 305 Gene3D G3DSA:1.10.10.10 12 93 9.9E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS13325 cdf376d495cdac8160352b284dae0590 305 SUPERFAMILY SSF53850 99 303 8.69E-36 T 22-04-2016 PP4_RS13145 64cc6c836383de299ea9392fc9fb503c 358 TIGRFAM TIGR02160 PA_CoA_Oxy5: phenylacetate-CoA oxygenase/reductase, PaaK subunit 4 356 4.1E-139 T 22-04-2016 IPR011884 Phenylacetate-CoA oxygenase/reductase, PaaK subunit GO:0010124 KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.-|UniPathway: UPA00930 PP4_RS13145 64cc6c836383de299ea9392fc9fb503c 358 PRINTS PR00410 Phenol hydroxylase reductase family signature 212 220 1.5E-5 T 22-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PP4_RS13145 64cc6c836383de299ea9392fc9fb503c 358 PRINTS PR00410 Phenol hydroxylase reductase family signature 116 135 1.5E-5 T 22-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PP4_RS13145 64cc6c836383de299ea9392fc9fb503c 358 PRINTS PR00410 Phenol hydroxylase reductase family signature 36 48 1.5E-5 T 22-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PP4_RS13145 64cc6c836383de299ea9392fc9fb503c 358 PRINTS PR00410 Phenol hydroxylase reductase family signature 141 150 1.5E-5 T 22-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PP4_RS13145 64cc6c836383de299ea9392fc9fb503c 358 Gene3D G3DSA:3.10.20.30 239 356 7.6E-33 T 22-04-2016 IPR012675 Beta-grasp domain PP4_RS13145 64cc6c836383de299ea9392fc9fb503c 358 SUPERFAMILY SSF63380 3 105 1.38E-24 T 22-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 PP4_RS13145 64cc6c836383de299ea9392fc9fb503c 358 Gene3D G3DSA:3.40.50.80 95 238 2.1E-37 T 22-04-2016 PP4_RS13145 64cc6c836383de299ea9392fc9fb503c 358 Pfam PF00970 Oxidoreductase FAD-binding domain 7 103 3.9E-14 T 22-04-2016 IPR008333 Oxidoreductase, FAD-binding domain PP4_RS13145 64cc6c836383de299ea9392fc9fb503c 358 SUPERFAMILY SSF54292 236 354 6.47E-28 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS13145 64cc6c836383de299ea9392fc9fb503c 358 Pfam PF00175 Oxidoreductase NAD-binding domain 118 226 4.3E-15 T 22-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 PP4_RS13145 64cc6c836383de299ea9392fc9fb503c 358 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 273 346 2.9E-15 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS13145 64cc6c836383de299ea9392fc9fb503c 358 Gene3D G3DSA:2.40.30.10 3 94 3.1E-25 T 22-04-2016 PP4_RS13145 64cc6c836383de299ea9392fc9fb503c 358 PANTHER PTHR19370:SF93 4 264 5.5E-74 T 22-04-2016 PP4_RS13145 64cc6c836383de299ea9392fc9fb503c 358 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 304 312 - T 22-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 PP4_RS13145 64cc6c836383de299ea9392fc9fb503c 358 PANTHER PTHR19370 4 264 5.5E-74 T 22-04-2016 PP4_RS13145 64cc6c836383de299ea9392fc9fb503c 358 SUPERFAMILY SSF52343 94 242 2.1E-33 T 22-04-2016 PP4_RS26190 db6845fed55c696de125387c4579ca63 182 PANTHER PTHR40202 1 172 1.2E-43 T 22-04-2016 PP4_RS26190 db6845fed55c696de125387c4579ca63 182 Gene3D G3DSA:1.10.3210.10 37 109 2.4E-6 T 22-04-2016 IPR006674 HD domain PP4_RS26190 db6845fed55c696de125387c4579ca63 182 PANTHER PTHR40202:SF1 1 172 1.2E-43 T 22-04-2016 PP4_RS26190 db6845fed55c696de125387c4579ca63 182 TIGRFAM TIGR03276 Phn-HD: phosphonate degradation operons associated HDIG domain protein 6 178 6.0E-66 T 22-04-2016 IPR017670 Phosphonate degradation operon associated HDIG domain protein PP4_RS26190 db6845fed55c696de125387c4579ca63 182 Pfam PF01966 HD domain 34 106 2.5E-7 T 22-04-2016 IPR006674 HD domain PP4_RS26190 db6845fed55c696de125387c4579ca63 182 SUPERFAMILY SSF109604 35 105 1.14E-10 T 22-04-2016 PP4_RS26190 db6845fed55c696de125387c4579ca63 182 TIGRFAM TIGR00277 HDIG: HDIG domain 37 103 1.5E-7 T 22-04-2016 IPR006675 HDIG domain PP4_RS26080 b2cccac582b4d5524cc2bdba6f8204e3 223 SMART SM00382 27 214 8.3E-12 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS26080 b2cccac582b4d5524cc2bdba6f8204e3 223 Pfam PF00005 ABC transporter 18 165 1.0E-31 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS26080 b2cccac582b4d5524cc2bdba6f8204e3 223 TIGRFAM TIGR02673 FtsE: cell division ATP-binding protein FtsE 1 214 2.0E-85 T 22-04-2016 IPR005286 Cell division protein FtsE, ATP-binding GO:0005524|GO:0051301 PP4_RS26080 b2cccac582b4d5524cc2bdba6f8204e3 223 PANTHER PTHR24220:SF470 3 220 1.1E-113 T 22-04-2016 PP4_RS26080 b2cccac582b4d5524cc2bdba6f8204e3 223 Gene3D G3DSA:3.40.50.300 1 221 2.1E-67 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26080 b2cccac582b4d5524cc2bdba6f8204e3 223 PANTHER PTHR24220 3 220 1.1E-113 T 22-04-2016 PP4_RS26080 b2cccac582b4d5524cc2bdba6f8204e3 223 SUPERFAMILY SSF52540 1 220 8.78E-66 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS18530 dea1b3a1d443ea4ad60d366efccd6838 613 Gene3D G3DSA:3.60.21.10 130 159 9.8E-4 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS18530 dea1b3a1d443ea4ad60d366efccd6838 613 Gene3D G3DSA:3.60.21.10 301 334 9.8E-4 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS18530 dea1b3a1d443ea4ad60d366efccd6838 613 Gene3D G3DSA:3.60.21.10 383 527 9.8E-4 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS18530 dea1b3a1d443ea4ad60d366efccd6838 613 Gene3D G3DSA:3.60.21.10 200 201 9.8E-4 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS18530 dea1b3a1d443ea4ad60d366efccd6838 613 PANTHER PTHR37031 292 603 7.1E-102 T 22-04-2016 PP4_RS18530 dea1b3a1d443ea4ad60d366efccd6838 613 PANTHER PTHR37031 113 228 7.1E-102 T 22-04-2016 PP4_RS18530 dea1b3a1d443ea4ad60d366efccd6838 613 PANTHER PTHR37031:SF2 292 603 7.1E-102 T 22-04-2016 PP4_RS18530 dea1b3a1d443ea4ad60d366efccd6838 613 PANTHER PTHR37031:SF2 113 228 7.1E-102 T 22-04-2016 PP4_RS18530 dea1b3a1d443ea4ad60d366efccd6838 613 SUPERFAMILY SSF56300 132 177 5.56E-9 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS18530 dea1b3a1d443ea4ad60d366efccd6838 613 SUPERFAMILY SSF56300 381 534 5.56E-9 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS18530 dea1b3a1d443ea4ad60d366efccd6838 613 SUPERFAMILY SSF56300 296 338 5.56E-9 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS07385 7e8edd37da58f50571948603420e830d 662 Pfam PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal 321 641 7.1E-124 T 22-04-2016 IPR032523 Cytochrome c-type biogenesis protein CcmF, C-terminal PP4_RS07385 7e8edd37da58f50571948603420e830d 662 TIGRFAM TIGR00353 nrfE: cytochrome c-type biogenesis protein CcmF 58 644 8.1E-232 T 22-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 PP4_RS07385 7e8edd37da58f50571948603420e830d 662 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 300 316 3.5E-95 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 PP4_RS07385 7e8edd37da58f50571948603420e830d 662 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 316 335 3.5E-95 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 PP4_RS07385 7e8edd37da58f50571948603420e830d 662 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 250 270 3.5E-95 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 PP4_RS07385 7e8edd37da58f50571948603420e830d 662 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 137 154 3.5E-95 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 PP4_RS07385 7e8edd37da58f50571948603420e830d 662 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 280 300 3.5E-95 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 PP4_RS07385 7e8edd37da58f50571948603420e830d 662 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 216 242 3.5E-95 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 PP4_RS07385 7e8edd37da58f50571948603420e830d 662 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 85 111 3.5E-95 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 PP4_RS07385 7e8edd37da58f50571948603420e830d 662 PRINTS PR01410 Cytochrome c-type biogenesis protein signature 165 187 3.5E-95 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 PP4_RS07385 7e8edd37da58f50571948603420e830d 662 PANTHER PTHR30009:SF0 476 659 0.0 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 PP4_RS07385 7e8edd37da58f50571948603420e830d 662 PANTHER PTHR30009:SF0 6 423 0.0 T 22-04-2016 IPR003567 Cytochrome c-type biogenesis protein GO:0015232|GO:0015886|GO:0016020|GO:0017004 PP4_RS07385 7e8edd37da58f50571948603420e830d 662 PANTHER PTHR30009 476 659 0.0 T 22-04-2016 PP4_RS07385 7e8edd37da58f50571948603420e830d 662 PANTHER PTHR30009 6 423 0.0 T 22-04-2016 PP4_RS07385 7e8edd37da58f50571948603420e830d 662 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 357 374 4.2E-64 T 22-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 PP4_RS07385 7e8edd37da58f50571948603420e830d 662 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 118 141 4.2E-64 T 22-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 PP4_RS07385 7e8edd37da58f50571948603420e830d 662 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 319 334 4.2E-64 T 22-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 PP4_RS07385 7e8edd37da58f50571948603420e830d 662 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 195 210 4.2E-64 T 22-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 PP4_RS07385 7e8edd37da58f50571948603420e830d 662 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 634 647 4.2E-64 T 22-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 PP4_RS07385 7e8edd37da58f50571948603420e830d 662 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 400 419 4.2E-64 T 22-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 PP4_RS07385 7e8edd37da58f50571948603420e830d 662 PRINTS PR01411 Cytochrome c-type biogenesis protein CcmF signature 9 33 4.2E-64 T 22-04-2016 IPR003568 Cytochrome c-type biogenesis protein CcmF GO:0015232|GO:0015886|GO:0016020|GO:0017004 PP4_RS07385 7e8edd37da58f50571948603420e830d 662 Pfam PF01578 Cytochrome C assembly protein 94 301 4.0E-54 T 22-04-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 PP4_RS03285 aae0a761b79ade5f8a35bc008535fe15 1633 SUPERFAMILY SSF48239 1154 1410 3.34E-39 T 22-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid PP4_RS03285 aae0a761b79ade5f8a35bc008535fe15 1633 SMART SM01359 738 886 2.2E-37 T 22-04-2016 IPR011625 Alpha-2-macroglobulin, N-terminal 2 PP4_RS03285 aae0a761b79ade5f8a35bc008535fe15 1633 PANTHER PTHR11412:SF104 245 941 1.5E-184 T 22-04-2016 PP4_RS03285 aae0a761b79ade5f8a35bc008535fe15 1633 Pfam PF07703 Alpha-2-macroglobulin family N-terminal region 739 886 6.3E-12 T 22-04-2016 IPR011625 Alpha-2-macroglobulin, N-terminal 2 PP4_RS03285 aae0a761b79ade5f8a35bc008535fe15 1633 Pfam PF11974 Alpha-2-macroglobulin MG1 domain 282 375 2.1E-18 T 22-04-2016 IPR021868 Alpha-2-macroglobulin MG1 domain PP4_RS03285 aae0a761b79ade5f8a35bc008535fe15 1633 Pfam PF10569 Alpha-macro-globulin thiol-ester bond-forming region 1162 1180 2.0E-5 T 22-04-2016 IPR019565 Alpha-2-macroglobulin, thiol-ester bond-forming PP4_RS03285 aae0a761b79ade5f8a35bc008535fe15 1633 Pfam PF07678 A-macroglobulin complement component 1208 1265 2.3E-4 T 22-04-2016 IPR011626 Alpha-macroglobulin complement component GO:0005615 PP4_RS03285 aae0a761b79ade5f8a35bc008535fe15 1633 Pfam PF01835 MG2 domain 381 473 6.4E-22 T 22-04-2016 IPR002890 Alpha-2-macroglobulin, N-terminal GO:0004866 PP4_RS03285 aae0a761b79ade5f8a35bc008535fe15 1633 SMART SM01360 948 1037 1.4E-19 T 22-04-2016 IPR001599 Alpha-2-macroglobulin GO:0004866 PP4_RS03285 aae0a761b79ade5f8a35bc008535fe15 1633 PANTHER PTHR11412 245 941 1.5E-184 T 22-04-2016 PP4_RS03285 aae0a761b79ade5f8a35bc008535fe15 1633 Pfam PF00207 Alpha-2-macroglobulin family 957 1036 4.4E-7 T 22-04-2016 IPR001599 Alpha-2-macroglobulin GO:0004866 PP4_RS03285 aae0a761b79ade5f8a35bc008535fe15 1633 PIRSF PIRSF038980 3 1633 0.0 T 22-04-2016 IPR026284 Alpha-2-macroglobulin domain protein, bacteria PP4_RS03285 aae0a761b79ade5f8a35bc008535fe15 1633 Gene3D G3DSA:1.50.10.20 1155 1410 3.8E-36 T 22-04-2016 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid PP4_RS03375 774e8f37b04b78fb8dc44e12bd05cf9e 65 Gene3D G3DSA:3.30.70.100 2 63 3.3E-21 T 22-04-2016 PP4_RS03375 774e8f37b04b78fb8dc44e12bd05cf9e 65 ProSitePatterns PS01047 Heavy-metal-associated domain. 6 35 - T 22-04-2016 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 PP4_RS03375 774e8f37b04b78fb8dc44e12bd05cf9e 65 SUPERFAMILY SSF55008 2 64 1.22E-16 T 22-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 PP4_RS03375 774e8f37b04b78fb8dc44e12bd05cf9e 65 Pfam PF00403 Heavy-metal-associated domain 3 61 3.5E-14 T 22-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 PP4_RS26005 0398688c39fe375013bb5a1f3397b218 272 PIRSF PIRSF000193 3 269 1.5E-82 T 22-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 PP4_RS26005 0398688c39fe375013bb5a1f3397b218 272 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 5 99 2.7E-22 T 22-04-2016 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal PP4_RS26005 0398688c39fe375013bb5a1f3397b218 272 Gene3D G3DSA:3.40.50.720 2 158 7.0E-49 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS26005 0398688c39fe375013bb5a1f3397b218 272 SUPERFAMILY SSF48179 161 269 4.76E-34 T 22-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PP4_RS26005 0398688c39fe375013bb5a1f3397b218 272 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 4 266 27.512 T 22-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 PP4_RS26005 0398688c39fe375013bb5a1f3397b218 272 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 6 266 4.4E-80 T 22-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 PP4_RS26005 0398688c39fe375013bb5a1f3397b218 272 Gene3D G3DSA:1.10.3730.10 161 266 2.9E-36 T 22-04-2016 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 PP4_RS26005 0398688c39fe375013bb5a1f3397b218 272 PANTHER PTHR11645 1 272 2.6E-115 T 22-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 PP4_RS26005 0398688c39fe375013bb5a1f3397b218 272 PANTHER PTHR11645:SF0 1 272 2.6E-115 T 22-04-2016 PP4_RS26005 0398688c39fe375013bb5a1f3397b218 272 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 162 266 7.6E-36 T 22-04-2016 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 PP4_RS26005 0398688c39fe375013bb5a1f3397b218 272 SUPERFAMILY SSF51735 5 159 2.47E-38 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS26005 0398688c39fe375013bb5a1f3397b218 272 ProSitePatterns PS00521 Delta 1-pyrroline-5-carboxylate reductase signature. 222 244 - T 22-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 PP4_RS07815 6af6bbf4df9505f7bebfedbfa3104e02 943 Gene3D G3DSA:3.30.365.10 808 942 5.7E-57 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS07815 6af6bbf4df9505f7bebfedbfa3104e02 943 Gene3D G3DSA:3.30.365.10 452 553 5.7E-57 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS07815 6af6bbf4df9505f7bebfedbfa3104e02 943 PANTHER PTHR11908:SF71 638 682 6.5E-208 T 22-04-2016 PP4_RS07815 6af6bbf4df9505f7bebfedbfa3104e02 943 PANTHER PTHR11908:SF71 117 189 6.5E-208 T 22-04-2016 PP4_RS07815 6af6bbf4df9505f7bebfedbfa3104e02 943 PANTHER PTHR11908:SF71 757 942 6.5E-208 T 22-04-2016 PP4_RS07815 6af6bbf4df9505f7bebfedbfa3104e02 943 PANTHER PTHR11908:SF71 247 610 6.5E-208 T 22-04-2016 PP4_RS07815 6af6bbf4df9505f7bebfedbfa3104e02 943 Gene3D G3DSA:3.30.365.10 554 717 5.1E-21 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS07815 6af6bbf4df9505f7bebfedbfa3104e02 943 Gene3D G3DSA:3.30.365.10 791 807 5.1E-21 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS07815 6af6bbf4df9505f7bebfedbfa3104e02 943 SUPERFAMILY SSF54665 52 174 4.19E-13 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead PP4_RS07815 6af6bbf4df9505f7bebfedbfa3104e02 943 Gene3D G3DSA:3.30.365.10 264 372 6.8E-13 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS07815 6af6bbf4df9505f7bebfedbfa3104e02 943 Gene3D G3DSA:3.30.365.10 375 451 3.6E-8 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS07815 6af6bbf4df9505f7bebfedbfa3104e02 943 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 708 881 2.5E-18 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS07815 6af6bbf4df9505f7bebfedbfa3104e02 943 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 265 601 4.0E-52 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS07815 6af6bbf4df9505f7bebfedbfa3104e02 943 Gene3D G3DSA:3.90.1170.50 36 173 1.6E-4 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead PP4_RS07815 6af6bbf4df9505f7bebfedbfa3104e02 943 SUPERFAMILY SSF56003 797 942 1.7E-118 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS07815 6af6bbf4df9505f7bebfedbfa3104e02 943 SUPERFAMILY SSF56003 638 742 1.7E-118 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS07815 6af6bbf4df9505f7bebfedbfa3104e02 943 SUPERFAMILY SSF56003 264 610 1.7E-118 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS07815 6af6bbf4df9505f7bebfedbfa3104e02 943 PANTHER PTHR11908 638 682 6.5E-208 T 22-04-2016 PP4_RS07815 6af6bbf4df9505f7bebfedbfa3104e02 943 PANTHER PTHR11908 117 189 6.5E-208 T 22-04-2016 PP4_RS07815 6af6bbf4df9505f7bebfedbfa3104e02 943 PANTHER PTHR11908 757 942 6.5E-208 T 22-04-2016 PP4_RS07815 6af6bbf4df9505f7bebfedbfa3104e02 943 PANTHER PTHR11908 247 610 6.5E-208 T 22-04-2016 PP4_RS15805 ef541f68ed0f098de5a69876c7cae08f 480 Gene3D G3DSA:3.40.309.10 264 451 1.4E-61 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PP4_RS15805 ef541f68ed0f098de5a69876c7cae08f 480 PANTHER PTHR11699:SF200 5 480 5.3E-234 T 22-04-2016 PP4_RS15805 ef541f68ed0f098de5a69876c7cae08f 480 SUPERFAMILY SSF53720 3 479 1.44E-157 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS15805 ef541f68ed0f098de5a69876c7cae08f 480 Gene3D G3DSA:3.40.605.10 5 263 2.6E-88 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS15805 ef541f68ed0f098de5a69876c7cae08f 480 Pfam PF00171 Aldehyde dehydrogenase family 18 475 2.3E-157 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PP4_RS15805 ef541f68ed0f098de5a69876c7cae08f 480 PANTHER PTHR11699 5 480 5.3E-234 T 22-04-2016 PP4_RS00390 99c1f94722edff3818fd64fdd55976cb 73 ProDom PD336997 PRECURSOR SIGNAL MEMBRANE OUTER YNFD ESCHERICHIA EXPORTED PP0087 COLI PP0090 1 73 6.0E-22 T 22-04-2016 IPR010595 Protein of unknown function DUF1161 PP4_RS00390 99c1f94722edff3818fd64fdd55976cb 73 Pfam PF06649 Protein of unknown function (DUF1161) 24 72 4.2E-21 T 22-04-2016 IPR010595 Protein of unknown function DUF1161 PP4_RS07065 0e402367ac6061ffc7bed5100d8a33b6 680 PANTHER PTHR30033:SF1 545 680 9.1E-103 T 22-04-2016 PP4_RS07065 0e402367ac6061ffc7bed5100d8a33b6 680 PANTHER PTHR30033:SF1 1 503 9.1E-103 T 22-04-2016 PP4_RS07065 0e402367ac6061ffc7bed5100d8a33b6 680 PRINTS PR01005 Flagellar hook-associated protein signature 123 143 3.7E-14 T 22-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 PP4_RS07065 0e402367ac6061ffc7bed5100d8a33b6 680 PRINTS PR01005 Flagellar hook-associated protein signature 49 71 3.7E-14 T 22-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 PP4_RS07065 0e402367ac6061ffc7bed5100d8a33b6 680 PRINTS PR01005 Flagellar hook-associated protein signature 156 180 3.7E-14 T 22-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 PP4_RS07065 0e402367ac6061ffc7bed5100d8a33b6 680 PRINTS PR01005 Flagellar hook-associated protein signature 11 34 3.7E-14 T 22-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 PP4_RS07065 0e402367ac6061ffc7bed5100d8a33b6 680 PRINTS PR01005 Flagellar hook-associated protein signature 362 384 3.7E-14 T 22-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 PP4_RS07065 0e402367ac6061ffc7bed5100d8a33b6 680 SUPERFAMILY SSF64518 493 680 2.48E-19 T 22-04-2016 PP4_RS07065 0e402367ac6061ffc7bed5100d8a33b6 680 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 622 678 1.2E-7 T 22-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain PP4_RS07065 0e402367ac6061ffc7bed5100d8a33b6 680 SUPERFAMILY SSF64518 134 467 8.89E-18 T 22-04-2016 PP4_RS07065 0e402367ac6061ffc7bed5100d8a33b6 680 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 22-04-2016 IPR019776 Flagellar basal body rod protein, conserved site PP4_RS07065 0e402367ac6061ffc7bed5100d8a33b6 680 PANTHER PTHR30033 545 680 9.1E-103 T 22-04-2016 PP4_RS07065 0e402367ac6061ffc7bed5100d8a33b6 680 PANTHER PTHR30033 1 503 9.1E-103 T 22-04-2016 PP4_RS07065 0e402367ac6061ffc7bed5100d8a33b6 680 TIGRFAM TIGR02492 flgK_ends: flagellar hook-associated protein FlgK 4 349 2.8E-70 T 22-04-2016 IPR002371 Flagellar hook-associated protein 1 GO:0005198|GO:0009424|GO:0044780 PP4_RS07065 0e402367ac6061ffc7bed5100d8a33b6 680 Pfam PF00460 Flagella basal body rod protein 5 34 2.0E-8 T 22-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 PP4_RS07580 446b57d8efd21251ca5f817ebf21ec6c 251 Gene3D G3DSA:1.20.120.530 88 223 2.0E-32 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PP4_RS07580 446b57d8efd21251ca5f817ebf21ec6c 251 SMART SM00895 95 218 1.0E-21 T 22-04-2016 IPR011711 GntR, C-terminal PP4_RS07580 446b57d8efd21251ca5f817ebf21ec6c 251 SUPERFAMILY SSF46785 24 89 1.64E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS07580 446b57d8efd21251ca5f817ebf21ec6c 251 SMART SM00345 27 85 7.3E-17 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS07580 446b57d8efd21251ca5f817ebf21ec6c 251 PANTHER PTHR11751 24 111 2.8E-22 T 22-04-2016 PP4_RS07580 446b57d8efd21251ca5f817ebf21ec6c 251 Gene3D G3DSA:1.10.10.10 14 86 2.0E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS07580 446b57d8efd21251ca5f817ebf21ec6c 251 Pfam PF07729 FCD domain 96 217 9.7E-23 T 22-04-2016 IPR011711 GntR, C-terminal PP4_RS07580 446b57d8efd21251ca5f817ebf21ec6c 251 Pfam PF00392 Bacterial regulatory proteins, gntR family 27 85 4.5E-17 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS07580 446b57d8efd21251ca5f817ebf21ec6c 251 SUPERFAMILY SSF48008 90 219 1.33E-27 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PP4_RS02450 f6a1be9785c0a0520c2b795ce354df02 143 PANTHER PTHR11661 1 142 1.2E-70 T 22-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 PP4_RS02450 f6a1be9785c0a0520c2b795ce354df02 143 SUPERFAMILY SSF46906 68 141 1.03E-22 T 22-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 PP4_RS02450 f6a1be9785c0a0520c2b795ce354df02 143 Gene3D G3DSA:3.30.1550.10 2 72 3.3E-38 T 22-04-2016 IPR020784 Ribosomal protein L11, N-terminal PP4_RS02450 f6a1be9785c0a0520c2b795ce354df02 143 SUPERFAMILY SSF54747 3 72 9.42E-30 T 22-04-2016 IPR020784 Ribosomal protein L11, N-terminal PP4_RS02450 f6a1be9785c0a0520c2b795ce354df02 143 Pfam PF00298 Ribosomal protein L11, RNA binding domain 72 140 1.4E-21 T 22-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 PP4_RS02450 f6a1be9785c0a0520c2b795ce354df02 143 SMART SM00649 9 141 2.1E-81 T 22-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 PP4_RS02450 f6a1be9785c0a0520c2b795ce354df02 143 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 142 30.263 T 22-04-2016 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 PP4_RS02450 f6a1be9785c0a0520c2b795ce354df02 143 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 72 6.0E-16 T 22-04-2016 PP4_RS02450 f6a1be9785c0a0520c2b795ce354df02 143 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 67 4.0E-29 T 22-04-2016 IPR020784 Ribosomal protein L11, N-terminal PP4_RS02450 f6a1be9785c0a0520c2b795ce354df02 143 Gene3D G3DSA:1.10.10.250 73 141 1.5E-28 T 22-04-2016 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 PP4_RS02450 f6a1be9785c0a0520c2b795ce354df02 143 ProSitePatterns PS00359 Ribosomal protein L11 signature. 127 142 - T 22-04-2016 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 PP4_RS02450 f6a1be9785c0a0520c2b795ce354df02 143 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 141 8.5E-64 T 22-04-2016 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 PP4_RS13240 2e919c1989eb17dc68534e99bb36b33b 405 TIGRFAM TIGR00937 2A51: chromate efflux transporter 22 398 3.1E-102 T 22-04-2016 IPR014047 Chromate transporter, long chain PP4_RS13240 2e919c1989eb17dc68534e99bb36b33b 405 PANTHER PTHR33567:SF3 10 398 1.8E-134 T 22-04-2016 PP4_RS13240 2e919c1989eb17dc68534e99bb36b33b 405 PIRSF PIRSF004810 2 404 7.4E-126 T 22-04-2016 IPR014047 Chromate transporter, long chain PP4_RS13240 2e919c1989eb17dc68534e99bb36b33b 405 Pfam PF02417 Chromate transporter 232 399 2.2E-36 T 22-04-2016 IPR003370 Chromate transporter GO:0015109|GO:0015703 PP4_RS13240 2e919c1989eb17dc68534e99bb36b33b 405 Pfam PF02417 Chromate transporter 16 181 1.7E-31 T 22-04-2016 IPR003370 Chromate transporter GO:0015109|GO:0015703 PP4_RS13240 2e919c1989eb17dc68534e99bb36b33b 405 PANTHER PTHR33567 10 398 1.8E-134 T 22-04-2016 PP4_RS21935 93e0a50896cf9c0a201e0adef2316d1e 497 Pfam PF00309 Sigma-54 factor, Activator interacting domain (AID) 5 48 5.3E-17 T 22-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 PP4_RS21935 93e0a50896cf9c0a201e0adef2316d1e 497 TIGRFAM TIGR02395 rpoN_sigma: RNA polymerase sigma-54 factor 10 494 1.8E-156 T 22-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 PP4_RS21935 93e0a50896cf9c0a201e0adef2316d1e 497 PANTHER PTHR32248 1 497 3.5E-175 T 22-04-2016 PP4_RS21935 93e0a50896cf9c0a201e0adef2316d1e 497 Pfam PF04552 Sigma-54, DNA binding domain 337 495 2.5E-72 T 22-04-2016 IPR007634 RNA polymerase sigma factor 54, DNA-binding PP4_RS21935 93e0a50896cf9c0a201e0adef2316d1e 497 PRINTS PR00045 Sigma-54 factor signature 412 423 3.0E-32 T 22-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 PP4_RS21935 93e0a50896cf9c0a201e0adef2316d1e 497 PRINTS PR00045 Sigma-54 factor signature 470 488 3.0E-32 T 22-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 PP4_RS21935 93e0a50896cf9c0a201e0adef2316d1e 497 PRINTS PR00045 Sigma-54 factor signature 396 408 3.0E-32 T 22-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 PP4_RS21935 93e0a50896cf9c0a201e0adef2316d1e 497 PRINTS PR00045 Sigma-54 factor signature 206 223 3.0E-32 T 22-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 PP4_RS21935 93e0a50896cf9c0a201e0adef2316d1e 497 Pfam PF04963 Sigma-54 factor, core binding domain 130 323 1.0E-62 T 22-04-2016 IPR007046 RNA polymerase sigma factor 54, core-binding GO:0003677|GO:0006352 PP4_RS21935 93e0a50896cf9c0a201e0adef2316d1e 497 ProSitePatterns PS00717 Sigma-54 factors family signature 1. 384 403 - T 22-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 PP4_RS21935 93e0a50896cf9c0a201e0adef2316d1e 497 PANTHER PTHR32248:SF4 1 497 3.5E-175 T 22-04-2016 PP4_RS21935 93e0a50896cf9c0a201e0adef2316d1e 497 ProSitePatterns PS00718 Sigma-54 factors family signature 2. 475 482 - T 22-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 PP4_RS21935 93e0a50896cf9c0a201e0adef2316d1e 497 PIRSF PIRSF000774 1 497 3.4E-158 T 22-04-2016 IPR000394 RNA polymerase sigma factor 54 GO:0003677|GO:0003700|GO:0003899|GO:0006352|GO:0006355|GO:0016987 PP4_RS01120 947420feabf65356f81c301005a52fe4 81 Pfam PF13187 4Fe-4S dicluster domain 28 71 4.0E-8 T 22-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PP4_RS01120 947420feabf65356f81c301005a52fe4 81 SUPERFAMILY SSF54862 9 74 1.88E-14 T 22-04-2016 PP4_RS01120 947420feabf65356f81c301005a52fe4 81 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 57 68 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PP4_RS01120 947420feabf65356f81c301005a52fe4 81 Gene3D G3DSA:3.30.70.20 16 74 5.6E-16 T 22-04-2016 PP4_RS14540 112f8e735bd4360a6ab4175aa0049e2b 445 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 1 417 1.2E-131 T 22-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 PP4_RS14540 112f8e735bd4360a6ab4175aa0049e2b 445 SUPERFAMILY SSF48179 201 298 5.78E-32 T 22-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PP4_RS14540 112f8e735bd4360a6ab4175aa0049e2b 445 PANTHER PTHR11374:SF18 1 441 3.2E-232 T 22-04-2016 PP4_RS14540 112f8e735bd4360a6ab4175aa0049e2b 445 PANTHER PTHR11374 1 441 3.2E-232 T 22-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 PP4_RS14540 112f8e735bd4360a6ab4175aa0049e2b 445 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 201 293 3.6E-37 T 22-04-2016 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 PP4_RS14540 112f8e735bd4360a6ab4175aa0049e2b 445 SMART SM00984 317 421 1.7E-43 T 22-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 PP4_RS14540 112f8e735bd4360a6ab4175aa0049e2b 445 Gene3D G3DSA:1.20.5.100 205 230 3.7E-18 T 22-04-2016 PP4_RS14540 112f8e735bd4360a6ab4175aa0049e2b 445 SUPERFAMILY SSF51735 1 190 4.6E-50 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS14540 112f8e735bd4360a6ab4175aa0049e2b 445 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 317 420 1.9E-26 T 22-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 PP4_RS14540 112f8e735bd4360a6ab4175aa0049e2b 445 Gene3D G3DSA:3.40.50.720 1 204 7.8E-73 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS14540 112f8e735bd4360a6ab4175aa0049e2b 445 PIRSF PIRSF000124 1 436 2.2E-142 T 22-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 PP4_RS14540 112f8e735bd4360a6ab4175aa0049e2b 445 Gene3D G3DSA:3.40.50.720 232 440 7.6E-66 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS14540 112f8e735bd4360a6ab4175aa0049e2b 445 PIRSF PIRSF500134 1 439 1.6E-174 T 22-04-2016 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type GO:0000271|GO:0003979 KEGG: 00040+1.1.1.22|KEGG: 00053+1.1.1.22|KEGG: 00500+1.1.1.22|KEGG: 00520+1.1.1.22|MetaCyc: PWY-7346|UniPathway: UPA00038 PP4_RS14540 112f8e735bd4360a6ab4175aa0049e2b 445 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 1 184 2.3E-61 T 22-04-2016 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 PP4_RS14540 112f8e735bd4360a6ab4175aa0049e2b 445 SUPERFAMILY SSF52413 306 432 2.09E-35 T 22-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 PP4_RS20675 7ed68315331a2b48b609cfa9b1d07ad0 177 PANTHER PTHR21666 32 168 2.2E-39 T 22-04-2016 PP4_RS20675 7ed68315331a2b48b609cfa9b1d07ad0 177 Gene3D G3DSA:3.90.1720.10 39 169 3.5E-44 T 22-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PP4_RS20675 7ed68315331a2b48b609cfa9b1d07ad0 177 Pfam PF00877 NlpC/P60 family 57 166 2.0E-30 T 22-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PP4_RS20675 7ed68315331a2b48b609cfa9b1d07ad0 177 SUPERFAMILY SSF54001 39 168 5.23E-41 T 22-04-2016 PP4_RS04520 3cbe71cd54e7c90bb69f1f6b13e8370d 317 Pfam PF02371 Transposase IS116/IS110/IS902 family 194 267 2.0E-17 T 22-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PP4_RS04520 3cbe71cd54e7c90bb69f1f6b13e8370d 317 PANTHER PTHR33055 7 308 1.1E-34 T 22-04-2016 PP4_RS04520 3cbe71cd54e7c90bb69f1f6b13e8370d 317 Pfam PF01548 Transposase 10 148 8.8E-21 T 22-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 PP4_RS04520 3cbe71cd54e7c90bb69f1f6b13e8370d 317 PANTHER PTHR33055:SF3 7 308 1.1E-34 T 22-04-2016 PP4_RS05300 3cbe71cd54e7c90bb69f1f6b13e8370d 317 Pfam PF02371 Transposase IS116/IS110/IS902 family 194 267 2.0E-17 T 22-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PP4_RS05300 3cbe71cd54e7c90bb69f1f6b13e8370d 317 PANTHER PTHR33055 7 308 1.1E-34 T 22-04-2016 PP4_RS05300 3cbe71cd54e7c90bb69f1f6b13e8370d 317 Pfam PF01548 Transposase 10 148 8.8E-21 T 22-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 PP4_RS05300 3cbe71cd54e7c90bb69f1f6b13e8370d 317 PANTHER PTHR33055:SF3 7 308 1.1E-34 T 22-04-2016 PP4_RS25425 3cbe71cd54e7c90bb69f1f6b13e8370d 317 Pfam PF02371 Transposase IS116/IS110/IS902 family 194 267 2.0E-17 T 22-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PP4_RS25425 3cbe71cd54e7c90bb69f1f6b13e8370d 317 PANTHER PTHR33055 7 308 1.1E-34 T 22-04-2016 PP4_RS25425 3cbe71cd54e7c90bb69f1f6b13e8370d 317 Pfam PF01548 Transposase 10 148 8.8E-21 T 22-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 PP4_RS25425 3cbe71cd54e7c90bb69f1f6b13e8370d 317 PANTHER PTHR33055:SF3 7 308 1.1E-34 T 22-04-2016 PP4_RS01835 3cbe71cd54e7c90bb69f1f6b13e8370d 317 Pfam PF02371 Transposase IS116/IS110/IS902 family 194 267 2.0E-17 T 22-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PP4_RS01835 3cbe71cd54e7c90bb69f1f6b13e8370d 317 PANTHER PTHR33055 7 308 1.1E-34 T 22-04-2016 PP4_RS01835 3cbe71cd54e7c90bb69f1f6b13e8370d 317 Pfam PF01548 Transposase 10 148 8.8E-21 T 22-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 PP4_RS01835 3cbe71cd54e7c90bb69f1f6b13e8370d 317 PANTHER PTHR33055:SF3 7 308 1.1E-34 T 22-04-2016 PP4_RS08240 c148aea0587b91d1ea322164296ca44e 252 SMART SM00479 8 182 7.5E-46 T 22-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III PP4_RS08240 c148aea0587b91d1ea322164296ca44e 252 Pfam PF00929 Exonuclease 10 173 2.7E-37 T 22-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III PP4_RS08240 c148aea0587b91d1ea322164296ca44e 252 TIGRFAM TIGR01406 dnaQ_proteo: DNA polymerase III, epsilon subunit 8 244 6.6E-87 T 22-04-2016 IPR006309 DNA polymerase 3, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS08240 c148aea0587b91d1ea322164296ca44e 252 PANTHER PTHR30231:SF0 8 249 2.5E-108 T 22-04-2016 PP4_RS08240 c148aea0587b91d1ea322164296ca44e 252 SUPERFAMILY SSF53098 6 183 3.36E-54 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PP4_RS08240 c148aea0587b91d1ea322164296ca44e 252 TIGRFAM TIGR00573 dnaq: exonuclease, DNA polymerase III, epsilon subunit family 6 223 1.9E-63 T 22-04-2016 IPR006054 DNA polymerase III, epsilon subunit GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS08240 c148aea0587b91d1ea322164296ca44e 252 PANTHER PTHR30231 8 249 2.5E-108 T 22-04-2016 PP4_RS08240 c148aea0587b91d1ea322164296ca44e 252 Gene3D G3DSA:3.30.420.10 5 183 7.9E-62 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PP4_RS10720 4c2f068f300c0ab147630c05463ef68b 363 TIGRFAM TIGR02089 TTC: tartrate dehydrogenase 3 359 1.2E-170 T 22-04-2016 IPR011829 Tartrate dehydrogenase GO:0016616|GO:0051287|GO:0055114 KEGG: 00630+1.1.1.93|KEGG: 00650+1.1.1.83 PP4_RS10720 4c2f068f300c0ab147630c05463ef68b 363 SUPERFAMILY SSF53659 2 360 3.65E-116 T 22-04-2016 PP4_RS10720 4c2f068f300c0ab147630c05463ef68b 363 PANTHER PTHR11835 1 362 1.9E-226 T 22-04-2016 IPR001804 Isocitrate and isopropylmalate dehydrogenases family GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 PP4_RS10720 4c2f068f300c0ab147630c05463ef68b 363 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 244 263 - T 22-04-2016 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 PP4_RS10720 4c2f068f300c0ab147630c05463ef68b 363 SMART SM01329 6 357 6.7E-181 T 22-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 PP4_RS10720 4c2f068f300c0ab147630c05463ef68b 363 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 7 357 1.1E-84 T 22-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 PP4_RS10720 4c2f068f300c0ab147630c05463ef68b 363 PANTHER PTHR11835:SF37 1 362 1.9E-226 T 22-04-2016 PP4_RS10720 4c2f068f300c0ab147630c05463ef68b 363 Gene3D G3DSA:3.40.718.10 5 351 2.9E-117 T 22-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 PP4_RS21125 2d9bcdcbc18e4ff57dd52ef38231a615 828 SMART SM00563 304 431 1.2E-25 T 22-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 PP4_RS21125 2d9bcdcbc18e4ff57dd52ef38231a615 828 TIGRFAM TIGR03703 plsB: glycerol-3-phosphate O-acyltransferase 14 812 0.0 T 22-04-2016 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00557 PP4_RS21125 2d9bcdcbc18e4ff57dd52ef38231a615 828 PANTHER PTHR12563 1 130 0.0 T 22-04-2016 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase GO:0008374|GO:0044255 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00557 PP4_RS21125 2d9bcdcbc18e4ff57dd52ef38231a615 828 PANTHER PTHR12563 149 823 0.0 T 22-04-2016 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase GO:0008374|GO:0044255 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00557 PP4_RS21125 2d9bcdcbc18e4ff57dd52ef38231a615 828 PIRSF PIRSF500064 4 825 0.0 T 22-04-2016 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00557 PP4_RS21125 2d9bcdcbc18e4ff57dd52ef38231a615 828 PANTHER PTHR12563:SF14 1 130 0.0 T 22-04-2016 PP4_RS21125 2d9bcdcbc18e4ff57dd52ef38231a615 828 PANTHER PTHR12563:SF14 149 823 0.0 T 22-04-2016 PP4_RS21125 2d9bcdcbc18e4ff57dd52ef38231a615 828 SUPERFAMILY SSF69593 241 530 9.15E-35 T 22-04-2016 PP4_RS21125 2d9bcdcbc18e4ff57dd52ef38231a615 828 Hamap MF_00393 Glycerol-3-phosphate acyltransferase [plsB]. 15 816 29.8 T 22-04-2016 IPR028354 Glycerol-3-phosphate acyltransferase, PlsB GO:0004366|GO:0005886|GO:0008654 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00557 PP4_RS21125 2d9bcdcbc18e4ff57dd52ef38231a615 828 Pfam PF01553 Acyltransferase 294 428 2.9E-20 T 22-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 PP4_RS21125 2d9bcdcbc18e4ff57dd52ef38231a615 828 PIRSF PIRSF000437 21 824 4.3E-293 T 22-04-2016 IPR022284 Glycerol-3-phosphate O-acyltransferase/Dihydroxyacetone phosphate acyltransferase GO:0008374|GO:0044255 KEGG: 00561+2.3.1.15|KEGG: 00564+2.3.1.15|MetaCyc: PWY-5667|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7587|UniPathway: UPA00557 PP4_RS18900 abea8bf1aa04184a9c479f0c9d76d2c6 556 Pfam PF00069 Protein kinase domain 281 460 1.8E-29 T 22-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 PP4_RS18900 abea8bf1aa04184a9c479f0c9d76d2c6 556 PANTHER PTHR24348:SF23 302 513 4.3E-98 T 22-04-2016 PP4_RS18900 abea8bf1aa04184a9c479f0c9d76d2c6 556 Gene3D G3DSA:3.60.40.10 2 228 3.1E-45 T 22-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 PP4_RS18900 abea8bf1aa04184a9c479f0c9d76d2c6 556 Pfam PF13672 Protein phosphatase 2C 16 187 6.2E-9 T 22-04-2016 PP4_RS18900 abea8bf1aa04184a9c479f0c9d76d2c6 556 SUPERFAMILY SSF56112 257 511 9.98E-50 T 22-04-2016 IPR011009 Protein kinase-like domain PP4_RS18900 abea8bf1aa04184a9c479f0c9d76d2c6 556 SMART SM00332 2 226 2.7E-5 T 22-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 PP4_RS18900 abea8bf1aa04184a9c479f0c9d76d2c6 556 SMART SM00220 261 509 2.6E-13 T 22-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 PP4_RS18900 abea8bf1aa04184a9c479f0c9d76d2c6 556 SMART SM00331 22 228 4.0E-9 T 22-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 PP4_RS18900 abea8bf1aa04184a9c479f0c9d76d2c6 556 Gene3D G3DSA:1.10.510.10 322 520 4.4E-38 T 22-04-2016 PP4_RS18900 abea8bf1aa04184a9c479f0c9d76d2c6 556 SUPERFAMILY SSF81606 4 229 9.42E-46 T 22-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 PP4_RS18900 abea8bf1aa04184a9c479f0c9d76d2c6 556 PANTHER PTHR24348 302 513 4.3E-98 T 22-04-2016 PP4_RS26070 40dbd5ccdf225a03e39adc7a771d4034 284 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 252 278 - T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS26070 40dbd5ccdf225a03e39adc7a771d4034 284 Pfam PF04545 Sigma-70, region 4 229 279 2.4E-15 T 22-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS26070 40dbd5ccdf225a03e39adc7a771d4034 284 Hamap MF_00961 RNA polymerase sigma factor RpoH [rpoH]. 2 284 53.306 T 22-04-2016 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 PP4_RS26070 40dbd5ccdf225a03e39adc7a771d4034 284 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 49 279 4.4E-31 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS26070 40dbd5ccdf225a03e39adc7a771d4034 284 Gene3D G3DSA:1.10.10.10 225 280 3.7E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS26070 40dbd5ccdf225a03e39adc7a771d4034 284 SUPERFAMILY SSF88659 197 282 5.61E-17 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS26070 40dbd5ccdf225a03e39adc7a771d4034 284 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 78 91 - T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS26070 40dbd5ccdf225a03e39adc7a771d4034 284 PANTHER PTHR30376 3 282 1.4E-115 T 22-04-2016 PP4_RS26070 40dbd5ccdf225a03e39adc7a771d4034 284 Pfam PF04542 Sigma-70 region 2 54 123 1.0E-16 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS26070 40dbd5ccdf225a03e39adc7a771d4034 284 SUPERFAMILY SSF88946 15 123 2.09E-38 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS26070 40dbd5ccdf225a03e39adc7a771d4034 284 Gene3D G3DSA:1.10.601.10 16 123 1.6E-34 T 22-04-2016 PP4_RS26070 40dbd5ccdf225a03e39adc7a771d4034 284 TIGRFAM TIGR02392 rpoH_proteo: alternative sigma factor RpoH 16 282 4.3E-124 T 22-04-2016 IPR012759 RNA polymerase sigma factor RpoH, proteobacteria GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0008270|GO:0009408|GO:0016987 PP4_RS26070 40dbd5ccdf225a03e39adc7a771d4034 284 PRINTS PR00046 Major sigma-70 factor signature 233 245 1.4E-16 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS26070 40dbd5ccdf225a03e39adc7a771d4034 284 PRINTS PR00046 Major sigma-70 factor signature 267 278 1.4E-16 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS26070 40dbd5ccdf225a03e39adc7a771d4034 284 PRINTS PR00046 Major sigma-70 factor signature 252 267 1.4E-16 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS26070 40dbd5ccdf225a03e39adc7a771d4034 284 PRINTS PR00046 Major sigma-70 factor signature 78 91 1.4E-16 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS04695 0f91c9d897911bc07a05dfd1439a9928 291 Gene3D G3DSA:3.30.450.40 111 289 4.1E-56 T 22-04-2016 IPR029016 GAF domain-like PP4_RS04695 0f91c9d897911bc07a05dfd1439a9928 291 SUPERFAMILY SSF46785 46 117 5.72E-11 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS04695 0f91c9d897911bc07a05dfd1439a9928 291 PANTHER PTHR30136 22 289 1.4E-103 T 22-04-2016 PP4_RS04695 0f91c9d897911bc07a05dfd1439a9928 291 Gene3D G3DSA:1.10.10.10 33 103 1.5E-30 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS04695 0f91c9d897911bc07a05dfd1439a9928 291 Pfam PF01614 Bacterial transcriptional regulator 162 287 6.9E-43 T 22-04-2016 IPR014757 Transcription regulator IclR, C-terminal PP4_RS04695 0f91c9d897911bc07a05dfd1439a9928 291 SUPERFAMILY SSF55781 110 289 2.68E-47 T 22-04-2016 IPR029016 GAF domain-like PP4_RS04695 0f91c9d897911bc07a05dfd1439a9928 291 Pfam PF09339 IclR helix-turn-helix domain 47 98 3.5E-14 T 22-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 PP4_RS04695 0f91c9d897911bc07a05dfd1439a9928 291 TIGRFAM TIGR02431 pcaR_pcaU: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family 42 289 1.3E-107 T 22-04-2016 IPR012794 Beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR GO:0003677|GO:0045893|GO:0046278 PP4_RS04695 0f91c9d897911bc07a05dfd1439a9928 291 PANTHER PTHR30136:SF10 22 289 1.4E-103 T 22-04-2016 PP4_RS04695 0f91c9d897911bc07a05dfd1439a9928 291 SMART SM00346 45 133 3.6E-34 T 22-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 PP4_RS11700 4ac06b97a543455423e7dafeade1ed76 278 PANTHER PTHR34571:SF1 6 272 4.9E-80 T 22-04-2016 PP4_RS11700 4ac06b97a543455423e7dafeade1ed76 278 Gene3D G3DSA:2.60.120.10 6 271 7.2E-110 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS11700 4ac06b97a543455423e7dafeade1ed76 278 Pfam PF07883 Cupin domain 72 140 2.7E-9 T 22-04-2016 IPR013096 Cupin 2, conserved barrel PP4_RS11700 4ac06b97a543455423e7dafeade1ed76 278 Pfam PF07883 Cupin domain 195 247 5.5E-8 T 22-04-2016 IPR013096 Cupin 2, conserved barrel PP4_RS11700 4ac06b97a543455423e7dafeade1ed76 278 SUPERFAMILY SSF51182 10 272 8.16E-82 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS11700 4ac06b97a543455423e7dafeade1ed76 278 TIGRFAM TIGR03214 ura-cupin: putative allantoin catabolism protein 6 272 1.1E-116 T 22-04-2016 IPR017627 Conserved hypothetical protein CHP03214, putative allantoin-urate catabolism protein KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 PP4_RS11700 4ac06b97a543455423e7dafeade1ed76 278 PANTHER PTHR34571 6 272 4.9E-80 T 22-04-2016 PP4_RS25910 bd321522fb38aad4edae9c263ec5c272 1481 Gene3D G3DSA:3.20.20.70 808 1187 6.7E-163 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS25910 bd321522fb38aad4edae9c263ec5c272 1481 Pfam PF00310 Glutamine amidotransferases class-II 15 428 2.2E-169 T 22-04-2016 IPR017932 Glutamine amidotransferase type 2 domain PP4_RS25910 bd321522fb38aad4edae9c263ec5c272 1481 PANTHER PTHR11938 4 1478 0.0 T 22-04-2016 PP4_RS25910 bd321522fb38aad4edae9c263ec5c272 1481 Gene3D G3DSA:2.160.20.60 1212 1467 5.6E-94 T 22-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 PP4_RS25910 bd321522fb38aad4edae9c263ec5c272 1481 Pfam PF01493 GXGXG motif 1236 1422 6.4E-78 T 22-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 PP4_RS25910 bd321522fb38aad4edae9c263ec5c272 1481 Pfam PF01645 Conserved region in glutamate synthase 792 1156 1.7E-149 T 22-04-2016 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 PP4_RS25910 bd321522fb38aad4edae9c263ec5c272 1481 Pfam PF04898 Glutamate synthase central domain 457 735 9.3E-103 T 22-04-2016 IPR006982 Glutamate synthase, central-N GO:0006807|GO:0015930|GO:0055114 UniPathway: UPA00045 PP4_RS25910 bd321522fb38aad4edae9c263ec5c272 1481 SUPERFAMILY SSF51395 443 1187 3.46E-250 T 22-04-2016 PP4_RS25910 bd321522fb38aad4edae9c263ec5c272 1481 Gene3D G3DSA:3.60.20.10 15 437 1.2E-161 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PP4_RS25910 bd321522fb38aad4edae9c263ec5c272 1481 SUPERFAMILY SSF56235 15 431 1.97E-140 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PP4_RS25910 bd321522fb38aad4edae9c263ec5c272 1481 Gene3D G3DSA:3.20.20.70 441 776 4.7E-94 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS25910 bd321522fb38aad4edae9c263ec5c272 1481 SUPERFAMILY SSF69336 1213 1466 9.16E-89 T 22-04-2016 IPR002489 Glutamate synthase, alpha subunit, C-terminal GO:0008152|GO:0016491|GO:0055114 PP4_RS25910 bd321522fb38aad4edae9c263ec5c272 1481 PANTHER PTHR11938:SF1 4 1478 0.0 T 22-04-2016 PP4_RS19585 f10ec99fae9b4f297f113cc870277198 211 PANTHER PTHR30625 1 196 3.9E-56 T 22-04-2016 PP4_RS19585 f10ec99fae9b4f297f113cc870277198 211 Pfam PF01618 MotA/TolQ/ExbB proton channel family 67 188 2.7E-34 T 22-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 PP4_RS19585 f10ec99fae9b4f297f113cc870277198 211 PANTHER PTHR30625:SF0 1 196 3.9E-56 T 22-04-2016 PP4_RS10230 bbdeca19a725286631c011c26640bb5c 78 Pfam PF14657 AP2-like DNA-binding integrase domain 26 65 3.8E-5 T 22-04-2016 IPR028259 AP2-like integrase, N-terminal domain PP4_RS25360 422c75c88bd6eac942d8748c7e059b77 330 Gene3D G3DSA:3.40.50.150 149 300 7.9E-28 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS25360 422c75c88bd6eac942d8748c7e059b77 330 SUPERFAMILY SSF46785 9 203 1.04E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS25360 422c75c88bd6eac942d8748c7e059b77 330 SMART SM00418 17 98 2.6E-9 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 PP4_RS25360 422c75c88bd6eac942d8748c7e059b77 330 Gene3D G3DSA:1.10.10.10 9 85 4.4E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS25360 422c75c88bd6eac942d8748c7e059b77 330 Pfam PF13489 Methyltransferase domain 150 283 3.4E-16 T 22-04-2016 PP4_RS25360 422c75c88bd6eac942d8748c7e059b77 330 SUPERFAMILY SSF53335 156 310 2.89E-32 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS25360 422c75c88bd6eac942d8748c7e059b77 330 PANTHER PTHR10108:SF820 38 299 8.3E-35 T 22-04-2016 PP4_RS25360 422c75c88bd6eac942d8748c7e059b77 330 Pfam PF12840 Helix-turn-helix domain 18 74 3.2E-11 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS25360 422c75c88bd6eac942d8748c7e059b77 330 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 19 34 1.8E-7 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 PP4_RS25360 422c75c88bd6eac942d8748c7e059b77 330 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 66 81 1.8E-7 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 PP4_RS25360 422c75c88bd6eac942d8748c7e059b77 330 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 51 66 1.8E-7 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 PP4_RS25360 422c75c88bd6eac942d8748c7e059b77 330 PANTHER PTHR10108 38 299 8.3E-35 T 22-04-2016 PP4_RS08600 dfc0daa79fc289d3c384e9693bb93851 171 Pfam PF08281 Sigma-70, region 4 22 71 6.6E-9 T 22-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS08600 dfc0daa79fc289d3c384e9693bb93851 171 Gene3D G3DSA:1.10.10.10 16 72 1.6E-9 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS08600 dfc0daa79fc289d3c384e9693bb93851 171 Pfam PF16220 Domain of unknown function (DUF4880) 84 122 2.9E-11 T 22-04-2016 IPR032623 FecR, N-terminal PP4_RS08600 dfc0daa79fc289d3c384e9693bb93851 171 SUPERFAMILY SSF88659 18 71 4.8E-8 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS27240 2bc1c17c3c8e6a5b553ae5c413985827 471 Pfam PF02785 Biotin carboxylase C-terminal domain 334 440 5.1E-40 T 22-04-2016 IPR005482 Biotin carboxylase, C-terminal PP4_RS27240 2bc1c17c3c8e6a5b553ae5c413985827 471 SMART SM00878 334 440 3.9E-59 T 22-04-2016 IPR005482 Biotin carboxylase, C-terminal PP4_RS27240 2bc1c17c3c8e6a5b553ae5c413985827 471 PANTHER PTHR18866:SF111 1 468 0.0 T 22-04-2016 PP4_RS27240 2bc1c17c3c8e6a5b553ae5c413985827 471 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1. 152 166 - T 22-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 PP4_RS27240 2bc1c17c3c8e6a5b553ae5c413985827 471 SUPERFAMILY SSF56059 82 346 3.18E-66 T 22-04-2016 PP4_RS27240 2bc1c17c3c8e6a5b553ae5c413985827 471 SUPERFAMILY SSF52440 1 112 2.3E-44 T 22-04-2016 IPR016185 Pre-ATP-grasp domain PP4_RS27240 2bc1c17c3c8e6a5b553ae5c413985827 471 SUPERFAMILY SSF51246 329 445 3.3E-42 T 22-04-2016 IPR011054 Rudiment single hybrid motif PP4_RS27240 2bc1c17c3c8e6a5b553ae5c413985827 471 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain 114 320 1.7E-72 T 22-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 PP4_RS27240 2bc1c17c3c8e6a5b553ae5c413985827 471 Gene3D G3DSA:3.30.1490.20 129 200 8.5E-26 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 PP4_RS27240 2bc1c17c3c8e6a5b553ae5c413985827 471 Gene3D G3DSA:3.30.470.20 203 445 3.8E-96 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PP4_RS27240 2bc1c17c3c8e6a5b553ae5c413985827 471 Pfam PF00289 Biotin carboxylase, N-terminal domain 2 109 2.6E-42 T 22-04-2016 IPR005481 Biotin carboxylase-like, N-terminal domain PP4_RS27240 2bc1c17c3c8e6a5b553ae5c413985827 471 Gene3D G3DSA:3.40.50.20 2 128 3.6E-49 T 22-04-2016 IPR016185 Pre-ATP-grasp domain PP4_RS27240 2bc1c17c3c8e6a5b553ae5c413985827 471 PANTHER PTHR18866 1 468 0.0 T 22-04-2016 PP4_RS27240 2bc1c17c3c8e6a5b553ae5c413985827 471 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2. 284 291 - T 22-04-2016 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain GO:0005524 PP4_RS07285 7cf2232ac74000dacf61b5841ce880d1 277 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 10 215 1.9E-24 T 22-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain PP4_RS07285 7cf2232ac74000dacf61b5841ce880d1 277 SUPERFAMILY SSF52540 8 265 1.46E-54 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS07285 7cf2232ac74000dacf61b5841ce880d1 277 PANTHER PTHR13696 1 259 3.7E-119 T 22-04-2016 PP4_RS07285 7cf2232ac74000dacf61b5841ce880d1 277 PANTHER PTHR13696:SF3 1 259 3.7E-119 T 22-04-2016 PP4_RS07285 7cf2232ac74000dacf61b5841ce880d1 277 Gene3D G3DSA:3.40.50.300 9 267 3.5E-56 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS07285 7cf2232ac74000dacf61b5841ce880d1 277 PIRSF PIRSF003092 3 271 3.5E-81 T 22-04-2016 IPR025501 ATP binding protein MinD PP4_RS25435 ff7af8f19e3ca4cd20302cf70aa526d2 631 Pfam PF00271 Helicase conserved C-terminal domain 244 344 1.4E-26 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS25435 ff7af8f19e3ca4cd20302cf70aa526d2 631 SMART SM00490 263 344 2.1E-31 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS25435 ff7af8f19e3ca4cd20302cf70aa526d2 631 Pfam PF00270 DEAD/DEAH box helicase 25 201 3.8E-46 T 22-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 PP4_RS25435 ff7af8f19e3ca4cd20302cf70aa526d2 631 PANTHER PTHR24031 1 575 4.9E-211 T 22-04-2016 PP4_RS25435 ff7af8f19e3ca4cd20302cf70aa526d2 631 PANTHER PTHR24031:SF0 1 575 4.9E-211 T 22-04-2016 PP4_RS25435 ff7af8f19e3ca4cd20302cf70aa526d2 631 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 158 166 - T 22-04-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site PP4_RS25435 ff7af8f19e3ca4cd20302cf70aa526d2 631 SMART SM00487 20 227 3.1E-62 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PP4_RS25435 ff7af8f19e3ca4cd20302cf70aa526d2 631 SUPERFAMILY SSF52540 24 105 5.84E-6 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25435 ff7af8f19e3ca4cd20302cf70aa526d2 631 Gene3D G3DSA:3.40.50.300 1 216 4.1E-79 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25435 ff7af8f19e3ca4cd20302cf70aa526d2 631 Hamap MF_00968 ATP-dependent RNA helicase RhlE [rhlE]. 1 556 49.119 T 22-04-2016 IPR028622 ATP-dependent RNA helicase RhlE GO:0004004|GO:0042255 PP4_RS25435 ff7af8f19e3ca4cd20302cf70aa526d2 631 Gene3D G3DSA:3.40.50.300 217 377 7.8E-53 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25435 ff7af8f19e3ca4cd20302cf70aa526d2 631 SUPERFAMILY SSF52540 79 365 2.15E-71 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS07485 96db3c956fb34e562029f887ddedafab 471 PRINTS PR01050 Pyruvate kinase family signature 187 201 4.3E-64 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS07485 96db3c956fb34e562029f887ddedafab 471 PRINTS PR01050 Pyruvate kinase family signature 291 309 4.3E-64 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS07485 96db3c956fb34e562029f887ddedafab 471 PRINTS PR01050 Pyruvate kinase family signature 62 78 4.3E-64 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS07485 96db3c956fb34e562029f887ddedafab 471 PRINTS PR01050 Pyruvate kinase family signature 310 326 4.3E-64 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS07485 96db3c956fb34e562029f887ddedafab 471 PRINTS PR01050 Pyruvate kinase family signature 214 240 4.3E-64 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS07485 96db3c956fb34e562029f887ddedafab 471 PRINTS PR01050 Pyruvate kinase family signature 266 290 4.3E-64 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS07485 96db3c956fb34e562029f887ddedafab 471 PRINTS PR01050 Pyruvate kinase family signature 241 265 4.3E-64 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS07485 96db3c956fb34e562029f887ddedafab 471 SUPERFAMILY SSF50800 73 168 1.69E-25 T 22-04-2016 IPR011037 Pyruvate kinase-like, insert domain PP4_RS07485 96db3c956fb34e562029f887ddedafab 471 Gene3D G3DSA:2.40.33.10 76 168 3.1E-29 T 22-04-2016 IPR015806 Pyruvate kinase, beta-barrel insert domain GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS07485 96db3c956fb34e562029f887ddedafab 471 Pfam PF00224 Pyruvate kinase, barrel domain 5 334 6.0E-116 T 22-04-2016 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS07485 96db3c956fb34e562029f887ddedafab 471 ProSitePatterns PS00110 Pyruvate kinase active site signature. 212 224 - T 22-04-2016 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS07485 96db3c956fb34e562029f887ddedafab 471 SUPERFAMILY SSF52935 320 469 3.79E-35 T 22-04-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS07485 96db3c956fb34e562029f887ddedafab 471 PANTHER PTHR11817 6 469 8.2E-197 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS07485 96db3c956fb34e562029f887ddedafab 471 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 5 469 7.2E-153 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS07485 96db3c956fb34e562029f887ddedafab 471 Gene3D G3DSA:3.40.1380.20 324 467 2.1E-40 T 22-04-2016 IPR015794 Pyruvate kinase, alpha/beta GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS07485 96db3c956fb34e562029f887ddedafab 471 Gene3D G3DSA:3.20.20.60 169 323 2.2E-94 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PP4_RS07485 96db3c956fb34e562029f887ddedafab 471 Gene3D G3DSA:3.20.20.60 6 75 2.2E-94 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PP4_RS07485 96db3c956fb34e562029f887ddedafab 471 Pfam PF02887 Pyruvate kinase, alpha/beta domain 355 467 6.5E-25 T 22-04-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS07485 96db3c956fb34e562029f887ddedafab 471 SUPERFAMILY SSF51621 157 339 6.63E-93 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PP4_RS07485 96db3c956fb34e562029f887ddedafab 471 SUPERFAMILY SSF51621 5 77 6.63E-93 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PP4_RS25050 ee177ad6dc18cede9cc1e8af88ca3e38 343 TIGRFAM TIGR00157 TIGR00157: ribosome small subunit-dependent GTPase A 82 335 4.1E-75 T 22-04-2016 IPR004881 Ribosome biogenesis GTPase RsgA, putative GO:0003924|GO:0005525 PP4_RS25050 ee177ad6dc18cede9cc1e8af88ca3e38 343 PANTHER PTHR32120:SF2 3 340 9.8E-139 T 22-04-2016 PP4_RS25050 ee177ad6dc18cede9cc1e8af88ca3e38 343 Gene3D G3DSA:3.40.50.300 117 277 1.5E-50 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25050 ee177ad6dc18cede9cc1e8af88ca3e38 343 Hamap MF_01820 Putative ribosome biogenesis GTPase RsgA [rsgA]. 45 342 36.027 T 22-04-2016 IPR004881 Ribosome biogenesis GTPase RsgA, putative GO:0003924|GO:0005525 PP4_RS25050 ee177ad6dc18cede9cc1e8af88ca3e38 343 PANTHER PTHR32120 3 340 9.8E-139 T 22-04-2016 PP4_RS25050 ee177ad6dc18cede9cc1e8af88ca3e38 343 Gene3D G3DSA:1.10.40.50 279 340 2.3E-21 T 22-04-2016 PP4_RS25050 ee177ad6dc18cede9cc1e8af88ca3e38 343 Pfam PF03193 Protein of unknown function, DUF258 104 277 4.4E-54 T 22-04-2016 IPR010914 RsgA type GTPase domain GO:0003924|GO:0005525 PP4_RS25050 ee177ad6dc18cede9cc1e8af88ca3e38 343 SUPERFAMILY SSF52540 117 336 2.04E-54 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS00620 7f9a94d50ed307d80ef5979981c8649a 448 Gene3D G3DSA:1.10.8.60 320 389 5.5E-26 T 22-04-2016 PP4_RS00620 7f9a94d50ed307d80ef5979981c8649a 448 Gene3D G3DSA:3.40.50.300 149 319 2.1E-49 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS00620 7f9a94d50ed307d80ef5979981c8649a 448 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 171 184 - T 22-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 PP4_RS00620 7f9a94d50ed307d80ef5979981c8649a 448 SMART SM00382 167 310 8.5E-10 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS00620 7f9a94d50ed307d80ef5979981c8649a 448 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 233 248 - T 22-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PP4_RS00620 7f9a94d50ed307d80ef5979981c8649a 448 SUPERFAMILY SSF46689 360 448 4.18E-8 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS00620 7f9a94d50ed307d80ef5979981c8649a 448 SMART SM00448 9 120 4.2E-33 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS00620 7f9a94d50ed307d80ef5979981c8649a 448 Gene3D G3DSA:1.10.10.60 392 448 8.6E-9 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS00620 7f9a94d50ed307d80ef5979981c8649a 448 PANTHER PTHR32071 7 448 2.1E-188 T 22-04-2016 PP4_RS00620 7f9a94d50ed307d80ef5979981c8649a 448 SUPERFAMILY SSF52172 9 192 1.1E-38 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS00620 7f9a94d50ed307d80ef5979981c8649a 448 Gene3D G3DSA:3.40.50.2300 10 138 9.5E-33 T 22-04-2016 PP4_RS00620 7f9a94d50ed307d80ef5979981c8649a 448 Pfam PF00158 Sigma-54 interaction domain 150 313 1.1E-62 T 22-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 PP4_RS00620 7f9a94d50ed307d80ef5979981c8649a 448 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 360 369 - T 22-04-2016 IPR025944 Sigma-54 interaction domain, conserved site PP4_RS00620 7f9a94d50ed307d80ef5979981c8649a 448 PANTHER PTHR32071:SF18 7 448 2.1E-188 T 22-04-2016 PP4_RS00620 7f9a94d50ed307d80ef5979981c8649a 448 Pfam PF02954 Bacterial regulatory protein, Fis family 406 446 7.4E-9 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS00620 7f9a94d50ed307d80ef5979981c8649a 448 SUPERFAMILY SSF52540 150 388 6.04E-70 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS00620 7f9a94d50ed307d80ef5979981c8649a 448 Pfam PF00072 Response regulator receiver domain 11 119 1.6E-28 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS21455 f04a2c1ae1273b2b64afa2cb19383a82 184 Pfam PF03734 L,D-transpeptidase catalytic domain 49 182 9.2E-19 T 22-04-2016 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 UniPathway: UPA00219 PP4_RS21455 f04a2c1ae1273b2b64afa2cb19383a82 184 PANTHER PTHR36699 46 184 1.2E-54 T 22-04-2016 PP4_RS21455 f04a2c1ae1273b2b64afa2cb19383a82 184 Gene3D G3DSA:2.40.440.10 48 183 3.1E-19 T 22-04-2016 PP4_RS21455 f04a2c1ae1273b2b64afa2cb19383a82 184 SUPERFAMILY SSF141523 49 182 9.94E-23 T 22-04-2016 PP4_RS01560 4d53b31e305afb192637c8a7110ea120 250 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 27 245 7.4E-68 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS01560 4d53b31e305afb192637c8a7110ea120 250 Gene3D G3DSA:3.40.190.10 207 248 7.2E-46 T 22-04-2016 PP4_RS01560 4d53b31e305afb192637c8a7110ea120 250 Gene3D G3DSA:3.40.190.10 24 112 7.2E-46 T 22-04-2016 PP4_RS01560 4d53b31e305afb192637c8a7110ea120 250 SUPERFAMILY SSF53850 5 248 5.88E-72 T 22-04-2016 PP4_RS01560 4d53b31e305afb192637c8a7110ea120 250 SMART SM00062 26 248 6.8E-64 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS01560 4d53b31e305afb192637c8a7110ea120 250 PANTHER PTHR18966:SF152 25 250 1.1E-76 T 22-04-2016 PP4_RS01560 4d53b31e305afb192637c8a7110ea120 250 PANTHER PTHR18966 25 250 1.1E-76 T 22-04-2016 PP4_RS01560 4d53b31e305afb192637c8a7110ea120 250 Gene3D G3DSA:3.40.190.10 114 205 1.9E-23 T 22-04-2016 PP4_RS07120 6c9d3f43ea750515253fed7b1c2b505c 441 Gene3D G3DSA:3.40.640.10 43 307 1.8E-77 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS07120 6c9d3f43ea750515253fed7b1c2b505c 441 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 47 432 5.8E-111 T 22-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase PP4_RS07120 6c9d3f43ea750515253fed7b1c2b505c 441 PANTHER PTHR30244 280 439 1.5E-175 T 22-04-2016 PP4_RS07120 6c9d3f43ea750515253fed7b1c2b505c 441 PANTHER PTHR30244 28 252 1.5E-175 T 22-04-2016 PP4_RS07120 6c9d3f43ea750515253fed7b1c2b505c 441 Gene3D G3DSA:3.90.1150.10 308 432 7.7E-45 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS07120 6c9d3f43ea750515253fed7b1c2b505c 441 SUPERFAMILY SSF53383 38 437 5.64E-103 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS07120 6c9d3f43ea750515253fed7b1c2b505c 441 PANTHER PTHR30244:SF11 280 439 1.5E-175 T 22-04-2016 PP4_RS07120 6c9d3f43ea750515253fed7b1c2b505c 441 PANTHER PTHR30244:SF11 28 252 1.5E-175 T 22-04-2016 PP4_RS07120 6c9d3f43ea750515253fed7b1c2b505c 441 PIRSF PIRSF000390 8 440 5.7E-118 T 22-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase PP4_RS24055 760a66d321754614918df363534f6aa1 100 Gene3D G3DSA:3.30.460.10 13 99 3.4E-17 T 22-04-2016 PP4_RS24055 760a66d321754614918df363534f6aa1 100 Pfam PF01909 Nucleotidyltransferase domain 28 94 2.6E-7 T 22-04-2016 IPR002934 Polymerase, nucleotidyl transferase domain GO:0016779 PP4_RS24055 760a66d321754614918df363534f6aa1 100 PANTHER PTHR33571 1 98 4.6E-15 T 22-04-2016 PP4_RS24055 760a66d321754614918df363534f6aa1 100 SUPERFAMILY SSF81301 14 99 1.34E-15 T 22-04-2016 PP4_RS03090 2c6284914bdf5525ddff47c848131f28 253 Gene3D G3DSA:2.40.50.100 134 170 1.6E-11 T 22-04-2016 PP4_RS03090 2c6284914bdf5525ddff47c848131f28 253 Gene3D G3DSA:2.40.50.100 45 76 1.6E-11 T 22-04-2016 PP4_RS03090 2c6284914bdf5525ddff47c848131f28 253 Pfam PF13437 HlyD family secretion protein 142 237 1.1E-14 T 22-04-2016 PP4_RS03090 2c6284914bdf5525ddff47c848131f28 253 PANTHER PTHR30469 40 248 1.0E-31 T 22-04-2016 PP4_RS03090 2c6284914bdf5525ddff47c848131f28 253 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 36 249 6.2E-36 T 22-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 PP4_RS03090 2c6284914bdf5525ddff47c848131f28 253 SUPERFAMILY SSF111369 45 248 1.02E-19 T 22-04-2016 PP4_RS02095 4710cfc75ae633f4f920bfe93391a0ea 104 PANTHER PTHR36511 1 101 1.3E-22 T 22-04-2016 PP4_RS02095 4710cfc75ae633f4f920bfe93391a0ea 104 Gene3D G3DSA:1.10.260.40 44 96 5.6E-15 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS02095 4710cfc75ae633f4f920bfe93391a0ea 104 SUPERFAMILY SSF47413 42 92 1.15E-8 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS02095 4710cfc75ae633f4f920bfe93391a0ea 104 PANTHER PTHR36511:SF3 1 101 1.3E-22 T 22-04-2016 PP4_RS16590 fe61509504734840112aec0e73994bf5 176 SUPERFAMILY SSF88946 13 103 2.08E-14 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS16590 fe61509504734840112aec0e73994bf5 176 SUPERFAMILY SSF88659 111 167 2.4E-11 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS16590 fe61509504734840112aec0e73994bf5 176 Gene3D G3DSA:1.10.1740.10 12 107 2.7E-12 T 22-04-2016 PP4_RS16590 fe61509504734840112aec0e73994bf5 176 PANTHER PTHR30173 10 167 2.8E-36 T 22-04-2016 PP4_RS16590 fe61509504734840112aec0e73994bf5 176 Pfam PF04542 Sigma-70 region 2 15 82 1.1E-12 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS16590 fe61509504734840112aec0e73994bf5 176 Gene3D G3DSA:1.10.10.10 113 167 2.3E-12 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16590 fe61509504734840112aec0e73994bf5 176 Pfam PF08281 Sigma-70, region 4 116 167 1.1E-15 T 22-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS16590 fe61509504734840112aec0e73994bf5 176 PANTHER PTHR30173:SF9 10 167 2.8E-36 T 22-04-2016 PP4_RS16590 fe61509504734840112aec0e73994bf5 176 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 12 166 1.4E-23 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS02190 092f58728e14c43cf9592426d8e4acfc 288 PANTHER PTHR24032:SF27 1 264 6.2E-132 T 22-04-2016 PP4_RS02190 092f58728e14c43cf9592426d8e4acfc 288 Hamap MF_00199 Bis(5'-nucleosyl)-tetraphosphatase, symmetrical [apaH]. 1 272 47.209 T 22-04-2016 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 PP4_RS02190 092f58728e14c43cf9592426d8e4acfc 288 PANTHER PTHR24032 1 264 6.2E-132 T 22-04-2016 PP4_RS02190 092f58728e14c43cf9592426d8e4acfc 288 PIRSF PIRSF000903 1 276 4.1E-119 T 22-04-2016 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 PP4_RS02190 092f58728e14c43cf9592426d8e4acfc 288 Gene3D G3DSA:3.60.21.10 170 268 1.6E-51 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS02190 092f58728e14c43cf9592426d8e4acfc 288 Gene3D G3DSA:3.60.21.10 1 132 1.6E-51 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS02190 092f58728e14c43cf9592426d8e4acfc 288 SUPERFAMILY SSF56300 1 257 8.31E-56 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS02190 092f58728e14c43cf9592426d8e4acfc 288 Pfam PF00149 Calcineurin-like phosphoesterase 4 89 2.7E-10 T 22-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 PP4_RS02190 092f58728e14c43cf9592426d8e4acfc 288 TIGRFAM TIGR00668 apaH: bis(5'-nucleosyl)-tetraphosphatase (symmetrical) 1 264 4.4E-96 T 22-04-2016 IPR004617 Bis(5'-nucleosyl)-tetraphosphatase (symmetrical) GO:0008803 KEGG: 00230+3.6.1.41 PP4_RS02895 fe8c65b70e57594548db5d64c703d61e 295 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 80 96 - T 22-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 PP4_RS02895 fe8c65b70e57594548db5d64c703d61e 295 PANTHER PTHR12001:SF23 10 295 8.4E-100 T 22-04-2016 PP4_RS02895 fe8c65b70e57594548db5d64c703d61e 295 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 214 226 - T 22-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 PP4_RS02895 fe8c65b70e57594548db5d64c703d61e 295 Pfam PF00348 Polyprenyl synthetase 30 259 3.7E-55 T 22-04-2016 IPR000092 Polyprenyl synthetase GO:0008299 PP4_RS02895 fe8c65b70e57594548db5d64c703d61e 295 SUPERFAMILY SSF48576 6 288 1.07E-83 T 22-04-2016 IPR008949 Isoprenoid synthase domain PP4_RS02895 fe8c65b70e57594548db5d64c703d61e 295 Gene3D G3DSA:1.10.600.10 5 293 4.2E-91 T 22-04-2016 IPR008949 Isoprenoid synthase domain PP4_RS02895 fe8c65b70e57594548db5d64c703d61e 295 PANTHER PTHR12001 10 295 8.4E-100 T 22-04-2016 IPR017446 Polyprenyl synthetase-related PP4_RS11780 3125e41ece407776865d6c2bccb56618 318 SMART SM00342 229 313 3.8E-23 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS11780 3125e41ece407776865d6c2bccb56618 318 Gene3D G3DSA:1.10.10.60 214 264 7.3E-9 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS11780 3125e41ece407776865d6c2bccb56618 318 PANTHER PTHR11019 80 313 2.4E-25 T 22-04-2016 PP4_RS11780 3125e41ece407776865d6c2bccb56618 318 Pfam PF14525 AraC-binding-like domain 19 194 4.0E-23 T 22-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PP4_RS11780 3125e41ece407776865d6c2bccb56618 318 Gene3D G3DSA:1.10.10.60 265 314 2.2E-12 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS11780 3125e41ece407776865d6c2bccb56618 318 Pfam PF12833 Helix-turn-helix domain 235 314 3.7E-18 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS11780 3125e41ece407776865d6c2bccb56618 318 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 265 309 - T 22-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PP4_RS11780 3125e41ece407776865d6c2bccb56618 318 SUPERFAMILY SSF46689 265 314 7.17E-8 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS11780 3125e41ece407776865d6c2bccb56618 318 PANTHER PTHR11019:SF50 80 313 2.4E-25 T 22-04-2016 PP4_RS26010 e2c633694165f8b71b276554bd6e284e 196 Pfam PF02325 YGGT family 14 80 3.8E-18 T 22-04-2016 IPR003425 CCB3/YggT GO:0016020 PP4_RS26010 e2c633694165f8b71b276554bd6e284e 196 Pfam PF02325 YGGT family 109 178 1.7E-19 T 22-04-2016 IPR003425 CCB3/YggT GO:0016020 PP4_RS26010 e2c633694165f8b71b276554bd6e284e 196 PANTHER PTHR33219 9 195 6.3E-62 T 22-04-2016 PP4_RS26010 e2c633694165f8b71b276554bd6e284e 196 PANTHER PTHR33219:SF5 9 195 6.3E-62 T 22-04-2016 PP4_RS24650 27d2f434781697b1653cf4cad262e7ba 431 SMART SM01209 102 295 4.5E-140 T 22-04-2016 PP4_RS24650 27d2f434781697b1653cf4cad262e7ba 431 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 422 42.843 T 22-04-2016 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 PP4_RS24650 27d2f434781697b1653cf4cad262e7ba 431 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 1 101 3.3E-34 T 22-04-2016 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 PP4_RS24650 27d2f434781697b1653cf4cad262e7ba 431 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 1 422 2.1E-180 T 22-04-2016 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 PP4_RS24650 27d2f434781697b1653cf4cad262e7ba 431 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 289 296 - T 22-04-2016 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 PP4_RS24650 27d2f434781697b1653cf4cad262e7ba 431 Gene3D G3DSA:3.30.1490.20 120 189 3.7E-34 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 PP4_RS24650 27d2f434781697b1653cf4cad262e7ba 431 Gene3D G3DSA:3.30.470.20 190 327 2.0E-61 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PP4_RS24650 27d2f434781697b1653cf4cad262e7ba 431 SUPERFAMILY SSF51246 328 423 3.03E-32 T 22-04-2016 IPR011054 Rudiment single hybrid motif PP4_RS24650 27d2f434781697b1653cf4cad262e7ba 431 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 331 420 7.7E-28 T 22-04-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 PP4_RS24650 27d2f434781697b1653cf4cad262e7ba 431 SUPERFAMILY SSF56059 103 321 6.54E-65 T 22-04-2016 PP4_RS24650 27d2f434781697b1653cf4cad262e7ba 431 Gene3D G3DSA:3.40.50.20 2 94 8.8E-37 T 22-04-2016 IPR016185 Pre-ATP-grasp domain PP4_RS24650 27d2f434781697b1653cf4cad262e7ba 431 SMART SM01210 329 422 4.4E-53 T 22-04-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 PP4_RS24650 27d2f434781697b1653cf4cad262e7ba 431 Gene3D G3DSA:3.90.600.10 330 422 1.9E-34 T 22-04-2016 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 PP4_RS24650 27d2f434781697b1653cf4cad262e7ba 431 PANTHER PTHR10520 1 425 3.7E-287 T 22-04-2016 PP4_RS24650 27d2f434781697b1653cf4cad262e7ba 431 SUPERFAMILY SSF52440 1 102 1.58E-35 T 22-04-2016 IPR016185 Pre-ATP-grasp domain PP4_RS24650 27d2f434781697b1653cf4cad262e7ba 431 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 102 295 1.7E-82 T 22-04-2016 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|UniPathway: UPA00074 PP4_RS10655 86734e10b8a42b281e9db706990a5ed0 705 Pfam PF13549 ATP-grasp domain 476 696 1.3E-52 T 22-04-2016 PP4_RS10655 86734e10b8a42b281e9db706990a5ed0 705 Gene3D G3DSA:3.40.50.720 4 128 5.2E-20 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS10655 86734e10b8a42b281e9db706990a5ed0 705 SUPERFAMILY SSF51735 9 130 2.86E-23 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS10655 86734e10b8a42b281e9db706990a5ed0 705 SUPERFAMILY SSF52210 132 289 8.77E-32 T 22-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 PP4_RS10655 86734e10b8a42b281e9db706990a5ed0 705 SUPERFAMILY SSF52210 295 459 1.83E-18 T 22-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 PP4_RS10655 86734e10b8a42b281e9db706990a5ed0 705 Gene3D G3DSA:3.40.50.261 129 288 6.7E-14 T 22-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 PP4_RS10655 86734e10b8a42b281e9db706990a5ed0 705 PANTHER PTHR33303:SF3 459 697 8.7E-186 T 22-04-2016 PP4_RS10655 86734e10b8a42b281e9db706990a5ed0 705 PANTHER PTHR33303:SF3 6 438 8.7E-186 T 22-04-2016 PP4_RS10655 86734e10b8a42b281e9db706990a5ed0 705 PANTHER PTHR33303 459 697 8.7E-186 T 22-04-2016 PP4_RS10655 86734e10b8a42b281e9db706990a5ed0 705 PANTHER PTHR33303 6 438 8.7E-186 T 22-04-2016 PP4_RS10655 86734e10b8a42b281e9db706990a5ed0 705 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 155 288 5.4E-34 T 22-04-2016 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain PP4_RS10655 86734e10b8a42b281e9db706990a5ed0 705 SMART SM00881 12 102 9.4E-16 T 22-04-2016 IPR003781 CoA-binding GO:0048037 PP4_RS10655 86734e10b8a42b281e9db706990a5ed0 705 Pfam PF13380 CoA binding domain 28 133 2.1E-13 T 22-04-2016 IPR003781 CoA-binding GO:0048037 PP4_RS10655 86734e10b8a42b281e9db706990a5ed0 705 SUPERFAMILY SSF56059 483 699 5.08E-31 T 22-04-2016 PP4_RS26480 1111773a1703a07747a152a9abf625ca 452 Gene3D G3DSA:3.30.590.10 118 438 1.9E-93 T 22-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 PP4_RS26480 1111773a1703a07747a152a9abf625ca 452 SMART SM01230 114 370 8.4E-111 T 22-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS26480 1111773a1703a07747a152a9abf625ca 452 PANTHER PTHR20852 1 452 0.0 T 22-04-2016 PP4_RS26480 1111773a1703a07747a152a9abf625ca 452 PANTHER PTHR20852:SF63 1 452 0.0 T 22-04-2016 PP4_RS26480 1111773a1703a07747a152a9abf625ca 452 SUPERFAMILY SSF54368 5 113 9.29E-19 T 22-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS26480 1111773a1703a07747a152a9abf625ca 452 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 250 265 - T 22-04-2016 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS26480 1111773a1703a07747a152a9abf625ca 452 SUPERFAMILY SSF55931 114 449 2.26E-106 T 22-04-2016 PP4_RS26480 1111773a1703a07747a152a9abf625ca 452 Gene3D G3DSA:3.10.20.70 6 117 5.2E-16 T 22-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS26480 1111773a1703a07747a152a9abf625ca 452 Pfam PF00120 Glutamine synthetase, catalytic domain 115 446 6.4E-109 T 22-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS22515 9171dffae6eb22333a13315051519759 518 Pfam PF00158 Sigma-54 interaction domain 193 359 4.0E-68 T 22-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 PP4_RS22515 9171dffae6eb22333a13315051519759 518 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 217 230 - T 22-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 PP4_RS22515 9171dffae6eb22333a13315051519759 518 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 279 294 - T 22-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PP4_RS22515 9171dffae6eb22333a13315051519759 518 Gene3D G3DSA:3.30.450.40 7 174 9.7E-17 T 22-04-2016 IPR029016 GAF domain-like PP4_RS22515 9171dffae6eb22333a13315051519759 518 SUPERFAMILY SSF52540 192 430 1.57E-70 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS22515 9171dffae6eb22333a13315051519759 518 SMART SM00382 213 356 1.9E-10 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS22515 9171dffae6eb22333a13315051519759 518 PANTHER PTHR32071:SF35 160 517 4.0E-184 T 22-04-2016 PP4_RS22515 9171dffae6eb22333a13315051519759 518 Gene3D G3DSA:1.10.10.60 416 517 2.8E-9 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS22515 9171dffae6eb22333a13315051519759 518 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 481 498 3.91E-5 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS22515 9171dffae6eb22333a13315051519759 518 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 498 518 3.91E-5 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS22515 9171dffae6eb22333a13315051519759 518 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 406 415 - T 22-04-2016 IPR025944 Sigma-54 interaction domain, conserved site PP4_RS22515 9171dffae6eb22333a13315051519759 518 PANTHER PTHR32071 160 517 4.0E-184 T 22-04-2016 PP4_RS22515 9171dffae6eb22333a13315051519759 518 Gene3D G3DSA:1.10.8.60 366 415 1.2E-19 T 22-04-2016 PP4_RS22515 9171dffae6eb22333a13315051519759 518 SMART SM00065 22 170 1.0E-6 T 22-04-2016 IPR003018 GAF domain GO:0005515 PP4_RS22515 9171dffae6eb22333a13315051519759 518 SUPERFAMILY SSF55781 24 159 6.11E-16 T 22-04-2016 IPR029016 GAF domain-like PP4_RS22515 9171dffae6eb22333a13315051519759 518 SUPERFAMILY SSF46689 468 517 1.3E-7 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS22515 9171dffae6eb22333a13315051519759 518 Pfam PF01590 GAF domain 25 159 4.6E-9 T 22-04-2016 IPR003018 GAF domain GO:0005515 PP4_RS22515 9171dffae6eb22333a13315051519759 518 Pfam PF02954 Bacterial regulatory protein, Fis family 480 510 1.2E-5 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS22515 9171dffae6eb22333a13315051519759 518 Gene3D G3DSA:3.40.50.300 190 365 3.7E-57 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS04955 8abd3eb5cf00d95e89f6c9ed11f0f52f 84 PANTHER PTHR39585 2 83 4.3E-29 T 22-04-2016 PP4_RS04955 8abd3eb5cf00d95e89f6c9ed11f0f52f 84 Gene3D G3DSA:1.10.150.250 3 83 8.7E-27 T 22-04-2016 IPR005631 Flavinator of succinate dehydrogenase PP4_RS04955 8abd3eb5cf00d95e89f6c9ed11f0f52f 84 PANTHER PTHR39585:SF1 2 83 4.3E-29 T 22-04-2016 PP4_RS04955 8abd3eb5cf00d95e89f6c9ed11f0f52f 84 SUPERFAMILY SSF109910 2 79 5.36E-24 T 22-04-2016 IPR005631 Flavinator of succinate dehydrogenase PP4_RS04955 8abd3eb5cf00d95e89f6c9ed11f0f52f 84 Pfam PF03937 Flavinator of succinate dehydrogenase 8 77 7.4E-23 T 22-04-2016 IPR005631 Flavinator of succinate dehydrogenase PP4_RS15675 c7e33446134c44d86613aaff98a0d0b2 446 SUPERFAMILY SSF111369 207 392 9.55E-11 T 22-04-2016 PP4_RS15675 c7e33446134c44d86613aaff98a0d0b2 446 PANTHER PTHR32347:SF12 249 425 3.0E-12 T 22-04-2016 PP4_RS15675 c7e33446134c44d86613aaff98a0d0b2 446 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 213 381 7.3E-9 T 22-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PP4_RS15675 c7e33446134c44d86613aaff98a0d0b2 446 PANTHER PTHR32347 249 425 3.0E-12 T 22-04-2016 PP4_RS15675 c7e33446134c44d86613aaff98a0d0b2 446 Gene3D G3DSA:2.40.50.100 215 245 2.7E-7 T 22-04-2016 PP4_RS15675 c7e33446134c44d86613aaff98a0d0b2 446 Gene3D G3DSA:2.40.50.100 306 337 2.7E-7 T 22-04-2016 PP4_RS12140 3a76e4634ebdfe9204ac6af3dec87094 521 SUPERFAMILY SSF81296 391 521 6.02E-54 T 22-04-2016 IPR014756 Immunoglobulin E-set PP4_RS12140 3a76e4634ebdfe9204ac6af3dec87094 521 TIGRFAM TIGR03908 QH_alpha: quinohemoprotein amine dehydrogenase, alpha subunit 25 520 9.8E-211 T 22-04-2016 IPR023887 Quinohemoprotein amine dehydrogenase, alpha subunit PP4_RS12140 3a76e4634ebdfe9204ac6af3dec87094 521 Pfam PF09100 Quinohemoprotein amine dehydrogenase, alpha subunit domain IV 395 520 4.6E-48 T 22-04-2016 IPR015184 Quinohemoprotein amine dehydrogenase, alpha subunit domain IV PP4_RS12140 3a76e4634ebdfe9204ac6af3dec87094 521 Pfam PF09099 Quinohemoprotein amine dehydrogenase, alpha subunit domain III 311 390 3.3E-25 T 22-04-2016 IPR015183 Quinohemoprotein amine dehydrogenase, alpha subunit domain III PP4_RS12140 3a76e4634ebdfe9204ac6af3dec87094 521 Pfam PF14930 Quinohemoprotein amine dehydrogenase, alpha subunit domain II 206 307 4.5E-38 T 22-04-2016 IPR009111 Quinohemoprotein amine dehydrogenase, alpha subunit, domain 2 PP4_RS12140 3a76e4634ebdfe9204ac6af3dec87094 521 SUPERFAMILY SSF81296 310 390 2.8E-22 T 22-04-2016 IPR014756 Immunoglobulin E-set PP4_RS12140 3a76e4634ebdfe9204ac6af3dec87094 521 Gene3D G3DSA:2.40.128.120 203 310 1.5E-43 T 22-04-2016 IPR009111 Quinohemoprotein amine dehydrogenase, alpha subunit, domain 2 PP4_RS12140 3a76e4634ebdfe9204ac6af3dec87094 521 SUPERFAMILY SSF69298 190 307 1.44E-41 T 22-04-2016 IPR009111 Quinohemoprotein amine dehydrogenase, alpha subunit, domain 2 PP4_RS12140 3a76e4634ebdfe9204ac6af3dec87094 521 SUPERFAMILY SSF46626 29 110 1.18E-19 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS12140 3a76e4634ebdfe9204ac6af3dec87094 521 Gene3D G3DSA:2.60.40.10 311 389 7.6E-32 T 22-04-2016 IPR013783 Immunoglobulin-like fold PP4_RS12140 3a76e4634ebdfe9204ac6af3dec87094 521 Pfam PF09098 Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding 31 194 1.1E-72 T 22-04-2016 IPR015182 Quinohemoprotein amine dehydrogenase, alpha subunit, haem binding domain PP4_RS12140 3a76e4634ebdfe9204ac6af3dec87094 521 Gene3D G3DSA:2.60.40.10 390 513 2.9E-58 T 22-04-2016 IPR013783 Immunoglobulin-like fold PP4_RS12140 3a76e4634ebdfe9204ac6af3dec87094 521 SUPERFAMILY SSF46626 114 192 1.65E-39 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS12140 3a76e4634ebdfe9204ac6af3dec87094 521 Gene3D G3DSA:1.10.760.10 28 95 2.0E-4 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS01170 143e680244684092a63a6d9942596aa4 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 9.8E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS01170 143e680244684092a63a6d9942596aa4 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 9.8E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS01170 143e680244684092a63a6d9942596aa4 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 9.8E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS01170 143e680244684092a63a6d9942596aa4 304 Gene3D G3DSA:3.40.190.10 91 184 1.3E-14 T 22-04-2016 PP4_RS01170 143e680244684092a63a6d9942596aa4 304 Pfam PF03466 LysR substrate binding domain 90 297 1.7E-24 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS01170 143e680244684092a63a6d9942596aa4 304 Gene3D G3DSA:1.10.10.10 3 89 5.1E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS01170 143e680244684092a63a6d9942596aa4 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.7E-16 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS01170 143e680244684092a63a6d9942596aa4 304 Gene3D G3DSA:3.40.190.10 185 264 1.7E-8 T 22-04-2016 PP4_RS01170 143e680244684092a63a6d9942596aa4 304 SUPERFAMILY SSF53850 91 298 4.34E-27 T 22-04-2016 PP4_RS01170 143e680244684092a63a6d9942596aa4 304 PANTHER PTHR30419:SF7 1 298 7.5E-114 T 22-04-2016 PP4_RS01170 143e680244684092a63a6d9942596aa4 304 PANTHER PTHR30419 1 298 7.5E-114 T 22-04-2016 PP4_RS01170 143e680244684092a63a6d9942596aa4 304 SUPERFAMILY SSF46785 1 85 5.99E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS23595 24c683280939f3178f043367ecd08442 266 PIRSF PIRSF000388 2 266 7.9E-98 T 22-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 PP4_RS23595 24c683280939f3178f043367ecd08442 266 PANTHER PTHR20881 1 264 3.4E-169 T 22-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 PP4_RS23595 24c683280939f3178f043367ecd08442 266 SUPERFAMILY SSF51621 4 264 5.83E-102 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PP4_RS23595 24c683280939f3178f043367ecd08442 266 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 6 264 6.2E-102 T 22-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 PP4_RS23595 24c683280939f3178f043367ecd08442 266 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 4 264 41.82 T 22-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 PP4_RS23595 24c683280939f3178f043367ecd08442 266 Pfam PF02548 Ketopantoate hydroxymethyltransferase 4 259 9.5E-106 T 22-04-2016 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654|UniPathway: UPA00028 PP4_RS23595 24c683280939f3178f043367ecd08442 266 PANTHER PTHR20881:SF3 1 264 3.4E-169 T 22-04-2016 PP4_RS23595 24c683280939f3178f043367ecd08442 266 Gene3D G3DSA:3.20.20.60 3 264 1.7E-109 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PP4_RS25510 9114732aa72862cde090c6c3b6a99df0 301 SUPERFAMILY SSF74653 189 296 4.32E-17 T 22-04-2016 PP4_RS25510 9114732aa72862cde090c6c3b6a99df0 301 PANTHER PTHR33446 16 282 1.8E-46 T 22-04-2016 PP4_RS25510 9114732aa72862cde090c6c3b6a99df0 301 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 215 292 5.0E-14 T 22-04-2016 IPR006260 TonB, C-terminal GO:0006810 PP4_RS25510 9114732aa72862cde090c6c3b6a99df0 301 Gene3D G3DSA:3.30.1150.10 191 296 4.8E-20 T 22-04-2016 PP4_RS25510 9114732aa72862cde090c6c3b6a99df0 301 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 217 292 3.0E-12 T 22-04-2016 IPR006260 TonB, C-terminal GO:0006810 PP4_RS25510 9114732aa72862cde090c6c3b6a99df0 301 PANTHER PTHR33446:SF2 16 282 1.8E-46 T 22-04-2016 PP4_RS03295 12f4931adc933c51bc04184628696e1f 780 SUPERFAMILY SSF53955 41 258 2.7E-63 T 22-04-2016 IPR023346 Lysozyme-like domain PP4_RS03295 12f4931adc933c51bc04184628696e1f 780 PANTHER PTHR32282 1 681 1.9E-196 T 22-04-2016 PP4_RS03295 12f4931adc933c51bc04184628696e1f 780 Pfam PF00905 Penicillin binding protein transpeptidase domain 330 421 6.3E-8 T 22-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 PP4_RS03295 12f4931adc933c51bc04184628696e1f 780 SUPERFAMILY SSF56601 208 643 1.28E-89 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS03295 12f4931adc933c51bc04184628696e1f 780 TIGRFAM TIGR02073 PBP_1c: penicillin-binding protein 1C 41 778 6.6E-238 T 22-04-2016 IPR011815 Penicillin-binding protein 1C GO:0008955|GO:0009252 KEGG: 00230+2.4.2.-|KEGG: 00514+2.4.2.-|UniPathway: UPA00219 PP4_RS03295 12f4931adc933c51bc04184628696e1f 780 Pfam PF00912 Transglycosylase 60 226 3.6E-49 T 22-04-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 PP4_RS03295 12f4931adc933c51bc04184628696e1f 780 Pfam PF06832 Penicillin-Binding Protein C-terminus Family 693 776 1.6E-14 T 22-04-2016 IPR009647 Penicillin-binding, C-terminal KEGG: 00230+2.4.2.-|KEGG: 00514+2.4.2.-|UniPathway: UPA00219 PP4_RS03295 12f4931adc933c51bc04184628696e1f 780 Gene3D G3DSA:3.40.710.10 230 623 2.5E-64 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS03295 12f4931adc933c51bc04184628696e1f 780 PANTHER PTHR32282:SF0 1 681 1.9E-196 T 22-04-2016 PP4_RS03295 12f4931adc933c51bc04184628696e1f 780 Gene3D G3DSA:1.10.3810.10 58 229 2.7E-51 T 22-04-2016 PP4_RS19990 58fd337d970c73d2eb1ee2b92e7de510 233 SMART SM00934 7 227 1.0E-96 T 22-04-2016 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 PP4_RS19990 58fd337d970c73d2eb1ee2b92e7de510 233 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 59 72 - T 22-04-2016 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 PP4_RS19990 58fd337d970c73d2eb1ee2b92e7de510 233 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 7 226 2.0E-51 T 22-04-2016 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 PP4_RS19990 58fd337d970c73d2eb1ee2b92e7de510 233 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 8 226 2.7E-57 T 22-04-2016 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 PP4_RS19990 58fd337d970c73d2eb1ee2b92e7de510 233 SUPERFAMILY SSF51366 5 231 6.19E-73 T 22-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 PP4_RS19990 58fd337d970c73d2eb1ee2b92e7de510 233 PANTHER PTHR32119 7 232 1.1E-107 T 22-04-2016 PP4_RS19990 58fd337d970c73d2eb1ee2b92e7de510 233 PANTHER PTHR32119:SF2 7 232 1.1E-107 T 22-04-2016 PP4_RS19990 58fd337d970c73d2eb1ee2b92e7de510 233 Gene3D G3DSA:3.20.20.70 5 231 1.9E-85 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS19990 58fd337d970c73d2eb1ee2b92e7de510 233 Hamap MF_01200_B Orotidine 5'-phosphate decarboxylase [pyrF]. 5 232 38.777 T 22-04-2016 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|UniPathway: UPA00070 PP4_RS19320 a1cc255ed7d5fe7c85240753e54c988b 334 SMART SM00859 6 118 6.1E-21 T 22-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 PP4_RS19320 a1cc255ed7d5fe7c85240753e54c988b 334 Gene3D G3DSA:3.30.360.10 142 312 4.1E-54 T 22-04-2016 PP4_RS19320 a1cc255ed7d5fe7c85240753e54c988b 334 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 138 316 8.9E-43 T 22-04-2016 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PP4_RS19320 a1cc255ed7d5fe7c85240753e54c988b 334 PIRSF PIRSF000148 4 333 1.1E-86 T 22-04-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 PP4_RS19320 a1cc255ed7d5fe7c85240753e54c988b 334 SUPERFAMILY SSF55347 132 317 7.14E-52 T 22-04-2016 PP4_RS19320 a1cc255ed7d5fe7c85240753e54c988b 334 PANTHER PTHR10174:SF2 58 333 1.1E-35 T 22-04-2016 PP4_RS19320 a1cc255ed7d5fe7c85240753e54c988b 334 Gene3D G3DSA:3.40.50.720 2 141 8.9E-39 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS19320 a1cc255ed7d5fe7c85240753e54c988b 334 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 7 116 1.6E-25 T 22-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 PP4_RS19320 a1cc255ed7d5fe7c85240753e54c988b 334 PANTHER PTHR10174 58 333 1.1E-35 T 22-04-2016 PP4_RS19320 a1cc255ed7d5fe7c85240753e54c988b 334 SUPERFAMILY SSF51735 5 152 4.23E-35 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS05225 b0d8583567982622bcce3e607d3a5183 200 PANTHER PTHR10681 3 194 2.1E-83 T 22-04-2016 PP4_RS05225 b0d8583567982622bcce3e607d3a5183 200 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 160 194 1.1E-13 T 22-04-2016 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 PP4_RS05225 b0d8583567982622bcce3e607d3a5183 200 PIRSF PIRSF000239 1 198 1.5E-57 T 22-04-2016 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15 PP4_RS05225 b0d8583567982622bcce3e607d3a5183 200 Gene3D G3DSA:3.30.1020.10 157 193 1.1E-15 T 22-04-2016 PP4_RS05225 b0d8583567982622bcce3e607d3a5183 200 Pfam PF00578 AhpC/TSA family 5 139 1.1E-31 T 22-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 PP4_RS05225 b0d8583567982622bcce3e607d3a5183 200 Gene3D G3DSA:3.40.30.10 2 156 5.6E-55 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS05225 b0d8583567982622bcce3e607d3a5183 200 SUPERFAMILY SSF52833 3 194 2.03E-66 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS22880 0b241da2fd22fd825a6f74a60b80783e 276 Gene3D G3DSA:3.40.50.150 85 273 1.5E-69 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS22880 0b241da2fd22fd825a6f74a60b80783e 276 Pfam PF13847 Methyltransferase domain 109 239 4.2E-17 T 22-04-2016 IPR025714 Methyltransferase domain PP4_RS22880 0b241da2fd22fd825a6f74a60b80783e 276 SUPERFAMILY SSF53335 11 272 1.94E-60 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS22880 0b241da2fd22fd825a6f74a60b80783e 276 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 17 274 2.8E-73 T 22-04-2016 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 PP4_RS22880 0b241da2fd22fd825a6f74a60b80783e 276 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 179 185 - T 22-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 PP4_RS22880 0b241da2fd22fd825a6f74a60b80783e 276 Hamap MF_02126 Release factor glutamine methyltransferase [prmC]. 3 274 44.94 T 22-04-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 PP4_RS22880 0b241da2fd22fd825a6f74a60b80783e 276 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 22 270 3.6E-90 T 22-04-2016 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 PP4_RS22880 0b241da2fd22fd825a6f74a60b80783e 276 PANTHER PTHR18895 1 273 1.5E-102 T 22-04-2016 PP4_RS22880 0b241da2fd22fd825a6f74a60b80783e 276 PANTHER PTHR18895:SF64 1 273 1.5E-102 T 22-04-2016 PP4_RS22880 0b241da2fd22fd825a6f74a60b80783e 276 Gene3D G3DSA:1.10.8.10 11 83 4.3E-24 T 22-04-2016 PP4_RS24300 298bf2024f4999d15e62d66dd687e6a9 452 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 196 382 1.4E-16 T 22-04-2016 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 PP4_RS24300 298bf2024f4999d15e62d66dd687e6a9 452 Gene3D G3DSA:2.102.10.10 45 142 3.4E-22 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 PP4_RS24300 298bf2024f4999d15e62d66dd687e6a9 452 SUPERFAMILY SSF50022 9 162 9.17E-45 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 PP4_RS24300 298bf2024f4999d15e62d66dd687e6a9 452 TIGRFAM TIGR03229 benzo_1_2_benA: benzoate 1,2-dioxygenase, large subunit 8 438 3.9E-275 T 22-04-2016 IPR017639 Benzoate 1,2-dioxygenase, large subunit PP4_RS24300 298bf2024f4999d15e62d66dd687e6a9 452 SUPERFAMILY SSF55961 164 446 4.08E-68 T 22-04-2016 PP4_RS24300 298bf2024f4999d15e62d66dd687e6a9 452 Pfam PF00355 Rieske [2Fe-2S] domain 45 129 1.3E-21 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 PP4_RS24300 298bf2024f4999d15e62d66dd687e6a9 452 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 189 211 6.6E-45 T 22-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 PP4_RS24300 298bf2024f4999d15e62d66dd687e6a9 452 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 81 101 6.6E-45 T 22-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 PP4_RS24300 298bf2024f4999d15e62d66dd687e6a9 452 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 60 75 6.6E-45 T 22-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 PP4_RS24300 298bf2024f4999d15e62d66dd687e6a9 452 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 30 55 6.6E-45 T 22-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 PP4_RS24300 298bf2024f4999d15e62d66dd687e6a9 452 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 148 174 6.6E-45 T 22-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 PP4_RS24300 298bf2024f4999d15e62d66dd687e6a9 452 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 102 122 6.6E-45 T 22-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 PP4_RS24300 298bf2024f4999d15e62d66dd687e6a9 452 ProSitePatterns PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 88 111 - T 22-04-2016 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site GO:0005506|GO:0016705|GO:0051537|GO:0055114 PP4_RS24300 298bf2024f4999d15e62d66dd687e6a9 452 PANTHER PTHR21266:SF30 1 379 5.8E-150 T 22-04-2016 PP4_RS24300 298bf2024f4999d15e62d66dd687e6a9 452 PANTHER PTHR21266 1 379 5.8E-150 T 22-04-2016 PP4_RS24300 298bf2024f4999d15e62d66dd687e6a9 452 Gene3D G3DSA:3.90.380.10 143 444 3.0E-89 T 22-04-2016 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 PP4_RS16990 fb182020015bec3b5176a641e6f6424a 810 SUPERFAMILY SSF56935 140 807 8.46E-127 T 22-04-2016 PP4_RS16990 fb182020015bec3b5176a641e6f6424a 810 SMART SM00965 49 100 2.6E-10 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS16990 fb182020015bec3b5176a641e6f6424a 810 PANTHER PTHR32552 134 808 9.0E-174 T 22-04-2016 PP4_RS16990 fb182020015bec3b5176a641e6f6424a 810 Pfam PF07715 TonB-dependent Receptor Plug Domain 143 245 3.1E-16 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS16990 fb182020015bec3b5176a641e6f6424a 810 PANTHER PTHR32552:SF37 134 808 9.0E-174 T 22-04-2016 PP4_RS16990 fb182020015bec3b5176a641e6f6424a 810 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 145 806 4.4E-109 T 22-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 PP4_RS16990 fb182020015bec3b5176a641e6f6424a 810 Gene3D G3DSA:2.170.130.10 122 252 3.1E-33 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS16990 fb182020015bec3b5176a641e6f6424a 810 Gene3D G3DSA:2.40.170.20 261 807 1.5E-132 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS16990 fb182020015bec3b5176a641e6f6424a 810 Pfam PF00593 TonB dependent receptor 568 807 9.4E-34 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS13190 2d797506b249355186cd956203c7d511 263 PANTHER PTHR11941 3 260 1.1E-104 T 22-04-2016 PP4_RS13190 2d797506b249355186cd956203c7d511 263 Gene3D G3DSA:1.10.12.10 205 263 3.7E-21 T 22-04-2016 IPR014748 Crontonase, C-terminal PP4_RS13190 2d797506b249355186cd956203c7d511 263 SUPERFAMILY SSF52096 1 263 1.9E-84 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS13190 2d797506b249355186cd956203c7d511 263 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 262 9.4E-62 T 22-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 PP4_RS13190 2d797506b249355186cd956203c7d511 263 TIGRFAM TIGR02280 PaaB1: phenylacetate degradation probable enoyl-CoA hydratase PaaB 6 263 2.5E-125 T 22-04-2016 IPR011968 Phenylacetate degradation probable enoyl-CoA hydratase PaaB GO:0010124 KEGG: 00360+5.3.3.18|UniPathway: UPA00930 PP4_RS13190 2d797506b249355186cd956203c7d511 263 PANTHER PTHR11941:SF76 3 260 1.1E-104 T 22-04-2016 PP4_RS13190 2d797506b249355186cd956203c7d511 263 Gene3D G3DSA:3.90.226.10 1 203 4.5E-66 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS03395 1aff0699123ec70f57bcb563c16c2ed0 228 PANTHER PTHR24322 9 129 3.1E-28 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03395 1aff0699123ec70f57bcb563c16c2ed0 228 PANTHER PTHR24322 150 182 3.1E-28 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03395 1aff0699123ec70f57bcb563c16c2ed0 228 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 73 84 3.5E-14 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03395 1aff0699123ec70f57bcb563c16c2ed0 228 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 6 23 3.5E-14 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03395 1aff0699123ec70f57bcb563c16c2ed0 228 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 3.5E-14 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03395 1aff0699123ec70f57bcb563c16c2ed0 228 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 121 137 3.5E-14 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03395 1aff0699123ec70f57bcb563c16c2ed0 228 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 3.5E-14 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03395 1aff0699123ec70f57bcb563c16c2ed0 228 PANTHER PTHR24322:SF540 9 129 3.1E-28 T 22-04-2016 PP4_RS03395 1aff0699123ec70f57bcb563c16c2ed0 228 PANTHER PTHR24322:SF540 150 182 3.1E-28 T 22-04-2016 PP4_RS03395 1aff0699123ec70f57bcb563c16c2ed0 228 SUPERFAMILY SSF51735 4 228 2.52E-59 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS03395 1aff0699123ec70f57bcb563c16c2ed0 228 Pfam PF00106 short chain dehydrogenase 5 191 5.8E-23 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03395 1aff0699123ec70f57bcb563c16c2ed0 228 Gene3D G3DSA:3.40.50.720 3 228 5.2E-45 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS09365 d1e41495b120c9eb2bf6f5e0535a443d 336 Pfam PF00107 Zinc-binding dehydrogenase 172 298 2.9E-28 T 22-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 PP4_RS09365 d1e41495b120c9eb2bf6f5e0535a443d 336 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 57 71 - T 22-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 PP4_RS09365 d1e41495b120c9eb2bf6f5e0535a443d 336 Gene3D G3DSA:3.40.50.720 166 282 1.4E-31 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS09365 d1e41495b120c9eb2bf6f5e0535a443d 336 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 25 131 2.6E-29 T 22-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 PP4_RS09365 d1e41495b120c9eb2bf6f5e0535a443d 336 SUPERFAMILY SSF51735 135 302 9.72E-39 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS09365 d1e41495b120c9eb2bf6f5e0535a443d 336 PANTHER PTHR11695 12 335 2.8E-145 T 22-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PP4_RS09365 d1e41495b120c9eb2bf6f5e0535a443d 336 SMART SM00829 9 332 1.7E-6 T 22-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 PP4_RS09365 d1e41495b120c9eb2bf6f5e0535a443d 336 PANTHER PTHR11695:SF498 12 335 2.8E-145 T 22-04-2016 PP4_RS09365 d1e41495b120c9eb2bf6f5e0535a443d 336 Gene3D G3DSA:3.90.180.10 1 165 1.9E-58 T 22-04-2016 IPR011032 GroES-like PP4_RS09365 d1e41495b120c9eb2bf6f5e0535a443d 336 SUPERFAMILY SSF50129 1 169 1.45E-46 T 22-04-2016 IPR011032 GroES-like PP4_RS01935 ad5d2f18b7b15d970a85d560c3ef2def 811 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 156 811 6.0E-128 T 22-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 PP4_RS01935 ad5d2f18b7b15d970a85d560c3ef2def 811 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 794 811 - T 22-04-2016 IPR010917 TonB-dependent receptor, conserved site PP4_RS01935 ad5d2f18b7b15d970a85d560c3ef2def 811 SUPERFAMILY SSF56935 146 811 4.58E-137 T 22-04-2016 PP4_RS01935 ad5d2f18b7b15d970a85d560c3ef2def 811 PANTHER PTHR32552 14 69 4.7E-174 T 22-04-2016 PP4_RS01935 ad5d2f18b7b15d970a85d560c3ef2def 811 PANTHER PTHR32552 146 811 4.7E-174 T 22-04-2016 PP4_RS01935 ad5d2f18b7b15d970a85d560c3ef2def 811 Pfam PF07715 TonB-dependent Receptor Plug Domain 155 253 9.9E-20 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS01935 ad5d2f18b7b15d970a85d560c3ef2def 811 Gene3D G3DSA:2.40.170.20 268 811 9.3E-163 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS01935 ad5d2f18b7b15d970a85d560c3ef2def 811 SMART SM00965 60 111 2.7E-6 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS01935 ad5d2f18b7b15d970a85d560c3ef2def 811 PANTHER PTHR32552:SF10 14 69 4.7E-174 T 22-04-2016 PP4_RS01935 ad5d2f18b7b15d970a85d560c3ef2def 811 PANTHER PTHR32552:SF10 146 811 4.7E-174 T 22-04-2016 PP4_RS01935 ad5d2f18b7b15d970a85d560c3ef2def 811 Gene3D G3DSA:2.170.130.10 135 261 4.4E-33 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS01935 ad5d2f18b7b15d970a85d560c3ef2def 811 Pfam PF00593 TonB dependent receptor 573 810 1.7E-34 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS20935 f8c33b8bc224930af430426f665f437f 235 PANTHER PTHR32125:SF4 9 226 3.8E-74 T 22-04-2016 PP4_RS20935 f8c33b8bc224930af430426f665f437f 235 TIGRFAM TIGR00453 ispD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 9 228 2.4E-73 T 22-04-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 PP4_RS20935 f8c33b8bc224930af430426f665f437f 235 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 10 224 7.5E-66 T 22-04-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 PP4_RS20935 f8c33b8bc224930af430426f665f437f 235 Gene3D G3DSA:3.90.550.10 7 230 2.6E-67 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS20935 f8c33b8bc224930af430426f665f437f 235 Hamap MF_00108 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [ispD]. 7 235 30.049 T 22-04-2016 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO:0008299|GO:0050518 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 PP4_RS20935 f8c33b8bc224930af430426f665f437f 235 PANTHER PTHR32125 9 226 3.8E-74 T 22-04-2016 PP4_RS20935 f8c33b8bc224930af430426f665f437f 235 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 107 114 - T 22-04-2016 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560|UniPathway: UPA00056 PP4_RS20935 f8c33b8bc224930af430426f665f437f 235 SUPERFAMILY SSF53448 8 231 1.76E-55 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS14180 c2b722a473c0d0ff7290b757d3372e11 444 Pfam PF00296 Luciferase-like monooxygenase 20 378 1.2E-64 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS14180 c2b722a473c0d0ff7290b757d3372e11 444 SUPERFAMILY SSF51679 3 430 1.19E-134 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS14180 c2b722a473c0d0ff7290b757d3372e11 444 PIRSF PIRSF000337 2 439 4.8E-149 T 22-04-2016 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 PP4_RS14180 c2b722a473c0d0ff7290b757d3372e11 444 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 8 424 1.8E-164 T 22-04-2016 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 PP4_RS14180 c2b722a473c0d0ff7290b757d3372e11 444 PANTHER PTHR30011 1 433 1.3E-196 T 22-04-2016 PP4_RS14180 c2b722a473c0d0ff7290b757d3372e11 444 PANTHER PTHR30011:SF22 1 433 1.3E-196 T 22-04-2016 PP4_RS14180 c2b722a473c0d0ff7290b757d3372e11 444 Gene3D G3DSA:3.20.20.30 345 430 1.8E-135 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS14180 c2b722a473c0d0ff7290b757d3372e11 444 Gene3D G3DSA:3.20.20.30 2 304 1.8E-135 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS20800 5a9825b59eb146f83d2ab4df8dc5935e 274 Hamap MF_01850 tRNA 2-thiocytidine biosynthesis protein TtcA [ttcA]. 1 264 57.679 T 22-04-2016 IPR012089 2-thiocytidine tRNA biosynthesis protein, TtcA GO:0008033 PP4_RS20800 5a9825b59eb146f83d2ab4df8dc5935e 274 Pfam PF01171 PP-loop family 34 197 1.7E-14 T 22-04-2016 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal PP4_RS20800 5a9825b59eb146f83d2ab4df8dc5935e 274 PANTHER PTHR11807 6 262 5.0E-116 T 22-04-2016 PP4_RS20800 5a9825b59eb146f83d2ab4df8dc5935e 274 SUPERFAMILY SSF52402 10 229 5.79E-56 T 22-04-2016 PP4_RS20800 5a9825b59eb146f83d2ab4df8dc5935e 274 Gene3D G3DSA:3.40.50.620 20 199 5.4E-22 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS20800 5a9825b59eb146f83d2ab4df8dc5935e 274 PIRSF PIRSF004976 3 266 1.1E-71 T 22-04-2016 IPR012089 2-thiocytidine tRNA biosynthesis protein, TtcA GO:0008033 PP4_RS20800 5a9825b59eb146f83d2ab4df8dc5935e 274 PANTHER PTHR11807:SF16 6 262 5.0E-116 T 22-04-2016 PP4_RS25655 0c7871dc3b2fc87ccfc7a8ff537ab49a 320 PANTHER PTHR30614:SF0 9 320 4.7E-125 T 22-04-2016 PP4_RS25655 0c7871dc3b2fc87ccfc7a8ff537ab49a 320 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 136 317 1.4E-25 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS25655 0c7871dc3b2fc87ccfc7a8ff537ab49a 320 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 117 211 2.3E-27 T 22-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PP4_RS25655 0c7871dc3b2fc87ccfc7a8ff537ab49a 320 PANTHER PTHR30614 9 320 4.7E-125 T 22-04-2016 PP4_RS25655 0c7871dc3b2fc87ccfc7a8ff537ab49a 320 Gene3D G3DSA:1.10.3720.10 116 317 1.8E-52 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS25655 0c7871dc3b2fc87ccfc7a8ff537ab49a 320 SUPERFAMILY SSF161098 118 302 4.06E-46 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS06575 4adbfc00975f417c0d913dea32dcd946 453 PANTHER PTHR24031 15 381 1.5E-152 T 22-04-2016 PP4_RS06575 4adbfc00975f417c0d913dea32dcd946 453 PANTHER PTHR24031:SF261 15 381 1.5E-152 T 22-04-2016 PP4_RS06575 4adbfc00975f417c0d913dea32dcd946 453 Pfam PF00270 DEAD/DEAH box helicase 37 200 6.7E-47 T 22-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 PP4_RS06575 4adbfc00975f417c0d913dea32dcd946 453 SMART SM00487 32 234 1.3E-51 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PP4_RS06575 4adbfc00975f417c0d913dea32dcd946 453 SUPERFAMILY SSF52540 85 372 1.06E-69 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS06575 4adbfc00975f417c0d913dea32dcd946 453 Pfam PF00271 Helicase conserved C-terminal domain 246 351 1.4E-29 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS06575 4adbfc00975f417c0d913dea32dcd946 453 Gene3D G3DSA:3.40.50.300 231 386 4.7E-50 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS06575 4adbfc00975f417c0d913dea32dcd946 453 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 163 171 - T 22-04-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site PP4_RS06575 4adbfc00975f417c0d913dea32dcd946 453 SMART SM00490 270 351 3.3E-33 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS06575 4adbfc00975f417c0d913dea32dcd946 453 Gene3D G3DSA:3.40.50.300 7 230 5.0E-72 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS07020 e0a6e1417e4d4cf6c960c6662d27181c 147 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 100 145 3.5E-14 T 22-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain PP4_RS07020 e0a6e1417e4d4cf6c960c6662d27181c 147 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 13 33 - T 22-04-2016 IPR019776 Flagellar basal body rod protein, conserved site PP4_RS07020 e0a6e1417e4d4cf6c960c6662d27181c 147 PANTHER PTHR30435:SF2 1 147 5.3E-67 T 22-04-2016 PP4_RS07020 e0a6e1417e4d4cf6c960c6662d27181c 147 Pfam PF00460 Flagella basal body rod protein 7 34 1.9E-8 T 22-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 PP4_RS07020 e0a6e1417e4d4cf6c960c6662d27181c 147 PANTHER PTHR30435 1 147 5.3E-67 T 22-04-2016 PP4_RS07020 e0a6e1417e4d4cf6c960c6662d27181c 147 TIGRFAM TIGR01395 FlgC: flagellar basal-body rod protein FlgC 5 147 4.1E-50 T 22-04-2016 IPR006299 Flagellar basal-body rod protein FlgC GO:0030694|GO:0071973 PP4_RS09430 1ddd786db30b70c2298097308a76d3da 358 SUPERFAMILY SSF51412 8 339 1.27E-68 T 22-04-2016 PP4_RS09430 1ddd786db30b70c2298097308a76d3da 358 Pfam PF03060 Nitronate monooxygenase 9 349 7.0E-77 T 22-04-2016 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 PP4_RS09430 1ddd786db30b70c2298097308a76d3da 358 Gene3D G3DSA:3.20.20.70 7 332 3.7E-66 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS09430 1ddd786db30b70c2298097308a76d3da 358 PANTHER PTHR32332:SF12 4 85 4.5E-124 T 22-04-2016 PP4_RS09430 1ddd786db30b70c2298097308a76d3da 358 PANTHER PTHR32332:SF12 114 358 4.5E-124 T 22-04-2016 PP4_RS09430 1ddd786db30b70c2298097308a76d3da 358 PANTHER PTHR32332 4 85 4.5E-124 T 22-04-2016 PP4_RS09430 1ddd786db30b70c2298097308a76d3da 358 PANTHER PTHR32332 114 358 4.5E-124 T 22-04-2016 PP4_RS07940 01805fe924a3367312f3fdb618d03d80 273 Gene3D G3DSA:3.40.190.10 35 117 1.3E-9 T 22-04-2016 PP4_RS07940 01805fe924a3367312f3fdb618d03d80 273 SUPERFAMILY SSF53850 31 255 1.28E-27 T 22-04-2016 PP4_RS07940 01805fe924a3367312f3fdb618d03d80 273 PANTHER PTHR35936 1 267 7.6E-13 T 22-04-2016 PP4_RS07940 01805fe924a3367312f3fdb618d03d80 273 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 35 248 4.5E-17 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS21925 ab86ec4c6a6d94a1c0a2e37c05b13d7b 174 Hamap MF_01914 Lipopolysaccharide export system protein LptA [lptA]. 4 170 25.283 T 22-04-2016 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 PP4_RS21925 ab86ec4c6a6d94a1c0a2e37c05b13d7b 174 Gene3D G3DSA:2.60.450.10 25 160 1.5E-33 T 22-04-2016 PP4_RS21925 ab86ec4c6a6d94a1c0a2e37c05b13d7b 174 TIGRFAM TIGR03002 outer_YhbN_LptA: lipopolysaccharide transport periplasmic protein LptA 24 170 1.2E-46 T 22-04-2016 IPR014340 Lipopolysaccharide export system protein LptA GO:0001530|GO:0015920|GO:0042597 PP4_RS21925 ab86ec4c6a6d94a1c0a2e37c05b13d7b 174 Pfam PF03968 OstA-like protein 35 146 7.8E-24 T 22-04-2016 IPR005653 Organic solvent tolerance-like, N-terminal PP4_RS21925 ab86ec4c6a6d94a1c0a2e37c05b13d7b 174 PANTHER PTHR36504 1 174 5.2E-37 T 22-04-2016 PP4_RS02245 d71cff9897ea0fee58ad6a3f357672c1 209 Gene3D G3DSA:1.10.10.10 121 209 2.0E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS02245 d71cff9897ea0fee58ad6a3f357672c1 209 Pfam PF00196 Bacterial regulatory proteins, luxR family 149 203 4.5E-19 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS02245 d71cff9897ea0fee58ad6a3f357672c1 209 PANTHER PTHR26402:SF598 2 205 1.8E-93 T 22-04-2016 PP4_RS02245 d71cff9897ea0fee58ad6a3f357672c1 209 SMART SM00421 146 203 2.5E-18 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS02245 d71cff9897ea0fee58ad6a3f357672c1 209 SUPERFAMILY SSF52172 2 132 6.97E-34 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS02245 d71cff9897ea0fee58ad6a3f357672c1 209 PANTHER PTHR26402 2 205 1.8E-93 T 22-04-2016 PP4_RS02245 d71cff9897ea0fee58ad6a3f357672c1 209 Pfam PF00072 Response regulator receiver domain 4 116 4.6E-28 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS02245 d71cff9897ea0fee58ad6a3f357672c1 209 SMART SM00448 2 115 1.1E-30 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS02245 d71cff9897ea0fee58ad6a3f357672c1 209 Gene3D G3DSA:3.40.50.2300 2 120 8.2E-37 T 22-04-2016 PP4_RS02245 d71cff9897ea0fee58ad6a3f357672c1 209 ProSitePatterns PS00622 LuxR-type HTH domain signature. 163 190 - T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS02245 d71cff9897ea0fee58ad6a3f357672c1 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 163 179 1.9E-10 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS02245 d71cff9897ea0fee58ad6a3f357672c1 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 149 163 1.9E-10 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS02245 d71cff9897ea0fee58ad6a3f357672c1 209 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 191 1.9E-10 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS02245 d71cff9897ea0fee58ad6a3f357672c1 209 SUPERFAMILY SSF46894 137 209 1.36E-18 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS07475 87a9b3e6bce16fe8e4cc45bfbac116eb 273 PANTHER PTHR11537 6 245 3.3E-94 T 22-04-2016 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 PP4_RS07475 87a9b3e6bce16fe8e4cc45bfbac116eb 273 PANTHER PTHR11537:SF137 6 245 3.3E-94 T 22-04-2016 PP4_RS07475 87a9b3e6bce16fe8e4cc45bfbac116eb 273 SUPERFAMILY SSF81324 24 234 1.33E-50 T 22-04-2016 PP4_RS07475 87a9b3e6bce16fe8e4cc45bfbac116eb 273 Pfam PF00520 Ion transport protein 26 236 1.3E-27 T 22-04-2016 IPR005821 Ion transport domain GO:0005216|GO:0006811|GO:0016020|GO:0055085 PP4_RS07475 87a9b3e6bce16fe8e4cc45bfbac116eb 273 Gene3D G3DSA:1.10.287.70 25 234 7.9E-50 T 22-04-2016 PP4_RS07475 87a9b3e6bce16fe8e4cc45bfbac116eb 273 PRINTS PR00169 Potassium channel signature 179 201 1.3E-31 T 22-04-2016 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 PP4_RS07475 87a9b3e6bce16fe8e4cc45bfbac116eb 273 PRINTS PR00169 Potassium channel signature 121 147 1.3E-31 T 22-04-2016 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 PP4_RS07475 87a9b3e6bce16fe8e4cc45bfbac116eb 273 PRINTS PR00169 Potassium channel signature 150 173 1.3E-31 T 22-04-2016 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 PP4_RS07475 87a9b3e6bce16fe8e4cc45bfbac116eb 273 PRINTS PR00169 Potassium channel signature 208 234 1.3E-31 T 22-04-2016 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 PP4_RS07475 87a9b3e6bce16fe8e4cc45bfbac116eb 273 PRINTS PR00169 Potassium channel signature 85 105 1.3E-31 T 22-04-2016 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 PP4_RS07475 87a9b3e6bce16fe8e4cc45bfbac116eb 273 PRINTS PR00169 Potassium channel signature 59 82 1.3E-31 T 22-04-2016 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 PP4_RS07475 87a9b3e6bce16fe8e4cc45bfbac116eb 273 PRINTS PR00169 Potassium channel signature 17 45 1.3E-31 T 22-04-2016 IPR028325 Voltage-gated potassium channel GO:0005249|GO:0006813|GO:0008076 PP4_RS16890 a30948c77fc70c45d99bc9b215c2beb9 302 SUPERFAMILY SSF53850 99 301 2.79E-31 T 22-04-2016 PP4_RS16890 a30948c77fc70c45d99bc9b215c2beb9 302 Gene3D G3DSA:1.10.10.10 8 87 3.5E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16890 a30948c77fc70c45d99bc9b215c2beb9 302 Pfam PF03466 LysR substrate binding domain 96 301 7.0E-30 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS16890 a30948c77fc70c45d99bc9b215c2beb9 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 38 48 2.5E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16890 a30948c77fc70c45d99bc9b215c2beb9 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 27 38 2.5E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16890 a30948c77fc70c45d99bc9b215c2beb9 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 48 59 2.5E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16890 a30948c77fc70c45d99bc9b215c2beb9 302 Gene3D G3DSA:3.40.190.10 198 266 6.5E-7 T 22-04-2016 PP4_RS16890 a30948c77fc70c45d99bc9b215c2beb9 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 71 6.1E-20 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16890 a30948c77fc70c45d99bc9b215c2beb9 302 PANTHER PTHR30126 10 301 3.6E-49 T 22-04-2016 PP4_RS16890 a30948c77fc70c45d99bc9b215c2beb9 302 Gene3D G3DSA:3.40.190.10 96 197 7.5E-13 T 22-04-2016 PP4_RS16890 a30948c77fc70c45d99bc9b215c2beb9 302 SUPERFAMILY SSF46785 8 88 3.91E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS11005 0b0ad87f697a4074c436bec87ba6afbc 434 PANTHER PTHR11730:SF17 1 434 3.1E-169 T 22-04-2016 PP4_RS11005 0b0ad87f697a4074c436bec87ba6afbc 434 TIGRFAM TIGR00836 amt: ammonium transporter 28 432 1.8E-130 T 22-04-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 PP4_RS11005 0b0ad87f697a4074c436bec87ba6afbc 434 Pfam PF00909 Ammonium Transporter Family 30 432 9.4E-113 T 22-04-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 PP4_RS11005 0b0ad87f697a4074c436bec87ba6afbc 434 ProSitePatterns PS01219 Ammonium transporters signature. 190 215 - T 22-04-2016 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 PP4_RS11005 0b0ad87f697a4074c436bec87ba6afbc 434 Gene3D G3DSA:1.10.3430.10 22 412 1.1E-130 T 22-04-2016 IPR029020 Ammonium/urea transporter PP4_RS11005 0b0ad87f697a4074c436bec87ba6afbc 434 PANTHER PTHR11730 1 434 3.1E-169 T 22-04-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 PP4_RS11005 0b0ad87f697a4074c436bec87ba6afbc 434 SUPERFAMILY SSF111352 24 412 8.76E-120 T 22-04-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 PP4_RS11425 7d9f01c98006769a88bd7c6d91c69a5b 801 Pfam PF07715 TonB-dependent Receptor Plug Domain 158 249 3.2E-14 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS11425 7d9f01c98006769a88bd7c6d91c69a5b 801 SMART SM00965 60 111 1.9E-13 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS11425 7d9f01c98006769a88bd7c6d91c69a5b 801 PANTHER PTHR32552 149 801 1.1E-178 T 22-04-2016 PP4_RS11425 7d9f01c98006769a88bd7c6d91c69a5b 801 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 159 801 5.9E-101 T 22-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 PP4_RS11425 7d9f01c98006769a88bd7c6d91c69a5b 801 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 784 801 - T 22-04-2016 IPR010917 TonB-dependent receptor, conserved site PP4_RS11425 7d9f01c98006769a88bd7c6d91c69a5b 801 Pfam PF00593 TonB dependent receptor 561 799 6.3E-26 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS11425 7d9f01c98006769a88bd7c6d91c69a5b 801 Gene3D G3DSA:2.170.130.10 153 270 1.3E-23 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS11425 7d9f01c98006769a88bd7c6d91c69a5b 801 PANTHER PTHR32552:SF14 149 801 1.1E-178 T 22-04-2016 IPR030149 TonB-dependent siderophore receptor FcuA/FatA GO:0004872|GO:0005506|GO:0009279|GO:0015891|GO:0016021 PP4_RS11425 7d9f01c98006769a88bd7c6d91c69a5b 801 Gene3D G3DSA:2.40.170.20 273 801 7.5E-99 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS11425 7d9f01c98006769a88bd7c6d91c69a5b 801 SUPERFAMILY SSF56935 153 801 7.22E-103 T 22-04-2016 PP4_RS11425 7d9f01c98006769a88bd7c6d91c69a5b 801 Pfam PF07660 Secretin and TonB N terminus short domain 60 110 1.7E-7 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS18690 cedd9b6cda605c978346c6f250f78922 715 Hamap MF_01621 Fatty acid oxidation complex subunit alpha [fadB]. 1 715 52.559 T 22-04-2016 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 PP4_RS18690 cedd9b6cda605c978346c6f250f78922 715 Gene3D G3DSA:3.40.50.720 310 498 2.9E-58 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS18690 cedd9b6cda605c978346c6f250f78922 715 PANTHER PTHR23309 8 714 0.0 T 22-04-2016 PP4_RS18690 cedd9b6cda605c978346c6f250f78922 715 Gene3D G3DSA:3.90.226.10 5 208 1.7E-57 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS18690 cedd9b6cda605c978346c6f250f78922 715 TIGRFAM TIGR02437 FadB: fatty oxidation complex, alpha subunit FadB 1 714 0.0 T 22-04-2016 IPR012799 Fatty oxidation complex, alpha subunit FadB GO:0003857|GO:0004165|GO:0004300|GO:0008692|GO:0009062|GO:0036125|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35+5.3.3.8|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5137|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6837|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-7291|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 PP4_RS18690 cedd9b6cda605c978346c6f250f78922 715 SUPERFAMILY SSF48179 622 714 1.02E-23 T 22-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PP4_RS18690 cedd9b6cda605c978346c6f250f78922 715 SUPERFAMILY SSF52096 2 308 9.32E-67 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS18690 cedd9b6cda605c978346c6f250f78922 715 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 497 592 7.4E-28 T 22-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 PP4_RS18690 cedd9b6cda605c978346c6f250f78922 715 PANTHER PTHR23309:SF18 8 714 0.0 T 22-04-2016 PP4_RS18690 cedd9b6cda605c978346c6f250f78922 715 Gene3D G3DSA:1.10.1040.10 499 593 4.6E-23 T 22-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PP4_RS18690 cedd9b6cda605c978346c6f250f78922 715 Gene3D G3DSA:1.10.1040.10 633 712 7.6E-15 T 22-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PP4_RS18690 cedd9b6cda605c978346c6f250f78922 715 ProSitePatterns PS00067 3-hydroxyacyl-CoA dehydrogenase signature. 494 518 - T 22-04-2016 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+5.1.2.3+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 PP4_RS18690 cedd9b6cda605c978346c6f250f78922 715 SUPERFAMILY SSF51735 314 496 5.87E-57 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS18690 cedd9b6cda605c978346c6f250f78922 715 SUPERFAMILY SSF48179 496 607 3.57E-30 T 22-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PP4_RS18690 cedd9b6cda605c978346c6f250f78922 715 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 107 127 - T 22-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 PP4_RS18690 cedd9b6cda605c978346c6f250f78922 715 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 317 495 5.1E-62 T 22-04-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 PP4_RS18690 cedd9b6cda605c978346c6f250f78922 715 Pfam PF00378 Enoyl-CoA hydratase/isomerase 14 209 7.8E-40 T 22-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 PP4_RS24430 e112cec18efdc7cd5777c3e6892dd36c 550 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 290 444 7.6E-26 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS24430 e112cec18efdc7cd5777c3e6892dd36c 550 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 182 279 1.1E-13 T 22-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 PP4_RS24430 e112cec18efdc7cd5777c3e6892dd36c 550 PANTHER PTHR10909 33 464 2.5E-201 T 22-04-2016 PP4_RS24430 e112cec18efdc7cd5777c3e6892dd36c 550 SUPERFAMILY SSF56645 72 299 1.07E-39 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 PP4_RS24430 e112cec18efdc7cd5777c3e6892dd36c 550 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 403 422 - T 22-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 PP4_RS24430 e112cec18efdc7cd5777c3e6892dd36c 550 Gene3D G3DSA:2.40.110.10 182 281 7.0E-19 T 22-04-2016 PP4_RS24430 e112cec18efdc7cd5777c3e6892dd36c 550 SUPERFAMILY SSF47203 295 447 9.83E-39 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS24430 e112cec18efdc7cd5777c3e6892dd36c 550 PANTHER PTHR10909:SF289 33 464 2.5E-201 T 22-04-2016 PP4_RS24430 e112cec18efdc7cd5777c3e6892dd36c 550 Gene3D G3DSA:1.20.140.10 282 449 7.0E-37 T 22-04-2016 PP4_RS15565 2a08dd823e91b0030eb9e5d76e4ac5f1 713 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 51 537 2.2E-146 T 22-04-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 PP4_RS15565 2a08dd823e91b0030eb9e5d76e4ac5f1 713 PANTHER PTHR30047 12 708 6.7E-228 T 22-04-2016 PP4_RS15565 2a08dd823e91b0030eb9e5d76e4ac5f1 713 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 89 537 2.5E-129 T 22-04-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 PP4_RS15565 2a08dd823e91b0030eb9e5d76e4ac5f1 713 PANTHER PTHR30047:SF6 12 708 6.7E-228 T 22-04-2016 PP4_RS13645 8956c25b81f86ee31cfd745895cdaf73 444 PANTHER PTHR23505 3 421 3.9E-68 T 22-04-2016 PP4_RS13645 8956c25b81f86ee31cfd745895cdaf73 444 Gene3D G3DSA:1.20.1250.20 12 193 3.6E-42 T 22-04-2016 PP4_RS13645 8956c25b81f86ee31cfd745895cdaf73 444 Gene3D G3DSA:1.20.1250.20 215 427 8.9E-14 T 22-04-2016 PP4_RS13645 8956c25b81f86ee31cfd745895cdaf73 444 SUPERFAMILY SSF103473 4 426 5.89E-65 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS13645 8956c25b81f86ee31cfd745895cdaf73 444 Pfam PF07690 Major Facilitator Superfamily 19 379 8.4E-50 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS16725 bf5a955944d2265d9babc3056401a4ac 591 SMART SM00382 370 565 7.0E-14 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS16725 bf5a955944d2265d9babc3056401a4ac 591 ProSitePatterns PS00211 ABC transporters family signature. 487 501 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS16725 bf5a955944d2265d9babc3056401a4ac 591 Gene3D G3DSA:1.20.1560.10 9 328 2.8E-56 T 22-04-2016 PP4_RS16725 bf5a955944d2265d9babc3056401a4ac 591 PANTHER PTHR24221 4 340 3.7E-124 T 22-04-2016 PP4_RS16725 bf5a955944d2265d9babc3056401a4ac 591 PANTHER PTHR24221 356 585 3.7E-124 T 22-04-2016 PP4_RS16725 bf5a955944d2265d9babc3056401a4ac 591 Pfam PF00664 ABC transporter transmembrane region 24 297 4.4E-31 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PP4_RS16725 bf5a955944d2265d9babc3056401a4ac 591 SUPERFAMILY SSF52540 338 587 2.85E-66 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS16725 bf5a955944d2265d9babc3056401a4ac 591 Gene3D G3DSA:3.40.50.300 345 587 9.1E-63 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS16725 bf5a955944d2265d9babc3056401a4ac 591 SUPERFAMILY SSF90123 9 328 2.62E-58 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PP4_RS16725 bf5a955944d2265d9babc3056401a4ac 591 Pfam PF00005 ABC transporter 361 515 1.2E-26 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS25215 f8fd2271f940083194ee68ce18a02c9d 257 SUPERFAMILY SSF53448 7 140 2.81E-11 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS25215 f8fd2271f940083194ee68ce18a02c9d 257 Gene3D G3DSA:3.90.550.10 9 119 3.0E-4 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS25670 faa82b4305627f411f1ee2ea7983fcc1 559 SUPERFAMILY SSF81296 392 490 4.9E-22 T 22-04-2016 IPR014756 Immunoglobulin E-set PP4_RS25670 faa82b4305627f411f1ee2ea7983fcc1 559 PANTHER PTHR30504 3 488 0.0 T 22-04-2016 PP4_RS25670 faa82b4305627f411f1ee2ea7983fcc1 559 Pfam PF04349 Periplasmic glucan biosynthesis protein, MdoG 18 489 1.4E-191 T 22-04-2016 IPR007444 Glucan biosynthesis, periplasmic, MdoG C-terminal GO:0016051|GO:0042597 UniPathway: UPA00637 PP4_RS25670 faa82b4305627f411f1ee2ea7983fcc1 559 PIRSF PIRSF006281 1 559 2.2E-245 T 22-04-2016 IPR014438 Glucan biosynthesis, periplasmic, MdoG/D UniPathway: UPA00637 PP4_RS25670 faa82b4305627f411f1ee2ea7983fcc1 559 Gene3D G3DSA:2.60.40.10 393 489 1.9E-29 T 22-04-2016 IPR013783 Immunoglobulin-like fold PP4_RS25670 faa82b4305627f411f1ee2ea7983fcc1 559 Gene3D G3DSA:2.70.98.10 17 388 3.3E-174 T 22-04-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 PP4_RS25670 faa82b4305627f411f1ee2ea7983fcc1 559 SUPERFAMILY SSF74650 18 388 6.91E-166 T 22-04-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 PP4_RS25670 faa82b4305627f411f1ee2ea7983fcc1 559 Hamap MF_01069 Glucans biosynthesis protein G [mdoG]. 1 557 63.79 T 22-04-2016 IPR023704 Glucan biosynthesis protein G UniPathway: UPA00637 PP4_RS25670 faa82b4305627f411f1ee2ea7983fcc1 559 PANTHER PTHR30504:SF4 3 488 0.0 T 22-04-2016 PP4_RS23090 48f435f8d392b55558632f9692e512a8 408 ProSitePatterns PS00905 GTP1/OBG family signature. 213 226 - T 22-04-2016 IPR006074 GTP1/OBG, conserved site GO:0005525 PP4_RS23090 48f435f8d392b55558632f9692e512a8 408 PANTHER PTHR11702 1 355 3.0E-174 T 22-04-2016 PP4_RS23090 48f435f8d392b55558632f9692e512a8 408 PANTHER PTHR11702 373 396 3.0E-174 T 22-04-2016 PP4_RS23090 48f435f8d392b55558632f9692e512a8 408 PANTHER PTHR11702:SF3 1 355 3.0E-174 T 22-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 PP4_RS23090 48f435f8d392b55558632f9692e512a8 408 PANTHER PTHR11702:SF3 373 396 3.0E-174 T 22-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 PP4_RS23090 48f435f8d392b55558632f9692e512a8 408 SUPERFAMILY SSF52540 151 334 1.61E-46 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23090 48f435f8d392b55558632f9692e512a8 408 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 332 2.3E-146 T 22-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 PP4_RS23090 48f435f8d392b55558632f9692e512a8 408 SUPERFAMILY SSF82051 2 158 1.09E-56 T 22-04-2016 IPR006169 GTP1/OBG domain GO:0005525 PP4_RS23090 48f435f8d392b55558632f9692e512a8 408 Gene3D G3DSA:3.40.50.300 160 335 1.8E-47 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23090 48f435f8d392b55558632f9692e512a8 408 Gene3D G3DSA:2.70.210.12 2 156 2.3E-59 T 22-04-2016 IPR006169 GTP1/OBG domain GO:0005525 PP4_RS23090 48f435f8d392b55558632f9692e512a8 408 Pfam PF01018 GTP1/OBG 3 158 2.4E-61 T 22-04-2016 IPR006169 GTP1/OBG domain GO:0005525 PP4_RS23090 48f435f8d392b55558632f9692e512a8 408 Hamap MF_01454 GTPase Obg [obg]. 2 333 47.455 T 22-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 PP4_RS23090 48f435f8d392b55558632f9692e512a8 408 Pfam PF01926 50S ribosome-binding GTPase 161 284 4.4E-22 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 PP4_RS23090 48f435f8d392b55558632f9692e512a8 408 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 9.9E-34 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 PP4_RS23090 48f435f8d392b55558632f9692e512a8 408 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 9.9E-34 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 PP4_RS23090 48f435f8d392b55558632f9692e512a8 408 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 211 226 9.9E-34 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 PP4_RS23090 48f435f8d392b55558632f9692e512a8 408 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 228 246 9.9E-34 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 PP4_RS23090 48f435f8d392b55558632f9692e512a8 408 PIRSF PIRSF002401 1 379 2.3E-136 T 22-04-2016 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 PP4_RS05345 95232780b8575f3b1321282b610365fc 813 Gene3D G3DSA:1.10.439.10 37 206 1.7E-47 T 22-04-2016 IPR023343 Penicillin amidase type, domain1 GO:0016811 PP4_RS05345 95232780b8575f3b1321282b610365fc 813 PANTHER PTHR34218:SF2 35 813 5.3E-188 T 22-04-2016 PP4_RS05345 95232780b8575f3b1321282b610365fc 813 SUPERFAMILY SSF56235 49 804 8.49E-179 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PP4_RS05345 95232780b8575f3b1321282b610365fc 813 Gene3D G3DSA:3.60.20.10 262 333 2.1E-72 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PP4_RS05345 95232780b8575f3b1321282b610365fc 813 Gene3D G3DSA:3.60.20.10 410 657 2.1E-72 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PP4_RS05345 95232780b8575f3b1321282b610365fc 813 Pfam PF01804 Penicillin amidase 53 798 1.9E-169 T 22-04-2016 IPR002692 Penicillin/cephalosporin acylase GO:0016787|GO:0017000 PP4_RS05345 95232780b8575f3b1321282b610365fc 813 Gene3D G3DSA:2.30.120.10 334 398 6.7E-17 T 22-04-2016 PP4_RS05345 95232780b8575f3b1321282b610365fc 813 PANTHER PTHR34218 35 813 5.3E-188 T 22-04-2016 PP4_RS05345 95232780b8575f3b1321282b610365fc 813 PIRSF PIRSF001227 11 806 3.3E-137 T 22-04-2016 IPR014395 Penicillin acylase GO:0016811 PP4_RS17670 54e1c32cbc067b4e1934cd0e28729a2a 437 PANTHER PTHR30560 1 429 1.6E-131 T 22-04-2016 PP4_RS17670 54e1c32cbc067b4e1934cd0e28729a2a 437 TIGRFAM TIGR00115 tig: trigger factor 11 410 1.7E-141 T 22-04-2016 IPR005215 Trigger factor GO:0015031 PP4_RS17670 54e1c32cbc067b4e1934cd0e28729a2a 437 PANTHER PTHR30560:SF3 1 429 1.6E-131 T 22-04-2016 PP4_RS17670 54e1c32cbc067b4e1934cd0e28729a2a 437 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 156 236 1.5E-15 T 22-04-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 PP4_RS17670 54e1c32cbc067b4e1934cd0e28729a2a 437 SUPERFAMILY SSF109998 248 428 9.42E-50 T 22-04-2016 IPR027304 Trigger factor/SurA domain PP4_RS17670 54e1c32cbc067b4e1934cd0e28729a2a 437 Hamap MF_00303 Trigger factor [tig]. 1 417 21.502 T 22-04-2016 IPR005215 Trigger factor GO:0015031 PP4_RS17670 54e1c32cbc067b4e1934cd0e28729a2a 437 SUPERFAMILY SSF54534 89 240 1.43E-36 T 22-04-2016 PP4_RS17670 54e1c32cbc067b4e1934cd0e28729a2a 437 Gene3D G3DSA:1.10.3120.10 214 388 2.4E-62 T 22-04-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 PP4_RS17670 54e1c32cbc067b4e1934cd0e28729a2a 437 Pfam PF05697 Bacterial trigger factor protein (TF) 1 142 3.7E-40 T 22-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 PP4_RS17670 54e1c32cbc067b4e1934cd0e28729a2a 437 Gene3D G3DSA:3.30.70.1050 1 117 2.3E-39 T 22-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 PP4_RS17670 54e1c32cbc067b4e1934cd0e28729a2a 437 PIRSF PIRSF003095 1 432 3.7E-128 T 22-04-2016 IPR005215 Trigger factor GO:0015031 PP4_RS17670 54e1c32cbc067b4e1934cd0e28729a2a 437 Gene3D G3DSA:3.10.50.40 155 213 2.1E-12 T 22-04-2016 PP4_RS17670 54e1c32cbc067b4e1934cd0e28729a2a 437 SUPERFAMILY SSF102735 1 130 7.46E-39 T 22-04-2016 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 PP4_RS17670 54e1c32cbc067b4e1934cd0e28729a2a 437 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 262 411 4.3E-38 T 22-04-2016 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 PP4_RS08865 99e8159c82a233109aa13f7a8faf1742 88 PIRSF PIRSF002599 1 80 3.9E-22 T 22-04-2016 IPR012156 Cold shock, CspA GO:0003676 PP4_RS08865 99e8159c82a233109aa13f7a8faf1742 88 TIGRFAM TIGR02381 cspD: cold shock domain protein CspD 1 67 7.5E-40 T 22-04-2016 IPR012751 CspD, cold shock GO:0003676|GO:0005737|GO:0006355|GO:0006950 PP4_RS08865 99e8159c82a233109aa13f7a8faf1742 88 Gene3D G3DSA:2.40.50.140 1 65 2.3E-27 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS08865 99e8159c82a233109aa13f7a8faf1742 88 PANTHER PTHR11544:SF52 1 74 8.4E-36 T 22-04-2016 PP4_RS08865 99e8159c82a233109aa13f7a8faf1742 88 PRINTS PR00050 Cold shock protein signature 25 34 2.8E-16 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PP4_RS08865 99e8159c82a233109aa13f7a8faf1742 88 PRINTS PR00050 Cold shock protein signature 40 58 2.8E-16 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PP4_RS08865 99e8159c82a233109aa13f7a8faf1742 88 PRINTS PR00050 Cold shock protein signature 4 19 2.8E-16 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PP4_RS08865 99e8159c82a233109aa13f7a8faf1742 88 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 1.4E-26 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PP4_RS08865 99e8159c82a233109aa13f7a8faf1742 88 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 34 - T 22-04-2016 IPR019844 Cold-shock conserved site PP4_RS08865 99e8159c82a233109aa13f7a8faf1742 88 PANTHER PTHR11544 1 74 8.4E-36 T 22-04-2016 PP4_RS08865 99e8159c82a233109aa13f7a8faf1742 88 SUPERFAMILY SSF50249 1 65 1.37E-21 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS08865 99e8159c82a233109aa13f7a8faf1742 88 SMART SM00357 3 67 9.7E-24 T 22-04-2016 IPR011129 Cold shock protein GO:0003676 PP4_RS23435 c803fb4cf00803a04b9d40644027c3d7 207 PANTHER PTHR30462 4 207 1.6E-60 T 22-04-2016 PP4_RS23435 c803fb4cf00803a04b9d40644027c3d7 207 Pfam PF04403 Paraquat-inducible protein A 46 200 3.0E-56 T 22-04-2016 IPR007498 Paraquat-inducible protein A PP4_RS23435 c803fb4cf00803a04b9d40644027c3d7 207 PANTHER PTHR30462:SF3 4 207 1.6E-60 T 22-04-2016 PP4_RS11950 622e02bbe656b81a63c31dec43a4ceef 310 SUPERFAMILY SSF46785 5 108 2.59E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS11950 622e02bbe656b81a63c31dec43a4ceef 310 SUPERFAMILY SSF53850 90 294 6.15E-36 T 22-04-2016 PP4_RS11950 622e02bbe656b81a63c31dec43a4ceef 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 2.2E-17 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS11950 622e02bbe656b81a63c31dec43a4ceef 310 Gene3D G3DSA:3.40.190.10 178 257 1.0E-18 T 22-04-2016 PP4_RS11950 622e02bbe656b81a63c31dec43a4ceef 310 PANTHER PTHR30126 1 306 7.1E-113 T 22-04-2016 PP4_RS11950 622e02bbe656b81a63c31dec43a4ceef 310 Gene3D G3DSA:1.10.10.10 4 85 2.6E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS11950 622e02bbe656b81a63c31dec43a4ceef 310 Pfam PF03466 LysR substrate binding domain 90 292 2.5E-33 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS11950 622e02bbe656b81a63c31dec43a4ceef 310 Gene3D G3DSA:3.40.190.10 92 177 6.5E-17 T 22-04-2016 PP4_RS11950 622e02bbe656b81a63c31dec43a4ceef 310 PANTHER PTHR30126:SF26 1 306 7.1E-113 T 22-04-2016 PP4_RS09590 b125fe812e18fb6462ce0d892def50d8 327 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 259 304 - T 22-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PP4_RS09590 b125fe812e18fb6462ce0d892def50d8 327 Pfam PF14525 AraC-binding-like domain 14 185 1.6E-14 T 22-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PP4_RS09590 b125fe812e18fb6462ce0d892def50d8 327 PANTHER PTHR11019 70 316 6.9E-35 T 22-04-2016 PP4_RS09590 b125fe812e18fb6462ce0d892def50d8 327 Pfam PF12833 Helix-turn-helix domain 229 309 2.9E-21 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS09590 b125fe812e18fb6462ce0d892def50d8 327 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 292 308 1.4E-6 T 22-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PP4_RS09590 b125fe812e18fb6462ce0d892def50d8 327 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 277 292 1.4E-6 T 22-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PP4_RS09590 b125fe812e18fb6462ce0d892def50d8 327 PANTHER PTHR11019:SF50 70 316 6.9E-35 T 22-04-2016 PP4_RS09590 b125fe812e18fb6462ce0d892def50d8 327 SUPERFAMILY SSF46689 259 312 5.82E-10 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS09590 b125fe812e18fb6462ce0d892def50d8 327 Gene3D G3DSA:1.10.10.60 211 258 1.2E-6 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS09590 b125fe812e18fb6462ce0d892def50d8 327 Gene3D G3DSA:1.10.10.60 259 311 5.3E-16 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS09590 b125fe812e18fb6462ce0d892def50d8 327 SMART SM00342 223 308 1.2E-26 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS01270 8a5273baa327d31ba0ec41b01ee911e1 667 ProSitePatterns PS01303 BCCT family of transporters signature. 320 329 - T 22-04-2016 IPR018093 BCCT transporter, conserved site GO:0005215|GO:0006810|GO:0016020 PP4_RS01270 8a5273baa327d31ba0ec41b01ee911e1 667 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 57 503 1.3E-153 T 22-04-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 PP4_RS01270 8a5273baa327d31ba0ec41b01ee911e1 667 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 19 504 3.5E-176 T 22-04-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 PP4_RS01270 8a5273baa327d31ba0ec41b01ee911e1 667 PANTHER PTHR30047:SF6 12 667 0.0 T 22-04-2016 PP4_RS01270 8a5273baa327d31ba0ec41b01ee911e1 667 PANTHER PTHR30047 12 667 0.0 T 22-04-2016 PP4_RS25370 86360dd37c50a21e99d71af31ab00524 565 SMART SM00532 29 426 8.6E-49 T 22-04-2016 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 PP4_RS25370 86360dd37c50a21e99d71af31ab00524 565 Gene3D G3DSA:1.10.287.610 24 75 1.4E-7 T 22-04-2016 PP4_RS25370 86360dd37c50a21e99d71af31ab00524 565 Gene3D G3DSA:1.10.150.20 491 554 2.9E-6 T 22-04-2016 PP4_RS25370 86360dd37c50a21e99d71af31ab00524 565 Gene3D G3DSA:1.10.150.20 413 479 5.3E-6 T 22-04-2016 PP4_RS25370 86360dd37c50a21e99d71af31ab00524 565 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 29 306 4.2E-26 T 22-04-2016 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 PP4_RS25370 86360dd37c50a21e99d71af31ab00524 565 SUPERFAMILY SSF47781 396 554 6.23E-29 T 22-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 PP4_RS25370 86360dd37c50a21e99d71af31ab00524 565 PANTHER PTHR23389 16 496 1.5E-124 T 22-04-2016 PP4_RS25370 86360dd37c50a21e99d71af31ab00524 565 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 312 384 1.9E-19 T 22-04-2016 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 PP4_RS25370 86360dd37c50a21e99d71af31ab00524 565 SUPERFAMILY SSF50249 309 386 3.26E-19 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS25370 86360dd37c50a21e99d71af31ab00524 565 Gene3D G3DSA:3.30.470.30 128 245 9.6E-20 T 22-04-2016 PP4_RS25370 86360dd37c50a21e99d71af31ab00524 565 Gene3D G3DSA:2.40.50.140 310 381 2.9E-20 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS25370 86360dd37c50a21e99d71af31ab00524 565 Hamap MF_01587 DNA ligase B [ligB]. 2 556 53.301 T 22-04-2016 IPR020923 DNA ligase B GO:0003911|GO:0006259 PP4_RS25370 86360dd37c50a21e99d71af31ab00524 565 SUPERFAMILY SSF56091 24 306 2.24E-69 T 22-04-2016 PP4_RS25370 86360dd37c50a21e99d71af31ab00524 565 PANTHER PTHR23389:SF7 16 496 1.5E-124 T 22-04-2016 PP4_RS25370 86360dd37c50a21e99d71af31ab00524 565 PIRSF PIRSF001604 24 562 3.2E-63 T 22-04-2016 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 PP4_RS22325 44e2b5162f2dd90eeafaf65f188fd527 163 SUPERFAMILY SSF46785 2 131 5.63E-36 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS22325 44e2b5162f2dd90eeafaf65f188fd527 163 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 49 67 - T 22-04-2016 IPR030489 Transcription regulator Rrf2-type, conserved site PP4_RS22325 44e2b5162f2dd90eeafaf65f188fd527 163 TIGRFAM TIGR02010 IscR: iron-sulfur cluster assembly transcription factor IscR 1 134 4.0E-67 T 22-04-2016 IPR010242 Transcription factor HTH, IscR GO:0003690|GO:0003700|GO:0006355 PP4_RS22325 44e2b5162f2dd90eeafaf65f188fd527 163 PANTHER PTHR33221 2 152 7.2E-71 T 22-04-2016 PP4_RS22325 44e2b5162f2dd90eeafaf65f188fd527 163 PANTHER PTHR33221:SF1 2 152 7.2E-71 T 22-04-2016 PP4_RS22325 44e2b5162f2dd90eeafaf65f188fd527 163 Pfam PF02082 Transcriptional regulator 1 83 5.1E-28 T 22-04-2016 IPR000944 Transcription regulator Rrf2-type PP4_RS22325 44e2b5162f2dd90eeafaf65f188fd527 163 Gene3D G3DSA:1.10.10.10 1 134 1.6E-31 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS22325 44e2b5162f2dd90eeafaf65f188fd527 163 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 130 1.1E-47 T 22-04-2016 IPR000944 Transcription regulator Rrf2-type PP4_RS13875 b862ed25b70d01c5599cd297c3a10632 547 PANTHER PTHR18968:SF129 3 543 3.4E-298 T 22-04-2016 PP4_RS13875 b862ed25b70d01c5599cd297c3a10632 547 Gene3D G3DSA:3.40.50.1220 178 331 2.3E-39 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain PP4_RS13875 b862ed25b70d01c5599cd297c3a10632 547 SUPERFAMILY SSF52467 154 335 4.09E-40 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain PP4_RS13875 b862ed25b70d01c5599cd297c3a10632 547 PANTHER PTHR18968 3 543 3.4E-298 T 22-04-2016 PP4_RS13875 b862ed25b70d01c5599cd297c3a10632 547 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 187 319 3.6E-32 T 22-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 PP4_RS13875 b862ed25b70d01c5599cd297c3a10632 547 SUPERFAMILY SSF52518 3 179 1.13E-47 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS13875 b862ed25b70d01c5599cd297c3a10632 547 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 3 169 3.5E-52 T 22-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 PP4_RS13875 b862ed25b70d01c5599cd297c3a10632 547 SUPERFAMILY SSF52518 356 535 6.97E-59 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS13875 b862ed25b70d01c5599cd297c3a10632 547 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 379 525 1.9E-39 T 22-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 PP4_RS13875 b862ed25b70d01c5599cd297c3a10632 547 Gene3D G3DSA:3.40.50.970 352 538 7.5E-58 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS13875 b862ed25b70d01c5599cd297c3a10632 547 Gene3D G3DSA:3.40.50.970 3 176 2.8E-65 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS13875 b862ed25b70d01c5599cd297c3a10632 547 ProSitePatterns PS00187 Thiamine pyrophosphate enzymes signature. 416 435 - T 22-04-2016 IPR000399 TPP-binding enzyme, conserved site GO:0000287|GO:0030976 PP4_RS04475 db5575ee605c834ba1be74a7c8456fcb 395 Gene3D G3DSA:1.20.1250.20 207 382 3.5E-7 T 22-04-2016 PP4_RS04475 db5575ee605c834ba1be74a7c8456fcb 395 PANTHER PTHR23502:SF19 15 371 1.9E-59 T 22-04-2016 PP4_RS04475 db5575ee605c834ba1be74a7c8456fcb 395 SUPERFAMILY SSF103473 14 385 7.85E-48 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS04475 db5575ee605c834ba1be74a7c8456fcb 395 PANTHER PTHR23502 15 371 1.9E-59 T 22-04-2016 PP4_RS04475 db5575ee605c834ba1be74a7c8456fcb 395 Pfam PF07690 Major Facilitator Superfamily 22 354 3.1E-38 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS04475 db5575ee605c834ba1be74a7c8456fcb 395 Gene3D G3DSA:1.20.1250.20 15 190 1.1E-28 T 22-04-2016 PP4_RS04235 eda12c2991125766208e5bd348871210 207 Gene3D G3DSA:1.20.1050.10 102 199 6.3E-10 T 22-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like PP4_RS04235 eda12c2991125766208e5bd348871210 207 SUPERFAMILY SSF52833 10 104 7.61E-23 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS04235 eda12c2991125766208e5bd348871210 207 Pfam PF13417 Glutathione S-transferase, N-terminal domain 10 83 1.5E-18 T 22-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 PP4_RS04235 eda12c2991125766208e5bd348871210 207 PANTHER PTHR11260 3 205 2.0E-107 T 22-04-2016 PP4_RS04235 eda12c2991125766208e5bd348871210 207 Pfam PF00043 Glutathione S-transferase, C-terminal domain 118 191 2.5E-5 T 22-04-2016 IPR004046 Glutathione S-transferase, C-terminal PP4_RS04235 eda12c2991125766208e5bd348871210 207 Gene3D G3DSA:3.40.30.10 5 101 4.7E-28 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS04235 eda12c2991125766208e5bd348871210 207 PANTHER PTHR11260:SF44 3 205 2.0E-107 T 22-04-2016 PP4_RS04235 eda12c2991125766208e5bd348871210 207 SUPERFAMILY SSF47616 78 205 4.06E-22 T 22-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like PP4_RS12740 f7f7b773927bd0623d11e6e2ed7a26d0 458 PANTHER PTHR30182 1 453 8.4E-228 T 22-04-2016 PP4_RS12740 f7f7b773927bd0623d11e6e2ed7a26d0 458 SUPERFAMILY SSF143548 17 156 6.02E-46 T 22-04-2016 IPR029009 Allosteric substrate binding domain PP4_RS12740 f7f7b773927bd0623d11e6e2ed7a26d0 458 Pfam PF03315 Serine dehydratase beta chain 4 155 4.8E-57 T 22-04-2016 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17|UniPathway: UPA00138 PP4_RS12740 f7f7b773927bd0623d11e6e2ed7a26d0 458 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 3 454 1.9E-209 T 22-04-2016 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17|UniPathway: UPA00138 PP4_RS12740 f7f7b773927bd0623d11e6e2ed7a26d0 458 Pfam PF03313 Serine dehydratase alpha chain 186 452 4.2E-102 T 22-04-2016 IPR005130 Serine dehydratase-like, alpha subunit PP4_RS12740 f7f7b773927bd0623d11e6e2ed7a26d0 458 Gene3D G3DSA:3.30.1330.90 11 157 2.6E-54 T 22-04-2016 IPR029009 Allosteric substrate binding domain PP4_RS12740 f7f7b773927bd0623d11e6e2ed7a26d0 458 PANTHER PTHR30182:SF1 1 453 8.4E-228 T 22-04-2016 PP4_RS26745 54ba59de1f5bae1d7acfd49f60afacaa 112 Gene3D G3DSA:3.30.70.120 1 112 7.4E-50 T 22-04-2016 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal PP4_RS26745 54ba59de1f5bae1d7acfd49f60afacaa 112 ProSitePatterns PS00496 P-II protein uridylation site. 46 51 - T 22-04-2016 IPR002332 Nitrogen regulatory protein P-II, urydylation site GO:0006808|GO:0030234 PP4_RS26745 54ba59de1f5bae1d7acfd49f60afacaa 112 PRINTS PR00340 P-II protein signature 2 17 2.0E-43 T 22-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 PP4_RS26745 54ba59de1f5bae1d7acfd49f60afacaa 112 PRINTS PR00340 P-II protein signature 52 75 2.0E-43 T 22-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 PP4_RS26745 54ba59de1f5bae1d7acfd49f60afacaa 112 PRINTS PR00340 P-II protein signature 83 103 2.0E-43 T 22-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 PP4_RS26745 54ba59de1f5bae1d7acfd49f60afacaa 112 PRINTS PR00340 P-II protein signature 23 41 2.0E-43 T 22-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 PP4_RS26745 54ba59de1f5bae1d7acfd49f60afacaa 112 Pfam PF00543 Nitrogen regulatory protein P-II 4 105 3.6E-43 T 22-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 PP4_RS26745 54ba59de1f5bae1d7acfd49f60afacaa 112 SUPERFAMILY SSF54913 1 112 4.45E-45 T 22-04-2016 IPR011322 Nitrogen regulatory PII-like, alpha/beta PP4_RS26745 54ba59de1f5bae1d7acfd49f60afacaa 112 PANTHER PTHR30115 1 112 4.2E-78 T 22-04-2016 PP4_RS26745 54ba59de1f5bae1d7acfd49f60afacaa 112 PIRSF PIRSF039144 1 112 1.3E-54 T 22-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 PP4_RS26745 54ba59de1f5bae1d7acfd49f60afacaa 112 PANTHER PTHR30115:SF12 1 112 4.2E-78 T 22-04-2016 PP4_RS26745 54ba59de1f5bae1d7acfd49f60afacaa 112 ProSitePatterns PS00638 P-II protein C-terminal region signature. 83 96 - T 22-04-2016 IPR017918 Nitrogen regulatory protein PII, conserved site GO:0006808|GO:0030234 PP4_RS26745 54ba59de1f5bae1d7acfd49f60afacaa 112 SMART SM00938 4 105 4.1E-65 T 22-04-2016 IPR002187 Nitrogen regulatory protein PII GO:0006808|GO:0030234 PP4_RS24540 4095280be028e7e9219520762e4e2bed 215 Gene3D G3DSA:3.90.1550.10 6 202 9.2E-68 T 22-04-2016 PP4_RS24540 4095280be028e7e9219520762e4e2bed 215 PIRSF PIRSF016262 1 213 1.0E-57 T 22-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 PP4_RS24540 4095280be028e7e9219520762e4e2bed 215 SUPERFAMILY SSF55681 7 204 1.16E-67 T 22-04-2016 PP4_RS24540 4095280be028e7e9219520762e4e2bed 215 PANTHER PTHR10993 7 205 1.1E-75 T 22-04-2016 PP4_RS24540 4095280be028e7e9219520762e4e2bed 215 TIGRFAM TIGR00214 lipB: lipoyl(octanoyl) transferase 26 195 8.2E-63 T 22-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 PP4_RS24540 4095280be028e7e9219520762e4e2bed 215 ProSitePatterns PS01313 Lipoate-protein ligase B signature. 70 85 - T 22-04-2016 IPR020605 Octanoyltransferase, conserved site GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 PP4_RS24540 4095280be028e7e9219520762e4e2bed 215 Hamap MF_00013 Octanoyltransferase [lipB]. 4 205 37.918 T 22-04-2016 IPR000544 Octanoyltransferase GO:0005737|GO:0009107|GO:0016415 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 PP4_RS24540 4095280be028e7e9219520762e4e2bed 215 Pfam PF03099 Biotin/lipoate A/B protein ligase family 61 158 4.8E-7 T 22-04-2016 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 PP4_RS24540 4095280be028e7e9219520762e4e2bed 215 ProDom PD006086 LIGASE LIPOATE-PROTEIN B TRANSFERASE ACYLTRANSFERASE LIPOYLTRANSFERASE LIPOYL-ACYL-CARRIER 2.3.1.- PROTEIN-PROTEIN- N-LIPOYLTRANSFERASE 74 127 1.0E-20 T 22-04-2016 PP4_RS26810 f155e823784316088c004a2c6ae2619e 428 Gene3D G3DSA:3.50.50.60 345 397 2.3E-50 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS26810 f155e823784316088c004a2c6ae2619e 428 Gene3D G3DSA:3.50.50.60 172 252 2.3E-50 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS26810 f155e823784316088c004a2c6ae2619e 428 Gene3D G3DSA:3.50.50.60 20 119 2.3E-50 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS26810 f155e823784316088c004a2c6ae2619e 428 SUPERFAMILY SSF51905 29 253 9.71E-46 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS26810 f155e823784316088c004a2c6ae2619e 428 SUPERFAMILY SSF51905 345 396 9.71E-46 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS26810 f155e823784316088c004a2c6ae2619e 428 PANTHER PTHR13847 8 396 9.7E-163 T 22-04-2016 PP4_RS26810 f155e823784316088c004a2c6ae2619e 428 PANTHER PTHR13847:SF190 8 396 9.7E-163 T 22-04-2016 PP4_RS26810 f155e823784316088c004a2c6ae2619e 428 Pfam PF01266 FAD dependent oxidoreductase 30 381 5.6E-54 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PP4_RS25125 c2e7394f7474bf4f3363679b62cd0818 150 PANTHER PTHR38774 2 150 1.3E-47 T 22-04-2016 PP4_RS25125 c2e7394f7474bf4f3363679b62cd0818 150 PANTHER PTHR38774:SF1 2 150 1.3E-47 T 22-04-2016 PP4_RS25125 c2e7394f7474bf4f3363679b62cd0818 150 Pfam PF06853 Protein of unknown function (DUF1249) 27 145 3.8E-41 T 22-04-2016 IPR009659 Protein of unknown function DUF1249 PP4_RS21375 80e58f7fcf13ae15828a990c6a86da0c 601 SUPERFAMILY SSF51735 403 500 9.4E-7 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS21375 80e58f7fcf13ae15828a990c6a86da0c 601 PANTHER PTHR32507 1 594 5.3E-199 T 22-04-2016 PP4_RS21375 80e58f7fcf13ae15828a990c6a86da0c 601 Gene3D G3DSA:3.40.50.720 403 499 2.5E-6 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS21375 80e58f7fcf13ae15828a990c6a86da0c 601 Pfam PF00999 Sodium/hydrogen exchanger family 14 390 8.2E-38 T 22-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 PP4_RS21375 80e58f7fcf13ae15828a990c6a86da0c 601 PANTHER PTHR32507:SF0 1 594 5.3E-199 T 22-04-2016 PP4_RS25850 f0083c03ef3b5fe8402e211c6331d985 580 Gene3D G3DSA:3.30.70.1450 414 482 3.8E-8 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PP4_RS25850 f0083c03ef3b5fe8402e211c6331d985 580 SUPERFAMILY SSF116726 409 482 8.37E-12 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PP4_RS25850 f0083c03ef3b5fe8402e211c6331d985 580 Pfam PF00999 Sodium/hydrogen exchanger family 15 387 3.0E-53 T 22-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 PP4_RS25850 f0083c03ef3b5fe8402e211c6331d985 580 PANTHER PTHR32507:SF7 1 570 3.8E-277 T 22-04-2016 IPR030151 K(+)/H(+) antiporter NhaP GO:0005451|GO:0006813|GO:0016021 PP4_RS25850 f0083c03ef3b5fe8402e211c6331d985 580 Hamap MF_01075 K(+)/H(+) antiporter NhaP2 [nhaP2]. 1 573 51.083 T 22-04-2016 IPR023729 K(+)/H(+) antiporter NhaP2 GO:0005451|GO:0006812|GO:0006813|GO:0006884|GO:0016021 PP4_RS25850 f0083c03ef3b5fe8402e211c6331d985 580 Gene3D G3DSA:3.30.465.10 496 567 6.5E-9 T 22-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 PP4_RS25850 f0083c03ef3b5fe8402e211c6331d985 580 SUPERFAMILY SSF56176 496 568 1.47E-8 T 22-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 PP4_RS25850 f0083c03ef3b5fe8402e211c6331d985 580 Pfam PF03471 Transporter associated domain 495 568 9.0E-11 T 22-04-2016 IPR005170 Transporter-associated domain PP4_RS25850 f0083c03ef3b5fe8402e211c6331d985 580 Pfam PF02080 TrkA-C domain 416 482 6.3E-13 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PP4_RS25850 f0083c03ef3b5fe8402e211c6331d985 580 PANTHER PTHR32507 1 570 3.8E-277 T 22-04-2016 PP4_RS25850 f0083c03ef3b5fe8402e211c6331d985 580 SMART SM01091 491 570 6.6E-13 T 22-04-2016 IPR005170 Transporter-associated domain PP4_RS05700 c54c02eff170a102b6df92f304805b91 416 PIRSF PIRSF000355 65 416 3.4E-142 T 22-04-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 PP4_RS05700 c54c02eff170a102b6df92f304805b91 416 Gene3D G3DSA:1.10.620.20 79 387 7.5E-109 T 22-04-2016 IPR012348 Ribonucleotide reductase-related GO:0016491|GO:0055114 Reactome: REACT_1698 PP4_RS05700 c54c02eff170a102b6df92f304805b91 416 Pfam PF00268 Ribonucleotide reductase, small chain 96 383 5.9E-83 T 22-04-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 PP4_RS05700 c54c02eff170a102b6df92f304805b91 416 PANTHER PTHR23409:SF18 20 411 1.2E-187 T 22-04-2016 PP4_RS05700 c54c02eff170a102b6df92f304805b91 416 SUPERFAMILY SSF47240 64 389 1.19E-97 T 22-04-2016 IPR009078 Ferritin-like superfamily PP4_RS05700 c54c02eff170a102b6df92f304805b91 416 PANTHER PTHR23409 20 411 1.2E-187 T 22-04-2016 IPR000358 Ribonucleotide reductase small subunit GO:0009186|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: REACT_1698|UniPathway: UPA00326 PP4_RS10415 ec5846ea6f474543ebbcdb8f8c3d2b74 352 SUPERFAMILY SSF52317 24 213 2.6E-40 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS10415 ec5846ea6f474543ebbcdb8f8c3d2b74 352 PANTHER PTHR11019:SF68 82 338 5.7E-41 T 22-04-2016 PP4_RS10415 ec5846ea6f474543ebbcdb8f8c3d2b74 352 Pfam PF01965 DJ-1/PfpI family 60 195 1.9E-17 T 22-04-2016 IPR002818 DJ-1/PfpI PP4_RS10415 ec5846ea6f474543ebbcdb8f8c3d2b74 352 Pfam PF12833 Helix-turn-helix domain 253 332 1.5E-25 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS10415 ec5846ea6f474543ebbcdb8f8c3d2b74 352 SUPERFAMILY SSF46689 283 334 8.06E-15 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS10415 ec5846ea6f474543ebbcdb8f8c3d2b74 352 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 314 330 9.3E-6 T 22-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PP4_RS10415 ec5846ea6f474543ebbcdb8f8c3d2b74 352 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 299 314 9.3E-6 T 22-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PP4_RS10415 ec5846ea6f474543ebbcdb8f8c3d2b74 352 Gene3D G3DSA:3.40.50.880 24 237 3.8E-36 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS10415 ec5846ea6f474543ebbcdb8f8c3d2b74 352 Gene3D G3DSA:1.10.10.60 286 334 2.1E-18 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS10415 ec5846ea6f474543ebbcdb8f8c3d2b74 352 PANTHER PTHR11019 82 338 5.7E-41 T 22-04-2016 PP4_RS10415 ec5846ea6f474543ebbcdb8f8c3d2b74 352 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 284 326 - T 22-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PP4_RS10415 ec5846ea6f474543ebbcdb8f8c3d2b74 352 Gene3D G3DSA:1.10.10.60 238 285 1.0E-12 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS10415 ec5846ea6f474543ebbcdb8f8c3d2b74 352 SUPERFAMILY SSF46689 230 281 9.86E-8 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS10415 ec5846ea6f474543ebbcdb8f8c3d2b74 352 SMART SM00342 247 330 1.8E-27 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS05440 ab027921a814503ad32b81e9551681a0 215 PANTHER PTHR10851:SF0 1 215 2.7E-110 T 22-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 PP4_RS05440 ab027921a814503ad32b81e9551681a0 215 ProSitePatterns PS01064 Pyridoxamine 5'-phosphate oxidase signature. 185 198 - T 22-04-2016 IPR019740 Pyridoxamine 5'-phosphate oxidase, conserved site GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 PP4_RS05440 ab027921a814503ad32b81e9551681a0 215 Gene3D G3DSA:2.30.110.10 17 215 1.9E-84 T 22-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 PP4_RS05440 ab027921a814503ad32b81e9551681a0 215 PIRSF PIRSF000190 1 215 2.8E-81 T 22-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 PP4_RS05440 ab027921a814503ad32b81e9551681a0 215 PANTHER PTHR10851 1 215 2.7E-110 T 22-04-2016 PP4_RS05440 ab027921a814503ad32b81e9551681a0 215 Pfam PF01243 Pyridoxamine 5'-phosphate oxidase 43 122 7.7E-28 T 22-04-2016 IPR011576 Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain GO:0004733|GO:0010181|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 PP4_RS05440 ab027921a814503ad32b81e9551681a0 215 Hamap MF_01629 Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 11 215 38.194 T 22-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 PP4_RS05440 ab027921a814503ad32b81e9551681a0 215 TIGRFAM TIGR00558 pdxH: pyridoxamine 5'-phosphate oxidase 3 215 2.4E-87 T 22-04-2016 IPR000659 Pyridoxamine 5'-phosphate oxidase GO:0004733|GO:0008615|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 PP4_RS05440 ab027921a814503ad32b81e9551681a0 215 SUPERFAMILY SSF50475 8 215 1.67E-65 T 22-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 PP4_RS05440 ab027921a814503ad32b81e9551681a0 215 Pfam PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 175 215 6.2E-18 T 22-04-2016 IPR019576 Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal GO:0016638|GO:0055114 KEGG: 00750+1.4.3.5|MetaCyc: PWY-7204|MetaCyc: PWY-7282|UniPathway: UPA00647 PP4_RS03230 80a191eb7db17691d1701ff91aa97e8a 153 SUPERFAMILY SSF51230 78 151 4.71E-24 T 22-04-2016 IPR011053 Single hybrid motif PP4_RS03230 80a191eb7db17691d1701ff91aa97e8a 153 Pfam PF00364 Biotin-requiring enzyme 79 151 8.0E-24 T 22-04-2016 IPR000089 Biotin/lipoyl attachment PP4_RS03230 80a191eb7db17691d1701ff91aa97e8a 153 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 82 95 1.4E-17 T 22-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 PP4_RS03230 80a191eb7db17691d1701ff91aa97e8a 153 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 114 127 1.4E-17 T 22-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 PP4_RS03230 80a191eb7db17691d1701ff91aa97e8a 153 PRINTS PR01071 Acetyl-CoA biotin carboxyl carrier protein signature 99 113 1.4E-17 T 22-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 PP4_RS03230 80a191eb7db17691d1701ff91aa97e8a 153 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 109 126 - T 22-04-2016 IPR001882 Biotin-binding site PP4_RS03230 80a191eb7db17691d1701ff91aa97e8a 153 PANTHER PTHR23151 1 153 2.7E-49 T 22-04-2016 PP4_RS03230 80a191eb7db17691d1701ff91aa97e8a 153 Gene3D G3DSA:2.40.50.100 77 152 4.7E-30 T 22-04-2016 PP4_RS03230 80a191eb7db17691d1701ff91aa97e8a 153 TIGRFAM TIGR00531 BCCP: acetyl-CoA carboxylase, biotin carboxyl carrier protein 1 152 9.1E-58 T 22-04-2016 IPR001249 Acetyl-CoA biotin carboxyl carrier GO:0003989|GO:0006633|GO:0009317 UniPathway: UPA00094 PP4_RS18950 3d7412fddf039e40fa08fdd7afc44ecf 272 Pfam PF03618 Kinase/pyrophosphorylase 6 262 1.0E-76 T 22-04-2016 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 PP4_RS18950 3d7412fddf039e40fa08fdd7afc44ecf 272 PANTHER PTHR31756 1 272 3.8E-110 T 22-04-2016 PP4_RS18950 3d7412fddf039e40fa08fdd7afc44ecf 272 PANTHER PTHR31756:SF3 1 272 3.8E-110 T 22-04-2016 PP4_RS18950 3d7412fddf039e40fa08fdd7afc44ecf 272 Hamap MF_01062 Phosphoenolpyruvate synthase regulatory protein [ppsR]. 2 271 76.701 T 22-04-2016 IPR026530 Phosphoenolpyruvate synthase regulatory protein PP4_RS16260 003c8bfde476e0579721a9c8c6a9ce07 264 PANTHER PTHR30193:SF30 3 264 1.8E-95 T 22-04-2016 PP4_RS16260 003c8bfde476e0579721a9c8c6a9ce07 264 Gene3D G3DSA:1.10.3720.10 9 253 1.7E-54 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS16260 003c8bfde476e0579721a9c8c6a9ce07 264 SUPERFAMILY SSF161098 8 253 9.16E-56 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS16260 003c8bfde476e0579721a9c8c6a9ce07 264 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 249 2.9E-14 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS16260 003c8bfde476e0579721a9c8c6a9ce07 264 PANTHER PTHR30193 3 264 1.8E-95 T 22-04-2016 PP4_RS02040 f7210150934352891658897c37f61460 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.8E-9 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS02040 f7210150934352891658897c37f61460 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.8E-9 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS02040 f7210150934352891658897c37f61460 307 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.8E-9 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS02040 f7210150934352891658897c37f61460 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 4.4E-21 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS02040 f7210150934352891658897c37f61460 307 PANTHER PTHR30346:SF3 1 292 7.5E-99 T 22-04-2016 PP4_RS02040 f7210150934352891658897c37f61460 307 PANTHER PTHR30346 1 292 7.5E-99 T 22-04-2016 PP4_RS02040 f7210150934352891658897c37f61460 307 Pfam PF03466 LysR substrate binding domain 91 292 2.1E-39 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS02040 f7210150934352891658897c37f61460 307 Gene3D G3DSA:3.40.190.10 173 262 1.4E-14 T 22-04-2016 PP4_RS02040 f7210150934352891658897c37f61460 307 SUPERFAMILY SSF53850 91 294 4.5E-35 T 22-04-2016 PP4_RS02040 f7210150934352891658897c37f61460 307 Gene3D G3DSA:3.40.190.10 89 172 1.0E-18 T 22-04-2016 PP4_RS02040 f7210150934352891658897c37f61460 307 SUPERFAMILY SSF46785 1 87 6.64E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS02040 f7210150934352891658897c37f61460 307 Gene3D G3DSA:1.10.10.10 1 87 1.4E-28 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS23720 43d44562f98d48b4ef300752f61eb3f3 102 SMART SM01103 3 86 2.5E-36 T 22-04-2016 IPR001890 RNA-binding, CRM domain GO:0003723 PP4_RS23720 43d44562f98d48b4ef300752f61eb3f3 102 SUPERFAMILY SSF75471 1 96 1.44E-26 T 22-04-2016 IPR001890 RNA-binding, CRM domain GO:0003723 PP4_RS23720 43d44562f98d48b4ef300752f61eb3f3 102 ProDom PD010559 RNA-BINDING YHBY UPF0044 PREDICTED RNA RIBOSOMAL CONTAINING KH BINDING DOMAIN 10 86 1.0E-36 T 22-04-2016 IPR001890 RNA-binding, CRM domain GO:0003723 PP4_RS23720 43d44562f98d48b4ef300752f61eb3f3 102 Gene3D G3DSA:3.30.110.60 1 96 2.1E-26 T 22-04-2016 IPR001890 RNA-binding, CRM domain GO:0003723 PP4_RS23720 43d44562f98d48b4ef300752f61eb3f3 102 Pfam PF01985 CRS1 / YhbY (CRM) domain 3 86 9.8E-17 T 22-04-2016 IPR001890 RNA-binding, CRM domain GO:0003723 PP4_RS23720 43d44562f98d48b4ef300752f61eb3f3 102 PANTHER PTHR40065 1 102 5.8E-21 T 22-04-2016 PP4_RS07885 510765a5afbf1773bd88b816aef05bbc 448 Pfam PF01244 Membrane dipeptidase (Peptidase family M19) 47 435 4.0E-106 T 22-04-2016 IPR008257 Renal dipeptidase family GO:0006508|GO:0016805 MetaCyc: PWY-7533 PP4_RS07885 510765a5afbf1773bd88b816aef05bbc 448 PANTHER PTHR10443:SF22 357 440 8.1E-113 T 22-04-2016 PP4_RS07885 510765a5afbf1773bd88b816aef05bbc 448 PANTHER PTHR10443:SF22 126 301 8.1E-113 T 22-04-2016 PP4_RS07885 510765a5afbf1773bd88b816aef05bbc 448 PANTHER PTHR10443:SF22 43 102 8.1E-113 T 22-04-2016 PP4_RS07885 510765a5afbf1773bd88b816aef05bbc 448 Gene3D G3DSA:3.20.20.140 360 440 6.5E-96 T 22-04-2016 PP4_RS07885 510765a5afbf1773bd88b816aef05bbc 448 Gene3D G3DSA:3.20.20.140 37 301 6.5E-96 T 22-04-2016 PP4_RS07885 510765a5afbf1773bd88b816aef05bbc 448 Gene3D G3DSA:1.10.287.650 303 359 1.4E-30 T 22-04-2016 PP4_RS07885 510765a5afbf1773bd88b816aef05bbc 448 PANTHER PTHR10443 357 440 8.1E-113 T 22-04-2016 IPR008257 Renal dipeptidase family GO:0006508|GO:0016805 MetaCyc: PWY-7533 PP4_RS07885 510765a5afbf1773bd88b816aef05bbc 448 PANTHER PTHR10443 126 301 8.1E-113 T 22-04-2016 IPR008257 Renal dipeptidase family GO:0006508|GO:0016805 MetaCyc: PWY-7533 PP4_RS07885 510765a5afbf1773bd88b816aef05bbc 448 PANTHER PTHR10443 43 102 8.1E-113 T 22-04-2016 IPR008257 Renal dipeptidase family GO:0006508|GO:0016805 MetaCyc: PWY-7533 PP4_RS07885 510765a5afbf1773bd88b816aef05bbc 448 SUPERFAMILY SSF51556 41 301 6.8E-78 T 22-04-2016 IPR032466 Metal-dependent hydrolase PP4_RS07885 510765a5afbf1773bd88b816aef05bbc 448 SUPERFAMILY SSF51556 358 440 6.8E-78 T 22-04-2016 IPR032466 Metal-dependent hydrolase PP4_RS26385 bdb736ec7ba628d917524ca8584b8f30 133 PANTHER PTHR30558 9 131 1.3E-33 T 22-04-2016 PP4_RS26385 bdb736ec7ba628d917524ca8584b8f30 133 PANTHER PTHR30558:SF3 9 131 1.3E-33 T 22-04-2016 PP4_RS26385 bdb736ec7ba628d917524ca8584b8f30 133 Pfam PF02472 Biopolymer transport protein ExbD/TolR 12 132 1.6E-28 T 22-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 PP4_RS15755 224011b7bef8a5f651ce9d8b06ac0b6c 510 Pfam PF00158 Sigma-54 interaction domain 198 365 2.6E-65 T 22-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 PP4_RS15755 224011b7bef8a5f651ce9d8b06ac0b6c 510 SUPERFAMILY SSF52540 199 441 1.7E-65 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS15755 224011b7bef8a5f651ce9d8b06ac0b6c 510 TIGRFAM TIGR04381 HTH_TypR: TyrR family helix-turn-helix domain 459 506 6.6E-23 T 22-04-2016 IPR030828 TyrR family, helix-turn-helix domain GO:0003677 PP4_RS15755 224011b7bef8a5f651ce9d8b06ac0b6c 510 PANTHER PTHR32071 1 508 3.0E-168 T 22-04-2016 PP4_RS15755 224011b7bef8a5f651ce9d8b06ac0b6c 510 Gene3D G3DSA:3.30.450.20 78 134 5.2E-6 T 22-04-2016 PP4_RS15755 224011b7bef8a5f651ce9d8b06ac0b6c 510 SUPERFAMILY SSF46689 455 505 5.82E-6 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS15755 224011b7bef8a5f651ce9d8b06ac0b6c 510 Gene3D G3DSA:1.10.10.60 454 505 2.5E-18 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS15755 224011b7bef8a5f651ce9d8b06ac0b6c 510 PANTHER PTHR32071:SF3 1 508 3.0E-168 T 22-04-2016 PP4_RS15755 224011b7bef8a5f651ce9d8b06ac0b6c 510 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 222 235 - T 22-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 PP4_RS15755 224011b7bef8a5f651ce9d8b06ac0b6c 510 Gene3D G3DSA:3.40.50.300 197 371 2.2E-56 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS15755 224011b7bef8a5f651ce9d8b06ac0b6c 510 Gene3D G3DSA:1.10.8.60 372 441 3.4E-21 T 22-04-2016 PP4_RS15755 224011b7bef8a5f651ce9d8b06ac0b6c 510 SMART SM00382 218 363 2.2E-8 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS15755 224011b7bef8a5f651ce9d8b06ac0b6c 510 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 285 300 - T 22-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PP4_RS25430 571288a8e4f56b3a7912359ef110ce35 262 PANTHER PTHR35936:SF3 1 253 3.2E-40 T 22-04-2016 PP4_RS25430 571288a8e4f56b3a7912359ef110ce35 262 Gene3D G3DSA:3.40.190.10 132 188 4.8E-7 T 22-04-2016 PP4_RS25430 571288a8e4f56b3a7912359ef110ce35 262 SMART SM00062 24 246 4.4E-4 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS25430 571288a8e4f56b3a7912359ef110ce35 262 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 28 244 4.2E-26 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS25430 571288a8e4f56b3a7912359ef110ce35 262 PANTHER PTHR35936 1 253 3.2E-40 T 22-04-2016 PP4_RS25430 571288a8e4f56b3a7912359ef110ce35 262 Gene3D G3DSA:3.40.190.10 28 131 1.3E-15 T 22-04-2016 PP4_RS25430 571288a8e4f56b3a7912359ef110ce35 262 SUPERFAMILY SSF53850 25 244 7.97E-39 T 22-04-2016 PP4_RS17760 2c6b933b258e2710563eb17f87f875d1 437 Pfam PF00375 Sodium:dicarboxylate symporter family 10 402 3.8E-98 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS17760 2c6b933b258e2710563eb17f87f875d1 437 PRINTS PR00173 Glutamate-aspartate symporter signature 3 23 1.5E-28 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS17760 2c6b933b258e2710563eb17f87f875d1 437 PRINTS PR00173 Glutamate-aspartate symporter signature 146 168 1.5E-28 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS17760 2c6b933b258e2710563eb17f87f875d1 437 PRINTS PR00173 Glutamate-aspartate symporter signature 293 319 1.5E-28 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS17760 2c6b933b258e2710563eb17f87f875d1 437 PRINTS PR00173 Glutamate-aspartate symporter signature 74 99 1.5E-28 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS17760 2c6b933b258e2710563eb17f87f875d1 437 PRINTS PR00173 Glutamate-aspartate symporter signature 193 212 1.5E-28 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS17760 2c6b933b258e2710563eb17f87f875d1 437 PRINTS PR00173 Glutamate-aspartate symporter signature 44 64 1.5E-28 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS17760 2c6b933b258e2710563eb17f87f875d1 437 PRINTS PR00173 Glutamate-aspartate symporter signature 328 347 1.5E-28 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS17760 2c6b933b258e2710563eb17f87f875d1 437 Gene3D G3DSA:1.10.3860.10 5 406 1.6E-103 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS17760 2c6b933b258e2710563eb17f87f875d1 437 SUPERFAMILY SSF118215 10 403 1.07E-105 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS17760 2c6b933b258e2710563eb17f87f875d1 437 PANTHER PTHR11958:SF47 1 419 9.7E-253 T 22-04-2016 PP4_RS17760 2c6b933b258e2710563eb17f87f875d1 437 PANTHER PTHR11958 1 419 9.7E-253 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS04645 1bb7e814514fb08d85531d2885007608 477 PANTHER PTHR11046:SF2 3 467 9.8E-233 T 22-04-2016 IPR023607 Exodeoxyribonuclease I GO:0004529 PP4_RS04645 1bb7e814514fb08d85531d2885007608 477 PANTHER PTHR11046 3 467 9.8E-233 T 22-04-2016 PP4_RS04645 1bb7e814514fb08d85531d2885007608 477 Gene3D G3DSA:3.30.420.10 3 194 2.5E-77 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PP4_RS04645 1bb7e814514fb08d85531d2885007608 477 Pfam PF00929 Exonuclease 7 186 1.2E-21 T 22-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III PP4_RS04645 1bb7e814514fb08d85531d2885007608 477 SUPERFAMILY SSF53098 5 470 3.27E-119 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PP4_RS04645 1bb7e814514fb08d85531d2885007608 477 PIRSF PIRSF000977 1 475 2.3E-199 T 22-04-2016 IPR023607 Exodeoxyribonuclease I GO:0004529 PP4_RS04645 1bb7e814514fb08d85531d2885007608 477 Pfam PF08411 Exonuclease C-terminal 205 468 6.8E-93 T 22-04-2016 IPR013620 Exonuclease C-terminal GO:0006281|GO:0008852 PP4_RS21565 7d446239a4c77b6113f75b40fb6e7c24 460 PANTHER PTHR11709:SF33 56 459 1.9E-86 T 22-04-2016 PP4_RS21565 7d446239a4c77b6113f75b40fb6e7c24 460 SUPERFAMILY SSF49503 328 459 1.64E-34 T 22-04-2016 IPR008972 Cupredoxin PP4_RS21565 7d446239a4c77b6113f75b40fb6e7c24 460 ProSitePatterns PS00080 Multicopper oxidases signature 2. 442 453 - T 22-04-2016 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 PP4_RS21565 7d446239a4c77b6113f75b40fb6e7c24 460 Gene3D G3DSA:2.60.40.420 35 157 8.3E-33 T 22-04-2016 IPR008972 Cupredoxin PP4_RS21565 7d446239a4c77b6113f75b40fb6e7c24 460 ProSitePatterns PS00079 Multicopper oxidases signature 1. 437 457 - T 22-04-2016 IPR033138 Multicopper oxidases, conserved site PP4_RS21565 7d446239a4c77b6113f75b40fb6e7c24 460 Pfam PF07731 Multicopper oxidase 348 459 4.9E-27 T 22-04-2016 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 PP4_RS21565 7d446239a4c77b6113f75b40fb6e7c24 460 Pfam PF07732 Multicopper oxidase 56 161 3.0E-32 T 22-04-2016 IPR011707 Multicopper oxidase, type 3 GO:0005507 PP4_RS21565 7d446239a4c77b6113f75b40fb6e7c24 460 SUPERFAMILY SSF49503 162 281 5.86E-18 T 22-04-2016 IPR008972 Cupredoxin PP4_RS21565 7d446239a4c77b6113f75b40fb6e7c24 460 SUPERFAMILY SSF49503 28 161 1.43E-33 T 22-04-2016 IPR008972 Cupredoxin PP4_RS21565 7d446239a4c77b6113f75b40fb6e7c24 460 Gene3D G3DSA:2.60.40.420 158 281 7.5E-16 T 22-04-2016 IPR008972 Cupredoxin PP4_RS21565 7d446239a4c77b6113f75b40fb6e7c24 460 PANTHER PTHR11709 56 459 1.9E-86 T 22-04-2016 PP4_RS21565 7d446239a4c77b6113f75b40fb6e7c24 460 Gene3D G3DSA:2.60.40.420 300 458 3.8E-34 T 22-04-2016 IPR008972 Cupredoxin PP4_RS21625 ed491f29e4a93f0c7e6ad949c1d82d2c 237 Pfam PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase 19 235 3.1E-53 T 22-04-2016 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase GO:0005975 KEGG: 00520+3.5.99.6|MetaCyc: PWY-5514|MetaCyc: PWY-6855|MetaCyc: PWY-6906 PP4_RS21625 ed491f29e4a93f0c7e6ad949c1d82d2c 237 TIGRFAM TIGR01198 pgl: 6-phosphogluconolactonase 18 229 5.3E-61 T 22-04-2016 IPR005900 6-phosphogluconolactonase, DevB-type GO:0005975|GO:0006098|GO:0017057 KEGG: 00030+3.1.1.31|UniPathway: UPA00115 PP4_RS21625 ed491f29e4a93f0c7e6ad949c1d82d2c 237 SUPERFAMILY SSF100950 12 234 2.79E-55 T 22-04-2016 PP4_RS21625 ed491f29e4a93f0c7e6ad949c1d82d2c 237 Gene3D G3DSA:3.40.50.1360 10 228 4.5E-54 T 22-04-2016 PP4_RS21625 ed491f29e4a93f0c7e6ad949c1d82d2c 237 PANTHER PTHR11054 19 235 3.8E-44 T 22-04-2016 PP4_RS12800 2f40184f9cb1decaea1f0ea48132290b 263 PANTHER PTHR20854 2 263 5.5E-94 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 PP4_RS12800 2f40184f9cb1decaea1f0ea48132290b 263 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 87 100 - T 22-04-2016 IPR020583 Inositol monophosphatase, metal-binding site PP4_RS12800 2f40184f9cb1decaea1f0ea48132290b 263 SUPERFAMILY SSF56655 10 260 4.19E-71 T 22-04-2016 PP4_RS12800 2f40184f9cb1decaea1f0ea48132290b 263 PRINTS PR00377 Inositol monophosphatase superfamily signature 87 103 7.9E-23 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 PP4_RS12800 2f40184f9cb1decaea1f0ea48132290b 263 PRINTS PR00377 Inositol monophosphatase superfamily signature 45 65 7.9E-23 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 PP4_RS12800 2f40184f9cb1decaea1f0ea48132290b 263 PRINTS PR00377 Inositol monophosphatase superfamily signature 67 83 7.9E-23 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 PP4_RS12800 2f40184f9cb1decaea1f0ea48132290b 263 PRINTS PR00377 Inositol monophosphatase superfamily signature 135 158 7.9E-23 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 PP4_RS12800 2f40184f9cb1decaea1f0ea48132290b 263 PRINTS PR00377 Inositol monophosphatase superfamily signature 210 234 7.9E-23 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 PP4_RS12800 2f40184f9cb1decaea1f0ea48132290b 263 TIGRFAM TIGR02067 his_9_HisN: histidinol-phosphatase 13 259 9.6E-100 T 22-04-2016 IPR011809 Histidinol-phosphate phosphatase, putative, inositol monophosphatase GO:0004401 KEGG: 00340+3.1.3.15|UniPathway: UPA00031 PP4_RS12800 2f40184f9cb1decaea1f0ea48132290b 263 Gene3D G3DSA:3.30.540.10 10 155 2.2E-42 T 22-04-2016 PP4_RS12800 2f40184f9cb1decaea1f0ea48132290b 263 PANTHER PTHR20854:SF38 2 263 5.5E-94 T 22-04-2016 PP4_RS12800 2f40184f9cb1decaea1f0ea48132290b 263 Pfam PF00459 Inositol monophosphatase family 11 257 3.7E-48 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 PP4_RS12800 2f40184f9cb1decaea1f0ea48132290b 263 Gene3D G3DSA:3.40.190.80 156 261 4.2E-21 T 22-04-2016 PP4_RS24755 49c60a3aa0c662867cd503b5e89dff4b 421 PANTHER PTHR30483 1 420 3.2E-228 T 22-04-2016 PP4_RS24755 49c60a3aa0c662867cd503b5e89dff4b 421 SUPERFAMILY SSF53822 30 408 3.4E-93 T 22-04-2016 IPR028082 Periplasmic binding protein-like I PP4_RS24755 49c60a3aa0c662867cd503b5e89dff4b 421 Pfam PF13433 Periplasmic binding protein domain 31 407 1.1E-174 T 22-04-2016 PP4_RS24755 49c60a3aa0c662867cd503b5e89dff4b 421 TIGRFAM TIGR03407 urea_ABC_UrtA: urea ABC transporter, urea binding protein 31 404 3.1E-181 T 22-04-2016 IPR017777 ABC transporter, urea, substrate-binding, UrtA PP4_RS24755 49c60a3aa0c662867cd503b5e89dff4b 421 PANTHER PTHR30483:SF8 1 420 3.2E-228 T 22-04-2016 PP4_RS24755 49c60a3aa0c662867cd503b5e89dff4b 421 Gene3D G3DSA:3.40.50.2300 146 345 4.9E-75 T 22-04-2016 PP4_RS24755 49c60a3aa0c662867cd503b5e89dff4b 421 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 31 47 4.2E-5 T 22-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 PP4_RS24755 49c60a3aa0c662867cd503b5e89dff4b 421 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 53 69 4.2E-5 T 22-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 PP4_RS24755 49c60a3aa0c662867cd503b5e89dff4b 421 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 290 303 4.2E-5 T 22-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 PP4_RS08005 285e04e7bffd96d3efba445c5bcbd67f 406 PANTHER PTHR23151:SF47 3 406 1.4E-230 T 22-04-2016 PP4_RS08005 285e04e7bffd96d3efba445c5bcbd67f 406 Gene3D G3DSA:2.40.50.100 1 96 3.6E-26 T 22-04-2016 PP4_RS08005 285e04e7bffd96d3efba445c5bcbd67f 406 Pfam PF00364 Biotin-requiring enzyme 4 76 3.9E-18 T 22-04-2016 IPR000089 Biotin/lipoyl attachment PP4_RS08005 285e04e7bffd96d3efba445c5bcbd67f 406 TIGRFAM TIGR01347 sucB: dihydrolipoyllysine-residue succinyltransferase, E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex 3 405 5.0E-184 T 22-04-2016 IPR006255 Dihydrolipoamide succinyltransferase GO:0004149|GO:0006099|GO:0045252 KEGG: 00020+2.3.1.61|KEGG: 00310+2.3.1.61|MetaCyc: PWY-5084|UniPathway: UPA00868 PP4_RS08005 285e04e7bffd96d3efba445c5bcbd67f 406 Gene3D G3DSA:3.30.559.10 169 404 9.8E-95 T 22-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain PP4_RS08005 285e04e7bffd96d3efba445c5bcbd67f 406 SUPERFAMILY SSF52777 165 404 9.34E-90 T 22-04-2016 PP4_RS08005 285e04e7bffd96d3efba445c5bcbd67f 406 PANTHER PTHR23151 3 406 1.4E-230 T 22-04-2016 PP4_RS08005 285e04e7bffd96d3efba445c5bcbd67f 406 Gene3D G3DSA:4.10.320.10 103 153 4.8E-20 T 22-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 PP4_RS08005 285e04e7bffd96d3efba445c5bcbd67f 406 SUPERFAMILY SSF47005 103 146 8.37E-13 T 22-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 PP4_RS08005 285e04e7bffd96d3efba445c5bcbd67f 406 Pfam PF02817 e3 binding domain 108 141 1.6E-16 T 22-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 PP4_RS08005 285e04e7bffd96d3efba445c5bcbd67f 406 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 27 56 - T 22-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site PP4_RS08005 285e04e7bffd96d3efba445c5bcbd67f 406 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 175 404 3.8E-82 T 22-04-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 PP4_RS08005 285e04e7bffd96d3efba445c5bcbd67f 406 SUPERFAMILY SSF51230 1 96 2.36E-25 T 22-04-2016 IPR011053 Single hybrid motif PP4_RS01800 93d20ba419c1e200b3114daf11b16ca3 285 PANTHER PTHR10520 6 279 4.4E-137 T 22-04-2016 PP4_RS01800 93d20ba419c1e200b3114daf11b16ca3 285 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 42 54 3.7E-46 T 22-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PP4_RS01800 93d20ba419c1e200b3114daf11b16ca3 285 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 237 259 3.7E-46 T 22-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PP4_RS01800 93d20ba419c1e200b3114daf11b16ca3 285 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 10 36 3.7E-46 T 22-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PP4_RS01800 93d20ba419c1e200b3114daf11b16ca3 285 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 113 140 3.7E-46 T 22-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PP4_RS01800 93d20ba419c1e200b3114daf11b16ca3 285 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 259 284 3.7E-46 T 22-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PP4_RS01800 93d20ba419c1e200b3114daf11b16ca3 285 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 91 113 3.7E-46 T 22-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PP4_RS01800 93d20ba419c1e200b3114daf11b16ca3 285 PIRSF PIRSF036480 5 285 5.7E-98 T 22-04-2016 PP4_RS01800 93d20ba419c1e200b3114daf11b16ca3 285 Gene3D G3DSA:3.40.50.170 90 281 5.3E-52 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PP4_RS01800 93d20ba419c1e200b3114daf11b16ca3 285 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 9 285 1.1E-87 T 22-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PP4_RS01800 93d20ba419c1e200b3114daf11b16ca3 285 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 5 285 43.343 T 22-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PP4_RS01800 93d20ba419c1e200b3114daf11b16ca3 285 PANTHER PTHR10520:SF7 6 279 4.4E-137 T 22-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PP4_RS01800 93d20ba419c1e200b3114daf11b16ca3 285 SUPERFAMILY SSF53328 91 284 2.75E-58 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PP4_RS01800 93d20ba419c1e200b3114daf11b16ca3 285 Gene3D G3DSA:3.30.70.260 6 84 2.4E-11 T 22-04-2016 PP4_RS01800 93d20ba419c1e200b3114daf11b16ca3 285 Pfam PF00551 Formyl transferase 91 266 1.0E-36 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PP4_RS01800 93d20ba419c1e200b3114daf11b16ca3 285 SUPERFAMILY SSF55021 7 84 1.49E-6 T 22-04-2016 PP4_RS00525 aef696a778f4aaf36587a17c7e5fbb84 335 PANTHER PTHR24220:SF455 277 313 1.5E-161 T 22-04-2016 IPR026253 Methionine import ATP-binding protein MetN GO:0005524|GO:0015821|GO:0042626 PP4_RS00525 aef696a778f4aaf36587a17c7e5fbb84 335 Gene3D G3DSA:3.30.70.260 238 335 1.2E-24 T 22-04-2016 PP4_RS00525 aef696a778f4aaf36587a17c7e5fbb84 335 PANTHER PTHR24220 277 313 1.5E-161 T 22-04-2016 PP4_RS00525 aef696a778f4aaf36587a17c7e5fbb84 335 PANTHER PTHR24220 3 248 1.5E-161 T 22-04-2016 PP4_RS00525 aef696a778f4aaf36587a17c7e5fbb84 335 SUPERFAMILY SSF52540 1 241 1.82E-82 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS00525 aef696a778f4aaf36587a17c7e5fbb84 335 SUPERFAMILY SSF55021 262 334 7.21E-16 T 22-04-2016 PP4_RS00525 aef696a778f4aaf36587a17c7e5fbb84 335 Pfam PF09383 NIL domain 263 333 1.8E-17 T 22-04-2016 IPR018449 NIL domain PP4_RS00525 aef696a778f4aaf36587a17c7e5fbb84 335 PANTHER PTHR24220:SF455 3 248 1.5E-161 T 22-04-2016 IPR026253 Methionine import ATP-binding protein MetN GO:0005524|GO:0015821|GO:0042626 PP4_RS00525 aef696a778f4aaf36587a17c7e5fbb84 335 ProSitePatterns PS00211 ABC transporters family signature. 142 156 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS00525 aef696a778f4aaf36587a17c7e5fbb84 335 Gene3D G3DSA:3.40.50.300 1 237 1.1E-87 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS00525 aef696a778f4aaf36587a17c7e5fbb84 335 SMART SM00382 30 219 3.8E-16 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS00525 aef696a778f4aaf36587a17c7e5fbb84 335 SMART SM00930 261 334 6.2E-23 T 22-04-2016 IPR018449 NIL domain PP4_RS00525 aef696a778f4aaf36587a17c7e5fbb84 335 Pfam PF00005 ABC transporter 21 170 3.2E-36 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS15985 55956142e09932307fe8f21b00fa566b 199 SUPERFAMILY SSF56784 25 155 2.51E-7 T 22-04-2016 IPR023214 HAD-like domain PP4_RS15985 55956142e09932307fe8f21b00fa566b 199 Gene3D G3DSA:3.40.50.1000 12 99 4.6E-5 T 22-04-2016 IPR023214 HAD-like domain PP4_RS09425 056f58d7a948ccf562d4c54e553b6665 252 PANTHER PTHR30632 1 251 2.2E-46 T 22-04-2016 PP4_RS09425 056f58d7a948ccf562d4c54e553b6665 252 TIGRFAM TIGR01256 modA: molybdate ABC transporter, periplasmic molybdate-binding protein 32 249 3.7E-79 T 22-04-2016 IPR005950 Molybdenum ABC transporter, periplasmic binding protein GO:0015412|GO:0015689|GO:0030288 PP4_RS09425 056f58d7a948ccf562d4c54e553b6665 252 Gene3D G3DSA:3.40.190.10 115 211 7.7E-37 T 22-04-2016 PP4_RS09425 056f58d7a948ccf562d4c54e553b6665 252 Pfam PF13531 Bacterial extracellular solute-binding protein 28 251 7.6E-45 T 22-04-2016 PP4_RS09425 056f58d7a948ccf562d4c54e553b6665 252 SUPERFAMILY SSF53850 26 251 8.36E-63 T 22-04-2016 PP4_RS09425 056f58d7a948ccf562d4c54e553b6665 252 Gene3D G3DSA:3.40.190.10 212 251 1.4E-13 T 22-04-2016 PP4_RS09425 056f58d7a948ccf562d4c54e553b6665 252 Gene3D G3DSA:3.40.190.10 25 114 1.4E-13 T 22-04-2016 PP4_RS09425 056f58d7a948ccf562d4c54e553b6665 252 PIRSF PIRSF004846 1 252 3.4E-56 T 22-04-2016 IPR005950 Molybdenum ABC transporter, periplasmic binding protein GO:0015412|GO:0015689|GO:0030288 PP4_RS02160 9c11b1b7f190a2c6bc2412c9d58363b8 169 SUPERFAMILY SSF55083 5 153 3.66E-37 T 22-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 PP4_RS02160 9c11b1b7f190a2c6bc2412c9d58363b8 169 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 6 130 1.1E-19 T 22-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 PP4_RS02160 9c11b1b7f190a2c6bc2412c9d58363b8 169 Gene3D G3DSA:3.30.70.560 5 152 1.9E-34 T 22-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 PP4_RS02160 9c11b1b7f190a2c6bc2412c9d58363b8 169 PANTHER PTHR20941 5 163 6.1E-69 T 22-04-2016 PP4_RS02160 9c11b1b7f190a2c6bc2412c9d58363b8 169 PANTHER PTHR20941:SF12 5 163 6.1E-69 T 22-04-2016 PP4_RS02160 9c11b1b7f190a2c6bc2412c9d58363b8 169 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 7 130 2.0E-20 T 22-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 PP4_RS17925 7af0a2ca60b70f5598fd3efcba332a3a 252 SUPERFAMILY SSF51735 5 251 5.32E-79 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS17925 7af0a2ca60b70f5598fd3efcba332a3a 252 Gene3D G3DSA:3.40.50.720 4 250 3.5E-84 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS17925 7af0a2ca60b70f5598fd3efcba332a3a 252 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 15 250 6.3E-68 T 22-04-2016 PP4_RS17925 7af0a2ca60b70f5598fd3efcba332a3a 252 PANTHER PTHR24322 13 142 4.9E-57 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS17925 7af0a2ca60b70f5598fd3efcba332a3a 252 PANTHER PTHR24322 158 190 4.9E-57 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS17925 7af0a2ca60b70f5598fd3efcba332a3a 252 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PP4_RS17925 7af0a2ca60b70f5598fd3efcba332a3a 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 7.4E-39 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS17925 7af0a2ca60b70f5598fd3efcba332a3a 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 7.4E-39 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS17925 7af0a2ca60b70f5598fd3efcba332a3a 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 10 27 7.4E-39 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS17925 7af0a2ca60b70f5598fd3efcba332a3a 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 7.4E-39 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS17925 7af0a2ca60b70f5598fd3efcba332a3a 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 213 233 7.4E-39 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS17925 7af0a2ca60b70f5598fd3efcba332a3a 252 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 7.4E-39 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS17925 7af0a2ca60b70f5598fd3efcba332a3a 252 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 9 192 0.0043 T 22-04-2016 PP4_RS17925 7af0a2ca60b70f5598fd3efcba332a3a 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 7.0E-12 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS17925 7af0a2ca60b70f5598fd3efcba332a3a 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 7.0E-12 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS17925 7af0a2ca60b70f5598fd3efcba332a3a 252 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 7.0E-12 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS01300 e101ddc6f80967e3c9738fbe2c7ab948 212 Gene3D G3DSA:3.30.1020.10 158 211 1.1E-28 T 22-04-2016 PP4_RS01300 e101ddc6f80967e3c9738fbe2c7ab948 212 PIRSF PIRSF000239 1 209 2.4E-77 T 22-04-2016 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15 PP4_RS01300 e101ddc6f80967e3c9738fbe2c7ab948 212 PANTHER PTHR10681 3 207 1.2E-90 T 22-04-2016 PP4_RS01300 e101ddc6f80967e3c9738fbe2c7ab948 212 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 156 196 8.1E-10 T 22-04-2016 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 PP4_RS01300 e101ddc6f80967e3c9738fbe2c7ab948 212 SUPERFAMILY SSF52833 3 209 4.48E-68 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS01300 e101ddc6f80967e3c9738fbe2c7ab948 212 PANTHER PTHR10681:SF99 3 207 1.2E-90 T 22-04-2016 PP4_RS01300 e101ddc6f80967e3c9738fbe2c7ab948 212 Pfam PF00578 AhpC/TSA family 6 134 1.1E-30 T 22-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 PP4_RS01300 e101ddc6f80967e3c9738fbe2c7ab948 212 Gene3D G3DSA:3.40.30.10 5 157 2.9E-60 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS25645 d76f48fe85d4a7e9a56548636e4f0d38 647 Gene3D G3DSA:1.10.287.950 399 617 4.9E-61 T 22-04-2016 PP4_RS25645 d76f48fe85d4a7e9a56548636e4f0d38 647 PANTHER PTHR32089 288 647 2.2E-120 T 22-04-2016 PP4_RS25645 d76f48fe85d4a7e9a56548636e4f0d38 647 PANTHER PTHR32089:SF34 288 647 2.2E-120 T 22-04-2016 PP4_RS25645 d76f48fe85d4a7e9a56548636e4f0d38 647 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 441 645 1.6E-53 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS25645 d76f48fe85d4a7e9a56548636e4f0d38 647 SUPERFAMILY SSF58104 338 647 1.57E-78 T 22-04-2016 PP4_RS25645 d76f48fe85d4a7e9a56548636e4f0d38 647 SMART SM00304 318 370 9.4E-9 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS25645 d76f48fe85d4a7e9a56548636e4f0d38 647 SMART SM00304 376 423 8.8 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS25645 d76f48fe85d4a7e9a56548636e4f0d38 647 Pfam PF00672 HAMP domain 300 366 7.5E-13 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS25645 d76f48fe85d4a7e9a56548636e4f0d38 647 SMART SM01358 37 296 4.9E-35 T 22-04-2016 IPR032255 Helical bimodular sensor domain PP4_RS25645 d76f48fe85d4a7e9a56548636e4f0d38 647 Pfam PF16591 Helical bimodular sensor domain 37 294 2.0E-65 T 22-04-2016 IPR032255 Helical bimodular sensor domain PP4_RS25645 d76f48fe85d4a7e9a56548636e4f0d38 647 SMART SM00283 385 646 1.6E-87 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS26740 fa7833cd62841fc11e61801271ea1ba8 443 Pfam PF00909 Ammonium Transporter Family 36 441 4.3E-119 T 22-04-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 PP4_RS26740 fa7833cd62841fc11e61801271ea1ba8 443 TIGRFAM TIGR00836 amt: ammonium transporter 34 441 6.1E-145 T 22-04-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 PP4_RS26740 fa7833cd62841fc11e61801271ea1ba8 443 SUPERFAMILY SSF111352 30 422 3.4E-129 T 22-04-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 PP4_RS26740 fa7833cd62841fc11e61801271ea1ba8 443 PANTHER PTHR11730:SF17 22 443 1.5E-191 T 22-04-2016 PP4_RS26740 fa7833cd62841fc11e61801271ea1ba8 443 ProSitePatterns PS01219 Ammonium transporters signature. 199 224 - T 22-04-2016 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 PP4_RS26740 fa7833cd62841fc11e61801271ea1ba8 443 PANTHER PTHR11730 22 443 1.5E-191 T 22-04-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 PP4_RS26740 fa7833cd62841fc11e61801271ea1ba8 443 Gene3D G3DSA:1.10.3430.10 29 422 8.6E-142 T 22-04-2016 IPR029020 Ammonium/urea transporter PP4_RS08840 3df2704921ca5ffb5ed2b26306538865 208 ProDom PD037115 UPF0274 YCFC HI0638 METABOLISM UNCHARACTERIZED VV1342 PURINE INVOLVED SO2634 HFLD 9 196 2.0E-92 T 22-04-2016 IPR007451 Uncharacterised protein family UPF0274 PP4_RS08840 3df2704921ca5ffb5ed2b26306538865 208 Hamap MF_00695 High frequency lysogenization protein HflD [hflD]. 1 205 33.719 T 22-04-2016 IPR007451 Uncharacterised protein family UPF0274 PP4_RS08840 3df2704921ca5ffb5ed2b26306538865 208 Gene3D G3DSA:1.10.3890.10 1 205 1.4E-78 T 22-04-2016 IPR007451 Uncharacterised protein family UPF0274 PP4_RS08840 3df2704921ca5ffb5ed2b26306538865 208 Pfam PF04356 Protein of unknown function (DUF489) 6 197 4.7E-70 T 22-04-2016 IPR007451 Uncharacterised protein family UPF0274 PP4_RS08840 3df2704921ca5ffb5ed2b26306538865 208 PANTHER PTHR38100:SF1 1 207 1.2E-87 T 22-04-2016 PP4_RS08840 3df2704921ca5ffb5ed2b26306538865 208 PANTHER PTHR38100 1 207 1.2E-87 T 22-04-2016 PP4_RS08840 3df2704921ca5ffb5ed2b26306538865 208 SUPERFAMILY SSF101322 1 206 1.57E-75 T 22-04-2016 IPR007451 Uncharacterised protein family UPF0274 PP4_RS22570 6210a83b0b993d9fc42a7ae62de440a5 462 Gene3D G3DSA:3.30.565.10 294 461 1.0E-33 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS22570 6210a83b0b993d9fc42a7ae62de440a5 462 PANTHER PTHR24423 181 459 9.5E-76 T 22-04-2016 PP4_RS22570 6210a83b0b993d9fc42a7ae62de440a5 462 SUPERFAMILY SSF55874 296 460 1.15E-30 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS22570 6210a83b0b993d9fc42a7ae62de440a5 462 SUPERFAMILY SSF47384 225 307 9.42E-16 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS22570 6210a83b0b993d9fc42a7ae62de440a5 462 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 353 449 5.4E-17 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS22570 6210a83b0b993d9fc42a7ae62de440a5 462 SMART SM00388 241 307 1.3E-15 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS22570 6210a83b0b993d9fc42a7ae62de440a5 462 Gene3D G3DSA:1.10.287.130 233 293 2.7E-10 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS22570 6210a83b0b993d9fc42a7ae62de440a5 462 PANTHER PTHR24423:SF354 181 459 9.5E-76 T 22-04-2016 PP4_RS22570 6210a83b0b993d9fc42a7ae62de440a5 462 Pfam PF00672 HAMP domain 169 236 3.6E-8 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS22570 6210a83b0b993d9fc42a7ae62de440a5 462 Pfam PF00512 His Kinase A (phospho-acceptor) domain 242 307 2.5E-13 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS22570 6210a83b0b993d9fc42a7ae62de440a5 462 PRINTS PR00344 Bacterial sensor protein C-terminal signature 387 401 1.0E-7 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS22570 6210a83b0b993d9fc42a7ae62de440a5 462 PRINTS PR00344 Bacterial sensor protein C-terminal signature 405 415 1.0E-7 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS22570 6210a83b0b993d9fc42a7ae62de440a5 462 PRINTS PR00344 Bacterial sensor protein C-terminal signature 423 441 1.0E-7 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS22570 6210a83b0b993d9fc42a7ae62de440a5 462 SMART SM00304 187 240 2.0E-4 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS22570 6210a83b0b993d9fc42a7ae62de440a5 462 TIGRFAM TIGR01386 cztS_silS_copS: heavy metal sensor kinase 10 459 8.9E-126 T 22-04-2016 IPR006290 Heavy metal sensor kinase GO:0000160|GO:0004673|GO:0016020 PP4_RS22570 6210a83b0b993d9fc42a7ae62de440a5 462 SMART SM00387 350 462 5.9E-27 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS00285 3dce329f433dbc282b5fe0eb08cc433d 436 SUPERFAMILY SSF48013 1 146 2.49E-36 T 22-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 PP4_RS00285 3dce329f433dbc282b5fe0eb08cc433d 436 Gene3D G3DSA:3.30.70.1170 170 227 4.4E-27 T 22-04-2016 PP4_RS00285 3dce329f433dbc282b5fe0eb08cc433d 436 PANTHER PTHR22807 28 434 3.5E-114 T 22-04-2016 PP4_RS00285 3dce329f433dbc282b5fe0eb08cc433d 436 PANTHER PTHR22807:SF30 28 434 3.5E-114 T 22-04-2016 PP4_RS00285 3dce329f433dbc282b5fe0eb08cc433d 436 Gene3D G3DSA:1.10.940.10 1 144 2.6E-43 T 22-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 PP4_RS00285 3dce329f433dbc282b5fe0eb08cc433d 436 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 413 430 2.1E-26 T 22-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PP4_RS00285 3dce329f433dbc282b5fe0eb08cc433d 436 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 248 258 2.1E-26 T 22-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PP4_RS00285 3dce329f433dbc282b5fe0eb08cc433d 436 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 219 233 2.1E-26 T 22-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PP4_RS00285 3dce329f433dbc282b5fe0eb08cc433d 436 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 365 381 2.1E-26 T 22-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PP4_RS00285 3dce329f433dbc282b5fe0eb08cc433d 436 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 315 327 2.1E-26 T 22-04-2016 IPR023267 RNA (C5-cytosine) methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PP4_RS00285 3dce329f433dbc282b5fe0eb08cc433d 436 Gene3D G3DSA:3.40.50.150 229 430 3.6E-50 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS00285 3dce329f433dbc282b5fe0eb08cc433d 436 ProSitePatterns PS01153 NOL1/NOP2/sun family signature. 314 325 - T 22-04-2016 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site GO:0003723|GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PP4_RS00285 3dce329f433dbc282b5fe0eb08cc433d 436 TIGRFAM TIGR00563 rsmB: 16S rRNA (cytosine(967)-C(5))-methyltransferase 7 430 3.1E-121 T 22-04-2016 IPR004573 rRNA small subunit methyltransferase B GO:0006364|GO:0008649 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PP4_RS00285 3dce329f433dbc282b5fe0eb08cc433d 436 Gene3D G3DSA:1.10.287.730 145 169 4.3E-12 T 22-04-2016 PP4_RS00285 3dce329f433dbc282b5fe0eb08cc433d 436 SUPERFAMILY SSF53335 134 431 1.01E-68 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS00285 3dce329f433dbc282b5fe0eb08cc433d 436 Pfam PF01189 16S rRNA methyltransferase RsmB/F 238 428 3.0E-57 T 22-04-2016 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PP4_RS00285 3dce329f433dbc282b5fe0eb08cc433d 436 Pfam PF01029 NusB family 1 123 4.4E-23 T 22-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 PP4_RS21525 7ebd2dadbfa48164cfb74cc4ebcdea07 321 PIRSF PIRSF002786 1 321 9.1E-74 T 22-04-2016 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 PP4_RS21525 7ebd2dadbfa48164cfb74cc4ebcdea07 321 PANTHER PTHR38831:SF1 1 300 5.9E-21 T 22-04-2016 PP4_RS21525 7ebd2dadbfa48164cfb74cc4ebcdea07 321 PANTHER PTHR38831 1 300 5.9E-21 T 22-04-2016 PP4_RS21525 7ebd2dadbfa48164cfb74cc4ebcdea07 321 SUPERFAMILY SSF158544 102 199 1.26E-19 T 22-04-2016 PP4_RS21525 7ebd2dadbfa48164cfb74cc4ebcdea07 321 SUPERFAMILY SSF158544 203 250 6.8E-9 T 22-04-2016 PP4_RS21525 7ebd2dadbfa48164cfb74cc4ebcdea07 321 Gene3D G3DSA:1.10.40.60 100 199 8.6E-24 T 22-04-2016 PP4_RS21525 7ebd2dadbfa48164cfb74cc4ebcdea07 321 Pfam PF03934 Type II secretion system (T2SS), protein K 33 296 1.5E-48 T 22-04-2016 IPR005628 General secretion pathway protein K GO:0009306|GO:0016021 PP4_RS21525 7ebd2dadbfa48164cfb74cc4ebcdea07 321 Gene3D G3DSA:1.10.40.60 204 256 1.0E-9 T 22-04-2016 PP4_RS16695 eaa01ab550d4fcb5f97bcd8a0697add2 358 PANTHER PTHR30465 2 326 4.3E-83 T 22-04-2016 PP4_RS16695 eaa01ab550d4fcb5f97bcd8a0697add2 358 SUPERFAMILY SSF161098 102 311 8.9E-22 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS16695 eaa01ab550d4fcb5f97bcd8a0697add2 358 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 126 325 3.4E-40 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS16695 eaa01ab550d4fcb5f97bcd8a0697add2 358 PANTHER PTHR30465:SF24 2 326 4.3E-83 T 22-04-2016 PP4_RS16695 eaa01ab550d4fcb5f97bcd8a0697add2 358 Gene3D G3DSA:1.10.3720.10 99 317 7.6E-24 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS06850 1e7ae486cb58c4376011cd239b0843a9 449 Pfam PF04996 Succinylarginine dihydrolase 3 446 1.6E-222 T 22-04-2016 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23|UniPathway: UPA00185 PP4_RS06850 1e7ae486cb58c4376011cd239b0843a9 449 SUPERFAMILY SSF55909 3 447 2.16E-205 T 22-04-2016 PP4_RS06850 1e7ae486cb58c4376011cd239b0843a9 449 Hamap MF_01172 N-succinylarginine dihydrolase [astB]. 1 447 60.519 T 22-04-2016 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23|UniPathway: UPA00185 PP4_RS06850 1e7ae486cb58c4376011cd239b0843a9 449 PANTHER PTHR30420:SF2 2 447 0.0 T 22-04-2016 PP4_RS06850 1e7ae486cb58c4376011cd239b0843a9 449 Gene3D G3DSA:3.75.10.20 1 448 1.5E-227 T 22-04-2016 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23|UniPathway: UPA00185 PP4_RS06850 1e7ae486cb58c4376011cd239b0843a9 449 PANTHER PTHR30420 2 447 0.0 T 22-04-2016 PP4_RS06850 1e7ae486cb58c4376011cd239b0843a9 449 TIGRFAM TIGR03241 arg_catab_astB: succinylarginine dihydrolase 3 446 5.6E-251 T 22-04-2016 IPR007079 Succinylarginine dihydrolase GO:0006525|GO:0009015 KEGG: 00330+3.5.3.23|UniPathway: UPA00185 PP4_RS10805 a7c2845fa3e5e8b4539d33a13ef73996 335 PANTHER PTHR11019 69 329 2.7E-67 T 22-04-2016 PP4_RS10805 a7c2845fa3e5e8b4539d33a13ef73996 335 PANTHER PTHR11019 22 43 2.7E-67 T 22-04-2016 PP4_RS10805 a7c2845fa3e5e8b4539d33a13ef73996 335 SMART SM00342 246 329 4.4E-23 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS10805 a7c2845fa3e5e8b4539d33a13ef73996 335 SUPERFAMILY SSF46689 282 331 1.3E-11 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS10805 a7c2845fa3e5e8b4539d33a13ef73996 335 SUPERFAMILY SSF52317 20 211 2.14E-42 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS10805 a7c2845fa3e5e8b4539d33a13ef73996 335 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 313 329 9.4E-5 T 22-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PP4_RS10805 a7c2845fa3e5e8b4539d33a13ef73996 335 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 298 313 9.4E-5 T 22-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PP4_RS10805 a7c2845fa3e5e8b4539d33a13ef73996 335 Gene3D G3DSA:3.40.50.880 21 236 6.1E-41 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS10805 a7c2845fa3e5e8b4539d33a13ef73996 335 Gene3D G3DSA:1.10.10.60 283 331 1.1E-14 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS10805 a7c2845fa3e5e8b4539d33a13ef73996 335 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 283 325 - T 22-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PP4_RS10805 a7c2845fa3e5e8b4539d33a13ef73996 335 SUPERFAMILY SSF46689 230 280 8.96E-7 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS10805 a7c2845fa3e5e8b4539d33a13ef73996 335 PANTHER PTHR11019:SF90 69 329 2.7E-67 T 22-04-2016 PP4_RS10805 a7c2845fa3e5e8b4539d33a13ef73996 335 PANTHER PTHR11019:SF90 22 43 2.7E-67 T 22-04-2016 PP4_RS10805 a7c2845fa3e5e8b4539d33a13ef73996 335 Pfam PF12833 Helix-turn-helix domain 256 329 4.6E-22 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS10805 a7c2845fa3e5e8b4539d33a13ef73996 335 Pfam PF01965 DJ-1/PfpI family 54 189 6.8E-15 T 22-04-2016 IPR002818 DJ-1/PfpI PP4_RS10805 a7c2845fa3e5e8b4539d33a13ef73996 335 Gene3D G3DSA:1.10.10.60 237 282 1.4E-12 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS26365 207c038727b485db24e6cff6a223473d 221 Gene3D G3DSA:1.10.3720.10 12 215 3.9E-43 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS26365 207c038727b485db24e6cff6a223473d 221 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 48 214 1.3E-15 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS26365 207c038727b485db24e6cff6a223473d 221 SUPERFAMILY SSF161098 14 200 1.57E-39 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS26365 207c038727b485db24e6cff6a223473d 221 PANTHER PTHR30614 1 220 1.1E-61 T 22-04-2016 PP4_RS26365 207c038727b485db24e6cff6a223473d 221 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 109 1.0E-25 T 22-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PP4_RS01605 7aae63d2d6f9831074e919502bf274a1 553 Gene3D G3DSA:1.20.1250.20 30 245 3.4E-16 T 22-04-2016 PP4_RS01605 7aae63d2d6f9831074e919502bf274a1 553 Pfam PF07690 Major Facilitator Superfamily 39 440 4.0E-35 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS01605 7aae63d2d6f9831074e919502bf274a1 553 Gene3D G3DSA:1.20.1250.20 274 485 8.2E-12 T 22-04-2016 PP4_RS01605 7aae63d2d6f9831074e919502bf274a1 553 PANTHER PTHR11360:SF135 92 312 6.2E-132 T 22-04-2016 PP4_RS01605 7aae63d2d6f9831074e919502bf274a1 553 PANTHER PTHR11360:SF135 333 501 6.2E-132 T 22-04-2016 PP4_RS01605 7aae63d2d6f9831074e919502bf274a1 553 PANTHER PTHR11360:SF135 25 68 6.2E-132 T 22-04-2016 PP4_RS01605 7aae63d2d6f9831074e919502bf274a1 553 SUPERFAMILY SSF103473 27 485 3.53E-39 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS01605 7aae63d2d6f9831074e919502bf274a1 553 PANTHER PTHR11360 92 312 6.2E-132 T 22-04-2016 PP4_RS01605 7aae63d2d6f9831074e919502bf274a1 553 PANTHER PTHR11360 333 501 6.2E-132 T 22-04-2016 PP4_RS01605 7aae63d2d6f9831074e919502bf274a1 553 PANTHER PTHR11360 25 68 6.2E-132 T 22-04-2016 PP4_RS14295 a2b492e4dd00e269fa512ba3604c3323 202 Gene3D G3DSA:2.60.120.10 46 183 1.1E-40 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS14295 a2b492e4dd00e269fa512ba3604c3323 202 Gene3D G3DSA:1.20.5.440 1 45 1.2E-17 T 22-04-2016 PP4_RS14295 a2b492e4dd00e269fa512ba3604c3323 202 SUPERFAMILY SSF51182 8 196 7.91E-57 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS14295 a2b492e4dd00e269fa512ba3604c3323 202 PANTHER PTHR12918 1 202 5.3E-31 T 22-04-2016 PP4_RS14295 a2b492e4dd00e269fa512ba3604c3323 202 Pfam PF05995 Cysteine dioxygenase type I 8 160 7.6E-9 T 22-04-2016 IPR010300 Cysteine dioxygenase type I GO:0005506|GO:0016702|GO:0055114 KEGG: 00270+1.13.11.20|KEGG: 00430+1.13.11.20|MetaCyc: PWY-5331|UniPathway: UPA00012 PP4_RS24485 6213cfe92887d3ff60088057924c1807 279 SUPERFAMILY SSF56176 198 277 3.82E-22 T 22-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 PP4_RS24485 6213cfe92887d3ff60088057924c1807 279 PANTHER PTHR22777 15 276 6.4E-114 T 22-04-2016 PP4_RS24485 6213cfe92887d3ff60088057924c1807 279 Gene3D G3DSA:3.10.580.10 51 191 2.6E-18 T 22-04-2016 PP4_RS24485 6213cfe92887d3ff60088057924c1807 279 SUPERFAMILY SSF54631 60 198 7.96E-31 T 22-04-2016 PP4_RS24485 6213cfe92887d3ff60088057924c1807 279 SMART SM01091 200 278 1.4E-27 T 22-04-2016 IPR005170 Transporter-associated domain PP4_RS24485 6213cfe92887d3ff60088057924c1807 279 Pfam PF00571 CBS domain 136 184 1.0E-5 T 22-04-2016 IPR000644 CBS domain PP4_RS24485 6213cfe92887d3ff60088057924c1807 279 Gene3D G3DSA:3.30.465.10 192 277 6.4E-27 T 22-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 PP4_RS24485 6213cfe92887d3ff60088057924c1807 279 Pfam PF03471 Transporter associated domain 202 276 1.2E-19 T 22-04-2016 IPR005170 Transporter-associated domain PP4_RS24485 6213cfe92887d3ff60088057924c1807 279 PANTHER PTHR22777:SF17 15 276 6.4E-114 T 22-04-2016 PP4_RS19280 8e1dfdc7dc726d166642c9275d859850 501 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 466 44.374 T 22-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 PP4_RS19280 8e1dfdc7dc726d166642c9275d859850 501 PANTHER PTHR11907 1 478 1.7E-271 T 22-04-2016 PP4_RS19280 8e1dfdc7dc726d166642c9275d859850 501 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 464 9.0E-162 T 22-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 PP4_RS19280 8e1dfdc7dc726d166642c9275d859850 501 Gene3D G3DSA:3.60.20.10 2 257 1.0E-60 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PP4_RS19280 8e1dfdc7dc726d166642c9275d859850 501 PANTHER PTHR11907:SF4 1 478 1.7E-271 T 22-04-2016 PP4_RS19280 8e1dfdc7dc726d166642c9275d859850 501 SUPERFAMILY SSF53271 250 483 4.06E-71 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like PP4_RS19280 8e1dfdc7dc726d166642c9275d859850 501 SUPERFAMILY SSF56235 2 257 4.29E-70 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PP4_RS19280 8e1dfdc7dc726d166642c9275d859850 501 Pfam PF00156 Phosphoribosyl transferase domain 277 393 1.3E-8 T 22-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 PP4_RS19280 8e1dfdc7dc726d166642c9275d859850 501 Gene3D G3DSA:3.40.50.2020 271 443 6.5E-46 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like PP4_RS19280 8e1dfdc7dc726d166642c9275d859850 501 PIRSF PIRSF000485 1 481 5.5E-161 T 22-04-2016 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|UniPathway: UPA00074 PP4_RS19280 8e1dfdc7dc726d166642c9275d859850 501 Pfam PF13522 Glutamine amidotransferase domain 63 208 1.3E-15 T 22-04-2016 PP4_RS19770 58b2a66fdc989bc75135bcf6a552476a 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 76 91 1.3E-7 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS19770 58b2a66fdc989bc75135bcf6a552476a 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 59 75 1.3E-7 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS19770 58b2a66fdc989bc75135bcf6a552476a 151 PRINTS PR00598 Bacterial regulatory protein MarR family signature 95 111 1.3E-7 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS19770 58b2a66fdc989bc75135bcf6a552476a 151 SUPERFAMILY SSF46785 10 148 2.1E-33 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS19770 58b2a66fdc989bc75135bcf6a552476a 151 Pfam PF01047 MarR family 42 100 2.6E-14 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS19770 58b2a66fdc989bc75135bcf6a552476a 151 Gene3D G3DSA:1.10.10.10 6 149 2.3E-42 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS19770 58b2a66fdc989bc75135bcf6a552476a 151 PANTHER PTHR33164 2 148 2.4E-50 T 22-04-2016 PP4_RS19770 58b2a66fdc989bc75135bcf6a552476a 151 PANTHER PTHR33164:SF5 2 148 2.4E-50 T 22-04-2016 PP4_RS19770 58b2a66fdc989bc75135bcf6a552476a 151 SMART SM00347 35 135 7.2E-24 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS01390 332d76770532a2bc782cdcdaf3effba2 513 PANTHER PTHR30031 6 513 5.4E-266 T 22-04-2016 PP4_RS01390 332d76770532a2bc782cdcdaf3effba2 513 SUPERFAMILY SSF68923 5 198 1.92E-68 T 22-04-2016 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 PP4_RS01390 332d76770532a2bc782cdcdaf3effba2 513 PIRSF PIRSF006294 1 513 6.7E-205 T 22-04-2016 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117|UniPathway: UPA00138 PP4_RS01390 332d76770532a2bc782cdcdaf3effba2 513 ProSitePatterns PS00532 Phosphoenolpyruvate carboxykinase (ATP) signature. 237 252 - T 22-04-2016 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117|UniPathway: UPA00138 PP4_RS01390 332d76770532a2bc782cdcdaf3effba2 513 Gene3D G3DSA:3.90.228.20 200 262 9.5E-106 T 22-04-2016 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 PP4_RS01390 332d76770532a2bc782cdcdaf3effba2 513 Gene3D G3DSA:3.90.228.20 322 512 9.5E-106 T 22-04-2016 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 PP4_RS01390 332d76770532a2bc782cdcdaf3effba2 513 TIGRFAM TIGR00224 pckA: phosphoenolpyruvate carboxykinase (ATP) 6 513 3.3E-181 T 22-04-2016 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117|UniPathway: UPA00138 PP4_RS01390 332d76770532a2bc782cdcdaf3effba2 513 Gene3D G3DSA:3.40.449.10 7 197 1.7E-65 T 22-04-2016 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: REACT_474|UniPathway: UPA00138 PP4_RS01390 332d76770532a2bc782cdcdaf3effba2 513 Pfam PF01293 Phosphoenolpyruvate carboxykinase 7 467 2.3E-186 T 22-04-2016 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117|UniPathway: UPA00138 PP4_RS01390 332d76770532a2bc782cdcdaf3effba2 513 Hamap MF_00453 Phosphoenolpyruvate carboxykinase [ATP] [pckA]. 1 513 50.982 T 22-04-2016 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117|UniPathway: UPA00138 PP4_RS01390 332d76770532a2bc782cdcdaf3effba2 513 PANTHER PTHR30031:SF0 6 513 5.4E-266 T 22-04-2016 PP4_RS01390 332d76770532a2bc782cdcdaf3effba2 513 SUPERFAMILY SSF53795 200 513 2.75E-124 T 22-04-2016 PP4_RS09745 51a4c2d6bbb164fc6f27b4e1a730ca4d 118 Pfam PF00453 Ribosomal protein L20 3 109 2.7E-49 T 22-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 PP4_RS09745 51a4c2d6bbb164fc6f27b4e1a730ca4d 118 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 30.993 T 22-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 PP4_RS09745 51a4c2d6bbb164fc6f27b4e1a730ca4d 118 PRINTS PR00062 Ribosomal protein L20 signature 75 101 7.5E-41 T 22-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 PP4_RS09745 51a4c2d6bbb164fc6f27b4e1a730ca4d 118 PRINTS PR00062 Ribosomal protein L20 signature 42 71 7.5E-41 T 22-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 PP4_RS09745 51a4c2d6bbb164fc6f27b4e1a730ca4d 118 PRINTS PR00062 Ribosomal protein L20 signature 12 41 7.5E-41 T 22-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 PP4_RS09745 51a4c2d6bbb164fc6f27b4e1a730ca4d 118 Gene3D G3DSA:1.10.1900.20 55 116 2.9E-30 T 22-04-2016 PP4_RS09745 51a4c2d6bbb164fc6f27b4e1a730ca4d 118 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 20 72 7.0E-23 T 22-04-2016 PP4_RS09745 51a4c2d6bbb164fc6f27b4e1a730ca4d 118 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 22-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 PP4_RS09745 51a4c2d6bbb164fc6f27b4e1a730ca4d 118 PANTHER PTHR10986:SF12 2 117 5.0E-66 T 22-04-2016 PP4_RS09745 51a4c2d6bbb164fc6f27b4e1a730ca4d 118 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 1.4E-51 T 22-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 PP4_RS09745 51a4c2d6bbb164fc6f27b4e1a730ca4d 118 PANTHER PTHR10986 2 117 5.0E-66 T 22-04-2016 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 PP4_RS09745 51a4c2d6bbb164fc6f27b4e1a730ca4d 118 SUPERFAMILY SSF74731 3 117 1.07E-49 T 22-04-2016 PP4_RS06385 35f59f859e11e410aa87fe892bd221c5 569 ProDom PD043552 KINASE KINASE/PHOSPHATASE ISOCITRATE DEHYDROGENASE 3.1.3.- IDH TRANSFERASE IDHK/P HYDROLASE ENZYME 10 564 0.0 T 22-04-2016 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 PP4_RS06385 35f59f859e11e410aa87fe892bd221c5 569 PIRSF PIRSF000719 1 569 1.2E-282 T 22-04-2016 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 PP4_RS06385 35f59f859e11e410aa87fe892bd221c5 569 Pfam PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) 10 567 1.7E-226 T 22-04-2016 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 PP4_RS06385 35f59f859e11e410aa87fe892bd221c5 569 Hamap MF_00747 Isocitrate dehydrogenase kinase/phosphatase [aceK]. 2 569 41.486 T 22-04-2016 IPR010452 Isocitrate dehydrogenase kinasephosphatase GO:0005737|GO:0006006|GO:0008772|GO:0016791 PP4_RS06385 35f59f859e11e410aa87fe892bd221c5 569 PANTHER PTHR39559 1 569 9.3E-239 T 22-04-2016 PP4_RS10465 571f80b49281fb1fb93a68b203542f40 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 3.0E-10 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS10465 571f80b49281fb1fb93a68b203542f40 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 3.0E-10 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS10465 571f80b49281fb1fb93a68b203542f40 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 3.0E-10 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS10465 571f80b49281fb1fb93a68b203542f40 249 SUPERFAMILY SSF51735 3 247 8.92E-59 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS10465 571f80b49281fb1fb93a68b203542f40 249 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 205 4.7E-5 T 22-04-2016 PP4_RS10465 571f80b49281fb1fb93a68b203542f40 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 10 246 7.6E-47 T 22-04-2016 PP4_RS10465 571f80b49281fb1fb93a68b203542f40 249 PANTHER PTHR24322 8 142 1.2E-38 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS10465 571f80b49281fb1fb93a68b203542f40 249 PANTHER PTHR24322 158 191 1.2E-38 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS10465 571f80b49281fb1fb93a68b203542f40 249 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PP4_RS10465 571f80b49281fb1fb93a68b203542f40 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 3.6E-29 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS10465 571f80b49281fb1fb93a68b203542f40 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 3.6E-29 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS10465 571f80b49281fb1fb93a68b203542f40 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 3.6E-29 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS10465 571f80b49281fb1fb93a68b203542f40 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 3.6E-29 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS10465 571f80b49281fb1fb93a68b203542f40 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 3.6E-29 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS10465 571f80b49281fb1fb93a68b203542f40 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 210 230 3.6E-29 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS10465 571f80b49281fb1fb93a68b203542f40 249 Gene3D G3DSA:3.40.50.720 2 247 2.8E-63 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS17755 f6c02cd0cfc70e63f24f0f74cb433c8e 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 279 308 7.8E-22 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS17755 f6c02cd0cfc70e63f24f0f74cb433c8e 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 386 415 7.8E-22 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS17755 f6c02cd0cfc70e63f24f0f74cb433c8e 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 357 384 7.8E-22 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS17755 f6c02cd0cfc70e63f24f0f74cb433c8e 521 Gene3D G3DSA:3.30.450.20 20 112 7.7E-22 T 22-04-2016 PP4_RS17755 f6c02cd0cfc70e63f24f0f74cb433c8e 521 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 21 110 8.9E-14 T 22-04-2016 IPR000014 PAS domain PP4_RS17755 f6c02cd0cfc70e63f24f0f74cb433c8e 521 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 322 519 6.2E-45 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS17755 f6c02cd0cfc70e63f24f0f74cb433c8e 521 SUPERFAMILY SSF58104 265 521 9.68E-65 T 22-04-2016 PP4_RS17755 f6c02cd0cfc70e63f24f0f74cb433c8e 521 Gene3D G3DSA:1.10.287.950 273 490 4.8E-53 T 22-04-2016 PP4_RS17755 f6c02cd0cfc70e63f24f0f74cb433c8e 521 PANTHER PTHR32089 51 521 2.8E-112 T 22-04-2016 PP4_RS17755 f6c02cd0cfc70e63f24f0f74cb433c8e 521 SUPERFAMILY SSF55785 21 114 3.49E-25 T 22-04-2016 IPR000014 PAS domain PP4_RS17755 f6c02cd0cfc70e63f24f0f74cb433c8e 521 Pfam PF08447 PAS fold 31 113 3.5E-16 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 PP4_RS17755 f6c02cd0cfc70e63f24f0f74cb433c8e 521 SMART SM00283 259 520 9.1E-70 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS17755 f6c02cd0cfc70e63f24f0f74cb433c8e 521 PANTHER PTHR32089:SF64 51 521 2.8E-112 T 22-04-2016 PP4_RS08790 01de12b1b14a968f68623a870f76db54 270 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 111 131 - T 22-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 PP4_RS08790 01de12b1b14a968f68623a870f76db54 270 Gene3D G3DSA:1.10.12.10 212 270 1.0E-29 T 22-04-2016 IPR014748 Crontonase, C-terminal PP4_RS08790 01de12b1b14a968f68623a870f76db54 270 Gene3D G3DSA:3.90.226.10 4 211 2.8E-65 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS08790 01de12b1b14a968f68623a870f76db54 270 Pfam PF00378 Enoyl-CoA hydratase/isomerase 12 269 2.6E-47 T 22-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 PP4_RS08790 01de12b1b14a968f68623a870f76db54 270 SUPERFAMILY SSF52096 4 269 1.18E-78 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS08790 01de12b1b14a968f68623a870f76db54 270 PANTHER PTHR11941:SF43 3 268 2.7E-140 T 22-04-2016 PP4_RS08790 01de12b1b14a968f68623a870f76db54 270 PANTHER PTHR11941 3 268 2.7E-140 T 22-04-2016 PP4_RS10930 b613b2308bbbe6e030f77ff8a1056bf5 355 Gene3D G3DSA:3.40.50.2300 28 141 1.2E-27 T 22-04-2016 PP4_RS10930 b613b2308bbbe6e030f77ff8a1056bf5 355 Gene3D G3DSA:3.40.50.2300 142 340 4.9E-34 T 22-04-2016 PP4_RS10930 b613b2308bbbe6e030f77ff8a1056bf5 355 PANTHER PTHR30036 31 355 5.4E-145 T 22-04-2016 PP4_RS10930 b613b2308bbbe6e030f77ff8a1056bf5 355 Pfam PF13407 Periplasmic binding protein domain 31 308 5.7E-60 T 22-04-2016 IPR025997 Periplasmic binding protein PP4_RS10930 b613b2308bbbe6e030f77ff8a1056bf5 355 PANTHER PTHR30036:SF0 31 355 5.4E-145 T 22-04-2016 PP4_RS10930 b613b2308bbbe6e030f77ff8a1056bf5 355 SUPERFAMILY SSF53822 29 340 1.96E-65 T 22-04-2016 IPR028082 Periplasmic binding protein-like I PP4_RS18715 5cd1d331533383c01e1d4031eb1bac73 267 PANTHER PTHR14237:SF30 4 267 6.6E-81 T 22-04-2016 PP4_RS18715 5cd1d331533383c01e1d4031eb1bac73 267 SUPERFAMILY SSF50800 3 58 8.68E-19 T 22-04-2016 IPR011037 Pyruvate kinase-like, insert domain PP4_RS18715 5cd1d331533383c01e1d4031eb1bac73 267 SUPERFAMILY SSF50800 151 266 8.68E-19 T 22-04-2016 IPR011037 Pyruvate kinase-like, insert domain PP4_RS18715 5cd1d331533383c01e1d4031eb1bac73 267 PANTHER PTHR14237 4 267 6.6E-81 T 22-04-2016 PP4_RS18715 5cd1d331533383c01e1d4031eb1bac73 267 SUPERFAMILY SSF141673 3 133 1.09E-32 T 22-04-2016 PP4_RS18715 5cd1d331533383c01e1d4031eb1bac73 267 Pfam PF03476 MOSC N-terminal beta barrel domain 3 117 2.6E-26 T 22-04-2016 IPR005303 MOSC, N-terminal beta barrel PP4_RS18715 5cd1d331533383c01e1d4031eb1bac73 267 Pfam PF03473 MOSC domain 143 264 2.8E-29 T 22-04-2016 IPR005302 Molybdenum cofactor sulfurase, C-terminal GO:0003824|GO:0030151|GO:0030170 PP4_RS10575 5a9dd51f5a1c024b6d74c7bcc0b115e7 317 PANTHER PTHR33055 7 308 2.4E-33 T 22-04-2016 PP4_RS10575 5a9dd51f5a1c024b6d74c7bcc0b115e7 317 PANTHER PTHR33055:SF3 7 308 2.4E-33 T 22-04-2016 PP4_RS10575 5a9dd51f5a1c024b6d74c7bcc0b115e7 317 Pfam PF01548 Transposase 10 148 8.8E-21 T 22-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 PP4_RS10575 5a9dd51f5a1c024b6d74c7bcc0b115e7 317 Pfam PF02371 Transposase IS116/IS110/IS902 family 194 267 2.3E-17 T 22-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PP4_RS09970 5a9dd51f5a1c024b6d74c7bcc0b115e7 317 PANTHER PTHR33055 7 308 2.4E-33 T 22-04-2016 PP4_RS09970 5a9dd51f5a1c024b6d74c7bcc0b115e7 317 PANTHER PTHR33055:SF3 7 308 2.4E-33 T 22-04-2016 PP4_RS09970 5a9dd51f5a1c024b6d74c7bcc0b115e7 317 Pfam PF01548 Transposase 10 148 8.8E-21 T 22-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 PP4_RS09970 5a9dd51f5a1c024b6d74c7bcc0b115e7 317 Pfam PF02371 Transposase IS116/IS110/IS902 family 194 267 2.3E-17 T 22-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PP4_RS24125 446269b1040ff4dd17f1f0cfd8d524c3 682 PANTHER PTHR18934 1 311 9.4E-107 T 22-04-2016 PP4_RS24125 446269b1040ff4dd17f1f0cfd8d524c3 682 SMART SM00490 89 189 2.2E-20 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS24125 446269b1040ff4dd17f1f0cfd8d524c3 682 SMART SM00847 248 343 3.3E-12 T 22-04-2016 IPR007502 Helicase-associated domain GO:0004386 PP4_RS24125 446269b1040ff4dd17f1f0cfd8d524c3 682 SUPERFAMILY SSF52540 12 292 4.85E-49 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS24125 446269b1040ff4dd17f1f0cfd8d524c3 682 Pfam PF08482 ATP-dependent helicase C-terminal 552 676 6.6E-47 T 22-04-2016 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal PP4_RS24125 446269b1040ff4dd17f1f0cfd8d524c3 682 Pfam PF00271 Helicase conserved C-terminal domain 67 188 1.0E-14 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS24125 446269b1040ff4dd17f1f0cfd8d524c3 682 TIGRFAM TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB 2 676 4.0E-294 T 22-04-2016 IPR010225 RNA helicase, ATP-dependent DEAH box, HrpB-type PP4_RS24125 446269b1040ff4dd17f1f0cfd8d524c3 682 Pfam PF04408 Helicase associated domain (HA2) 249 312 8.3E-10 T 22-04-2016 IPR007502 Helicase-associated domain GO:0004386 PP4_RS24125 446269b1040ff4dd17f1f0cfd8d524c3 682 Gene3D G3DSA:3.40.50.300 63 205 1.1E-17 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS13370 12b67213a8a0025393d888b801fe70c4 445 Gene3D G3DSA:1.20.1250.20 256 430 5.2E-22 T 22-04-2016 PP4_RS13370 12b67213a8a0025393d888b801fe70c4 445 Gene3D G3DSA:1.20.1250.20 18 203 1.9E-37 T 22-04-2016 PP4_RS13370 12b67213a8a0025393d888b801fe70c4 445 ProSitePatterns PS00217 Sugar transport proteins signature 2. 120 145 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PP4_RS13370 12b67213a8a0025393d888b801fe70c4 445 ProSitePatterns PS00216 Sugar transport proteins signature 1. 78 94 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PP4_RS13370 12b67213a8a0025393d888b801fe70c4 445 Pfam PF07690 Major Facilitator Superfamily 29 384 2.0E-42 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS13370 12b67213a8a0025393d888b801fe70c4 445 SUPERFAMILY SSF103473 10 432 1.83E-79 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS13370 12b67213a8a0025393d888b801fe70c4 445 PANTHER PTHR24064 3 445 5.9E-141 T 22-04-2016 PP4_RS13370 12b67213a8a0025393d888b801fe70c4 445 PANTHER PTHR24064:SF234 3 445 5.9E-141 T 22-04-2016 PP4_RS22590 cb1429f290220224bbb59d2101d09d53 158 SUPERFAMILY SSF47240 3 117 5.85E-7 T 22-04-2016 IPR009078 Ferritin-like superfamily PP4_RS22590 cb1429f290220224bbb59d2101d09d53 158 Pfam PF09537 Domain of unknown function (DUF2383) 7 116 9.4E-44 T 22-04-2016 IPR019052 Domain of unknown function DUF2383 PP4_RS22590 cb1429f290220224bbb59d2101d09d53 158 PIRSF PIRSF029477 1 157 1.9E-75 T 22-04-2016 IPR016920 Uncharacterised conserved protein UCP029477 PP4_RS22590 cb1429f290220224bbb59d2101d09d53 158 TIGRFAM TIGR02284 TIGR02284: conserved hypothetical protein 9 151 1.8E-43 T 22-04-2016 IPR011971 Conserved hypothetical protein CHP02284 PP4_RS22590 cb1429f290220224bbb59d2101d09d53 158 Gene3D G3DSA:1.20.1260.10 4 124 2.2E-8 T 22-04-2016 IPR012347 Ferritin-related PP4_RS26905 cf5b007e1582f181283b9c549b5e45f8 517 PANTHER PTHR21248:SF12 410 504 2.3E-164 T 22-04-2016 PP4_RS26905 cf5b007e1582f181283b9c549b5e45f8 517 PANTHER PTHR21248 273 394 2.3E-164 T 22-04-2016 PP4_RS26905 cf5b007e1582f181283b9c549b5e45f8 517 SUPERFAMILY SSF56024 283 473 1.28E-30 T 22-04-2016 PP4_RS26905 cf5b007e1582f181283b9c549b5e45f8 517 Pfam PF13091 PLD-like domain 72 224 5.9E-24 T 22-04-2016 IPR025202 Phospholipase D-like domain PP4_RS26905 cf5b007e1582f181283b9c549b5e45f8 517 Pfam PF13091 PLD-like domain 321 459 2.5E-17 T 22-04-2016 IPR025202 Phospholipase D-like domain PP4_RS26905 cf5b007e1582f181283b9c549b5e45f8 517 Gene3D G3DSA:3.30.870.10 290 462 1.9E-32 T 22-04-2016 PP4_RS26905 cf5b007e1582f181283b9c549b5e45f8 517 SMART SM00155 165 192 8.4E-5 T 22-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 PP4_RS26905 cf5b007e1582f181283b9c549b5e45f8 517 SMART SM00155 409 436 8.1E-5 T 22-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 PP4_RS26905 cf5b007e1582f181283b9c549b5e45f8 517 PANTHER PTHR21248 410 504 2.3E-164 T 22-04-2016 PP4_RS26905 cf5b007e1582f181283b9c549b5e45f8 517 PANTHER PTHR21248 9 254 2.3E-164 T 22-04-2016 PP4_RS26905 cf5b007e1582f181283b9c549b5e45f8 517 Gene3D G3DSA:3.30.870.10 50 240 8.0E-43 T 22-04-2016 PP4_RS26905 cf5b007e1582f181283b9c549b5e45f8 517 PANTHER PTHR21248:SF12 9 254 2.3E-164 T 22-04-2016 PP4_RS26905 cf5b007e1582f181283b9c549b5e45f8 517 PANTHER PTHR21248:SF12 273 394 2.3E-164 T 22-04-2016 PP4_RS26905 cf5b007e1582f181283b9c549b5e45f8 517 SUPERFAMILY SSF56024 43 243 1.41E-46 T 22-04-2016 PP4_RS19205 e5a36fd70db7df994e37bec586718def 323 Pfam PF00149 Calcineurin-like phosphoesterase 8 149 7.8E-10 T 22-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 PP4_RS19205 e5a36fd70db7df994e37bec586718def 323 PANTHER PTHR11668:SF281 1 85 4.0E-23 T 22-04-2016 PP4_RS19205 e5a36fd70db7df994e37bec586718def 323 Gene3D G3DSA:3.60.21.10 200 318 1.8E-41 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS19205 e5a36fd70db7df994e37bec586718def 323 Gene3D G3DSA:3.60.21.10 3 162 1.8E-41 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS19205 e5a36fd70db7df994e37bec586718def 323 SUPERFAMILY SSF56300 6 298 9.15E-34 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS19205 e5a36fd70db7df994e37bec586718def 323 PANTHER PTHR11668 1 85 4.0E-23 T 22-04-2016 PP4_RS12625 991263cbef29613227f7ddb5525dc8d4 232 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 4 217 4.3E-73 T 22-04-2016 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 PP4_RS12625 991263cbef29613227f7ddb5525dc8d4 232 PANTHER PTHR13707 1 230 1.3E-133 T 22-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 PP4_RS12625 991263cbef29613227f7ddb5525dc8d4 232 Pfam PF01144 Coenzyme A transferase 10 218 2.7E-75 T 22-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 PP4_RS12625 991263cbef29613227f7ddb5525dc8d4 232 SMART SM00882 8 219 7.0E-88 T 22-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 PP4_RS12625 991263cbef29613227f7ddb5525dc8d4 232 Gene3D G3DSA:3.40.1080.10 6 218 1.9E-97 T 22-04-2016 PP4_RS12625 991263cbef29613227f7ddb5525dc8d4 232 SUPERFAMILY SSF100950 5 226 6.49E-86 T 22-04-2016 PP4_RS12625 991263cbef29613227f7ddb5525dc8d4 232 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 20 35 - T 22-04-2016 IPR004163 Coenzyme A transferase binding site GO:0008152|GO:0008410 PP4_RS01550 3983b498f9c4f5f8a87240c672050ecb 229 SUPERFAMILY SSF161098 11 207 6.67E-42 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS01550 3983b498f9c4f5f8a87240c672050ecb 229 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 30 222 6.0E-18 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS01550 3983b498f9c4f5f8a87240c672050ecb 229 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 10 116 1.7E-22 T 22-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PP4_RS01550 3983b498f9c4f5f8a87240c672050ecb 229 Gene3D G3DSA:1.10.3720.10 10 222 2.4E-44 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS01550 3983b498f9c4f5f8a87240c672050ecb 229 PANTHER PTHR30450:SF7 1 229 4.0E-129 T 22-04-2016 PP4_RS01550 3983b498f9c4f5f8a87240c672050ecb 229 PANTHER PTHR30450 1 229 4.0E-129 T 22-04-2016 PP4_RS22815 b87a3ad182863fa0f173ec5a94f85aed 185 Gene3D G3DSA:3.40.50.2020 6 183 2.9E-57 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like PP4_RS22815 b87a3ad182863fa0f173ec5a94f85aed 185 PANTHER PTHR22573 5 180 5.2E-58 T 22-04-2016 PP4_RS22815 b87a3ad182863fa0f173ec5a94f85aed 185 Pfam PF00156 Phosphoribosyl transferase domain 21 145 1.7E-22 T 22-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 PP4_RS22815 b87a3ad182863fa0f173ec5a94f85aed 185 SUPERFAMILY SSF53271 15 183 6.03E-46 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like PP4_RS22815 b87a3ad182863fa0f173ec5a94f85aed 185 PANTHER PTHR22573:SF56 5 180 5.2E-58 T 22-04-2016 PP4_RS20400 cc859313c7b89513794d8cf041dbf28c 352 PANTHER PTHR30006 1 352 5.3E-105 T 22-04-2016 PP4_RS20400 cc859313c7b89513794d8cf041dbf28c 352 Gene3D G3DSA:3.40.190.10 137 274 2.3E-23 T 22-04-2016 PP4_RS20400 cc859313c7b89513794d8cf041dbf28c 352 Gene3D G3DSA:3.40.190.10 1 132 1.4E-24 T 22-04-2016 PP4_RS20400 cc859313c7b89513794d8cf041dbf28c 352 Gene3D G3DSA:3.40.190.10 275 319 1.4E-24 T 22-04-2016 PP4_RS20400 cc859313c7b89513794d8cf041dbf28c 352 SUPERFAMILY SSF53850 35 345 5.22E-47 T 22-04-2016 PP4_RS20400 cc859313c7b89513794d8cf041dbf28c 352 PANTHER PTHR30006:SF10 1 352 5.3E-105 T 22-04-2016 PP4_RS20400 cc859313c7b89513794d8cf041dbf28c 352 Pfam PF13343 Bacterial extracellular solute-binding protein 85 333 5.4E-51 T 22-04-2016 PP4_RS09375 48d155ccfcd57004fa8baa7b796c3180 137 PANTHER PTHR33452 1 137 4.8E-49 T 22-04-2016 PP4_RS09375 48d155ccfcd57004fa8baa7b796c3180 137 PANTHER PTHR33452:SF6 1 137 4.8E-49 T 22-04-2016 PP4_RS09375 48d155ccfcd57004fa8baa7b796c3180 137 Pfam PF07681 DoxX 14 94 1.1E-18 T 22-04-2016 IPR032808 DoxX family PP4_RS03200 8431b8bad96a09ce265d2c4768688407 368 PRINTS PR00111 Alpha/beta hydrolase fold signature 202 215 4.0E-15 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS03200 8431b8bad96a09ce265d2c4768688407 368 PRINTS PR00111 Alpha/beta hydrolase fold signature 316 330 4.0E-15 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS03200 8431b8bad96a09ce265d2c4768688407 368 PRINTS PR00111 Alpha/beta hydrolase fold signature 216 229 4.0E-15 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS03200 8431b8bad96a09ce265d2c4768688407 368 PRINTS PR00111 Alpha/beta hydrolase fold signature 158 173 4.0E-15 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS03200 8431b8bad96a09ce265d2c4768688407 368 Pfam PF00561 alpha/beta hydrolase fold 134 353 2.5E-26 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS03200 8431b8bad96a09ce265d2c4768688407 368 Pfam PF00364 Biotin-requiring enzyme 6 77 5.9E-15 T 22-04-2016 IPR000089 Biotin/lipoyl attachment PP4_RS03200 8431b8bad96a09ce265d2c4768688407 368 Gene3D G3DSA:2.40.50.100 3 90 8.8E-26 T 22-04-2016 PP4_RS03200 8431b8bad96a09ce265d2c4768688407 368 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 29 58 - T 22-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site PP4_RS03200 8431b8bad96a09ce265d2c4768688407 368 SUPERFAMILY SSF51230 3 93 4.58E-23 T 22-04-2016 IPR011053 Single hybrid motif PP4_RS03200 8431b8bad96a09ce265d2c4768688407 368 Gene3D G3DSA:3.40.50.1820 110 368 1.1E-58 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS03200 8431b8bad96a09ce265d2c4768688407 368 PANTHER PTHR10992 117 367 7.3E-51 T 22-04-2016 PP4_RS03200 8431b8bad96a09ce265d2c4768688407 368 SUPERFAMILY SSF53474 111 367 1.62E-57 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS07440 bb909878a034c38567f28c6e58ef5d29 242 PANTHER PTHR28047:SF1 1 232 3.7E-69 T 22-04-2016 PP4_RS07440 bb909878a034c38567f28c6e58ef5d29 242 PANTHER PTHR28047 1 232 3.7E-69 T 22-04-2016 PP4_RS00240 68aa4d05091a323699ceb8f7e6d4b2d7 539 PANTHER PTHR23508 439 539 1.7E-238 T 22-04-2016 PP4_RS00240 68aa4d05091a323699ceb8f7e6d4b2d7 539 PANTHER PTHR23508 18 341 1.7E-238 T 22-04-2016 PP4_RS00240 68aa4d05091a323699ceb8f7e6d4b2d7 539 Pfam PF00083 Sugar (and other) transporter 434 538 3.5E-5 T 22-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 PP4_RS00240 68aa4d05091a323699ceb8f7e6d4b2d7 539 Pfam PF00083 Sugar (and other) transporter 26 333 5.8E-30 T 22-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 PP4_RS00240 68aa4d05091a323699ceb8f7e6d4b2d7 539 Gene3D G3DSA:1.20.1250.20 437 533 4.2E-25 T 22-04-2016 PP4_RS00240 68aa4d05091a323699ceb8f7e6d4b2d7 539 Gene3D G3DSA:1.20.1250.20 251 339 4.2E-25 T 22-04-2016 PP4_RS00240 68aa4d05091a323699ceb8f7e6d4b2d7 539 Gene3D G3DSA:1.20.1250.20 21 224 2.7E-23 T 22-04-2016 PP4_RS00240 68aa4d05091a323699ceb8f7e6d4b2d7 539 PANTHER PTHR23508:SF7 439 539 1.7E-238 T 22-04-2016 PP4_RS00240 68aa4d05091a323699ceb8f7e6d4b2d7 539 PANTHER PTHR23508:SF7 18 341 1.7E-238 T 22-04-2016 PP4_RS00240 68aa4d05091a323699ceb8f7e6d4b2d7 539 ProSitePatterns PS00217 Sugar transport proteins signature 2. 133 158 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PP4_RS00240 68aa4d05091a323699ceb8f7e6d4b2d7 539 SUPERFAMILY SSF103473 441 537 7.72E-65 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS00240 68aa4d05091a323699ceb8f7e6d4b2d7 539 SUPERFAMILY SSF103473 19 340 7.72E-65 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS20180 00dd17177066ad69b2851c58034dfe51 358 Pfam PF01008 Initiation factor 2 subunit family 53 341 2.6E-68 T 22-04-2016 IPR000649 Initiation factor 2B-related GO:0044237 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 PP4_RS20180 00dd17177066ad69b2851c58034dfe51 358 PANTHER PTHR10233:SF6 14 358 3.9E-139 T 22-04-2016 PP4_RS20180 00dd17177066ad69b2851c58034dfe51 358 PANTHER PTHR10233 14 358 3.9E-139 T 22-04-2016 PP4_RS20180 00dd17177066ad69b2851c58034dfe51 358 TIGRFAM TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 14 341 3.9E-124 T 22-04-2016 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 PP4_RS20180 00dd17177066ad69b2851c58034dfe51 358 SUPERFAMILY SSF100950 10 343 1.02E-108 T 22-04-2016 PP4_RS20180 00dd17177066ad69b2851c58034dfe51 358 Gene3D G3DSA:3.40.50.10470 166 348 1.1E-63 T 22-04-2016 PP4_RS20180 00dd17177066ad69b2851c58034dfe51 358 Gene3D G3DSA:1.20.120.420 13 165 4.0E-45 T 22-04-2016 IPR027363 Methylthioribose-1-phosphate isomerase-like, N-terminal domain KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 PP4_RS20180 00dd17177066ad69b2851c58034dfe51 358 Hamap MF_01678 Putative methylthioribose-1-phosphate isomerase [mtnA]. 10 352 36.724 T 22-04-2016 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 PP4_RS20180 00dd17177066ad69b2851c58034dfe51 358 TIGRFAM TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 38 341 8.1E-94 T 22-04-2016 IPR011559 Initiation factor 2B alpha/beta/delta GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|UniPathway: UPA00904 PP4_RS08770 eea10d7b705224fcdc27dc814c157737 101 Pfam PF07978 NIPSNAP 7 99 4.2E-23 T 22-04-2016 IPR012577 NIPSNAP PP4_RS08770 eea10d7b705224fcdc27dc814c157737 101 SUPERFAMILY SSF54909 2 99 4.72E-21 T 22-04-2016 IPR011008 Dimeric alpha-beta barrel PP4_RS08770 eea10d7b705224fcdc27dc814c157737 101 Gene3D G3DSA:3.30.70.900 7 98 6.3E-5 T 22-04-2016 PP4_RS00030 fc23547019325c0fd62edbbb42f5958f 652 Gene3D G3DSA:3.30.420.10 254 452 9.9E-23 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PP4_RS00030 fc23547019325c0fd62edbbb42f5958f 652 Pfam PF00665 Integrase core domain 256 390 1.6E-14 T 22-04-2016 IPR001584 Integrase, catalytic core GO:0015074 PP4_RS00030 fc23547019325c0fd62edbbb42f5958f 652 SUPERFAMILY SSF53098 253 453 3.03E-20 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PP4_RS00030 fc23547019325c0fd62edbbb42f5958f 652 Gene3D G3DSA:1.10.10.60 171 240 8.5E-6 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS07970 bf6529cc0f83226fcd5536ae3c3a2fca 201 PANTHER PTHR19308 24 201 1.7E-79 T 22-04-2016 PP4_RS07970 bf6529cc0f83226fcd5536ae3c3a2fca 201 SUPERFAMILY SSF55961 15 200 3.76E-37 T 22-04-2016 PP4_RS07970 bf6529cc0f83226fcd5536ae3c3a2fca 201 Pfam PF01852 START domain 22 200 1.2E-10 T 22-04-2016 IPR002913 START domain GO:0008289 PP4_RS07970 bf6529cc0f83226fcd5536ae3c3a2fca 201 Gene3D G3DSA:3.30.530.20 16 200 4.4E-34 T 22-04-2016 IPR023393 START-like domain PP4_RS07970 bf6529cc0f83226fcd5536ae3c3a2fca 201 PANTHER PTHR19308:SF1 24 201 1.7E-79 T 22-04-2016 PP4_RS07970 bf6529cc0f83226fcd5536ae3c3a2fca 201 PIRSF PIRSF039033 2 201 9.9E-68 T 22-04-2016 IPR028347 START domain-containing protein PP4_RS12400 c04889d589951521dd576d6571a1a0e0 240 PANTHER PTHR37625 1 174 9.1E-24 T 22-04-2016 PP4_RS12400 c04889d589951521dd576d6571a1a0e0 240 Pfam PF12790 Type VI secretion lipoprotein, VasD, EvfM, TssJ, VC_A0113 18 161 6.4E-33 T 22-04-2016 IPR017734 Type VI secretion system, lipoprotein SciN PP4_RS12400 c04889d589951521dd576d6571a1a0e0 240 TIGRFAM TIGR03352 VI_chp_3: type VI secretion lipoprotein, VC_A0113 family 12 173 1.9E-39 T 22-04-2016 IPR017734 Type VI secretion system, lipoprotein SciN PP4_RS10700 3443cc1c1a55604008e25f18c45eb140 359 Gene3D G3DSA:3.30.450.20 214 336 1.1E-32 T 22-04-2016 PP4_RS10700 3443cc1c1a55604008e25f18c45eb140 359 Pfam PF01381 Helix-turn-helix 10 63 2.4E-9 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS10700 3443cc1c1a55604008e25f18c45eb140 359 PANTHER PTHR24423 77 358 1.5E-37 T 22-04-2016 PP4_RS10700 3443cc1c1a55604008e25f18c45eb140 359 Gene3D G3DSA:3.30.450.20 87 213 1.3E-21 T 22-04-2016 PP4_RS10700 3443cc1c1a55604008e25f18c45eb140 359 Gene3D G3DSA:1.10.260.40 4 66 1.9E-12 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS10700 3443cc1c1a55604008e25f18c45eb140 359 Pfam PF08447 PAS fold 248 331 1.4E-19 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 PP4_RS10700 3443cc1c1a55604008e25f18c45eb140 359 Pfam PF08447 PAS fold 122 204 1.4E-14 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 PP4_RS10700 3443cc1c1a55604008e25f18c45eb140 359 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 220 345 2.8E-30 T 22-04-2016 IPR000014 PAS domain PP4_RS10700 3443cc1c1a55604008e25f18c45eb140 359 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 141 218 7.7E-7 T 22-04-2016 IPR000014 PAS domain PP4_RS10700 3443cc1c1a55604008e25f18c45eb140 359 SUPERFAMILY SSF55785 107 212 5.09E-16 T 22-04-2016 IPR000014 PAS domain PP4_RS10700 3443cc1c1a55604008e25f18c45eb140 359 SMART SM00086 296 338 2.0E-10 T 22-04-2016 IPR001610 PAC motif PP4_RS10700 3443cc1c1a55604008e25f18c45eb140 359 SMART SM00086 169 211 1.2E-8 T 22-04-2016 IPR001610 PAC motif PP4_RS10700 3443cc1c1a55604008e25f18c45eb140 359 SMART SM00530 9 63 1.8E-8 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS10700 3443cc1c1a55604008e25f18c45eb140 359 SUPERFAMILY SSF47413 4 68 5.63E-10 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS10700 3443cc1c1a55604008e25f18c45eb140 359 SUPERFAMILY SSF55785 209 336 2.23E-32 T 22-04-2016 IPR000014 PAS domain PP4_RS10700 3443cc1c1a55604008e25f18c45eb140 359 SMART SM00091 223 289 5.5E-11 T 22-04-2016 IPR000014 PAS domain PP4_RS01125 6979d72fc6e086c1e3dc8c26d2a4dce8 468 SUPERFAMILY SSF160387 372 462 8.89E-14 T 22-04-2016 PP4_RS01125 6979d72fc6e086c1e3dc8c26d2a4dce8 468 PANTHER PTHR30024 1 395 1.8E-169 T 22-04-2016 PP4_RS01125 6979d72fc6e086c1e3dc8c26d2a4dce8 468 Gene3D G3DSA:3.40.190.10 126 249 9.5E-16 T 22-04-2016 PP4_RS01125 6979d72fc6e086c1e3dc8c26d2a4dce8 468 Pfam PF13379 NMT1-like family 61 267 6.9E-14 T 22-04-2016 PP4_RS01125 6979d72fc6e086c1e3dc8c26d2a4dce8 468 PANTHER PTHR30024:SF4 1 395 1.8E-169 T 22-04-2016 PP4_RS01125 6979d72fc6e086c1e3dc8c26d2a4dce8 468 SUPERFAMILY SSF53850 58 326 2.12E-36 T 22-04-2016 PP4_RS01040 2c833c070fd06bd21da9965f3809bef2 430 Pfam PF13519 von Willebrand factor type A domain 224 358 5.5E-7 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS01040 2c833c070fd06bd21da9965f3809bef2 430 SMART SM00327 220 418 3.1E-5 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS01040 2c833c070fd06bd21da9965f3809bef2 430 SUPERFAMILY SSF53300 223 233 9.76E-15 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS01040 2c833c070fd06bd21da9965f3809bef2 430 SUPERFAMILY SSF53300 270 420 9.76E-15 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS01040 2c833c070fd06bd21da9965f3809bef2 430 Gene3D G3DSA:3.40.50.410 224 233 1.9E-9 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS01040 2c833c070fd06bd21da9965f3809bef2 430 Gene3D G3DSA:3.40.50.410 268 422 1.9E-9 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS25290 d4df4e4df8fedef1462b17d1efd920bb 461 Gene3D G3DSA:3.40.50.300 207 366 3.0E-43 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25290 d4df4e4df8fedef1462b17d1efd920bb 461 PANTHER PTHR24031 1 461 5.1E-249 T 22-04-2016 PP4_RS25290 d4df4e4df8fedef1462b17d1efd920bb 461 Pfam PF03880 DbpA RNA binding domain 389 459 8.2E-26 T 22-04-2016 IPR005580 DbpA, RNA-binding domain PP4_RS25290 d4df4e4df8fedef1462b17d1efd920bb 461 SMART SM00490 258 339 6.6E-26 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS25290 d4df4e4df8fedef1462b17d1efd920bb 461 Pfam PF00271 Helicase conserved C-terminal domain 237 339 3.3E-23 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS25290 d4df4e4df8fedef1462b17d1efd920bb 461 Pfam PF00270 DEAD/DEAH box helicase 30 196 6.7E-45 T 22-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 PP4_RS25290 d4df4e4df8fedef1462b17d1efd920bb 461 ProSitePatterns PS00039 DEAD-box subfamily ATP-dependent helicases signature. 154 162 - T 22-04-2016 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site PP4_RS25290 d4df4e4df8fedef1462b17d1efd920bb 461 Gene3D G3DSA:3.40.50.300 3 206 4.0E-75 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25290 d4df4e4df8fedef1462b17d1efd920bb 461 SMART SM00487 25 222 4.7E-57 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PP4_RS25290 d4df4e4df8fedef1462b17d1efd920bb 461 PANTHER PTHR24031:SF180 1 461 5.1E-249 T 22-04-2016 PP4_RS25290 d4df4e4df8fedef1462b17d1efd920bb 461 SUPERFAMILY SSF52540 74 358 1.99E-68 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS02615 c8eb30673f1b01a18f414a32a2ecdf5a 118 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 118 26.411 T 22-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02615 c8eb30673f1b01a18f414a32a2ecdf5a 118 ProSitePatterns PS00646 Ribosomal protein S13 signature. 87 100 - T 22-04-2016 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 PP4_RS02615 c8eb30673f1b01a18f414a32a2ecdf5a 118 Gene3D G3DSA:1.10.8.50 1 71 7.3E-31 T 22-04-2016 PP4_RS02615 c8eb30673f1b01a18f414a32a2ecdf5a 118 PANTHER PTHR10871 1 118 3.9E-68 T 22-04-2016 PP4_RS02615 c8eb30673f1b01a18f414a32a2ecdf5a 118 Pfam PF00416 Ribosomal protein S13/S18 3 108 8.6E-33 T 22-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02615 c8eb30673f1b01a18f414a32a2ecdf5a 118 SUPERFAMILY SSF46946 2 114 3.53E-47 T 22-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 PP4_RS02615 c8eb30673f1b01a18f414a32a2ecdf5a 118 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 114 3.3E-54 T 22-04-2016 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02615 c8eb30673f1b01a18f414a32a2ecdf5a 118 Gene3D G3DSA:4.10.910.10 73 118 2.2E-26 T 22-04-2016 IPR027437 30s ribosomal protein S13, C-terminal PP4_RS02615 c8eb30673f1b01a18f414a32a2ecdf5a 118 PIRSF PIRSF002134 1 118 6.1E-44 T 22-04-2016 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS20895 119de09b5c5be89befa80c7315abc31e 285 Pfam PF01551 Peptidase family M23 185 278 7.5E-31 T 22-04-2016 IPR016047 Peptidase M23 PP4_RS20895 119de09b5c5be89befa80c7315abc31e 285 PANTHER PTHR21666:SF222 137 283 2.9E-41 T 22-04-2016 PP4_RS20895 119de09b5c5be89befa80c7315abc31e 285 SMART SM00257 58 102 8.7E-12 T 22-04-2016 IPR018392 LysM domain PP4_RS20895 119de09b5c5be89befa80c7315abc31e 285 PANTHER PTHR21666 137 283 2.9E-41 T 22-04-2016 PP4_RS20895 119de09b5c5be89befa80c7315abc31e 285 Pfam PF01476 LysM domain 59 100 5.8E-12 T 22-04-2016 IPR018392 LysM domain PP4_RS20895 119de09b5c5be89befa80c7315abc31e 285 Gene3D G3DSA:3.10.350.10 58 100 2.3E-14 T 22-04-2016 IPR018392 LysM domain PP4_RS20895 119de09b5c5be89befa80c7315abc31e 285 SUPERFAMILY SSF51261 59 282 2.04E-52 T 22-04-2016 IPR011055 Duplicated hybrid motif PP4_RS20895 119de09b5c5be89befa80c7315abc31e 285 Gene3D G3DSA:2.70.70.10 156 283 3.3E-39 T 22-04-2016 PP4_RS16125 9acca635f69faa16c574f674d1897d48 174 PANTHER PTHR30173 1 170 1.8E-31 T 22-04-2016 PP4_RS16125 9acca635f69faa16c574f674d1897d48 174 Pfam PF08281 Sigma-70, region 4 113 165 5.5E-14 T 22-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS16125 9acca635f69faa16c574f674d1897d48 174 Gene3D G3DSA:1.10.1740.10 8 80 2.0E-11 T 22-04-2016 PP4_RS16125 9acca635f69faa16c574f674d1897d48 174 Gene3D G3DSA:1.10.10.10 110 170 6.3E-13 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16125 9acca635f69faa16c574f674d1897d48 174 SUPERFAMILY SSF88946 8 75 1.57E-13 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS16125 9acca635f69faa16c574f674d1897d48 174 Pfam PF04542 Sigma-70 region 2 15 79 4.1E-12 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS16125 9acca635f69faa16c574f674d1897d48 174 SUPERFAMILY SSF88659 95 169 8.29E-14 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS16125 9acca635f69faa16c574f674d1897d48 174 PANTHER PTHR30173:SF9 1 170 1.8E-31 T 22-04-2016 PP4_RS16125 9acca635f69faa16c574f674d1897d48 174 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 14 162 3.9E-23 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS22915 d4e0c2619e01717f3220eb332ec20ae7 313 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 4 313 3.6E-124 T 22-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 PP4_RS22915 d4e0c2619e01717f3220eb332ec20ae7 313 Gene3D G3DSA:3.40.50.2020 2 159 2.2E-74 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like PP4_RS22915 d4e0c2619e01717f3220eb332ec20ae7 313 PANTHER PTHR10210 2 313 3.6E-182 T 22-04-2016 PP4_RS22915 d4e0c2619e01717f3220eb332ec20ae7 313 PANTHER PTHR10210:SF41 2 313 3.6E-182 T 22-04-2016 PP4_RS22915 d4e0c2619e01717f3220eb332ec20ae7 313 Gene3D G3DSA:3.40.50.2020 160 286 2.3E-56 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like PP4_RS22915 d4e0c2619e01717f3220eb332ec20ae7 313 SUPERFAMILY SSF53271 69 305 8.21E-66 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like PP4_RS22915 d4e0c2619e01717f3220eb332ec20ae7 313 Hamap MF_00583_B Ribose-phosphate pyrophosphokinase [prs]. 4 313 48.286 T 22-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 PP4_RS22915 d4e0c2619e01717f3220eb332ec20ae7 313 Pfam PF14572 Phosphoribosyl synthetase-associated domain 202 313 1.0E-34 T 22-04-2016 IPR005946 Ribose-phosphate diphosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 PP4_RS22915 d4e0c2619e01717f3220eb332ec20ae7 313 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 4 121 4.6E-48 T 22-04-2016 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|UniPathway: UPA00087 PP4_RS22915 d4e0c2619e01717f3220eb332ec20ae7 313 SMART SM01400 4 121 2.3E-76 T 22-04-2016 PP4_RS22915 d4e0c2619e01717f3220eb332ec20ae7 313 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 129 144 - T 22-04-2016 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: REACT_474|UniPathway: UPA00087 PP4_RS08335 ce84de78b8ecdc978ff55ec7be110179 165 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 22 163 4.7E-50 T 22-04-2016 PP4_RS08335 ce84de78b8ecdc978ff55ec7be110179 165 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 122 140 - T 22-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 PP4_RS08335 ce84de78b8ecdc978ff55ec7be110179 165 Gene3D G3DSA:3.40.30.10 85 162 6.5E-8 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS08335 ce84de78b8ecdc978ff55ec7be110179 165 PANTHER PTHR10371:SF7 1 164 2.6E-109 T 22-04-2016 PP4_RS08335 ce84de78b8ecdc978ff55ec7be110179 165 SUPERFAMILY SSF52833 14 164 8.5E-48 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS08335 ce84de78b8ecdc978ff55ec7be110179 165 PANTHER PTHR10371 1 164 2.6E-109 T 22-04-2016 PP4_RS08335 ce84de78b8ecdc978ff55ec7be110179 165 TIGRFAM TIGR01958 nuoE_fam: NADH-quinone oxidoreductase, E subunit 21 164 7.2E-49 T 22-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 PP4_RS08335 ce84de78b8ecdc978ff55ec7be110179 165 PIRSF PIRSF000216 2 165 4.3E-53 T 22-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 PP4_RS00340 5a3a2b00aff0823ecc22852860124bbc 307 SUPERFAMILY SSF53850 21 293 1.66E-80 T 22-04-2016 PP4_RS00340 5a3a2b00aff0823ecc22852860124bbc 307 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 29 278 5.6E-55 T 22-04-2016 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 PP4_RS00340 5a3a2b00aff0823ecc22852860124bbc 307 PANTHER PTHR30177 26 283 1.7E-88 T 22-04-2016 PP4_RS00340 5a3a2b00aff0823ecc22852860124bbc 307 Gene3D G3DSA:3.40.190.100 115 231 3.1E-22 T 22-04-2016 PP4_RS00340 5a3a2b00aff0823ecc22852860124bbc 307 PANTHER PTHR30177:SF6 26 283 1.7E-88 T 22-04-2016 PP4_RS00340 5a3a2b00aff0823ecc22852860124bbc 307 TIGRFAM TIGR03414 ABC_choline_bnd: choline ABC transporter, periplasmic binding protein 21 307 5.0E-126 T 22-04-2016 IPR017783 ABC transporter, choline, substrate-binding protein GO:0015871|GO:0033265|GO:0042597 PP4_RS00340 5a3a2b00aff0823ecc22852860124bbc 307 Gene3D G3DSA:3.40.190.10 232 294 2.7E-41 T 22-04-2016 PP4_RS00340 5a3a2b00aff0823ecc22852860124bbc 307 Gene3D G3DSA:3.40.190.10 23 110 2.7E-41 T 22-04-2016 PP4_RS01975 f45802997ba88071dc54c836ac490a73 295 PANTHER PTHR22911 1 295 7.1E-134 T 22-04-2016 PP4_RS01975 f45802997ba88071dc54c836ac490a73 295 Pfam PF00892 EamA-like transporter family 8 141 7.2E-17 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS01975 f45802997ba88071dc54c836ac490a73 295 TIGRFAM TIGR00688 rarD: protein RarD 8 260 3.6E-74 T 22-04-2016 IPR004626 RarD protein GO:0005215|GO:0005887|GO:0006810 PP4_RS01975 f45802997ba88071dc54c836ac490a73 295 SUPERFAMILY SSF103481 46 145 1.7E-14 T 22-04-2016 PP4_RS01975 f45802997ba88071dc54c836ac490a73 295 SUPERFAMILY SSF103481 209 285 3.66E-10 T 22-04-2016 PP4_RS01975 f45802997ba88071dc54c836ac490a73 295 PANTHER PTHR22911:SF41 1 295 7.1E-134 T 22-04-2016 PP4_RS26935 674e074932cc5789967212e1a5d935f2 535 Gene3D G3DSA:3.90.76.10 38 218 4.6E-42 T 22-04-2016 PP4_RS26935 674e074932cc5789967212e1a5d935f2 535 PANTHER PTHR30290:SF14 1 535 1.3E-185 T 22-04-2016 PP4_RS26935 674e074932cc5789967212e1a5d935f2 535 PANTHER PTHR30290 1 535 1.3E-185 T 22-04-2016 PP4_RS26935 674e074932cc5789967212e1a5d935f2 535 PIRSF PIRSF002741 24 535 7.3E-110 T 22-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 PP4_RS26935 674e074932cc5789967212e1a5d935f2 535 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 78 100 - T 22-04-2016 IPR023765 Solute-binding protein family 5, conserved site PP4_RS26935 674e074932cc5789967212e1a5d935f2 535 SUPERFAMILY SSF53850 30 532 2.28E-139 T 22-04-2016 PP4_RS26935 674e074932cc5789967212e1a5d935f2 535 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 72 451 1.3E-91 T 22-04-2016 IPR000914 Solute-binding protein family 5 domain PP4_RS26935 674e074932cc5789967212e1a5d935f2 535 Gene3D G3DSA:3.10.105.10 289 504 1.1E-60 T 22-04-2016 PP4_RS22035 881b29cd040a5a8dc74323baa1716a60 95 PANTHER PTHR15004:SF0 7 95 6.7E-30 T 22-04-2016 PP4_RS22035 881b29cd040a5a8dc74323baa1716a60 95 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 2 95 22.567 T 22-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 PP4_RS22035 881b29cd040a5a8dc74323baa1716a60 95 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 4 95 2.1E-29 T 22-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 PP4_RS22035 881b29cd040a5a8dc74323baa1716a60 95 SUPERFAMILY SSF141000 4 93 2.22E-28 T 22-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 PP4_RS22035 881b29cd040a5a8dc74323baa1716a60 95 PANTHER PTHR15004 7 95 6.7E-30 T 22-04-2016 PP4_RS22035 881b29cd040a5a8dc74323baa1716a60 95 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 19 90 7.1E-18 T 22-04-2016 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 PP4_RS26160 961e35f55dfc3c7214ce4d9c661dd68e 613 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 507 518 - T 22-04-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PP4_RS26160 961e35f55dfc3c7214ce4d9c661dd68e 613 PANTHER PTHR21000 1 369 0.0 T 22-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PP4_RS26160 961e35f55dfc3c7214ce4d9c661dd68e 613 PANTHER PTHR21000 404 612 0.0 T 22-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PP4_RS26160 961e35f55dfc3c7214ce4d9c661dd68e 613 TIGRFAM TIGR00110 ilvD: dihydroxy-acid dehydratase 18 606 3.1E-250 T 22-04-2016 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PP4_RS26160 961e35f55dfc3c7214ce4d9c661dd68e 613 Hamap MF_00012 Dihydroxy-acid dehydratase [ilvD]. 4 606 44.681 T 22-04-2016 IPR004404 Dihydroxy-acid dehydratase GO:0004160|GO:0009082 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PP4_RS26160 961e35f55dfc3c7214ce4d9c661dd68e 613 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 122 132 - T 22-04-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PP4_RS26160 961e35f55dfc3c7214ce4d9c661dd68e 613 Pfam PF00920 Dehydratase family 34 603 2.2E-216 T 22-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PP4_RS26160 961e35f55dfc3c7214ce4d9c661dd68e 613 SUPERFAMILY SSF143975 3 418 6.93E-136 T 22-04-2016 PP4_RS26160 961e35f55dfc3c7214ce4d9c661dd68e 613 PANTHER PTHR21000:SF11 1 369 0.0 T 22-04-2016 PP4_RS26160 961e35f55dfc3c7214ce4d9c661dd68e 613 PANTHER PTHR21000:SF11 404 612 0.0 T 22-04-2016 PP4_RS26160 961e35f55dfc3c7214ce4d9c661dd68e 613 SUPERFAMILY SSF52016 419 606 1.18E-59 T 22-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel PP4_RS13570 cc04113c875f86ee678a0218471b7e0f 250 PANTHER PTHR11941 6 250 2.5E-69 T 22-04-2016 PP4_RS13570 cc04113c875f86ee678a0218471b7e0f 250 Pfam PF00378 Enoyl-CoA hydratase/isomerase 9 250 4.8E-45 T 22-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 PP4_RS13570 cc04113c875f86ee678a0218471b7e0f 250 SUPERFAMILY SSF52096 2 250 2.64E-68 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS13570 cc04113c875f86ee678a0218471b7e0f 250 Gene3D G3DSA:3.90.226.10 2 250 2.4E-66 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS05935 e11587dd9f482335c8249427dd37a0ad 268 TIGRFAM TIGR02795 tol_pal_ybgF: tol-pal system protein YbgF 148 265 3.8E-42 T 22-04-2016 IPR014162 Tol-Pal system, YbgF PP4_RS05935 e11587dd9f482335c8249427dd37a0ad 268 Pfam PF13525 Outer membrane lipoprotein 148 232 1.1E-9 T 22-04-2016 PP4_RS05935 e11587dd9f482335c8249427dd37a0ad 268 PANTHER PTHR26312:SF74 36 50 9.6E-51 T 22-04-2016 PP4_RS05935 e11587dd9f482335c8249427dd37a0ad 268 PANTHER PTHR26312:SF74 159 266 9.6E-51 T 22-04-2016 PP4_RS05935 e11587dd9f482335c8249427dd37a0ad 268 SUPERFAMILY SSF48452 144 261 1.63E-13 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS05935 e11587dd9f482335c8249427dd37a0ad 268 Gene3D G3DSA:1.25.40.10 150 259 2.4E-13 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS05935 e11587dd9f482335c8249427dd37a0ad 268 PANTHER PTHR26312 36 50 9.6E-51 T 22-04-2016 PP4_RS05935 e11587dd9f482335c8249427dd37a0ad 268 PANTHER PTHR26312 159 266 9.6E-51 T 22-04-2016 PP4_RS05935 e11587dd9f482335c8249427dd37a0ad 268 Pfam PF16331 TolA binding protein trimerisation 53 111 5.4E-9 T 22-04-2016 IPR032519 YbgF, trimerisation domain GO:0070206 PP4_RS20735 6e8fe0b1047c78a1ae5db9aac378d2c8 452 Gene3D G3DSA:3.40.50.150 273 450 9.4E-59 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS20735 6e8fe0b1047c78a1ae5db9aac378d2c8 452 Pfam PF01938 TRAM domain 25 78 4.5E-7 T 22-04-2016 IPR002792 TRAM domain PP4_RS20735 6e8fe0b1047c78a1ae5db9aac378d2c8 452 Hamap MF_01010 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD [rlmD]. 30 452 64.325 T 22-04-2016 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 PP4_RS20735 6e8fe0b1047c78a1ae5db9aac378d2c8 452 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 279 448 1.2E-25 T 22-04-2016 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 PP4_RS20735 6e8fe0b1047c78a1ae5db9aac378d2c8 452 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 383 413 - T 22-04-2016 IPR030390 RNA methyltransferase TrmA, active site PP4_RS20735 6e8fe0b1047c78a1ae5db9aac378d2c8 452 PANTHER PTHR11061 18 450 1.4E-116 T 22-04-2016 PP4_RS20735 6e8fe0b1047c78a1ae5db9aac378d2c8 452 PANTHER PTHR11061:SF30 18 450 1.4E-116 T 22-04-2016 PP4_RS20735 6e8fe0b1047c78a1ae5db9aac378d2c8 452 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 274 444 7.9E-62 T 22-04-2016 IPR001566 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD GO:0003723|GO:0006396|GO:0008173 PP4_RS20735 6e8fe0b1047c78a1ae5db9aac378d2c8 452 Gene3D G3DSA:2.40.50.140 20 99 1.6E-23 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS20735 6e8fe0b1047c78a1ae5db9aac378d2c8 452 SUPERFAMILY SSF50249 16 78 1.6E-11 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS20735 6e8fe0b1047c78a1ae5db9aac378d2c8 452 SUPERFAMILY SSF53335 88 450 7.15E-81 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS20735 6e8fe0b1047c78a1ae5db9aac378d2c8 452 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 434 444 - T 22-04-2016 IPR030391 RNA methyltransferase TrmA, conserved site PP4_RS06025 cc278a090bd1ae7c0ec71aef99ab4796 236 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 4 234 30.641 T 22-04-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 PP4_RS06025 cc278a090bd1ae7c0ec71aef99ab4796 236 PANTHER PTHR11609 3 234 2.9E-118 T 22-04-2016 PP4_RS06025 cc278a090bd1ae7c0ec71aef99ab4796 236 ProSitePatterns PS01057 SAICAR synthetase signature 1. 86 100 - T 22-04-2016 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 PP4_RS06025 cc278a090bd1ae7c0ec71aef99ab4796 236 Gene3D G3DSA:3.30.470.20 92 219 3.6E-52 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PP4_RS06025 cc278a090bd1ae7c0ec71aef99ab4796 236 Gene3D G3DSA:3.30.200.20 1 91 1.2E-33 T 22-04-2016 PP4_RS06025 cc278a090bd1ae7c0ec71aef99ab4796 236 SUPERFAMILY SSF56104 3 232 8.17E-79 T 22-04-2016 PP4_RS06025 cc278a090bd1ae7c0ec71aef99ab4796 236 PANTHER PTHR11609:SF2 3 234 2.9E-118 T 22-04-2016 PP4_RS06025 cc278a090bd1ae7c0ec71aef99ab4796 236 ProSitePatterns PS01058 SAICAR synthetase signature 2. 173 181 - T 22-04-2016 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 PP4_RS06025 cc278a090bd1ae7c0ec71aef99ab4796 236 Pfam PF01259 SAICAR synthetase 6 231 1.7E-63 T 22-04-2016 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 PP4_RS06025 cc278a090bd1ae7c0ec71aef99ab4796 236 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 3 233 2.0E-78 T 22-04-2016 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074 PP4_RS13495 c4ac511bba06fa97754721652a169d01 273 PIRSF PIRSF005426 23 273 5.7E-85 T 22-04-2016 IPR016446 Flavin oxidoreductase Frp family GO:0016491|GO:0055114 PP4_RS13495 c4ac511bba06fa97754721652a169d01 273 Pfam PF00881 Nitroreductase family 33 187 8.3E-21 T 22-04-2016 IPR029479 Nitroreductase PP4_RS13495 c4ac511bba06fa97754721652a169d01 273 Gene3D G3DSA:3.40.109.10 25 271 2.2E-66 T 22-04-2016 IPR000415 Nitroreductase-like GO:0016491 PP4_RS13495 c4ac511bba06fa97754721652a169d01 273 PANTHER PTHR23026:SF98 2 215 5.6E-76 T 22-04-2016 PP4_RS13495 c4ac511bba06fa97754721652a169d01 273 PANTHER PTHR23026 2 215 5.6E-76 T 22-04-2016 PP4_RS13495 c4ac511bba06fa97754721652a169d01 273 SUPERFAMILY SSF55469 24 272 1.57E-64 T 22-04-2016 IPR000415 Nitroreductase-like GO:0016491 PP4_RS19375 a23ccc97114577433df663420b75753a 277 PANTHER PTHR10992:SF107 23 268 2.0E-28 T 22-04-2016 PP4_RS19375 a23ccc97114577433df663420b75753a 277 PANTHER PTHR10992 23 268 2.0E-28 T 22-04-2016 PP4_RS19375 a23ccc97114577433df663420b75753a 277 SUPERFAMILY SSF53474 37 256 1.12E-28 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS19375 a23ccc97114577433df663420b75753a 277 Gene3D G3DSA:3.40.50.1820 52 253 5.5E-29 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS19375 a23ccc97114577433df663420b75753a 277 Pfam PF12697 Alpha/beta hydrolase family 69 246 3.5E-10 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS10220 c8c9cf1c046ef0e693aa9e18f8bf1e39 312 SUPERFAMILY SSF56601 9 284 1.92E-60 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS10220 c8c9cf1c046ef0e693aa9e18f8bf1e39 312 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 42 268 5.0E-71 T 22-04-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 PP4_RS10220 c8c9cf1c046ef0e693aa9e18f8bf1e39 312 PANTHER PTHR21581 9 311 4.3E-147 T 22-04-2016 PP4_RS10220 c8c9cf1c046ef0e693aa9e18f8bf1e39 312 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 73 84 1.7E-12 T 22-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 PP4_RS10220 c8c9cf1c046ef0e693aa9e18f8bf1e39 312 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 123 140 1.7E-12 T 22-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 PP4_RS10220 c8c9cf1c046ef0e693aa9e18f8bf1e39 312 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 150 163 1.7E-12 T 22-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 PP4_RS10220 c8c9cf1c046ef0e693aa9e18f8bf1e39 312 Gene3D G3DSA:3.40.710.10 17 284 2.2E-63 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS10220 c8c9cf1c046ef0e693aa9e18f8bf1e39 312 PANTHER PTHR21581:SF8 9 311 4.3E-147 T 22-04-2016 PP4_RS10430 796edcbfd8d175317803a16d94b698fe 260 PANTHER PTHR11645 3 231 6.6E-18 T 22-04-2016 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 PP4_RS10430 796edcbfd8d175317803a16d94b698fe 260 Gene3D G3DSA:3.40.50.720 4 136 4.3E-25 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS10430 796edcbfd8d175317803a16d94b698fe 260 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 4 94 3.6E-11 T 22-04-2016 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal PP4_RS10430 796edcbfd8d175317803a16d94b698fe 260 Gene3D G3DSA:1.10.3730.10 157 245 6.6E-6 T 22-04-2016 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 PP4_RS10430 796edcbfd8d175317803a16d94b698fe 260 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 157 245 2.8E-7 T 22-04-2016 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|UniPathway: UPA00098 PP4_RS10430 796edcbfd8d175317803a16d94b698fe 260 SUPERFAMILY SSF48179 157 244 6.46E-5 T 22-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PP4_RS10430 796edcbfd8d175317803a16d94b698fe 260 SUPERFAMILY SSF51735 4 135 3.07E-19 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS01980 534b58bc3cc037f15fc8447f6777185d 324 Hamap MF_01497 Stress response kinase A [srkA]. 1 317 48.075 T 22-04-2016 IPR032882 SrkA/RdoA protein kinase GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 PP4_RS01980 534b58bc3cc037f15fc8447f6777185d 324 PANTHER PTHR39573:SF1 1 324 1.1E-167 T 22-04-2016 IPR032882 SrkA/RdoA protein kinase GO:0004674|GO:0006468 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 PP4_RS01980 534b58bc3cc037f15fc8447f6777185d 324 PANTHER PTHR39573 1 324 1.1E-167 T 22-04-2016 PP4_RS01980 534b58bc3cc037f15fc8447f6777185d 324 Pfam PF01636 Phosphotransferase enzyme family 32 263 6.7E-39 T 22-04-2016 IPR002575 Aminoglycoside phosphotransferase PP4_RS01980 534b58bc3cc037f15fc8447f6777185d 324 SUPERFAMILY SSF56112 1 322 2.45E-87 T 22-04-2016 IPR011009 Protein kinase-like domain PP4_RS01980 534b58bc3cc037f15fc8447f6777185d 324 Gene3D G3DSA:3.90.1200.10 104 323 2.3E-46 T 22-04-2016 PP4_RS06100 4357baf6f2ecbc97c9f7c8b382b52854 415 PANTHER PTHR13847 1 65 1.9E-37 T 22-04-2016 PP4_RS06100 4357baf6f2ecbc97c9f7c8b382b52854 415 PANTHER PTHR13847 123 415 1.9E-37 T 22-04-2016 PP4_RS06100 4357baf6f2ecbc97c9f7c8b382b52854 415 PANTHER PTHR13847:SF216 1 65 1.9E-37 T 22-04-2016 PP4_RS06100 4357baf6f2ecbc97c9f7c8b382b52854 415 PANTHER PTHR13847:SF216 123 415 1.9E-37 T 22-04-2016 PP4_RS06100 4357baf6f2ecbc97c9f7c8b382b52854 415 Gene3D G3DSA:3.50.50.60 113 128 5.0E-44 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS06100 4357baf6f2ecbc97c9f7c8b382b52854 415 Gene3D G3DSA:3.50.50.60 360 415 5.0E-44 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS06100 4357baf6f2ecbc97c9f7c8b382b52854 415 Gene3D G3DSA:3.50.50.60 4 63 5.0E-44 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS06100 4357baf6f2ecbc97c9f7c8b382b52854 415 Gene3D G3DSA:3.50.50.60 196 271 5.0E-44 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS06100 4357baf6f2ecbc97c9f7c8b382b52854 415 SUPERFAMILY SSF51905 7 60 9.58E-41 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS06100 4357baf6f2ecbc97c9f7c8b382b52854 415 SUPERFAMILY SSF51905 360 414 9.58E-41 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS06100 4357baf6f2ecbc97c9f7c8b382b52854 415 SUPERFAMILY SSF51905 120 272 9.58E-41 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS06100 4357baf6f2ecbc97c9f7c8b382b52854 415 SUPERFAMILY SSF54373 274 360 2.09E-8 T 22-04-2016 PP4_RS06100 4357baf6f2ecbc97c9f7c8b382b52854 415 Gene3D G3DSA:3.30.9.10 129 195 1.1E-6 T 22-04-2016 PP4_RS06100 4357baf6f2ecbc97c9f7c8b382b52854 415 Pfam PF01266 FAD dependent oxidoreductase 8 395 1.2E-53 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PP4_RS15745 0cb8813dc1dd0e4e90990b98201912d5 956 SUPERFAMILY SSF53383 926 949 2.02E-99 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS15745 0cb8813dc1dd0e4e90990b98201912d5 956 SUPERFAMILY SSF53383 476 884 2.02E-99 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS15745 0cb8813dc1dd0e4e90990b98201912d5 956 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 17 947 0.0 T 22-04-2016 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2 PP4_RS15745 0cb8813dc1dd0e4e90990b98201912d5 956 PANTHER PTHR11773:SF1 11 955 0.0 T 22-04-2016 PP4_RS15745 0cb8813dc1dd0e4e90990b98201912d5 956 PANTHER PTHR11773 11 955 0.0 T 22-04-2016 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 PP4_RS15745 0cb8813dc1dd0e4e90990b98201912d5 956 Pfam PF02347 Glycine cleavage system P-protein 470 736 4.0E-9 T 22-04-2016 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 PP4_RS15745 0cb8813dc1dd0e4e90990b98201912d5 956 Pfam PF02347 Glycine cleavage system P-protein 17 442 9.8E-175 T 22-04-2016 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 PP4_RS15745 0cb8813dc1dd0e4e90990b98201912d5 956 SUPERFAMILY SSF53383 17 426 8.72E-97 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS15745 0cb8813dc1dd0e4e90990b98201912d5 956 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 8 953 25.714 T 22-04-2016 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2 PP4_RS15745 0cb8813dc1dd0e4e90990b98201912d5 956 Gene3D G3DSA:3.40.640.10 86 308 1.0E-15 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS15745 0cb8813dc1dd0e4e90990b98201912d5 956 Gene3D G3DSA:3.40.640.10 504 740 1.3E-38 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS18580 66477ca9928906183ea8ca1bb5d76f56 450 SUPERFAMILY SSF158472 179 228 1.83E-6 T 22-04-2016 PP4_RS18580 66477ca9928906183ea8ca1bb5d76f56 450 Pfam PF00512 His Kinase A (phospho-acceptor) domain 233 298 1.2E-13 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS18580 66477ca9928906183ea8ca1bb5d76f56 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 375 389 8.8E-8 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS18580 66477ca9928906183ea8ca1bb5d76f56 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 411 429 8.8E-8 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS18580 66477ca9928906183ea8ca1bb5d76f56 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature 393 403 8.8E-8 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS18580 66477ca9928906183ea8ca1bb5d76f56 450 Gene3D G3DSA:3.30.565.10 306 446 7.2E-33 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS18580 66477ca9928906183ea8ca1bb5d76f56 450 SUPERFAMILY SSF47384 215 298 7.65E-17 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS18580 66477ca9928906183ea8ca1bb5d76f56 450 SUPERFAMILY SSF55874 287 446 4.32E-34 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS18580 66477ca9928906183ea8ca1bb5d76f56 450 PANTHER PTHR24423 172 450 4.8E-119 T 22-04-2016 PP4_RS18580 66477ca9928906183ea8ca1bb5d76f56 450 PANTHER PTHR24423 1 107 4.8E-119 T 22-04-2016 PP4_RS18580 66477ca9928906183ea8ca1bb5d76f56 450 TIGRFAM TIGR01386 cztS_silS_copS: heavy metal sensor kinase 4 446 5.0E-151 T 22-04-2016 IPR006290 Heavy metal sensor kinase GO:0000160|GO:0004673|GO:0016020 PP4_RS18580 66477ca9928906183ea8ca1bb5d76f56 450 SMART SM00387 341 450 4.4E-35 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS18580 66477ca9928906183ea8ca1bb5d76f56 450 SMART SM00388 232 298 7.7E-17 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS18580 66477ca9928906183ea8ca1bb5d76f56 450 SMART SM00304 178 231 3.8E-11 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS18580 66477ca9928906183ea8ca1bb5d76f56 450 Gene3D G3DSA:1.10.287.130 222 294 1.7E-10 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS18580 66477ca9928906183ea8ca1bb5d76f56 450 PANTHER PTHR24423:SF354 172 450 4.8E-119 T 22-04-2016 PP4_RS18580 66477ca9928906183ea8ca1bb5d76f56 450 PANTHER PTHR24423:SF354 1 107 4.8E-119 T 22-04-2016 PP4_RS18580 66477ca9928906183ea8ca1bb5d76f56 450 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 341 447 3.7E-17 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS18580 66477ca9928906183ea8ca1bb5d76f56 450 Pfam PF00672 HAMP domain 159 227 7.5E-12 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS15490 473b8ee67a9071a77338293bd67db52f 156 Gene3D G3DSA:3.40.50.270 1 134 1.8E-33 T 22-04-2016 PP4_RS15490 473b8ee67a9071a77338293bd67db52f 156 PANTHER PTHR11717:SF18 1 135 1.2E-27 T 22-04-2016 PP4_RS15490 473b8ee67a9071a77338293bd67db52f 156 PANTHER PTHR11717 1 135 1.2E-27 T 22-04-2016 PP4_RS15490 473b8ee67a9071a77338293bd67db52f 156 SMART SM00226 1 136 1.5E-39 T 22-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily PP4_RS15490 473b8ee67a9071a77338293bd67db52f 156 SUPERFAMILY SSF52788 1 136 1.57E-32 T 22-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily PP4_RS15490 473b8ee67a9071a77338293bd67db52f 156 Pfam PF01451 Low molecular weight phosphotyrosine protein phosphatase 3 134 3.1E-24 T 22-04-2016 IPR023485 Phosphotyrosine protein phosphatase I superfamily PP4_RS24605 05abca317a8b8fd7787d0675ebb92287 196 PANTHER PTHR23327 1 175 5.8E-41 T 22-04-2016 PP4_RS24605 05abca317a8b8fd7787d0675ebb92287 196 SUPERFAMILY SSF88697 1 188 1.39E-44 T 22-04-2016 IPR015947 PUA-like domain PP4_RS24605 05abca317a8b8fd7787d0675ebb92287 196 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 2 189 1.8E-23 T 22-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 PP4_RS24605 05abca317a8b8fd7787d0675ebb92287 196 PANTHER PTHR23327:SF0 1 175 5.8E-41 T 22-04-2016 PP4_RS24605 05abca317a8b8fd7787d0675ebb92287 196 SMART SM00464 2 189 4.5E-13 T 22-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 PP4_RS23485 6c1e78913cbc83a383e01fa3586f3bd3 338 PANTHER PTHR21371 1 337 5.9E-191 T 22-04-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PP4_RS23485 6c1e78913cbc83a383e01fa3586f3bd3 338 Gene3D G3DSA:1.10.1040.10 39 325 1.1E-112 T 22-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PP4_RS23485 6c1e78913cbc83a383e01fa3586f3bd3 338 Pfam PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain 14 177 6.7E-74 T 22-04-2016 IPR013116 Acetohydroxy acid isomeroreductase, NADPH-binding domain KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PP4_RS23485 6c1e78913cbc83a383e01fa3586f3bd3 338 Hamap MF_00435 Ketol-acid reductoisomerase [ilvC]. 1 328 44.552 T 22-04-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PP4_RS23485 6c1e78913cbc83a383e01fa3586f3bd3 338 Gene3D G3DSA:3.50.50.60 3 38 6.1E-6 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS23485 6c1e78913cbc83a383e01fa3586f3bd3 338 TIGRFAM TIGR00465 ilvC: ketol-acid reductoisomerase 14 326 1.2E-129 T 22-04-2016 IPR013023 Ketol-acid reductoisomerase GO:0009082|GO:0016491|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PP4_RS23485 6c1e78913cbc83a383e01fa3586f3bd3 338 SUPERFAMILY SSF48179 183 332 1.04E-67 T 22-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PP4_RS23485 6c1e78913cbc83a383e01fa3586f3bd3 338 Pfam PF01450 Acetohydroxy acid isomeroreductase, catalytic domain 183 326 2.1E-61 T 22-04-2016 IPR000506 Acetohydroxy acid isomeroreductase C-terminal GO:0004455|GO:0009082|GO:0055114 KEGG: 00290+1.1.1.86|KEGG: 00770+1.1.1.86|MetaCyc: PWY-5103|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PP4_RS23485 6c1e78913cbc83a383e01fa3586f3bd3 338 SUPERFAMILY SSF51735 1 182 2.43E-74 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS15585 486e32dfeba1437e1e656e1b6c5fd4cc 333 Gene3D G3DSA:3.40.50.1000 60 75 2.5E-14 T 22-04-2016 IPR023214 HAD-like domain PP4_RS15585 486e32dfeba1437e1e656e1b6c5fd4cc 333 Gene3D G3DSA:3.40.50.1000 158 298 2.5E-14 T 22-04-2016 IPR023214 HAD-like domain PP4_RS15585 486e32dfeba1437e1e656e1b6c5fd4cc 333 SUPERFAMILY SSF56784 60 308 1.52E-22 T 22-04-2016 IPR023214 HAD-like domain PP4_RS15585 486e32dfeba1437e1e656e1b6c5fd4cc 333 Pfam PF12710 haloacid dehalogenase-like hydrolase 62 266 1.5E-25 T 22-04-2016 PP4_RS01970 0d8562f2d81f553a5d78667adc832b6e 172 PANTHER PTHR34875:SF1 2 172 8.3E-86 T 22-04-2016 PP4_RS01970 0d8562f2d81f553a5d78667adc832b6e 172 Gene3D G3DSA:3.30.70.260 2 68 2.9E-18 T 22-04-2016 PP4_RS01970 0d8562f2d81f553a5d78667adc832b6e 172 Pfam PF13740 ACT domain 3 67 1.1E-13 T 22-04-2016 PP4_RS01970 0d8562f2d81f553a5d78667adc832b6e 172 PANTHER PTHR34875 2 172 8.3E-86 T 22-04-2016 PP4_RS01970 0d8562f2d81f553a5d78667adc832b6e 172 Gene3D G3DSA:3.30.70.260 86 170 1.4E-21 T 22-04-2016 PP4_RS01970 0d8562f2d81f553a5d78667adc832b6e 172 SUPERFAMILY SSF55021 2 68 1.0E-12 T 22-04-2016 PP4_RS01970 0d8562f2d81f553a5d78667adc832b6e 172 PIRSF PIRSF028103 1 172 2.8E-59 T 22-04-2016 IPR016867 Glycine cleavage system transcriptional repressor GO:0006355 PP4_RS01970 0d8562f2d81f553a5d78667adc832b6e 172 SUPERFAMILY SSF55021 87 166 2.0E-14 T 22-04-2016 PP4_RS24265 ac2dd44497ce8891416f67a14ccbe9b1 375 SUPERFAMILY SSF56317 38 339 1.31E-71 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PP4_RS24265 ac2dd44497ce8891416f67a14ccbe9b1 375 Gene3D G3DSA:3.60.110.10 32 339 9.3E-56 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PP4_RS24265 ac2dd44497ce8891416f67a14ccbe9b1 375 ProSitePatterns PS00920 Nitrilases / cyanide hydratase signature 1. 71 86 - T 22-04-2016 IPR000132 Nitrilase/cyanide hydratase, conserved site GO:0016810 PP4_RS24265 ac2dd44497ce8891416f67a14ccbe9b1 375 ProSitePatterns PS00921 Nitrilases / cyanide hydratase active site signature. 191 204 - T 22-04-2016 IPR000132 Nitrilase/cyanide hydratase, conserved site GO:0016810 PP4_RS24265 ac2dd44497ce8891416f67a14ccbe9b1 375 PANTHER PTHR23088:SF2 23 340 9.4E-97 T 22-04-2016 PP4_RS24265 ac2dd44497ce8891416f67a14ccbe9b1 375 Pfam PF00795 Carbon-nitrogen hydrolase 40 317 1.0E-52 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PP4_RS24265 ac2dd44497ce8891416f67a14ccbe9b1 375 PANTHER PTHR23088 23 340 9.4E-97 T 22-04-2016 PP4_RS24635 396481a48886f4f8b067615bd4da327f 337 ProSitePatterns PS01136 Uncharacterized protein family UPF0034 signature. 97 115 - T 22-04-2016 IPR018517 tRNA-dihydrouridine synthase, conserved site GO:0008033|GO:0017150|GO:0050660|GO:0055114 PP4_RS24635 396481a48886f4f8b067615bd4da327f 337 PANTHER PTHR11082:SF25 5 333 5.2E-142 T 22-04-2016 PP4_RS24635 396481a48886f4f8b067615bd4da327f 337 Gene3D G3DSA:1.10.1200.80 255 324 1.2E-20 T 22-04-2016 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal GO:0016491|GO:0055114 PP4_RS24635 396481a48886f4f8b067615bd4da327f 337 PIRSF PIRSF006621 3 329 3.3E-107 T 22-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 PP4_RS24635 396481a48886f4f8b067615bd4da327f 337 Pfam PF01207 Dihydrouridine synthase (Dus) 16 320 5.9E-108 T 22-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 PP4_RS24635 396481a48886f4f8b067615bd4da327f 337 Gene3D G3DSA:3.20.20.70 10 247 5.8E-84 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS24635 396481a48886f4f8b067615bd4da327f 337 TIGRFAM TIGR00737 nifR3_yhdG: putative TIM-barrel protein, nifR3 family 6 321 5.4E-129 T 22-04-2016 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 GO:0008033|GO:0016491|GO:0050660|GO:0055114 PP4_RS24635 396481a48886f4f8b067615bd4da327f 337 SUPERFAMILY SSF51395 13 322 2.2E-89 T 22-04-2016 PP4_RS24635 396481a48886f4f8b067615bd4da327f 337 PANTHER PTHR11082 5 333 5.2E-142 T 22-04-2016 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 PP4_RS24635 396481a48886f4f8b067615bd4da327f 337 Hamap MF_02042 tRNA-dihydrouridine synthase B [dusB]. 4 324 50.444 T 22-04-2016 IPR032887 tRNA-dihydrouridine synthase B GO:0002943|GO:0017150 PP4_RS01770 f7a2822689be073b68f4fe64e09efafc 346 Gene3D G3DSA:3.40.640.10 7 253 2.3E-66 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS01770 f7a2822689be073b68f4fe64e09efafc 346 Pfam PF01212 Beta-eliminating lyase 7 296 8.9E-76 T 22-04-2016 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 PP4_RS01770 f7a2822689be073b68f4fe64e09efafc 346 PANTHER PTHR10289:SF8 1 344 3.1E-166 T 22-04-2016 PP4_RS01770 f7a2822689be073b68f4fe64e09efafc 346 SUPERFAMILY SSF53383 7 343 2.75E-101 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS01770 f7a2822689be073b68f4fe64e09efafc 346 PIRSF PIRSF038940 5 346 1.2E-139 T 22-04-2016 IPR026273 Low specificity L-threonine aldolase GO:0004793|GO:0006567 KEGG: 00260+4.1.2.48 PP4_RS01770 f7a2822689be073b68f4fe64e09efafc 346 PANTHER PTHR10289 1 344 3.1E-166 T 22-04-2016 PP4_RS01770 f7a2822689be073b68f4fe64e09efafc 346 Gene3D G3DSA:3.90.1150.10 257 343 4.7E-17 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS17235 e86ad40e234d972caa717a831e3f968f 281 SMART SM00342 189 271 7.6E-31 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS17235 e86ad40e234d972caa717a831e3f968f 281 Gene3D G3DSA:1.10.10.60 168 226 1.1E-20 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS17235 e86ad40e234d972caa717a831e3f968f 281 PANTHER PTHR11019 7 279 2.2E-87 T 22-04-2016 PP4_RS17235 e86ad40e234d972caa717a831e3f968f 281 PANTHER PTHR11019:SF105 7 279 2.2E-87 T 22-04-2016 PP4_RS17235 e86ad40e234d972caa717a831e3f968f 281 SUPERFAMILY SSF46689 225 274 5.38E-12 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS17235 e86ad40e234d972caa717a831e3f968f 281 Pfam PF02311 AraC-like ligand binding domain 18 150 4.8E-24 T 22-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PP4_RS17235 e86ad40e234d972caa717a831e3f968f 281 Pfam PF12833 Helix-turn-helix domain 195 272 1.1E-25 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS17235 e86ad40e234d972caa717a831e3f968f 281 Gene3D G3DSA:2.60.120.280 29 145 5.5E-15 T 22-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PP4_RS17235 e86ad40e234d972caa717a831e3f968f 281 SUPERFAMILY SSF51215 30 150 1.31E-20 T 22-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PP4_RS17235 e86ad40e234d972caa717a831e3f968f 281 SUPERFAMILY SSF46689 175 223 4.93E-11 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS17235 e86ad40e234d972caa717a831e3f968f 281 Gene3D G3DSA:1.10.10.60 227 273 1.0E-16 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS17235 e86ad40e234d972caa717a831e3f968f 281 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 240 255 7.5E-5 T 22-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PP4_RS17235 e86ad40e234d972caa717a831e3f968f 281 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 255 271 7.5E-5 T 22-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PP4_RS02025 6557c8b88b91fc8ba47796b143cad241 601 SUPERFAMILY SSF47203 287 475 5.48E-49 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS02025 6557c8b88b91fc8ba47796b143cad241 601 PANTHER PTHR10909 1 478 4.6E-263 T 22-04-2016 PP4_RS02025 6557c8b88b91fc8ba47796b143cad241 601 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 468 593 1.5E-34 T 22-04-2016 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain PP4_RS02025 6557c8b88b91fc8ba47796b143cad241 601 Gene3D G3DSA:2.40.110.10 161 267 5.0E-28 T 22-04-2016 PP4_RS02025 6557c8b88b91fc8ba47796b143cad241 601 SUPERFAMILY SSF56645 38 279 3.8E-59 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 PP4_RS02025 6557c8b88b91fc8ba47796b143cad241 601 Gene3D G3DSA:1.10.540.10 36 159 1.2E-17 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS02025 6557c8b88b91fc8ba47796b143cad241 601 Gene3D G3DSA:1.20.140.10 268 465 1.6E-47 T 22-04-2016 PP4_RS02025 6557c8b88b91fc8ba47796b143cad241 601 PANTHER PTHR10909:SF154 1 478 4.6E-263 T 22-04-2016 PP4_RS02025 6557c8b88b91fc8ba47796b143cad241 601 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 3 35 7.5E-12 T 22-04-2016 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria PP4_RS02025 6557c8b88b91fc8ba47796b143cad241 601 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 282 451 5.2E-21 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS02025 6557c8b88b91fc8ba47796b143cad241 601 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 163 271 7.3E-19 T 22-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 PP4_RS02025 6557c8b88b91fc8ba47796b143cad241 601 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 40 158 4.8E-11 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS12030 67c5307edbb5216b45a0d9a96cd833e8 494 SUPERFAMILY SSF46626 7 142 5.16E-11 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS12030 67c5307edbb5216b45a0d9a96cd833e8 494 Pfam PF13458 Periplasmic binding protein 151 474 2.7E-36 T 22-04-2016 IPR028081 Leucine-binding protein domain PP4_RS12030 67c5307edbb5216b45a0d9a96cd833e8 494 SUPERFAMILY SSF53822 151 486 2.79E-36 T 22-04-2016 IPR028082 Periplasmic binding protein-like I PP4_RS12030 67c5307edbb5216b45a0d9a96cd833e8 494 Gene3D G3DSA:1.10.760.10 15 140 1.1E-9 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS12030 67c5307edbb5216b45a0d9a96cd833e8 494 Pfam PF00034 Cytochrome c 49 137 3.3E-6 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS12030 67c5307edbb5216b45a0d9a96cd833e8 494 Gene3D G3DSA:3.40.50.2300 148 268 5.8E-22 T 22-04-2016 PP4_RS12030 67c5307edbb5216b45a0d9a96cd833e8 494 Gene3D G3DSA:3.40.50.2300 394 464 5.8E-22 T 22-04-2016 PP4_RS12030 67c5307edbb5216b45a0d9a96cd833e8 494 PANTHER PTHR30483 89 245 3.6E-21 T 22-04-2016 PP4_RS12030 67c5307edbb5216b45a0d9a96cd833e8 494 PANTHER PTHR30483:SF11 89 245 3.6E-21 T 22-04-2016 PP4_RS16080 acb76b60aad05bc429a4cbeead926b27 904 PANTHER PTHR24093 4 903 0.0 T 22-04-2016 PP4_RS16080 acb76b60aad05bc429a4cbeead926b27 904 PANTHER PTHR24093:SF128 4 903 0.0 T 22-04-2016 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 PP4_RS16080 acb76b60aad05bc429a4cbeead926b27 904 SUPERFAMILY SSF56784 498 742 7.83E-36 T 22-04-2016 IPR023214 HAD-like domain PP4_RS16080 acb76b60aad05bc429a4cbeead926b27 904 SUPERFAMILY SSF56784 372 392 7.83E-36 T 22-04-2016 IPR023214 HAD-like domain PP4_RS16080 acb76b60aad05bc429a4cbeead926b27 904 Gene3D G3DSA:3.40.1110.10 366 551 7.3E-33 T 22-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 PP4_RS16080 acb76b60aad05bc429a4cbeead926b27 904 Gene3D G3DSA:1.20.1110.10 613 895 5.8E-67 T 22-04-2016 IPR023298 P-type ATPase, transmembrane domain PP4_RS16080 acb76b60aad05bc429a4cbeead926b27 904 Gene3D G3DSA:1.20.1110.10 78 143 5.8E-67 T 22-04-2016 IPR023298 P-type ATPase, transmembrane domain PP4_RS16080 acb76b60aad05bc429a4cbeead926b27 904 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 376 382 - T 22-04-2016 IPR018303 P-type ATPase, phosphorylation site PP4_RS16080 acb76b60aad05bc429a4cbeead926b27 904 TIGRFAM TIGR01524 ATPase-IIIB_Mg: magnesium-translocating P-type ATPase 16 903 0.0 T 22-04-2016 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 PP4_RS16080 acb76b60aad05bc429a4cbeead926b27 904 Gene3D G3DSA:2.70.150.10 144 275 1.1E-33 T 22-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 PP4_RS16080 acb76b60aad05bc429a4cbeead926b27 904 Gene3D G3DSA:2.70.150.10 42 77 1.1E-33 T 22-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 PP4_RS16080 acb76b60aad05bc429a4cbeead926b27 904 PRINTS PR01836 Magnesium-transporting ATPase signature 807 828 5.3E-82 T 22-04-2016 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 PP4_RS16080 acb76b60aad05bc429a4cbeead926b27 904 PRINTS PR01836 Magnesium-transporting ATPase signature 752 765 5.3E-82 T 22-04-2016 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 PP4_RS16080 acb76b60aad05bc429a4cbeead926b27 904 PRINTS PR01836 Magnesium-transporting ATPase signature 408 421 5.3E-82 T 22-04-2016 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 PP4_RS16080 acb76b60aad05bc429a4cbeead926b27 904 PRINTS PR01836 Magnesium-transporting ATPase signature 720 731 5.3E-82 T 22-04-2016 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 PP4_RS16080 acb76b60aad05bc429a4cbeead926b27 904 PRINTS PR01836 Magnesium-transporting ATPase signature 304 323 5.3E-82 T 22-04-2016 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 PP4_RS16080 acb76b60aad05bc429a4cbeead926b27 904 PRINTS PR01836 Magnesium-transporting ATPase signature 702 717 5.3E-82 T 22-04-2016 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 PP4_RS16080 acb76b60aad05bc429a4cbeead926b27 904 PRINTS PR01836 Magnesium-transporting ATPase signature 772 788 5.3E-82 T 22-04-2016 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 PP4_RS16080 acb76b60aad05bc429a4cbeead926b27 904 PRINTS PR01836 Magnesium-transporting ATPase signature 857 878 5.3E-82 T 22-04-2016 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 PP4_RS16080 acb76b60aad05bc429a4cbeead926b27 904 PRINTS PR01836 Magnesium-transporting ATPase signature 287 303 5.3E-82 T 22-04-2016 IPR006415 P-type ATPase, subfamily IIIB GO:0015444|GO:0015693|GO:0016021 PP4_RS16080 acb76b60aad05bc429a4cbeead926b27 904 SUPERFAMILY SSF81653 163 274 6.67E-25 T 22-04-2016 PP4_RS16080 acb76b60aad05bc429a4cbeead926b27 904 Pfam PF00689 Cation transporting ATPase, C-terminus 727 894 6.2E-16 T 22-04-2016 IPR006068 Cation-transporting P-type ATPase, C-terminal PP4_RS16080 acb76b60aad05bc429a4cbeead926b27 904 SMART SM00831 25 98 2.9E-17 T 22-04-2016 IPR004014 Cation-transporting P-type ATPase, N-terminal PP4_RS16080 acb76b60aad05bc429a4cbeead926b27 904 Pfam PF00702 haloacid dehalogenase-like hydrolase 370 658 5.7E-18 T 22-04-2016 PP4_RS16080 acb76b60aad05bc429a4cbeead926b27 904 Pfam PF00690 Cation transporter/ATPase, N-terminus 31 93 3.5E-13 T 22-04-2016 IPR004014 Cation-transporting P-type ATPase, N-terminal PP4_RS16080 acb76b60aad05bc429a4cbeead926b27 904 SUPERFAMILY SSF81665 275 368 6.8E-101 T 22-04-2016 PP4_RS16080 acb76b60aad05bc429a4cbeead926b27 904 SUPERFAMILY SSF81665 37 149 6.8E-101 T 22-04-2016 PP4_RS16080 acb76b60aad05bc429a4cbeead926b27 904 SUPERFAMILY SSF81665 693 901 6.8E-101 T 22-04-2016 PP4_RS16080 acb76b60aad05bc429a4cbeead926b27 904 Pfam PF00122 E1-E2 ATPase 116 365 4.8E-59 T 22-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 PP4_RS16080 acb76b60aad05bc429a4cbeead926b27 904 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 267 412 2.2E-23 T 22-04-2016 IPR001757 P-type ATPase GO:0016021 PP4_RS16080 acb76b60aad05bc429a4cbeead926b27 904 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 617 733 1.1E-27 T 22-04-2016 IPR001757 P-type ATPase GO:0016021 PP4_RS20295 e3103792dd85ed45273cebaa4ff0229d 208 SMART SM00421 145 202 3.8E-18 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS20295 e3103792dd85ed45273cebaa4ff0229d 208 PANTHER PTHR26402:SF151 2 205 3.4E-64 T 22-04-2016 PP4_RS20295 e3103792dd85ed45273cebaa4ff0229d 208 SUPERFAMILY SSF46894 140 207 6.12E-17 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS20295 e3103792dd85ed45273cebaa4ff0229d 208 SMART SM00448 2 114 1.9E-29 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS20295 e3103792dd85ed45273cebaa4ff0229d 208 ProSitePatterns PS00622 LuxR-type HTH domain signature. 162 189 - T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS20295 e3103792dd85ed45273cebaa4ff0229d 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 162 178 2.59E-10 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS20295 e3103792dd85ed45273cebaa4ff0229d 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 178 190 2.59E-10 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS20295 e3103792dd85ed45273cebaa4ff0229d 208 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 148 162 2.59E-10 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS20295 e3103792dd85ed45273cebaa4ff0229d 208 PANTHER PTHR26402 2 205 3.4E-64 T 22-04-2016 PP4_RS20295 e3103792dd85ed45273cebaa4ff0229d 208 Gene3D G3DSA:1.10.10.10 120 208 6.8E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS20295 e3103792dd85ed45273cebaa4ff0229d 208 Gene3D G3DSA:3.40.50.2300 1 119 1.8E-34 T 22-04-2016 PP4_RS20295 e3103792dd85ed45273cebaa4ff0229d 208 SUPERFAMILY SSF52172 1 130 9.11E-34 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS20295 e3103792dd85ed45273cebaa4ff0229d 208 Pfam PF00196 Bacterial regulatory proteins, luxR family 147 202 1.3E-18 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS20295 e3103792dd85ed45273cebaa4ff0229d 208 Pfam PF00072 Response regulator receiver domain 4 114 7.3E-27 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS27200 93ed802f3b31bf9c980e34e03512f5be 330 SUPERFAMILY SSF46689 282 329 8.06E-11 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS27200 93ed802f3b31bf9c980e34e03512f5be 330 Pfam PF12833 Helix-turn-helix domain 253 329 2.4E-19 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS27200 93ed802f3b31bf9c980e34e03512f5be 330 PANTHER PTHR11019:SF52 228 329 5.6E-37 T 22-04-2016 PP4_RS27200 93ed802f3b31bf9c980e34e03512f5be 330 PANTHER PTHR11019 228 329 5.6E-37 T 22-04-2016 PP4_RS27200 93ed802f3b31bf9c980e34e03512f5be 330 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 23 204 6.0E-47 T 22-04-2016 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal PP4_RS27200 93ed802f3b31bf9c980e34e03512f5be 330 Gene3D G3DSA:1.10.10.60 281 329 1.8E-13 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS27200 93ed802f3b31bf9c980e34e03512f5be 330 SMART SM00342 247 329 9.9E-23 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS16870 9d2d3979cf47f4c05d65aa41a73cb1de 471 Pfam PF00324 Amino acid permease 26 458 3.1E-105 T 22-04-2016 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 PP4_RS16870 9d2d3979cf47f4c05d65aa41a73cb1de 471 PIRSF PIRSF006060 1 469 7.7E-74 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS16870 9d2d3979cf47f4c05d65aa41a73cb1de 471 ProSitePatterns PS00218 Amino acid permeases signature. 51 81 - T 22-04-2016 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 PP4_RS16870 9d2d3979cf47f4c05d65aa41a73cb1de 471 PANTHER PTHR11785:SF24 15 464 3.0E-191 T 22-04-2016 PP4_RS16870 9d2d3979cf47f4c05d65aa41a73cb1de 471 PANTHER PTHR11785 15 464 3.0E-191 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS25795 5f877506a5de6abd4f00e5414b1b76e7 84 PRINTS PR00160 Glutaredoxin signature 4 22 1.9E-15 T 22-04-2016 IPR014025 Glutaredoxin subgroup PP4_RS25795 5f877506a5de6abd4f00e5414b1b76e7 84 PRINTS PR00160 Glutaredoxin signature 46 59 1.9E-15 T 22-04-2016 IPR014025 Glutaredoxin subgroup PP4_RS25795 5f877506a5de6abd4f00e5414b1b76e7 84 PRINTS PR00160 Glutaredoxin signature 60 73 1.9E-15 T 22-04-2016 IPR014025 Glutaredoxin subgroup PP4_RS25795 5f877506a5de6abd4f00e5414b1b76e7 84 PANTHER PTHR10168 2 82 3.2E-25 T 22-04-2016 PP4_RS25795 5f877506a5de6abd4f00e5414b1b76e7 84 SUPERFAMILY SSF52833 1 83 2.76E-28 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS25795 5f877506a5de6abd4f00e5414b1b76e7 84 ProSitePatterns PS00195 Glutaredoxin active site. 6 22 - T 22-04-2016 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 PP4_RS25795 5f877506a5de6abd4f00e5414b1b76e7 84 TIGRFAM TIGR02181 GRX_bact: glutaredoxin 3 4 82 8.4E-37 T 22-04-2016 IPR011900 Glutaredoxin, GrxC GO:0045454 PP4_RS25795 5f877506a5de6abd4f00e5414b1b76e7 84 Gene3D G3DSA:3.40.30.10 1 79 8.8E-29 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS25795 5f877506a5de6abd4f00e5414b1b76e7 84 Pfam PF00462 Glutaredoxin 4 63 1.1E-20 T 22-04-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 PP4_RS15890 633d90d136ee65b65e851b2dc78340c7 506 PANTHER PTHR11699:SF97 1 506 0.0 T 22-04-2016 PP4_RS15890 633d90d136ee65b65e851b2dc78340c7 506 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 294 305 - T 22-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 PP4_RS15890 633d90d136ee65b65e851b2dc78340c7 506 Gene3D G3DSA:3.40.605.10 18 269 3.0E-93 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS15890 633d90d136ee65b65e851b2dc78340c7 506 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 261 268 - T 22-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 PP4_RS15890 633d90d136ee65b65e851b2dc78340c7 506 Pfam PF00171 Aldehyde dehydrogenase family 35 493 5.9E-163 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PP4_RS15890 633d90d136ee65b65e851b2dc78340c7 506 SUPERFAMILY SSF53720 12 497 1.57E-161 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS15890 633d90d136ee65b65e851b2dc78340c7 506 Gene3D G3DSA:3.40.309.10 270 469 2.5E-61 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PP4_RS15890 633d90d136ee65b65e851b2dc78340c7 506 PANTHER PTHR11699 1 506 0.0 T 22-04-2016 PP4_RS23045 256b1e451a18f4194e97ca2acecba708 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 5.0E-19 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS23045 256b1e451a18f4194e97ca2acecba708 305 PANTHER PTHR30537:SF16 1 298 1.7E-99 T 22-04-2016 PP4_RS23045 256b1e451a18f4194e97ca2acecba708 305 Pfam PF03466 LysR substrate binding domain 90 281 9.2E-27 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS23045 256b1e451a18f4194e97ca2acecba708 305 SUPERFAMILY SSF46785 2 86 5.52E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS23045 256b1e451a18f4194e97ca2acecba708 305 PANTHER PTHR30537 1 298 1.7E-99 T 22-04-2016 PP4_RS23045 256b1e451a18f4194e97ca2acecba708 305 Gene3D G3DSA:3.40.190.10 93 172 8.4E-24 T 22-04-2016 PP4_RS23045 256b1e451a18f4194e97ca2acecba708 305 Gene3D G3DSA:1.10.10.10 6 88 3.0E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS23045 256b1e451a18f4194e97ca2acecba708 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 6.6E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS23045 256b1e451a18f4194e97ca2acecba708 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 6.6E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS23045 256b1e451a18f4194e97ca2acecba708 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 6.6E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS23045 256b1e451a18f4194e97ca2acecba708 305 Gene3D G3DSA:3.40.190.10 173 251 7.2E-25 T 22-04-2016 PP4_RS23045 256b1e451a18f4194e97ca2acecba708 305 SUPERFAMILY SSF53850 92 286 4.16E-31 T 22-04-2016 PP4_RS12870 6f9a233aaf579c008073c6ffe3ee65f0 399 Pfam PF03594 Benzoate membrane transport protein 7 383 3.1E-158 T 22-04-2016 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 PP4_RS12870 6f9a233aaf579c008073c6ffe3ee65f0 399 PANTHER PTHR30199:SF0 4 394 4.0E-127 T 22-04-2016 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 PP4_RS12870 6f9a233aaf579c008073c6ffe3ee65f0 399 PANTHER PTHR30199 4 394 4.0E-127 T 22-04-2016 PP4_RS12870 6f9a233aaf579c008073c6ffe3ee65f0 399 TIGRFAM TIGR00843 benE: benzoate transporter 10 383 2.1E-121 T 22-04-2016 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 PP4_RS07300 3ea34a8d90c28d1f9eb3ce0bc7753184 262 SUPERFAMILY SSF75708 37 261 5.62E-60 T 22-04-2016 PP4_RS07300 3ea34a8d90c28d1f9eb3ce0bc7753184 262 Pfam PF04344 Chemotaxis phosphatase, CheZ 49 262 1.1E-72 T 22-04-2016 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 KEGG: 00051+3.1.3.-|KEGG: 00332+3.1.3.-|KEGG: 00565+3.1.3.-|KEGG: 00600+3.1.3.-|KEGG: 00730+3.1.3.-|KEGG: 00740+3.1.3.-|KEGG: 00760+3.1.3.- PP4_RS07300 3ea34a8d90c28d1f9eb3ce0bc7753184 262 PANTHER PTHR22617:SF35 74 262 4.1E-61 T 22-04-2016 PP4_RS07300 3ea34a8d90c28d1f9eb3ce0bc7753184 262 PIRSF PIRSF002884 25 262 4.8E-94 T 22-04-2016 IPR007439 Chemotaxis phosphatase, CheZ GO:0003824|GO:0009288|GO:0050920 KEGG: 00051+3.1.3.-|KEGG: 00332+3.1.3.-|KEGG: 00565+3.1.3.-|KEGG: 00600+3.1.3.-|KEGG: 00730+3.1.3.-|KEGG: 00740+3.1.3.-|KEGG: 00760+3.1.3.- PP4_RS07300 3ea34a8d90c28d1f9eb3ce0bc7753184 262 Gene3D G3DSA:1.10.287.500 76 201 1.0E-45 T 22-04-2016 PP4_RS07300 3ea34a8d90c28d1f9eb3ce0bc7753184 262 PANTHER PTHR22617 74 262 4.1E-61 T 22-04-2016 PP4_RS01525 11f8c7cbb535c2427e37ad431f750341 439 Pfam PF00589 Phage integrase family 233 391 8.9E-15 T 22-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 PP4_RS01525 11f8c7cbb535c2427e37ad431f750341 439 Gene3D G3DSA:1.10.150.130 104 201 9.9E-13 T 22-04-2016 IPR023109 Integrase/recombinase, N-terminal PP4_RS01525 11f8c7cbb535c2427e37ad431f750341 439 PANTHER PTHR30629:SF4 2 434 1.7E-123 T 22-04-2016 PP4_RS01525 11f8c7cbb535c2427e37ad431f750341 439 Pfam PF13356 Domain of unknown function (DUF4102) 8 93 4.9E-17 T 22-04-2016 IPR025166 Domain of unknown function DUF4102 PP4_RS01525 11f8c7cbb535c2427e37ad431f750341 439 PANTHER PTHR30629 2 434 1.7E-123 T 22-04-2016 PP4_RS01525 11f8c7cbb535c2427e37ad431f750341 439 SUPERFAMILY SSF56349 104 398 1.82E-48 T 22-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 PP4_RS01525 11f8c7cbb535c2427e37ad431f750341 439 Gene3D G3DSA:1.10.443.10 221 392 3.2E-17 T 22-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 PP4_RS08370 8bac5e4941ef606778a9400e9e58f52d 569 Pfam PF00082 Subtilase family 279 517 1.7E-18 T 22-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 PP4_RS08370 8bac5e4941ef606778a9400e9e58f52d 569 Gene3D G3DSA:3.40.50.200 245 559 6.6E-30 T 22-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 PP4_RS08370 8bac5e4941ef606778a9400e9e58f52d 569 PIRSF PIRSF029389 1 569 0.0 T 22-04-2016 IPR016916 Uncharacterised conserved protein UCP029389, subtilisin-related PP4_RS08370 8bac5e4941ef606778a9400e9e58f52d 569 SUPERFAMILY SSF52743 247 516 1.17E-33 T 22-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 PP4_RS08370 8bac5e4941ef606778a9400e9e58f52d 569 ProSitePatterns PS00137 Serine proteases, subtilase family, histidine active site. 289 299 - T 22-04-2016 IPR022398 Peptidase S8, subtilisin, His-active site PP4_RS07260 fa43096d79f91b85c0ab22d70482a0e9 89 PANTHER PTHR34040:SF2 1 89 3.1E-38 T 22-04-2016 PP4_RS07260 fa43096d79f91b85c0ab22d70482a0e9 89 PIRSF PIRSF004669 1 89 1.5E-29 T 22-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 PP4_RS07260 fa43096d79f91b85c0ab22d70482a0e9 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 18 39 3.72E-16 T 22-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 PP4_RS07260 fa43096d79f91b85c0ab22d70482a0e9 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 39 54 3.72E-16 T 22-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 PP4_RS07260 fa43096d79f91b85c0ab22d70482a0e9 89 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 54 76 3.72E-16 T 22-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 PP4_RS07260 fa43096d79f91b85c0ab22d70482a0e9 89 Pfam PF01313 Bacterial export proteins, family 3 6 77 6.0E-28 T 22-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 PP4_RS07260 fa43096d79f91b85c0ab22d70482a0e9 89 PANTHER PTHR34040 1 89 3.1E-38 T 22-04-2016 PP4_RS07260 fa43096d79f91b85c0ab22d70482a0e9 89 TIGRFAM TIGR01402 fliQ: flagellar biosynthetic protein FliQ 1 88 1.6E-28 T 22-04-2016 IPR006305 Flagellar biosynthesis protein FliQ GO:0016021|GO:0044780 PP4_RS25165 161578eea97d2765005a9b0eb9b26647 296 SUPERFAMILY SSF46785 6 84 1.17E-16 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS25165 161578eea97d2765005a9b0eb9b26647 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 2.9E-16 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS25165 161578eea97d2765005a9b0eb9b26647 296 PANTHER PTHR30419 1 295 2.6E-127 T 22-04-2016 PP4_RS25165 161578eea97d2765005a9b0eb9b26647 296 Gene3D G3DSA:3.40.190.10 182 256 2.6E-8 T 22-04-2016 PP4_RS25165 161578eea97d2765005a9b0eb9b26647 296 Gene3D G3DSA:1.10.10.10 5 83 5.4E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS25165 161578eea97d2765005a9b0eb9b26647 296 SUPERFAMILY SSF53850 96 293 5.61E-30 T 22-04-2016 PP4_RS25165 161578eea97d2765005a9b0eb9b26647 296 Pfam PF03466 LysR substrate binding domain 95 288 1.1E-27 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS25165 161578eea97d2765005a9b0eb9b26647 296 PANTHER PTHR30419:SF11 1 295 2.6E-127 T 22-04-2016 PP4_RS25165 161578eea97d2765005a9b0eb9b26647 296 Gene3D G3DSA:3.40.190.10 98 181 3.7E-10 T 22-04-2016 PP4_RS25165 161578eea97d2765005a9b0eb9b26647 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 9.8E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS25165 161578eea97d2765005a9b0eb9b26647 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 9.8E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS25165 161578eea97d2765005a9b0eb9b26647 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 9.8E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS11055 4ac16ea524f064bd1ab6d6e923996b6e 277 PRINTS PR00111 Alpha/beta hydrolase fold signature 105 118 2.6E-11 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS11055 4ac16ea524f064bd1ab6d6e923996b6e 277 PRINTS PR00111 Alpha/beta hydrolase fold signature 47 62 2.6E-11 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS11055 4ac16ea524f064bd1ab6d6e923996b6e 277 PRINTS PR00111 Alpha/beta hydrolase fold signature 91 104 2.6E-11 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS11055 4ac16ea524f064bd1ab6d6e923996b6e 277 PRINTS PR00412 Epoxide hydrolase signature 206 222 3.9E-7 T 22-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 PP4_RS11055 4ac16ea524f064bd1ab6d6e923996b6e 277 PRINTS PR00412 Epoxide hydrolase signature 47 62 3.9E-7 T 22-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 PP4_RS11055 4ac16ea524f064bd1ab6d6e923996b6e 277 PRINTS PR00412 Epoxide hydrolase signature 239 261 3.9E-7 T 22-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 PP4_RS11055 4ac16ea524f064bd1ab6d6e923996b6e 277 PANTHER PTHR10992:SF771 15 264 2.9E-51 T 22-04-2016 PP4_RS11055 4ac16ea524f064bd1ab6d6e923996b6e 277 Pfam PF00561 alpha/beta hydrolase fold 23 247 3.5E-25 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS11055 4ac16ea524f064bd1ab6d6e923996b6e 277 Gene3D G3DSA:3.40.50.1820 14 264 1.7E-64 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS11055 4ac16ea524f064bd1ab6d6e923996b6e 277 PANTHER PTHR10992 15 264 2.9E-51 T 22-04-2016 PP4_RS11055 4ac16ea524f064bd1ab6d6e923996b6e 277 SUPERFAMILY SSF53474 14 263 2.16E-61 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS08765 77b82a8ff44ac633e3009ad16f31c2ad 319 Pfam PF00753 Metallo-beta-lactamase superfamily 22 103 1.8E-12 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS08765 77b82a8ff44ac633e3009ad16f31c2ad 319 PANTHER PTHR12553 1 150 1.5E-62 T 22-04-2016 PP4_RS08765 77b82a8ff44ac633e3009ad16f31c2ad 319 PANTHER PTHR12553 180 311 1.5E-62 T 22-04-2016 PP4_RS08765 77b82a8ff44ac633e3009ad16f31c2ad 319 Gene3D G3DSA:3.60.15.10 4 309 3.4E-70 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS08765 77b82a8ff44ac633e3009ad16f31c2ad 319 SUPERFAMILY SSF56281 1 309 2.36E-66 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS08765 77b82a8ff44ac633e3009ad16f31c2ad 319 Hamap MF_01818 Ribonuclease BN [rbn]. 1 309 34.326 T 22-04-2016 IPR013471 Ribonuclease Z/BN GO:0016891|GO:0042779 PP4_RS10605 93001632194989c34e81125a6f2ba5ed 817 PANTHER PTHR30489:SF6 212 813 3.1E-170 T 22-04-2016 PP4_RS10605 93001632194989c34e81125a6f2ba5ed 817 PANTHER PTHR30489:SF6 1 188 3.1E-170 T 22-04-2016 PP4_RS10605 93001632194989c34e81125a6f2ba5ed 817 PANTHER PTHR30489 212 813 3.1E-170 T 22-04-2016 PP4_RS10605 93001632194989c34e81125a6f2ba5ed 817 PANTHER PTHR30489 1 188 3.1E-170 T 22-04-2016 PP4_RS10605 93001632194989c34e81125a6f2ba5ed 817 Pfam PF02687 FtsX-like permease family 690 806 6.0E-9 T 22-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 PP4_RS10605 93001632194989c34e81125a6f2ba5ed 817 Pfam PF02687 FtsX-like permease family 244 366 1.2E-7 T 22-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 PP4_RS10605 93001632194989c34e81125a6f2ba5ed 817 Pfam PF12704 MacB-like periplasmic core domain 463 624 7.2E-11 T 22-04-2016 IPR025857 MacB-like periplasmic core domain PP4_RS17250 cd16023b66739796fa7d9e1cdfea7536 160 PANTHER PTHR36302 3 154 9.8E-27 T 22-04-2016 PP4_RS17250 cd16023b66739796fa7d9e1cdfea7536 160 Pfam PF04314 Protein of unknown function (DUF461) 28 130 1.9E-36 T 22-04-2016 IPR007410 DR1885-like metal-binding protein PP4_RS17250 cd16023b66739796fa7d9e1cdfea7536 160 SUPERFAMILY SSF110087 6 140 8.11E-44 T 22-04-2016 IPR007410 DR1885-like metal-binding protein PP4_RS17250 cd16023b66739796fa7d9e1cdfea7536 160 PANTHER PTHR36302:SF1 3 154 9.8E-27 T 22-04-2016 PP4_RS09045 99ad3100755ad0e2d661bbdff022f5d7 382 Pfam PF01494 FAD binding domain 6 347 5.1E-26 T 22-04-2016 IPR002938 FAD-binding domain GO:0071949 PP4_RS09045 99ad3100755ad0e2d661bbdff022f5d7 382 Gene3D G3DSA:3.50.50.60 273 357 7.9E-46 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS09045 99ad3100755ad0e2d661bbdff022f5d7 382 Gene3D G3DSA:3.50.50.60 5 178 7.9E-46 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS09045 99ad3100755ad0e2d661bbdff022f5d7 382 SUPERFAMILY SSF54373 176 277 4.9E-8 T 22-04-2016 PP4_RS09045 99ad3100755ad0e2d661bbdff022f5d7 382 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 286 301 3.8E-20 T 22-04-2016 PP4_RS09045 99ad3100755ad0e2d661bbdff022f5d7 382 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 336 352 3.8E-20 T 22-04-2016 PP4_RS09045 99ad3100755ad0e2d661bbdff022f5d7 382 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 151 166 3.8E-20 T 22-04-2016 PP4_RS09045 99ad3100755ad0e2d661bbdff022f5d7 382 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 301 317 3.8E-20 T 22-04-2016 PP4_RS09045 99ad3100755ad0e2d661bbdff022f5d7 382 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 3.8E-20 T 22-04-2016 PP4_RS09045 99ad3100755ad0e2d661bbdff022f5d7 382 PANTHER PTHR13789 6 377 1.2E-92 T 22-04-2016 PP4_RS09045 99ad3100755ad0e2d661bbdff022f5d7 382 PANTHER PTHR13789:SF186 6 377 1.2E-92 T 22-04-2016 PP4_RS09045 99ad3100755ad0e2d661bbdff022f5d7 382 SUPERFAMILY SSF51905 6 172 1.4E-61 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS09045 99ad3100755ad0e2d661bbdff022f5d7 382 SUPERFAMILY SSF51905 273 372 1.4E-61 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS06960 9d2129717d6767ebf4c10a18a695a69f 352 SUPERFAMILY SSF52922 220 350 9.82E-44 T 22-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 PP4_RS06960 9d2129717d6767ebf4c10a18a695a69f 352 Pfam PF02780 Transketolase, C-terminal domain 226 339 2.1E-37 T 22-04-2016 IPR033248 Transketolase, C-terminal domain PP4_RS06960 9d2129717d6767ebf4c10a18a695a69f 352 Pfam PF02779 Transketolase, pyrimidine binding domain 18 193 5.1E-44 T 22-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain PP4_RS06960 9d2129717d6767ebf4c10a18a695a69f 352 PANTHER PTHR11624:SF55 5 352 2.5E-246 T 22-04-2016 PP4_RS06960 9d2129717d6767ebf4c10a18a695a69f 352 Gene3D G3DSA:3.40.50.970 16 227 8.7E-82 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS06960 9d2129717d6767ebf4c10a18a695a69f 352 Gene3D G3DSA:3.40.50.920 229 345 2.4E-44 T 22-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 PP4_RS06960 9d2129717d6767ebf4c10a18a695a69f 352 PANTHER PTHR11624 5 352 2.5E-246 T 22-04-2016 IPR033247 Transketolase family PP4_RS06960 9d2129717d6767ebf4c10a18a695a69f 352 SMART SM00861 19 194 2.0E-65 T 22-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain PP4_RS06960 9d2129717d6767ebf4c10a18a695a69f 352 SUPERFAMILY SSF52518 17 235 1.02E-68 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS07950 da8dff73df2b0062e2b295c2a04f25ae 270 SUPERFAMILY SSF103088 148 259 1.7E-35 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS07950 da8dff73df2b0062e2b295c2a04f25ae 270 Gene3D G3DSA:3.30.1330.60 149 259 1.2E-37 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS07950 da8dff73df2b0062e2b295c2a04f25ae 270 PANTHER PTHR30128 144 265 6.5E-38 T 22-04-2016 PP4_RS07950 da8dff73df2b0062e2b295c2a04f25ae 270 Pfam PF14346 Domain of unknown function (DUF4398) 17 116 1.5E-19 T 22-04-2016 IPR025511 Domain of unknown function DUF4398 PP4_RS07950 da8dff73df2b0062e2b295c2a04f25ae 270 Pfam PF00691 OmpA family 158 253 4.0E-24 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS07950 da8dff73df2b0062e2b295c2a04f25ae 270 PRINTS PR01021 OMPA domain signature 159 181 4.0E-10 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PP4_RS07950 da8dff73df2b0062e2b295c2a04f25ae 270 PRINTS PR01021 OMPA domain signature 204 220 4.0E-10 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PP4_RS07950 da8dff73df2b0062e2b295c2a04f25ae 270 PRINTS PR01021 OMPA domain signature 189 204 4.0E-10 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PP4_RS18730 ff17b91cd54e1f8f0aa8e41ea12f7ee0 298 Gene3D G3DSA:3.30.565.10 177 282 2.7E-7 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS18730 ff17b91cd54e1f8f0aa8e41ea12f7ee0 298 PANTHER PTHR24421:SF1 72 297 2.4E-54 T 22-04-2016 PP4_RS18730 ff17b91cd54e1f8f0aa8e41ea12f7ee0 298 Pfam PF07730 Histidine kinase 87 151 6.5E-15 T 22-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 PP4_RS18730 ff17b91cd54e1f8f0aa8e41ea12f7ee0 298 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 194 280 3.3E-6 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS18730 ff17b91cd54e1f8f0aa8e41ea12f7ee0 298 SUPERFAMILY SSF55874 186 282 5.12E-14 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS18730 ff17b91cd54e1f8f0aa8e41ea12f7ee0 298 PANTHER PTHR24421 72 297 2.4E-54 T 22-04-2016 PP4_RS18175 c4459ac18e0c67d9a026d3712b6ce11b 444 Pfam PF01136 Peptidase family U32 79 337 4.9E-96 T 22-04-2016 IPR001539 Peptidase U32 GO:0006508|GO:0008233 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PP4_RS18175 c4459ac18e0c67d9a026d3712b6ce11b 444 PANTHER PTHR30217 1 209 4.0E-222 T 22-04-2016 PP4_RS18175 c4459ac18e0c67d9a026d3712b6ce11b 444 PANTHER PTHR30217 241 441 4.0E-222 T 22-04-2016 PP4_RS18175 c4459ac18e0c67d9a026d3712b6ce11b 444 Pfam PF16325 Peptidase family U32 C-terminal domain 354 435 2.3E-17 T 22-04-2016 IPR032525 Peptidase family U32, C-terminal KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PP4_RS18175 c4459ac18e0c67d9a026d3712b6ce11b 444 PANTHER PTHR30217:SF6 1 209 4.0E-222 T 22-04-2016 PP4_RS18175 c4459ac18e0c67d9a026d3712b6ce11b 444 PANTHER PTHR30217:SF6 241 441 4.0E-222 T 22-04-2016 PP4_RS18175 c4459ac18e0c67d9a026d3712b6ce11b 444 ProSitePatterns PS01276 Peptidase family U32 signature. 165 183 - T 22-04-2016 IPR001539 Peptidase U32 GO:0006508|GO:0008233 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PP4_RS02535 f91c3f8677a125d395a12b470e5a1c5f 228 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 22-04-2016 IPR018280 Ribosomal protein S3, conserved site PP4_RS02535 f91c3f8677a125d395a12b470e5a1c5f 228 SUPERFAMILY SSF54821 108 206 2.22E-42 T 22-04-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 PP4_RS02535 f91c3f8677a125d395a12b470e5a1c5f 228 PANTHER PTHR11760 2 222 3.7E-145 T 22-04-2016 PP4_RS02535 f91c3f8677a125d395a12b470e5a1c5f 228 SMART SM00322 60 125 3.0E-9 T 22-04-2016 IPR004087 K Homology domain GO:0003676 PP4_RS02535 f91c3f8677a125d395a12b470e5a1c5f 228 Gene3D G3DSA:3.30.1140.32 108 207 1.0E-48 T 22-04-2016 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 PP4_RS02535 f91c3f8677a125d395a12b470e5a1c5f 228 PANTHER PTHR11760:SF19 2 222 3.7E-145 T 22-04-2016 PP4_RS02535 f91c3f8677a125d395a12b470e5a1c5f 228 Pfam PF07650 KH domain 39 111 1.1E-21 T 22-04-2016 IPR004044 K Homology domain, type 2 GO:0003723 PP4_RS02535 f91c3f8677a125d395a12b470e5a1c5f 228 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 39.637 T 22-04-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 PP4_RS02535 f91c3f8677a125d395a12b470e5a1c5f 228 Gene3D G3DSA:3.30.300.20 17 107 3.1E-33 T 22-04-2016 IPR015946 K homology domain-like, alpha/beta PP4_RS02535 f91c3f8677a125d395a12b470e5a1c5f 228 SUPERFAMILY SSF54814 2 106 2.88E-37 T 22-04-2016 IPR009019 K homology domain, prokaryotic type GO:0003723 PP4_RS02535 f91c3f8677a125d395a12b470e5a1c5f 228 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 209 1.4E-97 T 22-04-2016 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 PP4_RS02535 f91c3f8677a125d395a12b470e5a1c5f 228 Pfam PF00189 Ribosomal protein S3, C-terminal domain 120 202 7.3E-42 T 22-04-2016 PP4_RS20560 228faa0280c0794e5cf5f608b5b365aa 87 Gene3D G3DSA:1.25.40.10 18 85 1.0E-7 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS20560 228faa0280c0794e5cf5f608b5b365aa 87 SUPERFAMILY SSF81901 19 86 3.01E-6 T 22-04-2016 PP4_RS16165 cfafb6f7f881d57b6e64a79f6cab54f1 377 Gene3D G3DSA:3.90.1150.10 267 374 7.9E-11 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS16165 cfafb6f7f881d57b6e64a79f6cab54f1 377 PANTHER PTHR21152 24 374 9.0E-69 T 22-04-2016 PP4_RS16165 cfafb6f7f881d57b6e64a79f6cab54f1 377 PIRSF PIRSF000524 18 377 1.5E-42 T 22-04-2016 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 PP4_RS16165 cfafb6f7f881d57b6e64a79f6cab54f1 377 SUPERFAMILY SSF53383 7 373 1.27E-74 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS16165 cfafb6f7f881d57b6e64a79f6cab54f1 377 Gene3D G3DSA:3.40.640.10 21 266 3.1E-46 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS16165 cfafb6f7f881d57b6e64a79f6cab54f1 377 Pfam PF00266 Aminotransferase class-V 22 291 5.5E-14 T 22-04-2016 IPR000192 Aminotransferase class V domain PP4_RS16165 cfafb6f7f881d57b6e64a79f6cab54f1 377 PANTHER PTHR21152:SF21 24 374 9.0E-69 T 22-04-2016 PP4_RS08810 2e1039e20e856c27283af812ebbe5e30 276 Gene3D G3DSA:3.40.50.1820 2 275 1.2E-77 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS08810 2e1039e20e856c27283af812ebbe5e30 276 Pfam PF00561 alpha/beta hydrolase fold 23 256 4.2E-23 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS08810 2e1039e20e856c27283af812ebbe5e30 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 219 233 2.4E-10 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS08810 2e1039e20e856c27283af812ebbe5e30 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 93 106 2.4E-10 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS08810 2e1039e20e856c27283af812ebbe5e30 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 49 64 2.4E-10 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS08810 2e1039e20e856c27283af812ebbe5e30 276 SUPERFAMILY SSF53474 2 275 4.3E-65 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS08810 2e1039e20e856c27283af812ebbe5e30 276 PANTHER PTHR10992 1 276 2.5E-125 T 22-04-2016 PP4_RS08810 2e1039e20e856c27283af812ebbe5e30 276 PANTHER PTHR10992:SF859 1 276 2.5E-125 T 22-04-2016 PP4_RS22130 11f3ab6528b19a4374c86907311d4b4d 266 Pfam PF12680 SnoaL-like domain 18 117 1.2E-8 T 22-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain PP4_RS22130 11f3ab6528b19a4374c86907311d4b4d 266 Pfam PF12833 Helix-turn-helix domain 178 259 8.7E-20 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS22130 11f3ab6528b19a4374c86907311d4b4d 266 SUPERFAMILY SSF46689 223 260 7.62E-8 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS22130 11f3ab6528b19a4374c86907311d4b4d 266 Gene3D G3DSA:3.10.450.50 14 122 1.4E-14 T 22-04-2016 IPR032710 NTF2-like domain PP4_RS22130 11f3ab6528b19a4374c86907311d4b4d 266 SMART SM00342 172 257 4.0E-20 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS22130 11f3ab6528b19a4374c86907311d4b4d 266 SUPERFAMILY SSF54427 11 123 1.35E-17 T 22-04-2016 IPR032710 NTF2-like domain PP4_RS22130 11f3ab6528b19a4374c86907311d4b4d 266 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 209 253 - T 22-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PP4_RS22130 11f3ab6528b19a4374c86907311d4b4d 266 Gene3D G3DSA:1.10.10.60 170 209 9.9E-7 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS22130 11f3ab6528b19a4374c86907311d4b4d 266 Gene3D G3DSA:1.10.10.60 210 259 1.5E-10 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS22130 11f3ab6528b19a4374c86907311d4b4d 266 PANTHER PTHR11019 145 265 4.0E-19 T 22-04-2016 PP4_RS22950 832186dca2d7867399d0769c5013d730 504 SUPERFAMILY SSF56954 7 467 2.09E-94 T 22-04-2016 PP4_RS22950 832186dca2d7867399d0769c5013d730 504 PANTHER PTHR30203:SF3 8 486 1.1E-102 T 22-04-2016 PP4_RS22950 832186dca2d7867399d0769c5013d730 504 Gene3D G3DSA:1.20.1600.10 54 90 6.5E-90 T 22-04-2016 PP4_RS22950 832186dca2d7867399d0769c5013d730 504 Gene3D G3DSA:1.20.1600.10 142 315 6.5E-90 T 22-04-2016 PP4_RS22950 832186dca2d7867399d0769c5013d730 504 Gene3D G3DSA:1.20.1600.10 351 465 6.5E-90 T 22-04-2016 PP4_RS22950 832186dca2d7867399d0769c5013d730 504 PANTHER PTHR30203 8 486 1.1E-102 T 22-04-2016 PP4_RS22950 832186dca2d7867399d0769c5013d730 504 Gene3D G3DSA:2.20.200.10 110 141 9.2E-8 T 22-04-2016 PP4_RS22950 832186dca2d7867399d0769c5013d730 504 Gene3D G3DSA:2.20.200.10 316 334 9.2E-8 T 22-04-2016 PP4_RS22950 832186dca2d7867399d0769c5013d730 504 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 11 464 2.3E-90 T 22-04-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 PP4_RS22950 832186dca2d7867399d0769c5013d730 504 Pfam PF02321 Outer membrane efflux protein 279 462 4.0E-18 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PP4_RS22950 832186dca2d7867399d0769c5013d730 504 Pfam PF02321 Outer membrane efflux protein 64 254 3.3E-25 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PP4_RS02595 a8135ee903fe540e2d3d713c95e95c24 58 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 1 58 19.204 T 22-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 PP4_RS02595 a8135ee903fe540e2d3d713c95e95c24 58 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 4 57 1.3E-18 T 22-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 PP4_RS02595 a8135ee903fe540e2d3d713c95e95c24 58 PANTHER PTHR15892 1 57 1.7E-22 T 22-04-2016 PP4_RS02595 a8135ee903fe540e2d3d713c95e95c24 58 Gene3D G3DSA:3.30.1390.20 1 57 1.3E-24 T 22-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain PP4_RS02595 a8135ee903fe540e2d3d713c95e95c24 58 Pfam PF00327 Ribosomal protein L30p/L7e 4 50 4.2E-16 T 22-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain PP4_RS02595 a8135ee903fe540e2d3d713c95e95c24 58 SUPERFAMILY SSF55129 1 57 1.07E-18 T 22-04-2016 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain PP4_RS02595 a8135ee903fe540e2d3d713c95e95c24 58 PIRSF PIRSF002211 1 58 4.2E-22 T 22-04-2016 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 PP4_RS08115 b11e7d50e2a59fde2eddcfed73156d7a 262 SUPERFAMILY SSF53474 5 255 4.55E-29 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS08115 b11e7d50e2a59fde2eddcfed73156d7a 262 Pfam PF12697 Alpha/beta hydrolase family 5 249 5.9E-13 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS08115 b11e7d50e2a59fde2eddcfed73156d7a 262 Gene3D G3DSA:3.40.50.1820 5 258 2.7E-30 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS08115 b11e7d50e2a59fde2eddcfed73156d7a 262 PANTHER PTHR10992 47 258 1.0E-16 T 22-04-2016 PP4_RS20110 875c45bccca034e1356b26fe8187ddd1 368 PANTHER PTHR30244 12 368 4.2E-128 T 22-04-2016 PP4_RS20110 875c45bccca034e1356b26fe8187ddd1 368 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 15 361 1.5E-112 T 22-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase PP4_RS20110 875c45bccca034e1356b26fe8187ddd1 368 Gene3D G3DSA:3.90.1150.10 249 366 6.0E-35 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS20110 875c45bccca034e1356b26fe8187ddd1 368 Gene3D G3DSA:3.40.640.10 13 247 1.2E-73 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS20110 875c45bccca034e1356b26fe8187ddd1 368 SUPERFAMILY SSF53383 13 365 6.6E-97 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS20110 875c45bccca034e1356b26fe8187ddd1 368 PIRSF PIRSF000390 1 367 3.7E-96 T 22-04-2016 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase PP4_RS20110 875c45bccca034e1356b26fe8187ddd1 368 PANTHER PTHR30244:SF13 12 368 4.2E-128 T 22-04-2016 PP4_RS05350 9abac1cc0e9e3f06a95dbcc34c518133 446 Gene3D G3DSA:3.40.640.10 125 342 6.6E-60 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS05350 9abac1cc0e9e3f06a95dbcc34c518133 446 SUPERFAMILY SSF46785 6 69 6.65E-14 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS05350 9abac1cc0e9e3f06a95dbcc34c518133 446 PANTHER PTHR11751:SF386 74 444 1.1E-82 T 22-04-2016 PP4_RS05350 9abac1cc0e9e3f06a95dbcc34c518133 446 Pfam PF00155 Aminotransferase class I and II 96 438 1.6E-39 T 22-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PP4_RS05350 9abac1cc0e9e3f06a95dbcc34c518133 446 Gene3D G3DSA:1.10.10.10 7 71 3.3E-16 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS05350 9abac1cc0e9e3f06a95dbcc34c518133 446 Gene3D G3DSA:3.90.1150.10 343 442 1.5E-5 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS05350 9abac1cc0e9e3f06a95dbcc34c518133 446 SUPERFAMILY SSF53383 87 437 8.07E-78 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS05350 9abac1cc0e9e3f06a95dbcc34c518133 446 PANTHER PTHR11751 74 444 1.1E-82 T 22-04-2016 PP4_RS05350 9abac1cc0e9e3f06a95dbcc34c518133 446 Pfam PF00392 Bacterial regulatory proteins, gntR family 8 65 7.8E-12 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS05350 9abac1cc0e9e3f06a95dbcc34c518133 446 SMART SM00345 6 65 7.6E-9 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS10920 c6b6168d68bb6ffe1a7de8ee681c6233 331 Gene3D G3DSA:3.40.50.720 1 136 1.4E-38 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS10920 c6b6168d68bb6ffe1a7de8ee681c6233 331 PANTHER PTHR22604:SF92 2 331 1.1E-103 T 22-04-2016 PP4_RS10920 c6b6168d68bb6ffe1a7de8ee681c6233 331 SUPERFAMILY SSF55347 128 289 6.7E-32 T 22-04-2016 PP4_RS10920 c6b6168d68bb6ffe1a7de8ee681c6233 331 TIGRFAM TIGR04380 myo_inos_iolG: inositol 2-dehydrogenase 1 330 2.3E-120 T 22-04-2016 IPR030827 Inositol 2-dehydrogenase PP4_RS10920 c6b6168d68bb6ffe1a7de8ee681c6233 331 Gene3D G3DSA:3.30.360.10 137 331 8.4E-52 T 22-04-2016 PP4_RS10920 c6b6168d68bb6ffe1a7de8ee681c6233 331 SUPERFAMILY SSF51735 2 146 1.71E-38 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS10920 c6b6168d68bb6ffe1a7de8ee681c6233 331 PANTHER PTHR22604 2 331 1.1E-103 T 22-04-2016 PP4_RS10920 c6b6168d68bb6ffe1a7de8ee681c6233 331 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 132 237 2.7E-8 T 22-04-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 PP4_RS10920 c6b6168d68bb6ffe1a7de8ee681c6233 331 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 3 118 9.9E-22 T 22-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 PP4_RS18565 73d555b46bb97314b235d776b6920335 276 Pfam PF14489 QueF-like protein 190 264 2.5E-24 T 22-04-2016 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF GO:0008616|GO:0033739 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 PP4_RS18565 73d555b46bb97314b235d776b6920335 276 PANTHER PTHR34354 1 276 1.1E-90 T 22-04-2016 PP4_RS18565 73d555b46bb97314b235d776b6920335 276 PANTHER PTHR34354:SF1 1 276 1.1E-90 T 22-04-2016 PP4_RS18565 73d555b46bb97314b235d776b6920335 276 SUPERFAMILY SSF55620 179 264 2.52E-11 T 22-04-2016 PP4_RS18565 73d555b46bb97314b235d776b6920335 276 Gene3D G3DSA:3.30.1130.10 16 132 1.7E-37 T 22-04-2016 PP4_RS18565 73d555b46bb97314b235d776b6920335 276 PIRSF PIRSF004750 1 276 1.5E-119 T 22-04-2016 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 PP4_RS18565 73d555b46bb97314b235d776b6920335 276 Pfam PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term 16 125 8.6E-45 T 22-04-2016 IPR029139 NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 PP4_RS18565 73d555b46bb97314b235d776b6920335 276 Hamap MF_00817 NADPH-dependent 7-cyano-7-deazaguanine reductase [queF]. 1 276 150.391 T 22-04-2016 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 PP4_RS18565 73d555b46bb97314b235d776b6920335 276 Gene3D G3DSA:3.30.1130.10 141 276 1.6E-51 T 22-04-2016 PP4_RS18565 73d555b46bb97314b235d776b6920335 276 TIGRFAM TIGR03138 QueF: queuine synthase 5 276 3.6E-120 T 22-04-2016 IPR016428 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 2 GO:0005737|GO:0008616|GO:0046857|GO:0055114 KEGG: 00790+1.7.1.13|MetaCyc: PWY-6700|UniPathway: UPA00392 PP4_RS10825 108c1f8feee29faff2d48af435dd376a 381 Pfam PF00990 Diguanylate cyclase, GGDEF domain 212 367 1.4E-36 T 22-04-2016 IPR000160 GGDEF domain PP4_RS10825 108c1f8feee29faff2d48af435dd376a 381 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 209 370 6.5E-36 T 22-04-2016 IPR000160 GGDEF domain PP4_RS10825 108c1f8feee29faff2d48af435dd376a 381 PANTHER PTHR10799 73 217 4.2E-21 T 22-04-2016 PP4_RS10825 108c1f8feee29faff2d48af435dd376a 381 PANTHER PTHR10799 244 367 4.2E-21 T 22-04-2016 PP4_RS10825 108c1f8feee29faff2d48af435dd376a 381 PANTHER PTHR10799:SF710 73 217 4.2E-21 T 22-04-2016 PP4_RS10825 108c1f8feee29faff2d48af435dd376a 381 PANTHER PTHR10799:SF710 244 367 4.2E-21 T 22-04-2016 PP4_RS10825 108c1f8feee29faff2d48af435dd376a 381 SUPERFAMILY SSF55073 217 372 7.3E-39 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS10825 108c1f8feee29faff2d48af435dd376a 381 Gene3D G3DSA:3.30.70.270 214 377 4.5E-43 T 22-04-2016 PP4_RS10825 108c1f8feee29faff2d48af435dd376a 381 SMART SM00267 201 372 3.6E-46 T 22-04-2016 IPR000160 GGDEF domain PP4_RS03965 ca9b950cc4bd88e1664fe6bc768e3e08 509 Gene3D G3DSA:2.20.200.10 110 150 2.6E-12 T 22-04-2016 PP4_RS03965 ca9b950cc4bd88e1664fe6bc768e3e08 509 Gene3D G3DSA:2.20.200.10 324 361 2.6E-12 T 22-04-2016 PP4_RS03965 ca9b950cc4bd88e1664fe6bc768e3e08 509 SUPERFAMILY SSF56954 5 25 9.29E-94 T 22-04-2016 PP4_RS03965 ca9b950cc4bd88e1664fe6bc768e3e08 509 SUPERFAMILY SSF56954 58 478 9.29E-94 T 22-04-2016 PP4_RS03965 ca9b950cc4bd88e1664fe6bc768e3e08 509 PANTHER PTHR30203:SF3 19 495 2.1E-148 T 22-04-2016 PP4_RS03965 ca9b950cc4bd88e1664fe6bc768e3e08 509 Pfam PF02321 Outer membrane efflux protein 292 474 1.3E-21 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PP4_RS03965 ca9b950cc4bd88e1664fe6bc768e3e08 509 Pfam PF02321 Outer membrane efflux protein 71 263 5.1E-21 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PP4_RS03965 ca9b950cc4bd88e1664fe6bc768e3e08 509 PANTHER PTHR30203 19 495 2.1E-148 T 22-04-2016 PP4_RS03965 ca9b950cc4bd88e1664fe6bc768e3e08 509 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 16 476 1.5E-108 T 22-04-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 PP4_RS03965 ca9b950cc4bd88e1664fe6bc768e3e08 509 Gene3D G3DSA:1.20.1600.10 151 323 6.8E-91 T 22-04-2016 PP4_RS03965 ca9b950cc4bd88e1664fe6bc768e3e08 509 Gene3D G3DSA:1.20.1600.10 57 97 6.8E-91 T 22-04-2016 PP4_RS03965 ca9b950cc4bd88e1664fe6bc768e3e08 509 Gene3D G3DSA:1.20.1600.10 363 476 6.8E-91 T 22-04-2016 PP4_RS10725 0ea3c9f167e4eddf54ff78a75016888c 303 Pfam PF03466 LysR substrate binding domain 91 294 2.9E-39 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS10725 0ea3c9f167e4eddf54ff78a75016888c 303 SUPERFAMILY SSF53850 92 298 4.89E-41 T 22-04-2016 PP4_RS10725 0ea3c9f167e4eddf54ff78a75016888c 303 Gene3D G3DSA:3.40.190.10 95 178 2.0E-22 T 22-04-2016 PP4_RS10725 0ea3c9f167e4eddf54ff78a75016888c 303 PANTHER PTHR30537 1 303 7.4E-161 T 22-04-2016 PP4_RS10725 0ea3c9f167e4eddf54ff78a75016888c 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 66 2.0E-15 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS10725 0ea3c9f167e4eddf54ff78a75016888c 303 SUPERFAMILY SSF46785 5 115 5.29E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS10725 0ea3c9f167e4eddf54ff78a75016888c 303 Gene3D G3DSA:3.40.190.10 179 262 2.0E-20 T 22-04-2016 PP4_RS10725 0ea3c9f167e4eddf54ff78a75016888c 303 Gene3D G3DSA:1.10.10.10 6 85 4.7E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS10725 0ea3c9f167e4eddf54ff78a75016888c 303 PANTHER PTHR30537:SF18 1 303 7.4E-161 T 22-04-2016 PP4_RS05870 9e64d42565f9473db794e8d938776c23 109 Pfam PF13467 Ribbon-helix-helix domain 35 102 3.0E-18 T 22-04-2016 IPR027373 Ribbon-helix-helix domain PP4_RS25770 7523e7f8f2326235c2f48b9233ae1152 361 Gene3D G3DSA:3.30.450.20 4 111 6.7E-21 T 22-04-2016 PP4_RS25770 7523e7f8f2326235c2f48b9233ae1152 361 Gene3D G3DSA:1.10.287.130 128 189 3.1E-12 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS25770 7523e7f8f2326235c2f48b9233ae1152 361 SMART SM00388 132 197 1.8E-15 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS25770 7523e7f8f2326235c2f48b9233ae1152 361 SMART SM00387 236 356 2.9E-28 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS25770 7523e7f8f2326235c2f48b9233ae1152 361 Gene3D G3DSA:3.30.565.10 199 356 5.4E-36 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS25770 7523e7f8f2326235c2f48b9233ae1152 361 PRINTS PR00344 Bacterial sensor protein C-terminal signature 317 335 2.6E-11 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS25770 7523e7f8f2326235c2f48b9233ae1152 361 PRINTS PR00344 Bacterial sensor protein C-terminal signature 340 353 2.6E-11 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS25770 7523e7f8f2326235c2f48b9233ae1152 361 PRINTS PR00344 Bacterial sensor protein C-terminal signature 288 302 2.6E-11 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS25770 7523e7f8f2326235c2f48b9233ae1152 361 Pfam PF00512 His Kinase A (phospho-acceptor) domain 136 189 4.2E-15 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS25770 7523e7f8f2326235c2f48b9233ae1152 361 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 237 356 7.3E-14 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS25770 7523e7f8f2326235c2f48b9233ae1152 361 Pfam PF00989 PAS fold 9 105 1.7E-6 T 22-04-2016 IPR013767 PAS fold GO:0006355 PP4_RS25770 7523e7f8f2326235c2f48b9233ae1152 361 PANTHER PTHR24423 288 358 4.1E-155 T 22-04-2016 PP4_RS25770 7523e7f8f2326235c2f48b9233ae1152 361 PANTHER PTHR24423 1 272 4.1E-155 T 22-04-2016 PP4_RS25770 7523e7f8f2326235c2f48b9233ae1152 361 SUPERFAMILY SSF47384 127 194 3.34E-13 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS25770 7523e7f8f2326235c2f48b9233ae1152 361 SMART SM00091 6 74 1.2E-4 T 22-04-2016 IPR000014 PAS domain PP4_RS25770 7523e7f8f2326235c2f48b9233ae1152 361 SUPERFAMILY SSF55874 200 354 1.57E-33 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS25770 7523e7f8f2326235c2f48b9233ae1152 361 SUPERFAMILY SSF55785 5 107 3.32E-9 T 22-04-2016 IPR000014 PAS domain PP4_RS25770 7523e7f8f2326235c2f48b9233ae1152 361 PANTHER PTHR24423:SF488 288 358 4.1E-155 T 22-04-2016 PP4_RS25770 7523e7f8f2326235c2f48b9233ae1152 361 PANTHER PTHR24423:SF488 1 272 4.1E-155 T 22-04-2016 PP4_RS00640 2c5a03dfead962538817630e5c2aedb8 156 SUPERFAMILY SSF89872 26 156 3.79E-47 T 22-04-2016 IPR014453 Inhibitor of vertebrate lysozyme GO:0042597|GO:0043086 PP4_RS00640 2c5a03dfead962538817630e5c2aedb8 156 Pfam PF08816 Inhibitor of vertebrate lysozyme (Ivy) 37 154 4.2E-45 T 22-04-2016 PP4_RS00640 2c5a03dfead962538817630e5c2aedb8 156 Gene3D G3DSA:3.40.1420.10 27 156 2.5E-48 T 22-04-2016 IPR014453 Inhibitor of vertebrate lysozyme GO:0042597|GO:0043086 PP4_RS00640 2c5a03dfead962538817630e5c2aedb8 156 PIRSF PIRSF009103 1 156 6.2E-68 T 22-04-2016 IPR014453 Inhibitor of vertebrate lysozyme GO:0042597|GO:0043086 PP4_RS21645 e59f14cd0aed3df4f2b9ddc587982dff 447 PANTHER PTHR37944:SF1 24 447 1.8E-175 T 22-04-2016 PP4_RS21645 e59f14cd0aed3df4f2b9ddc587982dff 447 PANTHER PTHR37944 24 447 1.8E-175 T 22-04-2016 PP4_RS21645 e59f14cd0aed3df4f2b9ddc587982dff 447 Pfam PF04966 Carbohydrate-selective porin, OprB family 75 447 1.8E-114 T 22-04-2016 IPR007049 Carbohydrate-selective porin OprB GO:0005215|GO:0006810|GO:0016021 PP4_RS25690 5eb1f1b45917838b47b194abbf65f111 401 Hamap MF_00372 Imidazolonepropionase [hutI]. 2 399 43.053 T 22-04-2016 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 PP4_RS25690 5eb1f1b45917838b47b194abbf65f111 401 PANTHER PTHR22642 22 399 1.1E-153 T 22-04-2016 PP4_RS25690 5eb1f1b45917838b47b194abbf65f111 401 SUPERFAMILY SSF51338 361 398 3.64E-29 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PP4_RS25690 5eb1f1b45917838b47b194abbf65f111 401 SUPERFAMILY SSF51338 1 60 3.64E-29 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PP4_RS25690 5eb1f1b45917838b47b194abbf65f111 401 Pfam PF01979 Amidohydrolase family 58 397 4.1E-21 T 22-04-2016 IPR006680 Amidohydrolase-related GO:0016787 PP4_RS25690 5eb1f1b45917838b47b194abbf65f111 401 PANTHER PTHR22642:SF1 22 399 1.1E-153 T 22-04-2016 PP4_RS25690 5eb1f1b45917838b47b194abbf65f111 401 TIGRFAM TIGR01224 hutI: imidazolonepropionase 21 397 7.8E-150 T 22-04-2016 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 PP4_RS25690 5eb1f1b45917838b47b194abbf65f111 401 SUPERFAMILY SSF51556 60 360 5.24E-88 T 22-04-2016 IPR032466 Metal-dependent hydrolase PP4_RS25690 5eb1f1b45917838b47b194abbf65f111 401 Gene3D G3DSA:2.30.40.10 20 67 2.2E-13 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PP4_RS25690 5eb1f1b45917838b47b194abbf65f111 401 Gene3D G3DSA:3.20.20.140 68 356 2.5E-44 T 22-04-2016 PP4_RS06345 b51f0514d39d00dfd1b9a1f23ed622a2 1117 Pfam PF00668 Condensation domain 44 338 4.9E-84 T 22-04-2016 IPR001242 Condensation domain PP4_RS06345 b51f0514d39d00dfd1b9a1f23ed622a2 1117 Pfam PF00550 Phosphopantetheine attachment site 1029 1093 9.6E-14 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS06345 b51f0514d39d00dfd1b9a1f23ed622a2 1117 Pfam PF00501 AMP-binding enzyme 507 912 2.4E-97 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PP4_RS06345 b51f0514d39d00dfd1b9a1f23ed622a2 1117 PANTHER PTHR24095 42 1093 0.0 T 22-04-2016 PP4_RS06345 b51f0514d39d00dfd1b9a1f23ed622a2 1117 SMART SM00823 Phosphopantetheine attachment site 1028 1097 0.0032 T 22-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 PP4_RS06345 b51f0514d39d00dfd1b9a1f23ed622a2 1117 PANTHER PTHR24095:SF173 42 1093 0.0 T 22-04-2016 PP4_RS06345 b51f0514d39d00dfd1b9a1f23ed622a2 1117 ProSitePatterns PS00455 Putative AMP-binding domain signature. 647 658 - T 22-04-2016 IPR020845 AMP-binding, conserved site PP4_RS06345 b51f0514d39d00dfd1b9a1f23ed622a2 1117 SUPERFAMILY SSF52777 226 493 8.67E-66 T 22-04-2016 PP4_RS06345 b51f0514d39d00dfd1b9a1f23ed622a2 1117 Pfam PF13193 AMP-binding enzyme C-terminal domain 920 1002 3.5E-13 T 22-04-2016 IPR025110 AMP-binding enzyme C-terminal domain PP4_RS06345 b51f0514d39d00dfd1b9a1f23ed622a2 1117 Pfam PF13745 HxxPF-repeated domain 362 452 4.1E-33 T 22-04-2016 PP4_RS06345 b51f0514d39d00dfd1b9a1f23ed622a2 1117 Gene3D G3DSA:3.30.300.30 907 1030 3.7E-40 T 22-04-2016 PP4_RS06345 b51f0514d39d00dfd1b9a1f23ed622a2 1117 Gene3D G3DSA:3.40.50.980 499 655 1.5E-55 T 22-04-2016 PP4_RS06345 b51f0514d39d00dfd1b9a1f23ed622a2 1117 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 527 936 4.9E-131 T 22-04-2016 IPR010071 Amino acid adenylation domain PP4_RS06345 b51f0514d39d00dfd1b9a1f23ed622a2 1117 Gene3D G3DSA:1.10.1200.10 1031 1096 1.2E-26 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS06345 b51f0514d39d00dfd1b9a1f23ed622a2 1117 SUPERFAMILY SSF56801 465 1041 3.27E-164 T 22-04-2016 PP4_RS06345 b51f0514d39d00dfd1b9a1f23ed622a2 1117 SUPERFAMILY SSF52777 47 220 4.34E-53 T 22-04-2016 PP4_RS06345 b51f0514d39d00dfd1b9a1f23ed622a2 1117 SUPERFAMILY SSF47336 1020 1093 3.14E-19 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS06345 b51f0514d39d00dfd1b9a1f23ed622a2 1117 Gene3D G3DSA:3.40.50.980 656 819 5.6E-47 T 22-04-2016 PP4_RS06345 b51f0514d39d00dfd1b9a1f23ed622a2 1117 Gene3D G3DSA:2.30.38.10 822 902 1.6E-21 T 22-04-2016 PP4_RS25505 494be965994562c00589ae0f842b9100 317 Gene3D G3DSA:3.40.50.20 4 130 9.6E-54 T 22-04-2016 IPR016185 Pre-ATP-grasp domain PP4_RS25505 494be965994562c00589ae0f842b9100 317 SUPERFAMILY SSF56059 124 313 8.83E-56 T 22-04-2016 PP4_RS25505 494be965994562c00589ae0f842b9100 317 Gene3D G3DSA:3.30.1490.20 138 192 3.8E-27 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 PP4_RS25505 494be965994562c00589ae0f842b9100 317 PANTHER PTHR21621:SF4 1 317 5.8E-157 T 22-04-2016 PP4_RS25505 494be965994562c00589ae0f842b9100 317 Gene3D G3DSA:3.30.470.20 193 301 6.9E-50 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PP4_RS25505 494be965994562c00589ae0f842b9100 317 Hamap MF_00162 Glutathione synthetase [gshB]. 1 317 173.87 T 22-04-2016 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 PP4_RS25505 494be965994562c00589ae0f842b9100 317 PANTHER PTHR21621 1 317 5.8E-157 T 22-04-2016 PP4_RS25505 494be965994562c00589ae0f842b9100 317 Pfam PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain 125 297 1.5E-77 T 22-04-2016 IPR004218 Prokaryotic glutathione synthetase, ATP-binding GO:0004363|GO:0005524|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 PP4_RS25505 494be965994562c00589ae0f842b9100 317 Pfam PF02951 Prokaryotic glutathione synthetase, N-terminal domain 4 121 4.1E-45 T 22-04-2016 IPR004215 Prokaryotic glutathione synthetase, N-terminal GO:0004363|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 PP4_RS25505 494be965994562c00589ae0f842b9100 317 TIGRFAM TIGR01380 glut_syn: glutathione synthase 4 313 2.4E-135 T 22-04-2016 IPR006284 Glutathione synthetase, prokaryotic GO:0004363|GO:0005829|GO:0006750 KEGG: 00270+6.3.2.3|KEGG: 00480+6.3.2.3|UniPathway: UPA00142 PP4_RS25505 494be965994562c00589ae0f842b9100 317 SUPERFAMILY SSF52440 3 123 5.47E-45 T 22-04-2016 IPR016185 Pre-ATP-grasp domain PP4_RS16395 02747338b9c08656dd5f5192a55d4344 260 Gene3D G3DSA:3.40.190.10 103 196 1.9E-18 T 22-04-2016 PP4_RS16395 02747338b9c08656dd5f5192a55d4344 260 Gene3D G3DSA:3.40.190.10 21 102 4.4E-5 T 22-04-2016 PP4_RS16395 02747338b9c08656dd5f5192a55d4344 260 TIGRFAM TIGR03431 PhnD: phosphonate ABC transporter, periplasmic phosphonate binding protein 1 252 1.4E-79 T 22-04-2016 IPR017797 Phosphonate ABC transporter, periplasmic substrate-binding protein GO:0015604|GO:0015716|GO:0043190 PP4_RS16395 02747338b9c08656dd5f5192a55d4344 260 TIGRFAM TIGR01098 3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein 1 218 1.1E-76 T 22-04-2016 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 PP4_RS16395 02747338b9c08656dd5f5192a55d4344 260 SUPERFAMILY SSF53850 21 211 6.18E-51 T 22-04-2016 PP4_RS16395 02747338b9c08656dd5f5192a55d4344 260 PANTHER PTHR35841 3 253 1.2E-38 T 22-04-2016 PP4_RS16395 02747338b9c08656dd5f5192a55d4344 260 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 3 242 7.2E-73 T 22-04-2016 PP4_RS26235 8d187a90924dda749bfc9d248d6b7bf8 269 ProSitePatterns PS01311 Prolipoprotein diacylglyceryl transferase signature. 138 150 - T 22-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 PP4_RS26235 8d187a90924dda749bfc9d248d6b7bf8 269 Hamap MF_01147 Prolipoprotein diacylglyceryl transferase [lgt]. 6 262 20.176 T 22-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 PP4_RS26235 8d187a90924dda749bfc9d248d6b7bf8 269 PANTHER PTHR30589 1 263 5.7E-112 T 22-04-2016 PP4_RS26235 8d187a90924dda749bfc9d248d6b7bf8 269 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 9 256 5.3E-81 T 22-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 PP4_RS26235 8d187a90924dda749bfc9d248d6b7bf8 269 PANTHER PTHR30589:SF0 1 263 5.7E-112 T 22-04-2016 PP4_RS26235 8d187a90924dda749bfc9d248d6b7bf8 269 TIGRFAM TIGR00544 lgt: prolipoprotein diacylglyceryl transferase 4 263 3.1E-88 T 22-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 PP4_RS26115 98222573cbdf6a5e11e73afb7def6fda 221 SUPERFAMILY SSF46689 4 73 4.31E-15 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS26115 98222573cbdf6a5e11e73afb7def6fda 221 Gene3D G3DSA:1.10.357.10 4 187 1.9E-27 T 22-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PP4_RS26115 98222573cbdf6a5e11e73afb7def6fda 221 PANTHER PTHR30055:SF30 2 203 5.8E-56 T 22-04-2016 PP4_RS26115 98222573cbdf6a5e11e73afb7def6fda 221 Pfam PF13972 Bacterial transcriptional repressor 60 203 1.2E-46 T 22-04-2016 IPR025722 Bacterial transcriptional repressor TetR PP4_RS26115 98222573cbdf6a5e11e73afb7def6fda 221 Pfam PF00440 Bacterial regulatory proteins, tetR family 11 54 1.1E-10 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS26115 98222573cbdf6a5e11e73afb7def6fda 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 11 24 8.9E-7 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS26115 98222573cbdf6a5e11e73afb7def6fda 221 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 32 55 8.9E-7 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS26115 98222573cbdf6a5e11e73afb7def6fda 221 PANTHER PTHR30055 2 203 5.8E-56 T 22-04-2016 PP4_RS16530 f6bbb94f39f85d86a4f76e2e1a16ad7f 157 Pfam PF13441 YMGG-like Gly-zipper 62 123 1.4E-9 T 22-04-2016 IPR027367 YMGG-like Gly-zipper PP4_RS20420 8057f95d1f41a4d325dacaa58cd6986c 329 ProSitePatterns PS00211 ABC transporters family signature. 134 148 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS20420 8057f95d1f41a4d325dacaa58cd6986c 329 PANTHER PTHR24220 290 300 6.0E-120 T 22-04-2016 PP4_RS20420 8057f95d1f41a4d325dacaa58cd6986c 329 PANTHER PTHR24220 5 273 6.0E-120 T 22-04-2016 PP4_RS20420 8057f95d1f41a4d325dacaa58cd6986c 329 SMART SM00382 28 211 2.8E-17 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS20420 8057f95d1f41a4d325dacaa58cd6986c 329 Pfam PF00005 ABC transporter 20 161 1.8E-36 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS20420 8057f95d1f41a4d325dacaa58cd6986c 329 Gene3D G3DSA:3.40.50.300 4 236 2.3E-84 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS20420 8057f95d1f41a4d325dacaa58cd6986c 329 PANTHER PTHR24220:SF150 290 300 6.0E-120 T 22-04-2016 PP4_RS20420 8057f95d1f41a4d325dacaa58cd6986c 329 PANTHER PTHR24220:SF150 5 273 6.0E-120 T 22-04-2016 PP4_RS20420 8057f95d1f41a4d325dacaa58cd6986c 329 Pfam PF08402 TOBE domain 257 325 1.4E-8 T 22-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 PP4_RS20420 8057f95d1f41a4d325dacaa58cd6986c 329 SUPERFAMILY SSF52540 4 240 3.0E-86 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS20420 8057f95d1f41a4d325dacaa58cd6986c 329 SUPERFAMILY SSF50331 256 325 2.61E-7 T 22-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal PP4_RS24535 f3efcb611bccb11616e3239d2d0ce05c 338 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 53 89 2.1E-7 T 22-04-2016 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 PP4_RS24535 f3efcb611bccb11616e3239d2d0ce05c 338 SUPERFAMILY SSF102114 66 336 3.53E-68 T 22-04-2016 PP4_RS24535 f3efcb611bccb11616e3239d2d0ce05c 338 SMART SM00729 100 306 5.1E-15 T 22-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 PP4_RS24535 f3efcb611bccb11616e3239d2d0ce05c 338 Pfam PF04055 Radical SAM superfamily 107 266 1.3E-13 T 22-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 PP4_RS24535 f3efcb611bccb11616e3239d2d0ce05c 338 Gene3D G3DSA:3.20.20.70 68 331 3.9E-71 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS24535 f3efcb611bccb11616e3239d2d0ce05c 338 PANTHER PTHR10949 27 337 2.7E-170 T 22-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 PP4_RS24535 f3efcb611bccb11616e3239d2d0ce05c 338 TIGRFAM TIGR00510 lipA: lipoyl synthase 48 332 7.5E-128 T 22-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 PP4_RS24535 f3efcb611bccb11616e3239d2d0ce05c 338 PIRSF PIRSF005963 15 338 6.5E-130 T 22-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 PP4_RS24535 f3efcb611bccb11616e3239d2d0ce05c 338 Hamap MF_00206 Lipoyl synthase [lipA]. 52 338 153.975 T 22-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 PP4_RS05280 5a7eae95ae6e498f7c688e3d12c66f71 323 PANTHER PTHR30578:SF0 8 313 1.2E-97 T 22-04-2016 IPR011303 Electron transport complex, subunit RnfD/RsxD GO:0016021|GO:0022900 PP4_RS05280 5a7eae95ae6e498f7c688e3d12c66f71 323 PANTHER PTHR30578 8 313 1.2E-97 T 22-04-2016 PP4_RS05280 5a7eae95ae6e498f7c688e3d12c66f71 323 Pfam PF03116 NQR2, RnfD, RnfE family 9 318 8.2E-89 T 22-04-2016 IPR004338 NADH-quinone reductase NQR2/RnfD GO:0006810|GO:0016020 PP4_RS05280 5a7eae95ae6e498f7c688e3d12c66f71 323 TIGRFAM TIGR01946 rnfD: electron transport complex, RnfABCDGE type, D subunit 9 313 1.2E-104 T 22-04-2016 IPR011303 Electron transport complex, subunit RnfD/RsxD GO:0016021|GO:0022900 PP4_RS05280 5a7eae95ae6e498f7c688e3d12c66f71 323 Hamap MF_00462 Electron transport complex subunit RsxD [rsxD]. 1 323 24.073 T 22-04-2016 IPR011303 Electron transport complex, subunit RnfD/RsxD GO:0016021|GO:0022900 PP4_RS00005 357414e37a0f5df7e22fe9d7a7473ce8 514 PANTHER PTHR30050:SF2 177 514 3.8E-231 T 22-04-2016 PP4_RS00005 357414e37a0f5df7e22fe9d7a7473ce8 514 PANTHER PTHR30050:SF2 1 102 3.8E-231 T 22-04-2016 PP4_RS00005 357414e37a0f5df7e22fe9d7a7473ce8 514 SMART SM00760 422 491 5.7E-44 T 22-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 PP4_RS00005 357414e37a0f5df7e22fe9d7a7473ce8 514 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 423 491 4.9E-32 T 22-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 PP4_RS00005 357414e37a0f5df7e22fe9d7a7473ce8 514 Gene3D G3DSA:1.10.8.60 345 412 2.5E-29 T 22-04-2016 PP4_RS00005 357414e37a0f5df7e22fe9d7a7473ce8 514 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 3 513 34.108 T 22-04-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 PP4_RS00005 357414e37a0f5df7e22fe9d7a7473ce8 514 Pfam PF00308 Bacterial dnaA protein 179 396 1.1E-100 T 22-04-2016 IPR013317 Chromosomal replication initiator protein DnaA PP4_RS00005 357414e37a0f5df7e22fe9d7a7473ce8 514 Gene3D G3DSA:3.40.50.300 168 343 2.0E-62 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS00005 357414e37a0f5df7e22fe9d7a7473ce8 514 SMART SM00382 211 416 8.0E-7 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS00005 357414e37a0f5df7e22fe9d7a7473ce8 514 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 6 512 1.1E-189 T 22-04-2016 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 PP4_RS00005 357414e37a0f5df7e22fe9d7a7473ce8 514 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 472 491 5.9E-53 T 22-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like PP4_RS00005 357414e37a0f5df7e22fe9d7a7473ce8 514 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 244 258 5.9E-53 T 22-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like PP4_RS00005 357414e37a0f5df7e22fe9d7a7473ce8 514 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 212 232 5.9E-53 T 22-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like PP4_RS00005 357414e37a0f5df7e22fe9d7a7473ce8 514 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 276 290 5.9E-53 T 22-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like PP4_RS00005 357414e37a0f5df7e22fe9d7a7473ce8 514 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 310 337 5.9E-53 T 22-04-2016 IPR020591 Chromosomal replication control, initiator DnaA-like PP4_RS00005 357414e37a0f5df7e22fe9d7a7473ce8 514 Gene3D G3DSA:1.10.1750.10 413 513 6.5E-41 T 22-04-2016 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 PP4_RS00005 357414e37a0f5df7e22fe9d7a7473ce8 514 SUPERFAMILY SSF52540 180 390 1.02E-43 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS00005 357414e37a0f5df7e22fe9d7a7473ce8 514 SUPERFAMILY SSF48295 410 512 8.37E-37 T 22-04-2016 IPR010921 Trp repressor/replication initiator GO:0043565 PP4_RS00005 357414e37a0f5df7e22fe9d7a7473ce8 514 PANTHER PTHR30050 177 514 3.8E-231 T 22-04-2016 PP4_RS00005 357414e37a0f5df7e22fe9d7a7473ce8 514 PANTHER PTHR30050 1 102 3.8E-231 T 22-04-2016 PP4_RS00005 357414e37a0f5df7e22fe9d7a7473ce8 514 Pfam PF11638 DnaA N-terminal domain 4 63 7.9E-21 T 22-04-2016 IPR024633 DnaA N-terminal domain PP4_RS00005 357414e37a0f5df7e22fe9d7a7473ce8 514 ProSitePatterns PS01008 DnaA protein signature. 472 491 - T 22-04-2016 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 PP4_RS02235 fc6df16114a88053b88b9b5580e7684a 332 Gene3D G3DSA:3.40.50.1820 80 133 4.3E-15 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS02235 fc6df16114a88053b88b9b5580e7684a 332 Gene3D G3DSA:3.40.50.1820 195 305 4.3E-15 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS02235 fc6df16114a88053b88b9b5580e7684a 332 Pfam PF12048 Protein of unknown function (DUF3530) 10 329 8.6E-102 T 22-04-2016 IPR022529 Protein of unknown function DUF3530 PP4_RS02235 fc6df16114a88053b88b9b5580e7684a 332 SUPERFAMILY SSF53474 195 270 2.51E-12 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS02235 fc6df16114a88053b88b9b5580e7684a 332 SUPERFAMILY SSF53474 68 150 2.51E-12 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS18150 6bd34cbb0ecd8b983efcdadf346a423a 368 Gene3D G3DSA:3.90.1150.10 252 358 1.6E-40 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS18150 6bd34cbb0ecd8b983efcdadf346a423a 368 PANTHER PTHR21152 5 365 5.0E-117 T 22-04-2016 PP4_RS18150 6bd34cbb0ecd8b983efcdadf346a423a 368 PIRSF PIRSF000524 1 367 1.7E-58 T 22-04-2016 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 PP4_RS18150 6bd34cbb0ecd8b983efcdadf346a423a 368 TIGRFAM TIGR02326 transamin_PhnW: 2-aminoethylphosphonate--pyruvate transaminase 3 361 1.1E-169 T 22-04-2016 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 PP4_RS18150 6bd34cbb0ecd8b983efcdadf346a423a 368 Hamap MF_01376 2-aminoethylphosphonate--pyruvate transaminase [phnW]. 1 368 210.201 T 22-04-2016 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 PP4_RS18150 6bd34cbb0ecd8b983efcdadf346a423a 368 Gene3D G3DSA:3.40.640.10 29 251 7.0E-47 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS18150 6bd34cbb0ecd8b983efcdadf346a423a 368 PANTHER PTHR21152:SF21 5 365 5.0E-117 T 22-04-2016 PP4_RS18150 6bd34cbb0ecd8b983efcdadf346a423a 368 Pfam PF00266 Aminotransferase class-V 34 301 3.1E-21 T 22-04-2016 IPR000192 Aminotransferase class V domain PP4_RS18150 6bd34cbb0ecd8b983efcdadf346a423a 368 TIGRFAM TIGR03301 PhnW-AepZ: 2-aminoethylphosphonate aminotransferase 6 359 1.2E-157 T 22-04-2016 IPR012703 2-aminoethylphosphonate--pyruvate transaminase GO:0019700|GO:0047304 KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832 PP4_RS18150 6bd34cbb0ecd8b983efcdadf346a423a 368 SUPERFAMILY SSF53383 5 363 5.7E-84 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS08690 0841b81959e3a2b5931731b0a9ea4f63 924 Gene3D G3DSA:3.30.1590.10 97 180 1.6E-42 T 22-04-2016 PP4_RS08690 0841b81959e3a2b5931731b0a9ea4f63 924 Gene3D G3DSA:3.30.1590.10 246 284 1.6E-42 T 22-04-2016 PP4_RS08690 0841b81959e3a2b5931731b0a9ea4f63 924 Gene3D G3DSA:1.10.150.200 406 470 6.0E-4 T 22-04-2016 PP4_RS08690 0841b81959e3a2b5931731b0a9ea4f63 924 Gene3D G3DSA:1.10.150.200 511 535 6.0E-4 T 22-04-2016 PP4_RS08690 0841b81959e3a2b5931731b0a9ea4f63 924 SMART SM00642 5 488 9.9E-5 T 22-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 PP4_RS08690 0841b81959e3a2b5931731b0a9ea4f63 924 Gene3D G3DSA:3.20.20.80 730 852 3.0E-67 T 22-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PP4_RS08690 0841b81959e3a2b5931731b0a9ea4f63 924 Gene3D G3DSA:3.20.20.80 573 613 3.0E-67 T 22-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PP4_RS08690 0841b81959e3a2b5931731b0a9ea4f63 924 Gene3D G3DSA:3.20.20.80 7 96 3.0E-67 T 22-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PP4_RS08690 0841b81959e3a2b5931731b0a9ea4f63 924 Gene3D G3DSA:3.20.20.80 300 385 3.0E-67 T 22-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PP4_RS08690 0841b81959e3a2b5931731b0a9ea4f63 924 PANTHER PTHR10357 726 920 1.3E-147 T 22-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 PP4_RS08690 0841b81959e3a2b5931731b0a9ea4f63 924 PANTHER PTHR10357 17 125 1.3E-147 T 22-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 PP4_RS08690 0841b81959e3a2b5931731b0a9ea4f63 924 PANTHER PTHR10357 252 417 1.3E-147 T 22-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 PP4_RS08690 0841b81959e3a2b5931731b0a9ea4f63 924 Pfam PF00128 Alpha amylase, catalytic domain 26 94 1.2E-12 T 22-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 PP4_RS08690 0841b81959e3a2b5931731b0a9ea4f63 924 SUPERFAMILY SSF51445 523 821 2.95E-126 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily PP4_RS08690 0841b81959e3a2b5931731b0a9ea4f63 924 SUPERFAMILY SSF51445 245 486 2.95E-126 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily PP4_RS08690 0841b81959e3a2b5931731b0a9ea4f63 924 SUPERFAMILY SSF51445 8 177 2.95E-126 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily PP4_RS08690 0841b81959e3a2b5931731b0a9ea4f63 924 Gene3D G3DSA:1.10.10.470 619 722 2.3E-27 T 22-04-2016 IPR013797 Maltooligosyl trehalose synthase, N-terminal MetaCyc: PWY-2661 PP4_RS08690 0841b81959e3a2b5931731b0a9ea4f63 924 PANTHER PTHR10357:SF166 726 920 1.3E-147 T 22-04-2016 PP4_RS08690 0841b81959e3a2b5931731b0a9ea4f63 924 PANTHER PTHR10357:SF166 17 125 1.3E-147 T 22-04-2016 PP4_RS08690 0841b81959e3a2b5931731b0a9ea4f63 924 PANTHER PTHR10357:SF166 252 417 1.3E-147 T 22-04-2016 PP4_RS08690 0841b81959e3a2b5931731b0a9ea4f63 924 TIGRFAM TIGR02401 trehalose_TreY: malto-oligosyltrehalose synthase 5 921 1.6E-276 T 22-04-2016 IPR012767 Malto-oligosyltrehalose synthase MetaCyc: PWY-2661 PP4_RS22530 87d885e8cededb35b508ee1d641a6edb 722 Gene3D G3DSA:1.20.1560.10 164 476 3.0E-52 T 22-04-2016 PP4_RS22530 87d885e8cededb35b508ee1d641a6edb 722 Pfam PF00005 ABC transporter 512 657 7.0E-28 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS22530 87d885e8cededb35b508ee1d641a6edb 722 SUPERFAMILY SSF52540 482 712 5.23E-64 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS22530 87d885e8cededb35b508ee1d641a6edb 722 SUPERFAMILY SSF90123 164 476 8.89E-52 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PP4_RS22530 87d885e8cededb35b508ee1d641a6edb 722 SMART SM00382 517 703 4.2E-15 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS22530 87d885e8cededb35b508ee1d641a6edb 722 PANTHER PTHR24221 146 707 4.0E-242 T 22-04-2016 PP4_RS22530 87d885e8cededb35b508ee1d641a6edb 722 PANTHER PTHR24221 87 112 4.0E-242 T 22-04-2016 PP4_RS22530 87d885e8cededb35b508ee1d641a6edb 722 Gene3D G3DSA:3.40.50.300 493 716 4.5E-62 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS22530 87d885e8cededb35b508ee1d641a6edb 722 ProSitePatterns PS00211 ABC transporters family signature. 629 643 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS22530 87d885e8cededb35b508ee1d641a6edb 722 TIGRFAM TIGR03375 type_I_sec_LssB: type I secretion system ATPase 28 720 4.3E-253 T 22-04-2016 IPR017750 ATPase, type I secretion system PP4_RS22530 87d885e8cededb35b508ee1d641a6edb 722 Pfam PF00664 ABC transporter transmembrane region 180 444 3.2E-25 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PP4_RS22530 87d885e8cededb35b508ee1d641a6edb 722 Gene3D G3DSA:3.90.70.10 28 141 4.1E-14 T 22-04-2016 PP4_RS22530 87d885e8cededb35b508ee1d641a6edb 722 PANTHER PTHR24221:SF260 146 707 4.0E-242 T 22-04-2016 PP4_RS22530 87d885e8cededb35b508ee1d641a6edb 722 PANTHER PTHR24221:SF260 87 112 4.0E-242 T 22-04-2016 PP4_RS09760 b2b200e6d21108d17505fcdd7cb7d66d 100 PRINTS PR01727 Prokaryotic integration host factor signature 77 91 3.6E-17 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PP4_RS09760 b2b200e6d21108d17505fcdd7cb7d66d 100 PRINTS PR01727 Prokaryotic integration host factor signature 43 58 3.6E-17 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PP4_RS09760 b2b200e6d21108d17505fcdd7cb7d66d 100 PRINTS PR01727 Prokaryotic integration host factor signature 61 74 3.6E-17 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PP4_RS09760 b2b200e6d21108d17505fcdd7cb7d66d 100 TIGRFAM TIGR00987 himA: integration host factor, alpha subunit 3 97 5.0E-54 T 22-04-2016 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355|GO:0006417 PP4_RS09760 b2b200e6d21108d17505fcdd7cb7d66d 100 PANTHER PTHR33175:SF2 3 95 5.1E-54 T 22-04-2016 PP4_RS09760 b2b200e6d21108d17505fcdd7cb7d66d 100 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 49 68 - T 22-04-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 PP4_RS09760 b2b200e6d21108d17505fcdd7cb7d66d 100 SUPERFAMILY SSF47729 4 93 4.42E-31 T 22-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 PP4_RS09760 b2b200e6d21108d17505fcdd7cb7d66d 100 PANTHER PTHR33175 3 95 5.1E-54 T 22-04-2016 PP4_RS09760 b2b200e6d21108d17505fcdd7cb7d66d 100 Gene3D G3DSA:4.10.520.10 4 93 9.7E-36 T 22-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 PP4_RS09760 b2b200e6d21108d17505fcdd7cb7d66d 100 Hamap MF_00380 Integration host factor subunit alpha [ihfA]. 2 98 30.604 T 22-04-2016 IPR005684 Integration host factor, alpha subunit GO:0003677|GO:0006310|GO:0006355|GO:0006417 PP4_RS09760 b2b200e6d21108d17505fcdd7cb7d66d 100 SMART SM00411 4 93 2.1E-40 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PP4_RS09760 b2b200e6d21108d17505fcdd7cb7d66d 100 Pfam PF00216 Bacterial DNA-binding protein 4 92 3.1E-31 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PP4_RS12285 776317f33781f9dc3cf2b2736fdba42b 256 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 253 7.9E-55 T 22-04-2016 PP4_RS12285 776317f33781f9dc3cf2b2736fdba42b 256 TIGRFAM TIGR01963 PHB_DH: 3-hydroxybutyrate dehydrogenase 6 256 4.9E-101 T 22-04-2016 IPR011294 3-hydroxybutyrate dehydrogenase GO:0003858|GO:0055114 PP4_RS12285 776317f33781f9dc3cf2b2736fdba42b 256 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 143 0.0041 T 22-04-2016 PP4_RS12285 776317f33781f9dc3cf2b2736fdba42b 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 7.4E-13 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS12285 776317f33781f9dc3cf2b2736fdba42b 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 79 90 7.4E-13 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS12285 776317f33781f9dc3cf2b2736fdba42b 256 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 152 171 7.4E-13 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS12285 776317f33781f9dc3cf2b2736fdba42b 256 Gene3D G3DSA:3.40.50.720 2 255 9.8E-79 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS12285 776317f33781f9dc3cf2b2736fdba42b 256 PANTHER PTHR24322 10 136 1.7E-53 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS12285 776317f33781f9dc3cf2b2736fdba42b 256 PANTHER PTHR24322 152 184 1.7E-53 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS12285 776317f33781f9dc3cf2b2736fdba42b 256 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 139 167 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PP4_RS12285 776317f33781f9dc3cf2b2736fdba42b 256 PANTHER PTHR24322:SF330 10 136 1.7E-53 T 22-04-2016 PP4_RS12285 776317f33781f9dc3cf2b2736fdba42b 256 PANTHER PTHR24322:SF330 152 184 1.7E-53 T 22-04-2016 PP4_RS12285 776317f33781f9dc3cf2b2736fdba42b 256 SUPERFAMILY SSF51735 1 255 8.41E-75 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS12285 776317f33781f9dc3cf2b2736fdba42b 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 6.4E-37 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS12285 776317f33781f9dc3cf2b2736fdba42b 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 6.4E-37 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS12285 776317f33781f9dc3cf2b2736fdba42b 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 6.4E-37 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS12285 776317f33781f9dc3cf2b2736fdba42b 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 6.4E-37 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS12285 776317f33781f9dc3cf2b2736fdba42b 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 6.4E-37 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS12285 776317f33781f9dc3cf2b2736fdba42b 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 6.4E-37 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 SUPERFAMILY SSF56801 504 1019 7.59E-137 T 22-04-2016 PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 SUPERFAMILY SSF52777 232 482 1.89E-55 T 22-04-2016 PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 SUPERFAMILY SSF47336 998 1068 4.84E-18 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 Pfam PF00501 AMP-binding enzyme 2012 2408 1.5E-97 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 Pfam PF00501 AMP-binding enzyme 520 899 7.2E-82 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 Pfam PF13193 AMP-binding enzyme C-terminal domain 2416 2493 2.0E-12 T 22-04-2016 IPR025110 AMP-binding enzyme C-terminal domain PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 Pfam PF13193 AMP-binding enzyme C-terminal domain 908 982 2.3E-8 T 22-04-2016 IPR025110 AMP-binding enzyme C-terminal domain PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 SUPERFAMILY SSF52777 52 226 4.22E-53 T 22-04-2016 PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 SUPERFAMILY SSF52777 1272 1522 4.45E-44 T 22-04-2016 PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 Pfam PF00550 Phosphopantetheine attachment site 1007 1068 4.9E-14 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 Pfam PF00550 Phosphopantetheine attachment site 2520 2579 5.0E-12 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 Gene3D G3DSA:3.40.50.980 2162 2319 4.0E-46 T 22-04-2016 PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 Gene3D G3DSA:3.40.50.980 653 813 3.9E-37 T 22-04-2016 PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 Pfam PF13745 HxxPF-repeated domain 367 459 3.0E-26 T 22-04-2016 PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 SUPERFAMILY SSF52777 1731 1974 9.78E-52 T 22-04-2016 PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 ProSitePatterns PS00455 Putative AMP-binding domain signature. 2152 2163 - T 22-04-2016 IPR020845 AMP-binding, conserved site PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 Gene3D G3DSA:1.10.1200.10 1010 1075 4.2E-27 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 Gene3D G3DSA:1.10.1200.10 2523 2578 1.3E-24 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 SUPERFAMILY SSF47336 2511 2578 2.49E-17 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 SUPERFAMILY SSF52777 1089 1284 7.45E-40 T 22-04-2016 PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 ProSitePatterns PS00012 Phosphopantetheine attachment site. 1030 1045 - T 22-04-2016 IPR006162 Phosphopantetheine attachment site PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 Pfam PF00668 Condensation domain 1090 1386 1.7E-62 T 22-04-2016 IPR001242 Condensation domain PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 Pfam PF00668 Condensation domain 1554 1843 1.3E-59 T 22-04-2016 IPR001242 Condensation domain PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 Pfam PF00668 Condensation domain 50 345 9.9E-74 T 22-04-2016 IPR001242 Condensation domain PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 PANTHER PTHR24095:SF173 1531 2493 0.0 T 22-04-2016 PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 PANTHER PTHR24095:SF173 50 1061 0.0 T 22-04-2016 PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 PANTHER PTHR24095:SF173 1501 1514 0.0 T 22-04-2016 PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 SMART SM00823 Phosphopantetheine attachment site 2519 2568 0.21 T 22-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 SMART SM00823 Phosphopantetheine attachment site 1006 1074 6.1E-4 T 22-04-2016 IPR020806 Polyketide synthase, phosphopantetheine-binding domain GO:0031177 PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 TIGRFAM TIGR01720 NRPS-para261: non-ribosomal peptide synthase domain TIGR01720 1390 1546 3.3E-47 T 22-04-2016 IPR010060 Non-ribosomal peptide synthase PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 PANTHER PTHR24095 1531 2493 0.0 T 22-04-2016 PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 PANTHER PTHR24095 50 1061 0.0 T 22-04-2016 PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 PANTHER PTHR24095 1501 1514 0.0 T 22-04-2016 PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 Gene3D G3DSA:3.40.50.980 503 652 6.1E-38 T 22-04-2016 PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 Gene3D G3DSA:3.40.50.980 2004 2161 1.0E-54 T 22-04-2016 PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 ProSitePatterns PS00455 Putative AMP-binding domain signature. 644 655 - T 22-04-2016 IPR020845 AMP-binding, conserved site PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 SUPERFAMILY SSF52777 1559 1729 7.0E-45 T 22-04-2016 PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 SUPERFAMILY SSF56801 1971 2532 4.19E-166 T 22-04-2016 PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 Gene3D G3DSA:3.30.300.30 2403 2522 6.0E-44 T 22-04-2016 PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 Gene3D G3DSA:3.30.300.30 894 1009 6.5E-36 T 22-04-2016 PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 2032 2432 8.0E-137 T 22-04-2016 IPR010071 Amino acid adenylation domain PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 528 923 3.9E-113 T 22-04-2016 IPR010071 Amino acid adenylation domain PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 Gene3D G3DSA:2.30.38.10 2320 2397 2.0E-23 T 22-04-2016 PP4_RS06335 ac7a61d2010001df9a64e09eefb29704 2579 Gene3D G3DSA:2.30.38.10 814 889 9.0E-22 T 22-04-2016 PP4_RS05265 dbd0b48bd79c6522cc0938a57187ec80 212 SMART SM00525 186 206 9.7E-5 T 22-04-2016 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: REACT_216 PP4_RS05265 dbd0b48bd79c6522cc0938a57187ec80 212 PANTHER PTHR10359:SF18 1 212 1.2E-91 T 22-04-2016 PP4_RS05265 dbd0b48bd79c6522cc0938a57187ec80 212 SUPERFAMILY SSF48150 4 208 4.71E-74 T 22-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 PP4_RS05265 dbd0b48bd79c6522cc0938a57187ec80 212 TIGRFAM TIGR01083 nth: endonuclease III 5 194 1.3E-85 T 22-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 PP4_RS05265 dbd0b48bd79c6522cc0938a57187ec80 212 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 187 203 - T 22-04-2016 IPR004035 Endonuclease III, iron-sulphur binding site PP4_RS05265 dbd0b48bd79c6522cc0938a57187ec80 212 Hamap MF_00942 Endonuclease III [nth]. 1 209 37.741 T 22-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 PP4_RS05265 dbd0b48bd79c6522cc0938a57187ec80 212 Gene3D G3DSA:1.10.1670.10 123 208 1.0E-36 T 22-04-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal PP4_RS05265 dbd0b48bd79c6522cc0938a57187ec80 212 Pfam PF00633 Helix-hairpin-helix motif 100 127 1.8E-8 T 22-04-2016 IPR000445 Helix-hairpin-helix motif GO:0003677 PP4_RS05265 dbd0b48bd79c6522cc0938a57187ec80 212 PIRSF PIRSF001435 1 212 3.9E-54 T 22-04-2016 IPR005759 Endonuclease III GO:0003906|GO:0006284 PP4_RS05265 dbd0b48bd79c6522cc0938a57187ec80 212 SMART SM00478 38 185 3.1E-59 T 22-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 PP4_RS05265 dbd0b48bd79c6522cc0938a57187ec80 212 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 34 168 2.6E-19 T 22-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 PP4_RS05265 dbd0b48bd79c6522cc0938a57187ec80 212 PANTHER PTHR10359 1 212 1.2E-91 T 22-04-2016 PP4_RS05265 dbd0b48bd79c6522cc0938a57187ec80 212 Gene3D G3DSA:1.10.340.30 23 122 1.2E-35 T 22-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 PP4_RS14790 64e3ae050b67bdf2359ae741d795a9a4 181 Gene3D G3DSA:2.60.120.10 69 181 2.9E-20 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS14790 64e3ae050b67bdf2359ae741d795a9a4 181 SMART SM00530 6 61 1.1E-14 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS14790 64e3ae050b67bdf2359ae741d795a9a4 181 SUPERFAMILY SSF47413 2 66 1.66E-16 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS14790 64e3ae050b67bdf2359ae741d795a9a4 181 PANTHER PTHR10245:SF42 1 181 1.9E-65 T 22-04-2016 PP4_RS14790 64e3ae050b67bdf2359ae741d795a9a4 181 PANTHER PTHR10245 1 181 1.9E-65 T 22-04-2016 PP4_RS14790 64e3ae050b67bdf2359ae741d795a9a4 181 Pfam PF01381 Helix-turn-helix 7 61 8.6E-14 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS14790 64e3ae050b67bdf2359ae741d795a9a4 181 Gene3D G3DSA:1.10.260.40 1 67 6.2E-23 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS14790 64e3ae050b67bdf2359ae741d795a9a4 181 Pfam PF07883 Cupin domain 107 174 1.4E-16 T 22-04-2016 IPR013096 Cupin 2, conserved barrel PP4_RS14790 64e3ae050b67bdf2359ae741d795a9a4 181 SUPERFAMILY SSF51182 46 181 3.91E-29 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS21705 d97eb95dc25d5e31ff78dd320ac3fbb9 862 Gene3D G3DSA:2.170.130.10 144 261 1.8E-39 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS21705 d97eb95dc25d5e31ff78dd320ac3fbb9 862 PANTHER PTHR32552 583 862 1.4E-204 T 22-04-2016 PP4_RS21705 d97eb95dc25d5e31ff78dd320ac3fbb9 862 PANTHER PTHR32552 128 562 1.4E-204 T 22-04-2016 PP4_RS21705 d97eb95dc25d5e31ff78dd320ac3fbb9 862 Pfam PF07715 TonB-dependent Receptor Plug Domain 146 256 2.5E-28 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS21705 d97eb95dc25d5e31ff78dd320ac3fbb9 862 SMART SM00965 73 124 1.9E-13 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS21705 d97eb95dc25d5e31ff78dd320ac3fbb9 862 TIGRFAM TIGR01785 TonB-hemin: TonB-dependent heme/hemoglobin receptor family protein 132 858 3.1E-126 T 22-04-2016 IPR011276 TonB-dependent haem/haemoglobin receptor GO:0004872|GO:0005215|GO:0006810|GO:0019867 PP4_RS21705 d97eb95dc25d5e31ff78dd320ac3fbb9 862 TIGRFAM TIGR01786 TonB-hemlactrns: TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein 133 859 6.2E-162 T 22-04-2016 IPR010949 TonB-dependent haemoglobin/transferrin/lactoferrin receptor GO:0004872|GO:0005215|GO:0006810|GO:0019867 PP4_RS21705 d97eb95dc25d5e31ff78dd320ac3fbb9 862 PANTHER PTHR32552:SF18 583 862 1.4E-204 T 22-04-2016 PP4_RS21705 d97eb95dc25d5e31ff78dd320ac3fbb9 862 PANTHER PTHR32552:SF18 128 562 1.4E-204 T 22-04-2016 PP4_RS21705 d97eb95dc25d5e31ff78dd320ac3fbb9 862 Gene3D G3DSA:2.40.170.20 262 859 4.6E-113 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS21705 d97eb95dc25d5e31ff78dd320ac3fbb9 862 Pfam PF07660 Secretin and TonB N terminus short domain 74 124 1.1E-9 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS21705 d97eb95dc25d5e31ff78dd320ac3fbb9 862 SUPERFAMILY SSF56935 517 555 6.72E-126 T 22-04-2016 PP4_RS21705 d97eb95dc25d5e31ff78dd320ac3fbb9 862 SUPERFAMILY SSF56935 134 489 6.72E-126 T 22-04-2016 PP4_RS21705 d97eb95dc25d5e31ff78dd320ac3fbb9 862 SUPERFAMILY SSF56935 583 858 6.72E-126 T 22-04-2016 PP4_RS21705 d97eb95dc25d5e31ff78dd320ac3fbb9 862 Pfam PF00593 TonB dependent receptor 590 858 5.2E-39 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS11555 8101da397916741b22b459d506c9bedd 589 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 164 273 8.5E-17 T 22-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 PP4_RS11555 8101da397916741b22b459d506c9bedd 589 SUPERFAMILY SSF56645 38 281 1.18E-54 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 PP4_RS11555 8101da397916741b22b459d506c9bedd 589 Pfam PF12806 Acetyl-CoA dehydrogenase C-terminal like 468 583 2.5E-26 T 22-04-2016 IPR025878 Acetyl-CoA dehydrogenase-like C-terminal domain PP4_RS11555 8101da397916741b22b459d506c9bedd 589 Gene3D G3DSA:1.10.540.10 38 160 1.4E-13 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS11555 8101da397916741b22b459d506c9bedd 589 PANTHER PTHR10909 1 477 1.9E-256 T 22-04-2016 PP4_RS11555 8101da397916741b22b459d506c9bedd 589 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 39 158 2.3E-10 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS11555 8101da397916741b22b459d506c9bedd 589 PANTHER PTHR10909:SF296 1 477 1.9E-256 T 22-04-2016 PP4_RS11555 8101da397916741b22b459d506c9bedd 589 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 283 452 2.2E-18 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS11555 8101da397916741b22b459d506c9bedd 589 SUPERFAMILY SSF47203 289 473 6.44E-46 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS11555 8101da397916741b22b459d506c9bedd 589 Gene3D G3DSA:2.40.110.10 162 269 1.2E-26 T 22-04-2016 PP4_RS11555 8101da397916741b22b459d506c9bedd 589 Gene3D G3DSA:1.20.140.10 270 463 3.1E-50 T 22-04-2016 PP4_RS11555 8101da397916741b22b459d506c9bedd 589 Pfam PF12418 Acyl-CoA dehydrogenase N terminal 3 33 2.6E-12 T 22-04-2016 IPR020953 Acyl-CoA dehydrogenase, N-terminal, bacteria PP4_RS06125 4ee6f219f115c1b5ee0745b9d9c7a612 260 PANTHER PTHR11019 153 260 8.5E-33 T 22-04-2016 PP4_RS06125 4ee6f219f115c1b5ee0745b9d9c7a612 260 Gene3D G3DSA:1.10.10.60 151 208 1.8E-10 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS06125 4ee6f219f115c1b5ee0745b9d9c7a612 260 SMART SM00342 170 252 4.6E-26 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS06125 4ee6f219f115c1b5ee0745b9d9c7a612 260 SUPERFAMILY SSF46689 207 254 4.93E-14 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS06125 4ee6f219f115c1b5ee0745b9d9c7a612 260 Gene3D G3DSA:3.30.450.20 33 142 1.2E-11 T 22-04-2016 PP4_RS06125 4ee6f219f115c1b5ee0745b9d9c7a612 260 SUPERFAMILY SSF46689 153 203 2.33E-6 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS06125 4ee6f219f115c1b5ee0745b9d9c7a612 260 Pfam PF12833 Helix-turn-helix domain 177 253 2.2E-24 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS06125 4ee6f219f115c1b5ee0745b9d9c7a612 260 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 207 248 - T 22-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PP4_RS06125 4ee6f219f115c1b5ee0745b9d9c7a612 260 SUPERFAMILY SSF55785 20 142 1.55E-10 T 22-04-2016 IPR000014 PAS domain PP4_RS06125 4ee6f219f115c1b5ee0745b9d9c7a612 260 Gene3D G3DSA:1.10.10.60 209 254 1.4E-18 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS06125 4ee6f219f115c1b5ee0745b9d9c7a612 260 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 221 236 1.2E-6 T 22-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PP4_RS06125 4ee6f219f115c1b5ee0745b9d9c7a612 260 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 236 252 1.2E-6 T 22-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PP4_RS06125 4ee6f219f115c1b5ee0745b9d9c7a612 260 Pfam PF08448 PAS fold 36 145 5.3E-21 T 22-04-2016 IPR013656 PAS fold-4 PP4_RS06125 4ee6f219f115c1b5ee0745b9d9c7a612 260 PANTHER PTHR11019:SF113 153 260 8.5E-33 T 22-04-2016 PP4_RS13350 c8506a4c092f96c2ffa7c5fcc7035d5a 238 PANTHER PTHR33254:SF5 4 234 2.6E-81 T 22-04-2016 PP4_RS13350 c8506a4c092f96c2ffa7c5fcc7035d5a 238 TIGRFAM TIGR02798 ligK_PcmE: 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase 9 230 4.0E-104 T 22-04-2016 IPR014165 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase KEGG: 00362+4.1.3.17|KEGG: 00660+4.1.3.17|MetaCyc: PWY-7701 PP4_RS13350 c8506a4c092f96c2ffa7c5fcc7035d5a 238 Gene3D G3DSA:3.50.30.40 29 188 4.7E-47 T 22-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein PP4_RS13350 c8506a4c092f96c2ffa7c5fcc7035d5a 238 Pfam PF03737 Demethylmenaquinone methyltransferase 35 179 3.5E-38 T 22-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein PP4_RS13350 c8506a4c092f96c2ffa7c5fcc7035d5a 238 PANTHER PTHR33254 4 234 2.6E-81 T 22-04-2016 PP4_RS13350 c8506a4c092f96c2ffa7c5fcc7035d5a 238 SUPERFAMILY SSF89562 29 190 9.81E-47 T 22-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein PP4_RS04615 1c06fe875cf4ad0f1c60652681623806 290 PANTHER PTHR23088 1 287 9.3E-78 T 22-04-2016 PP4_RS04615 1c06fe875cf4ad0f1c60652681623806 290 Pfam PF00795 Carbon-nitrogen hydrolase 3 214 5.6E-22 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PP4_RS04615 1c06fe875cf4ad0f1c60652681623806 290 Gene3D G3DSA:3.60.110.10 1 281 5.1E-53 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PP4_RS04615 1c06fe875cf4ad0f1c60652681623806 290 SUPERFAMILY SSF56317 2 281 1.07E-52 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PP4_RS04615 1c06fe875cf4ad0f1c60652681623806 290 PANTHER PTHR23088:SF12 1 287 9.3E-78 T 22-04-2016 PP4_RS19480 edff594342058e512484a1e2cdf329d1 210 PANTHER PTHR10344 3 210 1.8E-69 T 22-04-2016 PP4_RS19480 edff594342058e512484a1e2cdf329d1 210 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 2 197 3.5E-54 T 22-04-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 PP4_RS19480 edff594342058e512484a1e2cdf329d1 210 Hamap MF_00165 Thymidylate kinase [tmk]. 4 205 31.177 T 22-04-2016 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 PP4_RS19480 edff594342058e512484a1e2cdf329d1 210 SUPERFAMILY SSF52540 3 207 1.29E-55 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS19480 edff594342058e512484a1e2cdf329d1 210 Gene3D G3DSA:3.40.50.300 3 205 5.2E-74 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS19480 edff594342058e512484a1e2cdf329d1 210 Pfam PF02223 Thymidylate kinase 8 197 1.4E-50 T 22-04-2016 PP4_RS04225 6df41a73bc08ffa1457477b617261284 403 SUPERFAMILY SSF81342 6 278 9.1E-97 T 22-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 PP4_RS04225 6df41a73bc08ffa1457477b617261284 403 PANTHER PTHR19271:SF9 1 401 1.5E-265 T 22-04-2016 PP4_RS04225 6df41a73bc08ffa1457477b617261284 403 Pfam PF00032 Cytochrome b(C-terminal)/b6/petD 277 379 3.2E-43 T 22-04-2016 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 PP4_RS04225 6df41a73bc08ffa1457477b617261284 403 SUPERFAMILY SSF81648 281 396 8.72E-34 T 22-04-2016 IPR005798 Cytochrome b/b6, C-terminal GO:0009055|GO:0016020|GO:0016491 PP4_RS04225 6df41a73bc08ffa1457477b617261284 403 PIRSF PIRSF038885 1 403 1.1E-161 T 22-04-2016 IPR030689 Cytochrome b GO:0006122|GO:0008121|GO:0009055|GO:0045275 PP4_RS04225 6df41a73bc08ffa1457477b617261284 403 Pfam PF00033 Cytochrome b/b6/petB 24 211 1.2E-66 T 22-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 PP4_RS04225 6df41a73bc08ffa1457477b617261284 403 PANTHER PTHR19271 1 401 1.5E-265 T 22-04-2016 PP4_RS04225 6df41a73bc08ffa1457477b617261284 403 Gene3D G3DSA:1.20.810.10 5 399 2.1E-163 T 22-04-2016 IPR027387 Cytochrome b/b6-like domain PP4_RS04405 b9da1d3d6375b5df17841506a82f45fa 414 Pfam PF07690 Major Facilitator Superfamily 21 335 2.0E-35 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS04405 b9da1d3d6375b5df17841506a82f45fa 414 SUPERFAMILY SSF103473 13 402 4.32E-51 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS04405 b9da1d3d6375b5df17841506a82f45fa 414 PANTHER PTHR23502:SF43 11 368 2.2E-96 T 22-04-2016 PP4_RS04405 b9da1d3d6375b5df17841506a82f45fa 414 PANTHER PTHR23502 11 368 2.2E-96 T 22-04-2016 PP4_RS04405 b9da1d3d6375b5df17841506a82f45fa 414 Gene3D G3DSA:1.20.1250.20 19 198 1.5E-29 T 22-04-2016 PP4_RS04405 b9da1d3d6375b5df17841506a82f45fa 414 Gene3D G3DSA:1.20.1250.20 223 401 2.1E-4 T 22-04-2016 PP4_RS04405 b9da1d3d6375b5df17841506a82f45fa 414 ProSitePatterns PS00216 Sugar transport proteins signature 1. 69 85 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PP4_RS11315 6b0dc71e839cbbe1bd8b84cc097edfec 269 Gene3D G3DSA:3.40.50.880 27 262 6.5E-47 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS11315 6b0dc71e839cbbe1bd8b84cc097edfec 269 SUPERFAMILY SSF52317 35 258 5.13E-39 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS11315 6b0dc71e839cbbe1bd8b84cc097edfec 269 Pfam PF07722 Peptidase C26 16 234 3.8E-66 T 22-04-2016 IPR011697 Peptidase C26 GO:0006541|GO:0016787 PP4_RS11315 6b0dc71e839cbbe1bd8b84cc097edfec 269 PANTHER PTHR11922 50 80 3.0E-48 T 22-04-2016 PP4_RS11315 6b0dc71e839cbbe1bd8b84cc097edfec 269 PANTHER PTHR11922 96 257 3.0E-48 T 22-04-2016 PP4_RS11315 6b0dc71e839cbbe1bd8b84cc097edfec 269 PANTHER PTHR11922:SF18 50 80 3.0E-48 T 22-04-2016 PP4_RS11315 6b0dc71e839cbbe1bd8b84cc097edfec 269 PANTHER PTHR11922:SF18 96 257 3.0E-48 T 22-04-2016 PP4_RS23420 97effc399368171bc232e8ace4e4829d 512 PANTHER PTHR11206 217 442 1.0E-95 T 22-04-2016 PP4_RS23420 97effc399368171bc232e8ace4e4829d 512 PANTHER PTHR11206 70 82 1.0E-95 T 22-04-2016 PP4_RS23420 97effc399368171bc232e8ace4e4829d 512 PANTHER PTHR11206 469 482 1.0E-95 T 22-04-2016 PP4_RS23420 97effc399368171bc232e8ace4e4829d 512 PIRSF PIRSF002869 1 512 8.5E-175 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ PP4_RS23420 97effc399368171bc232e8ace4e4829d 512 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 2 501 3.5E-162 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ PP4_RS23420 97effc399368171bc232e8ace4e4829d 512 Pfam PF03023 MviN-like protein 28 477 3.9E-154 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ PP4_RS23420 97effc399368171bc232e8ace4e4829d 512 PRINTS PR01806 Virulence factor MviN signature 52 68 9.9E-86 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ PP4_RS23420 97effc399368171bc232e8ace4e4829d 512 PRINTS PR01806 Virulence factor MviN signature 357 376 9.9E-86 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ PP4_RS23420 97effc399368171bc232e8ace4e4829d 512 PRINTS PR01806 Virulence factor MviN signature 33 52 9.9E-86 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ PP4_RS23420 97effc399368171bc232e8ace4e4829d 512 PRINTS PR01806 Virulence factor MviN signature 409 426 9.9E-86 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ PP4_RS23420 97effc399368171bc232e8ace4e4829d 512 PRINTS PR01806 Virulence factor MviN signature 133 157 9.9E-86 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ PP4_RS23420 97effc399368171bc232e8ace4e4829d 512 PRINTS PR01806 Virulence factor MviN signature 259 285 9.9E-86 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ PP4_RS23420 97effc399368171bc232e8ace4e4829d 512 PRINTS PR01806 Virulence factor MviN signature 157 178 9.9E-86 T 22-04-2016 IPR004268 Peptidoglycan biosynthesis protein MurJ PP4_RS23420 97effc399368171bc232e8ace4e4829d 512 PANTHER PTHR11206:SF90 217 442 1.0E-95 T 22-04-2016 PP4_RS23420 97effc399368171bc232e8ace4e4829d 512 PANTHER PTHR11206:SF90 70 82 1.0E-95 T 22-04-2016 PP4_RS23420 97effc399368171bc232e8ace4e4829d 512 PANTHER PTHR11206:SF90 469 482 1.0E-95 T 22-04-2016 PP4_RS24790 54f1209af138e93abe2224a62050d6d6 317 Hamap MF_01154 Curved DNA-binding protein [cbpA]. 1 317 56.771 T 22-04-2016 IPR023859 DNA-binding protein, curved-DNA PP4_RS24790 54f1209af138e93abe2224a62050d6d6 317 Gene3D G3DSA:1.10.287.110 2 109 1.7E-32 T 22-04-2016 IPR001623 DnaJ domain PP4_RS24790 54f1209af138e93abe2224a62050d6d6 317 SUPERFAMILY SSF46565 1 108 4.45E-31 T 22-04-2016 IPR001623 DnaJ domain PP4_RS24790 54f1209af138e93abe2224a62050d6d6 317 PANTHER PTHR24078:SF190 4 305 2.2E-81 T 22-04-2016 PP4_RS24790 54f1209af138e93abe2224a62050d6d6 317 SMART SM00271 4 61 6.6E-27 T 22-04-2016 IPR001623 DnaJ domain PP4_RS24790 54f1209af138e93abe2224a62050d6d6 317 SUPERFAMILY SSF49493 216 300 1.22E-18 T 22-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 PP4_RS24790 54f1209af138e93abe2224a62050d6d6 317 Pfam PF00226 DnaJ domain 5 66 6.2E-24 T 22-04-2016 IPR001623 DnaJ domain PP4_RS24790 54f1209af138e93abe2224a62050d6d6 317 ProSitePatterns PS00636 Nt-dnaJ domain signature. 46 65 - T 22-04-2016 IPR018253 DnaJ domain, conserved site PP4_RS24790 54f1209af138e93abe2224a62050d6d6 317 PANTHER PTHR24078 4 305 2.2E-81 T 22-04-2016 PP4_RS24790 54f1209af138e93abe2224a62050d6d6 317 Gene3D G3DSA:2.60.260.20 213 289 4.9E-19 T 22-04-2016 PP4_RS24790 54f1209af138e93abe2224a62050d6d6 317 PRINTS PR00625 DnaJ domain signature 61 80 3.0E-21 T 22-04-2016 IPR001623 DnaJ domain PP4_RS24790 54f1209af138e93abe2224a62050d6d6 317 PRINTS PR00625 DnaJ domain signature 25 40 3.0E-21 T 22-04-2016 IPR001623 DnaJ domain PP4_RS24790 54f1209af138e93abe2224a62050d6d6 317 PRINTS PR00625 DnaJ domain signature 7 25 3.0E-21 T 22-04-2016 IPR001623 DnaJ domain PP4_RS24790 54f1209af138e93abe2224a62050d6d6 317 PRINTS PR00625 DnaJ domain signature 41 61 3.0E-21 T 22-04-2016 IPR001623 DnaJ domain PP4_RS24790 54f1209af138e93abe2224a62050d6d6 317 Gene3D G3DSA:2.60.260.20 110 210 5.7E-16 T 22-04-2016 PP4_RS24790 54f1209af138e93abe2224a62050d6d6 317 SUPERFAMILY SSF49493 127 224 6.8E-15 T 22-04-2016 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 PP4_RS24790 54f1209af138e93abe2224a62050d6d6 317 Pfam PF01556 DnaJ C terminal domain 132 289 1.2E-36 T 22-04-2016 IPR002939 Chaperone DnaJ, C-terminal PP4_RS01190 550a1eee5c1da2e633ac1e14d290e4a6 425 Gene3D G3DSA:3.90.1150.10 304 425 1.1E-42 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS01190 550a1eee5c1da2e633ac1e14d290e4a6 425 Pfam PF00202 Aminotransferase class-III 18 420 9.9E-134 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS01190 550a1eee5c1da2e633ac1e14d290e4a6 425 SUPERFAMILY SSF53383 22 424 7.93E-134 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS01190 550a1eee5c1da2e633ac1e14d290e4a6 425 PANTHER PTHR11986:SF70 1 424 6.8E-286 T 22-04-2016 PP4_RS01190 550a1eee5c1da2e633ac1e14d290e4a6 425 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 237 274 - T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS01190 550a1eee5c1da2e633ac1e14d290e4a6 425 TIGRFAM TIGR00700 GABAtrnsam: 4-aminobutyrate transaminase 10 421 1.0E-164 T 22-04-2016 IPR004632 4-aminobutyrate aminotransferase, bacterial GO:0003867|GO:0009448 PP4_RS01190 550a1eee5c1da2e633ac1e14d290e4a6 425 PANTHER PTHR11986 1 424 6.8E-286 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS01190 550a1eee5c1da2e633ac1e14d290e4a6 425 Gene3D G3DSA:3.40.640.10 61 303 4.9E-82 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS24425 1ee3dfbfe1a55bf3ffaeddf33c5a2c0d 487 Hamap MF_01932 AMP nucleosidase [amn]. 4 487 58.634 T 22-04-2016 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 PP4_RS24425 1ee3dfbfe1a55bf3ffaeddf33c5a2c0d 487 PANTHER PTHR21234:SF11 252 487 5.3E-120 T 22-04-2016 PP4_RS24425 1ee3dfbfe1a55bf3ffaeddf33c5a2c0d 487 PANTHER PTHR21234:SF11 182 227 5.3E-120 T 22-04-2016 PP4_RS24425 1ee3dfbfe1a55bf3ffaeddf33c5a2c0d 487 TIGRFAM TIGR01717 AMP-nucleosdse: AMP nucleosidase 11 487 2.2E-235 T 22-04-2016 IPR011271 AMP nucleosidase GO:0008714|GO:0009116|GO:0044209 KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 PP4_RS24425 1ee3dfbfe1a55bf3ffaeddf33c5a2c0d 487 Gene3D G3DSA:3.30.1730.10 7 169 9.5E-54 T 22-04-2016 IPR018953 AMP nucleoside phosphorylase, N-terminal KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 PP4_RS24425 1ee3dfbfe1a55bf3ffaeddf33c5a2c0d 487 SUPERFAMILY SSF53167 10 487 2.49E-143 T 22-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 PP4_RS24425 1ee3dfbfe1a55bf3ffaeddf33c5a2c0d 487 PANTHER PTHR21234 182 227 5.3E-120 T 22-04-2016 IPR018017 Nucleoside phosphorylase PP4_RS24425 1ee3dfbfe1a55bf3ffaeddf33c5a2c0d 487 PANTHER PTHR21234 252 487 5.3E-120 T 22-04-2016 IPR018017 Nucleoside phosphorylase PP4_RS24425 1ee3dfbfe1a55bf3ffaeddf33c5a2c0d 487 Pfam PF10423 Bacterial AMP nucleoside phosphorylase N-terminus 13 167 3.7E-48 T 22-04-2016 IPR018953 AMP nucleoside phosphorylase, N-terminal KEGG: 00230+3.2.2.4|MetaCyc: PWY-6617 PP4_RS24425 1ee3dfbfe1a55bf3ffaeddf33c5a2c0d 487 Pfam PF01048 Phosphorylase superfamily 272 434 1.6E-16 T 22-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 PP4_RS24425 1ee3dfbfe1a55bf3ffaeddf33c5a2c0d 487 Gene3D G3DSA:3.40.50.1580 176 468 5.6E-106 T 22-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 PP4_RS15485 a67d0a939b71b7230734cbf16dd1987d 115 SUPERFAMILY SSF46785 5 83 2.21E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS15485 a67d0a939b71b7230734cbf16dd1987d 115 PANTHER PTHR33154:SF9 6 97 2.9E-20 T 22-04-2016 PP4_RS15485 a67d0a939b71b7230734cbf16dd1987d 115 SMART SM00418 6 88 1.4E-27 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 PP4_RS15485 a67d0a939b71b7230734cbf16dd1987d 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 28 39 7.6E-21 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 PP4_RS15485 a67d0a939b71b7230734cbf16dd1987d 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 41 56 7.6E-21 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 PP4_RS15485 a67d0a939b71b7230734cbf16dd1987d 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 8 23 7.6E-21 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 PP4_RS15485 a67d0a939b71b7230734cbf16dd1987d 115 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 56 71 7.6E-21 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 PP4_RS15485 a67d0a939b71b7230734cbf16dd1987d 115 Pfam PF01022 Bacterial regulatory protein, arsR family 13 57 1.2E-12 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 PP4_RS15485 a67d0a939b71b7230734cbf16dd1987d 115 Gene3D G3DSA:1.10.10.10 6 86 3.8E-26 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS15485 a67d0a939b71b7230734cbf16dd1987d 115 PANTHER PTHR33154 6 97 2.9E-20 T 22-04-2016 PP4_RS10185 7a78f340beb1e8c7672670de70113f07 300 PRINTS PR00691 Adhesin B signature 69 88 4.4E-10 T 22-04-2016 IPR006129 Adhesin B GO:0007155 PP4_RS10185 7a78f340beb1e8c7672670de70113f07 300 PRINTS PR00691 Adhesin B signature 50 68 4.4E-10 T 22-04-2016 IPR006129 Adhesin B GO:0007155 PP4_RS10185 7a78f340beb1e8c7672670de70113f07 300 PRINTS PR00691 Adhesin B signature 274 292 4.4E-10 T 22-04-2016 IPR006129 Adhesin B GO:0007155 PP4_RS10185 7a78f340beb1e8c7672670de70113f07 300 PRINTS PR00691 Adhesin B signature 25 46 4.4E-10 T 22-04-2016 IPR006129 Adhesin B GO:0007155 PP4_RS10185 7a78f340beb1e8c7672670de70113f07 300 PRINTS PR00691 Adhesin B signature 127 146 4.4E-10 T 22-04-2016 IPR006129 Adhesin B GO:0007155 PP4_RS10185 7a78f340beb1e8c7672670de70113f07 300 Gene3D G3DSA:3.40.50.1980 177 296 7.2E-28 T 22-04-2016 PP4_RS10185 7a78f340beb1e8c7672670de70113f07 300 SUPERFAMILY SSF53807 24 296 6.38E-67 T 22-04-2016 PP4_RS10185 7a78f340beb1e8c7672670de70113f07 300 Pfam PF01297 Zinc-uptake complex component A periplasmic 31 293 1.0E-55 T 22-04-2016 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 PP4_RS10185 7a78f340beb1e8c7672670de70113f07 300 Gene3D G3DSA:3.40.50.1980 20 176 3.3E-41 T 22-04-2016 PP4_RS10185 7a78f340beb1e8c7672670de70113f07 300 PRINTS PR00690 Adhesin family signature 69 86 5.5E-8 T 22-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 PP4_RS10185 7a78f340beb1e8c7672670de70113f07 300 PRINTS PR00690 Adhesin family signature 56 69 5.5E-8 T 22-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 PP4_RS10185 7a78f340beb1e8c7672670de70113f07 300 PRINTS PR00690 Adhesin family signature 238 256 5.5E-8 T 22-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 PP4_RS10185 7a78f340beb1e8c7672670de70113f07 300 PRINTS PR00690 Adhesin family signature 185 206 5.5E-8 T 22-04-2016 IPR006128 Adhesion lipoprotein GO:0007155 PP4_RS10185 7a78f340beb1e8c7672670de70113f07 300 PANTHER PTHR30477 1 300 3.6E-150 T 22-04-2016 PP4_RS10185 7a78f340beb1e8c7672670de70113f07 300 PANTHER PTHR30477:SF15 1 300 3.6E-150 T 22-04-2016 PP4_RS01355 db9ed8174e44436718f552af59d9cb94 246 SUPERFAMILY SSF46894 138 240 5.39E-26 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS01355 db9ed8174e44436718f552af59d9cb94 246 Pfam PF00072 Response regulator receiver domain 13 123 1.6E-29 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS01355 db9ed8174e44436718f552af59d9cb94 246 PANTHER PTHR26402 11 241 2.4E-101 T 22-04-2016 PP4_RS01355 db9ed8174e44436718f552af59d9cb94 246 Gene3D G3DSA:1.10.10.10 139 241 8.6E-31 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS01355 db9ed8174e44436718f552af59d9cb94 246 SUPERFAMILY SSF52172 9 131 2.28E-39 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS01355 db9ed8174e44436718f552af59d9cb94 246 SMART SM00448 11 122 1.1E-40 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS01355 db9ed8174e44436718f552af59d9cb94 246 SMART SM00862 161 238 4.7E-23 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS01355 db9ed8174e44436718f552af59d9cb94 246 PANTHER PTHR26402:SF292 11 241 2.4E-101 T 22-04-2016 PP4_RS01355 db9ed8174e44436718f552af59d9cb94 246 Gene3D G3DSA:3.40.50.2300 11 129 1.5E-40 T 22-04-2016 PP4_RS01355 db9ed8174e44436718f552af59d9cb94 246 Pfam PF00486 Transcriptional regulatory protein, C terminal 166 238 2.2E-21 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS10320 0920115a4a6ca554c1779befd5190d9b 125 SUPERFAMILY SSF52172 9 125 2.99E-26 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS10320 0920115a4a6ca554c1779befd5190d9b 125 PANTHER PTHR24423 5 124 2.6E-24 T 22-04-2016 PP4_RS10320 0920115a4a6ca554c1779befd5190d9b 125 PANTHER PTHR24423:SF544 5 124 2.6E-24 T 22-04-2016 PP4_RS10320 0920115a4a6ca554c1779befd5190d9b 125 SMART SM00448 7 120 9.0E-14 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS10320 0920115a4a6ca554c1779befd5190d9b 125 Pfam PF00072 Response regulator receiver domain 9 120 1.3E-17 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS10320 0920115a4a6ca554c1779befd5190d9b 125 Gene3D G3DSA:3.40.50.2300 8 125 1.1E-30 T 22-04-2016 PP4_RS10530 bb608b9066d83666ffb151bc064dd157 257 PANTHER PTHR24220:SF491 128 255 6.0E-111 T 22-04-2016 PP4_RS10530 bb608b9066d83666ffb151bc064dd157 257 PANTHER PTHR24220:SF491 7 112 6.0E-111 T 22-04-2016 PP4_RS10530 bb608b9066d83666ffb151bc064dd157 257 Pfam PF00005 ABC transporter 21 181 6.0E-32 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS10530 bb608b9066d83666ffb151bc064dd157 257 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 230 252 1.1E-11 T 22-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal PP4_RS10530 bb608b9066d83666ffb151bc064dd157 257 Gene3D G3DSA:3.40.50.300 3 254 2.7E-68 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS10530 bb608b9066d83666ffb151bc064dd157 257 SMART SM00382 30 238 2.0E-5 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS10530 bb608b9066d83666ffb151bc064dd157 257 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS10530 bb608b9066d83666ffb151bc064dd157 257 PANTHER PTHR24220 128 255 6.0E-111 T 22-04-2016 PP4_RS10530 bb608b9066d83666ffb151bc064dd157 257 PANTHER PTHR24220 7 112 6.0E-111 T 22-04-2016 PP4_RS10530 bb608b9066d83666ffb151bc064dd157 257 SUPERFAMILY SSF52540 4 252 1.7E-63 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS07590 709c4b3810a24201c79ed8c7cedea231 434 SUPERFAMILY SSF51338 374 403 7.26E-11 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PP4_RS07590 709c4b3810a24201c79ed8c7cedea231 434 SUPERFAMILY SSF51338 32 73 7.26E-11 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PP4_RS07590 709c4b3810a24201c79ed8c7cedea231 434 PANTHER PTHR11271:SF6 29 434 1.3E-168 T 22-04-2016 IPR014311 Guanine deaminase GO:0006147|GO:0008270|GO:0008892 KEGG: 00230+3.5.4.3|MetaCyc: PWY-5497|MetaCyc: PWY-6606|MetaCyc: PWY-6608|MetaCyc: PWY-7442|UniPathway: UPA00603 PP4_RS07590 709c4b3810a24201c79ed8c7cedea231 434 Gene3D G3DSA:3.20.20.140 79 374 5.8E-120 T 22-04-2016 PP4_RS07590 709c4b3810a24201c79ed8c7cedea231 434 PANTHER PTHR11271 29 434 1.3E-168 T 22-04-2016 PP4_RS07590 709c4b3810a24201c79ed8c7cedea231 434 SUPERFAMILY SSF51556 72 375 6.41E-106 T 22-04-2016 IPR032466 Metal-dependent hydrolase PP4_RS07590 709c4b3810a24201c79ed8c7cedea231 434 Gene3D G3DSA:2.30.40.10 28 78 4.4E-10 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PP4_RS07590 709c4b3810a24201c79ed8c7cedea231 434 TIGRFAM TIGR02967 guan_deamin: guanine deaminase 29 428 3.3E-194 T 22-04-2016 IPR014311 Guanine deaminase GO:0006147|GO:0008270|GO:0008892 KEGG: 00230+3.5.4.3|MetaCyc: PWY-5497|MetaCyc: PWY-6606|MetaCyc: PWY-6608|MetaCyc: PWY-7442|UniPathway: UPA00603 PP4_RS07590 709c4b3810a24201c79ed8c7cedea231 434 Pfam PF01979 Amidohydrolase family 70 430 1.2E-69 T 22-04-2016 IPR006680 Amidohydrolase-related GO:0016787 PP4_RS04400 7c715e7e9d84d73a86c510b7d0d2a4b8 280 Gene3D G3DSA:3.30.70.100 179 262 7.4E-25 T 22-04-2016 PP4_RS04400 7c715e7e9d84d73a86c510b7d0d2a4b8 280 Pfam PF00924 Mechanosensitive ion channel 69 264 1.4E-53 T 22-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 PP4_RS04400 7c715e7e9d84d73a86c510b7d0d2a4b8 280 PANTHER PTHR30221 1 276 3.0E-91 T 22-04-2016 PP4_RS04400 7c715e7e9d84d73a86c510b7d0d2a4b8 280 SUPERFAMILY SSF50182 111 175 3.92E-18 T 22-04-2016 IPR010920 LSM domain PP4_RS04400 7c715e7e9d84d73a86c510b7d0d2a4b8 280 PANTHER PTHR30221:SF7 1 276 3.0E-91 T 22-04-2016 PP4_RS04400 7c715e7e9d84d73a86c510b7d0d2a4b8 280 SUPERFAMILY SSF82689 177 275 6.41E-28 T 22-04-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 PP4_RS04400 7c715e7e9d84d73a86c510b7d0d2a4b8 280 SUPERFAMILY SSF82861 25 109 1.06E-14 T 22-04-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 PP4_RS04400 7c715e7e9d84d73a86c510b7d0d2a4b8 280 Gene3D G3DSA:2.30.30.60 126 175 1.3E-19 T 22-04-2016 PP4_RS27060 35b12d94168d497e3ddb2d9a3ac25c6c 467 Pfam PF08668 HDOD domain 194 394 1.6E-48 T 22-04-2016 IPR013976 Metal-dependent hydrolase HDOD PP4_RS27060 35b12d94168d497e3ddb2d9a3ac25c6c 467 PANTHER PTHR33525:SF3 161 467 3.4E-89 T 22-04-2016 PP4_RS27060 35b12d94168d497e3ddb2d9a3ac25c6c 467 Pfam PF04073 Aminoacyl-tRNA editing domain 30 139 4.6E-9 T 22-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 PP4_RS27060 35b12d94168d497e3ddb2d9a3ac25c6c 467 PANTHER PTHR33525 161 467 3.4E-89 T 22-04-2016 PP4_RS27060 35b12d94168d497e3ddb2d9a3ac25c6c 467 PIRSF PIRSF036888 1 465 1.2E-275 T 22-04-2016 IPR014627 Uncharacterised conserved protein UCP036888, signal transduction HD-GYP-like, PA5346 type PP4_RS27060 35b12d94168d497e3ddb2d9a3ac25c6c 467 SUPERFAMILY SSF109604 179 451 3.03E-63 T 22-04-2016 PP4_RS27060 35b12d94168d497e3ddb2d9a3ac25c6c 467 Gene3D G3DSA:1.10.3150.10 176 451 2.3E-78 T 22-04-2016 IPR013976 Metal-dependent hydrolase HDOD PP4_RS27060 35b12d94168d497e3ddb2d9a3ac25c6c 467 SUPERFAMILY SSF55826 20 143 4.19E-11 T 22-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 PP4_RS13665 904ccf38923223306753effe6b20a76a 562 SUPERFAMILY SSF56801 47 559 1.26E-117 T 22-04-2016 PP4_RS13665 904ccf38923223306753effe6b20a76a 562 Gene3D G3DSA:3.40.50.980 48 206 4.8E-32 T 22-04-2016 PP4_RS13665 904ccf38923223306753effe6b20a76a 562 Gene3D G3DSA:2.30.38.10 383 455 3.3E-21 T 22-04-2016 PP4_RS13665 904ccf38923223306753effe6b20a76a 562 ProSitePatterns PS00455 Putative AMP-binding domain signature. 202 213 - T 22-04-2016 IPR020845 AMP-binding, conserved site PP4_RS13665 904ccf38923223306753effe6b20a76a 562 PANTHER PTHR24096 48 557 4.4E-120 T 22-04-2016 PP4_RS13665 904ccf38923223306753effe6b20a76a 562 Gene3D G3DSA:3.40.50.980 207 368 1.5E-27 T 22-04-2016 PP4_RS13665 904ccf38923223306753effe6b20a76a 562 Pfam PF00501 AMP-binding enzyme 48 464 1.5E-81 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PP4_RS13665 904ccf38923223306753effe6b20a76a 562 Pfam PF13193 AMP-binding enzyme C-terminal domain 473 549 7.3E-11 T 22-04-2016 IPR025110 AMP-binding enzyme C-terminal domain PP4_RS13665 904ccf38923223306753effe6b20a76a 562 Gene3D G3DSA:3.30.300.30 459 558 1.5E-21 T 22-04-2016 PP4_RS11455 eec67cc9cf4f22163d3a7e402a5ff406 138 PANTHER PTHR11803 27 136 1.4E-32 T 22-04-2016 IPR006175 YjgF/YER057c/UK114 family PP4_RS11455 eec67cc9cf4f22163d3a7e402a5ff406 138 Pfam PF01042 Endoribonuclease L-PSP 26 134 1.8E-22 T 22-04-2016 IPR006175 YjgF/YER057c/UK114 family PP4_RS11455 eec67cc9cf4f22163d3a7e402a5ff406 138 SUPERFAMILY SSF55298 24 136 3.46E-31 T 22-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like PP4_RS11455 eec67cc9cf4f22163d3a7e402a5ff406 138 Gene3D G3DSA:3.30.1330.40 5 137 5.4E-39 T 22-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like PP4_RS04040 403fc1da18da9e6641f4582201e9b0e1 385 SUPERFAMILY SSF52266 110 209 8.79E-5 T 22-04-2016 IPR013830 SGNH hydrolase-type esterase domain PP4_RS04040 403fc1da18da9e6641f4582201e9b0e1 385 Gene3D G3DSA:3.40.50.1110 116 210 4.4E-4 T 22-04-2016 IPR013830 SGNH hydrolase-type esterase domain PP4_RS04040 403fc1da18da9e6641f4582201e9b0e1 385 Pfam PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX 81 346 1.0E-98 T 22-04-2016 IPR031811 AlgX, SGNH hydrolase-like domain KEGG: 00061+2.3.1.-|KEGG: 00253+2.3.1.-|KEGG: 00261+2.3.1.-|KEGG: 00310+2.3.1.-|KEGG: 00330+2.3.1.-|KEGG: 00332+2.3.1.-|KEGG: 00340+2.3.1.-|KEGG: 00350+2.3.1.-|KEGG: 00564+2.3.1.-|KEGG: 00565+2.3.1.-|KEGG: 00604+2.3.1.-|KEGG: 00623+2.3.1.-|KEGG: 00626+2.3.1.-|KEGG: 00627+2.3.1.-|KEGG: 00642+2.3.1.-|KEGG: 00650+2.3.1.-|KEGG: 00680+2.3.1.-|KEGG: 00903+2.3.1.-|KEGG: 00904+2.3.1.-|KEGG: 00906+2.3.1.-|KEGG: 00940+2.3.1.-|KEGG: 00942+2.3.1.-|KEGG: 00950+2.3.1.-|KEGG: 00960+2.3.1.-|KEGG: 00965+2.3.1.-|UniPathway: UPA00286 PP4_RS04460 c9c8dd52a85deba7c22f1ad68ecc12b7 226 Gene3D G3DSA:3.40.50.150 11 216 2.3E-23 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS04460 c9c8dd52a85deba7c22f1ad68ecc12b7 226 Pfam PF13649 Methyltransferase domain 55 149 1.4E-13 T 22-04-2016 PP4_RS04460 c9c8dd52a85deba7c22f1ad68ecc12b7 226 SUPERFAMILY SSF53335 11 222 1.07E-26 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS04460 c9c8dd52a85deba7c22f1ad68ecc12b7 226 PANTHER PTHR10108 7 222 2.3E-52 T 22-04-2016 PP4_RS04460 c9c8dd52a85deba7c22f1ad68ecc12b7 226 PANTHER PTHR10108:SF855 7 222 2.3E-52 T 22-04-2016 PP4_RS01140 7ebb25a0b0fe3c27e82b40d2fa17115c 322 PANTHER PTHR12697:SF18 25 317 5.4E-36 T 22-04-2016 PP4_RS01140 7ebb25a0b0fe3c27e82b40d2fa17115c 322 PANTHER PTHR12697 25 317 5.4E-36 T 22-04-2016 PP4_RS01140 7ebb25a0b0fe3c27e82b40d2fa17115c 322 Pfam PF13646 HEAT repeats 112 178 2.9E-7 T 22-04-2016 PP4_RS01140 7ebb25a0b0fe3c27e82b40d2fa17115c 322 Pfam PF13646 HEAT repeats 231 315 1.1E-14 T 22-04-2016 PP4_RS01140 7ebb25a0b0fe3c27e82b40d2fa17115c 322 Pfam PF13646 HEAT repeats 13 96 1.3E-11 T 22-04-2016 PP4_RS01140 7ebb25a0b0fe3c27e82b40d2fa17115c 322 Gene3D G3DSA:1.25.10.10 53 317 6.0E-52 T 22-04-2016 IPR011989 Armadillo-like helical PP4_RS01140 7ebb25a0b0fe3c27e82b40d2fa17115c 322 Pfam PF02985 HEAT repeat 198 226 6.3E-5 T 22-04-2016 IPR000357 HEAT repeat GO:0005515 PP4_RS01140 7ebb25a0b0fe3c27e82b40d2fa17115c 322 SUPERFAMILY SSF48371 58 280 1.78E-44 T 22-04-2016 IPR016024 Armadillo-type fold GO:0005488 PP4_RS01140 7ebb25a0b0fe3c27e82b40d2fa17115c 322 SMART SM00567 E-Z type HEAT repeats 242 271 0.0071 T 22-04-2016 IPR004155 PBS lyase HEAT-like repeat PP4_RS01140 7ebb25a0b0fe3c27e82b40d2fa17115c 322 SMART SM00567 E-Z type HEAT repeats 180 209 0.037 T 22-04-2016 IPR004155 PBS lyase HEAT-like repeat PP4_RS01140 7ebb25a0b0fe3c27e82b40d2fa17115c 322 SMART SM00567 E-Z type HEAT repeats 273 302 0.0099 T 22-04-2016 IPR004155 PBS lyase HEAT-like repeat PP4_RS01140 7ebb25a0b0fe3c27e82b40d2fa17115c 322 SMART SM00567 E-Z type HEAT repeats 55 84 0.43 T 22-04-2016 IPR004155 PBS lyase HEAT-like repeat PP4_RS01140 7ebb25a0b0fe3c27e82b40d2fa17115c 322 SMART SM00567 E-Z type HEAT repeats 148 177 3.0 T 22-04-2016 IPR004155 PBS lyase HEAT-like repeat PP4_RS01140 7ebb25a0b0fe3c27e82b40d2fa17115c 322 SMART SM00567 E-Z type HEAT repeats 211 240 8.4E-6 T 22-04-2016 IPR004155 PBS lyase HEAT-like repeat PP4_RS01140 7ebb25a0b0fe3c27e82b40d2fa17115c 322 SMART SM00567 E-Z type HEAT repeats 23 52 11.0 T 22-04-2016 IPR004155 PBS lyase HEAT-like repeat PP4_RS01140 7ebb25a0b0fe3c27e82b40d2fa17115c 322 SMART SM00567 E-Z type HEAT repeats 117 146 2.4 T 22-04-2016 IPR004155 PBS lyase HEAT-like repeat PP4_RS01140 7ebb25a0b0fe3c27e82b40d2fa17115c 322 SMART SM00567 E-Z type HEAT repeats 86 115 160.0 T 22-04-2016 IPR004155 PBS lyase HEAT-like repeat PP4_RS23580 4551f03d4b35eae47ac4de0bd1ba6417 480 Pfam PF00072 Response regulator receiver domain 4 109 3.7E-22 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS23580 4551f03d4b35eae47ac4de0bd1ba6417 480 SMART SM00382 172 321 2.1E-10 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS23580 4551f03d4b35eae47ac4de0bd1ba6417 480 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 238 253 - T 22-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PP4_RS23580 4551f03d4b35eae47ac4de0bd1ba6417 480 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 365 374 - T 22-04-2016 IPR025944 Sigma-54 interaction domain, conserved site PP4_RS23580 4551f03d4b35eae47ac4de0bd1ba6417 480 SUPERFAMILY SSF52540 151 393 5.77E-72 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23580 4551f03d4b35eae47ac4de0bd1ba6417 480 SUPERFAMILY SSF52172 1 197 6.4E-38 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS23580 4551f03d4b35eae47ac4de0bd1ba6417 480 PANTHER PTHR32071:SF18 1 480 3.8E-219 T 22-04-2016 PP4_RS23580 4551f03d4b35eae47ac4de0bd1ba6417 480 PANTHER PTHR32071 1 480 3.8E-219 T 22-04-2016 PP4_RS23580 4551f03d4b35eae47ac4de0bd1ba6417 480 Pfam PF00158 Sigma-54 interaction domain 152 318 8.7E-73 T 22-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 PP4_RS23580 4551f03d4b35eae47ac4de0bd1ba6417 480 SMART SM00448 2 109 5.3E-29 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS23580 4551f03d4b35eae47ac4de0bd1ba6417 480 Gene3D G3DSA:3.40.50.2300 1 119 5.6E-31 T 22-04-2016 PP4_RS23580 4551f03d4b35eae47ac4de0bd1ba6417 480 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 176 189 - T 22-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 PP4_RS23580 4551f03d4b35eae47ac4de0bd1ba6417 480 Gene3D G3DSA:1.10.8.60 325 397 1.2E-21 T 22-04-2016 PP4_RS23580 4551f03d4b35eae47ac4de0bd1ba6417 480 Gene3D G3DSA:3.40.50.300 151 324 2.9E-61 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS13850 694f594636c7e5f3bbfaad5d83cde040 205 Pfam PF02223 Thymidylate kinase 9 180 1.9E-7 T 22-04-2016 PP4_RS13850 694f594636c7e5f3bbfaad5d83cde040 205 Gene3D G3DSA:3.40.50.300 5 199 1.7E-21 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS13850 694f594636c7e5f3bbfaad5d83cde040 205 SUPERFAMILY SSF52540 1 201 5.75E-20 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS18750 2bf85016843dbe3132b4ac41385c1b83 408 Pfam PF03454 MoeA C-terminal region (domain IV) 339 403 3.1E-13 T 22-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 PP4_RS18750 2bf85016843dbe3132b4ac41385c1b83 408 SUPERFAMILY SSF53218 185 328 1.03E-41 T 22-04-2016 IPR001453 MoaB/Mog domain PP4_RS18750 2bf85016843dbe3132b4ac41385c1b83 408 PANTHER PTHR10192:SF17 12 407 5.9E-184 T 22-04-2016 PP4_RS18750 2bf85016843dbe3132b4ac41385c1b83 408 ProSitePatterns PS01079 Molybdenum cofactor biosynthesis proteins signature 2. 260 293 - T 22-04-2016 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 UniPathway: UPA00344 PP4_RS18750 2bf85016843dbe3132b4ac41385c1b83 408 PANTHER PTHR10192 12 407 5.9E-184 T 22-04-2016 PP4_RS18750 2bf85016843dbe3132b4ac41385c1b83 408 SUPERFAMILY SSF63882 11 184 3.92E-54 T 22-04-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 PP4_RS18750 2bf85016843dbe3132b4ac41385c1b83 408 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 184 319 1.8E-31 T 22-04-2016 IPR001453 MoaB/Mog domain PP4_RS18750 2bf85016843dbe3132b4ac41385c1b83 408 Gene3D G3DSA:3.40.980.10 171 336 2.9E-58 T 22-04-2016 IPR001453 MoaB/Mog domain PP4_RS18750 2bf85016843dbe3132b4ac41385c1b83 408 SMART SM00852 188 324 1.1E-41 T 22-04-2016 IPR001453 MoaB/Mog domain PP4_RS18750 2bf85016843dbe3132b4ac41385c1b83 408 SUPERFAMILY SSF63867 334 405 1.44E-15 T 22-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 PP4_RS18750 2bf85016843dbe3132b4ac41385c1b83 408 Gene3D G3DSA:3.90.105.10 138 170 1.2E-18 T 22-04-2016 PP4_RS18750 2bf85016843dbe3132b4ac41385c1b83 408 Gene3D G3DSA:2.170.190.11 59 137 3.2E-29 T 22-04-2016 PP4_RS18750 2bf85016843dbe3132b4ac41385c1b83 408 Gene3D G3DSA:2.40.340.10 338 404 1.6E-11 T 22-04-2016 IPR005111 MoeA, C-terminal, domain IV GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 PP4_RS18750 2bf85016843dbe3132b4ac41385c1b83 408 Pfam PF03453 MoeA N-terminal region (domain I and II) 15 175 2.9E-36 T 22-04-2016 IPR005110 MoeA, N-terminal and linker domain GO:0032324 MetaCyc: PWY-6823|UniPathway: UPA00344 PP4_RS18750 2bf85016843dbe3132b4ac41385c1b83 408 Pfam PF00994 Probable molybdopterin binding domain 188 322 5.0E-27 T 22-04-2016 IPR001453 MoaB/Mog domain PP4_RS21630 b43cca07e77f5964cb6017d94e218c3a 489 PANTHER PTHR23429 7 488 2.3E-211 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS21630 b43cca07e77f5964cb6017d94e218c3a 489 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 187 485 9.8E-115 T 22-04-2016 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS21630 b43cca07e77f5964cb6017d94e218c3a 489 SUPERFAMILY SSF51735 4 187 4.13E-52 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS21630 b43cca07e77f5964cb6017d94e218c3a 489 Gene3D G3DSA:3.30.360.10 184 485 1.8E-120 T 22-04-2016 PP4_RS21630 b43cca07e77f5964cb6017d94e218c3a 489 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 164 192 1.9E-49 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS21630 b43cca07e77f5964cb6017d94e218c3a 489 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 216 233 1.9E-49 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS21630 b43cca07e77f5964cb6017d94e218c3a 489 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 140 153 1.9E-49 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS21630 b43cca07e77f5964cb6017d94e218c3a 489 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 234 250 1.9E-49 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS21630 b43cca07e77f5964cb6017d94e218c3a 489 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 325 351 1.9E-49 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS21630 b43cca07e77f5964cb6017d94e218c3a 489 PIRSF PIRSF000110 1 488 4.5E-166 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS21630 b43cca07e77f5964cb6017d94e218c3a 489 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 13 184 4.2E-50 T 22-04-2016 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS21630 b43cca07e77f5964cb6017d94e218c3a 489 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 174 180 - T 22-04-2016 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS21630 b43cca07e77f5964cb6017d94e218c3a 489 SUPERFAMILY SSF55347 179 486 7.85E-113 T 22-04-2016 PP4_RS21630 b43cca07e77f5964cb6017d94e218c3a 489 Gene3D G3DSA:3.40.50.720 7 183 5.7E-54 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS21630 b43cca07e77f5964cb6017d94e218c3a 489 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 8 487 85.741 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS21630 b43cca07e77f5964cb6017d94e218c3a 489 PANTHER PTHR23429:SF0 7 488 2.3E-211 T 22-04-2016 PP4_RS21630 b43cca07e77f5964cb6017d94e218c3a 489 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 8 485 1.8E-171 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS01395 853038ffa6ea24dee8dc200aa4775925 90 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 4 89 1.1E-14 T 22-04-2016 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family PP4_RS01395 853038ffa6ea24dee8dc200aa4775925 90 SUPERFAMILY SSF143011 51 83 2.09E-5 T 22-04-2016 PP4_RS01395 853038ffa6ea24dee8dc200aa4775925 90 TIGRFAM TIGR02385 RelE_StbE: addiction module toxin, RelE/StbE family 3 87 7.3E-11 T 22-04-2016 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family PP4_RS01395 853038ffa6ea24dee8dc200aa4775925 90 PANTHER PTHR33755 1 90 5.9E-20 T 22-04-2016 PP4_RS11585 e6ddc4e398fa5491aa7c888bcf7c0f7f 511 Gene3D G3DSA:1.20.1250.20 269 422 4.8E-18 T 22-04-2016 PP4_RS11585 e6ddc4e398fa5491aa7c888bcf7c0f7f 511 Gene3D G3DSA:1.20.1250.20 464 498 4.8E-18 T 22-04-2016 PP4_RS11585 e6ddc4e398fa5491aa7c888bcf7c0f7f 511 PANTHER PTHR23501:SF52 2 499 3.0E-254 T 22-04-2016 PP4_RS11585 e6ddc4e398fa5491aa7c888bcf7c0f7f 511 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 15 496 2.8E-151 T 22-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 PP4_RS11585 e6ddc4e398fa5491aa7c888bcf7c0f7f 511 Pfam PF07690 Major Facilitator Superfamily 21 415 9.0E-54 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS11585 e6ddc4e398fa5491aa7c888bcf7c0f7f 511 Gene3D G3DSA:1.20.1250.20 18 194 3.8E-32 T 22-04-2016 PP4_RS11585 e6ddc4e398fa5491aa7c888bcf7c0f7f 511 PANTHER PTHR23501 2 499 3.0E-254 T 22-04-2016 PP4_RS11585 e6ddc4e398fa5491aa7c888bcf7c0f7f 511 SUPERFAMILY SSF103473 10 200 3.4E-64 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS11585 e6ddc4e398fa5491aa7c888bcf7c0f7f 511 SUPERFAMILY SSF103473 473 497 3.4E-64 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS11585 e6ddc4e398fa5491aa7c888bcf7c0f7f 511 SUPERFAMILY SSF103473 253 424 3.4E-64 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS21770 5b5914a2c834c0474357f3e5aaa4a17d 458 Pfam PF03313 Serine dehydratase alpha chain 187 452 2.7E-107 T 22-04-2016 IPR005130 Serine dehydratase-like, alpha subunit PP4_RS21770 5b5914a2c834c0474357f3e5aaa4a17d 458 TIGRFAM TIGR00720 sda_mono: L-serine ammonia-lyase 4 455 1.3E-217 T 22-04-2016 IPR004644 Iron-sulphur-dependent L-serine dehydratase single chain form GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17|UniPathway: UPA00138 PP4_RS21770 5b5914a2c834c0474357f3e5aaa4a17d 458 PANTHER PTHR30182:SF1 1 455 1.2E-246 T 22-04-2016 PP4_RS21770 5b5914a2c834c0474357f3e5aaa4a17d 458 Gene3D G3DSA:3.30.1330.90 11 157 9.1E-52 T 22-04-2016 IPR029009 Allosteric substrate binding domain PP4_RS21770 5b5914a2c834c0474357f3e5aaa4a17d 458 SUPERFAMILY SSF143548 17 157 1.6E-44 T 22-04-2016 IPR029009 Allosteric substrate binding domain PP4_RS21770 5b5914a2c834c0474357f3e5aaa4a17d 458 PANTHER PTHR30182 1 455 1.2E-246 T 22-04-2016 PP4_RS21770 5b5914a2c834c0474357f3e5aaa4a17d 458 Pfam PF03315 Serine dehydratase beta chain 4 156 2.7E-56 T 22-04-2016 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17|UniPathway: UPA00138 PP4_RS20235 a3cf9794508452151acac51b28146ba6 464 Gene3D G3DSA:1.20.200.10 137 415 5.5E-101 T 22-04-2016 PP4_RS20235 a3cf9794508452151acac51b28146ba6 464 Gene3D G3DSA:1.10.40.30 416 461 1.4E-32 T 22-04-2016 PP4_RS20235 a3cf9794508452151acac51b28146ba6 464 Pfam PF10415 Fumarase C C-terminus 406 458 6.4E-28 T 22-04-2016 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 PP4_RS20235 a3cf9794508452151acac51b28146ba6 464 Gene3D G3DSA:1.10.275.10 2 136 1.7E-59 T 22-04-2016 IPR024083 Fumarase/histidase, N-terminal PP4_RS20235 a3cf9794508452151acac51b28146ba6 464 SUPERFAMILY SSF48557 3 460 2.51E-154 T 22-04-2016 IPR008948 L-Aspartase-like GO:0003824 PP4_RS20235 a3cf9794508452151acac51b28146ba6 464 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 3 458 2.8E-218 T 22-04-2016 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 PP4_RS20235 a3cf9794508452151acac51b28146ba6 464 Hamap MF_00743 Fumarate hydratase class II [fumC]. 2 460 90.148 T 22-04-2016 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 PP4_RS20235 a3cf9794508452151acac51b28146ba6 464 ProSitePatterns PS00163 Fumarate lyases signature. 315 324 - T 22-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 PP4_RS20235 a3cf9794508452151acac51b28146ba6 464 PRINTS PR00149 Fumarate lyase superfamily signature 132 150 4.5E-32 T 22-04-2016 IPR000362 Fumarate lyase family PP4_RS20235 a3cf9794508452151acac51b28146ba6 464 PRINTS PR00149 Fumarate lyase superfamily signature 269 296 4.5E-32 T 22-04-2016 IPR000362 Fumarate lyase family PP4_RS20235 a3cf9794508452151acac51b28146ba6 464 PRINTS PR00149 Fumarate lyase superfamily signature 178 196 4.5E-32 T 22-04-2016 IPR000362 Fumarate lyase family PP4_RS20235 a3cf9794508452151acac51b28146ba6 464 PRINTS PR00149 Fumarate lyase superfamily signature 315 331 4.5E-32 T 22-04-2016 IPR000362 Fumarate lyase family PP4_RS20235 a3cf9794508452151acac51b28146ba6 464 PANTHER PTHR11444:SF1 3 460 3.8E-233 T 22-04-2016 PP4_RS20235 a3cf9794508452151acac51b28146ba6 464 PANTHER PTHR11444 3 460 3.8E-233 T 22-04-2016 IPR000362 Fumarate lyase family PP4_RS20235 a3cf9794508452151acac51b28146ba6 464 Pfam PF00206 Lyase 11 340 2.5E-103 T 22-04-2016 IPR022761 Fumarate lyase, N-terminal PP4_RS22730 6d293539bf1b74cc8ce4ec332e965b69 560 Gene3D G3DSA:2.30.38.10 365 441 4.0E-19 T 22-04-2016 PP4_RS22730 6d293539bf1b74cc8ce4ec332e965b69 560 Pfam PF13193 AMP-binding enzyme C-terminal domain 457 536 2.0E-17 T 22-04-2016 IPR025110 AMP-binding enzyme C-terminal domain PP4_RS22730 6d293539bf1b74cc8ce4ec332e965b69 560 Gene3D G3DSA:3.40.50.980 33 190 7.0E-32 T 22-04-2016 PP4_RS22730 6d293539bf1b74cc8ce4ec332e965b69 560 SUPERFAMILY SSF56801 34 548 7.2E-132 T 22-04-2016 PP4_RS22730 6d293539bf1b74cc8ce4ec332e965b69 560 Pfam PF00501 AMP-binding enzyme 33 447 2.9E-90 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PP4_RS22730 6d293539bf1b74cc8ce4ec332e965b69 560 Gene3D G3DSA:3.40.50.980 191 353 2.7E-34 T 22-04-2016 PP4_RS22730 6d293539bf1b74cc8ce4ec332e965b69 560 Gene3D G3DSA:3.30.300.30 442 544 1.8E-25 T 22-04-2016 PP4_RS22730 6d293539bf1b74cc8ce4ec332e965b69 560 PANTHER PTHR24096 13 547 0.0 T 22-04-2016 PP4_RS22730 6d293539bf1b74cc8ce4ec332e965b69 560 PANTHER PTHR24096:SF136 13 547 0.0 T 22-04-2016 PP4_RS16810 348cd555e621af32f2a7820255702ba6 470 ProSitePatterns PS00392 DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site. 288 309 - T 22-04-2016 IPR021115 Pyridoxal-phosphate binding site GO:0016831 PP4_RS16810 348cd555e621af32f2a7820255702ba6 470 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 47 66 1.2E-47 T 22-04-2016 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 PP4_RS16810 348cd555e621af32f2a7820255702ba6 470 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 385 404 1.2E-47 T 22-04-2016 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 PP4_RS16810 348cd555e621af32f2a7820255702ba6 470 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 29 46 1.2E-47 T 22-04-2016 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 PP4_RS16810 348cd555e621af32f2a7820255702ba6 470 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 113 132 1.2E-47 T 22-04-2016 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 PP4_RS16810 348cd555e621af32f2a7820255702ba6 470 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 73 92 1.2E-47 T 22-04-2016 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 PP4_RS16810 348cd555e621af32f2a7820255702ba6 470 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 94 112 1.2E-47 T 22-04-2016 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 PP4_RS16810 348cd555e621af32f2a7820255702ba6 470 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 6 25 1.2E-47 T 22-04-2016 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 PP4_RS16810 348cd555e621af32f2a7820255702ba6 470 PRINTS PR00800 Aromatic-L-amino-acid decarboxylase signature 342 357 1.2E-47 T 22-04-2016 IPR010977 Aromatic-L-amino-acid decarboxylase GO:0006520|GO:0016831 PP4_RS16810 348cd555e621af32f2a7820255702ba6 470 SUPERFAMILY SSF53383 2 468 5.41E-140 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS16810 348cd555e621af32f2a7820255702ba6 470 Pfam PF00282 Pyridoxal-dependent decarboxylase conserved domain 35 402 1.6E-97 T 22-04-2016 IPR002129 Pyridoxal phosphate-dependent decarboxylase GO:0016831|GO:0019752|GO:0030170 PP4_RS16810 348cd555e621af32f2a7820255702ba6 470 PANTHER PTHR11999:SF70 4 466 8.4E-199 T 22-04-2016 PP4_RS16810 348cd555e621af32f2a7820255702ba6 470 Gene3D G3DSA:3.90.1150.10 357 467 1.3E-28 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS16810 348cd555e621af32f2a7820255702ba6 470 PANTHER PTHR11999 4 466 8.4E-199 T 22-04-2016 PP4_RS16810 348cd555e621af32f2a7820255702ba6 470 Gene3D G3DSA:3.40.640.10 84 356 7.0E-99 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS16810 348cd555e621af32f2a7820255702ba6 470 Gene3D G3DSA:1.20.1340.10 2 81 1.3E-34 T 22-04-2016 PP4_RS21295 2132af99f0da8ef279329606f4652ddf 343 Gene3D G3DSA:3.40.50.300 4 234 1.9E-75 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS21295 2132af99f0da8ef279329606f4652ddf 343 ProSitePatterns PS00211 ABC transporters family signature. 135 149 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS21295 2132af99f0da8ef279329606f4652ddf 343 SUPERFAMILY SSF52540 5 242 2.4E-84 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS21295 2132af99f0da8ef279329606f4652ddf 343 SMART SM00382 29 212 2.4E-18 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS21295 2132af99f0da8ef279329606f4652ddf 343 Pfam PF08402 TOBE domain 257 337 1.1E-14 T 22-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 PP4_RS21295 2132af99f0da8ef279329606f4652ddf 343 SUPERFAMILY SSF50331 246 337 5.61E-9 T 22-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal PP4_RS21295 2132af99f0da8ef279329606f4652ddf 343 PANTHER PTHR24220:SF150 6 248 2.3E-136 T 22-04-2016 PP4_RS21295 2132af99f0da8ef279329606f4652ddf 343 Pfam PF00005 ABC transporter 21 162 2.6E-31 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS21295 2132af99f0da8ef279329606f4652ddf 343 PANTHER PTHR24220 6 248 2.3E-136 T 22-04-2016 PP4_RS09100 a487138a9bf3dda3a92a0368f44d4288 609 Pfam PF02080 TrkA-C domain 230 301 7.6E-15 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PP4_RS09100 a487138a9bf3dda3a92a0368f44d4288 609 Pfam PF02080 TrkA-C domain 325 393 6.6E-13 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PP4_RS09100 a487138a9bf3dda3a92a0368f44d4288 609 PANTHER PTHR10283:SF12 1 224 3.3E-202 T 22-04-2016 PP4_RS09100 a487138a9bf3dda3a92a0368f44d4288 609 PANTHER PTHR10283:SF12 447 607 3.3E-202 T 22-04-2016 PP4_RS09100 a487138a9bf3dda3a92a0368f44d4288 609 PANTHER PTHR10283:SF12 301 352 3.3E-202 T 22-04-2016 PP4_RS09100 a487138a9bf3dda3a92a0368f44d4288 609 PANTHER PTHR10283:SF12 243 267 3.3E-202 T 22-04-2016 PP4_RS09100 a487138a9bf3dda3a92a0368f44d4288 609 SUPERFAMILY SSF116726 230 307 1.57E-13 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PP4_RS09100 a487138a9bf3dda3a92a0368f44d4288 609 PANTHER PTHR10283 1 224 3.3E-202 T 22-04-2016 PP4_RS09100 a487138a9bf3dda3a92a0368f44d4288 609 PANTHER PTHR10283 447 607 3.3E-202 T 22-04-2016 PP4_RS09100 a487138a9bf3dda3a92a0368f44d4288 609 PANTHER PTHR10283 301 352 3.3E-202 T 22-04-2016 PP4_RS09100 a487138a9bf3dda3a92a0368f44d4288 609 PANTHER PTHR10283 243 267 3.3E-202 T 22-04-2016 PP4_RS09100 a487138a9bf3dda3a92a0368f44d4288 609 Gene3D G3DSA:3.30.70.1450 321 397 1.6E-22 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PP4_RS09100 a487138a9bf3dda3a92a0368f44d4288 609 Gene3D G3DSA:3.30.70.1450 231 310 8.2E-21 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PP4_RS09100 a487138a9bf3dda3a92a0368f44d4288 609 SUPERFAMILY SSF116726 317 394 5.62E-17 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PP4_RS09100 a487138a9bf3dda3a92a0368f44d4288 609 ProSitePatterns PS01271 Sodium:sulfate symporter family signature. 557 573 - T 22-04-2016 IPR031312 Sodium/sulphate symporter, conserved site PP4_RS09100 a487138a9bf3dda3a92a0368f44d4288 609 Pfam PF03600 Citrate transporter 16 554 4.0E-50 T 22-04-2016 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 PP4_RS20330 645f13499544199fd257a11f0414afaa 286 PANTHER PTHR30177 10 279 5.3E-80 T 22-04-2016 PP4_RS20330 645f13499544199fd257a11f0414afaa 286 Gene3D G3DSA:3.40.190.100 113 235 2.1E-35 T 22-04-2016 PP4_RS20330 645f13499544199fd257a11f0414afaa 286 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 29 275 9.9E-62 T 22-04-2016 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 PP4_RS20330 645f13499544199fd257a11f0414afaa 286 Gene3D G3DSA:3.40.190.10 27 112 5.2E-23 T 22-04-2016 PP4_RS20330 645f13499544199fd257a11f0414afaa 286 SUPERFAMILY SSF53850 28 285 8.31E-76 T 22-04-2016 PP4_RS20330 645f13499544199fd257a11f0414afaa 286 PANTHER PTHR30177:SF0 10 279 5.3E-80 T 22-04-2016 PP4_RS01320 59dd00d87f91bdac836b8315fc6a8fe4 265 Gene3D G3DSA:1.10.3720.10 56 250 8.0E-28 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS01320 59dd00d87f91bdac836b8315fc6a8fe4 265 PANTHER PTHR30151 9 264 2.0E-184 T 22-04-2016 PP4_RS01320 59dd00d87f91bdac836b8315fc6a8fe4 265 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 247 8.2E-27 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS01320 59dd00d87f91bdac836b8315fc6a8fe4 265 PANTHER PTHR30151:SF22 9 264 2.0E-184 T 22-04-2016 PP4_RS01320 59dd00d87f91bdac836b8315fc6a8fe4 265 SUPERFAMILY SSF161098 57 238 6.15E-36 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS13800 af2ac9b75544e695119fec014db24f0a 215 Gene3D G3DSA:1.10.3720.10 11 212 5.4E-46 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS13800 af2ac9b75544e695119fec014db24f0a 215 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 10 107 1.3E-31 T 22-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PP4_RS13800 af2ac9b75544e695119fec014db24f0a 215 PANTHER PTHR30614 1 213 1.4E-78 T 22-04-2016 PP4_RS13800 af2ac9b75544e695119fec014db24f0a 215 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 29 212 1.8E-18 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS13800 af2ac9b75544e695119fec014db24f0a 215 SUPERFAMILY SSF161098 11 198 2.35E-45 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS18400 2673d036e6cd6c2a4cdbb0189678d484 487 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 32 454 1.7E-31 T 22-04-2016 IPR001248 Purine-cytosine permease GO:0005215|GO:0016020|GO:0055085 PP4_RS18400 2673d036e6cd6c2a4cdbb0189678d484 487 PANTHER PTHR31806 23 479 5.6E-77 T 22-04-2016 PP4_RS18400 2673d036e6cd6c2a4cdbb0189678d484 487 PIRSF PIRSF002744 2 481 2.2E-95 T 22-04-2016 IPR026030 Purine-cytosine permease Fcy2/21/22 GO:0005215|GO:0016021|GO:0055085 PP4_RS09600 d32e0d3ab4f9275ddf2117340c94f770 140 SUPERFAMILY SSF46785 7 137 1.26E-32 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS09600 d32e0d3ab4f9275ddf2117340c94f770 140 Pfam PF01047 MarR family 32 90 1.7E-17 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS09600 d32e0d3ab4f9275ddf2117340c94f770 140 PANTHER PTHR33164 7 138 4.4E-62 T 22-04-2016 PP4_RS09600 d32e0d3ab4f9275ddf2117340c94f770 140 PANTHER PTHR33164:SF13 7 138 4.4E-62 T 22-04-2016 PP4_RS09600 d32e0d3ab4f9275ddf2117340c94f770 140 TIGRFAM TIGR02337 HpaR: homoprotocatechuate degradation operon regulator, HpaR 7 135 2.2E-53 T 22-04-2016 IPR012712 Homoprotocatechuate degradation transcriptional regulator HpaR GO:0003677|GO:0010124|GO:0045892 PP4_RS09600 d32e0d3ab4f9275ddf2117340c94f770 140 Gene3D G3DSA:1.10.10.10 4 137 8.7E-38 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS09600 d32e0d3ab4f9275ddf2117340c94f770 140 PRINTS PR00598 Bacterial regulatory protein MarR family signature 66 81 1.0E-5 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS09600 d32e0d3ab4f9275ddf2117340c94f770 140 PRINTS PR00598 Bacterial regulatory protein MarR family signature 85 101 1.0E-5 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS09600 d32e0d3ab4f9275ddf2117340c94f770 140 PRINTS PR00598 Bacterial regulatory protein MarR family signature 115 135 1.0E-5 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS09600 d32e0d3ab4f9275ddf2117340c94f770 140 SMART SM00347 25 125 6.9E-30 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS15180 fb02e249ba6d6a399f0863d90026ec78 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.4E-35 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15180 fb02e249ba6d6a399f0863d90026ec78 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 1.4E-35 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15180 fb02e249ba6d6a399f0863d90026ec78 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 171 188 1.4E-35 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15180 fb02e249ba6d6a399f0863d90026ec78 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 79 90 1.4E-35 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15180 fb02e249ba6d6a399f0863d90026ec78 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 1.4E-35 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15180 fb02e249ba6d6a399f0863d90026ec78 250 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 1.4E-35 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15180 fb02e249ba6d6a399f0863d90026ec78 250 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 8 185 7.2E-4 T 22-04-2016 PP4_RS15180 fb02e249ba6d6a399f0863d90026ec78 250 Gene3D G3DSA:3.40.50.720 2 247 6.7E-77 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS15180 fb02e249ba6d6a399f0863d90026ec78 250 SUPERFAMILY SSF51735 6 247 2.88E-75 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS15180 fb02e249ba6d6a399f0863d90026ec78 250 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 246 5.9E-56 T 22-04-2016 PP4_RS15180 fb02e249ba6d6a399f0863d90026ec78 250 PANTHER PTHR24322 12 134 1.7E-65 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15180 fb02e249ba6d6a399f0863d90026ec78 250 PANTHER PTHR24322 150 181 1.7E-65 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15180 fb02e249ba6d6a399f0863d90026ec78 250 PANTHER PTHR24322:SF366 12 134 1.7E-65 T 22-04-2016 PP4_RS15180 fb02e249ba6d6a399f0863d90026ec78 250 PANTHER PTHR24322:SF366 150 181 1.7E-65 T 22-04-2016 PP4_RS18130 ed37ef891075718fe7bf68aa61232d96 548 Gene3D G3DSA:2.30.38.10 356 431 7.5E-11 T 22-04-2016 PP4_RS18130 ed37ef891075718fe7bf68aa61232d96 548 PANTHER PTHR24095 28 546 4.5E-168 T 22-04-2016 PP4_RS18130 ed37ef891075718fe7bf68aa61232d96 548 Gene3D G3DSA:3.40.50.980 43 191 1.3E-34 T 22-04-2016 PP4_RS18130 ed37ef891075718fe7bf68aa61232d96 548 Pfam PF13193 AMP-binding enzyme C-terminal domain 447 524 3.6E-25 T 22-04-2016 IPR025110 AMP-binding enzyme C-terminal domain PP4_RS18130 ed37ef891075718fe7bf68aa61232d96 548 Gene3D G3DSA:3.40.50.980 192 343 9.6E-25 T 22-04-2016 PP4_RS18130 ed37ef891075718fe7bf68aa61232d96 548 Pfam PF00501 AMP-binding enzyme 42 437 9.3E-74 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PP4_RS18130 ed37ef891075718fe7bf68aa61232d96 548 ProSitePatterns PS00455 Putative AMP-binding domain signature. 188 199 - T 22-04-2016 IPR020845 AMP-binding, conserved site PP4_RS18130 ed37ef891075718fe7bf68aa61232d96 548 Gene3D G3DSA:3.30.300.30 434 540 7.9E-30 T 22-04-2016 PP4_RS18130 ed37ef891075718fe7bf68aa61232d96 548 SUPERFAMILY SSF56801 28 535 7.46E-139 T 22-04-2016 PP4_RS02925 3bbfe9a11ac08ab82e9719816cb4ee56 448 SMART SM00387 336 443 5.6E-28 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS02925 3bbfe9a11ac08ab82e9719816cb4ee56 448 Pfam PF16750 Sensor domain of 2-component histidine kinase 38 148 1.4E-38 T 22-04-2016 IPR031930 2-component histidine kinase, sensor domain PP4_RS02925 3bbfe9a11ac08ab82e9719816cb4ee56 448 SUPERFAMILY SSF47384 215 291 1.92E-10 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS02925 3bbfe9a11ac08ab82e9719816cb4ee56 448 Pfam PF00512 His Kinase A (phospho-acceptor) domain 233 290 6.9E-7 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS02925 3bbfe9a11ac08ab82e9719816cb4ee56 448 SMART SM00388 232 291 7.5E-9 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS02925 3bbfe9a11ac08ab82e9719816cb4ee56 448 PANTHER PTHR24423 171 443 5.5E-64 T 22-04-2016 PP4_RS02925 3bbfe9a11ac08ab82e9719816cb4ee56 448 PANTHER PTHR24423 119 153 5.5E-64 T 22-04-2016 PP4_RS02925 3bbfe9a11ac08ab82e9719816cb4ee56 448 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 340 441 6.1E-16 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS02925 3bbfe9a11ac08ab82e9719816cb4ee56 448 SMART SM00304 177 231 3.4E-12 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS02925 3bbfe9a11ac08ab82e9719816cb4ee56 448 Gene3D G3DSA:3.30.565.10 277 442 1.3E-29 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS02925 3bbfe9a11ac08ab82e9719816cb4ee56 448 SUPERFAMILY SSF158472 177 229 5.62E-8 T 22-04-2016 PP4_RS02925 3bbfe9a11ac08ab82e9719816cb4ee56 448 PANTHER PTHR24423:SF477 171 443 5.5E-64 T 22-04-2016 PP4_RS02925 3bbfe9a11ac08ab82e9719816cb4ee56 448 PANTHER PTHR24423:SF477 119 153 5.5E-64 T 22-04-2016 PP4_RS02925 3bbfe9a11ac08ab82e9719816cb4ee56 448 Gene3D G3DSA:1.10.287.130 222 276 5.1E-9 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS02925 3bbfe9a11ac08ab82e9719816cb4ee56 448 PRINTS PR00344 Bacterial sensor protein C-terminal signature 391 401 2.3E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS02925 3bbfe9a11ac08ab82e9719816cb4ee56 448 PRINTS PR00344 Bacterial sensor protein C-terminal signature 427 440 2.3E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS02925 3bbfe9a11ac08ab82e9719816cb4ee56 448 PRINTS PR00344 Bacterial sensor protein C-terminal signature 404 422 2.3E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS02925 3bbfe9a11ac08ab82e9719816cb4ee56 448 PRINTS PR00344 Bacterial sensor protein C-terminal signature 373 387 2.3E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS02925 3bbfe9a11ac08ab82e9719816cb4ee56 448 Pfam PF00672 HAMP domain 161 228 1.7E-15 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS02925 3bbfe9a11ac08ab82e9719816cb4ee56 448 SUPERFAMILY SSF55874 280 441 1.02E-32 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS15215 d5b0e740bc68e86b4e7c3609fe3bd0ec 393 Gene3D G3DSA:3.30.565.10 221 388 1.3E-32 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS15215 d5b0e740bc68e86b4e7c3609fe3bd0ec 393 SMART SM00091 9 75 1.4E-6 T 22-04-2016 IPR000014 PAS domain PP4_RS15215 d5b0e740bc68e86b4e7c3609fe3bd0ec 393 Gene3D G3DSA:3.30.450.20 11 110 2.7E-10 T 22-04-2016 PP4_RS15215 d5b0e740bc68e86b4e7c3609fe3bd0ec 393 Gene3D G3DSA:1.10.287.130 172 220 4.9E-14 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS15215 d5b0e740bc68e86b4e7c3609fe3bd0ec 393 Pfam PF00512 His Kinase A (phospho-acceptor) domain 172 231 6.2E-14 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS15215 d5b0e740bc68e86b4e7c3609fe3bd0ec 393 PRINTS PR00344 Bacterial sensor protein C-terminal signature 316 330 1.2E-7 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS15215 d5b0e740bc68e86b4e7c3609fe3bd0ec 393 PRINTS PR00344 Bacterial sensor protein C-terminal signature 374 387 1.2E-7 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS15215 d5b0e740bc68e86b4e7c3609fe3bd0ec 393 PRINTS PR00344 Bacterial sensor protein C-terminal signature 334 344 1.2E-7 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS15215 d5b0e740bc68e86b4e7c3609fe3bd0ec 393 PRINTS PR00344 Bacterial sensor protein C-terminal signature 350 368 1.2E-7 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS15215 d5b0e740bc68e86b4e7c3609fe3bd0ec 393 PANTHER PTHR24423 166 386 4.7E-56 T 22-04-2016 PP4_RS15215 d5b0e740bc68e86b4e7c3609fe3bd0ec 393 PANTHER PTHR24423 10 137 4.7E-56 T 22-04-2016 PP4_RS15215 d5b0e740bc68e86b4e7c3609fe3bd0ec 393 SUPERFAMILY SSF55785 10 103 4.01E-12 T 22-04-2016 IPR000014 PAS domain PP4_RS15215 d5b0e740bc68e86b4e7c3609fe3bd0ec 393 SMART SM00387 279 390 1.8E-21 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS15215 d5b0e740bc68e86b4e7c3609fe3bd0ec 393 SUPERFAMILY SSF55874 225 386 1.3E-29 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS15215 d5b0e740bc68e86b4e7c3609fe3bd0ec 393 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 280 386 5.6E-17 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS15215 d5b0e740bc68e86b4e7c3609fe3bd0ec 393 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 11 128 6.1E-7 T 22-04-2016 IPR000014 PAS domain PP4_RS15215 d5b0e740bc68e86b4e7c3609fe3bd0ec 393 SUPERFAMILY SSF47384 157 231 1.53E-14 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS15215 d5b0e740bc68e86b4e7c3609fe3bd0ec 393 SMART SM00388 170 235 8.5E-16 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS22105 40b0f024fbd13ccd63287cc3c9c61122 336 SUPERFAMILY SSF161098 197 319 5.07E-21 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS22105 40b0f024fbd13ccd63287cc3c9c61122 336 SUPERFAMILY SSF161098 90 160 5.07E-21 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS22105 40b0f024fbd13ccd63287cc3c9c61122 336 PANTHER PTHR30465:SF0 1 169 1.1E-146 T 22-04-2016 PP4_RS22105 40b0f024fbd13ccd63287cc3c9c61122 336 PANTHER PTHR30465:SF0 190 334 1.1E-146 T 22-04-2016 PP4_RS22105 40b0f024fbd13ccd63287cc3c9c61122 336 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 333 1.4E-45 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS22105 40b0f024fbd13ccd63287cc3c9c61122 336 Gene3D G3DSA:1.10.3720.10 200 325 7.1E-22 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS22105 40b0f024fbd13ccd63287cc3c9c61122 336 Gene3D G3DSA:1.10.3720.10 88 163 7.1E-22 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS22105 40b0f024fbd13ccd63287cc3c9c61122 336 PANTHER PTHR30465 1 169 1.1E-146 T 22-04-2016 PP4_RS22105 40b0f024fbd13ccd63287cc3c9c61122 336 PANTHER PTHR30465 190 334 1.1E-146 T 22-04-2016 PP4_RS21880 286cbc43099d5733090f42d5d928a634 79 PIRSF PIRSF003113 1 79 1.1E-15 T 22-04-2016 IPR002634 BolA protein PP4_RS21880 286cbc43099d5733090f42d5d928a634 79 Gene3D G3DSA:3.30.300.90 2 78 1.9E-19 T 22-04-2016 IPR002634 BolA protein PP4_RS21880 286cbc43099d5733090f42d5d928a634 79 Pfam PF01722 BolA-like protein 23 70 1.4E-8 T 22-04-2016 IPR002634 BolA protein PP4_RS21880 286cbc43099d5733090f42d5d928a634 79 SUPERFAMILY SSF82657 2 77 1.83E-21 T 22-04-2016 IPR002634 BolA protein PP4_RS00220 0ca83cf2ee2b5590098b882246696647 422 PANTHER PTHR10632 11 410 8.6E-165 T 22-04-2016 PP4_RS00220 0ca83cf2ee2b5590098b882246696647 422 SUPERFAMILY SSF51905 208 332 3.25E-29 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS00220 0ca83cf2ee2b5590098b882246696647 422 SUPERFAMILY SSF51905 12 111 3.25E-29 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS00220 0ca83cf2ee2b5590098b882246696647 422 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 13 133 2.6E-9 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS00220 0ca83cf2ee2b5590098b882246696647 422 Gene3D G3DSA:3.50.50.60 12 126 1.2E-50 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS00220 0ca83cf2ee2b5590098b882246696647 422 Gene3D G3DSA:3.50.50.60 269 333 1.2E-50 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS00220 0ca83cf2ee2b5590098b882246696647 422 PANTHER PTHR10632:SF2 11 410 8.6E-165 T 22-04-2016 PP4_RS02255 b3c218aa3668a3f4f4c9fcb296fc5d7f 344 PANTHER PTHR30222 5 343 1.9E-164 T 22-04-2016 PP4_RS02255 b3c218aa3668a3f4f4c9fcb296fc5d7f 344 Gene3D G3DSA:3.40.190.10 139 283 6.4E-36 T 22-04-2016 PP4_RS02255 b3c218aa3668a3f4f4c9fcb296fc5d7f 344 Pfam PF13416 Bacterial extracellular solute-binding protein 45 309 3.5E-46 T 22-04-2016 PP4_RS02255 b3c218aa3668a3f4f4c9fcb296fc5d7f 344 SUPERFAMILY SSF53850 25 340 8.51E-67 T 22-04-2016 PP4_RS02255 b3c218aa3668a3f4f4c9fcb296fc5d7f 344 Gene3D G3DSA:3.40.190.10 24 138 2.4E-6 T 22-04-2016 PP4_RS02255 b3c218aa3668a3f4f4c9fcb296fc5d7f 344 PANTHER PTHR30222:SF2 5 343 1.9E-164 T 22-04-2016 PP4_RS11625 d6d3a13fa14beddffac25e397f605da7 299 PANTHER PTHR10277:SF40 2 295 7.0E-177 T 22-04-2016 PP4_RS11625 d6d3a13fa14beddffac25e397f605da7 299 Pfam PF00682 HMGL-like 7 278 2.5E-53 T 22-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 PP4_RS11625 d6d3a13fa14beddffac25e397f605da7 299 SUPERFAMILY SSF51569 1 290 2.38E-74 T 22-04-2016 PP4_RS11625 d6d3a13fa14beddffac25e397f605da7 299 ProSitePatterns PS01062 Hydroxymethylglutaryl-coenzyme A lyase active site. 233 242 - T 22-04-2016 IPR000138 Hydroxymethylglutaryl-CoA lyase, active site GO:0004419 KEGG: 00072+4.1.3.4|KEGG: 00280+4.1.3.4|KEGG: 00281+4.1.3.4|KEGG: 00650+4.1.3.4|MetaCyc: PWY-5074|UniPathway: UPA00896 PP4_RS11625 d6d3a13fa14beddffac25e397f605da7 299 PANTHER PTHR10277 2 295 7.0E-177 T 22-04-2016 PP4_RS11625 d6d3a13fa14beddffac25e397f605da7 299 Gene3D G3DSA:3.20.20.70 4 291 2.0E-89 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS05635 0f9c894edae700385278ecc411f2152d 185 PANTHER PTHR33747:SF2 7 159 1.4E-31 T 22-04-2016 PP4_RS05635 0f9c894edae700385278ecc411f2152d 185 PANTHER PTHR33747 7 159 1.4E-31 T 22-04-2016 PP4_RS05635 0f9c894edae700385278ecc411f2152d 185 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 9 178 2.7E-30 T 22-04-2016 IPR011978 Uncharacterised protein family UPF0149 PP4_RS05635 0f9c894edae700385278ecc411f2152d 185 SUPERFAMILY SSF101327 11 177 4.18E-19 T 22-04-2016 IPR011978 Uncharacterised protein family UPF0149 PP4_RS05635 0f9c894edae700385278ecc411f2152d 185 Pfam PF03695 Uncharacterised protein family (UPF0149) 11 177 1.0E-26 T 22-04-2016 IPR011978 Uncharacterised protein family UPF0149 PP4_RS14575 9a012c379ce143ffefc5f852f441791c 281 PANTHER PTHR33693:SF3 145 250 3.2E-14 T 22-04-2016 PP4_RS14575 9a012c379ce143ffefc5f852f441791c 281 PANTHER PTHR33693 145 250 3.2E-14 T 22-04-2016 PP4_RS14575 9a012c379ce143ffefc5f852f441791c 281 Pfam PF13566 Domain of unknown function (DUF4130 77 243 1.7E-34 T 22-04-2016 IPR025404 Domain of unknown function DUF4130 PP4_RS14575 9a012c379ce143ffefc5f852f441791c 281 TIGRFAM TIGR03915 SAM_7_link_chp: probable DNA metabolism protein 6 243 1.1E-55 T 22-04-2016 IPR023875 DNA metabolism protein, putative PP4_RS18615 728b46847a6dd6a0462ea87dba861888 332 Pfam PF02424 ApbE family 29 308 8.3E-71 T 22-04-2016 IPR024932 Flavin transferase ApbE GO:0017013 PP4_RS18615 728b46847a6dd6a0462ea87dba861888 332 PANTHER PTHR30040:SF3 3 331 9.5E-128 T 22-04-2016 PP4_RS18615 728b46847a6dd6a0462ea87dba861888 332 SUPERFAMILY SSF143631 23 327 9.15E-87 T 22-04-2016 IPR003374 ApbE-like domain PP4_RS18615 728b46847a6dd6a0462ea87dba861888 332 PIRSF PIRSF006268 1 330 3.7E-74 T 22-04-2016 IPR024932 Flavin transferase ApbE GO:0017013 PP4_RS18615 728b46847a6dd6a0462ea87dba861888 332 PANTHER PTHR30040 3 331 9.5E-128 T 22-04-2016 PP4_RS18970 a10653c1565fa62bdbadd1f9f82fae99 410 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 38 266 2.4E-51 T 22-04-2016 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Reactome: REACT_13 PP4_RS18970 a10653c1565fa62bdbadd1f9f82fae99 410 PANTHER PTHR11482 8 410 5.7E-139 T 22-04-2016 PP4_RS18970 a10653c1565fa62bdbadd1f9f82fae99 410 SUPERFAMILY SSF50621 239 407 3.98E-55 T 22-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 PP4_RS18970 a10653c1565fa62bdbadd1f9f82fae99 410 ProSitePatterns PS00879 Orn/DAP/Arg decarboxylases family 2 signature 2. 204 220 - T 22-04-2016 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site Reactome: REACT_13 PP4_RS18970 a10653c1565fa62bdbadd1f9f82fae99 410 Gene3D G3DSA:3.20.20.10 34 253 7.0E-64 T 22-04-2016 IPR029066 PLP-binding barrel PP4_RS18970 a10653c1565fa62bdbadd1f9f82fae99 410 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 42 60 3.2E-20 T 22-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 PP4_RS18970 a10653c1565fa62bdbadd1f9f82fae99 410 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 173 186 3.2E-20 T 22-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 PP4_RS18970 a10653c1565fa62bdbadd1f9f82fae99 410 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 256 275 3.2E-20 T 22-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 PP4_RS18970 a10653c1565fa62bdbadd1f9f82fae99 410 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 365 378 3.2E-20 T 22-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 PP4_RS18970 a10653c1565fa62bdbadd1f9f82fae99 410 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 62 74 3.2E-20 T 22-04-2016 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Reactome: REACT_13 PP4_RS18970 a10653c1565fa62bdbadd1f9f82fae99 410 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 8 407 3.9E-120 T 22-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PP4_RS18970 a10653c1565fa62bdbadd1f9f82fae99 410 Gene3D G3DSA:2.40.37.10 254 407 3.6E-55 T 22-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 PP4_RS18970 a10653c1565fa62bdbadd1f9f82fae99 410 PANTHER PTHR11482:SF5 8 410 5.7E-139 T 22-04-2016 PP4_RS18970 a10653c1565fa62bdbadd1f9f82fae99 410 SUPERFAMILY SSF51419 16 268 2.75E-57 T 22-04-2016 IPR029066 PLP-binding barrel PP4_RS18970 a10653c1565fa62bdbadd1f9f82fae99 410 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 42 60 - T 22-04-2016 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Reactome: REACT_13 PP4_RS18970 a10653c1565fa62bdbadd1f9f82fae99 410 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 271 383 2.6E-16 T 22-04-2016 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Reactome: REACT_13 PP4_RS18970 a10653c1565fa62bdbadd1f9f82fae99 410 PRINTS PR01181 Diaminopimelate decarboxylase signature 60 77 3.4E-24 T 22-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PP4_RS18970 a10653c1565fa62bdbadd1f9f82fae99 410 PRINTS PR01181 Diaminopimelate decarboxylase signature 148 157 3.4E-24 T 22-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PP4_RS18970 a10653c1565fa62bdbadd1f9f82fae99 410 PRINTS PR01181 Diaminopimelate decarboxylase signature 375 397 3.4E-24 T 22-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PP4_RS18970 a10653c1565fa62bdbadd1f9f82fae99 410 PRINTS PR01181 Diaminopimelate decarboxylase signature 284 302 3.4E-24 T 22-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PP4_RS18970 a10653c1565fa62bdbadd1f9f82fae99 410 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 5 408 37.365 T 22-04-2016 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PP4_RS08260 6d96c861f91c661c92dc4db0f32d617c 690 SUPERFAMILY SSF56935 21 689 6.02E-87 T 22-04-2016 PP4_RS08260 6d96c861f91c661c92dc4db0f32d617c 690 Pfam PF07715 TonB-dependent Receptor Plug Domain 51 161 3.4E-9 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS08260 6d96c861f91c661c92dc4db0f32d617c 690 Gene3D G3DSA:2.40.170.20 165 689 1.3E-67 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS08260 6d96c861f91c661c92dc4db0f32d617c 690 Gene3D G3DSA:2.170.130.10 23 164 1.1E-18 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS08260 6d96c861f91c661c92dc4db0f32d617c 690 Pfam PF00593 TonB dependent receptor 435 688 3.6E-25 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS08260 6d96c861f91c661c92dc4db0f32d617c 690 PANTHER PTHR32552 13 689 1.3E-23 T 22-04-2016 PP4_RS26085 2dcf9973dddb15e2e272690565d6cb20 525 SMART SM00963 225 306 2.3E-25 T 22-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 PP4_RS26085 2dcf9973dddb15e2e272690565d6cb20 525 Pfam PF02881 SRP54-type protein, helical bundle domain 237 302 1.4E-13 T 22-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 PP4_RS26085 2dcf9973dddb15e2e272690565d6cb20 525 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 495 508 - T 22-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 PP4_RS26085 2dcf9973dddb15e2e272690565d6cb20 525 SUPERFAMILY SSF47364 220 300 2.88E-20 T 22-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 PP4_RS26085 2dcf9973dddb15e2e272690565d6cb20 525 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 249 522 62.725 T 22-04-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 PP4_RS26085 2dcf9973dddb15e2e272690565d6cb20 525 SUPERFAMILY SSF52540 274 525 2.6E-53 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26085 2dcf9973dddb15e2e272690565d6cb20 525 SMART SM00962 321 522 3.1E-121 T 22-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 PP4_RS26085 2dcf9973dddb15e2e272690565d6cb20 525 PANTHER PTHR11564:SF16 215 525 1.8E-148 T 22-04-2016 PP4_RS26085 2dcf9973dddb15e2e272690565d6cb20 525 Pfam PF00448 SRP54-type protein, GTPase domain 322 521 1.4E-77 T 22-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 PP4_RS26085 2dcf9973dddb15e2e272690565d6cb20 525 Gene3D G3DSA:1.20.120.140 214 302 3.2E-32 T 22-04-2016 PP4_RS26085 2dcf9973dddb15e2e272690565d6cb20 525 PANTHER PTHR11564 215 525 1.8E-148 T 22-04-2016 PP4_RS26085 2dcf9973dddb15e2e272690565d6cb20 525 Gene3D G3DSA:3.40.50.300 317 521 1.7E-82 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26085 2dcf9973dddb15e2e272690565d6cb20 525 SMART SM00382 320 473 1.8E-9 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS26085 2dcf9973dddb15e2e272690565d6cb20 525 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 251 521 1.2E-110 T 22-04-2016 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 PP4_RS16635 655c35c8e83cb18ee821908fdc205dd9 443 PANTHER PTHR11958 9 428 8.7E-209 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS16635 655c35c8e83cb18ee821908fdc205dd9 443 Gene3D G3DSA:1.10.3860.10 8 409 5.4E-111 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS16635 655c35c8e83cb18ee821908fdc205dd9 443 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 297 320 - T 22-04-2016 IPR018107 Sodium:dicarboxylate symporter, conserved site Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS16635 655c35c8e83cb18ee821908fdc205dd9 443 Hamap MF_01300 C4-dicarboxylate transport protein [dctA]. 2 430 36.907 T 22-04-2016 IPR023954 C4-dicarboxylate transport protein GO:0006835|GO:0015293|GO:0016021 PP4_RS16635 655c35c8e83cb18ee821908fdc205dd9 443 PANTHER PTHR11958:SF49 9 428 8.7E-209 T 22-04-2016 PP4_RS16635 655c35c8e83cb18ee821908fdc205dd9 443 PRINTS PR00173 Glutamate-aspartate symporter signature 147 169 2.1E-31 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS16635 655c35c8e83cb18ee821908fdc205dd9 443 PRINTS PR00173 Glutamate-aspartate symporter signature 74 99 2.1E-31 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS16635 655c35c8e83cb18ee821908fdc205dd9 443 PRINTS PR00173 Glutamate-aspartate symporter signature 294 320 2.1E-31 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS16635 655c35c8e83cb18ee821908fdc205dd9 443 PRINTS PR00173 Glutamate-aspartate symporter signature 3 23 2.1E-31 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS16635 655c35c8e83cb18ee821908fdc205dd9 443 PRINTS PR00173 Glutamate-aspartate symporter signature 357 377 2.1E-31 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS16635 655c35c8e83cb18ee821908fdc205dd9 443 PRINTS PR00173 Glutamate-aspartate symporter signature 44 64 2.1E-31 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS16635 655c35c8e83cb18ee821908fdc205dd9 443 Pfam PF00375 Sodium:dicarboxylate symporter family 9 403 1.9E-106 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS16635 655c35c8e83cb18ee821908fdc205dd9 443 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 36 51 - T 22-04-2016 IPR018107 Sodium:dicarboxylate symporter, conserved site Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS16635 655c35c8e83cb18ee821908fdc205dd9 443 SUPERFAMILY SSF118215 9 403 6.54E-114 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS13900 485ce2dfe500d519be55dd077484d228 254 Pfam PF00005 ABC transporter 29 177 4.9E-35 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS13900 485ce2dfe500d519be55dd077484d228 254 SMART SM00382 38 225 2.9E-16 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS13900 485ce2dfe500d519be55dd077484d228 254 PANTHER PTHR24220 15 254 2.1E-155 T 22-04-2016 PP4_RS13900 485ce2dfe500d519be55dd077484d228 254 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS13900 485ce2dfe500d519be55dd077484d228 254 Gene3D G3DSA:3.40.50.300 13 249 3.4E-85 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS13900 485ce2dfe500d519be55dd077484d228 254 SUPERFAMILY SSF52540 14 247 2.78E-79 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS13900 485ce2dfe500d519be55dd077484d228 254 PIRSF PIRSF039085 10 253 3.9E-109 T 22-04-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 PP4_RS13900 485ce2dfe500d519be55dd077484d228 254 PANTHER PTHR24220:SF474 15 254 2.1E-155 T 22-04-2016 PP4_RS24170 de9db64286166f34b27128023b8bfa84 344 SUPERFAMILY SSF56112 16 271 3.51E-52 T 22-04-2016 IPR011009 Protein kinase-like domain PP4_RS24170 de9db64286166f34b27128023b8bfa84 344 PANTHER PTHR24362 12 270 1.9E-49 T 22-04-2016 PP4_RS24170 de9db64286166f34b27128023b8bfa84 344 Gene3D G3DSA:1.10.510.10 88 265 3.1E-38 T 22-04-2016 PP4_RS24170 de9db64286166f34b27128023b8bfa84 344 SMART SM00220 12 268 3.7E-31 T 22-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 PP4_RS24170 de9db64286166f34b27128023b8bfa84 344 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 127 139 - T 22-04-2016 IPR008271 Serine/threonine-protein kinase, active site GO:0004672|GO:0006468 PP4_RS24170 de9db64286166f34b27128023b8bfa84 344 Gene3D G3DSA:3.30.200.20 7 87 2.2E-15 T 22-04-2016 PP4_RS24170 de9db64286166f34b27128023b8bfa84 344 Pfam PF00069 Protein kinase domain 12 264 6.1E-43 T 22-04-2016 IPR000719 Protein kinase domain GO:0004672|GO:0005524|GO:0006468 PP4_RS15345 839f8b805cbfc94c17a28dfdec0a2ca1 251 Gene3D G3DSA:3.30.1150.10 138 247 8.8E-4 T 22-04-2016 PP4_RS15345 839f8b805cbfc94c17a28dfdec0a2ca1 251 SUPERFAMILY SSF74653 165 242 4.71E-18 T 22-04-2016 PP4_RS15345 839f8b805cbfc94c17a28dfdec0a2ca1 251 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 173 249 4.1E-17 T 22-04-2016 IPR006260 TonB, C-terminal GO:0006810 PP4_RS15345 839f8b805cbfc94c17a28dfdec0a2ca1 251 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 174 250 2.1E-8 T 22-04-2016 IPR006260 TonB, C-terminal GO:0006810 PP4_RS15345 839f8b805cbfc94c17a28dfdec0a2ca1 251 PRINTS PR01374 Gram-negative bacterial tonB protein signature 189 207 3.5E-8 T 22-04-2016 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 PP4_RS15345 839f8b805cbfc94c17a28dfdec0a2ca1 251 PRINTS PR01374 Gram-negative bacterial tonB protein signature 65 75 3.5E-8 T 22-04-2016 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 PP4_RS15345 839f8b805cbfc94c17a28dfdec0a2ca1 251 PRINTS PR01374 Gram-negative bacterial tonB protein signature 168 189 3.5E-8 T 22-04-2016 IPR003538 Gram-negative bacterial TonB protein GO:0015343|GO:0015891|GO:0030288|GO:0031992 PP4_RS18140 294d47c247fdd2e858194cca13df536a 344 SUPERFAMILY SSF46689 283 331 2.91E-11 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS18140 294d47c247fdd2e858194cca13df536a 344 Pfam PF12833 Helix-turn-helix domain 255 330 3.1E-15 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS18140 294d47c247fdd2e858194cca13df536a 344 SMART SM00342 248 330 5.0E-20 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS18140 294d47c247fdd2e858194cca13df536a 344 PANTHER PTHR11019 186 338 2.3E-26 T 22-04-2016 PP4_RS18140 294d47c247fdd2e858194cca13df536a 344 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 29 204 1.5E-39 T 22-04-2016 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal PP4_RS18140 294d47c247fdd2e858194cca13df536a 344 PANTHER PTHR11019:SF52 186 338 2.3E-26 T 22-04-2016 PP4_RS18140 294d47c247fdd2e858194cca13df536a 344 Gene3D G3DSA:1.10.10.60 283 331 2.1E-13 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS18140 294d47c247fdd2e858194cca13df536a 344 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 314 330 2.3E-6 T 22-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PP4_RS18140 294d47c247fdd2e858194cca13df536a 344 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 299 314 2.3E-6 T 22-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PP4_RS25195 7e796782995b7c3e9d1eda8b6a0d82e2 602 TIGRFAM TIGR02203 MsbA_lipidA: lipid A export permease/ATP-binding protein MsbA 16 594 8.3E-264 T 22-04-2016 IPR011917 ABC transporter, lipid A export, MsbA GO:0005524|GO:0016021|GO:0034040 PP4_RS25195 7e796782995b7c3e9d1eda8b6a0d82e2 602 SUPERFAMILY SSF52540 347 590 1.89E-91 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25195 7e796782995b7c3e9d1eda8b6a0d82e2 602 ProSitePatterns PS00211 ABC transporters family signature. 494 508 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS25195 7e796782995b7c3e9d1eda8b6a0d82e2 602 SUPERFAMILY SSF90123 19 340 1.7E-72 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PP4_RS25195 7e796782995b7c3e9d1eda8b6a0d82e2 602 Gene3D G3DSA:3.40.50.300 354 587 3.4E-83 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25195 7e796782995b7c3e9d1eda8b6a0d82e2 602 Pfam PF00664 ABC transporter transmembrane region 32 305 1.4E-47 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PP4_RS25195 7e796782995b7c3e9d1eda8b6a0d82e2 602 Gene3D G3DSA:1.20.1560.10 19 340 8.2E-71 T 22-04-2016 PP4_RS25195 7e796782995b7c3e9d1eda8b6a0d82e2 602 Pfam PF00005 ABC transporter 372 522 7.2E-33 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS25195 7e796782995b7c3e9d1eda8b6a0d82e2 602 PANTHER PTHR24221 3 601 4.3E-224 T 22-04-2016 PP4_RS25195 7e796782995b7c3e9d1eda8b6a0d82e2 602 SMART SM00382 381 568 2.8E-18 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS13170 af9184322ab7bad517b8d3e2561af189 439 Pfam PF00501 AMP-binding enzyme 87 294 4.1E-17 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PP4_RS13170 af9184322ab7bad517b8d3e2561af189 439 TIGRFAM TIGR02155 PA_CoA_ligase: phenylacetate-CoA ligase 16 436 2.0E-218 T 22-04-2016 IPR011880 Phenylacetate-CoA ligase GO:0010124|GO:0047475 KEGG: 00360+6.2.1.30|MetaCyc: PWY-1341|MetaCyc: PWY-6318|MetaCyc: PWY-7716|UniPathway: UPA00930 PP4_RS13170 af9184322ab7bad517b8d3e2561af189 439 Gene3D G3DSA:3.40.50.980 94 250 2.4E-16 T 22-04-2016 PP4_RS13170 af9184322ab7bad517b8d3e2561af189 439 PANTHER PTHR24095:SF175 64 384 6.0E-188 T 22-04-2016 PP4_RS13170 af9184322ab7bad517b8d3e2561af189 439 PANTHER PTHR24095 64 384 6.0E-188 T 22-04-2016 PP4_RS13170 af9184322ab7bad517b8d3e2561af189 439 PIRSF PIRSF006444 5 438 9.6E-210 T 22-04-2016 IPR011880 Phenylacetate-CoA ligase GO:0010124|GO:0047475 KEGG: 00360+6.2.1.30|MetaCyc: PWY-1341|MetaCyc: PWY-6318|MetaCyc: PWY-7716|UniPathway: UPA00930 PP4_RS13170 af9184322ab7bad517b8d3e2561af189 439 SUPERFAMILY SSF56801 27 401 1.7E-62 T 22-04-2016 PP4_RS13170 af9184322ab7bad517b8d3e2561af189 439 Gene3D G3DSA:3.30.300.30 330 436 9.2E-33 T 22-04-2016 PP4_RS13170 af9184322ab7bad517b8d3e2561af189 439 Pfam PF14535 AMP-binding enzyme C-terminal domain 340 436 1.5E-23 T 22-04-2016 IPR028154 AMP-dependent ligase, C-terminal PP4_RS20475 3b630e8520af5b1f4d7a9a192d064ec8 120 SUPERFAMILY SSF50022 13 119 2.07E-30 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 PP4_RS20475 3b630e8520af5b1f4d7a9a192d064ec8 120 Pfam PF13806 Rieske-like [2Fe-2S] domain 13 117 1.8E-34 T 22-04-2016 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 PP4_RS20475 3b630e8520af5b1f4d7a9a192d064ec8 120 Gene3D G3DSA:2.102.10.10 13 119 7.5E-36 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 PP4_RS20475 3b630e8520af5b1f4d7a9a192d064ec8 120 TIGRFAM TIGR02378 nirD_assim_sml: nitrite reductase [NAD(P)H], small subunit 13 118 3.9E-29 T 22-04-2016 IPR012748 Nitrite reductase [NAD(P)H] small subunit, NirD GO:0008942|GO:0042128|GO:0055114 PP4_RS20475 3b630e8520af5b1f4d7a9a192d064ec8 120 PANTHER PTHR40562 6 119 3.4E-21 T 22-04-2016 PP4_RS15290 99e70741c207f5164c70c87846fe1e7c 648 Gene3D G3DSA:1.10.287.130 278 346 1.2E-4 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS15290 99e70741c207f5164c70c87846fe1e7c 648 PANTHER PTHR24423 266 647 7.9E-141 T 22-04-2016 PP4_RS15290 99e70741c207f5164c70c87846fe1e7c 648 PANTHER PTHR24423 121 240 7.9E-141 T 22-04-2016 PP4_RS15290 99e70741c207f5164c70c87846fe1e7c 648 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 133 247 1.3E-5 T 22-04-2016 IPR000014 PAS domain PP4_RS15290 99e70741c207f5164c70c87846fe1e7c 648 SUPERFAMILY SSF55785 126 240 8.58E-10 T 22-04-2016 IPR000014 PAS domain PP4_RS15290 99e70741c207f5164c70c87846fe1e7c 648 Pfam PF08448 PAS fold 143 243 2.0E-6 T 22-04-2016 IPR013656 PAS fold-4 PP4_RS15290 99e70741c207f5164c70c87846fe1e7c 648 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 392 507 4.1E-19 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS15290 99e70741c207f5164c70c87846fe1e7c 648 SMART SM00387 391 509 3.0E-27 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS15290 99e70741c207f5164c70c87846fe1e7c 648 Pfam PF00072 Response regulator receiver domain 8 119 4.3E-20 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS15290 99e70741c207f5164c70c87846fe1e7c 648 Pfam PF00072 Response regulator receiver domain 530 640 5.1E-18 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS15290 99e70741c207f5164c70c87846fe1e7c 648 Pfam PF00512 His Kinase A (phospho-acceptor) domain 283 347 7.3E-7 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS15290 99e70741c207f5164c70c87846fe1e7c 648 Gene3D G3DSA:3.30.565.10 347 510 6.0E-35 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS15290 99e70741c207f5164c70c87846fe1e7c 648 Gene3D G3DSA:3.40.50.2300 3 129 3.2E-31 T 22-04-2016 PP4_RS15290 99e70741c207f5164c70c87846fe1e7c 648 SMART SM00388 282 350 1.3E-5 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS15290 99e70741c207f5164c70c87846fe1e7c 648 Gene3D G3DSA:3.40.50.2300 527 646 8.5E-33 T 22-04-2016 PP4_RS15290 99e70741c207f5164c70c87846fe1e7c 648 PANTHER PTHR24423:SF438 266 647 7.9E-141 T 22-04-2016 PP4_RS15290 99e70741c207f5164c70c87846fe1e7c 648 PANTHER PTHR24423:SF438 121 240 7.9E-141 T 22-04-2016 PP4_RS15290 99e70741c207f5164c70c87846fe1e7c 648 SMART SM00448 5 119 3.7E-30 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS15290 99e70741c207f5164c70c87846fe1e7c 648 SMART SM00448 528 640 2.5E-23 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS15290 99e70741c207f5164c70c87846fe1e7c 648 SUPERFAMILY SSF52172 528 645 6.4E-30 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS15290 99e70741c207f5164c70c87846fe1e7c 648 PRINTS PR00344 Bacterial sensor protein C-terminal signature 456 466 3.6E-15 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS15290 99e70741c207f5164c70c87846fe1e7c 648 PRINTS PR00344 Bacterial sensor protein C-terminal signature 493 506 3.6E-15 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS15290 99e70741c207f5164c70c87846fe1e7c 648 PRINTS PR00344 Bacterial sensor protein C-terminal signature 438 452 3.6E-15 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS15290 99e70741c207f5164c70c87846fe1e7c 648 PRINTS PR00344 Bacterial sensor protein C-terminal signature 469 487 3.6E-15 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS15290 99e70741c207f5164c70c87846fe1e7c 648 SUPERFAMILY SSF55874 341 507 9.69E-38 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS15290 99e70741c207f5164c70c87846fe1e7c 648 Gene3D G3DSA:3.30.450.20 130 241 5.0E-13 T 22-04-2016 PP4_RS15290 99e70741c207f5164c70c87846fe1e7c 648 SUPERFAMILY SSF47384 276 347 9.22E-9 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS15290 99e70741c207f5164c70c87846fe1e7c 648 SUPERFAMILY SSF52172 3 134 7.12E-33 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS22735 a55ce435d1aef5c240c1404436b9c0b4 321 PANTHER PTHR10996:SF91 1 316 2.3E-106 T 22-04-2016 PP4_RS22735 a55ce435d1aef5c240c1404436b9c0b4 321 Gene3D G3DSA:3.40.50.720 17 115 2.3E-29 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS22735 a55ce435d1aef5c240c1404436b9c0b4 321 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 112 290 3.1E-51 T 22-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 PP4_RS22735 a55ce435d1aef5c240c1404436b9c0b4 321 Gene3D G3DSA:3.40.50.720 116 291 2.3E-57 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS22735 a55ce435d1aef5c240c1404436b9c0b4 321 SUPERFAMILY SSF51735 106 291 2.23E-51 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS22735 a55ce435d1aef5c240c1404436b9c0b4 321 PANTHER PTHR10996 1 316 2.3E-106 T 22-04-2016 PP4_RS22735 a55ce435d1aef5c240c1404436b9c0b4 321 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 24 319 1.0E-23 T 22-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 PP4_RS22735 a55ce435d1aef5c240c1404436b9c0b4 321 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 227 243 - T 22-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site PP4_RS22735 a55ce435d1aef5c240c1404436b9c0b4 321 SUPERFAMILY SSF52283 17 141 5.1E-29 T 22-04-2016 PP4_RS10600 c4e85266e551e14d1a1cb89b0e54490c 221 PANTHER PTHR24220 3 217 5.5E-90 T 22-04-2016 PP4_RS10600 c4e85266e551e14d1a1cb89b0e54490c 221 Pfam PF00005 ABC transporter 21 166 3.8E-29 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS10600 c4e85266e551e14d1a1cb89b0e54490c 221 SUPERFAMILY SSF52540 1 216 7.53E-59 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS10600 c4e85266e551e14d1a1cb89b0e54490c 221 SMART SM00382 30 215 3.0E-14 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS10600 c4e85266e551e14d1a1cb89b0e54490c 221 Gene3D G3DSA:3.40.50.300 1 216 1.9E-59 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS10600 c4e85266e551e14d1a1cb89b0e54490c 221 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS10600 c4e85266e551e14d1a1cb89b0e54490c 221 PANTHER PTHR24220:SF430 3 217 5.5E-90 T 22-04-2016 PP4_RS05875 96b0411daa882fad3ab9c5c998b78845 73 PANTHER PTHR34404:SF2 2 59 2.6E-17 T 22-04-2016 PP4_RS05875 96b0411daa882fad3ab9c5c998b78845 73 SMART SM00834 1 42 4.6E-19 T 22-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain PP4_RS05875 96b0411daa882fad3ab9c5c998b78845 73 Pfam PF09723 Zinc ribbon domain 1 40 8.3E-16 T 22-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain PP4_RS05875 96b0411daa882fad3ab9c5c998b78845 73 PANTHER PTHR34404 2 59 2.6E-17 T 22-04-2016 PP4_RS05875 96b0411daa882fad3ab9c5c998b78845 73 TIGRFAM TIGR02605 CxxC_CxxC_SSSS: putative regulatory protein, FmdB family 1 52 1.1E-21 T 22-04-2016 IPR013429 Putative regulatory protein, FmdB, Zinc ribbon domain PP4_RS05185 1aca60f550ed4bf02ba3d09da3f497c0 156 PIRSF PIRSF006181 1 156 1.3E-55 T 22-04-2016 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC PP4_RS05185 1aca60f550ed4bf02ba3d09da3f497c0 156 Pfam PF04073 Aminoacyl-tRNA editing domain 32 140 3.0E-25 T 22-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 PP4_RS05185 1aca60f550ed4bf02ba3d09da3f497c0 156 SUPERFAMILY SSF55826 2 153 9.03E-43 T 22-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 PP4_RS05185 1aca60f550ed4bf02ba3d09da3f497c0 156 Gene3D G3DSA:3.90.960.10 1 153 5.6E-57 T 22-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 PP4_RS05185 1aca60f550ed4bf02ba3d09da3f497c0 156 PANTHER PTHR30411 1 153 4.8E-64 T 22-04-2016 PP4_RS05185 1aca60f550ed4bf02ba3d09da3f497c0 156 PANTHER PTHR30411:SF0 1 153 4.8E-64 T 22-04-2016 PP4_RS05185 1aca60f550ed4bf02ba3d09da3f497c0 156 TIGRFAM TIGR00011 YbaK_EbsC: Cys-tRNA(Pro) deacylase 2 153 1.4E-54 T 22-04-2016 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC PP4_RS26540 6c027ece4af8c73b27260c1934e82551 540 PANTHER PTHR30183:SF2 6 385 1.2E-263 T 22-04-2016 PP4_RS26540 6c027ece4af8c73b27260c1934e82551 540 SUPERFAMILY SSF161098 8 255 3.66E-46 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS26540 6c027ece4af8c73b27260c1934e82551 540 SUPERFAMILY SSF161098 278 530 6.41E-36 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS26540 6c027ece4af8c73b27260c1934e82551 540 Gene3D G3DSA:1.10.3720.10 287 530 4.3E-32 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS26540 6c027ece4af8c73b27260c1934e82551 540 Gene3D G3DSA:1.10.3720.10 11 258 1.1E-38 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS26540 6c027ece4af8c73b27260c1934e82551 540 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 360 520 2.6E-8 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS26540 6c027ece4af8c73b27260c1934e82551 540 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 67 249 2.7E-13 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS26540 6c027ece4af8c73b27260c1934e82551 540 PANTHER PTHR30183:SF2 402 538 1.2E-263 T 22-04-2016 PP4_RS26540 6c027ece4af8c73b27260c1934e82551 540 PANTHER PTHR30183 402 538 1.2E-263 T 22-04-2016 PP4_RS26540 6c027ece4af8c73b27260c1934e82551 540 PANTHER PTHR30183 6 385 1.2E-263 T 22-04-2016 PP4_RS16935 5d0647839d70911a5d09bdb82f6ef321 307 SUPERFAMILY SSF53850 90 293 1.38E-41 T 22-04-2016 PP4_RS16935 5d0647839d70911a5d09bdb82f6ef321 307 SUPERFAMILY SSF46785 2 111 9.53E-16 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16935 5d0647839d70911a5d09bdb82f6ef321 307 PANTHER PTHR30537 1 307 4.7E-131 T 22-04-2016 PP4_RS16935 5d0647839d70911a5d09bdb82f6ef321 307 Gene3D G3DSA:3.40.190.10 178 257 6.3E-19 T 22-04-2016 PP4_RS16935 5d0647839d70911a5d09bdb82f6ef321 307 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 5.8E-14 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16935 5d0647839d70911a5d09bdb82f6ef321 307 Gene3D G3DSA:3.40.190.10 92 177 5.0E-26 T 22-04-2016 PP4_RS16935 5d0647839d70911a5d09bdb82f6ef321 307 PANTHER PTHR30537:SF21 1 307 4.7E-131 T 22-04-2016 PP4_RS16935 5d0647839d70911a5d09bdb82f6ef321 307 Pfam PF03466 LysR substrate binding domain 89 290 4.5E-40 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS16935 5d0647839d70911a5d09bdb82f6ef321 307 Gene3D G3DSA:1.10.10.10 2 84 5.3E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS01760 60ed7190604e1d21633ce9f04210f4fc 100 SUPERFAMILY SSF102829 11 93 4.97E-20 T 22-04-2016 IPR007838 Cell division protein ZapA-like PP4_RS01760 60ed7190604e1d21633ce9f04210f4fc 100 Pfam PF05164 Cell division protein ZapA 11 86 3.8E-16 T 22-04-2016 IPR007838 Cell division protein ZapA-like PP4_RS03970 5784497cc401739ac8b5c27839f31b5b 725 Pfam PF04632 Fusaric acid resistance protein family 30 714 1.1E-214 T 22-04-2016 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0006810 PP4_RS03970 5784497cc401739ac8b5c27839f31b5b 725 PANTHER PTHR30509:SF6 15 267 0.0 T 22-04-2016 PP4_RS03970 5784497cc401739ac8b5c27839f31b5b 725 PANTHER PTHR30509:SF6 340 680 0.0 T 22-04-2016 PP4_RS03970 5784497cc401739ac8b5c27839f31b5b 725 PANTHER PTHR30509 15 267 0.0 T 22-04-2016 PP4_RS03970 5784497cc401739ac8b5c27839f31b5b 725 PANTHER PTHR30509 340 680 0.0 T 22-04-2016 PP4_RS16315 324257a6e82047d40d9acfcf1fcc2a55 86 PANTHER PTHR35370:SF4 34 86 2.2E-19 T 22-04-2016 PP4_RS16315 324257a6e82047d40d9acfcf1fcc2a55 86 Pfam PF05947 Type VI secretion system, ImpG, VasA, VC_A0110 32 85 8.8E-17 T 22-04-2016 IPR010272 Type VI secretion system, TssF-like PP4_RS16315 324257a6e82047d40d9acfcf1fcc2a55 86 PANTHER PTHR35370 34 86 2.2E-19 T 22-04-2016 PP4_RS03195 f316187928a3b7123373543420a21df2 362 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 33 150 2.2E-30 T 22-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 PP4_RS03195 f316187928a3b7123373543420a21df2 362 Gene3D G3DSA:3.40.50.720 184 302 1.3E-35 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS03195 f316187928a3b7123373543420a21df2 362 Gene3D G3DSA:3.90.180.10 7 183 7.6E-53 T 22-04-2016 IPR011032 GroES-like PP4_RS03195 f316187928a3b7123373543420a21df2 362 PANTHER PTHR11695 20 359 2.9E-121 T 22-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PP4_RS03195 f316187928a3b7123373543420a21df2 362 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 78 92 - T 22-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 PP4_RS03195 f316187928a3b7123373543420a21df2 362 PANTHER PTHR11695:SF38 20 359 2.9E-121 T 22-04-2016 PP4_RS03195 f316187928a3b7123373543420a21df2 362 Pfam PF00107 Zinc-binding dehydrogenase 192 318 5.1E-29 T 22-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 PP4_RS03195 f316187928a3b7123373543420a21df2 362 Pfam PF13823 Alcohol dehydrogenase GroES-associated 9 26 3.2E-6 T 22-04-2016 IPR027399 Alcohol dehydrogenase GroES-associated PP4_RS03195 f316187928a3b7123373543420a21df2 362 SUPERFAMILY SSF51735 157 313 1.28E-39 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS03195 f316187928a3b7123373543420a21df2 362 SMART SM00829 16 357 9.5E-4 T 22-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 PP4_RS03195 f316187928a3b7123373543420a21df2 362 SUPERFAMILY SSF50129 9 190 3.04E-48 T 22-04-2016 IPR011032 GroES-like PP4_RS12720 61d81e5d9a6849219dc2d0f444a50d4f 395 Gene3D G3DSA:3.90.550.10 45 274 5.2E-19 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS12720 61d81e5d9a6849219dc2d0f444a50d4f 395 PANTHER PTHR10859 46 391 8.9E-64 T 22-04-2016 PP4_RS12720 61d81e5d9a6849219dc2d0f444a50d4f 395 PANTHER PTHR10859:SF96 46 391 8.9E-64 T 22-04-2016 PP4_RS12720 61d81e5d9a6849219dc2d0f444a50d4f 395 Pfam PF13641 Glycosyltransferase like family 2 45 265 4.4E-21 T 22-04-2016 PP4_RS12720 61d81e5d9a6849219dc2d0f444a50d4f 395 SUPERFAMILY SSF53448 35 275 1.21E-32 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS09685 471d5f12e127f2b520e2fd46b49847a8 331 PANTHER PTHR32196:SF35 26 331 2.0E-112 T 22-04-2016 PP4_RS09685 471d5f12e127f2b520e2fd46b49847a8 331 PANTHER PTHR32196 26 331 2.0E-112 T 22-04-2016 PP4_RS09685 471d5f12e127f2b520e2fd46b49847a8 331 Pfam PF02653 Branched-chain amino acid transport system / permease component 55 317 2.8E-49 T 22-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 PP4_RS03005 8e99f7715b72a84641aefbec0b2ea975 784 Pfam PF14559 Tetratricopeptide repeat 607 656 1.0E-5 T 22-04-2016 PP4_RS03005 8e99f7715b72a84641aefbec0b2ea975 784 SUPERFAMILY SSF48695 52 75 1.56E-67 T 22-04-2016 IPR011031 Multihaem cytochrome PP4_RS03005 8e99f7715b72a84641aefbec0b2ea975 784 SUPERFAMILY SSF48695 120 257 1.56E-67 T 22-04-2016 IPR011031 Multihaem cytochrome PP4_RS03005 8e99f7715b72a84641aefbec0b2ea975 784 SUPERFAMILY SSF48695 300 564 1.56E-67 T 22-04-2016 IPR011031 Multihaem cytochrome PP4_RS03005 8e99f7715b72a84641aefbec0b2ea975 784 Pfam PF13646 HEAT repeats 510 586 1.1E-6 T 22-04-2016 PP4_RS03005 8e99f7715b72a84641aefbec0b2ea975 784 SUPERFAMILY SSF48452 576 767 3.22E-20 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS03005 8e99f7715b72a84641aefbec0b2ea975 784 PANTHER PTHR23083 567 771 7.9E-25 T 22-04-2016 PP4_RS03005 8e99f7715b72a84641aefbec0b2ea975 784 Pfam PF09699 Doubled CXXCH motif (Paired_CXXCH_1) 335 360 3.3E-5 T 22-04-2016 IPR010177 Doubled CXXCH motif UniPathway: UPA00045 PP4_RS03005 8e99f7715b72a84641aefbec0b2ea975 784 Pfam PF13435 Cytochrome c554 and c-prime 194 231 0.0094 T 22-04-2016 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674|UniPathway: UPA00653 PP4_RS03005 8e99f7715b72a84641aefbec0b2ea975 784 SMART SM00028 700 733 1.6E-4 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS03005 8e99f7715b72a84641aefbec0b2ea975 784 SMART SM00028 594 627 0.002 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS03005 8e99f7715b72a84641aefbec0b2ea975 784 SMART SM00028 734 767 85.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS03005 8e99f7715b72a84641aefbec0b2ea975 784 SMART SM00028 628 661 43.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS03005 8e99f7715b72a84641aefbec0b2ea975 784 Gene3D G3DSA:1.25.40.10 580 769 1.2E-35 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS03005 8e99f7715b72a84641aefbec0b2ea975 784 Gene3D G3DSA:1.25.10.10 488 579 3.8E-11 T 22-04-2016 IPR011989 Armadillo-like helical PP4_RS03005 8e99f7715b72a84641aefbec0b2ea975 784 Gene3D G3DSA:1.10.710.10 184 282 1.5E-41 T 22-04-2016 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674|UniPathway: UPA00653 PP4_RS03005 8e99f7715b72a84641aefbec0b2ea975 784 Gene3D G3DSA:1.10.710.10 321 437 1.5E-41 T 22-04-2016 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674|UniPathway: UPA00653 PP4_RS03005 8e99f7715b72a84641aefbec0b2ea975 784 Gene3D G3DSA:1.10.710.10 52 95 1.5E-41 T 22-04-2016 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674|UniPathway: UPA00653 PP4_RS03005 8e99f7715b72a84641aefbec0b2ea975 784 Pfam PF13432 Tetratricopeptide repeat 704 768 9.2E-7 T 22-04-2016 PP4_RS13720 e9c6392308623458e6ffef7f7b8e287a 342 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 115 134 1.0E-7 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS13720 e9c6392308623458e6ffef7f7b8e287a 342 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 37 47 1.0E-7 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS13720 e9c6392308623458e6ffef7f7b8e287a 342 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 56 63 1.0E-7 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS13720 e9c6392308623458e6ffef7f7b8e287a 342 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 139 148 1.0E-7 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS13720 e9c6392308623458e6ffef7f7b8e287a 342 SUPERFAMILY SSF54292 222 339 9.18E-27 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS13720 e9c6392308623458e6ffef7f7b8e287a 342 Gene3D G3DSA:2.40.30.10 6 97 3.5E-25 T 22-04-2016 PP4_RS13720 e9c6392308623458e6ffef7f7b8e287a 342 Pfam PF00970 Oxidoreductase FAD-binding domain 9 105 5.7E-12 T 22-04-2016 IPR008333 Oxidoreductase, FAD-binding domain PP4_RS13720 e9c6392308623458e6ffef7f7b8e287a 342 PANTHER PTHR19370 5 233 2.3E-45 T 22-04-2016 PP4_RS13720 e9c6392308623458e6ffef7f7b8e287a 342 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 258 331 7.2E-15 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS13720 e9c6392308623458e6ffef7f7b8e287a 342 Gene3D G3DSA:3.40.50.80 98 225 6.5E-31 T 22-04-2016 PP4_RS13720 e9c6392308623458e6ffef7f7b8e287a 342 Gene3D G3DSA:3.10.20.30 226 336 1.3E-27 T 22-04-2016 IPR012675 Beta-grasp domain PP4_RS13720 e9c6392308623458e6ffef7f7b8e287a 342 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 289 297 - T 22-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 PP4_RS13720 e9c6392308623458e6ffef7f7b8e287a 342 PRINTS PR00410 Phenol hydroxylase reductase family signature 100 109 4.9E-11 T 22-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PP4_RS13720 e9c6392308623458e6ffef7f7b8e287a 342 PRINTS PR00410 Phenol hydroxylase reductase family signature 37 49 4.9E-11 T 22-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PP4_RS13720 e9c6392308623458e6ffef7f7b8e287a 342 PRINTS PR00410 Phenol hydroxylase reductase family signature 199 207 4.9E-11 T 22-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PP4_RS13720 e9c6392308623458e6ffef7f7b8e287a 342 PRINTS PR00410 Phenol hydroxylase reductase family signature 115 134 4.9E-11 T 22-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PP4_RS13720 e9c6392308623458e6ffef7f7b8e287a 342 SUPERFAMILY SSF52343 96 229 2.36E-31 T 22-04-2016 PP4_RS13720 e9c6392308623458e6ffef7f7b8e287a 342 Pfam PF00175 Oxidoreductase NAD-binding domain 117 212 1.6E-11 T 22-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 PP4_RS13720 e9c6392308623458e6ffef7f7b8e287a 342 SUPERFAMILY SSF63380 4 108 4.29E-25 T 22-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 PP4_RS14220 3fe036cfe138322a4336121b18656ff1 204 Pfam PF00072 Response regulator receiver domain 4 113 8.5E-27 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS14220 3fe036cfe138322a4336121b18656ff1 204 SUPERFAMILY SSF52172 1 155 4.27E-32 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS14220 3fe036cfe138322a4336121b18656ff1 204 Gene3D G3DSA:3.40.50.2300 1 148 3.9E-34 T 22-04-2016 PP4_RS14220 3fe036cfe138322a4336121b18656ff1 204 PANTHER PTHR26402:SF151 2 202 2.7E-55 T 22-04-2016 PP4_RS14220 3fe036cfe138322a4336121b18656ff1 204 Gene3D G3DSA:1.10.10.10 149 201 9.5E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS14220 3fe036cfe138322a4336121b18656ff1 204 SUPERFAMILY SSF46894 134 202 6.8E-17 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS14220 3fe036cfe138322a4336121b18656ff1 204 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 144 158 9.2E-11 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS14220 3fe036cfe138322a4336121b18656ff1 204 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 158 174 9.2E-11 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS14220 3fe036cfe138322a4336121b18656ff1 204 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 174 186 9.2E-11 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS14220 3fe036cfe138322a4336121b18656ff1 204 SMART SM00421 141 198 6.9E-17 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS14220 3fe036cfe138322a4336121b18656ff1 204 SMART SM00448 2 114 3.1E-29 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS14220 3fe036cfe138322a4336121b18656ff1 204 ProSitePatterns PS00622 LuxR-type HTH domain signature. 158 185 - T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS14220 3fe036cfe138322a4336121b18656ff1 204 PANTHER PTHR26402 2 202 2.7E-55 T 22-04-2016 PP4_RS14220 3fe036cfe138322a4336121b18656ff1 204 Pfam PF00196 Bacterial regulatory proteins, luxR family 143 198 3.1E-19 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS27185 b8d75aead7ac3543ec1126146492eb3d 163 PIRSF PIRSF001338 1 162 1.0E-65 T 22-04-2016 IPR024694 N5-carboxyaminoimidazole ribonucleotide mutase PurE GO:0006189|GO:0034023 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234|UniPathway: UPA00074 PP4_RS27185 b8d75aead7ac3543ec1126146492eb3d 163 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 5 158 31.613 T 22-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 PP4_RS27185 b8d75aead7ac3543ec1126146492eb3d 163 Pfam PF00731 AIR carboxylase 5 152 2.0E-63 T 22-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 PP4_RS27185 b8d75aead7ac3543ec1126146492eb3d 163 SMART SM01001 3 154 6.1E-102 T 22-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 PP4_RS27185 b8d75aead7ac3543ec1126146492eb3d 163 PANTHER PTHR23046 1 162 2.0E-87 T 22-04-2016 PP4_RS27185 b8d75aead7ac3543ec1126146492eb3d 163 PANTHER PTHR23046:SF2 1 162 2.0E-87 T 22-04-2016 PP4_RS27185 b8d75aead7ac3543ec1126146492eb3d 163 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 5 159 8.9E-67 T 22-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 PP4_RS27185 b8d75aead7ac3543ec1126146492eb3d 163 SUPERFAMILY SSF52255 4 161 9.42E-67 T 22-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 PP4_RS27185 b8d75aead7ac3543ec1126146492eb3d 163 Gene3D G3DSA:3.40.50.7700 3 159 2.8E-74 T 22-04-2016 IPR000031 Phosphoribosylaminoimidazole carboxylase PurE domain GO:0006189 PP4_RS19490 f12d579694f2b5e800015afcd364aff3 271 SUPERFAMILY SSF56752 4 262 3.66E-69 T 22-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 PP4_RS19490 f12d579694f2b5e800015afcd364aff3 271 TIGRFAM TIGR03461 pabC_Proteo: aminodeoxychorismate lyase 4 262 3.5E-87 T 22-04-2016 IPR017824 Aminodeoxychorismate lyase, class IV GO:0008696|GO:0030170|GO:0046656 KEGG: 00790+4.1.3.38|MetaCyc: PWY-6543|UniPathway: UPA00077 PP4_RS19490 f12d579694f2b5e800015afcd364aff3 271 PANTHER PTHR11825 4 262 1.1E-66 T 22-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 PP4_RS19490 f12d579694f2b5e800015afcd364aff3 271 Pfam PF01063 Amino-transferase class IV 25 246 2.1E-48 T 22-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 PP4_RS19490 f12d579694f2b5e800015afcd364aff3 271 Gene3D G3DSA:3.20.10.10 123 262 1.3E-43 T 22-04-2016 PP4_RS19490 f12d579694f2b5e800015afcd364aff3 271 Gene3D G3DSA:3.30.470.10 4 104 7.5E-26 T 22-04-2016 PP4_RS19490 f12d579694f2b5e800015afcd364aff3 271 PANTHER PTHR11825:SF55 4 262 1.1E-66 T 22-04-2016 PP4_RS12125 f8e35c2a605db5a420da3f8940cdadb3 430 Pfam PF04820 Tryptophan halogenase 76 339 3.1E-12 T 22-04-2016 IPR006905 Tryptophan halogenase PP4_RS12125 f8e35c2a605db5a420da3f8940cdadb3 430 Gene3D G3DSA:3.30.9.10 236 294 1.5E-6 T 22-04-2016 PP4_RS12125 f8e35c2a605db5a420da3f8940cdadb3 430 Gene3D G3DSA:3.50.50.60 371 410 6.3E-17 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS12125 f8e35c2a605db5a420da3f8940cdadb3 430 Gene3D G3DSA:3.50.50.60 2 157 6.3E-17 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS12125 f8e35c2a605db5a420da3f8940cdadb3 430 SUPERFAMILY SSF51905 248 313 1.5E-29 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS12125 f8e35c2a605db5a420da3f8940cdadb3 430 SUPERFAMILY SSF51905 4 154 1.5E-29 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS03730 d9fe8cc6d7685b7fda61340d391ac0b8 186 PANTHER PTHR40057 1 177 2.2E-51 T 22-04-2016 PP4_RS03730 d9fe8cc6d7685b7fda61340d391ac0b8 186 PANTHER PTHR40057:SF1 1 177 2.2E-51 T 22-04-2016 PP4_RS03730 d9fe8cc6d7685b7fda61340d391ac0b8 186 SUPERFAMILY SSF54909 3 103 9.84E-19 T 22-04-2016 IPR011008 Dimeric alpha-beta barrel PP4_RS03730 d9fe8cc6d7685b7fda61340d391ac0b8 186 Gene3D G3DSA:3.30.70.900 6 90 8.4E-12 T 22-04-2016 PP4_RS20465 7861c7139b44046b751db9b9a4bfdc52 310 SUPERFAMILY SSF46785 5 115 1.89E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS20465 7861c7139b44046b751db9b9a4bfdc52 310 SUPERFAMILY SSF53850 97 304 2.17E-32 T 22-04-2016 PP4_RS20465 7861c7139b44046b751db9b9a4bfdc52 310 PANTHER PTHR30346 7 303 5.5E-145 T 22-04-2016 PP4_RS20465 7861c7139b44046b751db9b9a4bfdc52 310 Gene3D G3DSA:3.40.190.10 97 213 3.5E-23 T 22-04-2016 PP4_RS20465 7861c7139b44046b751db9b9a4bfdc52 310 PANTHER PTHR30346:SF11 7 303 5.5E-145 T 22-04-2016 PP4_RS20465 7861c7139b44046b751db9b9a4bfdc52 310 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 67 1.3E-18 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS20465 7861c7139b44046b751db9b9a4bfdc52 310 Gene3D G3DSA:1.10.10.10 6 85 7.8E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS20465 7861c7139b44046b751db9b9a4bfdc52 310 Pfam PF03466 LysR substrate binding domain 96 301 9.7E-29 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS20465 7861c7139b44046b751db9b9a4bfdc52 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 1.6E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS20465 7861c7139b44046b751db9b9a4bfdc52 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 1.6E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS20465 7861c7139b44046b751db9b9a4bfdc52 310 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 1.6E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS20465 7861c7139b44046b751db9b9a4bfdc52 310 TIGRFAM TIGR02424 TF_pcaQ: pca operon transcription factor PcaQ 5 301 2.9E-113 T 22-04-2016 IPR012787 Pca transcription factor PcaQ GO:0003677|GO:0019619|GO:0045893 PP4_RS13285 51eae224da04f4c37e8ccec8b4faf941 148 SUPERFAMILY SSF55785 12 122 6.63E-29 T 22-04-2016 IPR000014 PAS domain PP4_RS13285 51eae224da04f4c37e8ccec8b4faf941 148 Gene3D G3DSA:3.30.450.20 16 122 2.1E-33 T 22-04-2016 PP4_RS13285 51eae224da04f4c37e8ccec8b4faf941 148 SMART SM00086 80 122 1.2E-13 T 22-04-2016 IPR001610 PAC motif PP4_RS13285 51eae224da04f4c37e8ccec8b4faf941 148 Pfam PF13426 PAS domain 16 121 5.9E-21 T 22-04-2016 IPR000014 PAS domain PP4_RS13285 51eae224da04f4c37e8ccec8b4faf941 148 PANTHER PTHR24351 31 119 8.8E-32 T 22-04-2016 PP4_RS13285 51eae224da04f4c37e8ccec8b4faf941 148 SMART SM00091 5 74 0.0047 T 22-04-2016 IPR000014 PAS domain PP4_RS13285 51eae224da04f4c37e8ccec8b4faf941 148 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 5 128 3.3E-22 T 22-04-2016 IPR000014 PAS domain PP4_RS10450 b40d219af8499f62bf001cb45dd5cbd8 395 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 236 370 3.1E-17 T 22-04-2016 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain PP4_RS10450 b40d219af8499f62bf001cb45dd5cbd8 395 SUPERFAMILY SSF47203 232 385 3.06E-22 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS10450 b40d219af8499f62bf001cb45dd5cbd8 395 Gene3D G3DSA:2.40.110.10 128 210 1.8E-14 T 22-04-2016 PP4_RS10450 b40d219af8499f62bf001cb45dd5cbd8 395 SUPERFAMILY SSF56645 16 218 3.01E-38 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 PP4_RS10450 b40d219af8499f62bf001cb45dd5cbd8 395 PANTHER PTHR10909 13 376 2.4E-150 T 22-04-2016 PP4_RS10450 b40d219af8499f62bf001cb45dd5cbd8 395 Gene3D G3DSA:1.10.540.10 9 110 1.4E-29 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS10450 b40d219af8499f62bf001cb45dd5cbd8 395 Gene3D G3DSA:1.20.140.10 211 394 8.0E-57 T 22-04-2016 PP4_RS10450 b40d219af8499f62bf001cb45dd5cbd8 395 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 21 114 5.4E-11 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS10450 b40d219af8499f62bf001cb45dd5cbd8 395 PIRSF PIRSF016578 2 391 7.5E-27 T 22-04-2016 PP4_RS10450 b40d219af8499f62bf001cb45dd5cbd8 395 PANTHER PTHR10909:SF275 13 376 2.4E-150 T 22-04-2016 PP4_RS05800 55fd81fbebdc9362726cd6b78d535bd0 636 PANTHER PTHR30540 2 592 1.2E-243 T 22-04-2016 PP4_RS05800 55fd81fbebdc9362726cd6b78d535bd0 636 Hamap MF_01522 Low affinity potassium transport system protein kup [kup]. 17 636 34.052 T 22-04-2016 IPR023051 Potassium uptake protein, low affinity, Kup PP4_RS05800 55fd81fbebdc9362726cd6b78d535bd0 636 PANTHER PTHR30540:SF7 2 592 1.2E-243 T 22-04-2016 PP4_RS05800 55fd81fbebdc9362726cd6b78d535bd0 636 Pfam PF02705 K+ potassium transporter 26 558 3.7E-209 T 22-04-2016 IPR003855 Potassium transporter GO:0015079|GO:0016020|GO:0071805 PP4_RS00545 df154a7381cbc2472a8116c5d6e31c3b 257 PANTHER PTHR24220:SF466 7 243 5.3E-103 T 22-04-2016 PP4_RS00545 df154a7381cbc2472a8116c5d6e31c3b 257 Pfam PF00005 ABC transporter 21 149 1.0E-25 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS00545 df154a7381cbc2472a8116c5d6e31c3b 257 PANTHER PTHR24220 7 243 5.3E-103 T 22-04-2016 PP4_RS00545 df154a7381cbc2472a8116c5d6e31c3b 257 Gene3D G3DSA:3.40.50.300 2 212 5.6E-54 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS00545 df154a7381cbc2472a8116c5d6e31c3b 257 SMART SM00382 30 199 1.4E-11 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS00545 df154a7381cbc2472a8116c5d6e31c3b 257 ProSitePatterns PS00211 ABC transporters family signature. 122 136 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS00545 df154a7381cbc2472a8116c5d6e31c3b 257 SUPERFAMILY SSF52540 3 214 3.64E-54 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS08580 53d9f4eb2f5f2555fd32b0f1d225cfa0 310 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 106 275 2.6E-43 T 22-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 PP4_RS08580 53d9f4eb2f5f2555fd32b0f1d225cfa0 310 SUPERFAMILY SSF51735 94 276 5.14E-46 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS08580 53d9f4eb2f5f2555fd32b0f1d225cfa0 310 PANTHER PTHR10996:SF114 41 305 1.1E-80 T 22-04-2016 PP4_RS08580 53d9f4eb2f5f2555fd32b0f1d225cfa0 310 SUPERFAMILY SSF52283 15 113 3.74E-6 T 22-04-2016 PP4_RS08580 53d9f4eb2f5f2555fd32b0f1d225cfa0 310 PANTHER PTHR10996 41 305 1.1E-80 T 22-04-2016 PP4_RS08580 53d9f4eb2f5f2555fd32b0f1d225cfa0 310 Gene3D G3DSA:3.40.50.720 95 276 2.6E-50 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS27245 2e36dc5fb86af7ed76967498853af6c1 320 Gene3D G3DSA:1.10.10.10 8 94 9.3E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS27245 2e36dc5fb86af7ed76967498853af6c1 320 PANTHER PTHR30126 7 313 3.6E-131 T 22-04-2016 PP4_RS27245 2e36dc5fb86af7ed76967498853af6c1 320 SUPERFAMILY SSF53850 96 299 6.06E-45 T 22-04-2016 PP4_RS27245 2e36dc5fb86af7ed76967498853af6c1 320 Gene3D G3DSA:3.40.190.10 182 269 1.6E-22 T 22-04-2016 PP4_RS27245 2e36dc5fb86af7ed76967498853af6c1 320 Gene3D G3DSA:3.40.190.10 97 181 5.9E-18 T 22-04-2016 PP4_RS27245 2e36dc5fb86af7ed76967498853af6c1 320 Pfam PF03466 LysR substrate binding domain 94 298 1.3E-49 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS27245 2e36dc5fb86af7ed76967498853af6c1 320 SUPERFAMILY SSF46785 5 85 2.72E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS27245 2e36dc5fb86af7ed76967498853af6c1 320 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 69 6.6E-19 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS27245 2e36dc5fb86af7ed76967498853af6c1 320 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 2.2E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS27245 2e36dc5fb86af7ed76967498853af6c1 320 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 2.2E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS27245 2e36dc5fb86af7ed76967498853af6c1 320 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 2.2E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS27245 2e36dc5fb86af7ed76967498853af6c1 320 PANTHER PTHR30126:SF5 7 313 3.6E-131 T 22-04-2016 PP4_RS09330 73a86e76d56628bb2a16112a6db74d35 220 PANTHER PTHR26402 1 217 9.8E-95 T 22-04-2016 PP4_RS09330 73a86e76d56628bb2a16112a6db74d35 220 Gene3D G3DSA:3.40.50.2300 1 123 1.3E-38 T 22-04-2016 PP4_RS09330 73a86e76d56628bb2a16112a6db74d35 220 SMART SM00862 145 216 1.6E-22 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS09330 73a86e76d56628bb2a16112a6db74d35 220 Gene3D G3DSA:1.10.10.10 124 219 3.2E-26 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS09330 73a86e76d56628bb2a16112a6db74d35 220 SUPERFAMILY SSF52172 1 166 3.13E-39 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS09330 73a86e76d56628bb2a16112a6db74d35 220 Pfam PF00486 Transcriptional regulatory protein, C terminal 147 215 4.8E-20 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS09330 73a86e76d56628bb2a16112a6db74d35 220 SMART SM00448 1 112 5.8E-41 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS09330 73a86e76d56628bb2a16112a6db74d35 220 PANTHER PTHR26402:SF279 1 217 9.8E-95 T 22-04-2016 PP4_RS09330 73a86e76d56628bb2a16112a6db74d35 220 Pfam PF00072 Response regulator receiver domain 4 112 1.5E-26 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS19445 525032c8cb323846ea77ba2a14c7460e 133 Gene3D G3DSA:2.60.120.10 39 124 1.3E-25 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS19445 525032c8cb323846ea77ba2a14c7460e 133 SUPERFAMILY SSF51182 37 118 1.63E-17 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS19445 525032c8cb323846ea77ba2a14c7460e 133 Pfam PF07883 Cupin domain 49 118 3.4E-15 T 22-04-2016 IPR013096 Cupin 2, conserved barrel PP4_RS19445 525032c8cb323846ea77ba2a14c7460e 133 PANTHER PTHR38599:SF1 5 131 7.1E-33 T 22-04-2016 PP4_RS19445 525032c8cb323846ea77ba2a14c7460e 133 PANTHER PTHR38599 5 131 7.1E-33 T 22-04-2016 PP4_RS01870 51aec608314413c6b2e97acd726d3edc 545 Gene3D G3DSA:2.40.50.100 118 193 2.9E-23 T 22-04-2016 PP4_RS01870 51aec608314413c6b2e97acd726d3edc 545 Gene3D G3DSA:2.40.50.100 5 78 2.5E-23 T 22-04-2016 PP4_RS01870 51aec608314413c6b2e97acd726d3edc 545 SUPERFAMILY SSF52777 304 545 9.34E-81 T 22-04-2016 PP4_RS01870 51aec608314413c6b2e97acd726d3edc 545 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 140 169 - T 22-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site PP4_RS01870 51aec608314413c6b2e97acd726d3edc 545 Gene3D G3DSA:3.30.559.10 307 545 1.1E-81 T 22-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain PP4_RS01870 51aec608314413c6b2e97acd726d3edc 545 Pfam PF00364 Biotin-requiring enzyme 118 189 2.6E-23 T 22-04-2016 IPR000089 Biotin/lipoyl attachment PP4_RS01870 51aec608314413c6b2e97acd726d3edc 545 Pfam PF00364 Biotin-requiring enzyme 5 74 1.6E-21 T 22-04-2016 IPR000089 Biotin/lipoyl attachment PP4_RS01870 51aec608314413c6b2e97acd726d3edc 545 TIGRFAM TIGR01348 PDHac_trf_long: dihydrolipoyllysine-residue acetyltransferase 92 545 1.3E-209 T 22-04-2016 IPR006256 Dihydrolipoamide acetyltransferase pyruvate dehydrogenase complex GO:0004742|GO:0006096|GO:0045254 KEGG: 00010+2.3.1.12|KEGG: 00020+2.3.1.12|KEGG: 00620+2.3.1.12 PP4_RS01870 51aec608314413c6b2e97acd726d3edc 545 PANTHER PTHR23151:SF68 21 545 5.7E-247 T 22-04-2016 PP4_RS01870 51aec608314413c6b2e97acd726d3edc 545 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 316 544 2.0E-76 T 22-04-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 PP4_RS01870 51aec608314413c6b2e97acd726d3edc 545 SUPERFAMILY SSF47005 236 282 3.53E-12 T 22-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 PP4_RS01870 51aec608314413c6b2e97acd726d3edc 545 PANTHER PTHR23151 21 545 5.7E-247 T 22-04-2016 PP4_RS01870 51aec608314413c6b2e97acd726d3edc 545 Pfam PF02817 e3 binding domain 243 278 2.9E-14 T 22-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 PP4_RS01870 51aec608314413c6b2e97acd726d3edc 545 SUPERFAMILY SSF51230 116 209 3.27E-23 T 22-04-2016 IPR011053 Single hybrid motif PP4_RS01870 51aec608314413c6b2e97acd726d3edc 545 Gene3D G3DSA:4.10.320.10 239 288 2.2E-19 T 22-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 PP4_RS01870 51aec608314413c6b2e97acd726d3edc 545 SUPERFAMILY SSF51230 5 94 2.09E-23 T 22-04-2016 IPR011053 Single hybrid motif PP4_RS01870 51aec608314413c6b2e97acd726d3edc 545 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 25 54 - T 22-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site PP4_RS09960 eee49be86f9c697f16eb30b251a46f87 292 Pfam PF13280 WYL domain 127 211 2.7E-11 T 22-04-2016 IPR026881 WYL domain PP4_RS09960 eee49be86f9c697f16eb30b251a46f87 292 PIRSF PIRSF015558 2 291 5.7E-84 T 22-04-2016 IPR016634 Transcription regulator, DeoR type, predicted PP4_RS18655 672ff6844ec1c29b296b61530a293df5 202 Pfam PF01726 LexA DNA binding domain 1 65 1.7E-30 T 22-04-2016 IPR006199 LexA repressor, DNA-binding domain GO:0004252|GO:0006508 PP4_RS18655 672ff6844ec1c29b296b61530a293df5 202 Pfam PF00717 Peptidase S24-like 118 184 4.2E-14 T 22-04-2016 IPR019759 Peptidase S24/S26A/S26B PP4_RS18655 672ff6844ec1c29b296b61530a293df5 202 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 126 137 1.1E-12 T 22-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 PP4_RS18655 672ff6844ec1c29b296b61530a293df5 202 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 154 166 1.1E-12 T 22-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 PP4_RS18655 672ff6844ec1c29b296b61530a293df5 202 PRINTS PR00726 Repressor LexA serine protease (S24) family signature 115 125 1.1E-12 T 22-04-2016 IPR006197 Peptidase S24, LexA-like GO:0003677|GO:0006355 PP4_RS18655 672ff6844ec1c29b296b61530a293df5 202 Hamap MF_00015 LexA repressor [lexA]. 3 202 31.84 T 22-04-2016 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 PP4_RS18655 672ff6844ec1c29b296b61530a293df5 202 SUPERFAMILY SSF51306 80 201 7.5E-37 T 22-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C PP4_RS18655 672ff6844ec1c29b296b61530a293df5 202 TIGRFAM TIGR00498 lexA: repressor LexA 1 202 2.4E-76 T 22-04-2016 IPR006200 Transcription regulator LexA GO:0004252|GO:0009432|GO:0045892 PP4_RS18655 672ff6844ec1c29b296b61530a293df5 202 SUPERFAMILY SSF46785 3 70 1.15E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS18655 672ff6844ec1c29b296b61530a293df5 202 Gene3D G3DSA:1.10.10.10 1 69 8.4E-29 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS18655 672ff6844ec1c29b296b61530a293df5 202 PANTHER PTHR33516:SF2 1 202 1.7E-98 T 22-04-2016 PP4_RS18655 672ff6844ec1c29b296b61530a293df5 202 Gene3D G3DSA:2.10.109.10 80 202 2.8E-45 T 22-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain PP4_RS18655 672ff6844ec1c29b296b61530a293df5 202 PANTHER PTHR33516 1 202 1.7E-98 T 22-04-2016 PP4_RS17935 0c514e645f4995dbbe4ce4cec986062e 239 SUPERFAMILY SSF53254 12 200 2.8E-35 T 22-04-2016 IPR029033 Histidine phosphatase superfamily PP4_RS17935 0c514e645f4995dbbe4ce4cec986062e 239 Gene3D G3DSA:3.40.50.1240 5 201 1.1E-35 T 22-04-2016 IPR029033 Histidine phosphatase superfamily PP4_RS17935 0c514e645f4995dbbe4ce4cec986062e 239 PANTHER PTHR23029 9 204 1.2E-25 T 22-04-2016 PP4_RS17935 0c514e645f4995dbbe4ce4cec986062e 239 SMART SM00855 13 166 9.1E-14 T 22-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 PP4_RS17935 0c514e645f4995dbbe4ce4cec986062e 239 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 15 202 6.8E-39 T 22-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 PP4_RS26435 6da41c7200a372a36216414a22097ba2 362 PANTHER PTHR30469 3 361 6.7E-132 T 22-04-2016 PP4_RS26435 6da41c7200a372a36216414a22097ba2 362 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 46 260 1.9E-14 T 22-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PP4_RS26435 6da41c7200a372a36216414a22097ba2 362 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 33 351 1.3E-67 T 22-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 PP4_RS26435 6da41c7200a372a36216414a22097ba2 362 Gene3D G3DSA:2.40.50.100 59 91 2.2E-15 T 22-04-2016 PP4_RS26435 6da41c7200a372a36216414a22097ba2 362 Gene3D G3DSA:2.40.50.100 166 197 2.2E-15 T 22-04-2016 PP4_RS26435 6da41c7200a372a36216414a22097ba2 362 SUPERFAMILY SSF111369 47 261 1.83E-23 T 22-04-2016 PP4_RS26435 6da41c7200a372a36216414a22097ba2 362 PANTHER PTHR30469:SF7 3 361 6.7E-132 T 22-04-2016 PP4_RS05550 c5577a22ea7cbdcfdd93227b9e8b136f 289 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 42 227 2.6E-17 T 22-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PP4_RS05550 c5577a22ea7cbdcfdd93227b9e8b136f 289 Gene3D G3DSA:2.40.50.100 43 76 5.4E-18 T 22-04-2016 PP4_RS05550 c5577a22ea7cbdcfdd93227b9e8b136f 289 Gene3D G3DSA:2.40.50.100 150 183 5.4E-18 T 22-04-2016 PP4_RS05550 c5577a22ea7cbdcfdd93227b9e8b136f 289 SUPERFAMILY SSF111369 42 242 1.44E-22 T 22-04-2016 PP4_RS05550 c5577a22ea7cbdcfdd93227b9e8b136f 289 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 42 234 3.7E-36 T 22-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 PP4_RS05550 c5577a22ea7cbdcfdd93227b9e8b136f 289 PANTHER PTHR30367:SF3 1 282 4.4E-118 T 22-04-2016 PP4_RS05550 c5577a22ea7cbdcfdd93227b9e8b136f 289 PANTHER PTHR30367 1 282 4.4E-118 T 22-04-2016 PP4_RS13195 911dcc91f63a118bda3f7e2afcb2207f 257 Gene3D G3DSA:1.10.12.10 198 257 2.6E-21 T 22-04-2016 IPR014748 Crontonase, C-terminal PP4_RS13195 911dcc91f63a118bda3f7e2afcb2207f 257 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 98 118 - T 22-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 PP4_RS13195 911dcc91f63a118bda3f7e2afcb2207f 257 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 256 1.1E-73 T 22-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 PP4_RS13195 911dcc91f63a118bda3f7e2afcb2207f 257 Gene3D G3DSA:3.90.226.10 3 197 4.9E-67 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS13195 911dcc91f63a118bda3f7e2afcb2207f 257 SUPERFAMILY SSF52096 9 257 1.46E-80 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS13195 911dcc91f63a118bda3f7e2afcb2207f 257 PANTHER PTHR11941:SF54 1 254 8.4E-105 T 22-04-2016 PP4_RS13195 911dcc91f63a118bda3f7e2afcb2207f 257 PANTHER PTHR11941 1 254 8.4E-105 T 22-04-2016 PP4_RS16420 0c1ca9c370c0839baaff9ae0b58bc81b 288 SUPERFAMILY SSF53850 92 288 4.13E-32 T 22-04-2016 PP4_RS16420 0c1ca9c370c0839baaff9ae0b58bc81b 288 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 1.6E-17 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16420 0c1ca9c370c0839baaff9ae0b58bc81b 288 PANTHER PTHR30126 3 282 2.9E-59 T 22-04-2016 PP4_RS16420 0c1ca9c370c0839baaff9ae0b58bc81b 288 Gene3D G3DSA:3.40.190.10 175 256 1.4E-22 T 22-04-2016 PP4_RS16420 0c1ca9c370c0839baaff9ae0b58bc81b 288 Gene3D G3DSA:3.40.190.10 91 174 8.8E-12 T 22-04-2016 PP4_RS16420 0c1ca9c370c0839baaff9ae0b58bc81b 288 Gene3D G3DSA:1.10.10.10 6 89 4.9E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16420 0c1ca9c370c0839baaff9ae0b58bc81b 288 Pfam PF03466 LysR substrate binding domain 89 287 2.2E-32 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS16420 0c1ca9c370c0839baaff9ae0b58bc81b 288 PANTHER PTHR30126:SF17 3 282 2.9E-59 T 22-04-2016 PP4_RS16420 0c1ca9c370c0839baaff9ae0b58bc81b 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 9.7E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16420 0c1ca9c370c0839baaff9ae0b58bc81b 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 9.7E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16420 0c1ca9c370c0839baaff9ae0b58bc81b 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 9.7E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16420 0c1ca9c370c0839baaff9ae0b58bc81b 288 SUPERFAMILY SSF46785 6 89 1.92E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS21365 e5cef17d1b7536382bf689c161e44e38 247 Pfam PF13098 Thioredoxin-like domain 120 243 8.5E-25 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS21365 e5cef17d1b7536382bf689c161e44e38 247 ProSitePatterns PS00194 Thioredoxin family active site. 128 146 - T 22-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 PP4_RS21365 e5cef17d1b7536382bf689c161e44e38 247 SUPERFAMILY SSF52833 107 242 2.55E-31 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS21365 e5cef17d1b7536382bf689c161e44e38 247 Pfam PF10411 Disulfide bond isomerase protein N-terminus 35 88 1.7E-15 T 22-04-2016 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal PP4_RS21365 e5cef17d1b7536382bf689c161e44e38 247 PANTHER PTHR35272 1 243 6.1E-88 T 22-04-2016 PP4_RS21365 e5cef17d1b7536382bf689c161e44e38 247 Gene3D G3DSA:3.40.30.10 120 242 5.1E-41 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS21365 e5cef17d1b7536382bf689c161e44e38 247 Gene3D G3DSA:3.10.450.70 31 93 4.2E-22 T 22-04-2016 IPR009094 Disulphide bond isomerase, DsbC, N-terminal PP4_RS21365 e5cef17d1b7536382bf689c161e44e38 247 SUPERFAMILY SSF54423 31 92 5.49E-13 T 22-04-2016 IPR018950 Disulphide bond isomerase, DsbC/G, N-terminal PP4_RS21365 e5cef17d1b7536382bf689c161e44e38 247 PANTHER PTHR35272:SF3 1 243 6.1E-88 T 22-04-2016 PP4_RS09995 cab3a5a0b5f4a9947444ef1e519a6e8f 207 Gene3D G3DSA:3.40.30.10 2 92 1.6E-22 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS09995 cab3a5a0b5f4a9947444ef1e519a6e8f 207 Gene3D G3DSA:1.20.1050.10 93 198 6.9E-36 T 22-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like PP4_RS09995 cab3a5a0b5f4a9947444ef1e519a6e8f 207 Pfam PF13417 Glutathione S-transferase, N-terminal domain 8 78 8.9E-12 T 22-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 PP4_RS09995 cab3a5a0b5f4a9947444ef1e519a6e8f 207 SUPERFAMILY SSF52833 1 84 6.41E-21 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS09995 cab3a5a0b5f4a9947444ef1e519a6e8f 207 SUPERFAMILY SSF47616 81 198 1.39E-28 T 22-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like PP4_RS09995 cab3a5a0b5f4a9947444ef1e519a6e8f 207 PANTHER PTHR11260:SF253 2 198 6.2E-71 T 22-04-2016 PP4_RS09995 cab3a5a0b5f4a9947444ef1e519a6e8f 207 Pfam PF00043 Glutathione S-transferase, C-terminal domain 127 196 2.6E-4 T 22-04-2016 IPR004046 Glutathione S-transferase, C-terminal PP4_RS09995 cab3a5a0b5f4a9947444ef1e519a6e8f 207 PANTHER PTHR11260 2 198 6.2E-71 T 22-04-2016 PP4_RS05135 6de8caa4da42645dd34a01f4e8f2fba8 634 SUPERFAMILY SSF103190 80 203 3.14E-13 T 22-04-2016 IPR029151 Periplasmic sensor domain-like PP4_RS05135 6de8caa4da42645dd34a01f4e8f2fba8 634 PRINTS PR00344 Bacterial sensor protein C-terminal signature 585 603 1.1E-11 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS05135 6de8caa4da42645dd34a01f4e8f2fba8 634 PRINTS PR00344 Bacterial sensor protein C-terminal signature 572 582 1.1E-11 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS05135 6de8caa4da42645dd34a01f4e8f2fba8 634 PRINTS PR00344 Bacterial sensor protein C-terminal signature 554 568 1.1E-11 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS05135 6de8caa4da42645dd34a01f4e8f2fba8 634 PRINTS PR00344 Bacterial sensor protein C-terminal signature 609 622 1.1E-11 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS05135 6de8caa4da42645dd34a01f4e8f2fba8 634 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 516 623 1.4E-18 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS05135 6de8caa4da42645dd34a01f4e8f2fba8 634 SUPERFAMILY SSF47384 392 474 3.53E-9 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS05135 6de8caa4da42645dd34a01f4e8f2fba8 634 Gene3D G3DSA:1.10.287.130 407 472 2.0E-4 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS05135 6de8caa4da42645dd34a01f4e8f2fba8 634 Gene3D G3DSA:3.30.565.10 481 629 1.9E-32 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS05135 6de8caa4da42645dd34a01f4e8f2fba8 634 Pfam PF02743 Cache domain 50 302 1.8E-17 T 22-04-2016 IPR033479 Double Cache domain 1 PP4_RS05135 6de8caa4da42645dd34a01f4e8f2fba8 634 SMART SM00388 408 476 8.8E-6 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS05135 6de8caa4da42645dd34a01f4e8f2fba8 634 Gene3D G3DSA:3.30.450.20 99 186 2.0E-4 T 22-04-2016 PP4_RS05135 6de8caa4da42645dd34a01f4e8f2fba8 634 SMART SM00387 515 625 2.3E-26 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS05135 6de8caa4da42645dd34a01f4e8f2fba8 634 Pfam PF00512 His Kinase A (phospho-acceptor) domain 410 474 4.1E-7 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS05135 6de8caa4da42645dd34a01f4e8f2fba8 634 Gene3D G3DSA:3.30.450.20 187 313 5.1E-4 T 22-04-2016 PP4_RS05135 6de8caa4da42645dd34a01f4e8f2fba8 634 SUPERFAMILY SSF55874 481 623 8.51E-33 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS05135 6de8caa4da42645dd34a01f4e8f2fba8 634 PIRSF PIRSF036431 8 632 1.6E-206 T 22-04-2016 IPR017055 Signal transduction histidine kinase, DctB (C4-dicarboxylate transport system regulator) PP4_RS05135 6de8caa4da42645dd34a01f4e8f2fba8 634 PANTHER PTHR24423 385 626 3.5E-113 T 22-04-2016 PP4_RS05135 6de8caa4da42645dd34a01f4e8f2fba8 634 PANTHER PTHR24423 80 137 3.5E-113 T 22-04-2016 PP4_RS05135 6de8caa4da42645dd34a01f4e8f2fba8 634 PANTHER PTHR24423:SF451 385 626 3.5E-113 T 22-04-2016 PP4_RS05135 6de8caa4da42645dd34a01f4e8f2fba8 634 PANTHER PTHR24423:SF451 80 137 3.5E-113 T 22-04-2016 PP4_RS11355 cda34ca47723587a8a4571016ef0bebe 398 Gene3D G3DSA:3.40.640.10 46 316 2.1E-109 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS11355 cda34ca47723587a8a4571016ef0bebe 398 PANTHER PTHR11879:SF7 1 396 1.1E-264 T 22-04-2016 PP4_RS11355 cda34ca47723587a8a4571016ef0bebe 398 Pfam PF00155 Aminotransferase class I and II 27 393 4.7E-83 T 22-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PP4_RS11355 cda34ca47723587a8a4571016ef0bebe 398 PRINTS PR00799 Aspartate aminotransferase signature 176 195 1.6E-35 T 22-04-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 PP4_RS11355 cda34ca47723587a8a4571016ef0bebe 398 PRINTS PR00799 Aspartate aminotransferase signature 342 360 1.6E-35 T 22-04-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 PP4_RS11355 cda34ca47723587a8a4571016ef0bebe 398 PRINTS PR00799 Aspartate aminotransferase signature 207 219 1.6E-35 T 22-04-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 PP4_RS11355 cda34ca47723587a8a4571016ef0bebe 398 PRINTS PR00799 Aspartate aminotransferase signature 274 299 1.6E-35 T 22-04-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 PP4_RS11355 cda34ca47723587a8a4571016ef0bebe 398 SUPERFAMILY SSF53383 1 396 2.04E-117 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS11355 cda34ca47723587a8a4571016ef0bebe 398 PANTHER PTHR11879 1 396 1.1E-264 T 22-04-2016 IPR000796 Aspartate/other aminotransferase GO:0006520|GO:0008483 KEGG: 00220+2.6.1.1|KEGG: 00250+2.6.1.1|KEGG: 00270+2.6.1.1|KEGG: 00330+2.6.1.1|KEGG: 00350+2.6.1.1|KEGG: 00360+2.6.1.1|KEGG: 00400+2.6.1.1|KEGG: 00401+2.6.1.1|KEGG: 00710+2.6.1.1|KEGG: 00950+2.6.1.1|KEGG: 00960+2.6.1.1|MetaCyc: PWY-5913|MetaCyc: PWY-6318|MetaCyc: PWY-6638|MetaCyc: PWY-6642|MetaCyc: PWY-6643|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7383 PP4_RS11355 cda34ca47723587a8a4571016ef0bebe 398 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 244 257 - T 22-04-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 PP4_RS26560 8b5b054229e688c199077810592d0da5 399 Pfam PF01494 FAD binding domain 5 335 5.9E-19 T 22-04-2016 IPR002938 FAD-binding domain GO:0071949 PP4_RS26560 8b5b054229e688c199077810592d0da5 399 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 6 388 3.7E-125 T 22-04-2016 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 UniPathway: UPA00232 PP4_RS26560 8b5b054229e688c199077810592d0da5 399 PANTHER PTHR13789:SF214 1 394 1.3E-163 T 22-04-2016 PP4_RS26560 8b5b054229e688c199077810592d0da5 399 SUPERFAMILY SSF51905 4 178 3.89E-50 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS26560 8b5b054229e688c199077810592d0da5 399 SUPERFAMILY SSF51905 277 392 3.89E-50 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS26560 8b5b054229e688c199077810592d0da5 399 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 5 27 6.7E-12 T 22-04-2016 PP4_RS26560 8b5b054229e688c199077810592d0da5 399 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 281 296 6.7E-12 T 22-04-2016 PP4_RS26560 8b5b054229e688c199077810592d0da5 399 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 296 312 6.7E-12 T 22-04-2016 PP4_RS26560 8b5b054229e688c199077810592d0da5 399 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 157 172 6.7E-12 T 22-04-2016 PP4_RS26560 8b5b054229e688c199077810592d0da5 399 PANTHER PTHR13789 1 394 1.3E-163 T 22-04-2016 PP4_RS26560 8b5b054229e688c199077810592d0da5 399 Gene3D G3DSA:3.50.50.60 269 354 8.6E-35 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS26560 8b5b054229e688c199077810592d0da5 399 Gene3D G3DSA:3.50.50.60 5 183 8.6E-35 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS26560 8b5b054229e688c199077810592d0da5 399 TIGRFAM TIGR01984 UbiH: 2-polyprenyl-6-methoxyphenol 4-hydroxylase 5 388 2.5E-135 T 22-04-2016 IPR011295 2-polyprenyl-6-methoxyphenol 4-hydroxylase GO:0006744|GO:0008681 KEGG: 00130+1.14.13.-|KEGG: 00140+1.14.13.-|KEGG: 00232+1.14.13.-|KEGG: 00261+1.14.13.-|KEGG: 00340+1.14.13.-|KEGG: 00360+1.14.13.-|KEGG: 00361+1.14.13.-|KEGG: 00362+1.14.13.-|KEGG: 00363+1.14.13.-|KEGG: 00380+1.14.13.-|KEGG: 00403+1.14.13.-|KEGG: 00590+1.14.13.-|KEGG: 00591+1.14.13.-|KEGG: 00622+1.14.13.-|KEGG: 00623+1.14.13.-|KEGG: 00624+1.14.13.-|KEGG: 00625+1.14.13.-|KEGG: 00626+1.14.13.-|KEGG: 00627+1.14.13.-|KEGG: 00640+1.14.13.-|KEGG: 00643+1.14.13.-|KEGG: 00830+1.14.13.-|KEGG: 00903+1.14.13.-|KEGG: 00904+1.14.13.-|KEGG: 00905+1.14.13.-|KEGG: 00906+1.14.13.-|KEGG: 00930+1.14.13.-|KEGG: 00940+1.14.13.-|KEGG: 00941+1.14.13.-|KEGG: 00943+1.14.13.-|KEGG: 00945+1.14.13.-|KEGG: 00950+1.14.13.-|KEGG: 00966+1.14.13.-|KEGG: 00980+1.14.13.-|KEGG: 00982+1.14.13.-|KEGG: 00983+1.14.13.-|UniPathway: UPA00232 PP4_RS05060 7403aff80281922b9b0d953fd3634fd9 444 Pfam PF04966 Carbohydrate-selective porin, OprB family 72 444 7.2E-112 T 22-04-2016 IPR007049 Carbohydrate-selective porin OprB GO:0005215|GO:0006810|GO:0016021 PP4_RS05060 7403aff80281922b9b0d953fd3634fd9 444 PANTHER PTHR37944 14 444 4.9E-156 T 22-04-2016 PP4_RS05060 7403aff80281922b9b0d953fd3634fd9 444 PANTHER PTHR37944:SF1 14 444 4.9E-156 T 22-04-2016 PP4_RS04030 af8f183bb2a947ddac1221465ac0b231 484 TIGRFAM TIGR01479 GMP_PMI: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 1 468 1.1E-222 T 22-04-2016 IPR006375 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase GO:0000271|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882|UniPathway: UPA00126 PP4_RS04030 af8f183bb2a947ddac1221465ac0b231 484 PANTHER PTHR12526:SF387 351 468 9.3E-110 T 22-04-2016 PP4_RS04030 af8f183bb2a947ddac1221465ac0b231 484 PANTHER PTHR12526:SF387 151 288 9.3E-110 T 22-04-2016 PP4_RS04030 af8f183bb2a947ddac1221465ac0b231 484 Gene3D G3DSA:3.90.550.10 1 270 3.3E-91 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS04030 af8f183bb2a947ddac1221465ac0b231 484 SUPERFAMILY SSF53448 1 281 1.57E-69 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS04030 af8f183bb2a947ddac1221465ac0b231 484 Pfam PF01050 Mannose-6-phosphate isomerase 314 464 1.1E-74 T 22-04-2016 IPR001538 Mannose-6-phosphate isomerase, type II, C-terminal GO:0005976|GO:0016779 KEGG: 00051+2.7.7.13|KEGG: 00520+2.7.7.13|MetaCyc: PWY-5659|MetaCyc: PWY-882|UniPathway: UPA00126 PP4_RS04030 af8f183bb2a947ddac1221465ac0b231 484 SUPERFAMILY SSF51182 184 469 1.0E-84 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS04030 af8f183bb2a947ddac1221465ac0b231 484 PANTHER PTHR12526 351 468 9.3E-110 T 22-04-2016 PP4_RS04030 af8f183bb2a947ddac1221465ac0b231 484 PANTHER PTHR12526 151 288 9.3E-110 T 22-04-2016 PP4_RS04030 af8f183bb2a947ddac1221465ac0b231 484 Pfam PF00483 Nucleotidyl transferase 3 285 8.1E-73 T 22-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 PP4_RS04030 af8f183bb2a947ddac1221465ac0b231 484 Gene3D G3DSA:2.60.120.10 357 470 1.3E-47 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS10750 f5e07bf62de9d3ad5d8e87de6b39ca8d 373 TIGRFAM TIGR02534 mucon_cyclo: muconate and chloromuconate cycloisomerases 6 372 3.3E-158 T 22-04-2016 IPR013370 Muconate/chloromuconate cycloisomerase GO:0018849|GO:0018850|GO:0030145 PP4_RS10750 f5e07bf62de9d3ad5d8e87de6b39ca8d 373 PANTHER PTHR13794:SF55 6 373 6.2E-119 T 22-04-2016 PP4_RS10750 f5e07bf62de9d3ad5d8e87de6b39ca8d 373 SUPERFAMILY SSF54826 6 130 1.31E-32 T 22-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 PP4_RS10750 f5e07bf62de9d3ad5d8e87de6b39ca8d 373 SMART SM00922 148 245 4.7E-15 T 22-04-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal PP4_RS10750 f5e07bf62de9d3ad5d8e87de6b39ca8d 373 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 104 129 - T 22-04-2016 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 PP4_RS10750 f5e07bf62de9d3ad5d8e87de6b39ca8d 373 Pfam PF13378 Enolase C-terminal domain-like 152 365 1.8E-44 T 22-04-2016 IPR029065 Enolase C-terminal domain-like PP4_RS10750 f5e07bf62de9d3ad5d8e87de6b39ca8d 373 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 9 129 1.3E-38 T 22-04-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain PP4_RS10750 f5e07bf62de9d3ad5d8e87de6b39ca8d 373 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 195 226 - T 22-04-2016 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 PP4_RS10750 f5e07bf62de9d3ad5d8e87de6b39ca8d 373 PANTHER PTHR13794 6 373 6.2E-119 T 22-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 PP4_RS10750 f5e07bf62de9d3ad5d8e87de6b39ca8d 373 Gene3D G3DSA:3.20.20.120 132 360 6.0E-65 T 22-04-2016 IPR029065 Enolase C-terminal domain-like PP4_RS10750 f5e07bf62de9d3ad5d8e87de6b39ca8d 373 SUPERFAMILY SSF51604 117 371 5.76E-64 T 22-04-2016 IPR029065 Enolase C-terminal domain-like PP4_RS10750 f5e07bf62de9d3ad5d8e87de6b39ca8d 373 Gene3D G3DSA:3.30.390.10 5 131 1.5E-44 T 22-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 PP4_RS02590 4ffbbf0158e58a980081ca4afb1bc4ee 166 PANTHER PTHR13718 10 165 7.0E-73 T 22-04-2016 IPR000851 Ribosomal protein S5 GO:0003735|GO:0005840|GO:0006412 PP4_RS02590 4ffbbf0158e58a980081ca4afb1bc4ee 166 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 11 164 4.1E-64 T 22-04-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 PP4_RS02590 4ffbbf0158e58a980081ca4afb1bc4ee 166 Gene3D G3DSA:3.30.230.10 78 160 6.7E-32 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PP4_RS02590 4ffbbf0158e58a980081ca4afb1bc4ee 166 Gene3D G3DSA:3.30.160.20 11 73 3.2E-28 T 22-04-2016 IPR014720 Double-stranded RNA-binding domain PP4_RS02590 4ffbbf0158e58a980081ca4afb1bc4ee 166 Pfam PF03719 Ribosomal protein S5, C-terminal domain 89 158 2.1E-31 T 22-04-2016 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 PP4_RS02590 4ffbbf0158e58a980081ca4afb1bc4ee 166 SUPERFAMILY SSF54768 9 77 6.07E-23 T 22-04-2016 PP4_RS02590 4ffbbf0158e58a980081ca4afb1bc4ee 166 Pfam PF00333 Ribosomal protein S5, N-terminal domain 14 75 2.6E-27 T 22-04-2016 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 PP4_RS02590 4ffbbf0158e58a980081ca4afb1bc4ee 166 SUPERFAMILY SSF54211 81 160 7.59E-26 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PP4_RS02590 4ffbbf0158e58a980081ca4afb1bc4ee 166 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 1 164 33.648 T 22-04-2016 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 PP4_RS02590 4ffbbf0158e58a980081ca4afb1bc4ee 166 ProSitePatterns PS00585 Ribosomal protein S5 signature. 29 61 - T 22-04-2016 IPR018192 Ribosomal protein S5, N-terminal, conserved site PP4_RS21790 1ca814e348132ba4e325ab348437250e 353 PANTHER PTHR33529 1 352 1.9E-131 T 22-04-2016 PP4_RS21790 1ca814e348132ba4e325ab348437250e 353 TIGRFAM TIGR04408 LptG_lptG: LPS export ABC transporter permease LptG 4 351 8.4E-132 T 22-04-2016 IPR030923 LPS export ABC transporter permease LptG GO:0043190|GO:0055085 PP4_RS21790 1ca814e348132ba4e325ab348437250e 353 PANTHER PTHR33529:SF1 1 352 1.9E-131 T 22-04-2016 PP4_RS21790 1ca814e348132ba4e325ab348437250e 353 Pfam PF03739 Predicted permease YjgP/YjgQ family 6 351 2.7E-63 T 22-04-2016 IPR005495 Permease LptG/LptF-related GO:0016021 PP4_RS25015 8c62e8927d4d883bc95ea2048db9cbf4 632 SUPERFAMILY SSF118116 441 630 1.09E-60 T 22-04-2016 PP4_RS25015 8c62e8927d4d883bc95ea2048db9cbf4 632 SMART SM00853 445 588 2.5E-55 T 22-04-2016 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 PP4_RS25015 8c62e8927d4d883bc95ea2048db9cbf4 632 Gene3D G3DSA:3.30.565.10 6 215 8.4E-74 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS25015 8c62e8927d4d883bc95ea2048db9cbf4 632 Pfam PF08676 MutL C terminal dimerisation domain 441 588 4.3E-51 T 22-04-2016 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 PP4_RS25015 8c62e8927d4d883bc95ea2048db9cbf4 632 Gene3D G3DSA:3.30.230.10 223 333 5.4E-39 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PP4_RS25015 8c62e8927d4d883bc95ea2048db9cbf4 632 ProSitePatterns PS00058 DNA mismatch repair proteins mutL / hexB / PMS1 signature. 97 103 - T 22-04-2016 IPR014762 DNA mismatch repair, conserved site PP4_RS25015 8c62e8927d4d883bc95ea2048db9cbf4 632 TIGRFAM TIGR00585 mutl: DNA mismatch repair protein MutL 6 314 6.1E-100 T 22-04-2016 IPR002099 DNA mismatch repair protein family GO:0005524|GO:0006298|GO:0030983 PP4_RS25015 8c62e8927d4d883bc95ea2048db9cbf4 632 SMART SM01340 216 334 3.2E-61 T 22-04-2016 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 PP4_RS25015 8c62e8927d4d883bc95ea2048db9cbf4 632 SUPERFAMILY SSF55874 6 208 2.23E-52 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS25015 8c62e8927d4d883bc95ea2048db9cbf4 632 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 30 128 2.7E-9 T 22-04-2016 PP4_RS25015 8c62e8927d4d883bc95ea2048db9cbf4 632 PANTHER PTHR10073 7 628 7.2E-172 T 22-04-2016 PP4_RS25015 8c62e8927d4d883bc95ea2048db9cbf4 632 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 5 628 29.706 T 22-04-2016 IPR020667 DNA mismatch repair protein, MutL GO:0006298 PP4_RS25015 8c62e8927d4d883bc95ea2048db9cbf4 632 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 218 333 1.1E-39 T 22-04-2016 IPR013507 DNA mismatch repair protein, C-terminal GO:0005524|GO:0006298|GO:0030983 PP4_RS25015 8c62e8927d4d883bc95ea2048db9cbf4 632 SUPERFAMILY SSF54211 195 334 4.55E-39 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PP4_RS26515 9661c842d6494e6b5ffd66eb8ec9b00f 557 PANTHER PTHR30258:SF13 43 555 7.3E-215 T 22-04-2016 PP4_RS26515 9661c842d6494e6b5ffd66eb8ec9b00f 557 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 400 414 - T 22-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 PP4_RS26515 9661c842d6494e6b5ffd66eb8ec9b00f 557 SUPERFAMILY SSF160246 62 153 2.17E-10 T 22-04-2016 PP4_RS26515 9661c842d6494e6b5ffd66eb8ec9b00f 557 Gene3D G3DSA:3.30.450.90 187 305 2.3E-42 T 22-04-2016 PP4_RS26515 9661c842d6494e6b5ffd66eb8ec9b00f 557 PANTHER PTHR30258 43 555 7.3E-215 T 22-04-2016 PP4_RS26515 9661c842d6494e6b5ffd66eb8ec9b00f 557 Pfam PF05157 Type II secretion system (T2SS), protein E, N-terminal domain 62 154 8.2E-12 T 22-04-2016 IPR007831 General secretory system II, protein E, N-terminal GO:0005524|GO:0006810 PP4_RS26515 9661c842d6494e6b5ffd66eb8ec9b00f 557 Gene3D G3DSA:3.40.50.300 313 556 2.4E-79 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26515 9661c842d6494e6b5ffd66eb8ec9b00f 557 SUPERFAMILY SSF52540 191 556 2.88E-83 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26515 9661c842d6494e6b5ffd66eb8ec9b00f 557 Pfam PF00437 Type II/IV secretion system protein 210 472 9.3E-69 T 22-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 PP4_RS11855 00d329dc651f9a8cc7a15c6af7f360ef 666 ProSitePatterns PS01276 Peptidase family U32 signature. 161 179 - T 22-04-2016 IPR001539 Peptidase U32 GO:0006508|GO:0008233 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PP4_RS11855 00d329dc651f9a8cc7a15c6af7f360ef 666 Pfam PF01136 Peptidase family U32 79 304 9.6E-69 T 22-04-2016 IPR001539 Peptidase U32 GO:0006508|GO:0008233 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PP4_RS11855 00d329dc651f9a8cc7a15c6af7f360ef 666 PANTHER PTHR30217:SF10 1 649 6.6E-228 T 22-04-2016 PP4_RS11855 00d329dc651f9a8cc7a15c6af7f360ef 666 PANTHER PTHR30217 1 649 6.6E-228 T 22-04-2016 PP4_RS11855 00d329dc651f9a8cc7a15c6af7f360ef 666 Pfam PF12392 Collagenase 400 512 1.4E-17 T 22-04-2016 IPR020988 Peptidase U32, collagenase KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PP4_RS01855 bdd2f82062a68477f214e03c0737b81a 207 PANTHER PTHR11260:SF256 4 205 1.7E-68 T 22-04-2016 PP4_RS01855 bdd2f82062a68477f214e03c0737b81a 207 Gene3D G3DSA:3.40.30.10 3 95 1.7E-18 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS01855 bdd2f82062a68477f214e03c0737b81a 207 Pfam PF13417 Glutathione S-transferase, N-terminal domain 6 82 1.2E-16 T 22-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 PP4_RS01855 bdd2f82062a68477f214e03c0737b81a 207 Gene3D G3DSA:1.20.1050.10 96 204 1.0E-6 T 22-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like PP4_RS01855 bdd2f82062a68477f214e03c0737b81a 207 PANTHER PTHR11260 4 205 1.7E-68 T 22-04-2016 PP4_RS01855 bdd2f82062a68477f214e03c0737b81a 207 SUPERFAMILY SSF52833 1 88 1.93E-15 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS01855 bdd2f82062a68477f214e03c0737b81a 207 SUPERFAMILY SSF47616 76 205 1.45E-14 T 22-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like PP4_RS07565 e5a59ac89ac372b6ac901f4338ae1590 308 Gene3D G3DSA:3.20.20.370 4 304 2.6E-119 T 22-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 PP4_RS07565 e5a59ac89ac372b6ac901f4338ae1590 308 TIGRFAM TIGR03212 uraD_N-term-dom: putative urate catabolism protein 5 303 5.4E-167 T 22-04-2016 IPR017625 Putative urate catabolism protein PP4_RS07565 e5a59ac89ac372b6ac901f4338ae1590 308 PANTHER PTHR10587:SF72 10 301 1.8E-176 T 22-04-2016 PP4_RS07565 e5a59ac89ac372b6ac901f4338ae1590 308 Pfam PF01522 Polysaccharide deacetylase 76 164 7.0E-18 T 22-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 PP4_RS07565 e5a59ac89ac372b6ac901f4338ae1590 308 SUPERFAMILY SSF88713 4 303 6.95E-99 T 22-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 PP4_RS07565 e5a59ac89ac372b6ac901f4338ae1590 308 PANTHER PTHR10587 10 301 1.8E-176 T 22-04-2016 PP4_RS08485 ea479b720d67f3c24705e57e9bcb7898 683 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 230 244 2.0E-56 T 22-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 PP4_RS08485 ea479b720d67f3c24705e57e9bcb7898 683 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 130 146 2.0E-56 T 22-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 PP4_RS08485 ea479b720d67f3c24705e57e9bcb7898 683 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 149 167 2.0E-56 T 22-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 PP4_RS08485 ea479b720d67f3c24705e57e9bcb7898 683 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 31 44 2.0E-56 T 22-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 PP4_RS08485 ea479b720d67f3c24705e57e9bcb7898 683 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 68 87 2.0E-56 T 22-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 PP4_RS08485 ea479b720d67f3c24705e57e9bcb7898 683 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 179 196 2.0E-56 T 22-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 PP4_RS08485 ea479b720d67f3c24705e57e9bcb7898 683 PANTHER PTHR30161:SF2 1 683 0.0 T 22-04-2016 PP4_RS08485 ea479b720d67f3c24705e57e9bcb7898 683 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 135 158 - T 22-04-2016 IPR025505 FHIPEP conserved site PP4_RS08485 ea479b720d67f3c24705e57e9bcb7898 683 PIRSF PIRSF005419 1 683 4.4E-214 T 22-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 PP4_RS08485 ea479b720d67f3c24705e57e9bcb7898 683 Pfam PF00771 FHIPEP family 24 675 6.7E-215 T 22-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 PP4_RS08485 ea479b720d67f3c24705e57e9bcb7898 683 PANTHER PTHR30161 1 683 0.0 T 22-04-2016 PP4_RS08485 ea479b720d67f3c24705e57e9bcb7898 683 TIGRFAM TIGR01399 hrcV: type III secretion protein, HrcV family 12 682 8.5E-261 T 22-04-2016 IPR006302 Type III secretion protein HrcV GO:0015031|GO:0016021 PP4_RS23740 46e35dcf060c52cdbab954023cf7c69e 378 SMART SM01097 3 133 5.1E-92 T 22-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PP4_RS23740 46e35dcf060c52cdbab954023cf7c69e 378 SUPERFAMILY SSF52317 153 377 4.11E-62 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS23740 46e35dcf060c52cdbab954023cf7c69e 378 PANTHER PTHR11405 187 378 2.8E-243 T 22-04-2016 PP4_RS23740 46e35dcf060c52cdbab954023cf7c69e 378 PANTHER PTHR11405 3 170 2.8E-243 T 22-04-2016 PP4_RS23740 46e35dcf060c52cdbab954023cf7c69e 378 Pfam PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain 5 132 2.8E-52 T 22-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PP4_RS23740 46e35dcf060c52cdbab954023cf7c69e 378 TIGRFAM TIGR01368 CPSaseIIsmall: carbamoyl-phosphate synthase, small subunit 5 375 2.8E-143 T 22-04-2016 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PP4_RS23740 46e35dcf060c52cdbab954023cf7c69e 378 Gene3D G3DSA:3.40.50.880 154 376 3.6E-80 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS23740 46e35dcf060c52cdbab954023cf7c69e 378 Hamap MF_01209 Carbamoyl-phosphate synthase small chain [carA]. 3 378 47.215 T 22-04-2016 IPR006274 Carbamoyl-phosphate synthase, small subunit GO:0004088|GO:0006207|GO:0006541 KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PP4_RS23740 46e35dcf060c52cdbab954023cf7c69e 378 Pfam PF00117 Glutamine amidotransferase class-I 197 372 9.4E-46 T 22-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 PP4_RS23740 46e35dcf060c52cdbab954023cf7c69e 378 PRINTS PR00096 Glutamine amidotransferase superfamily signature 264 275 9.8E-11 T 22-04-2016 PP4_RS23740 46e35dcf060c52cdbab954023cf7c69e 378 PRINTS PR00096 Glutamine amidotransferase superfamily signature 349 362 9.8E-11 T 22-04-2016 PP4_RS23740 46e35dcf060c52cdbab954023cf7c69e 378 PRINTS PR00096 Glutamine amidotransferase superfamily signature 236 245 9.8E-11 T 22-04-2016 PP4_RS23740 46e35dcf060c52cdbab954023cf7c69e 378 SUPERFAMILY SSF52021 4 141 9.55E-57 T 22-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PP4_RS23740 46e35dcf060c52cdbab954023cf7c69e 378 Gene3D G3DSA:3.50.30.20 3 142 2.7E-61 T 22-04-2016 IPR002474 Carbamoyl-phosphate synthase, small subunit N-terminal domain KEGG: 00240+6.3.5.5|KEGG: 00250+6.3.5.5|MetaCyc: PWY-5154|MetaCyc: PWY-5686|MetaCyc: PWY-7400|UniPathway: UPA00068|UniPathway: UPA00070 PP4_RS23740 46e35dcf060c52cdbab954023cf7c69e 378 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 194 208 7.4E-39 T 22-04-2016 PP4_RS23740 46e35dcf060c52cdbab954023cf7c69e 378 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 264 280 7.4E-39 T 22-04-2016 PP4_RS23740 46e35dcf060c52cdbab954023cf7c69e 378 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 281 298 7.4E-39 T 22-04-2016 PP4_RS23740 46e35dcf060c52cdbab954023cf7c69e 378 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 306 317 7.4E-39 T 22-04-2016 PP4_RS23740 46e35dcf060c52cdbab954023cf7c69e 378 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 233 247 7.4E-39 T 22-04-2016 PP4_RS02075 0c3fceef86fa9d4f0eae5c55de15b149 303 TIGRFAM TIGR02108 PQQ_syn_pqqB: coenzyme PQQ biosynthesis protein B 3 303 1.5E-139 T 22-04-2016 IPR011842 Coenzyme PQQ biosynthesis protein B GO:0006810|GO:0018189 UniPathway: UPA00539 PP4_RS02075 0c3fceef86fa9d4f0eae5c55de15b149 303 Gene3D G3DSA:3.60.15.10 1 303 2.2E-128 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS02075 0c3fceef86fa9d4f0eae5c55de15b149 303 Pfam PF12706 Beta-lactamase superfamily domain 50 270 4.0E-51 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS02075 0c3fceef86fa9d4f0eae5c55de15b149 303 SUPERFAMILY SSF56281 1 303 8.98E-69 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS02075 0c3fceef86fa9d4f0eae5c55de15b149 303 Hamap MF_00653 Coenzyme PQQ synthesis protein B [pqqB]. 1 303 179.089 T 22-04-2016 IPR011842 Coenzyme PQQ biosynthesis protein B GO:0006810|GO:0018189 UniPathway: UPA00539 PP4_RS18820 178dc37624727400898c9d598ca52a1c 79 Pfam PF05768 Glutaredoxin-like domain (DUF836) 5 77 3.6E-16 T 22-04-2016 IPR008554 Glutaredoxin-like PP4_RS18820 178dc37624727400898c9d598ca52a1c 79 Gene3D G3DSA:3.40.30.10 4 78 6.2E-23 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS18820 178dc37624727400898c9d598ca52a1c 79 PANTHER PTHR34386 1 77 3.5E-25 T 22-04-2016 PP4_RS18820 178dc37624727400898c9d598ca52a1c 79 PANTHER PTHR34386:SF2 1 77 3.5E-25 T 22-04-2016 PP4_RS18820 178dc37624727400898c9d598ca52a1c 79 SUPERFAMILY SSF52833 5 79 1.17E-12 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS13065 4e3192e6bdf8a07a76ddd8895f996ac8 443 Pfam PF14518 Iron-containing redox enzyme 100 265 1.2E-29 T 22-04-2016 IPR028201 PqqC-like protein PP4_RS13065 4e3192e6bdf8a07a76ddd8895f996ac8 443 SMART SM01236 131 228 4.2E-25 T 22-04-2016 PP4_RS03645 7b7a3c81d758b66534dfe823e9faed36 139 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 3 134 29.907 T 22-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 PP4_RS03645 7b7a3c81d758b66534dfe823e9faed36 139 SUPERFAMILY SSF81330 13 127 6.67E-35 T 22-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 PP4_RS03645 7b7a3c81d758b66534dfe823e9faed36 139 ProSitePatterns PS01327 Large-conductance mechanosensitive channels mscL family signature. 13 26 - T 22-04-2016 IPR019823 Large-conductance mechanosensitive channel, conserved site PP4_RS03645 7b7a3c81d758b66534dfe823e9faed36 139 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 3 131 2.8E-44 T 22-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 PP4_RS03645 7b7a3c81d758b66534dfe823e9faed36 139 PANTHER PTHR30266:SF2 1 134 3.8E-55 T 22-04-2016 PP4_RS03645 7b7a3c81d758b66534dfe823e9faed36 139 PANTHER PTHR30266 1 134 3.8E-55 T 22-04-2016 PP4_RS03645 7b7a3c81d758b66534dfe823e9faed36 139 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 3 133 2.6E-49 T 22-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 PP4_RS03645 7b7a3c81d758b66534dfe823e9faed36 139 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 93 102 6.6E-13 T 22-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 PP4_RS03645 7b7a3c81d758b66534dfe823e9faed36 139 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 84 92 6.6E-13 T 22-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 PP4_RS03645 7b7a3c81d758b66534dfe823e9faed36 139 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 6 20 6.6E-13 T 22-04-2016 IPR001185 Large-conductance mechanosensitive channel GO:0005216|GO:0006810|GO:0016021 PP4_RS22595 3e9093932704722941e523d544d4f180 87 ProDom PD056452 UNCHARACTERIZED BACTERIA SIMILAR YPEB CYTOPLASMIC VCA0163 PRODUCT STM2426 GENE YPO2988 14 70 9.0E-26 T 22-04-2016 IPR024530 Putative quorum-sensing-regulated virulence factor PP4_RS22595 3e9093932704722941e523d544d4f180 87 PANTHER PTHR40613:SF1 1 71 3.5E-22 T 22-04-2016 PP4_RS22595 3e9093932704722941e523d544d4f180 87 PANTHER PTHR40613 1 71 3.5E-22 T 22-04-2016 PP4_RS22595 3e9093932704722941e523d544d4f180 87 Pfam PF12843 Putative quorum-sensing-regulated virulence factor 3 67 2.2E-29 T 22-04-2016 IPR024530 Putative quorum-sensing-regulated virulence factor PP4_RS22655 63a40519c0d5e4a36bdc2d5a4b4a8bd1 438 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 36 141 1.4E-10 T 22-04-2016 IPR000014 PAS domain PP4_RS22655 63a40519c0d5e4a36bdc2d5a4b4a8bd1 438 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 141 263 3.3E-13 T 22-04-2016 IPR000014 PAS domain PP4_RS22655 63a40519c0d5e4a36bdc2d5a4b4a8bd1 438 SUPERFAMILY SSF58104 240 435 7.98E-51 T 22-04-2016 PP4_RS22655 63a40519c0d5e4a36bdc2d5a4b4a8bd1 438 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 285 433 8.2E-39 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS22655 63a40519c0d5e4a36bdc2d5a4b4a8bd1 438 Pfam PF08448 PAS fold 31 135 3.6E-10 T 22-04-2016 IPR013656 PAS fold-4 PP4_RS22655 63a40519c0d5e4a36bdc2d5a4b4a8bd1 438 SMART SM00283 246 433 4.2E-17 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS22655 63a40519c0d5e4a36bdc2d5a4b4a8bd1 438 PANTHER PTHR24422 7 438 2.8E-111 T 22-04-2016 PP4_RS22655 63a40519c0d5e4a36bdc2d5a4b4a8bd1 438 PANTHER PTHR24422:SF10 7 438 2.8E-111 T 22-04-2016 PP4_RS22655 63a40519c0d5e4a36bdc2d5a4b4a8bd1 438 Gene3D G3DSA:3.30.450.20 153 251 2.5E-18 T 22-04-2016 PP4_RS22655 63a40519c0d5e4a36bdc2d5a4b4a8bd1 438 Gene3D G3DSA:3.30.450.20 31 133 4.7E-17 T 22-04-2016 PP4_RS22655 63a40519c0d5e4a36bdc2d5a4b4a8bd1 438 Pfam PF08447 PAS fold 165 250 9.3E-13 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 PP4_RS22655 63a40519c0d5e4a36bdc2d5a4b4a8bd1 438 Gene3D G3DSA:1.10.287.950 252 435 1.0E-44 T 22-04-2016 PP4_RS22655 63a40519c0d5e4a36bdc2d5a4b4a8bd1 438 SMART SM00086 215 257 4.2 T 22-04-2016 IPR001610 PAC motif PP4_RS22655 63a40519c0d5e4a36bdc2d5a4b4a8bd1 438 SMART SM00086 93 135 4.2 T 22-04-2016 IPR001610 PAC motif PP4_RS22655 63a40519c0d5e4a36bdc2d5a4b4a8bd1 438 SUPERFAMILY SSF55785 30 134 8.03E-16 T 22-04-2016 IPR000014 PAS domain PP4_RS22655 63a40519c0d5e4a36bdc2d5a4b4a8bd1 438 SUPERFAMILY SSF55785 153 257 8.9E-20 T 22-04-2016 IPR000014 PAS domain PP4_RS21380 b1a7b482f4f6055e0a7f5014a9029547 135 Gene3D G3DSA:3.10.129.10 4 128 2.5E-43 T 22-04-2016 IPR029069 HotDog domain PP4_RS21380 b1a7b482f4f6055e0a7f5014a9029547 135 SUPERFAMILY SSF54637 18 131 4.45E-36 T 22-04-2016 IPR029069 HotDog domain PP4_RS21380 b1a7b482f4f6055e0a7f5014a9029547 135 PANTHER PTHR11049:SF8 4 134 2.3E-76 T 22-04-2016 PP4_RS21380 b1a7b482f4f6055e0a7f5014a9029547 135 PANTHER PTHR11049 4 134 2.3E-76 T 22-04-2016 PP4_RS21380 b1a7b482f4f6055e0a7f5014a9029547 135 Pfam PF03061 Thioesterase superfamily 31 103 1.6E-16 T 22-04-2016 IPR006683 Thioesterase domain PP4_RS00895 9b50ff66bed6c644c75fa8120237e3bb 695 Pfam PF04632 Fusaric acid resistance protein family 13 673 1.8E-184 T 22-04-2016 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0006810 PP4_RS00895 9b50ff66bed6c644c75fa8120237e3bb 695 PANTHER PTHR30509 317 653 2.2E-84 T 22-04-2016 PP4_RS00895 9b50ff66bed6c644c75fa8120237e3bb 695 PANTHER PTHR30509 8 253 2.2E-84 T 22-04-2016 PP4_RS00895 9b50ff66bed6c644c75fa8120237e3bb 695 PANTHER PTHR30509:SF1 317 653 2.2E-84 T 22-04-2016 PP4_RS00895 9b50ff66bed6c644c75fa8120237e3bb 695 PANTHER PTHR30509:SF1 8 253 2.2E-84 T 22-04-2016 PP4_RS18035 d62aa4307c244ff1d4039ce952dc09df 256 ProSitePatterns PS00708 Prolyl endopeptidase family serine active site. 84 114 - T 22-04-2016 IPR002471 Peptidase S9, serine active site GO:0004252|GO:0006508 PP4_RS18035 d62aa4307c244ff1d4039ce952dc09df 256 SUPERFAMILY SSF53474 3 238 2.03E-37 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS18035 d62aa4307c244ff1d4039ce952dc09df 256 Gene3D G3DSA:3.40.50.1820 3 238 2.6E-34 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS18035 d62aa4307c244ff1d4039ce952dc09df 256 PANTHER PTHR22946 3 244 3.8E-42 T 22-04-2016 PP4_RS18035 d62aa4307c244ff1d4039ce952dc09df 256 Pfam PF00326 Prolyl oligopeptidase family 52 239 5.1E-12 T 22-04-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 PP4_RS18035 d62aa4307c244ff1d4039ce952dc09df 256 PANTHER PTHR22946:SF0 3 244 3.8E-42 T 22-04-2016 PP4_RS17810 37464bc35b9b4954b6b8f4021b1790db 197 SUPERFAMILY SSF51182 97 184 2.65E-15 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS17810 37464bc35b9b4954b6b8f4021b1790db 197 SUPERFAMILY SSF47413 9 73 2.36E-15 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS17810 37464bc35b9b4954b6b8f4021b1790db 197 PANTHER PTHR10245:SF30 13 183 1.1E-24 T 22-04-2016 PP4_RS17810 37464bc35b9b4954b6b8f4021b1790db 197 Gene3D G3DSA:1.10.260.40 13 112 5.7E-19 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS17810 37464bc35b9b4954b6b8f4021b1790db 197 Pfam PF13560 Helix-turn-helix domain 14 70 6.2E-12 T 22-04-2016 PP4_RS17810 37464bc35b9b4954b6b8f4021b1790db 197 Pfam PF07883 Cupin domain 134 191 1.2E-7 T 22-04-2016 IPR013096 Cupin 2, conserved barrel PP4_RS17810 37464bc35b9b4954b6b8f4021b1790db 197 SMART SM00530 16 71 4.0E-13 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS17810 37464bc35b9b4954b6b8f4021b1790db 197 Gene3D G3DSA:2.60.120.10 113 193 5.1E-10 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS17810 37464bc35b9b4954b6b8f4021b1790db 197 PANTHER PTHR10245 13 183 1.1E-24 T 22-04-2016 PP4_RS14530 b54bcb0d1c0cf8206bcbcf92eb1decb7 414 Pfam PF16653 Saccharopine dehydrogenase C-terminal domain 150 396 2.8E-22 T 22-04-2016 IPR032095 Saccharopine dehydrogenase, C-terminal PP4_RS14530 b54bcb0d1c0cf8206bcbcf92eb1decb7 414 Gene3D G3DSA:3.40.50.720 3 199 7.4E-35 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS14530 b54bcb0d1c0cf8206bcbcf92eb1decb7 414 Pfam PF03435 Saccharopine dehydrogenase NADP binding domain 5 146 7.2E-32 T 22-04-2016 IPR005097 Saccharopine dehydrogenase, NADP binding domain GO:0016491|GO:0055114 PP4_RS14530 b54bcb0d1c0cf8206bcbcf92eb1decb7 414 SUPERFAMILY SSF51735 2 155 1.1E-21 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS14530 b54bcb0d1c0cf8206bcbcf92eb1decb7 414 PANTHER PTHR12286:SF6 1 410 8.1E-100 T 22-04-2016 PP4_RS14530 b54bcb0d1c0cf8206bcbcf92eb1decb7 414 PANTHER PTHR12286 1 410 8.1E-100 T 22-04-2016 PP4_RS11995 7c2f62b705e81122ffecea325e27f8c8 306 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 6 301 4.1E-18 T 22-04-2016 IPR020801 Polyketide synthase, acyl transferase domain PP4_RS11995 7c2f62b705e81122ffecea325e27f8c8 306 SUPERFAMILY SSF52151 187 287 1.66E-47 T 22-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 PP4_RS11995 7c2f62b705e81122ffecea325e27f8c8 306 SUPERFAMILY SSF52151 4 120 1.66E-47 T 22-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 PP4_RS11995 7c2f62b705e81122ffecea325e27f8c8 306 Gene3D G3DSA:3.30.70.250 119 185 7.6E-14 T 22-04-2016 PP4_RS11995 7c2f62b705e81122ffecea325e27f8c8 306 Gene3D G3DSA:3.40.366.10 4 114 2.9E-45 T 22-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 PP4_RS11995 7c2f62b705e81122ffecea325e27f8c8 306 Gene3D G3DSA:3.40.366.10 186 288 2.9E-45 T 22-04-2016 IPR001227 Acyl transferase domain GO:0008152|GO:0016740 PP4_RS11995 7c2f62b705e81122ffecea325e27f8c8 306 TIGRFAM TIGR03131 malonate_mdcH: malonate decarboxylase, epsilon subunit 4 294 3.5E-98 T 22-04-2016 IPR017554 Malonate decarboxylase, McdH subunit PP4_RS11995 7c2f62b705e81122ffecea325e27f8c8 306 Pfam PF00698 Acyl transferase domain 5 280 3.1E-25 T 22-04-2016 IPR014043 Acyl transferase PP4_RS11995 7c2f62b705e81122ffecea325e27f8c8 306 PANTHER PTHR10982 1 275 2.8E-72 T 22-04-2016 PP4_RS11995 7c2f62b705e81122ffecea325e27f8c8 306 SUPERFAMILY SSF55048 120 186 2.09E-12 T 22-04-2016 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding GO:0003824|GO:0008152 PP4_RS11995 7c2f62b705e81122ffecea325e27f8c8 306 PIRSF PIRSF000446 1 299 5.2E-58 T 22-04-2016 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388|UniPathway: UPA00094 PP4_RS13520 613d0845f25d00266b4e8157ff15d803 416 Pfam PF00196 Bacterial regulatory proteins, luxR family 327 380 7.2E-6 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS13520 613d0845f25d00266b4e8157ff15d803 416 Gene3D G3DSA:3.30.450.20 185 257 3.3E-5 T 22-04-2016 PP4_RS13520 613d0845f25d00266b4e8157ff15d803 416 SMART SM00421 324 381 1.9E-6 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS13520 613d0845f25d00266b4e8157ff15d803 416 Gene3D G3DSA:1.10.10.10 322 382 6.3E-13 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS13520 613d0845f25d00266b4e8157ff15d803 416 SUPERFAMILY SSF46894 313 382 1.43E-12 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS04250 1bf3efaa39077d24fcec5a8c1e9743ae 192 SMART SM00749 130 192 2.6E-4 T 22-04-2016 IPR014004 Transport-associated and nodulation domain, bacteria PP4_RS04250 1bf3efaa39077d24fcec5a8c1e9743ae 192 SMART SM00749 53 116 39.0 T 22-04-2016 IPR014004 Transport-associated and nodulation domain, bacteria PP4_RS04250 1bf3efaa39077d24fcec5a8c1e9743ae 192 PANTHER PTHR34606 17 192 4.7E-75 T 22-04-2016 PP4_RS04250 1bf3efaa39077d24fcec5a8c1e9743ae 192 Pfam PF04972 BON domain 46 114 3.5E-11 T 22-04-2016 IPR007055 BON domain PP4_RS04250 1bf3efaa39077d24fcec5a8c1e9743ae 192 Pfam PF04972 BON domain 125 190 3.2E-15 T 22-04-2016 IPR007055 BON domain PP4_RS04250 1bf3efaa39077d24fcec5a8c1e9743ae 192 PANTHER PTHR34606:SF4 17 192 4.7E-75 T 22-04-2016 PP4_RS03475 7614e9abeff0312e72b969f55692faee 316 Gene3D G3DSA:3.40.190.10 102 201 1.5E-17 T 22-04-2016 PP4_RS03475 7614e9abeff0312e72b969f55692faee 316 Pfam PF03466 LysR substrate binding domain 100 295 3.9E-30 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS03475 7614e9abeff0312e72b969f55692faee 316 SUPERFAMILY SSF46785 10 121 1.31E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS03475 7614e9abeff0312e72b969f55692faee 316 SUPERFAMILY SSF53850 100 298 4.34E-35 T 22-04-2016 PP4_RS03475 7614e9abeff0312e72b969f55692faee 316 PANTHER PTHR30579:SF3 6 313 1.3E-73 T 22-04-2016 PP4_RS03475 7614e9abeff0312e72b969f55692faee 316 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 13 73 4.4E-15 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS03475 7614e9abeff0312e72b969f55692faee 316 PANTHER PTHR30579 6 313 1.3E-73 T 22-04-2016 PP4_RS03475 7614e9abeff0312e72b969f55692faee 316 Gene3D G3DSA:1.10.10.10 11 93 3.1E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS21080 050d8f2d68ca2a28c4f8c38e8613fc88 344 TIGRFAM TIGR03536 DapD_gpp: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 5 344 2.0E-191 T 22-04-2016 IPR019876 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, gammaproteobacteria KEGG: 00300+2.3.1.117|UniPathway: UPA00034 PP4_RS21080 050d8f2d68ca2a28c4f8c38e8613fc88 344 SUPERFAMILY SSF51161 97 307 1.22E-37 T 22-04-2016 IPR011004 Trimeric LpxA-like PP4_RS21080 050d8f2d68ca2a28c4f8c38e8613fc88 344 Gene3D G3DSA:3.30.60.70 132 172 5.7E-18 T 22-04-2016 IPR032784 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain KEGG: 00300+2.3.1.117|UniPathway: UPA00034 PP4_RS21080 050d8f2d68ca2a28c4f8c38e8613fc88 344 Gene3D G3DSA:2.160.10.10 173 341 1.5E-33 T 22-04-2016 PP4_RS21080 050d8f2d68ca2a28c4f8c38e8613fc88 344 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 254 286 2.3E-12 T 22-04-2016 IPR001451 Hexapeptide repeat PP4_RS21080 050d8f2d68ca2a28c4f8c38e8613fc88 344 Hamap MF_02122 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase [dapD]. 4 341 44.638 T 22-04-2016 IPR026586 Type 2 tetrahydrodipicolinate N-succinyltransferase family GO:0008666 KEGG: 00300+2.3.1.117|UniPathway: UPA00034 PP4_RS21080 050d8f2d68ca2a28c4f8c38e8613fc88 344 Pfam PF14789 Tetrahydrodipicolinate N-succinyltransferase middle 132 172 4.3E-16 T 22-04-2016 IPR032784 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, middle domain KEGG: 00300+2.3.1.117|UniPathway: UPA00034 PP4_RS01370 98d05ff437c419e330e81f4693abc5c5 160 Gene3D G3DSA:2.40.70.10 8 135 2.1E-42 T 22-04-2016 IPR021109 Aspartic peptidase domain PP4_RS01370 98d05ff437c419e330e81f4693abc5c5 160 PANTHER PTHR38037 4 157 4.3E-60 T 22-04-2016 PP4_RS01370 98d05ff437c419e330e81f4693abc5c5 160 Pfam PF05618 Putative ATP-dependant zinc protease 9 147 4.6E-44 T 22-04-2016 PP4_RS01370 98d05ff437c419e330e81f4693abc5c5 160 SUPERFAMILY SSF50630 9 144 1.77E-41 T 22-04-2016 IPR021109 Aspartic peptidase domain PP4_RS08310 b90de13aceed7da86b7fe92bb6558e3e 166 Pfam PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 16 159 3.0E-30 T 22-04-2016 IPR001457 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 GO:0008137|GO:0055114 PP4_RS08310 b90de13aceed7da86b7fe92bb6558e3e 166 PANTHER PTHR33269:SF2 1 166 8.7E-80 T 22-04-2016 PP4_RS08310 b90de13aceed7da86b7fe92bb6558e3e 166 PANTHER PTHR33269 1 166 8.7E-80 T 22-04-2016 PP4_RS02135 5feadcb0b23632d098fe4b94bf9bede2 660 SMART SM00766 521 646 3.0E-39 T 22-04-2016 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 PP4_RS02135 5feadcb0b23632d098fe4b94bf9bede2 660 Gene3D G3DSA:3.40.1360.10 243 367 4.8E-47 T 22-04-2016 PP4_RS02135 5feadcb0b23632d098fe4b94bf9bede2 660 PANTHER PTHR30313 3 433 1.7E-160 T 22-04-2016 PP4_RS02135 5feadcb0b23632d098fe4b94bf9bede2 660 Pfam PF10410 DnaB-helicase binding domain of primase 373 427 2.5E-7 T 22-04-2016 IPR019475 DNA primase, DnaB-helicase binding domain GO:0016779 PP4_RS02135 5feadcb0b23632d098fe4b94bf9bede2 660 Pfam PF13662 Toprim domain 261 327 2.5E-16 T 22-04-2016 IPR006171 Toprim domain PP4_RS02135 5feadcb0b23632d098fe4b94bf9bede2 660 Gene3D G3DSA:3.90.580.10 2 101 1.3E-42 T 22-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 PP4_RS02135 5feadcb0b23632d098fe4b94bf9bede2 660 Pfam PF01807 CHC2 zinc finger 6 101 1.8E-41 T 22-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 PP4_RS02135 5feadcb0b23632d098fe4b94bf9bede2 660 PIRSF PIRSF002811 2 654 2.1E-151 T 22-04-2016 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 PP4_RS02135 5feadcb0b23632d098fe4b94bf9bede2 660 TIGRFAM TIGR01391 dnaG: DNA primase 5 420 1.2E-145 T 22-04-2016 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 PP4_RS02135 5feadcb0b23632d098fe4b94bf9bede2 660 SUPERFAMILY SSF56731 116 427 8.76E-108 T 22-04-2016 PP4_RS02135 5feadcb0b23632d098fe4b94bf9bede2 660 Pfam PF08278 DNA primase DnaG DnaB-binding 525 645 2.4E-27 T 22-04-2016 IPR013173 DNA primase DnaG, DnaB-binding domain GO:0003896|GO:0006269 PP4_RS02135 5feadcb0b23632d098fe4b94bf9bede2 660 Gene3D G3DSA:3.90.980.10 116 242 1.8E-45 T 22-04-2016 IPR013264 DNA primase, catalytic core, N-terminal PP4_RS02135 5feadcb0b23632d098fe4b94bf9bede2 660 SUPERFAMILY SSF57783 4 100 3.4E-38 T 22-04-2016 PP4_RS02135 5feadcb0b23632d098fe4b94bf9bede2 660 Hamap MF_00974 DNA primase [dnaG]. 4 647 30.136 T 22-04-2016 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 PP4_RS02135 5feadcb0b23632d098fe4b94bf9bede2 660 SMART SM00400 36 90 1.6E-34 T 22-04-2016 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 PP4_RS02135 5feadcb0b23632d098fe4b94bf9bede2 660 Gene3D G3DSA:1.20.50.20 371 428 1.7E-21 T 22-04-2016 PP4_RS02135 5feadcb0b23632d098fe4b94bf9bede2 660 Pfam PF08275 DNA primase catalytic core, N-terminal domain 126 254 5.2E-43 T 22-04-2016 IPR013264 DNA primase, catalytic core, N-terminal PP4_RS02135 5feadcb0b23632d098fe4b94bf9bede2 660 SMART SM00493 261 332 2.1E-19 T 22-04-2016 IPR006171 Toprim domain PP4_RS02135 5feadcb0b23632d098fe4b94bf9bede2 660 Gene3D G3DSA:1.10.860.10 506 647 8.5E-39 T 22-04-2016 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal PP4_RS02135 5feadcb0b23632d098fe4b94bf9bede2 660 SUPERFAMILY SSF117023 521 648 1.83E-31 T 22-04-2016 PP4_RS19135 fbff2675520ff8e0ba564685d9d180ec 358 PANTHER PTHR22550:SF12 1 324 5.5E-137 T 22-04-2016 PP4_RS19135 fbff2675520ff8e0ba564685d9d180ec 358 SMART SM00327 89 289 2.8E-28 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS19135 fbff2675520ff8e0ba564685d9d180ec 358 Pfam PF00092 von Willebrand factor type A domain 91 280 5.2E-29 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS19135 fbff2675520ff8e0ba564685d9d180ec 358 PANTHER PTHR22550 1 324 5.5E-137 T 22-04-2016 PP4_RS19135 fbff2675520ff8e0ba564685d9d180ec 358 SUPERFAMILY SSF53300 87 266 6.82E-41 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS19135 fbff2675520ff8e0ba564685d9d180ec 358 Gene3D G3DSA:3.40.50.410 88 283 7.9E-30 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS18605 e0771ecf64d925154af35235c4d9b2a5 238 PANTHER PTHR23344 3 237 7.4E-60 T 22-04-2016 IPR004129 Glycerophosphoryl diester phosphodiesterase GO:0008889 PP4_RS18605 e0771ecf64d925154af35235c4d9b2a5 238 SUPERFAMILY SSF51695 2 236 7.33E-60 T 22-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 PP4_RS18605 e0771ecf64d925154af35235c4d9b2a5 238 Gene3D G3DSA:3.20.20.190 2 237 2.6E-58 T 22-04-2016 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain GO:0006629|GO:0008081 PP4_RS18605 e0771ecf64d925154af35235c4d9b2a5 238 Pfam PF03009 Glycerophosphoryl diester phosphodiesterase family 7 231 1.8E-29 T 22-04-2016 IPR030395 Glycerophosphodiester phosphodiesterase domain GO:0006629|GO:0008081 PP4_RS18605 e0771ecf64d925154af35235c4d9b2a5 238 PANTHER PTHR23344:SF20 3 237 7.4E-60 T 22-04-2016 PP4_RS16150 a7a85ce47ff0e2f86b4bc783a02dc386 197 Gene3D G3DSA:3.40.630.30 1 173 2.0E-25 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS16150 a7a85ce47ff0e2f86b4bc783a02dc386 197 PANTHER PTHR23091 1 81 1.6E-13 T 22-04-2016 PP4_RS16150 a7a85ce47ff0e2f86b4bc783a02dc386 197 PANTHER PTHR23091 103 188 1.6E-13 T 22-04-2016 PP4_RS16150 a7a85ce47ff0e2f86b4bc783a02dc386 197 SUPERFAMILY SSF55729 5 187 5.57E-25 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS16150 a7a85ce47ff0e2f86b4bc783a02dc386 197 Pfam PF00583 Acetyltransferase (GNAT) family 67 163 9.9E-12 T 22-04-2016 IPR000182 GNAT domain GO:0008080 PP4_RS17605 b45c017b5be44e9957860c07a30cd98d 468 PANTHER PTHR21666:SF206 287 468 1.6E-55 T 22-04-2016 PP4_RS17605 b45c017b5be44e9957860c07a30cd98d 468 Gene3D G3DSA:3.40.190.10 37 175 2.6E-6 T 22-04-2016 PP4_RS17605 b45c017b5be44e9957860c07a30cd98d 468 SUPERFAMILY SSF53850 46 285 1.01E-24 T 22-04-2016 PP4_RS17605 b45c017b5be44e9957860c07a30cd98d 468 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 63 268 3.9E-8 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS17605 b45c017b5be44e9957860c07a30cd98d 468 SUPERFAMILY SSF53955 283 415 6.48E-26 T 22-04-2016 IPR023346 Lysozyme-like domain PP4_RS17605 b45c017b5be44e9957860c07a30cd98d 468 PANTHER PTHR21666 287 468 1.6E-55 T 22-04-2016 PP4_RS17605 b45c017b5be44e9957860c07a30cd98d 468 Gene3D G3DSA:1.10.530.10 283 456 4.2E-33 T 22-04-2016 PP4_RS17605 b45c017b5be44e9957860c07a30cd98d 468 SMART SM00062 47 286 0.0088 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS17605 b45c017b5be44e9957860c07a30cd98d 468 Pfam PF01464 Transglycosylase SLT domain 309 417 2.9E-13 T 22-04-2016 IPR008258 Transglycosylase SLT domain 1 PP4_RS00685 8d68b62e4587096a4c1662189860b65c 552 TIGRFAM TIGR01013 2a58: sodium-dependent inorganic phosphate (Pi) transporter 67 521 4.7E-104 T 22-04-2016 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: REACT_15518 PP4_RS00685 8d68b62e4587096a4c1662189860b65c 552 Pfam PF02690 Na+/Pi-cotransporter 159 253 2.4E-10 T 22-04-2016 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: REACT_15518 PP4_RS00685 8d68b62e4587096a4c1662189860b65c 552 Pfam PF02690 Na+/Pi-cotransporter 13 147 7.7E-34 T 22-04-2016 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: REACT_15518 PP4_RS00685 8d68b62e4587096a4c1662189860b65c 552 PANTHER PTHR10010:SF26 1 446 1.6E-40 T 22-04-2016 PP4_RS00685 8d68b62e4587096a4c1662189860b65c 552 TIGRFAM TIGR00704 NaPi_cotrn_rel: Na/Pi-cotransporter II-related protein 1 308 1.2E-104 T 22-04-2016 IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein GO:0016020 PP4_RS00685 8d68b62e4587096a4c1662189860b65c 552 SUPERFAMILY SSF109755 320 531 1.26E-22 T 22-04-2016 PP4_RS00685 8d68b62e4587096a4c1662189860b65c 552 PANTHER PTHR10010 1 446 1.6E-40 T 22-04-2016 PP4_RS10290 bd6e0578213ca87119458b8227e23cfa 249 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 4 220 9.0E-29 T 22-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 PP4_RS10290 bd6e0578213ca87119458b8227e23cfa 249 PIRSF PIRSF036525 1 249 3.2E-116 T 22-04-2016 IPR012797 Cobalamin (vitamin B12) biosynthesis CobF, precorrin-6A synthase GO:0009236|GO:0043819 KEGG: 00860+2.1.1.152|MetaCyc: PWY-7376|UniPathway: UPA00148 PP4_RS10290 bd6e0578213ca87119458b8227e23cfa 249 SUPERFAMILY SSF53790 4 247 2.91E-34 T 22-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 PP4_RS10290 bd6e0578213ca87119458b8227e23cfa 249 Gene3D G3DSA:3.40.1010.10 2 142 1.2E-35 T 22-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 PP4_RS10290 bd6e0578213ca87119458b8227e23cfa 249 Gene3D G3DSA:3.30.950.10 143 248 8.6E-45 T 22-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 PP4_RS10290 bd6e0578213ca87119458b8227e23cfa 249 TIGRFAM TIGR02434 CobF: precorrin-6A synthase (deacetylating) 2 247 5.1E-111 T 22-04-2016 IPR012797 Cobalamin (vitamin B12) biosynthesis CobF, precorrin-6A synthase GO:0009236|GO:0043819 KEGG: 00860+2.1.1.152|MetaCyc: PWY-7376|UniPathway: UPA00148 PP4_RS10290 bd6e0578213ca87119458b8227e23cfa 249 PANTHER PTHR10882:SF1 3 33 5.4E-29 T 22-04-2016 PP4_RS10290 bd6e0578213ca87119458b8227e23cfa 249 PANTHER PTHR10882:SF1 57 165 5.4E-29 T 22-04-2016 PP4_RS10290 bd6e0578213ca87119458b8227e23cfa 249 PANTHER PTHR10882 3 33 5.4E-29 T 22-04-2016 PP4_RS10290 bd6e0578213ca87119458b8227e23cfa 249 PANTHER PTHR10882 57 165 5.4E-29 T 22-04-2016 PP4_RS07360 afa5d1e2beb690d63bf23a05201f6087 210 TIGRFAM TIGR01189 ccmA: heme ABC exporter, ATP-binding protein CcmA 5 205 1.1E-80 T 22-04-2016 IPR005895 ABC transporter, haem export, CcmA GO:0005215|GO:0017004|GO:0030288 PP4_RS07360 afa5d1e2beb690d63bf23a05201f6087 210 PANTHER PTHR24220 6 194 4.7E-91 T 22-04-2016 PP4_RS07360 afa5d1e2beb690d63bf23a05201f6087 210 Pfam PF00005 ABC transporter 21 160 3.4E-28 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS07360 afa5d1e2beb690d63bf23a05201f6087 210 PANTHER PTHR24220:SF508 6 194 4.7E-91 T 22-04-2016 PP4_RS07360 afa5d1e2beb690d63bf23a05201f6087 210 SMART SM00382 29 207 7.4E-10 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS07360 afa5d1e2beb690d63bf23a05201f6087 210 SUPERFAMILY SSF52540 7 192 1.61E-42 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS07360 afa5d1e2beb690d63bf23a05201f6087 210 Gene3D G3DSA:3.40.50.300 13 191 3.3E-42 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS27155 9def44b3f4ba524159f2c5b865d7a5bb 429 Pfam PF07690 Major Facilitator Superfamily 68 389 1.5E-22 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS27155 9def44b3f4ba524159f2c5b865d7a5bb 429 SUPERFAMILY SSF103473 20 427 2.62E-59 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS27155 9def44b3f4ba524159f2c5b865d7a5bb 429 PANTHER PTHR23508:SF5 13 424 1.2E-249 T 22-04-2016 PP4_RS27155 9def44b3f4ba524159f2c5b865d7a5bb 429 Gene3D G3DSA:1.20.1250.20 21 229 2.2E-21 T 22-04-2016 PP4_RS27155 9def44b3f4ba524159f2c5b865d7a5bb 429 Gene3D G3DSA:1.20.1250.20 249 425 3.0E-14 T 22-04-2016 PP4_RS27155 9def44b3f4ba524159f2c5b865d7a5bb 429 PANTHER PTHR23508 13 424 1.2E-249 T 22-04-2016 PP4_RS25490 b0be7afe89d3402eaf71fcfbfe673eb7 184 SUPERFAMILY SSF50341 36 169 1.15E-30 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS25490 b0be7afe89d3402eaf71fcfbfe673eb7 184 Gene3D G3DSA:2.40.50.180 80 125 4.5E-8 T 22-04-2016 PP4_RS25490 b0be7afe89d3402eaf71fcfbfe673eb7 184 SMART SM00260 37 174 6.6E-24 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS25490 b0be7afe89d3402eaf71fcfbfe673eb7 184 PANTHER PTHR22617 40 157 4.8E-27 T 22-04-2016 PP4_RS25490 b0be7afe89d3402eaf71fcfbfe673eb7 184 Pfam PF01584 CheW-like domain 43 157 1.6E-27 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS27305 47ca506fef9896ee0d1d963cac28dfca 323 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 6 166 9.8E-36 T 22-04-2016 IPR003495 CobW/HypB/UreG, nucleotide-binding domain PP4_RS27305 47ca506fef9896ee0d1d963cac28dfca 323 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 240 320 7.2E-6 T 22-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal PP4_RS27305 47ca506fef9896ee0d1d963cac28dfca 323 Gene3D G3DSA:3.40.50.300 4 193 2.6E-39 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS27305 47ca506fef9896ee0d1d963cac28dfca 323 SUPERFAMILY SSF52540 4 166 3.98E-21 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS27305 47ca506fef9896ee0d1d963cac28dfca 323 PANTHER PTHR13748 1 270 5.3E-43 T 22-04-2016 PP4_RS09545 1fe429086913edfbaae4709ed5b3e9be 681 PANTHER PTHR32552:SF13 17 678 2.9E-295 T 22-04-2016 PP4_RS09545 1fe429086913edfbaae4709ed5b3e9be 681 Gene3D G3DSA:2.40.170.20 146 675 8.2E-96 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS09545 1fe429086913edfbaae4709ed5b3e9be 681 Pfam PF00593 TonB dependent receptor 428 676 1.3E-26 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS09545 1fe429086913edfbaae4709ed5b3e9be 681 Gene3D G3DSA:2.170.130.10 15 145 1.2E-23 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS09545 1fe429086913edfbaae4709ed5b3e9be 681 PANTHER PTHR32552 17 678 2.9E-295 T 22-04-2016 PP4_RS09545 1fe429086913edfbaae4709ed5b3e9be 681 Pfam PF07715 TonB-dependent Receptor Plug Domain 33 141 2.2E-15 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS09545 1fe429086913edfbaae4709ed5b3e9be 681 SUPERFAMILY SSF56935 10 676 5.13E-109 T 22-04-2016 PP4_RS18870 a71549e290661c2fd3a54d245aaeca9c 796 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 374 502 3.1E-10 T 22-04-2016 IPR000014 PAS domain PP4_RS18870 a71549e290661c2fd3a54d245aaeca9c 796 SMART SM01079 85 272 6.0E-26 T 22-04-2016 IPR006189 CHASE domain PP4_RS18870 a71549e290661c2fd3a54d245aaeca9c 796 Pfam PF03924 CHASE domain 88 270 7.4E-26 T 22-04-2016 IPR006189 CHASE domain PP4_RS18870 a71549e290661c2fd3a54d245aaeca9c 796 SUPERFAMILY SSF55785 351 493 5.23E-16 T 22-04-2016 IPR000014 PAS domain PP4_RS18870 a71549e290661c2fd3a54d245aaeca9c 796 Gene3D G3DSA:3.30.450.20 351 485 1.3E-20 T 22-04-2016 PP4_RS18870 a71549e290661c2fd3a54d245aaeca9c 796 SMART SM00091 507 579 100.0 T 22-04-2016 IPR000014 PAS domain PP4_RS18870 a71549e290661c2fd3a54d245aaeca9c 796 SMART SM00091 364 430 5.0E-4 T 22-04-2016 IPR000014 PAS domain PP4_RS18870 a71549e290661c2fd3a54d245aaeca9c 796 Pfam PF08447 PAS fold 535 611 4.1E-9 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 PP4_RS18870 a71549e290661c2fd3a54d245aaeca9c 796 PANTHER PTHR10799 541 791 6.9E-25 T 22-04-2016 PP4_RS18870 a71549e290661c2fd3a54d245aaeca9c 796 Pfam PF00990 Diguanylate cyclase, GGDEF domain 638 790 2.3E-41 T 22-04-2016 IPR000160 GGDEF domain PP4_RS18870 a71549e290661c2fd3a54d245aaeca9c 796 SMART SM00086 585 626 10.0 T 22-04-2016 IPR001610 PAC motif PP4_RS18870 a71549e290661c2fd3a54d245aaeca9c 796 SMART SM00086 453 495 5.7E-5 T 22-04-2016 IPR001610 PAC motif PP4_RS18870 a71549e290661c2fd3a54d245aaeca9c 796 Gene3D G3DSA:3.30.450.20 486 637 1.5E-23 T 22-04-2016 PP4_RS18870 a71549e290661c2fd3a54d245aaeca9c 796 Pfam PF13426 PAS domain 377 494 3.0E-8 T 22-04-2016 IPR000014 PAS domain PP4_RS18870 a71549e290661c2fd3a54d245aaeca9c 796 PANTHER PTHR10799:SF750 541 791 6.9E-25 T 22-04-2016 PP4_RS18870 a71549e290661c2fd3a54d245aaeca9c 796 SUPERFAMILY SSF55785 492 624 3.66E-13 T 22-04-2016 IPR000014 PAS domain PP4_RS18870 a71549e290661c2fd3a54d245aaeca9c 796 Gene3D G3DSA:3.30.70.270 639 792 1.5E-49 T 22-04-2016 PP4_RS18870 a71549e290661c2fd3a54d245aaeca9c 796 SUPERFAMILY SSF55073 642 791 5.81E-44 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS18870 a71549e290661c2fd3a54d245aaeca9c 796 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 634 792 4.8E-45 T 22-04-2016 IPR000160 GGDEF domain PP4_RS18870 a71549e290661c2fd3a54d245aaeca9c 796 SMART SM00267 626 794 3.5E-59 T 22-04-2016 IPR000160 GGDEF domain PP4_RS25060 bd64d05a034e82b74bdf88f2847172f8 283 PANTHER PTHR30433:SF4 1 283 3.5E-147 T 22-04-2016 IPR022522 Flagellar motor stator, MotA PP4_RS25060 bd64d05a034e82b74bdf88f2847172f8 283 Pfam PF01618 MotA/TolQ/ExbB proton channel family 137 239 2.0E-9 T 22-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 PP4_RS25060 bd64d05a034e82b74bdf88f2847172f8 283 PANTHER PTHR30433 1 283 3.5E-147 T 22-04-2016 PP4_RS25060 bd64d05a034e82b74bdf88f2847172f8 283 ProSitePatterns PS01307 Flagellar motor protein motA family signature. 205 222 - T 22-04-2016 IPR000540 Flagellar motor protein MotA, conserved site PP4_RS25060 bd64d05a034e82b74bdf88f2847172f8 283 TIGRFAM TIGR03818 MotA1: flagellar motor stator protein MotA 1 281 8.9E-111 T 22-04-2016 IPR022522 Flagellar motor stator, MotA PP4_RS09445 ac14b679ee5efa995b98eddbaaa466cf 216 Gene3D G3DSA:1.10.760.10 19 108 9.7E-28 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS09445 ac14b679ee5efa995b98eddbaaa466cf 216 SUPERFAMILY SSF46626 18 107 2.33E-23 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS09445 ac14b679ee5efa995b98eddbaaa466cf 216 PANTHER PTHR33751 1 216 4.5E-73 T 22-04-2016 PP4_RS09445 ac14b679ee5efa995b98eddbaaa466cf 216 Gene3D G3DSA:1.10.760.10 129 207 1.4E-25 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS09445 ac14b679ee5efa995b98eddbaaa466cf 216 Pfam PF00034 Cytochrome c 140 206 3.3E-8 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS09445 ac14b679ee5efa995b98eddbaaa466cf 216 Pfam PF00034 Cytochrome c 22 107 8.2E-10 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS09445 ac14b679ee5efa995b98eddbaaa466cf 216 PIRSF PIRSF000005 1 211 1.4E-66 T 22-04-2016 IPR024167 Cytochrome c4 GO:0005506|GO:0009055|GO:0020037|GO:0042597 PP4_RS09445 ac14b679ee5efa995b98eddbaaa466cf 216 PANTHER PTHR33751:SF2 1 216 4.5E-73 T 22-04-2016 PP4_RS09445 ac14b679ee5efa995b98eddbaaa466cf 216 SUPERFAMILY SSF46626 139 208 1.05E-19 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS23575 6b7120d6729f5e844c4166727ed8c4f1 989 PANTHER PTHR24423:SF497 628 988 1.4E-113 T 22-04-2016 PP4_RS23575 6b7120d6729f5e844c4166727ed8c4f1 989 PANTHER PTHR24423:SF497 25 43 1.4E-113 T 22-04-2016 PP4_RS23575 6b7120d6729f5e844c4166727ed8c4f1 989 PRINTS PR00344 Bacterial sensor protein C-terminal signature 960 973 3.4E-14 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS23575 6b7120d6729f5e844c4166727ed8c4f1 989 PRINTS PR00344 Bacterial sensor protein C-terminal signature 901 915 3.4E-14 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS23575 6b7120d6729f5e844c4166727ed8c4f1 989 PRINTS PR00344 Bacterial sensor protein C-terminal signature 919 929 3.4E-14 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS23575 6b7120d6729f5e844c4166727ed8c4f1 989 PRINTS PR00344 Bacterial sensor protein C-terminal signature 932 950 3.4E-14 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS23575 6b7120d6729f5e844c4166727ed8c4f1 989 Gene3D G3DSA:1.10.287.130 750 805 4.3E-8 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS23575 6b7120d6729f5e844c4166727ed8c4f1 989 Pfam PF00989 PAS fold 633 713 1.9E-6 T 22-04-2016 IPR013767 PAS fold GO:0006355 PP4_RS23575 6b7120d6729f5e844c4166727ed8c4f1 989 Gene3D G3DSA:3.30.450.20 623 738 1.4E-9 T 22-04-2016 PP4_RS23575 6b7120d6729f5e844c4166727ed8c4f1 989 SMART SM00388 754 820 8.9E-9 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS23575 6b7120d6729f5e844c4166727ed8c4f1 989 PANTHER PTHR24423 628 988 1.4E-113 T 22-04-2016 PP4_RS23575 6b7120d6729f5e844c4166727ed8c4f1 989 PANTHER PTHR24423 25 43 1.4E-113 T 22-04-2016 PP4_RS23575 6b7120d6729f5e844c4166727ed8c4f1 989 SUPERFAMILY SSF47384 749 817 3.53E-10 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS23575 6b7120d6729f5e844c4166727ed8c4f1 989 Pfam PF00512 His Kinase A (phospho-acceptor) domain 755 817 9.8E-10 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS23575 6b7120d6729f5e844c4166727ed8c4f1 989 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 631 746 2.3E-8 T 22-04-2016 IPR000014 PAS domain PP4_RS23575 6b7120d6729f5e844c4166727ed8c4f1 989 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 864 974 4.6E-21 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS23575 6b7120d6729f5e844c4166727ed8c4f1 989 SUPERFAMILY SSF55874 819 976 1.03E-38 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS23575 6b7120d6729f5e844c4166727ed8c4f1 989 SUPERFAMILY SSF55785 621 716 4.95E-9 T 22-04-2016 IPR000014 PAS domain PP4_RS23575 6b7120d6729f5e844c4166727ed8c4f1 989 Gene3D G3DSA:3.30.565.10 806 975 2.0E-40 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS23575 6b7120d6729f5e844c4166727ed8c4f1 989 SMART SM00387 864 976 7.1E-35 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS14800 dcc0d6cc70bc593bb50b6db99a4f797b 204 PANTHER PTHR13887:SF22 1 198 4.9E-67 T 22-04-2016 PP4_RS14800 dcc0d6cc70bc593bb50b6db99a4f797b 204 Pfam PF01323 DSBA-like thioredoxin domain 4 195 6.3E-45 T 22-04-2016 IPR001853 DSBA-like thioredoxin domain GO:0015035 PP4_RS14800 dcc0d6cc70bc593bb50b6db99a4f797b 204 Gene3D G3DSA:3.40.30.10 1 197 7.0E-63 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS14800 dcc0d6cc70bc593bb50b6db99a4f797b 204 PANTHER PTHR13887 1 198 4.9E-67 T 22-04-2016 PP4_RS14800 dcc0d6cc70bc593bb50b6db99a4f797b 204 PIRSF PIRSF006386 1 203 4.1E-69 T 22-04-2016 IPR014440 HCCA isomerase/glutathione S-transferase kappa PP4_RS14800 dcc0d6cc70bc593bb50b6db99a4f797b 204 SUPERFAMILY SSF52833 2 198 1.43E-45 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS02700 e8fd21dcf272c2a39af33bba8c4608ea 218 SUPERFAMILY SSF81342 4 213 8.63E-51 T 22-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 PP4_RS02700 e8fd21dcf272c2a39af33bba8c4608ea 218 Pfam PF01292 Prokaryotic cytochrome b561 9 177 2.3E-19 T 22-04-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 PP4_RS02700 e8fd21dcf272c2a39af33bba8c4608ea 218 Gene3D G3DSA:1.20.950.20 1 213 7.0E-65 T 22-04-2016 PP4_RS02700 e8fd21dcf272c2a39af33bba8c4608ea 218 TIGRFAM TIGR01583 formate-DH-gamm: formate dehydrogenase, gamma subunit 7 205 1.6E-58 T 22-04-2016 IPR006471 Formate dehydrogenase, gamma subunit GO:0008863|GO:0009326|GO:0016021|GO:0045333 PP4_RS02700 e8fd21dcf272c2a39af33bba8c4608ea 218 PANTHER PTHR30074 1 204 3.1E-67 T 22-04-2016 PP4_RS25565 4f8010fdfe15a7c72e2cb60babeebcca 560 TIGRFAM TIGR01839 PHA_synth_II: poly(R)-hydroxyalkanoic acid synthase, class II 1 560 0.0 T 22-04-2016 IPR011287 Poly(R)-hydroxyalkanoic acid synthase, class II GO:0016746|GO:0042619 KEGG: 00061+2.3.1.-|KEGG: 00253+2.3.1.-|KEGG: 00261+2.3.1.-|KEGG: 00310+2.3.1.-|KEGG: 00330+2.3.1.-|KEGG: 00332+2.3.1.-|KEGG: 00340+2.3.1.-|KEGG: 00350+2.3.1.-|KEGG: 00564+2.3.1.-|KEGG: 00565+2.3.1.-|KEGG: 00604+2.3.1.-|KEGG: 00623+2.3.1.-|KEGG: 00626+2.3.1.-|KEGG: 00627+2.3.1.-|KEGG: 00642+2.3.1.-|KEGG: 00650+2.3.1.-|KEGG: 00680+2.3.1.-|KEGG: 00903+2.3.1.-|KEGG: 00904+2.3.1.-|KEGG: 00906+2.3.1.-|KEGG: 00940+2.3.1.-|KEGG: 00942+2.3.1.-|KEGG: 00950+2.3.1.-|KEGG: 00960+2.3.1.-|KEGG: 00965+2.3.1.- PP4_RS25565 4f8010fdfe15a7c72e2cb60babeebcca 560 PANTHER PTHR36837:SF2 13 560 9.2E-241 T 22-04-2016 PP4_RS25565 4f8010fdfe15a7c72e2cb60babeebcca 560 Pfam PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus 75 243 2.6E-66 T 22-04-2016 IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0042619 KEGG: 00061+2.3.1.-|KEGG: 00253+2.3.1.-|KEGG: 00261+2.3.1.-|KEGG: 00310+2.3.1.-|KEGG: 00330+2.3.1.-|KEGG: 00332+2.3.1.-|KEGG: 00340+2.3.1.-|KEGG: 00350+2.3.1.-|KEGG: 00564+2.3.1.-|KEGG: 00565+2.3.1.-|KEGG: 00604+2.3.1.-|KEGG: 00623+2.3.1.-|KEGG: 00626+2.3.1.-|KEGG: 00627+2.3.1.-|KEGG: 00642+2.3.1.-|KEGG: 00650+2.3.1.-|KEGG: 00680+2.3.1.-|KEGG: 00903+2.3.1.-|KEGG: 00904+2.3.1.-|KEGG: 00906+2.3.1.-|KEGG: 00940+2.3.1.-|KEGG: 00942+2.3.1.-|KEGG: 00950+2.3.1.-|KEGG: 00960+2.3.1.-|KEGG: 00965+2.3.1.- PP4_RS25565 4f8010fdfe15a7c72e2cb60babeebcca 560 PANTHER PTHR36837 13 560 9.2E-241 T 22-04-2016 PP4_RS25565 4f8010fdfe15a7c72e2cb60babeebcca 560 SUPERFAMILY SSF53474 201 493 1.28E-32 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS25565 4f8010fdfe15a7c72e2cb60babeebcca 560 Gene3D G3DSA:3.40.50.1820 160 527 8.7E-56 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS14700 820e16c4e710216908b2b476703950c7 167 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 38 55 - T 22-04-2016 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 PP4_RS14700 820e16c4e710216908b2b476703950c7 167 Gene3D G3DSA:2.40.100.10 3 165 4.6E-52 T 22-04-2016 IPR029000 Cyclophilin-like domain PP4_RS14700 820e16c4e710216908b2b476703950c7 167 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 7.2E-11 T 22-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 PP4_RS14700 820e16c4e710216908b2b476703950c7 167 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 43 55 7.2E-11 T 22-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 PP4_RS14700 820e16c4e710216908b2b476703950c7 167 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 17 32 7.2E-11 T 22-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 PP4_RS14700 820e16c4e710216908b2b476703950c7 167 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 164 9.0E-48 T 22-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 PP4_RS14700 820e16c4e710216908b2b476703950c7 167 PANTHER PTHR11071:SF192 5 166 1.9E-70 T 22-04-2016 PP4_RS14700 820e16c4e710216908b2b476703950c7 167 PANTHER PTHR11071 5 166 1.9E-70 T 22-04-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 PP4_RS14700 820e16c4e710216908b2b476703950c7 167 SUPERFAMILY SSF50891 3 165 4.24E-55 T 22-04-2016 IPR029000 Cyclophilin-like domain PP4_RS14700 820e16c4e710216908b2b476703950c7 167 PIRSF PIRSF001467 1 166 1.1E-26 T 22-04-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 PP4_RS10335 a6b57b197387b3d545ea0f9ec28d6964 394 Pfam PF00108 Thiolase, N-terminal domain 6 262 7.9E-84 T 22-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 PP4_RS10335 a6b57b197387b3d545ea0f9ec28d6964 394 SUPERFAMILY SSF53901 272 393 9.89E-45 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS10335 a6b57b197387b3d545ea0f9ec28d6964 394 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 8 392 3.4E-135 T 22-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 PP4_RS10335 a6b57b197387b3d545ea0f9ec28d6964 394 Gene3D G3DSA:3.40.47.10 149 195 1.9E-63 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS10335 a6b57b197387b3d545ea0f9ec28d6964 394 Gene3D G3DSA:3.40.47.10 278 393 1.9E-63 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS10335 a6b57b197387b3d545ea0f9ec28d6964 394 SUPERFAMILY SSF53901 6 271 3.55E-81 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS10335 a6b57b197387b3d545ea0f9ec28d6964 394 PANTHER PTHR18919 1 394 6.4E-186 T 22-04-2016 PP4_RS10335 a6b57b197387b3d545ea0f9ec28d6964 394 Gene3D G3DSA:3.40.47.10 196 276 2.1E-64 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS10335 a6b57b197387b3d545ea0f9ec28d6964 394 Gene3D G3DSA:3.40.47.10 5 126 2.1E-64 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS10335 a6b57b197387b3d545ea0f9ec28d6964 394 PANTHER PTHR18919:SF95 1 394 6.4E-186 T 22-04-2016 PP4_RS10335 a6b57b197387b3d545ea0f9ec28d6964 394 PIRSF PIRSF000429 1 394 2.5E-128 T 22-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 PP4_RS10335 a6b57b197387b3d545ea0f9ec28d6964 394 ProSitePatterns PS00098 Thiolases acyl-enzyme intermediate signature. 87 105 - T 22-04-2016 IPR020615 Thiolase, acyl-enzyme intermediate active site GO:0008152|GO:0016747 Reactome: REACT_22258 PP4_RS10335 a6b57b197387b3d545ea0f9ec28d6964 394 ProSitePatterns PS00099 Thiolases active site. 375 388 - T 22-04-2016 IPR020610 Thiolase, active site GO:0008152|GO:0016747 PP4_RS10335 a6b57b197387b3d545ea0f9ec28d6964 394 Pfam PF02803 Thiolase, C-terminal domain 271 393 4.9E-46 T 22-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 PP4_RS04020 6c9b9400cd28e4c824487ccb7cb574a9 270 SUPERFAMILY SSF51735 2 247 5.95E-57 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS04020 6c9b9400cd28e4c824487ccb7cb574a9 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 2.0E-25 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS04020 6c9b9400cd28e4c824487ccb7cb574a9 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 113 129 2.0E-25 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS04020 6c9b9400cd28e4c824487ccb7cb574a9 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 177 2.0E-25 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS04020 6c9b9400cd28e4c824487ccb7cb574a9 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 67 78 2.0E-25 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS04020 6c9b9400cd28e4c824487ccb7cb574a9 270 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 158 2.0E-25 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS04020 6c9b9400cd28e4c824487ccb7cb574a9 270 PANTHER PTHR24322 139 170 3.0E-45 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS04020 6c9b9400cd28e4c824487ccb7cb574a9 270 PANTHER PTHR24322 6 123 3.0E-45 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS04020 6c9b9400cd28e4c824487ccb7cb574a9 270 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 139 158 3.4E-10 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS04020 6c9b9400cd28e4c824487ccb7cb574a9 270 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 119 127 3.4E-10 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS04020 6c9b9400cd28e4c824487ccb7cb574a9 270 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 67 78 3.4E-10 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS04020 6c9b9400cd28e4c824487ccb7cb574a9 270 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 2 175 0.009 T 22-04-2016 PP4_RS04020 6c9b9400cd28e4c824487ccb7cb574a9 270 Pfam PF00106 short chain dehydrogenase 3 183 7.5E-44 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS04020 6c9b9400cd28e4c824487ccb7cb574a9 270 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 126 154 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PP4_RS04020 6c9b9400cd28e4c824487ccb7cb574a9 270 PANTHER PTHR24322:SF513 139 170 3.0E-45 T 22-04-2016 PP4_RS04020 6c9b9400cd28e4c824487ccb7cb574a9 270 PANTHER PTHR24322:SF513 6 123 3.0E-45 T 22-04-2016 PP4_RS04020 6c9b9400cd28e4c824487ccb7cb574a9 270 Gene3D G3DSA:3.40.50.720 3 262 1.4E-61 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS11165 61c8922a921e45b903ea2c5c6696cecd 159 PANTHER PTHR33990 2 159 1.0E-100 T 22-04-2016 PP4_RS11165 61c8922a921e45b903ea2c5c6696cecd 159 Pfam PF06983 3-demethylubiquinone-9 3-methyltransferase 4 119 1.5E-48 T 22-04-2016 IPR028973 3-demethylubiquinone-9 3-methyltransferase PP4_RS11165 61c8922a921e45b903ea2c5c6696cecd 159 PIRSF PIRSF021700 1 159 3.6E-68 T 22-04-2016 IPR009725 Predicted 3-demethylubiquinone-9 3-methyltransferase PP4_RS11165 61c8922a921e45b903ea2c5c6696cecd 159 PANTHER PTHR33990:SF3 2 159 1.0E-100 T 22-04-2016 PP4_RS11165 61c8922a921e45b903ea2c5c6696cecd 159 SUPERFAMILY SSF54593 4 157 8.75E-48 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PP4_RS11165 61c8922a921e45b903ea2c5c6696cecd 159 Gene3D G3DSA:3.10.180.10 1 131 2.5E-41 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PP4_RS11305 817f703a8ae49adb786eaf5d6cac031f 454 PIRSF PIRSF002808 1 440 2.7E-48 T 22-04-2016 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 PP4_RS11305 817f703a8ae49adb786eaf5d6cac031f 454 PANTHER PTHR11662:SF18 5 450 2.3E-232 T 22-04-2016 PP4_RS11305 817f703a8ae49adb786eaf5d6cac031f 454 Gene3D G3DSA:1.20.1250.20 3 208 1.9E-49 T 22-04-2016 PP4_RS11305 817f703a8ae49adb786eaf5d6cac031f 454 TIGRFAM TIGR00893 2A0114: D-galactonate transporter 19 424 4.4E-159 T 22-04-2016 IPR004744 D-galactonate transporter GO:0005215|GO:0006810|GO:0016021 PP4_RS11305 817f703a8ae49adb786eaf5d6cac031f 454 Gene3D G3DSA:1.20.1250.20 233 434 1.4E-35 T 22-04-2016 PP4_RS11305 817f703a8ae49adb786eaf5d6cac031f 454 SUPERFAMILY SSF103473 5 434 7.98E-84 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS11305 817f703a8ae49adb786eaf5d6cac031f 454 Pfam PF07690 Major Facilitator Superfamily 17 305 2.2E-48 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS11305 817f703a8ae49adb786eaf5d6cac031f 454 PANTHER PTHR11662 5 450 2.3E-232 T 22-04-2016 PP4_RS22835 5af2cbb9c61985a2838c5bc78ae71be9 301 TIGRFAM TIGR01777 yfcH: TIGR01777 family protein 3 294 1.1E-106 T 22-04-2016 IPR010099 Epimerase family protein SDR39U1 PP4_RS22835 5af2cbb9c61985a2838c5bc78ae71be9 301 PANTHER PTHR11092:SF0 1 297 4.8E-133 T 22-04-2016 PP4_RS22835 5af2cbb9c61985a2838c5bc78ae71be9 301 Pfam PF08338 Domain of unknown function (DUF1731) 251 297 2.6E-19 T 22-04-2016 IPR013549 Domain of unknown function DUF1731 PP4_RS22835 5af2cbb9c61985a2838c5bc78ae71be9 301 SUPERFAMILY SSF51735 1 294 7.34E-44 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS22835 5af2cbb9c61985a2838c5bc78ae71be9 301 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 223 1.4E-26 T 22-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 PP4_RS22835 5af2cbb9c61985a2838c5bc78ae71be9 301 PANTHER PTHR11092 1 297 4.8E-133 T 22-04-2016 IPR010099 Epimerase family protein SDR39U1 PP4_RS22835 5af2cbb9c61985a2838c5bc78ae71be9 301 Gene3D G3DSA:3.40.50.720 1 239 7.9E-26 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS23085 0402776321e60589011541516e73cfd0 372 Hamap MF_00456 Glutamate 5-kinase [proB]. 9 262 36.993 T 22-04-2016 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 PP4_RS23085 0402776321e60589011541516e73cfd0 372 ProSitePatterns PS00902 Glutamate 5-kinase signature. 211 228 - T 22-04-2016 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 PP4_RS23085 0402776321e60589011541516e73cfd0 372 TIGRFAM TIGR01027 proB: glutamate 5-kinase 10 370 1.9E-130 T 22-04-2016 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 PP4_RS23085 0402776321e60589011541516e73cfd0 372 Gene3D G3DSA:3.40.1160.10 3 264 7.2E-59 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PP4_RS23085 0402776321e60589011541516e73cfd0 372 SMART SM00359 281 364 1.1E-13 T 22-04-2016 IPR002478 PUA domain GO:0003723 PP4_RS23085 0402776321e60589011541516e73cfd0 372 SUPERFAMILY SSF88697 280 371 4.16E-24 T 22-04-2016 IPR015947 PUA-like domain PP4_RS23085 0402776321e60589011541516e73cfd0 372 Gene3D G3DSA:2.30.130.10 278 370 1.2E-26 T 22-04-2016 IPR015947 PUA-like domain PP4_RS23085 0402776321e60589011541516e73cfd0 372 PANTHER PTHR11063:SF6 9 372 4.1E-118 T 22-04-2016 PP4_RS23085 0402776321e60589011541516e73cfd0 372 PIRSF PIRSF000729 4 372 1.5E-130 T 22-04-2016 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|UniPathway: UPA00098 PP4_RS23085 0402776321e60589011541516e73cfd0 372 SUPERFAMILY SSF53633 9 261 4.19E-69 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PP4_RS23085 0402776321e60589011541516e73cfd0 372 Pfam PF00696 Amino acid kinase family 9 238 1.6E-45 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PP4_RS23085 0402776321e60589011541516e73cfd0 372 PANTHER PTHR11063 9 372 4.1E-118 T 22-04-2016 PP4_RS23085 0402776321e60589011541516e73cfd0 372 Pfam PF01472 PUA domain 281 355 1.4E-21 T 22-04-2016 IPR002478 PUA domain GO:0003723 PP4_RS23085 0402776321e60589011541516e73cfd0 372 PRINTS PR00474 Glutamate 5-kinase family signature 46 60 1.8E-52 T 22-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 PP4_RS23085 0402776321e60589011541516e73cfd0 372 PRINTS PR00474 Glutamate 5-kinase family signature 152 179 1.8E-52 T 22-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 PP4_RS23085 0402776321e60589011541516e73cfd0 372 PRINTS PR00474 Glutamate 5-kinase family signature 80 108 1.8E-52 T 22-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 PP4_RS23085 0402776321e60589011541516e73cfd0 372 PRINTS PR00474 Glutamate 5-kinase family signature 120 141 1.8E-52 T 22-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 PP4_RS23085 0402776321e60589011541516e73cfd0 372 PRINTS PR00474 Glutamate 5-kinase family signature 213 233 1.8E-52 T 22-04-2016 IPR001057 Glutamate/acetylglutamate kinase GO:0006561 PP4_RS22930 fc0a5b59ac27255873c03c243fc12e0f 366 PIRSF PIRSF006641 1 366 1.8E-159 T 22-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 PP4_RS22930 fc0a5b59ac27255873c03c243fc12e0f 366 Pfam PF01926 50S ribosome-binding GTPase 5 119 8.6E-22 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 PP4_RS22930 fc0a5b59ac27255873c03c243fc12e0f 366 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 70 85 1.2E-32 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 PP4_RS22930 fc0a5b59ac27255873c03c243fc12e0f 366 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 5 25 1.2E-32 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 PP4_RS22930 fc0a5b59ac27255873c03c243fc12e0f 366 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 26 44 1.2E-32 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 PP4_RS22930 fc0a5b59ac27255873c03c243fc12e0f 366 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 87 105 1.2E-32 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 PP4_RS22930 fc0a5b59ac27255873c03c243fc12e0f 366 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 366 6.1E-161 T 22-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 PP4_RS22930 fc0a5b59ac27255873c03c243fc12e0f 366 Gene3D G3DSA:1.10.150.300 131 202 9.5E-27 T 22-04-2016 IPR023192 TGS-like domain PP4_RS22930 fc0a5b59ac27255873c03c243fc12e0f 366 Gene3D G3DSA:3.40.50.300 203 269 4.1E-41 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS22930 fc0a5b59ac27255873c03c243fc12e0f 366 Gene3D G3DSA:3.40.50.300 4 130 4.1E-41 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS22930 fc0a5b59ac27255873c03c243fc12e0f 366 Gene3D G3DSA:3.10.20.30 270 366 1.0E-51 T 22-04-2016 IPR012675 Beta-grasp domain PP4_RS22930 fc0a5b59ac27255873c03c243fc12e0f 366 SUPERFAMILY SSF52540 3 304 2.88E-81 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS22930 fc0a5b59ac27255873c03c243fc12e0f 366 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 2 366 44.977 T 22-04-2016 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 PP4_RS22930 fc0a5b59ac27255873c03c243fc12e0f 366 PANTHER PTHR23305 1 366 1.5E-210 T 22-04-2016 PP4_RS22930 fc0a5b59ac27255873c03c243fc12e0f 366 Pfam PF06071 Protein of unknown function (DUF933) 282 365 6.8E-41 T 22-04-2016 IPR013029 Domain of unknown function DUF933 PP4_RS22930 fc0a5b59ac27255873c03c243fc12e0f 366 PANTHER PTHR23305:SF12 1 366 1.5E-210 T 22-04-2016 PP4_RS22930 fc0a5b59ac27255873c03c243fc12e0f 366 SUPERFAMILY SSF81271 282 363 1.07E-37 T 22-04-2016 IPR012676 TGS-like KEGG: 00970+6.1.1.3 PP4_RS21195 45cf45d150d7efd6cbdd7f8bdcbdabbc 875 ProSitePatterns PS00393 Phosphoenolpyruvate carboxylase active site 2. 533 545 - T 22-04-2016 IPR033129 Phosphoenolpyruvate carboxylase, His active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 PP4_RS21195 45cf45d150d7efd6cbdd7f8bdcbdabbc 875 Gene3D G3DSA:1.20.1440.90 272 385 1.3E-31 T 22-04-2016 PP4_RS21195 45cf45d150d7efd6cbdd7f8bdcbdabbc 875 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 573 602 1.2E-67 T 22-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 PP4_RS21195 45cf45d150d7efd6cbdd7f8bdcbdabbc 875 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 704 730 1.2E-67 T 22-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 PP4_RS21195 45cf45d150d7efd6cbdd7f8bdcbdabbc 875 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 244 259 1.2E-67 T 22-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 PP4_RS21195 45cf45d150d7efd6cbdd7f8bdcbdabbc 875 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 185 201 1.2E-67 T 22-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 PP4_RS21195 45cf45d150d7efd6cbdd7f8bdcbdabbc 875 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 531 551 1.2E-67 T 22-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 PP4_RS21195 45cf45d150d7efd6cbdd7f8bdcbdabbc 875 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 382 402 1.2E-67 T 22-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 PP4_RS21195 45cf45d150d7efd6cbdd7f8bdcbdabbc 875 PRINTS PR00150 Phosphoenolpyruvate carboxylase signature 132 145 1.2E-67 T 22-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 PP4_RS21195 45cf45d150d7efd6cbdd7f8bdcbdabbc 875 ProSitePatterns PS00781 Phosphoenolpyruvate carboxylase active site 1. 133 144 - T 22-04-2016 IPR018129 Phosphoenolpyruvate carboxylase, Lys active site KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 PP4_RS21195 45cf45d150d7efd6cbdd7f8bdcbdabbc 875 PANTHER PTHR30523:SF3 1 875 0.0 T 22-04-2016 PP4_RS21195 45cf45d150d7efd6cbdd7f8bdcbdabbc 875 SUPERFAMILY SSF51621 9 875 1.51E-302 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PP4_RS21195 45cf45d150d7efd6cbdd7f8bdcbdabbc 875 PANTHER PTHR30523 1 875 0.0 T 22-04-2016 PP4_RS21195 45cf45d150d7efd6cbdd7f8bdcbdabbc 875 Hamap MF_00595 Phosphoenolpyruvate carboxylase [ppc]. 1 875 18.47 T 22-04-2016 IPR022805 Phosphoenolpyruvate carboxylase, bacterial/plant-type GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 PP4_RS21195 45cf45d150d7efd6cbdd7f8bdcbdabbc 875 Pfam PF00311 Phosphoenolpyruvate carboxylase 127 875 5.3E-276 T 22-04-2016 IPR021135 Phosphoenolpyruvate carboxylase GO:0006099|GO:0008964|GO:0015977 KEGG: 00620+4.1.1.31|KEGG: 00680+4.1.1.31|KEGG: 00710+4.1.1.31|KEGG: 00720+4.1.1.31|MetaCyc: PWY-1622|MetaCyc: PWY-241|MetaCyc: PWY-5913|MetaCyc: PWY-6142|MetaCyc: PWY-6146|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117|MetaCyc: PWY-7124 PP4_RS14305 c52f526320b4a73c064db00b3f55823d 176 Pfam PF04542 Sigma-70 region 2 15 84 6.7E-11 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS14305 c52f526320b4a73c064db00b3f55823d 176 Gene3D G3DSA:1.10.1740.10 13 107 7.1E-10 T 22-04-2016 PP4_RS14305 c52f526320b4a73c064db00b3f55823d 176 Pfam PF08281 Sigma-70, region 4 114 167 7.8E-13 T 22-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS14305 c52f526320b4a73c064db00b3f55823d 176 Gene3D G3DSA:1.10.10.10 112 167 1.0E-11 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS14305 c52f526320b4a73c064db00b3f55823d 176 PANTHER PTHR30173:SF9 15 167 8.1E-38 T 22-04-2016 PP4_RS14305 c52f526320b4a73c064db00b3f55823d 176 SUPERFAMILY SSF88946 14 103 3.41E-11 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS14305 c52f526320b4a73c064db00b3f55823d 176 SUPERFAMILY SSF88659 107 167 2.83E-12 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS14305 c52f526320b4a73c064db00b3f55823d 176 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 11 167 6.3E-20 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS14305 c52f526320b4a73c064db00b3f55823d 176 PANTHER PTHR30173 15 167 8.1E-38 T 22-04-2016 PP4_RS12775 645c0cdc12a1423157fe9b8b4fb51aab 461 Gene3D G3DSA:3.40.605.10 12 245 1.3E-72 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS12775 645c0cdc12a1423157fe9b8b4fb51aab 461 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 260 271 - T 22-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 PP4_RS12775 645c0cdc12a1423157fe9b8b4fb51aab 461 PANTHER PTHR11699 12 460 4.1E-231 T 22-04-2016 PP4_RS12775 645c0cdc12a1423157fe9b8b4fb51aab 461 PANTHER PTHR11699:SF28 12 460 4.1E-231 T 22-04-2016 PP4_RS12775 645c0cdc12a1423157fe9b8b4fb51aab 461 SUPERFAMILY SSF53720 12 458 5.5E-141 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS12775 645c0cdc12a1423157fe9b8b4fb51aab 461 Gene3D G3DSA:3.40.309.10 246 431 5.6E-63 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PP4_RS12775 645c0cdc12a1423157fe9b8b4fb51aab 461 Pfam PF00171 Aldehyde dehydrogenase family 11 456 1.3E-140 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PP4_RS02230 16eb807cfa20fa3685fd2f984e68f369 255 Gene3D G3DSA:1.10.3680.10 21 171 5.1E-15 T 22-04-2016 IPR029024 TerB-like PP4_RS02230 16eb807cfa20fa3685fd2f984e68f369 255 SUPERFAMILY SSF46565 191 250 7.03E-12 T 22-04-2016 IPR001623 DnaJ domain PP4_RS02230 16eb807cfa20fa3685fd2f984e68f369 255 Gene3D G3DSA:1.10.287.110 190 250 4.3E-11 T 22-04-2016 IPR001623 DnaJ domain PP4_RS02230 16eb807cfa20fa3685fd2f984e68f369 255 SUPERFAMILY SSF158682 48 173 9.94E-16 T 22-04-2016 IPR029024 TerB-like PP4_RS02230 16eb807cfa20fa3685fd2f984e68f369 255 Pfam PF05099 Tellurite resistance protein TerB 57 169 3.6E-11 T 22-04-2016 IPR007791 Co-chaperone DjlA, N-terminal PP4_RS02230 16eb807cfa20fa3685fd2f984e68f369 255 Pfam PF00226 DnaJ domain 194 249 1.0E-7 T 22-04-2016 IPR001623 DnaJ domain PP4_RS02230 16eb807cfa20fa3685fd2f984e68f369 255 PRINTS PR00625 DnaJ domain signature 234 254 3.3E-6 T 22-04-2016 IPR001623 DnaJ domain PP4_RS02230 16eb807cfa20fa3685fd2f984e68f369 255 PRINTS PR00625 DnaJ domain signature 192 210 3.3E-6 T 22-04-2016 IPR001623 DnaJ domain PP4_RS02230 16eb807cfa20fa3685fd2f984e68f369 255 PRINTS PR00625 DnaJ domain signature 210 225 3.3E-6 T 22-04-2016 IPR001623 DnaJ domain PP4_RS02230 16eb807cfa20fa3685fd2f984e68f369 255 SMART SM00271 189 254 4.8E-6 T 22-04-2016 IPR001623 DnaJ domain PP4_RS00645 ecf9278a4370546bca7eb78231ac0623 442 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 43 58 - T 22-04-2016 IPR018107 Sodium:dicarboxylate symporter, conserved site Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS00645 ecf9278a4370546bca7eb78231ac0623 442 PANTHER PTHR11958:SF26 1 429 1.1E-244 T 22-04-2016 IPR033380 Glutamate-aspartate symport protein GltP/GltT GO:0015293|GO:0015810|GO:0015813|GO:0016021 PP4_RS00645 ecf9278a4370546bca7eb78231ac0623 442 SUPERFAMILY SSF118215 8 411 4.71E-126 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS00645 ecf9278a4370546bca7eb78231ac0623 442 Pfam PF00375 Sodium:dicarboxylate symporter family 8 410 1.7E-123 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS00645 ecf9278a4370546bca7eb78231ac0623 442 PANTHER PTHR11958 1 429 1.1E-244 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS00645 ecf9278a4370546bca7eb78231ac0623 442 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 305 328 - T 22-04-2016 IPR018107 Sodium:dicarboxylate symporter, conserved site Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS00645 ecf9278a4370546bca7eb78231ac0623 442 Gene3D G3DSA:1.10.3860.10 2 414 3.8E-133 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS00645 ecf9278a4370546bca7eb78231ac0623 442 PRINTS PR00173 Glutamate-aspartate symporter signature 81 106 3.7E-53 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS00645 ecf9278a4370546bca7eb78231ac0623 442 PRINTS PR00173 Glutamate-aspartate symporter signature 202 221 3.7E-53 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS00645 ecf9278a4370546bca7eb78231ac0623 442 PRINTS PR00173 Glutamate-aspartate symporter signature 337 356 3.7E-53 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS00645 ecf9278a4370546bca7eb78231ac0623 442 PRINTS PR00173 Glutamate-aspartate symporter signature 51 71 3.7E-53 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS00645 ecf9278a4370546bca7eb78231ac0623 442 PRINTS PR00173 Glutamate-aspartate symporter signature 364 384 3.7E-53 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS00645 ecf9278a4370546bca7eb78231ac0623 442 PRINTS PR00173 Glutamate-aspartate symporter signature 6 26 3.7E-53 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS00645 ecf9278a4370546bca7eb78231ac0623 442 PRINTS PR00173 Glutamate-aspartate symporter signature 302 328 3.7E-53 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS00645 ecf9278a4370546bca7eb78231ac0623 442 PRINTS PR00173 Glutamate-aspartate symporter signature 154 176 3.7E-53 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS23530 1b866dcfc3a2be7a0d4c6a48d5d6a4cb 255 PANTHER PTHR24220:SF558 3 253 3.1E-91 T 22-04-2016 PP4_RS23530 1b866dcfc3a2be7a0d4c6a48d5d6a4cb 255 SMART SM00382 26 215 1.8E-12 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS23530 1b866dcfc3a2be7a0d4c6a48d5d6a4cb 255 SUPERFAMILY SSF52540 2 228 1.22E-55 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23530 1b866dcfc3a2be7a0d4c6a48d5d6a4cb 255 Pfam PF00005 ABC transporter 17 167 2.9E-25 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS23530 1b866dcfc3a2be7a0d4c6a48d5d6a4cb 255 Gene3D G3DSA:3.40.50.300 3 237 6.6E-57 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23530 1b866dcfc3a2be7a0d4c6a48d5d6a4cb 255 PANTHER PTHR24220 3 253 3.1E-91 T 22-04-2016 PP4_RS18780 085fe2eb0daae901ede7e92768d15510 380 Pfam PF11890 Domain of unknown function (DUF3410) 288 376 8.3E-24 T 22-04-2016 IPR024531 Erythronate-4-phosphate dehydrogenase, dimerisation domain GO:0046983 KEGG: 00260+1.1.1.29|KEGG: 00630+1.1.1.29|KEGG: 00680+1.1.1.29|KEGG: 00750+1.1.1.290|MetaCyc: PWY-181|UniPathway: UPA00244 PP4_RS18780 085fe2eb0daae901ede7e92768d15510 380 Gene3D G3DSA:3.40.50.720 111 258 1.6E-35 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS18780 085fe2eb0daae901ede7e92768d15510 380 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 196 212 - T 22-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site PP4_RS18780 085fe2eb0daae901ede7e92768d15510 380 PANTHER PTHR10996:SF111 1 330 1.5E-133 T 22-04-2016 PP4_RS18780 085fe2eb0daae901ede7e92768d15510 380 Hamap MF_01825 Erythronate-4-phosphate dehydrogenase [pdxB]. 1 362 44.545 T 22-04-2016 IPR020921 Erythronate-4-phosphate dehydrogenase GO:0005737|GO:0008615|GO:0033711|GO:0055114 KEGG: 00260+1.1.1.29|KEGG: 00630+1.1.1.29|KEGG: 00680+1.1.1.29|KEGG: 00750+1.1.1.290|MetaCyc: PWY-181|UniPathway: UPA00244 PP4_RS18780 085fe2eb0daae901ede7e92768d15510 380 PANTHER PTHR10996 1 330 1.5E-133 T 22-04-2016 PP4_RS18780 085fe2eb0daae901ede7e92768d15510 380 Gene3D G3DSA:3.40.50.720 1 107 5.5E-19 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS18780 085fe2eb0daae901ede7e92768d15510 380 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 7 277 2.7E-18 T 22-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 PP4_RS18780 085fe2eb0daae901ede7e92768d15510 380 SUPERFAMILY SSF52283 3 101 1.34E-18 T 22-04-2016 PP4_RS18780 085fe2eb0daae901ede7e92768d15510 380 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 111 255 6.9E-31 T 22-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 PP4_RS18780 085fe2eb0daae901ede7e92768d15510 380 SUPERFAMILY SSF51735 92 256 2.66E-33 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS14570 139990644d2acf07d9f1e7ec69698070 406 TIGRFAM TIGR03916 rSAM_link_UDG: putative DNA modification/repair radical SAM protein 4 395 1.4E-161 T 22-04-2016 IPR023874 DNA modification/repair radical SAM protein, putative PP4_RS14570 139990644d2acf07d9f1e7ec69698070 406 PANTHER PTHR21180 134 402 2.0E-102 T 22-04-2016 PP4_RS14570 139990644d2acf07d9f1e7ec69698070 406 PANTHER PTHR21180:SF9 134 402 2.0E-102 T 22-04-2016 IPR023874 DNA modification/repair radical SAM protein, putative PP4_RS14570 139990644d2acf07d9f1e7ec69698070 406 SUPERFAMILY SSF47781 299 373 1.04E-10 T 22-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 PP4_RS14570 139990644d2acf07d9f1e7ec69698070 406 Gene3D G3DSA:3.20.20.70 52 186 2.7E-10 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS14570 139990644d2acf07d9f1e7ec69698070 406 SUPERFAMILY SSF102114 45 192 6.54E-16 T 22-04-2016 PP4_RS21315 e17ad5722c70915c987aec5cc00451d6 368 PANTHER PTHR22893 1 355 5.1E-171 T 22-04-2016 PP4_RS21315 e17ad5722c70915c987aec5cc00451d6 368 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 4 337 2.8E-70 T 22-04-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 PP4_RS21315 e17ad5722c70915c987aec5cc00451d6 368 SUPERFAMILY SSF51395 1 353 7.61E-117 T 22-04-2016 PP4_RS21315 e17ad5722c70915c987aec5cc00451d6 368 PANTHER PTHR22893:SF7 1 355 5.1E-171 T 22-04-2016 PP4_RS21315 e17ad5722c70915c987aec5cc00451d6 368 Gene3D G3DSA:3.20.20.70 1 352 2.1E-129 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS20015 14f75f4072ebf206bf3ec7265be15347 565 Pfam PF11316 Putative rhamnosyl transferase 20 202 6.1E-21 T 22-04-2016 IPR021466 Putative rhamnosyl transferase PP4_RS09680 2926ed906a5bff9e9fab4a94b4f956fb 517 SUPERFAMILY SSF52540 272 489 1.36E-41 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS09680 2926ed906a5bff9e9fab4a94b4f956fb 517 PANTHER PTHR24220:SF308 11 384 1.0E-154 T 22-04-2016 PP4_RS09680 2926ed906a5bff9e9fab4a94b4f956fb 517 SMART SM00382 33 222 4.2E-10 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS09680 2926ed906a5bff9e9fab4a94b4f956fb 517 SMART SM00382 282 477 0.0058 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS09680 2926ed906a5bff9e9fab4a94b4f956fb 517 PANTHER PTHR24220 11 384 1.0E-154 T 22-04-2016 PP4_RS09680 2926ed906a5bff9e9fab4a94b4f956fb 517 SUPERFAMILY SSF52540 9 231 1.25E-52 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS09680 2926ed906a5bff9e9fab4a94b4f956fb 517 Gene3D G3DSA:3.40.50.300 272 493 3.5E-45 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS09680 2926ed906a5bff9e9fab4a94b4f956fb 517 Gene3D G3DSA:3.40.50.300 7 234 1.5E-56 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS09680 2926ed906a5bff9e9fab4a94b4f956fb 517 ProSitePatterns PS00211 ABC transporters family signature. 402 416 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS09680 2926ed906a5bff9e9fab4a94b4f956fb 517 Pfam PF00005 ABC transporter 274 429 5.5E-18 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS09680 2926ed906a5bff9e9fab4a94b4f956fb 517 Pfam PF00005 ABC transporter 25 174 1.2E-28 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS19495 4cb3215ba8362cca5bae670ab3554b29 414 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 4 247 3.5E-61 T 22-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal PP4_RS19495 4cb3215ba8362cca5bae670ab3554b29 414 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 255 369 1.0E-40 T 22-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal PP4_RS19495 4cb3215ba8362cca5bae670ab3554b29 414 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 155 171 - T 22-04-2016 IPR018201 Beta-ketoacyl synthase, active site PP4_RS19495 4cb3215ba8362cca5bae670ab3554b29 414 Gene3D G3DSA:3.40.47.10 263 412 3.3E-67 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS19495 4cb3215ba8362cca5bae670ab3554b29 414 SUPERFAMILY SSF53901 4 252 1.09E-78 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS19495 4cb3215ba8362cca5bae670ab3554b29 414 SUPERFAMILY SSF53901 215 412 5.4E-75 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS19495 4cb3215ba8362cca5bae670ab3554b29 414 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 4 410 2.4E-199 T 22-04-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 UniPathway: UPA00094 PP4_RS19495 4cb3215ba8362cca5bae670ab3554b29 414 SMART SM00825 Beta-ketoacyl synthase 6 414 8.3E-17 T 22-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain PP4_RS19495 4cb3215ba8362cca5bae670ab3554b29 414 Gene3D G3DSA:3.40.47.10 3 260 4.3E-78 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS19495 4cb3215ba8362cca5bae670ab3554b29 414 PANTHER PTHR11712 3 412 8.2E-220 T 22-04-2016 PP4_RS19495 4cb3215ba8362cca5bae670ab3554b29 414 PIRSF PIRSF000447 1 414 2.5E-194 T 22-04-2016 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 UniPathway: UPA00094 PP4_RS15990 d7986e5d32f7130d915faa9917c65636 232 SUPERFAMILY SSF140931 97 182 6.67E-8 T 22-04-2016 IPR003812 Fido domain PP4_RS15990 d7986e5d32f7130d915faa9917c65636 232 Gene3D G3DSA:1.10.3290.10 107 178 3.5E-6 T 22-04-2016 IPR003812 Fido domain PP4_RS07275 6cf3cae358a8566cb77781272a38ed2e 709 TIGRFAM TIGR01398 FlhA: flagellar biosynthesis protein FlhA 21 705 2.0E-256 T 22-04-2016 IPR006301 Flagellar biosynthesis protein FlhA GO:0016021|GO:0044780 PP4_RS07275 6cf3cae358a8566cb77781272a38ed2e 709 ProSitePatterns PS00994 Bacterial export FHIPEP family signature. 147 170 - T 22-04-2016 IPR025505 FHIPEP conserved site PP4_RS07275 6cf3cae358a8566cb77781272a38ed2e 709 PIRSF PIRSF005419 6 708 9.8E-242 T 22-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 PP4_RS07275 6cf3cae358a8566cb77781272a38ed2e 709 PANTHER PTHR30161:SF1 3 708 0.0 T 22-04-2016 PP4_RS07275 6cf3cae358a8566cb77781272a38ed2e 709 PANTHER PTHR30161 3 708 0.0 T 22-04-2016 PP4_RS07275 6cf3cae358a8566cb77781272a38ed2e 709 Pfam PF00771 FHIPEP family 31 697 9.9E-262 T 22-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 PP4_RS07275 6cf3cae358a8566cb77781272a38ed2e 709 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 242 256 7.1E-55 T 22-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 PP4_RS07275 6cf3cae358a8566cb77781272a38ed2e 709 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 191 208 7.1E-55 T 22-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 PP4_RS07275 6cf3cae358a8566cb77781272a38ed2e 709 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 38 51 7.1E-55 T 22-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 PP4_RS07275 6cf3cae358a8566cb77781272a38ed2e 709 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 75 94 7.1E-55 T 22-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 PP4_RS07275 6cf3cae358a8566cb77781272a38ed2e 709 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 142 158 7.1E-55 T 22-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 PP4_RS07275 6cf3cae358a8566cb77781272a38ed2e 709 PRINTS PR00949 Type III secretion system inner membrane A protein family signature 161 179 7.1E-55 T 22-04-2016 IPR001712 Type III secretion system FHIPEP GO:0009306|GO:0016020 PP4_RS13605 475d9970c60039c2733d28ea8d5bd6ad 403 PIRSF PIRSF000429 3 399 1.6E-19 T 22-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 PP4_RS13605 475d9970c60039c2733d28ea8d5bd6ad 403 Gene3D G3DSA:3.40.47.10 261 384 4.7E-12 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS13605 475d9970c60039c2733d28ea8d5bd6ad 403 Gene3D G3DSA:3.40.47.10 161 200 4.7E-12 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS13605 475d9970c60039c2733d28ea8d5bd6ad 403 PANTHER PTHR18919:SF108 2 402 1.5E-67 T 22-04-2016 PP4_RS13605 475d9970c60039c2733d28ea8d5bd6ad 403 Gene3D G3DSA:3.40.47.10 213 241 4.3E-7 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS13605 475d9970c60039c2733d28ea8d5bd6ad 403 Gene3D G3DSA:3.40.47.10 33 117 4.3E-7 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS13605 475d9970c60039c2733d28ea8d5bd6ad 403 SUPERFAMILY SSF53901 251 392 6.69E-23 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS13605 475d9970c60039c2733d28ea8d5bd6ad 403 PANTHER PTHR18919 2 402 1.5E-67 T 22-04-2016 PP4_RS13605 475d9970c60039c2733d28ea8d5bd6ad 403 SUPERFAMILY SSF53901 7 246 1.03E-15 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS02685 3037772355f605f293ac7ed3f4fb934c 196 Gene3D G3DSA:3.40.50.740 110 181 1.8E-14 T 22-04-2016 PP4_RS02685 3037772355f605f293ac7ed3f4fb934c 196 ProSitePatterns PS00551 Prokaryotic molybdopterin oxidoreductases signature 1. 49 67 - T 22-04-2016 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site GO:0051539 KEGG: 00910+1.7.99.4 PP4_RS02685 3037772355f605f293ac7ed3f4fb934c 196 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 45 104 5.6E-19 T 22-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 PP4_RS02685 3037772355f605f293ac7ed3f4fb934c 196 Pfam PF00384 Molybdopterin oxidoreductase 108 140 1.8E-6 T 22-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 PP4_RS02685 3037772355f605f293ac7ed3f4fb934c 196 Gene3D G3DSA:2.20.25.90 39 109 1.1E-24 T 22-04-2016 PP4_RS02685 3037772355f605f293ac7ed3f4fb934c 196 SMART SM00926 44 105 1.4E-23 T 22-04-2016 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 PP4_RS02685 3037772355f605f293ac7ed3f4fb934c 196 PANTHER PTHR11615 45 196 5.6E-82 T 22-04-2016 PP4_RS02685 3037772355f605f293ac7ed3f4fb934c 196 PANTHER PTHR11615:SF126 45 196 5.6E-82 T 22-04-2016 PP4_RS02685 3037772355f605f293ac7ed3f4fb934c 196 SUPERFAMILY SSF53706 37 196 2.75E-54 T 22-04-2016 PP4_RS09510 f8685367637e27f8910f47f4086a1bf8 427 PANTHER PTHR13847 1 424 5.2E-245 T 22-04-2016 PP4_RS09510 f8685367637e27f8910f47f4086a1bf8 427 Pfam PF01266 FAD dependent oxidoreductase 31 381 8.9E-49 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PP4_RS09510 f8685367637e27f8910f47f4086a1bf8 427 Gene3D G3DSA:3.50.50.60 345 393 8.1E-46 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS09510 f8685367637e27f8910f47f4086a1bf8 427 Gene3D G3DSA:3.50.50.60 18 120 8.1E-46 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS09510 f8685367637e27f8910f47f4086a1bf8 427 Gene3D G3DSA:3.50.50.60 173 252 8.1E-46 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS09510 f8685367637e27f8910f47f4086a1bf8 427 PANTHER PTHR13847:SF210 1 424 5.2E-245 T 22-04-2016 PP4_RS09510 f8685367637e27f8910f47f4086a1bf8 427 SUPERFAMILY SSF51905 30 253 1.25E-40 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS09510 f8685367637e27f8910f47f4086a1bf8 427 SUPERFAMILY SSF51905 345 411 1.25E-40 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS08255 115708f7205ed314f5821d101690a06f 186 Pfam PF03358 NADPH-dependent FMN reductase 7 150 6.1E-37 T 22-04-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 PP4_RS08255 115708f7205ed314f5821d101690a06f 186 Gene3D G3DSA:3.40.50.360 5 184 1.1E-51 T 22-04-2016 IPR029039 Flavoprotein-like domain PP4_RS08255 115708f7205ed314f5821d101690a06f 186 PANTHER PTHR30543:SF6 1 184 5.9E-55 T 22-04-2016 PP4_RS08255 115708f7205ed314f5821d101690a06f 186 PANTHER PTHR30543 1 184 5.9E-55 T 22-04-2016 PP4_RS08255 115708f7205ed314f5821d101690a06f 186 SUPERFAMILY SSF52218 7 176 9.35E-47 T 22-04-2016 IPR029039 Flavoprotein-like domain PP4_RS25720 2f7e53fbd44085dd0d0924aebfb27b42 454 Pfam PF01979 Amidohydrolase family 48 429 1.2E-38 T 22-04-2016 IPR006680 Amidohydrolase-related GO:0016787 PP4_RS25720 2f7e53fbd44085dd0d0924aebfb27b42 454 SUPERFAMILY SSF51338 360 436 9.5E-12 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PP4_RS25720 2f7e53fbd44085dd0d0924aebfb27b42 454 PANTHER PTHR11271 15 454 4.3E-205 T 22-04-2016 PP4_RS25720 2f7e53fbd44085dd0d0924aebfb27b42 454 PANTHER PTHR11271:SF4 15 454 4.3E-205 T 22-04-2016 IPR010252 Formiminoglutamate deiminase PP4_RS25720 2f7e53fbd44085dd0d0924aebfb27b42 454 Gene3D G3DSA:3.20.20.140 54 386 1.1E-77 T 22-04-2016 PP4_RS25720 2f7e53fbd44085dd0d0924aebfb27b42 454 SUPERFAMILY SSF51556 50 375 1.4E-73 T 22-04-2016 IPR032466 Metal-dependent hydrolase PP4_RS25720 2f7e53fbd44085dd0d0924aebfb27b42 454 Gene3D G3DSA:2.30.40.10 48 52 4.6E-4 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PP4_RS25720 2f7e53fbd44085dd0d0924aebfb27b42 454 Gene3D G3DSA:2.30.40.10 387 432 4.6E-4 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PP4_RS25720 2f7e53fbd44085dd0d0924aebfb27b42 454 TIGRFAM TIGR02022 hutF: formiminoglutamate deiminase 1 453 1.9E-230 T 22-04-2016 IPR010252 Formiminoglutamate deiminase PP4_RS17115 a428835594ce23a2b94805175a99a881 149 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 5 137 2.0E-71 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PP4_RS17115 a428835594ce23a2b94805175a99a881 149 SUPERFAMILY SSF52304 5 146 1.31E-62 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PP4_RS17115 a428835594ce23a2b94805175a99a881 149 ProSitePatterns PS01029 Dehydroquinase class II signature. 8 25 - T 22-04-2016 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PP4_RS17115 a428835594ce23a2b94805175a99a881 149 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 149 72.517 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PP4_RS17115 a428835594ce23a2b94805175a99a881 149 Pfam PF01220 Dehydroquinase class II 5 140 1.5E-60 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PP4_RS17115 a428835594ce23a2b94805175a99a881 149 PIRSF PIRSF001399 1 147 1.2E-62 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PP4_RS17115 a428835594ce23a2b94805175a99a881 149 PANTHER PTHR21272 1 149 4.0E-86 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PP4_RS17115 a428835594ce23a2b94805175a99a881 149 Gene3D G3DSA:3.40.50.9100 5 146 7.3E-67 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PP4_RS17115 a428835594ce23a2b94805175a99a881 149 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 5 142 1.1E-60 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PP4_RS20740 b726811c0de8c830ddcbfe443b282814 299 SUPERFAMILY SSF53686 5 296 5.5E-91 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PP4_RS20740 b726811c0de8c830ddcbfe443b282814 299 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 9 285 2.3E-68 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PP4_RS20740 b726811c0de8c830ddcbfe443b282814 299 TIGRFAM TIGR01136 cysKM: cysteine synthase 9 296 3.5E-124 T 22-04-2016 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936|UniPathway: UPA00136 PP4_RS20740 b726811c0de8c830ddcbfe443b282814 299 PANTHER PTHR10314 1 299 2.2E-186 T 22-04-2016 PP4_RS20740 b726811c0de8c830ddcbfe443b282814 299 PANTHER PTHR10314:SF100 1 299 2.2E-186 T 22-04-2016 PP4_RS20740 b726811c0de8c830ddcbfe443b282814 299 Gene3D G3DSA:3.40.50.1100 4 43 2.4E-82 T 22-04-2016 PP4_RS20740 b726811c0de8c830ddcbfe443b282814 299 Gene3D G3DSA:3.40.50.1100 150 297 2.4E-82 T 22-04-2016 PP4_RS20740 b726811c0de8c830ddcbfe443b282814 299 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 34 52 - T 22-04-2016 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 PP4_RS20740 b726811c0de8c830ddcbfe443b282814 299 TIGRFAM TIGR01138 cysM: cysteine synthase B 7 296 4.5E-163 T 22-04-2016 IPR005858 Cysteine synthase CysM GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936|UniPathway: UPA00136 PP4_RS20740 b726811c0de8c830ddcbfe443b282814 299 Gene3D G3DSA:3.40.50.1100 44 144 1.6E-38 T 22-04-2016 PP4_RS06615 3fc48a6ef29e9f6407348b35572d221f 459 Pfam PF00474 Sodium:solute symporter family 32 412 2.8E-38 T 22-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 PP4_RS06615 3fc48a6ef29e9f6407348b35572d221f 459 PANTHER PTHR11819 1 452 7.2E-176 T 22-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 PP4_RS06615 3fc48a6ef29e9f6407348b35572d221f 459 PANTHER PTHR11819:SF141 1 452 7.2E-176 T 22-04-2016 PP4_RS20435 51cd31c9238e1b1a46ebb05be7980c5f 704 PANTHER PTHR32060:SF11 8 624 2.5E-265 T 22-04-2016 PP4_RS20435 51cd31c9238e1b1a46ebb05be7980c5f 704 Gene3D G3DSA:3.30.750.44 210 265 9.6E-5 T 22-04-2016 PP4_RS20435 51cd31c9238e1b1a46ebb05be7980c5f 704 SUPERFAMILY SSF50156 250 334 2.26E-8 T 22-04-2016 IPR001478 PDZ domain GO:0005515 PP4_RS20435 51cd31c9238e1b1a46ebb05be7980c5f 704 PANTHER PTHR32060 8 624 2.5E-265 T 22-04-2016 PP4_RS20435 51cd31c9238e1b1a46ebb05be7980c5f 704 SMART SM00228 259 336 1.6E-4 T 22-04-2016 IPR001478 PDZ domain GO:0005515 PP4_RS20435 51cd31c9238e1b1a46ebb05be7980c5f 704 Pfam PF11818 C-terminal domain of tail specific protease (DUF3340) 554 695 9.2E-38 T 22-04-2016 IPR020992 Tail specific protease, C-terminal PP4_RS20435 51cd31c9238e1b1a46ebb05be7980c5f 704 Gene3D G3DSA:3.90.226.10 352 553 6.5E-61 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS20435 51cd31c9238e1b1a46ebb05be7980c5f 704 SMART SM00245 342 551 1.7E-54 T 22-04-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 PP4_RS20435 51cd31c9238e1b1a46ebb05be7980c5f 704 SUPERFAMILY SSF52096 370 555 3.15E-69 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS20435 51cd31c9238e1b1a46ebb05be7980c5f 704 SUPERFAMILY SSF52096 186 277 3.15E-69 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS20435 51cd31c9238e1b1a46ebb05be7980c5f 704 Pfam PF03572 Peptidase family S41 376 549 3.9E-52 T 22-04-2016 IPR005151 Tail specific protease GO:0006508|GO:0008236 PP4_RS20435 51cd31c9238e1b1a46ebb05be7980c5f 704 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 215 571 4.1E-95 T 22-04-2016 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 PP4_RS20435 51cd31c9238e1b1a46ebb05be7980c5f 704 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 252 332 8.0E-10 T 22-04-2016 IPR001478 PDZ domain GO:0005515 PP4_RS20435 51cd31c9238e1b1a46ebb05be7980c5f 704 Gene3D G3DSA:2.30.42.10 266 351 1.7E-15 T 22-04-2016 IPR001478 PDZ domain GO:0005515 PP4_RS16830 42e395b119790c268e8f517e11891fd3 438 Gene3D G3DSA:1.20.1250.20 9 206 1.3E-40 T 22-04-2016 PP4_RS16830 42e395b119790c268e8f517e11891fd3 438 PIRSF PIRSF002808 1 426 2.4E-78 T 22-04-2016 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 PP4_RS16830 42e395b119790c268e8f517e11891fd3 438 PANTHER PTHR11662:SF141 1 421 1.2E-134 T 22-04-2016 PP4_RS16830 42e395b119790c268e8f517e11891fd3 438 PANTHER PTHR11662 1 421 1.2E-134 T 22-04-2016 PP4_RS16830 42e395b119790c268e8f517e11891fd3 438 SUPERFAMILY SSF103473 6 412 2.09E-55 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS16830 42e395b119790c268e8f517e11891fd3 438 Gene3D G3DSA:1.20.1250.20 224 417 1.3E-29 T 22-04-2016 PP4_RS16830 42e395b119790c268e8f517e11891fd3 438 Pfam PF07690 Major Facilitator Superfamily 20 258 7.0E-31 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS21785 5f3ea3fee7521fc067f4fee1538affde 162 PANTHER PTHR36115:SF2 7 160 3.4E-57 T 22-04-2016 PP4_RS21785 5f3ea3fee7521fc067f4fee1538affde 162 Pfam PF06271 RDD family 15 150 2.4E-27 T 22-04-2016 IPR010432 RDD PP4_RS21785 5f3ea3fee7521fc067f4fee1538affde 162 PANTHER PTHR36115 7 160 3.4E-57 T 22-04-2016 PP4_RS15665 27d304ede1f7c4bb0188975d830e531a 498 SMART SM00062 66 309 1.0E-6 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS15665 27d304ede1f7c4bb0188975d830e531a 498 SUPERFAMILY SSF53850 63 290 1.17E-26 T 22-04-2016 PP4_RS15665 27d304ede1f7c4bb0188975d830e531a 498 Gene3D G3DSA:1.10.530.10 327 486 1.1E-31 T 22-04-2016 PP4_RS15665 27d304ede1f7c4bb0188975d830e531a 498 Gene3D G3DSA:3.40.190.10 65 150 1.8E-12 T 22-04-2016 PP4_RS15665 27d304ede1f7c4bb0188975d830e531a 498 Gene3D G3DSA:3.40.190.10 263 294 1.8E-12 T 22-04-2016 PP4_RS15665 27d304ede1f7c4bb0188975d830e531a 498 Pfam PF01464 Transglycosylase SLT domain 333 447 1.8E-13 T 22-04-2016 IPR008258 Transglycosylase SLT domain 1 PP4_RS15665 27d304ede1f7c4bb0188975d830e531a 498 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 108 290 2.6E-17 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS15665 27d304ede1f7c4bb0188975d830e531a 498 Gene3D G3DSA:3.40.190.10 151 246 7.9E-7 T 22-04-2016 PP4_RS15665 27d304ede1f7c4bb0188975d830e531a 498 PANTHER PTHR21666 313 482 3.8E-27 T 22-04-2016 PP4_RS15665 27d304ede1f7c4bb0188975d830e531a 498 SUPERFAMILY SSF53955 329 485 1.03E-29 T 22-04-2016 IPR023346 Lysozyme-like domain PP4_RS14310 06d99c24b0db65f7fbe674578844ca6d 320 PANTHER PTHR30273 3 317 1.1E-95 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS14310 06d99c24b0db65f7fbe674578844ca6d 320 PANTHER PTHR30273:SF3 3 317 1.1E-95 T 22-04-2016 PP4_RS14310 06d99c24b0db65f7fbe674578844ca6d 320 Pfam PF04773 FecR protein 111 200 1.9E-19 T 22-04-2016 IPR006860 FecR protein PP4_RS14310 06d99c24b0db65f7fbe674578844ca6d 320 PIRSF PIRSF018266 2 316 1.3E-85 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS14310 06d99c24b0db65f7fbe674578844ca6d 320 Pfam PF16220 Domain of unknown function (DUF4880) 12 52 5.7E-12 T 22-04-2016 IPR032623 FecR, N-terminal PP4_RS02525 9d2ff7b6bb62417b567367edfbc90df4 91 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 2 91 3.8E-43 T 22-04-2016 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 PP4_RS02525 9d2ff7b6bb62417b567367edfbc90df4 91 SUPERFAMILY SSF54570 3 83 3.4E-34 T 22-04-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 PP4_RS02525 9d2ff7b6bb62417b567367edfbc90df4 91 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 22-04-2016 IPR020934 Ribosomal protein S19 conserved site GO:0003723 PP4_RS02525 9d2ff7b6bb62417b567367edfbc90df4 91 PIRSF PIRSF002144 1 91 9.2E-31 T 22-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 PP4_RS02525 9d2ff7b6bb62417b567367edfbc90df4 91 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 24.389 T 22-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 PP4_RS02525 9d2ff7b6bb62417b567367edfbc90df4 91 PANTHER PTHR11880 2 91 6.3E-51 T 22-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 PP4_RS02525 9d2ff7b6bb62417b567367edfbc90df4 91 Pfam PF00203 Ribosomal protein S19 3 83 1.6E-35 T 22-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 PP4_RS02525 9d2ff7b6bb62417b567367edfbc90df4 91 Gene3D G3DSA:3.30.860.10 2 90 8.1E-39 T 22-04-2016 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 PP4_RS02525 9d2ff7b6bb62417b567367edfbc90df4 91 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 1.9E-22 T 22-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 PP4_RS02525 9d2ff7b6bb62417b567367edfbc90df4 91 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 1.9E-22 T 22-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 PP4_RS02525 9d2ff7b6bb62417b567367edfbc90df4 91 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 1.9E-22 T 22-04-2016 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 PP4_RS00300 dac8bae7833e790360bef3667c571fe6 365 Gene3D G3DSA:3.40.50.450 122 300 7.6E-16 T 22-04-2016 PP4_RS00300 dac8bae7833e790360bef3667c571fe6 365 PANTHER PTHR32039 18 363 3.5E-105 T 22-04-2016 PP4_RS00300 dac8bae7833e790360bef3667c571fe6 365 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 79 297 3.8E-78 T 22-04-2016 IPR003488 DNA recombination-mediator protein A GO:0009294 PP4_RS00300 dac8bae7833e790360bef3667c571fe6 365 SUPERFAMILY SSF102405 90 297 7.94E-48 T 22-04-2016 PP4_RS00300 dac8bae7833e790360bef3667c571fe6 365 PANTHER PTHR32039:SF8 18 363 3.5E-105 T 22-04-2016 PP4_RS00300 dac8bae7833e790360bef3667c571fe6 365 Pfam PF02481 DNA recombination-mediator protein A 81 288 5.2E-75 T 22-04-2016 IPR003488 DNA recombination-mediator protein A GO:0009294 PP4_RS02905 db411841ac987919688982ee30993e45 216 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 11 205 2.4E-70 T 22-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PP4_RS02905 db411841ac987919688982ee30993e45 216 SUPERFAMILY SSF55821 6 206 1.65E-77 T 22-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain PP4_RS02905 db411841ac987919688982ee30993e45 216 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 14 204 1.1E-75 T 22-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PP4_RS02905 db411841ac987919688982ee30993e45 216 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 7 209 41.112 T 22-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PP4_RS02905 db411841ac987919688982ee30993e45 216 PANTHER PTHR21327:SF15 12 214 6.2E-99 T 22-04-2016 PP4_RS02905 db411841ac987919688982ee30993e45 216 PANTHER PTHR21327 12 214 6.2E-99 T 22-04-2016 PP4_RS02905 db411841ac987919688982ee30993e45 216 Gene3D G3DSA:3.90.870.10 5 211 8.9E-85 T 22-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain PP4_RS02710 377d9159a26b3e57c202a0d83e96d14e 475 Gene3D G3DSA:3.40.640.10 89 321 8.5E-33 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS02710 377d9159a26b3e57c202a0d83e96d14e 475 SUPERFAMILY SSF53383 80 405 2.12E-48 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS02710 377d9159a26b3e57c202a0d83e96d14e 475 Pfam PF03841 L-seryl-tRNA selenium transferase 85 456 7.8E-170 T 22-04-2016 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1|UniPathway: UPA00906 PP4_RS02710 377d9159a26b3e57c202a0d83e96d14e 475 PANTHER PTHR32328 4 459 2.4E-210 T 22-04-2016 PP4_RS02710 377d9159a26b3e57c202a0d83e96d14e 475 PANTHER PTHR32328:SF0 4 459 2.4E-210 T 22-04-2016 PP4_RS02710 377d9159a26b3e57c202a0d83e96d14e 475 TIGRFAM TIGR00474 selA: L-seryl-tRNA(Sec) selenium transferase 11 461 1.0E-180 T 22-04-2016 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1|UniPathway: UPA00906 PP4_RS02710 377d9159a26b3e57c202a0d83e96d14e 475 Hamap MF_00423 L-seryl-tRNA(Sec) selenium transferase [selA]. 1 472 239.248 T 22-04-2016 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1|UniPathway: UPA00906 PP4_RS02710 377d9159a26b3e57c202a0d83e96d14e 475 Pfam PF12390 Selenocysteine synthase N terminal 11 48 3.7E-8 T 22-04-2016 IPR025862 L-seryl-tRNA selenium transferase N-terminal domain KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1|UniPathway: UPA00906 PP4_RS09575 03f82dba00c4e450d025eb2e121134e5 495 Pfam PF00171 Aldehyde dehydrogenase family 30 491 9.9E-156 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PP4_RS09575 03f82dba00c4e450d025eb2e121134e5 495 PANTHER PTHR11699:SF46 1 495 3.3E-200 T 22-04-2016 PP4_RS09575 03f82dba00c4e450d025eb2e121134e5 495 Gene3D G3DSA:3.40.605.10 17 281 3.8E-90 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS09575 03f82dba00c4e450d025eb2e121134e5 495 Gene3D G3DSA:3.40.309.10 282 466 1.6E-57 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PP4_RS09575 03f82dba00c4e450d025eb2e121134e5 495 SUPERFAMILY SSF53720 10 494 2.49E-156 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS09575 03f82dba00c4e450d025eb2e121134e5 495 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 267 274 - T 22-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 PP4_RS09575 03f82dba00c4e450d025eb2e121134e5 495 PANTHER PTHR11699 1 495 3.3E-200 T 22-04-2016 PP4_RS09575 03f82dba00c4e450d025eb2e121134e5 495 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 295 306 - T 22-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 PP4_RS04630 012b180723291eaea6e7b83c7ec70afb 484 Gene3D G3DSA:2.40.33.10 75 169 3.2E-26 T 22-04-2016 IPR015806 Pyruvate kinase, beta-barrel insert domain GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS04630 012b180723291eaea6e7b83c7ec70afb 484 SUPERFAMILY SSF52935 327 479 1.24E-38 T 22-04-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS04630 012b180723291eaea6e7b83c7ec70afb 484 SUPERFAMILY SSF50800 72 166 1.29E-24 T 22-04-2016 IPR011037 Pyruvate kinase-like, insert domain PP4_RS04630 012b180723291eaea6e7b83c7ec70afb 484 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 4 478 1.3E-160 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS04630 012b180723291eaea6e7b83c7ec70afb 484 Gene3D G3DSA:3.20.20.60 170 329 3.9E-95 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PP4_RS04630 012b180723291eaea6e7b83c7ec70afb 484 Gene3D G3DSA:3.20.20.60 4 74 3.9E-95 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PP4_RS04630 012b180723291eaea6e7b83c7ec70afb 484 SUPERFAMILY SSF51621 169 344 1.67E-91 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PP4_RS04630 012b180723291eaea6e7b83c7ec70afb 484 SUPERFAMILY SSF51621 2 77 1.67E-91 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PP4_RS04630 012b180723291eaea6e7b83c7ec70afb 484 PRINTS PR01050 Pyruvate kinase family signature 221 247 3.5E-51 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS04630 012b180723291eaea6e7b83c7ec70afb 484 PRINTS PR01050 Pyruvate kinase family signature 61 77 3.5E-51 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS04630 012b180723291eaea6e7b83c7ec70afb 484 PRINTS PR01050 Pyruvate kinase family signature 273 297 3.5E-51 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS04630 012b180723291eaea6e7b83c7ec70afb 484 PRINTS PR01050 Pyruvate kinase family signature 317 333 3.5E-51 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS04630 012b180723291eaea6e7b83c7ec70afb 484 PRINTS PR01050 Pyruvate kinase family signature 188 202 3.5E-51 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS04630 012b180723291eaea6e7b83c7ec70afb 484 PRINTS PR01050 Pyruvate kinase family signature 298 316 3.5E-51 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS04630 012b180723291eaea6e7b83c7ec70afb 484 PRINTS PR01050 Pyruvate kinase family signature 248 272 3.5E-51 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS04630 012b180723291eaea6e7b83c7ec70afb 484 Pfam PF00224 Pyruvate kinase, barrel domain 3 342 7.9E-122 T 22-04-2016 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS04630 012b180723291eaea6e7b83c7ec70afb 484 Gene3D G3DSA:3.40.1380.20 330 478 2.7E-39 T 22-04-2016 IPR015794 Pyruvate kinase, alpha/beta GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS04630 012b180723291eaea6e7b83c7ec70afb 484 PANTHER PTHR11817:SF17 1 483 1.5E-284 T 22-04-2016 PP4_RS04630 012b180723291eaea6e7b83c7ec70afb 484 Pfam PF02887 Pyruvate kinase, alpha/beta domain 361 476 2.1E-28 T 22-04-2016 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS04630 012b180723291eaea6e7b83c7ec70afb 484 ProSitePatterns PS00110 Pyruvate kinase active site signature. 216 228 - T 22-04-2016 IPR018209 Pyruvate kinase, active site GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS04630 012b180723291eaea6e7b83c7ec70afb 484 PANTHER PTHR11817 1 483 1.5E-284 T 22-04-2016 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS05170 cbec2b0d0e6cd3f0cc91bed87635f64a 251 ProSitePatterns PS00894 DeoR-type HTH domain signature. 6 40 - T 22-04-2016 IPR018356 Transcription regulator, HTH DeoR-type, conserved site GO:0003700|GO:0006355 PP4_RS05170 cbec2b0d0e6cd3f0cc91bed87635f64a 251 Gene3D G3DSA:3.30.750.70 71 147 4.0E-13 T 22-04-2016 PP4_RS05170 cbec2b0d0e6cd3f0cc91bed87635f64a 251 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 24 38 5.4E-11 T 22-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 PP4_RS05170 cbec2b0d0e6cd3f0cc91bed87635f64a 251 PRINTS PR00037 LacR bacterial regulatory protein HTH signature 38 56 5.4E-11 T 22-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 PP4_RS05170 cbec2b0d0e6cd3f0cc91bed87635f64a 251 Gene3D G3DSA:1.10.10.10 1 58 1.2E-11 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS05170 cbec2b0d0e6cd3f0cc91bed87635f64a 251 SUPERFAMILY SSF46785 3 67 5.62E-15 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS05170 cbec2b0d0e6cd3f0cc91bed87635f64a 251 SUPERFAMILY SSF100950 73 233 1.07E-29 T 22-04-2016 PP4_RS05170 cbec2b0d0e6cd3f0cc91bed87635f64a 251 SMART SM00420 6 58 5.2E-23 T 22-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 PP4_RS05170 cbec2b0d0e6cd3f0cc91bed87635f64a 251 SMART SM01134 72 232 4.4E-70 T 22-04-2016 PP4_RS05170 cbec2b0d0e6cd3f0cc91bed87635f64a 251 Pfam PF00455 DeoR C terminal sensor domain 75 231 1.8E-52 T 22-04-2016 IPR014036 DeoR C-terminal sensor domain PP4_RS05170 cbec2b0d0e6cd3f0cc91bed87635f64a 251 PANTHER PTHR30363:SF1 1 251 1.7E-106 T 22-04-2016 PP4_RS05170 cbec2b0d0e6cd3f0cc91bed87635f64a 251 Pfam PF08220 DeoR-like helix-turn-helix domain 6 61 4.9E-21 T 22-04-2016 IPR001034 DeoR-type HTH domain GO:0003700|GO:0005622|GO:0006355 PP4_RS05170 cbec2b0d0e6cd3f0cc91bed87635f64a 251 PANTHER PTHR30363 1 251 1.7E-106 T 22-04-2016 PP4_RS22985 cfde5c04e706d73fb47a6e44ba2a3854 476 Gene3D G3DSA:3.40.605.10 3 261 5.1E-91 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS22985 cfde5c04e706d73fb47a6e44ba2a3854 476 Pfam PF00171 Aldehyde dehydrogenase family 11 471 1.2E-162 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PP4_RS22985 cfde5c04e706d73fb47a6e44ba2a3854 476 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 247 254 - T 22-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 PP4_RS22985 cfde5c04e706d73fb47a6e44ba2a3854 476 PANTHER PTHR11699 1 472 5.1E-202 T 22-04-2016 PP4_RS22985 cfde5c04e706d73fb47a6e44ba2a3854 476 Gene3D G3DSA:3.40.309.10 262 441 3.5E-64 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PP4_RS22985 cfde5c04e706d73fb47a6e44ba2a3854 476 SUPERFAMILY SSF53720 2 473 1.24E-158 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS15245 42f73e7d4dc8b46f632eeb2799d2e025 732 PANTHER PTHR11908 8 732 1.2E-297 T 22-04-2016 PP4_RS15245 42f73e7d4dc8b46f632eeb2799d2e025 732 Gene3D G3DSA:3.90.1170.50 5 123 6.3E-32 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead PP4_RS15245 42f73e7d4dc8b46f632eeb2799d2e025 732 Gene3D G3DSA:3.30.365.10 124 169 1.1E-5 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS15245 42f73e7d4dc8b46f632eeb2799d2e025 732 Gene3D G3DSA:3.30.365.10 277 304 1.1E-5 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS15245 42f73e7d4dc8b46f632eeb2799d2e025 732 Gene3D G3DSA:3.30.365.10 440 601 2.1E-29 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS15245 42f73e7d4dc8b46f632eeb2799d2e025 732 Gene3D G3DSA:3.30.365.10 350 439 2.6E-56 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS15245 42f73e7d4dc8b46f632eeb2799d2e025 732 Gene3D G3DSA:3.30.365.10 602 732 2.6E-56 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS15245 42f73e7d4dc8b46f632eeb2799d2e025 732 SUPERFAMILY SSF54665 6 146 4.71E-34 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead PP4_RS15245 42f73e7d4dc8b46f632eeb2799d2e025 732 SMART SM01008 22 136 1.3E-34 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead PP4_RS15245 42f73e7d4dc8b46f632eeb2799d2e025 732 SUPERFAMILY SSF56003 149 732 1.57E-158 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS15245 42f73e7d4dc8b46f632eeb2799d2e025 732 PANTHER PTHR11908:SF71 8 732 1.2E-297 T 22-04-2016 PP4_RS15245 42f73e7d4dc8b46f632eeb2799d2e025 732 Gene3D G3DSA:3.30.365.10 170 275 4.4E-32 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS15245 42f73e7d4dc8b46f632eeb2799d2e025 732 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 22 135 9.9E-19 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead PP4_RS15245 42f73e7d4dc8b46f632eeb2799d2e025 732 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 156 674 7.7E-109 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS14650 76cab95e7c9d5a90286b09580cb2a849 324 Gene3D G3DSA:3.20.20.70 3 321 2.2E-132 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS14650 76cab95e7c9d5a90286b09580cb2a849 324 PIRSF PIRSF001415 1 323 9.9E-138 T 22-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PP4_RS14650 76cab95e7c9d5a90286b09580cb2a849 324 Pfam PF00490 Delta-aminolevulinic acid dehydratase 8 321 3.8E-129 T 22-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PP4_RS14650 76cab95e7c9d5a90286b09580cb2a849 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 123 137 6.0E-54 T 22-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PP4_RS14650 76cab95e7c9d5a90286b09580cb2a849 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 242 258 6.0E-54 T 22-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PP4_RS14650 76cab95e7c9d5a90286b09580cb2a849 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 191 210 6.0E-54 T 22-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PP4_RS14650 76cab95e7c9d5a90286b09580cb2a849 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 297 316 6.0E-54 T 22-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PP4_RS14650 76cab95e7c9d5a90286b09580cb2a849 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 267 282 6.0E-54 T 22-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PP4_RS14650 76cab95e7c9d5a90286b09580cb2a849 324 PRINTS PR00144 Delta-aminolevulinic acid dehydratase signature 153 172 6.0E-54 T 22-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PP4_RS14650 76cab95e7c9d5a90286b09580cb2a849 324 ProSitePatterns PS00169 Delta-aminolevulinic acid dehydratase active site. 242 254 - T 22-04-2016 IPR030656 Delta-aminolevulinic acid dehydratase, active site KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PP4_RS14650 76cab95e7c9d5a90286b09580cb2a849 324 PANTHER PTHR11458:SF1 9 324 1.2E-209 T 22-04-2016 PP4_RS14650 76cab95e7c9d5a90286b09580cb2a849 324 PANTHER PTHR11458 9 324 1.2E-209 T 22-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PP4_RS14650 76cab95e7c9d5a90286b09580cb2a849 324 SMART SM01004 5 323 5.2E-200 T 22-04-2016 IPR001731 Delta-aminolevulinic acid dehydratase GO:0004655|GO:0033014|GO:0046872 KEGG: 00860+4.2.1.24|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PP4_RS14650 76cab95e7c9d5a90286b09580cb2a849 324 SUPERFAMILY SSF51569 5 321 2.64E-125 T 22-04-2016 PP4_RS14520 89d1d2d393b3989e635210b53f6764c4 305 SUPERFAMILY SSF53686 3 303 5.24E-69 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PP4_RS14520 89d1d2d393b3989e635210b53f6764c4 305 Gene3D G3DSA:3.40.50.1100 93 303 2.8E-58 T 22-04-2016 PP4_RS14520 89d1d2d393b3989e635210b53f6764c4 305 PANTHER PTHR10314:SF85 3 305 3.5E-137 T 22-04-2016 PP4_RS14520 89d1d2d393b3989e635210b53f6764c4 305 PANTHER PTHR10314 3 305 3.5E-137 T 22-04-2016 PP4_RS14520 89d1d2d393b3989e635210b53f6764c4 305 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 5 288 3.2E-68 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PP4_RS14520 89d1d2d393b3989e635210b53f6764c4 305 Gene3D G3DSA:3.40.50.1100 18 92 2.4E-6 T 22-04-2016 PP4_RS21850 4d16c9544d2b447215f156030f08e3ce 216 SUPERFAMILY SSF48008 93 215 5.23E-23 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PP4_RS21850 4d16c9544d2b447215f156030f08e3ce 216 Gene3D G3DSA:1.10.10.10 7 74 1.2E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS21850 4d16c9544d2b447215f156030f08e3ce 216 Pfam PF07729 FCD domain 95 215 6.6E-25 T 22-04-2016 IPR011711 GntR, C-terminal PP4_RS21850 4d16c9544d2b447215f156030f08e3ce 216 Gene3D G3DSA:1.20.120.530 93 215 6.4E-24 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PP4_RS21850 4d16c9544d2b447215f156030f08e3ce 216 PANTHER PTHR11751:SF342 8 109 2.6E-32 T 22-04-2016 PP4_RS21850 4d16c9544d2b447215f156030f08e3ce 216 SMART SM00345 14 73 2.3E-16 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS21850 4d16c9544d2b447215f156030f08e3ce 216 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 72 5.2E-17 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS21850 4d16c9544d2b447215f156030f08e3ce 216 SMART SM00895 93 216 9.4E-21 T 22-04-2016 IPR011711 GntR, C-terminal PP4_RS21850 4d16c9544d2b447215f156030f08e3ce 216 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 33 47 2.6E-9 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS21850 4d16c9544d2b447215f156030f08e3ce 216 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 47 63 2.6E-9 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS21850 4d16c9544d2b447215f156030f08e3ce 216 SUPERFAMILY SSF46785 5 77 4.42E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS21850 4d16c9544d2b447215f156030f08e3ce 216 PANTHER PTHR11751 8 109 2.6E-32 T 22-04-2016 PP4_RS27145 7c9272ff1c97ca1819ef717f69ebc510 762 SUPERFAMILY SSF50978 108 375 4.39E-8 T 22-04-2016 IPR017986 WD40-repeat-containing domain GO:0005515 PP4_RS27145 7c9272ff1c97ca1819ef717f69ebc510 762 PANTHER PTHR30425 593 762 2.7E-173 T 22-04-2016 PP4_RS27145 7c9272ff1c97ca1819ef717f69ebc510 762 PANTHER PTHR30425 318 527 2.7E-173 T 22-04-2016 PP4_RS27145 7c9272ff1c97ca1819ef717f69ebc510 762 PANTHER PTHR30425:SF3 593 762 2.7E-173 T 22-04-2016 PP4_RS27145 7c9272ff1c97ca1819ef717f69ebc510 762 PANTHER PTHR30425:SF3 318 527 2.7E-173 T 22-04-2016 PP4_RS27145 7c9272ff1c97ca1819ef717f69ebc510 762 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 479 757 2.7E-9 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS27145 7c9272ff1c97ca1819ef717f69ebc510 762 Gene3D G3DSA:1.10.3720.10 598 759 1.9E-40 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS27145 7c9272ff1c97ca1819ef717f69ebc510 762 Gene3D G3DSA:1.10.3720.10 443 525 1.9E-40 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS27145 7c9272ff1c97ca1819ef717f69ebc510 762 Gene3D G3DSA:2.130.10.10 107 368 4.5E-6 T 22-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 PP4_RS27145 7c9272ff1c97ca1819ef717f69ebc510 762 SUPERFAMILY SSF161098 458 524 2.62E-17 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS27145 7c9272ff1c97ca1819ef717f69ebc510 762 SUPERFAMILY SSF161098 608 694 2.62E-17 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS17525 5215f8a28f1eda1a4e3b5c6d2fc85687 447 TIGRFAM TIGR00553 pabB: aminodeoxychorismate synthase, component I 93 440 2.4E-107 T 22-04-2016 IPR005802 Para-aminobenzoate synthase, component I GO:0009396 KEGG: 00790+2.6.1.85|MetaCyc: PWY-6543|UniPathway: UPA00077 PP4_RS17525 5215f8a28f1eda1a4e3b5c6d2fc85687 447 SUPERFAMILY SSF56322 5 445 5.63E-139 T 22-04-2016 IPR005801 ADC synthase GO:0009058 PP4_RS17525 5215f8a28f1eda1a4e3b5c6d2fc85687 447 PRINTS PR00095 Anthranilate synthase component I signature 393 407 1.6E-14 T 22-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 PP4_RS17525 5215f8a28f1eda1a4e3b5c6d2fc85687 447 PRINTS PR00095 Anthranilate synthase component I signature 378 392 1.6E-14 T 22-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 PP4_RS17525 5215f8a28f1eda1a4e3b5c6d2fc85687 447 PRINTS PR00095 Anthranilate synthase component I signature 284 297 1.6E-14 T 22-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 PP4_RS17525 5215f8a28f1eda1a4e3b5c6d2fc85687 447 PRINTS PR00095 Anthranilate synthase component I signature 298 311 1.6E-14 T 22-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 PP4_RS17525 5215f8a28f1eda1a4e3b5c6d2fc85687 447 PANTHER PTHR11236 9 445 2.6E-154 T 22-04-2016 PP4_RS17525 5215f8a28f1eda1a4e3b5c6d2fc85687 447 Pfam PF04715 Anthranilate synthase component I, N terminal region 14 138 2.1E-21 T 22-04-2016 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058|GO:0016833 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 PP4_RS17525 5215f8a28f1eda1a4e3b5c6d2fc85687 447 Pfam PF00425 chorismate binding enzyme 183 436 1.2E-96 T 22-04-2016 IPR015890 Chorismate-utilising enzyme, C-terminal PP4_RS17525 5215f8a28f1eda1a4e3b5c6d2fc85687 447 Gene3D G3DSA:3.60.120.10 9 445 3.0E-146 T 22-04-2016 IPR005801 ADC synthase GO:0009058 PP4_RS10300 d59dee1570fcc8f9589079d24d9a3c17 1155 SUPERFAMILY SSF55781 242 415 8.59E-22 T 22-04-2016 IPR029016 GAF domain-like PP4_RS10300 d59dee1570fcc8f9589079d24d9a3c17 1155 Gene3D G3DSA:3.40.50.2300 1030 1151 1.7E-41 T 22-04-2016 PP4_RS10300 d59dee1570fcc8f9589079d24d9a3c17 1155 SUPERFAMILY SSF55874 543 711 5.37E-45 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS10300 d59dee1570fcc8f9589079d24d9a3c17 1155 Gene3D G3DSA:3.30.450.40 239 400 1.4E-18 T 22-04-2016 IPR029016 GAF domain-like PP4_RS10300 d59dee1570fcc8f9589079d24d9a3c17 1155 PRINTS PR00344 Bacterial sensor protein C-terminal signature 673 691 5.2E-15 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS10300 d59dee1570fcc8f9589079d24d9a3c17 1155 PRINTS PR00344 Bacterial sensor protein C-terminal signature 697 710 5.2E-15 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS10300 d59dee1570fcc8f9589079d24d9a3c17 1155 PRINTS PR00344 Bacterial sensor protein C-terminal signature 656 666 5.2E-15 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS10300 d59dee1570fcc8f9589079d24d9a3c17 1155 PRINTS PR00344 Bacterial sensor protein C-terminal signature 638 652 5.2E-15 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS10300 d59dee1570fcc8f9589079d24d9a3c17 1155 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 602 711 1.1E-26 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS10300 d59dee1570fcc8f9589079d24d9a3c17 1155 SMART SM00065 253 397 1.9E-10 T 22-04-2016 IPR003018 GAF domain GO:0005515 PP4_RS10300 d59dee1570fcc8f9589079d24d9a3c17 1155 Gene3D G3DSA:3.40.50.2300 762 878 6.7E-24 T 22-04-2016 PP4_RS10300 d59dee1570fcc8f9589079d24d9a3c17 1155 PANTHER PTHR24423 26 33 6.6E-142 T 22-04-2016 PP4_RS10300 d59dee1570fcc8f9589079d24d9a3c17 1155 PANTHER PTHR24423 153 172 6.6E-142 T 22-04-2016 PP4_RS10300 d59dee1570fcc8f9589079d24d9a3c17 1155 PANTHER PTHR24423 1030 1155 6.6E-142 T 22-04-2016 PP4_RS10300 d59dee1570fcc8f9589079d24d9a3c17 1155 PANTHER PTHR24423 261 367 6.6E-142 T 22-04-2016 PP4_RS10300 d59dee1570fcc8f9589079d24d9a3c17 1155 PANTHER PTHR24423 465 749 6.6E-142 T 22-04-2016 PP4_RS10300 d59dee1570fcc8f9589079d24d9a3c17 1155 SUPERFAMILY SSF52172 1029 1150 1.24E-39 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS10300 d59dee1570fcc8f9589079d24d9a3c17 1155 Pfam PF13185 GAF domain 257 388 8.1E-14 T 22-04-2016 IPR003018 GAF domain GO:0005515 PP4_RS10300 d59dee1570fcc8f9589079d24d9a3c17 1155 Pfam PF00512 His Kinase A (phospho-acceptor) domain 487 554 2.5E-16 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS10300 d59dee1570fcc8f9589079d24d9a3c17 1155 Pfam PF05227 CHASE3 domain 44 178 1.7E-40 T 22-04-2016 IPR007891 CHASE3 PP4_RS10300 d59dee1570fcc8f9589079d24d9a3c17 1155 SUPERFAMILY SSF52172 763 878 1.35E-26 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS10300 d59dee1570fcc8f9589079d24d9a3c17 1155 SMART SM00387 601 713 2.0E-35 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS10300 d59dee1570fcc8f9589079d24d9a3c17 1155 Gene3D G3DSA:3.30.565.10 555 714 9.9E-44 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS10300 d59dee1570fcc8f9589079d24d9a3c17 1155 Gene3D G3DSA:1.10.287.130 477 550 9.8E-16 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS10300 d59dee1570fcc8f9589079d24d9a3c17 1155 SMART SM00388 486 554 5.9E-21 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS10300 d59dee1570fcc8f9589079d24d9a3c17 1155 SUPERFAMILY SSF52172 885 1015 3.84E-18 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS10300 d59dee1570fcc8f9589079d24d9a3c17 1155 Gene3D G3DSA:3.40.50.2300 885 1009 2.3E-18 T 22-04-2016 PP4_RS10300 d59dee1570fcc8f9589079d24d9a3c17 1155 SMART SM00448 885 999 5.0E-8 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS10300 d59dee1570fcc8f9589079d24d9a3c17 1155 SMART SM00448 763 873 1.2E-18 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS10300 d59dee1570fcc8f9589079d24d9a3c17 1155 SMART SM00448 1031 1145 2.3E-40 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS10300 d59dee1570fcc8f9589079d24d9a3c17 1155 Pfam PF00072 Response regulator receiver domain 1033 1145 3.3E-29 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS10300 d59dee1570fcc8f9589079d24d9a3c17 1155 Pfam PF00072 Response regulator receiver domain 887 969 1.6E-14 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS10300 d59dee1570fcc8f9589079d24d9a3c17 1155 Pfam PF00072 Response regulator receiver domain 765 872 9.8E-16 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS10300 d59dee1570fcc8f9589079d24d9a3c17 1155 SUPERFAMILY SSF47384 471 555 4.51E-20 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS17840 0afe3fd629d5eebe4a80139e1666cdfb 746 PANTHER PTHR30069 346 647 1.2E-222 T 22-04-2016 PP4_RS17840 0afe3fd629d5eebe4a80139e1666cdfb 746 PANTHER PTHR30069 55 288 1.2E-222 T 22-04-2016 PP4_RS17840 0afe3fd629d5eebe4a80139e1666cdfb 746 PANTHER PTHR30069:SF8 346 647 1.2E-222 T 22-04-2016 PP4_RS17840 0afe3fd629d5eebe4a80139e1666cdfb 746 PANTHER PTHR30069:SF8 55 288 1.2E-222 T 22-04-2016 PP4_RS17840 0afe3fd629d5eebe4a80139e1666cdfb 746 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 66 746 6.0E-82 T 22-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 PP4_RS17840 0afe3fd629d5eebe4a80139e1666cdfb 746 SUPERFAMILY SSF56935 55 746 1.74E-132 T 22-04-2016 PP4_RS17840 0afe3fd629d5eebe4a80139e1666cdfb 746 Gene3D G3DSA:2.170.130.10 66 182 2.7E-36 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS17840 0afe3fd629d5eebe4a80139e1666cdfb 746 Pfam PF00593 TonB dependent receptor 473 744 2.7E-38 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS17840 0afe3fd629d5eebe4a80139e1666cdfb 746 Gene3D G3DSA:2.40.170.20 183 746 3.5E-119 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS17840 0afe3fd629d5eebe4a80139e1666cdfb 746 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 729 746 - T 22-04-2016 IPR010917 TonB-dependent receptor, conserved site PP4_RS17840 0afe3fd629d5eebe4a80139e1666cdfb 746 Pfam PF07715 TonB-dependent Receptor Plug Domain 66 179 6.9E-25 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS07850 2d0f25b8fb2266493f3d119a1472604b 227 Pfam PF00072 Response regulator receiver domain 3 112 9.0E-27 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS07850 2d0f25b8fb2266493f3d119a1472604b 227 SUPERFAMILY SSF52172 1 169 7.62E-38 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS07850 2d0f25b8fb2266493f3d119a1472604b 227 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 216 1.4E-21 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS07850 2d0f25b8fb2266493f3d119a1472604b 227 SMART SM00862 145 216 2.9E-26 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS07850 2d0f25b8fb2266493f3d119a1472604b 227 PANTHER PTHR26402 1 221 2.7E-89 T 22-04-2016 PP4_RS07850 2d0f25b8fb2266493f3d119a1472604b 227 Gene3D G3DSA:1.10.10.10 124 217 4.1E-28 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS07850 2d0f25b8fb2266493f3d119a1472604b 227 SMART SM00448 1 112 1.6E-36 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS07850 2d0f25b8fb2266493f3d119a1472604b 227 Gene3D G3DSA:3.40.50.2300 1 120 2.5E-36 T 22-04-2016 PP4_RS07850 2d0f25b8fb2266493f3d119a1472604b 227 PANTHER PTHR26402:SF399 1 221 2.7E-89 T 22-04-2016 PP4_RS25755 e80796958320f95785cdcbab1d8e8991 607 Pfam PF00679 Elongation factor G C-terminus 397 477 1.4E-21 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain PP4_RS25755 e80796958320f95785cdcbab1d8e8991 607 Pfam PF03144 Elongation factor Tu domain 2 219 289 2.3E-9 T 22-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 PP4_RS25755 e80796958320f95785cdcbab1d8e8991 607 SUPERFAMILY SSF50447 151 299 3.31E-31 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain PP4_RS25755 e80796958320f95785cdcbab1d8e8991 607 SUPERFAMILY SSF52540 3 207 1.81E-57 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25755 e80796958320f95785cdcbab1d8e8991 607 Gene3D G3DSA:3.30.70.870 304 399 1.8E-36 T 22-04-2016 PP4_RS25755 e80796958320f95785cdcbab1d8e8991 607 PANTHER PTHR23115 3 602 9.9E-294 T 22-04-2016 PP4_RS25755 e80796958320f95785cdcbab1d8e8991 607 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 5 599 3.0E-285 T 22-04-2016 IPR006298 GTP-binding protein TypA GO:0005525 PP4_RS25755 e80796958320f95785cdcbab1d8e8991 607 Pfam PF00009 Elongation factor Tu GTP binding domain 4 195 2.1E-56 T 22-04-2016 PP4_RS25755 e80796958320f95785cdcbab1d8e8991 607 Gene3D G3DSA:3.40.50.300 3 205 6.4E-66 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25755 e80796958320f95785cdcbab1d8e8991 607 PRINTS PR00315 GTP-binding elongation factor signature 123 132 3.1E-13 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS25755 e80796958320f95785cdcbab1d8e8991 607 PRINTS PR00315 GTP-binding elongation factor signature 71 81 3.1E-13 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS25755 e80796958320f95785cdcbab1d8e8991 607 PRINTS PR00315 GTP-binding elongation factor signature 51 59 3.1E-13 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS25755 e80796958320f95785cdcbab1d8e8991 607 PRINTS PR00315 GTP-binding elongation factor signature 7 20 3.1E-13 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS25755 e80796958320f95785cdcbab1d8e8991 607 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 5 139 4.5E-24 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 PP4_RS25755 e80796958320f95785cdcbab1d8e8991 607 PANTHER PTHR23115:SF14 3 602 9.9E-294 T 22-04-2016 IPR006298 GTP-binding protein TypA GO:0005525 PP4_RS25755 e80796958320f95785cdcbab1d8e8991 607 Gene3D G3DSA:2.40.30.10 206 303 1.7E-24 T 22-04-2016 PP4_RS25755 e80796958320f95785cdcbab1d8e8991 607 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 44 59 - T 22-04-2016 IPR031157 Tr-type G domain, conserved site PP4_RS25755 e80796958320f95785cdcbab1d8e8991 607 Gene3D G3DSA:2.40.50.250 483 577 4.9E-40 T 22-04-2016 PP4_RS25755 e80796958320f95785cdcbab1d8e8991 607 Gene3D G3DSA:3.30.70.240 400 478 3.5E-30 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain PP4_RS25755 e80796958320f95785cdcbab1d8e8991 607 SUPERFAMILY SSF54980 398 513 3.17E-26 T 22-04-2016 IPR009022 Elongation factor G, III-V domain PP4_RS25755 e80796958320f95785cdcbab1d8e8991 607 SUPERFAMILY SSF54980 302 387 3.96E-15 T 22-04-2016 IPR009022 Elongation factor G, III-V domain PP4_RS09135 6712b1cc64f44dbd93fff23871f1f1e0 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 1.4E-11 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS09135 6712b1cc64f44dbd93fff23871f1f1e0 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 87 98 1.4E-11 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS09135 6712b1cc64f44dbd93fff23871f1f1e0 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 1.4E-11 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS09135 6712b1cc64f44dbd93fff23871f1f1e0 255 PANTHER PTHR24322:SF409 161 192 3.7E-80 T 22-04-2016 PP4_RS09135 6712b1cc64f44dbd93fff23871f1f1e0 255 PANTHER PTHR24322:SF409 16 145 3.7E-80 T 22-04-2016 PP4_RS09135 6712b1cc64f44dbd93fff23871f1f1e0 255 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 18 253 1.2E-67 T 22-04-2016 PP4_RS09135 6712b1cc64f44dbd93fff23871f1f1e0 255 Gene3D G3DSA:3.40.50.720 5 254 4.1E-86 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS09135 6712b1cc64f44dbd93fff23871f1f1e0 255 PANTHER PTHR24322 161 192 3.7E-80 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS09135 6712b1cc64f44dbd93fff23871f1f1e0 255 PANTHER PTHR24322 16 145 3.7E-80 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS09135 6712b1cc64f44dbd93fff23871f1f1e0 255 SUPERFAMILY SSF51735 10 253 6.62E-84 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS09135 6712b1cc64f44dbd93fff23871f1f1e0 255 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PP4_RS09135 6712b1cc64f44dbd93fff23871f1f1e0 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 87 98 3.0E-40 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS09135 6712b1cc64f44dbd93fff23871f1f1e0 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 217 237 3.0E-40 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS09135 6712b1cc64f44dbd93fff23871f1f1e0 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 3.0E-40 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS09135 6712b1cc64f44dbd93fff23871f1f1e0 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 13 30 3.0E-40 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS09135 6712b1cc64f44dbd93fff23871f1f1e0 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 3.0E-40 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS09135 6712b1cc64f44dbd93fff23871f1f1e0 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 3.0E-40 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS09150 f771837d98b1258a1eae8b54ff650313 236 SMART SM00855 3 179 5.5E-10 T 22-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 PP4_RS09150 f771837d98b1258a1eae8b54ff650313 236 PANTHER PTHR20935 163 232 1.5E-15 T 22-04-2016 PP4_RS09150 f771837d98b1258a1eae8b54ff650313 236 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 115 220 9.5E-11 T 22-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 PP4_RS09150 f771837d98b1258a1eae8b54ff650313 236 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 4 87 6.5E-10 T 22-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 PP4_RS09150 f771837d98b1258a1eae8b54ff650313 236 Gene3D G3DSA:3.40.50.1240 3 225 1.1E-31 T 22-04-2016 IPR029033 Histidine phosphatase superfamily PP4_RS09150 f771837d98b1258a1eae8b54ff650313 236 SUPERFAMILY SSF53254 3 232 4.98E-36 T 22-04-2016 IPR029033 Histidine phosphatase superfamily PP4_RS09150 f771837d98b1258a1eae8b54ff650313 236 PANTHER PTHR20935 4 122 1.5E-15 T 22-04-2016 PP4_RS09150 f771837d98b1258a1eae8b54ff650313 236 PANTHER PTHR20935:SF1 163 232 1.5E-15 T 22-04-2016 PP4_RS09150 f771837d98b1258a1eae8b54ff650313 236 PANTHER PTHR20935:SF1 4 122 1.5E-15 T 22-04-2016 PP4_RS08155 1bba2f0d0b833c96a975fd67fab56aee 884 SUPERFAMILY SSF47384 646 720 1.2E-16 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS08155 1bba2f0d0b833c96a975fd67fab56aee 884 SMART SM00388 651 719 2.9E-18 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS08155 1bba2f0d0b833c96a975fd67fab56aee 884 PANTHER PTHR24423:SF562 583 878 4.1E-193 T 22-04-2016 PP4_RS08155 1bba2f0d0b833c96a975fd67fab56aee 884 PANTHER PTHR24423:SF562 18 194 4.1E-193 T 22-04-2016 PP4_RS08155 1bba2f0d0b833c96a975fd67fab56aee 884 SUPERFAMILY SSF55781 577 642 2.62E-6 T 22-04-2016 IPR029016 GAF domain-like PP4_RS08155 1bba2f0d0b833c96a975fd67fab56aee 884 Gene3D G3DSA:3.30.565.10 721 880 1.4E-34 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS08155 1bba2f0d0b833c96a975fd67fab56aee 884 Pfam PF02702 Osmosensitive K+ channel His kinase sensor domain 19 227 1.6E-91 T 22-04-2016 IPR003852 Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal GO:0000155|GO:0000160|GO:0004673|GO:0016020 PP4_RS08155 1bba2f0d0b833c96a975fd67fab56aee 884 PRINTS PR00344 Bacterial sensor protein C-terminal signature 800 814 1.1E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS08155 1bba2f0d0b833c96a975fd67fab56aee 884 PRINTS PR00344 Bacterial sensor protein C-terminal signature 818 828 1.1E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS08155 1bba2f0d0b833c96a975fd67fab56aee 884 PRINTS PR00344 Bacterial sensor protein C-terminal signature 859 872 1.1E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS08155 1bba2f0d0b833c96a975fd67fab56aee 884 PRINTS PR00344 Bacterial sensor protein C-terminal signature 834 852 1.1E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS08155 1bba2f0d0b833c96a975fd67fab56aee 884 Pfam PF00512 His Kinase A (phospho-acceptor) domain 652 719 2.9E-15 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS08155 1bba2f0d0b833c96a975fd67fab56aee 884 SMART SM00387 763 875 5.9E-31 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS08155 1bba2f0d0b833c96a975fd67fab56aee 884 Pfam PF13493 Domain of unknown function (DUF4118) 390 495 4.5E-25 T 22-04-2016 IPR025201 Sensor protein KdpD, transmembrane domain PP4_RS08155 1bba2f0d0b833c96a975fd67fab56aee 884 Gene3D G3DSA:3.40.50.300 18 225 1.8E-94 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS08155 1bba2f0d0b833c96a975fd67fab56aee 884 Gene3D G3DSA:1.20.120.620 387 489 1.5E-26 T 22-04-2016 PP4_RS08155 1bba2f0d0b833c96a975fd67fab56aee 884 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 768 874 1.4E-19 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS08155 1bba2f0d0b833c96a975fd67fab56aee 884 SUPERFAMILY SSF52402 248 361 1.67E-12 T 22-04-2016 PP4_RS08155 1bba2f0d0b833c96a975fd67fab56aee 884 SUPERFAMILY SSF55874 709 877 1.44E-36 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS08155 1bba2f0d0b833c96a975fd67fab56aee 884 Gene3D G3DSA:3.40.50.620 244 361 3.1E-14 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS08155 1bba2f0d0b833c96a975fd67fab56aee 884 Gene3D G3DSA:1.10.287.130 647 715 4.2E-19 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS08155 1bba2f0d0b833c96a975fd67fab56aee 884 Pfam PF00582 Universal stress protein family 248 361 6.8E-11 T 22-04-2016 IPR006016 UspA GO:0006950 PP4_RS08155 1bba2f0d0b833c96a975fd67fab56aee 884 PANTHER PTHR24423 583 878 4.1E-193 T 22-04-2016 PP4_RS08155 1bba2f0d0b833c96a975fd67fab56aee 884 PANTHER PTHR24423 18 194 4.1E-193 T 22-04-2016 PP4_RS00905 d76e02dfde0a6f31d7e39b47295110fa 291 Pfam PF13437 HlyD family secretion protein 155 237 4.4E-11 T 22-04-2016 PP4_RS00905 d76e02dfde0a6f31d7e39b47295110fa 291 PANTHER PTHR30367 14 289 1.1E-91 T 22-04-2016 PP4_RS00905 d76e02dfde0a6f31d7e39b47295110fa 291 Pfam PF13533 Biotin-lipoyl like 47 94 1.0E-18 T 22-04-2016 PP4_RS00905 d76e02dfde0a6f31d7e39b47295110fa 291 Gene3D G3DSA:2.40.50.100 153 186 1.5E-16 T 22-04-2016 PP4_RS00905 d76e02dfde0a6f31d7e39b47295110fa 291 Gene3D G3DSA:2.40.50.100 47 80 1.5E-16 T 22-04-2016 PP4_RS00905 d76e02dfde0a6f31d7e39b47295110fa 291 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 47 234 1.1E-33 T 22-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 PP4_RS00905 d76e02dfde0a6f31d7e39b47295110fa 291 PANTHER PTHR30367:SF5 14 289 1.1E-91 T 22-04-2016 PP4_RS00905 d76e02dfde0a6f31d7e39b47295110fa 291 SUPERFAMILY SSF111369 46 191 3.01E-21 T 22-04-2016 PP4_RS13230 79b47ee74cdb0058a4b65b56d0907d45 189 PANTHER PTHR33303:SF4 20 189 6.7E-58 T 22-04-2016 PP4_RS13230 79b47ee74cdb0058a4b65b56d0907d45 189 PANTHER PTHR33303 20 189 6.7E-58 T 22-04-2016 PP4_RS13230 79b47ee74cdb0058a4b65b56d0907d45 189 Pfam PF00583 Acetyltransferase (GNAT) family 106 171 3.6E-7 T 22-04-2016 IPR000182 GNAT domain GO:0008080 PP4_RS13230 79b47ee74cdb0058a4b65b56d0907d45 189 SUPERFAMILY SSF55729 35 175 1.36E-18 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS13230 79b47ee74cdb0058a4b65b56d0907d45 189 Gene3D G3DSA:3.40.630.30 33 173 2.7E-17 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS14600 aa02f66ace68cddd7046684e8b78cfc4 691 SUPERFAMILY SSF69255 384 471 1.41E-30 T 22-04-2016 PP4_RS14600 aa02f66ace68cddd7046684e8b78cfc4 691 SUPERFAMILY SSF69349 462 666 1.41E-44 T 22-04-2016 PP4_RS14600 aa02f66ace68cddd7046684e8b78cfc4 691 Gene3D G3DSA:3.55.50.10 97 184 5.3E-28 T 22-04-2016 PP4_RS14600 aa02f66ace68cddd7046684e8b78cfc4 691 PANTHER PTHR32305:SF11 5 655 1.4E-204 T 22-04-2016 PP4_RS14600 aa02f66ace68cddd7046684e8b78cfc4 691 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 12 540 1.6E-168 T 22-04-2016 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset PP4_RS14600 aa02f66ace68cddd7046684e8b78cfc4 691 SUPERFAMILY SSF69279 16 183 4.68E-50 T 22-04-2016 PP4_RS14600 aa02f66ace68cddd7046684e8b78cfc4 691 Gene3D G3DSA:2.40.50.230 390 471 1.5E-36 T 22-04-2016 IPR006531 Gp5 N-terminal PP4_RS14600 aa02f66ace68cddd7046684e8b78cfc4 691 PANTHER PTHR32305 5 655 1.4E-204 T 22-04-2016 PP4_RS14600 aa02f66ace68cddd7046684e8b78cfc4 691 SUPERFAMILY SSF69279 214 385 1.21E-28 T 22-04-2016 PP4_RS14600 aa02f66ace68cddd7046684e8b78cfc4 691 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 21 523 2.5E-124 T 22-04-2016 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein PP4_RS14600 aa02f66ace68cddd7046684e8b78cfc4 691 Pfam PF05954 Phage late control gene D protein (GPD) 29 347 2.6E-66 T 22-04-2016 PP4_RS01740 559ee14e66f32ea3148f4a568745ce5b 430 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 91 111 3.7E-27 T 22-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 PP4_RS01740 559ee14e66f32ea3148f4a568745ce5b 430 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 112 132 3.7E-27 T 22-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 PP4_RS01740 559ee14e66f32ea3148f4a568745ce5b 430 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 40 65 3.7E-27 T 22-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 PP4_RS01740 559ee14e66f32ea3148f4a568745ce5b 430 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 152 178 3.7E-27 T 22-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 PP4_RS01740 559ee14e66f32ea3148f4a568745ce5b 430 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 189 211 3.7E-27 T 22-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 PP4_RS01740 559ee14e66f32ea3148f4a568745ce5b 430 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 70 85 3.7E-27 T 22-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 PP4_RS01740 559ee14e66f32ea3148f4a568745ce5b 430 PANTHER PTHR21266 26 412 1.3E-112 T 22-04-2016 PP4_RS01740 559ee14e66f32ea3148f4a568745ce5b 430 Pfam PF00355 Rieske [2Fe-2S] domain 56 131 8.4E-16 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 PP4_RS01740 559ee14e66f32ea3148f4a568745ce5b 430 SUPERFAMILY SSF50022 23 167 5.76E-45 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 PP4_RS01740 559ee14e66f32ea3148f4a568745ce5b 430 SUPERFAMILY SSF55961 171 419 3.14E-54 T 22-04-2016 PP4_RS01740 559ee14e66f32ea3148f4a568745ce5b 430 PANTHER PTHR21266:SF2 26 412 1.3E-112 T 22-04-2016 PP4_RS01740 559ee14e66f32ea3148f4a568745ce5b 430 Gene3D G3DSA:3.90.380.10 159 410 1.6E-20 T 22-04-2016 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 PP4_RS01740 559ee14e66f32ea3148f4a568745ce5b 430 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 189 412 5.2E-46 T 22-04-2016 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 PP4_RS01740 559ee14e66f32ea3148f4a568745ce5b 430 Gene3D G3DSA:2.102.10.10 55 158 1.4E-24 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 PP4_RS05970 ad8267b737b127c3b28b482c04dc3476 502 Pfam PF06097 Bacterial protein of unknown function (DUF945) 1 484 3.8E-106 T 22-04-2016 IPR010352 Protein of unknown function DUF945 PP4_RS10550 293bad8cfbc61b9f7f6fe26022ebaec3 298 Pfam PF03466 LysR substrate binding domain 93 291 4.5E-28 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS10550 293bad8cfbc61b9f7f6fe26022ebaec3 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 61 1.7E-16 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS10550 293bad8cfbc61b9f7f6fe26022ebaec3 298 Gene3D G3DSA:1.10.10.10 1 84 1.6E-26 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS10550 293bad8cfbc61b9f7f6fe26022ebaec3 298 SUPERFAMILY SSF53850 88 290 2.29E-43 T 22-04-2016 PP4_RS10550 293bad8cfbc61b9f7f6fe26022ebaec3 298 PANTHER PTHR30118:SF8 1 292 1.8E-115 T 22-04-2016 PP4_RS10550 293bad8cfbc61b9f7f6fe26022ebaec3 298 Gene3D G3DSA:3.40.190.10 169 263 3.3E-29 T 22-04-2016 PP4_RS10550 293bad8cfbc61b9f7f6fe26022ebaec3 298 Gene3D G3DSA:3.40.190.10 268 293 1.3E-25 T 22-04-2016 PP4_RS10550 293bad8cfbc61b9f7f6fe26022ebaec3 298 Gene3D G3DSA:3.40.190.10 88 168 1.3E-25 T 22-04-2016 PP4_RS10550 293bad8cfbc61b9f7f6fe26022ebaec3 298 PANTHER PTHR30118 1 292 1.8E-115 T 22-04-2016 PP4_RS10550 293bad8cfbc61b9f7f6fe26022ebaec3 298 SUPERFAMILY SSF46785 2 85 8.16E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS10550 293bad8cfbc61b9f7f6fe26022ebaec3 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 1.7E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS10550 293bad8cfbc61b9f7f6fe26022ebaec3 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 1.7E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS10550 293bad8cfbc61b9f7f6fe26022ebaec3 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 1.7E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS05430 8f79710c11ee3bad2d19cd42bec4c719 381 Pfam PF00144 Beta-lactamase 17 368 5.0E-78 T 22-04-2016 IPR001466 Beta-lactamase-related PP4_RS05430 8f79710c11ee3bad2d19cd42bec4c719 381 PANTHER PTHR10566 91 210 5.6E-40 T 22-04-2016 PP4_RS05430 8f79710c11ee3bad2d19cd42bec4c719 381 SUPERFAMILY SSF56601 11 375 9.05E-78 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS05430 8f79710c11ee3bad2d19cd42bec4c719 381 PANTHER PTHR10566:SF94 91 210 5.6E-40 T 22-04-2016 PP4_RS05430 8f79710c11ee3bad2d19cd42bec4c719 381 Gene3D G3DSA:3.40.710.10 8 377 8.8E-86 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS26880 32b9a35d3c8c528f93cf60e95f9a14fe 162 ProSitePatterns PS00519 AsnC-type HTH domain signature. 29 55 - T 22-04-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PP4_RS26880 32b9a35d3c8c528f93cf60e95f9a14fe 162 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 38 57 8.0E-21 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS26880 32b9a35d3c8c528f93cf60e95f9a14fe 162 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 27 38 8.0E-21 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS26880 32b9a35d3c8c528f93cf60e95f9a14fe 162 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 11 27 8.0E-21 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS26880 32b9a35d3c8c528f93cf60e95f9a14fe 162 Gene3D G3DSA:1.10.10.10 12 63 1.7E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS26880 32b9a35d3c8c528f93cf60e95f9a14fe 162 Pfam PF13404 AsnC-type helix-turn-helix domain 11 52 6.7E-20 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS26880 32b9a35d3c8c528f93cf60e95f9a14fe 162 Pfam PF01037 Lrp/AsnC ligand binding domain 77 151 1.4E-21 T 22-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PP4_RS26880 32b9a35d3c8c528f93cf60e95f9a14fe 162 SUPERFAMILY SSF54909 73 160 5.23E-21 T 22-04-2016 IPR011008 Dimeric alpha-beta barrel PP4_RS26880 32b9a35d3c8c528f93cf60e95f9a14fe 162 Gene3D G3DSA:3.30.70.920 64 160 2.2E-31 T 22-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PP4_RS26880 32b9a35d3c8c528f93cf60e95f9a14fe 162 PANTHER PTHR30154:SF0 3 160 1.5E-92 T 22-04-2016 PP4_RS26880 32b9a35d3c8c528f93cf60e95f9a14fe 162 PANTHER PTHR30154 3 160 1.5E-92 T 22-04-2016 PP4_RS26880 32b9a35d3c8c528f93cf60e95f9a14fe 162 SUPERFAMILY SSF46785 10 69 5.91E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS26880 32b9a35d3c8c528f93cf60e95f9a14fe 162 SMART SM00344 11 120 2.5E-48 T 22-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 PP4_RS26370 a93d6f90fdc68d80acbe2139e9947d62 261 PIRSF PIRSF002854 1 261 2.6E-103 T 22-04-2016 IPR004872 Lipoprotein NlpA family PP4_RS26370 a93d6f90fdc68d80acbe2139e9947d62 261 Pfam PF03180 NLPA lipoprotein 26 261 2.9E-100 T 22-04-2016 IPR004872 Lipoprotein NlpA family PP4_RS26370 a93d6f90fdc68d80acbe2139e9947d62 261 Gene3D G3DSA:3.40.190.10 24 152 9.9E-52 T 22-04-2016 PP4_RS26370 a93d6f90fdc68d80acbe2139e9947d62 261 PANTHER PTHR30429:SF0 6 261 7.2E-141 T 22-04-2016 PP4_RS26370 a93d6f90fdc68d80acbe2139e9947d62 261 SUPERFAMILY SSF53850 25 261 1.04E-84 T 22-04-2016 PP4_RS26370 a93d6f90fdc68d80acbe2139e9947d62 261 PANTHER PTHR30429 6 261 7.2E-141 T 22-04-2016 IPR004872 Lipoprotein NlpA family PP4_RS13155 ca139e1122d42960e9aa01f4cf6f7ce1 252 SUPERFAMILY SSF47240 2 246 6.16E-76 T 22-04-2016 IPR009078 Ferritin-like superfamily PP4_RS13155 ca139e1122d42960e9aa01f4cf6f7ce1 252 Pfam PF05138 Phenylacetic acid catabolic protein 3 252 3.6E-87 T 22-04-2016 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C GO:0010124 UniPathway: UPA00930 PP4_RS13155 ca139e1122d42960e9aa01f4cf6f7ce1 252 PANTHER PTHR30458 3 252 4.3E-91 T 22-04-2016 PP4_RS13155 ca139e1122d42960e9aa01f4cf6f7ce1 252 PANTHER PTHR30458:SF1 3 252 4.3E-91 T 22-04-2016 PP4_RS13155 ca139e1122d42960e9aa01f4cf6f7ce1 252 TIGRFAM TIGR02158 PA_CoA_Oxy3: phenylacetate-CoA oxygenase, PaaI subunit 13 252 2.1E-80 T 22-04-2016 IPR011882 1,2-phenylacetyl-CoA epoxidase, subunit C GO:0010124 UniPathway: UPA00930 PP4_RS13155 ca139e1122d42960e9aa01f4cf6f7ce1 252 Gene3D G3DSA:1.20.1260.10 3 252 5.5E-87 T 22-04-2016 IPR012347 Ferritin-related PP4_RS13155 ca139e1122d42960e9aa01f4cf6f7ce1 252 PIRSF PIRSF037834 1 252 2.1E-87 T 22-04-2016 IPR011882 1,2-phenylacetyl-CoA epoxidase, subunit C GO:0010124 UniPathway: UPA00930 PP4_RS11655 7eeb0789fd47f81c7cc941ec136c4efa 293 SUPERFAMILY SSF53850 101 289 4.52E-25 T 22-04-2016 PP4_RS11655 7eeb0789fd47f81c7cc941ec136c4efa 293 SUPERFAMILY SSF46785 6 111 1.44E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS11655 7eeb0789fd47f81c7cc941ec136c4efa 293 Pfam PF03466 LysR substrate binding domain 100 285 4.1E-26 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS11655 7eeb0789fd47f81c7cc941ec136c4efa 293 Gene3D G3DSA:3.40.190.10 98 193 1.5E-14 T 22-04-2016 PP4_RS11655 7eeb0789fd47f81c7cc941ec136c4efa 293 Gene3D G3DSA:3.40.190.10 194 246 2.6E-9 T 22-04-2016 PP4_RS11655 7eeb0789fd47f81c7cc941ec136c4efa 293 Gene3D G3DSA:1.10.10.10 12 93 4.1E-26 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS11655 7eeb0789fd47f81c7cc941ec136c4efa 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 40 7.2E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS11655 7eeb0789fd47f81c7cc941ec136c4efa 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 50 7.2E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS11655 7eeb0789fd47f81c7cc941ec136c4efa 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 50 61 7.2E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS11655 7eeb0789fd47f81c7cc941ec136c4efa 293 PANTHER PTHR30579 7 289 1.2E-102 T 22-04-2016 PP4_RS11655 7eeb0789fd47f81c7cc941ec136c4efa 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 14 73 4.0E-19 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS11655 7eeb0789fd47f81c7cc941ec136c4efa 293 PANTHER PTHR30579:SF0 7 289 1.2E-102 T 22-04-2016 PP4_RS12445 c384fa506a8bb031b655990ca402a099 371 Pfam PF03747 ADP-ribosylglycohydrolase 70 334 1.2E-59 T 22-04-2016 IPR005502 ADP-ribosylation/Crystallin J1 PP4_RS12445 c384fa506a8bb031b655990ca402a099 371 PANTHER PTHR16222:SF12 65 357 4.5E-54 T 22-04-2016 PP4_RS12445 c384fa506a8bb031b655990ca402a099 371 SUPERFAMILY SSF101478 65 357 5.89E-76 T 22-04-2016 IPR005502 ADP-ribosylation/Crystallin J1 PP4_RS12445 c384fa506a8bb031b655990ca402a099 371 PANTHER PTHR16222 65 357 4.5E-54 T 22-04-2016 PP4_RS20760 c8f1bc1f1b9bd955aff0b3a672588043 329 PANTHER PTHR10996 1 323 4.4E-159 T 22-04-2016 PP4_RS20760 c8f1bc1f1b9bd955aff0b3a672588043 329 PANTHER PTHR10996:SF161 1 323 4.4E-159 T 22-04-2016 PP4_RS20760 c8f1bc1f1b9bd955aff0b3a672588043 329 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 147 174 - T 22-04-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 PP4_RS20760 c8f1bc1f1b9bd955aff0b3a672588043 329 Gene3D G3DSA:3.40.50.720 119 297 1.1E-62 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS20760 c8f1bc1f1b9bd955aff0b3a672588043 329 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 223 239 - T 22-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site PP4_RS20760 c8f1bc1f1b9bd955aff0b3a672588043 329 SUPERFAMILY SSF51735 102 298 5.83E-60 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS20760 c8f1bc1f1b9bd955aff0b3a672588043 329 SUPERFAMILY SSF52283 2 134 6.38E-38 T 22-04-2016 PP4_RS20760 c8f1bc1f1b9bd955aff0b3a672588043 329 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 5 327 2.3E-30 T 22-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 PP4_RS20760 c8f1bc1f1b9bd955aff0b3a672588043 329 Gene3D G3DSA:3.40.50.720 12 118 4.5E-31 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS20760 c8f1bc1f1b9bd955aff0b3a672588043 329 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 194 216 - T 22-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site PP4_RS20760 c8f1bc1f1b9bd955aff0b3a672588043 329 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 297 3.3E-59 T 22-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 PP4_RS13470 d82ec2cedf082280274320288d8bb727 347 Gene3D G3DSA:3.40.50.720 122 297 4.5E-59 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS13470 d82ec2cedf082280274320288d8bb727 347 SUPERFAMILY SSF51735 111 297 3.11E-51 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS13470 d82ec2cedf082280274320288d8bb727 347 SUPERFAMILY SSF52283 15 141 5.67E-21 T 22-04-2016 PP4_RS13470 d82ec2cedf082280274320288d8bb727 347 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 206 228 - T 22-04-2016 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site PP4_RS13470 d82ec2cedf082280274320288d8bb727 347 Gene3D G3DSA:3.40.50.720 14 121 8.6E-25 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS13470 d82ec2cedf082280274320288d8bb727 347 PANTHER PTHR10996:SF20 15 340 3.1E-106 T 22-04-2016 PP4_RS13470 d82ec2cedf082280274320288d8bb727 347 PANTHER PTHR10996 15 340 3.1E-106 T 22-04-2016 PP4_RS13470 d82ec2cedf082280274320288d8bb727 347 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 120 296 4.4E-55 T 22-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 PP4_RS13470 d82ec2cedf082280274320288d8bb727 347 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 28 328 3.0E-22 T 22-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 PP4_RS16515 bdee0302b055a78c2c61a29df77aad53 572 PANTHER PTHR30443 1 565 0.0 T 22-04-2016 PP4_RS16515 bdee0302b055a78c2c61a29df77aad53 572 Gene3D G3DSA:3.40.720.10 229 521 2.8E-13 T 22-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 PP4_RS16515 bdee0302b055a78c2c61a29df77aad53 572 SUPERFAMILY SSF53649 225 522 1.66E-31 T 22-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 PP4_RS16515 bdee0302b055a78c2c61a29df77aad53 572 Pfam PF00884 Sulfatase 227 517 7.0E-43 T 22-04-2016 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 PP4_RS16515 bdee0302b055a78c2c61a29df77aad53 572 PANTHER PTHR30443:SF2 1 565 0.0 T 22-04-2016 PP4_RS16515 bdee0302b055a78c2c61a29df77aad53 572 Pfam PF08019 Domain of unknown function (DUF1705) 50 195 1.1E-5 T 22-04-2016 IPR012549 Domain of unknown function DUF1705 GO:0016021 PP4_RS23410 98b422449cc1fe2cabacd7d6636c9e5a 943 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 27 647 2.3E-237 T 22-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS23410 98b422449cc1fe2cabacd7d6636c9e5a 943 SUPERFAMILY SSF47323 658 934 8.14E-79 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS23410 98b422449cc1fe2cabacd7d6636c9e5a 943 Gene3D G3DSA:3.90.740.10 203 387 4.3E-53 T 22-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 PP4_RS23410 98b422449cc1fe2cabacd7d6636c9e5a 943 SUPERFAMILY SSF52374 3 199 5.14E-131 T 22-04-2016 PP4_RS23410 98b422449cc1fe2cabacd7d6636c9e5a 943 SUPERFAMILY SSF52374 401 653 5.14E-131 T 22-04-2016 PP4_RS23410 98b422449cc1fe2cabacd7d6636c9e5a 943 SUPERFAMILY SSF50677 201 401 2.75E-52 T 22-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 PP4_RS23410 98b422449cc1fe2cabacd7d6636c9e5a 943 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 15 849 2.5E-277 T 22-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 PP4_RS23410 98b422449cc1fe2cabacd7d6636c9e5a 943 PANTHER PTHR11946:SF11 6 256 0.0 T 22-04-2016 PP4_RS23410 98b422449cc1fe2cabacd7d6636c9e5a 943 PANTHER PTHR11946:SF11 279 877 0.0 T 22-04-2016 PP4_RS23410 98b422449cc1fe2cabacd7d6636c9e5a 943 Gene3D G3DSA:3.40.50.620 404 642 1.8E-132 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS23410 98b422449cc1fe2cabacd7d6636c9e5a 943 Gene3D G3DSA:3.40.50.620 14 197 1.8E-132 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS23410 98b422449cc1fe2cabacd7d6636c9e5a 943 PANTHER PTHR11946 6 256 0.0 T 22-04-2016 PP4_RS23410 98b422449cc1fe2cabacd7d6636c9e5a 943 PANTHER PTHR11946 279 877 0.0 T 22-04-2016 PP4_RS23410 98b422449cc1fe2cabacd7d6636c9e5a 943 Pfam PF06827 Zinc finger found in FPG and IleRS 905 931 2.0E-6 T 22-04-2016 IPR010663 Zinc finger, FPG/IleRS-type PP4_RS23410 98b422449cc1fe2cabacd7d6636c9e5a 943 Pfam PF08264 Anticodon-binding domain of tRNA 691 847 5.1E-27 T 22-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 PP4_RS23410 98b422449cc1fe2cabacd7d6636c9e5a 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 51 62 5.2E-31 T 22-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 PP4_RS23410 98b422449cc1fe2cabacd7d6636c9e5a 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 235 258 5.2E-31 T 22-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 PP4_RS23410 98b422449cc1fe2cabacd7d6636c9e5a 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 399 414 5.2E-31 T 22-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 PP4_RS23410 98b422449cc1fe2cabacd7d6636c9e5a 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 567 576 5.2E-31 T 22-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 PP4_RS23410 98b422449cc1fe2cabacd7d6636c9e5a 943 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 529 542 5.2E-31 T 22-04-2016 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5|Reactome: REACT_71 PP4_RS23410 98b422449cc1fe2cabacd7d6636c9e5a 943 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 58 69 - T 22-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS23410 98b422449cc1fe2cabacd7d6636c9e5a 943 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 2 934 21.196 T 22-04-2016 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5 PP4_RS23410 98b422449cc1fe2cabacd7d6636c9e5a 943 Gene3D G3DSA:1.10.730.10 648 795 4.4E-43 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS25385 0ee18e20d3d0f5bf640d88696aa0bba3 383 Pfam PF06725 3D domain 298 369 1.8E-23 T 22-04-2016 IPR010611 3D domain GO:0004553|GO:0009254|GO:0019867 PP4_RS25385 0ee18e20d3d0f5bf640d88696aa0bba3 383 PANTHER PTHR30124 1 378 3.8E-123 T 22-04-2016 PP4_RS25385 0ee18e20d3d0f5bf640d88696aa0bba3 383 PANTHER PTHR30124:SF0 1 378 3.8E-123 T 22-04-2016 PP4_RS25385 0ee18e20d3d0f5bf640d88696aa0bba3 383 Pfam PF03562 MltA specific insert domain 49 275 5.9E-75 T 22-04-2016 IPR005300 Lytic transglycosylase MltA GO:0004553 PP4_RS25385 0ee18e20d3d0f5bf640d88696aa0bba3 383 SUPERFAMILY SSF50685 35 374 3.17E-120 T 22-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain PP4_RS25385 0ee18e20d3d0f5bf640d88696aa0bba3 383 Gene3D G3DSA:2.40.40.10 187 374 1.8E-55 T 22-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain PP4_RS25385 0ee18e20d3d0f5bf640d88696aa0bba3 383 Gene3D G3DSA:2.40.40.10 34 184 7.6E-26 T 22-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain PP4_RS25385 0ee18e20d3d0f5bf640d88696aa0bba3 383 SMART SM00925 121 276 2.5E-85 T 22-04-2016 IPR005300 Lytic transglycosylase MltA GO:0004553 PP4_RS25385 0ee18e20d3d0f5bf640d88696aa0bba3 383 PIRSF PIRSF019422 1 378 5.2E-117 T 22-04-2016 IPR026044 Membrane-bound lytic murein transglycosylase A PP4_RS17120 507b59b1fc7deb40f5e12356f3778c3c 282 PANTHER PTHR21089 63 276 1.4E-61 T 22-04-2016 PP4_RS17120 507b59b1fc7deb40f5e12356f3778c3c 282 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 5 280 27.309 T 22-04-2016 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 PP4_RS17120 507b59b1fc7deb40f5e12356f3778c3c 282 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 10 97 3.2E-20 T 22-04-2016 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 PP4_RS17120 507b59b1fc7deb40f5e12356f3778c3c 282 Gene3D G3DSA:3.40.50.720 115 278 1.8E-45 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS17120 507b59b1fc7deb40f5e12356f3778c3c 282 SUPERFAMILY SSF51735 110 278 3.15E-38 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS17120 507b59b1fc7deb40f5e12356f3778c3c 282 Gene3D G3DSA:3.40.192.10 3 114 2.8E-32 T 22-04-2016 PP4_RS17120 507b59b1fc7deb40f5e12356f3778c3c 282 SUPERFAMILY SSF53223 2 109 9.78E-26 T 22-04-2016 PP4_RS24705 9064de4fb5a20bdd378a3ed99174e52b 364 TIGRFAM TIGR00312 cbiD: cobalamin biosynthesis protein CbiD 19 321 1.5E-61 T 22-04-2016 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.195|MetaCyc: PWY-2201|MetaCyc: PWY-7377|UniPathway: UPA00148 PP4_RS24705 9064de4fb5a20bdd378a3ed99174e52b 364 Gene3D G3DSA:3.30.2110.10 14 186 1.1E-55 T 22-04-2016 PP4_RS24705 9064de4fb5a20bdd378a3ed99174e52b 364 SUPERFAMILY SSF111342 6 288 6.93E-82 T 22-04-2016 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.195|MetaCyc: PWY-2201|MetaCyc: PWY-7377|UniPathway: UPA00148 PP4_RS24705 9064de4fb5a20bdd378a3ed99174e52b 364 PANTHER PTHR35863:SF1 1 360 9.0E-115 T 22-04-2016 PP4_RS24705 9064de4fb5a20bdd378a3ed99174e52b 364 Pfam PF01888 CbiD 12 271 1.9E-88 T 22-04-2016 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.195|MetaCyc: PWY-2201|MetaCyc: PWY-7377|UniPathway: UPA00148 PP4_RS24705 9064de4fb5a20bdd378a3ed99174e52b 364 Hamap MF_00787 Cobalt-precorrin-5B C(1)-methyltransferase [cbiD]. 12 361 27.961 T 22-04-2016 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.195|MetaCyc: PWY-2201|MetaCyc: PWY-7377|UniPathway: UPA00148 PP4_RS24705 9064de4fb5a20bdd378a3ed99174e52b 364 PANTHER PTHR35863 1 360 9.0E-115 T 22-04-2016 PP4_RS24705 9064de4fb5a20bdd378a3ed99174e52b 364 PIRSF PIRSF026782 9 364 3.4E-119 T 22-04-2016 IPR002748 Cobalt-precorrin-5B C(1)-methyltransferase CbiD GO:0008168|GO:0009236 KEGG: 00670+2.1.1.19|KEGG: 00860+2.1.1.195|MetaCyc: PWY-2201|MetaCyc: PWY-7377|UniPathway: UPA00148 PP4_RS13115 ecd8c2ec8fe3bb5a1b202f8e6ad64f3c 540 SMART SM00388 179 244 2.0E-14 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS13115 ecd8c2ec8fe3bb5a1b202f8e6ad64f3c 540 PRINTS PR00344 Bacterial sensor protein C-terminal signature 324 338 1.2E-6 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS13115 ecd8c2ec8fe3bb5a1b202f8e6ad64f3c 540 PRINTS PR00344 Bacterial sensor protein C-terminal signature 342 352 1.2E-6 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS13115 ecd8c2ec8fe3bb5a1b202f8e6ad64f3c 540 PRINTS PR00344 Bacterial sensor protein C-terminal signature 359 377 1.2E-6 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS13115 ecd8c2ec8fe3bb5a1b202f8e6ad64f3c 540 SMART SM00448 421 528 1.6E-7 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS13115 ecd8c2ec8fe3bb5a1b202f8e6ad64f3c 540 SUPERFAMILY SSF52172 420 533 3.98E-16 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS13115 ecd8c2ec8fe3bb5a1b202f8e6ad64f3c 540 PANTHER PTHR24423 177 534 3.3E-79 T 22-04-2016 PP4_RS13115 ecd8c2ec8fe3bb5a1b202f8e6ad64f3c 540 PANTHER PTHR24423 3 12 3.3E-79 T 22-04-2016 PP4_RS13115 ecd8c2ec8fe3bb5a1b202f8e6ad64f3c 540 PANTHER PTHR24423:SF439 177 534 3.3E-79 T 22-04-2016 PP4_RS13115 ecd8c2ec8fe3bb5a1b202f8e6ad64f3c 540 PANTHER PTHR24423:SF439 3 12 3.3E-79 T 22-04-2016 PP4_RS13115 ecd8c2ec8fe3bb5a1b202f8e6ad64f3c 540 Pfam PF00072 Response regulator receiver domain 423 528 1.0E-8 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS13115 ecd8c2ec8fe3bb5a1b202f8e6ad64f3c 540 Gene3D G3DSA:3.40.50.2300 419 532 3.5E-17 T 22-04-2016 PP4_RS13115 ecd8c2ec8fe3bb5a1b202f8e6ad64f3c 540 SMART SM00387 288 399 2.4E-21 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS13115 ecd8c2ec8fe3bb5a1b202f8e6ad64f3c 540 Pfam PF00512 His Kinase A (phospho-acceptor) domain 180 244 2.5E-11 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS13115 ecd8c2ec8fe3bb5a1b202f8e6ad64f3c 540 SUPERFAMILY SSF55874 234 394 1.22E-30 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS13115 ecd8c2ec8fe3bb5a1b202f8e6ad64f3c 540 Gene3D G3DSA:1.10.287.130 171 238 8.3E-12 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS13115 ecd8c2ec8fe3bb5a1b202f8e6ad64f3c 540 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 289 393 2.2E-16 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS13115 ecd8c2ec8fe3bb5a1b202f8e6ad64f3c 540 Gene3D G3DSA:3.30.565.10 245 394 2.7E-28 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS13115 ecd8c2ec8fe3bb5a1b202f8e6ad64f3c 540 SUPERFAMILY SSF47384 163 245 7.46E-14 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS10310 0bf4a83fb5d86566007edb630891aa67 191 PANTHER PTHR24421:SF16 5 183 1.3E-42 T 22-04-2016 PP4_RS10310 0bf4a83fb5d86566007edb630891aa67 191 Pfam PF01339 CheB methylesterase 7 182 8.5E-54 T 22-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 PP4_RS10310 0bf4a83fb5d86566007edb630891aa67 191 Gene3D G3DSA:3.40.50.180 5 186 8.9E-63 T 22-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 PP4_RS10310 0bf4a83fb5d86566007edb630891aa67 191 SUPERFAMILY SSF52738 4 186 1.96E-57 T 22-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 PP4_RS10310 0bf4a83fb5d86566007edb630891aa67 191 PANTHER PTHR24421 5 183 1.3E-42 T 22-04-2016 PP4_RS08870 c20e546712839a4cc012ba2b299059bf 120 PANTHER PTHR33473 8 120 1.1E-39 T 22-04-2016 PP4_RS08870 c20e546712839a4cc012ba2b299059bf 120 Pfam PF02617 ATP-dependent Clp protease adaptor protein ClpS 37 115 6.7E-35 T 22-04-2016 IPR003769 Adaptor protein ClpS, core GO:0030163 PP4_RS08870 c20e546712839a4cc012ba2b299059bf 120 Hamap MF_00302 ATP-dependent Clp protease adapter protein ClpS [clpS]. 14 114 28.952 T 22-04-2016 IPR022935 ATP-dependent Clp protease adaptor protein ClpS PP4_RS08870 c20e546712839a4cc012ba2b299059bf 120 Gene3D G3DSA:3.30.1390.10 20 119 6.9E-43 T 22-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like PP4_RS08870 c20e546712839a4cc012ba2b299059bf 120 SUPERFAMILY SSF54736 35 118 4.55E-32 T 22-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like PP4_RS26290 85004c78c874c35dbfbc8b4ae949bfa2 221 PANTHER PTHR11820:SF7 19 220 1.2E-76 T 22-04-2016 PP4_RS26290 85004c78c874c35dbfbc8b4ae949bfa2 221 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 19 220 7.5E-53 T 22-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 PP4_RS26290 85004c78c874c35dbfbc8b4ae949bfa2 221 PANTHER PTHR11820 19 220 1.2E-76 T 22-04-2016 PP4_RS26290 85004c78c874c35dbfbc8b4ae949bfa2 221 SUPERFAMILY SSF56529 13 220 4.45E-65 T 22-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 PP4_RS26290 85004c78c874c35dbfbc8b4ae949bfa2 221 Gene3D G3DSA:3.90.850.10 15 220 3.4E-69 T 22-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 PP4_RS11825 b10613344bdbef8a4d2c3cc8bd7280fa 355 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 8 215 8.9E-60 T 22-04-2016 IPR003495 CobW/HypB/UreG, nucleotide-binding domain PP4_RS11825 b10613344bdbef8a4d2c3cc8bd7280fa 355 SUPERFAMILY SSF90002 272 353 3.14E-19 T 22-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal PP4_RS11825 b10613344bdbef8a4d2c3cc8bd7280fa 355 Pfam PF07683 Cobalamin synthesis protein cobW C-terminal domain 273 353 5.4E-17 T 22-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal PP4_RS11825 b10613344bdbef8a4d2c3cc8bd7280fa 355 TIGRFAM TIGR02475 CobW: cobalamin biosynthesis protein CobW 5 348 8.5E-161 T 22-04-2016 IPR012824 Cobalamin (vitamin B12) biosynthesis CobW GO:0009236 UniPathway: UPA00148 PP4_RS11825 b10613344bdbef8a4d2c3cc8bd7280fa 355 PANTHER PTHR13748 1 355 7.6E-151 T 22-04-2016 PP4_RS11825 b10613344bdbef8a4d2c3cc8bd7280fa 355 SMART SM00833 262 353 8.0E-9 T 22-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal PP4_RS11825 b10613344bdbef8a4d2c3cc8bd7280fa 355 Gene3D G3DSA:3.30.1220.10 244 353 4.5E-29 T 22-04-2016 IPR011629 Cobalamin (vitamin B12) biosynthesis CobW-like, C-terminal PP4_RS11825 b10613344bdbef8a4d2c3cc8bd7280fa 355 SUPERFAMILY SSF52540 6 227 5.76E-34 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS11825 b10613344bdbef8a4d2c3cc8bd7280fa 355 Gene3D G3DSA:3.40.50.300 6 232 5.9E-65 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS11825 b10613344bdbef8a4d2c3cc8bd7280fa 355 PANTHER PTHR13748:SF10 1 355 7.6E-151 T 22-04-2016 IPR012824 Cobalamin (vitamin B12) biosynthesis CobW GO:0009236 UniPathway: UPA00148 PP4_RS22895 128d2d0ff71cf816822c2849a14af5c1 573 Pfam PF13174 Tetratricopeptide repeat 396 420 0.095 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS22895 128d2d0ff71cf816822c2849a14af5c1 573 PANTHER PTHR23083:SF195 55 564 2.0E-64 T 22-04-2016 PP4_RS22895 128d2d0ff71cf816822c2849a14af5c1 573 Gene3D G3DSA:1.25.40.10 350 556 9.7E-30 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS22895 128d2d0ff71cf816822c2849a14af5c1 573 Gene3D G3DSA:1.25.40.10 63 79 1.1E-24 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS22895 128d2d0ff71cf816822c2849a14af5c1 573 Gene3D G3DSA:1.25.40.10 113 343 1.1E-24 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS22895 128d2d0ff71cf816822c2849a14af5c1 573 SUPERFAMILY SSF48452 110 209 7.34E-9 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS22895 128d2d0ff71cf816822c2849a14af5c1 573 SUPERFAMILY SSF48452 394 556 1.68E-21 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS22895 128d2d0ff71cf816822c2849a14af5c1 573 SUPERFAMILY SSF48452 182 386 1.52E-18 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS22895 128d2d0ff71cf816822c2849a14af5c1 573 Pfam PF13432 Tetratricopeptide repeat 290 351 3.6E-5 T 22-04-2016 PP4_RS22895 128d2d0ff71cf816822c2849a14af5c1 573 Pfam PF13432 Tetratricopeptide repeat 498 546 0.0013 T 22-04-2016 PP4_RS22895 128d2d0ff71cf816822c2849a14af5c1 573 Pfam PF14559 Tetratricopeptide repeat 235 284 2.7E-7 T 22-04-2016 PP4_RS22895 128d2d0ff71cf816822c2849a14af5c1 573 PANTHER PTHR23083 55 564 2.0E-64 T 22-04-2016 PP4_RS22895 128d2d0ff71cf816822c2849a14af5c1 573 SMART SM00028 286 319 12.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS22895 128d2d0ff71cf816822c2849a14af5c1 573 SMART SM00028 491 524 0.29 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS22895 128d2d0ff71cf816822c2849a14af5c1 573 SMART SM00028 388 421 220.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS22895 128d2d0ff71cf816822c2849a14af5c1 573 SMART SM00028 456 490 220.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS22895 128d2d0ff71cf816822c2849a14af5c1 573 SMART SM00028 353 386 320.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS12160 276e08284ef9e41e6fe3455673c303bd 557 Gene3D G3DSA:3.40.50.980 221 366 7.8E-49 T 22-04-2016 PP4_RS12160 276e08284ef9e41e6fe3455673c303bd 557 Gene3D G3DSA:3.40.50.980 18 220 6.8E-40 T 22-04-2016 PP4_RS12160 276e08284ef9e41e6fe3455673c303bd 557 Pfam PF00501 AMP-binding enzyme 24 456 1.1E-103 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PP4_RS12160 276e08284ef9e41e6fe3455673c303bd 557 SUPERFAMILY SSF56801 16 550 2.09E-161 T 22-04-2016 PP4_RS12160 276e08284ef9e41e6fe3455673c303bd 557 Gene3D G3DSA:2.30.38.10 374 447 3.3E-27 T 22-04-2016 PP4_RS12160 276e08284ef9e41e6fe3455673c303bd 557 PANTHER PTHR24095 20 555 8.6E-195 T 22-04-2016 PP4_RS12160 276e08284ef9e41e6fe3455673c303bd 557 ProSitePatterns PS00455 Putative AMP-binding domain signature. 206 217 - T 22-04-2016 IPR020845 AMP-binding, conserved site PP4_RS12160 276e08284ef9e41e6fe3455673c303bd 557 Gene3D G3DSA:3.30.300.30 453 551 1.8E-33 T 22-04-2016 PP4_RS12160 276e08284ef9e41e6fe3455673c303bd 557 Pfam PF13193 AMP-binding enzyme C-terminal domain 465 540 2.7E-18 T 22-04-2016 IPR025110 AMP-binding enzyme C-terminal domain PP4_RS19475 71feac79709ea34b076a2ef7571978f7 328 PANTHER PTHR11669:SF8 8 203 1.6E-56 T 22-04-2016 PP4_RS19475 71feac79709ea34b076a2ef7571978f7 328 Gene3D G3DSA:3.40.50.300 5 163 2.4E-53 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS19475 71feac79709ea34b076a2ef7571978f7 328 Pfam PF13177 DNA polymerase III, delta subunit 13 161 3.4E-48 T 22-04-2016 PP4_RS19475 71feac79709ea34b076a2ef7571978f7 328 TIGRFAM TIGR00678 holB: DNA polymerase III, delta' subunit 13 199 9.0E-64 T 22-04-2016 IPR004622 DNA polymerase III, delta prime subunit GO:0003887|GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS19475 71feac79709ea34b076a2ef7571978f7 328 PANTHER PTHR11669 8 203 1.6E-56 T 22-04-2016 PP4_RS19475 71feac79709ea34b076a2ef7571978f7 328 Pfam PF09115 DNA polymerase III, delta subunit, C terminal 210 321 1.1E-5 T 22-04-2016 IPR015199 DNA polymerase III, delta subunit, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS19475 71feac79709ea34b076a2ef7571978f7 328 SUPERFAMILY SSF52540 5 203 6.14E-51 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS05360 5ff2173ff4abe200aae8df812cbbd672 262 SUPERFAMILY SSF50447 10 74 1.84E-10 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain PP4_RS05360 5ff2173ff4abe200aae8df812cbbd672 262 SUPERFAMILY SSF55186 121 247 7.85E-25 T 22-04-2016 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain GO:0000166 PP4_RS05360 5ff2173ff4abe200aae8df812cbbd672 262 Pfam PF01411 tRNA synthetases class II (A) 25 72 7.5E-5 T 22-04-2016 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 PP4_RS05360 5ff2173ff4abe200aae8df812cbbd672 262 PANTHER PTHR11777 1 193 1.0E-16 T 22-04-2016 PP4_RS05360 5ff2173ff4abe200aae8df812cbbd672 262 PANTHER PTHR11777:SF16 1 193 1.0E-16 T 22-04-2016 PP4_RS08070 c740cd2b47a153806ebcbe5e1c69e068 406 Gene3D G3DSA:3.40.47.10 261 404 6.0E-48 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS08070 c740cd2b47a153806ebcbe5e1c69e068 406 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 1 244 1.3E-44 T 22-04-2016 IPR014030 Beta-ketoacyl synthase, N-terminal PP4_RS08070 c740cd2b47a153806ebcbe5e1c69e068 406 SUPERFAMILY SSF53901 1 251 1.63E-60 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS08070 c740cd2b47a153806ebcbe5e1c69e068 406 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 252 359 2.3E-29 T 22-04-2016 IPR014031 Beta-ketoacyl synthase, C-terminal PP4_RS08070 c740cd2b47a153806ebcbe5e1c69e068 406 SUPERFAMILY SSF53901 213 403 1.89E-59 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS08070 c740cd2b47a153806ebcbe5e1c69e068 406 PANTHER PTHR11712 1 404 1.2E-157 T 22-04-2016 PP4_RS08070 c740cd2b47a153806ebcbe5e1c69e068 406 ProSitePatterns PS01128 Shikimate kinase signature. 208 236 - T 22-04-2016 IPR023000 Shikimate kinase, conserved site KEGG: 00400+2.7.1.71|MetaCyc: PWY-6163|UniPathway: UPA00053 PP4_RS08070 c740cd2b47a153806ebcbe5e1c69e068 406 SMART SM00825 Beta-ketoacyl synthase 4 405 5.2E-13 T 22-04-2016 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain PP4_RS08070 c740cd2b47a153806ebcbe5e1c69e068 406 Gene3D G3DSA:3.40.47.10 6 257 1.5E-58 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS08070 c740cd2b47a153806ebcbe5e1c69e068 406 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 152 168 - T 22-04-2016 IPR018201 Beta-ketoacyl synthase, active site PP4_RS25295 736f1466a06035643ec9aa137e0a559b 393 Gene3D G3DSA:1.10.8.260 270 320 1.1E-6 T 22-04-2016 IPR023166 HI0933 insert-like domain PP4_RS25295 736f1466a06035643ec9aa137e0a559b 393 PANTHER PTHR10617:SF103 329 391 1.5E-122 T 22-04-2016 PP4_RS25295 736f1466a06035643ec9aa137e0a559b 393 SUPERFAMILY SSF51905 3 188 5.66E-58 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS25295 736f1466a06035643ec9aa137e0a559b 393 SUPERFAMILY SSF51905 336 392 5.66E-58 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS25295 736f1466a06035643ec9aa137e0a559b 393 SUPERFAMILY SSF160996 190 337 6.41E-38 T 22-04-2016 PP4_RS25295 736f1466a06035643ec9aa137e0a559b 393 Gene3D G3DSA:3.50.50.60 338 391 5.8E-50 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS25295 736f1466a06035643ec9aa137e0a559b 393 Gene3D G3DSA:3.50.50.60 3 186 5.8E-50 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS25295 736f1466a06035643ec9aa137e0a559b 393 PANTHER PTHR10617 329 391 1.5E-122 T 22-04-2016 PP4_RS25295 736f1466a06035643ec9aa137e0a559b 393 PANTHER PTHR10617 3 286 1.5E-122 T 22-04-2016 PP4_RS25295 736f1466a06035643ec9aa137e0a559b 393 PANTHER PTHR10617:SF103 3 286 1.5E-122 T 22-04-2016 PP4_RS25295 736f1466a06035643ec9aa137e0a559b 393 Gene3D G3DSA:2.40.30.10 188 269 2.4E-29 T 22-04-2016 PP4_RS25295 736f1466a06035643ec9aa137e0a559b 393 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 6 391 9.4E-128 T 22-04-2016 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like PP4_RS25295 736f1466a06035643ec9aa137e0a559b 393 Pfam PF03486 HI0933-like protein 5 391 5.2E-151 T 22-04-2016 PP4_RS25295 736f1466a06035643ec9aa137e0a559b 393 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 346 368 2.5E-5 T 22-04-2016 PP4_RS25295 736f1466a06035643ec9aa137e0a559b 393 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 152 170 2.5E-5 T 22-04-2016 PP4_RS25295 736f1466a06035643ec9aa137e0a559b 393 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 2.5E-5 T 22-04-2016 PP4_RS25295 736f1466a06035643ec9aa137e0a559b 393 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 361 368 1.2E-7 T 22-04-2016 PP4_RS25295 736f1466a06035643ec9aa137e0a559b 393 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 155 164 1.2E-7 T 22-04-2016 PP4_RS25295 736f1466a06035643ec9aa137e0a559b 393 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 1.2E-7 T 22-04-2016 PP4_RS24560 5bf9f3a4055813828248cd0a241de791 336 Pfam PF13406 Transglycosylase SLT domain 36 327 3.5E-102 T 22-04-2016 IPR031304 Transglycosylase SLT domain 2 PP4_RS24560 5bf9f3a4055813828248cd0a241de791 336 PANTHER PTHR30163:SF0 1 334 2.0E-164 T 22-04-2016 PP4_RS24560 5bf9f3a4055813828248cd0a241de791 336 Gene3D G3DSA:1.10.530.10 217 332 8.0E-57 T 22-04-2016 PP4_RS24560 5bf9f3a4055813828248cd0a241de791 336 Gene3D G3DSA:1.10.530.10 79 135 8.0E-57 T 22-04-2016 PP4_RS24560 5bf9f3a4055813828248cd0a241de791 336 TIGRFAM TIGR02282 MltB: lytic murein transglycosylase B 40 329 2.7E-119 T 22-04-2016 IPR011757 Lytic transglycosylase MltB PP4_RS24560 5bf9f3a4055813828248cd0a241de791 336 PANTHER PTHR30163 1 334 2.0E-164 T 22-04-2016 IPR011757 Lytic transglycosylase MltB PP4_RS24560 5bf9f3a4055813828248cd0a241de791 336 SUPERFAMILY SSF53955 23 330 5.81E-97 T 22-04-2016 IPR023346 Lysozyme-like domain PP4_RS22055 dad9b933e113d14cc8a833da8d5c8986 347 PANTHER PTHR10846 12 302 2.0E-61 T 22-04-2016 IPR004481 Sodium/potassium/calcium exchanger Reactome: REACT_15518 PP4_RS22055 dad9b933e113d14cc8a833da8d5c8986 347 TIGRFAM TIGR00367 TIGR00367: K+-dependent Na+/Ca+ exchanger homolog 2 302 1.6E-72 T 22-04-2016 IPR004481 Sodium/potassium/calcium exchanger Reactome: REACT_15518 PP4_RS22055 dad9b933e113d14cc8a833da8d5c8986 347 Pfam PF01699 Sodium/calcium exchanger protein 165 304 3.1E-29 T 22-04-2016 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: REACT_15518 PP4_RS22055 dad9b933e113d14cc8a833da8d5c8986 347 Pfam PF01699 Sodium/calcium exchanger protein 3 137 1.9E-23 T 22-04-2016 IPR004837 Sodium/calcium exchanger membrane region GO:0016021|GO:0055085 Reactome: REACT_15518 PP4_RS05325 f28792574097f511d73186fbdd7649d8 817 SMART SM00490 266 347 1.8E-4 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS05325 f28792574097f511d73186fbdd7649d8 817 TIGRFAM TIGR04121 DEXH_lig_assoc: DEXH box helicase, DNA ligase-associated 8 810 0.0 T 22-04-2016 IPR026362 DEXH box helicase, DNA ligase-associated PP4_RS05325 f28792574097f511d73186fbdd7649d8 817 Pfam PF00271 Helicase conserved C-terminal domain 249 348 4.1E-10 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS05325 f28792574097f511d73186fbdd7649d8 817 Gene3D G3DSA:3.40.50.300 6 197 1.9E-34 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS05325 f28792574097f511d73186fbdd7649d8 817 Pfam PF08494 DEAD/H associated 596 781 1.5E-44 T 22-04-2016 IPR013701 DEAD/H associated GO:0005524|GO:0016818 PP4_RS05325 f28792574097f511d73186fbdd7649d8 817 Pfam PF00270 DEAD/DEAH box helicase 21 192 2.5E-22 T 22-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 PP4_RS05325 f28792574097f511d73186fbdd7649d8 817 PIRSF PIRSF037307 3 812 1.3E-137 T 22-04-2016 IPR017170 Lhr-like ATP-dependent RNA helicase, predicted GO:0005524|GO:0016818 PP4_RS05325 f28792574097f511d73186fbdd7649d8 817 SMART SM00487 15 219 8.7E-26 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PP4_RS05325 f28792574097f511d73186fbdd7649d8 817 SUPERFAMILY SSF52540 26 358 5.86E-43 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS05325 f28792574097f511d73186fbdd7649d8 817 PANTHER PTHR24031 18 364 5.5E-45 T 22-04-2016 PP4_RS05325 f28792574097f511d73186fbdd7649d8 817 PANTHER PTHR24031 796 811 5.5E-45 T 22-04-2016 PP4_RS05325 f28792574097f511d73186fbdd7649d8 817 PANTHER PTHR24031 561 587 5.5E-45 T 22-04-2016 PP4_RS05325 f28792574097f511d73186fbdd7649d8 817 PANTHER PTHR24031:SF122 18 364 5.5E-45 T 22-04-2016 PP4_RS05325 f28792574097f511d73186fbdd7649d8 817 PANTHER PTHR24031:SF122 796 811 5.5E-45 T 22-04-2016 PP4_RS05325 f28792574097f511d73186fbdd7649d8 817 PANTHER PTHR24031:SF122 561 587 5.5E-45 T 22-04-2016 PP4_RS05325 f28792574097f511d73186fbdd7649d8 817 Gene3D G3DSA:3.40.50.300 241 368 3.3E-22 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS06995 bb4461db6d2449260f1f8e99e76bfc1d 104 TIGRFAM TIGR03824 FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM 11 101 4.8E-26 T 22-04-2016 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 PP4_RS06995 bb4461db6d2449260f1f8e99e76bfc1d 104 Pfam PF04316 Anti-sigma-28 factor, FlgM 47 99 9.9E-19 T 22-04-2016 IPR031316 Anti-sigma-28 factor FlgM, C-terminal PP4_RS06995 bb4461db6d2449260f1f8e99e76bfc1d 104 SUPERFAMILY SSF101498 1 101 2.35E-20 T 22-04-2016 IPR007412 Anti-sigma-28 factor, FlgM GO:0045892 PP4_RS10135 10341ec8b46cfa895c7264b3ee5997ad 303 PANTHER PTHR10025 1 284 2.7E-153 T 22-04-2016 PP4_RS10135 10341ec8b46cfa895c7264b3ee5997ad 303 Hamap MF_01576 Bifunctional protein FolD [folD]. 7 289 38.398 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 PP4_RS10135 10341ec8b46cfa895c7264b3ee5997ad 303 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 127 285 2.7E-67 T 22-04-2016 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 PP4_RS10135 10341ec8b46cfa895c7264b3ee5997ad 303 SUPERFAMILY SSF53223 7 125 1.53E-39 T 22-04-2016 PP4_RS10135 10341ec8b46cfa895c7264b3ee5997ad 303 Gene3D G3DSA:3.40.50.720 143 270 1.1E-51 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS10135 10341ec8b46cfa895c7264b3ee5997ad 303 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 9 124 8.9E-40 T 22-04-2016 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 PP4_RS10135 10341ec8b46cfa895c7264b3ee5997ad 303 SUPERFAMILY SSF51735 126 284 3.32E-50 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS10135 10341ec8b46cfa895c7264b3ee5997ad 303 ProSitePatterns PS00767 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. 266 274 - T 22-04-2016 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 PP4_RS10135 10341ec8b46cfa895c7264b3ee5997ad 303 Gene3D G3DSA:3.40.192.10 11 142 1.5E-48 T 22-04-2016 PP4_RS10135 10341ec8b46cfa895c7264b3ee5997ad 303 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 262 280 7.0E-78 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 PP4_RS10135 10341ec8b46cfa895c7264b3ee5997ad 303 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 245 261 7.0E-78 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 PP4_RS10135 10341ec8b46cfa895c7264b3ee5997ad 303 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 113 134 7.0E-78 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 PP4_RS10135 10341ec8b46cfa895c7264b3ee5997ad 303 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 207 236 7.0E-78 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 PP4_RS10135 10341ec8b46cfa895c7264b3ee5997ad 303 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 158 178 7.0E-78 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 PP4_RS10135 10341ec8b46cfa895c7264b3ee5997ad 303 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 78 105 7.0E-78 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 PP4_RS10135 10341ec8b46cfa895c7264b3ee5997ad 303 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 37 59 7.0E-78 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 PP4_RS03105 899ed8f001d89db4911120fa39c15f3e 318 Pfam PF04773 FecR protein 113 204 2.2E-17 T 22-04-2016 IPR006860 FecR protein PP4_RS03105 899ed8f001d89db4911120fa39c15f3e 318 Pfam PF16220 Domain of unknown function (DUF4880) 19 60 3.7E-10 T 22-04-2016 IPR032623 FecR, N-terminal PP4_RS03105 899ed8f001d89db4911120fa39c15f3e 318 PIRSF PIRSF018266 8 318 5.5E-86 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS03105 899ed8f001d89db4911120fa39c15f3e 318 PANTHER PTHR30273:SF3 10 316 6.2E-96 T 22-04-2016 PP4_RS03105 899ed8f001d89db4911120fa39c15f3e 318 PANTHER PTHR30273 10 316 6.2E-96 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS18895 4f1eda80eb0b2118ec92ae7f58f55a92 403 PANTHER PTHR23515 1 395 4.2E-220 T 22-04-2016 PP4_RS18895 4f1eda80eb0b2118ec92ae7f58f55a92 403 Gene3D G3DSA:1.20.1250.20 12 196 1.4E-24 T 22-04-2016 PP4_RS18895 4f1eda80eb0b2118ec92ae7f58f55a92 403 Pfam PF07690 Major Facilitator Superfamily 23 349 6.1E-43 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS18895 4f1eda80eb0b2118ec92ae7f58f55a92 403 PANTHER PTHR23515:SF4 1 395 4.2E-220 T 22-04-2016 PP4_RS18895 4f1eda80eb0b2118ec92ae7f58f55a92 403 SUPERFAMILY SSF103473 5 386 1.83E-58 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS18895 4f1eda80eb0b2118ec92ae7f58f55a92 403 TIGRFAM TIGR00886 2A0108: nitrite transporter 13 347 7.7E-95 T 22-04-2016 IPR004737 Nitrate transporter GO:0015112|GO:0015113|GO:0015706|GO:0015707|GO:0016021 PP4_RS18895 4f1eda80eb0b2118ec92ae7f58f55a92 403 Gene3D G3DSA:1.20.1250.20 202 378 6.7E-19 T 22-04-2016 PP4_RS15015 66d31ff3db710d75abc738c8d9252a8e 435 Gene3D G3DSA:1.20.1250.20 3 195 2.8E-46 T 22-04-2016 PP4_RS15015 66d31ff3db710d75abc738c8d9252a8e 435 PIRSF PIRSF002808 1 429 2.0E-35 T 22-04-2016 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 PP4_RS15015 66d31ff3db710d75abc738c8d9252a8e 435 SUPERFAMILY SSF103473 2 415 6.8E-80 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS15015 66d31ff3db710d75abc738c8d9252a8e 435 PANTHER PTHR11662 1 418 1.5E-101 T 22-04-2016 PP4_RS15015 66d31ff3db710d75abc738c8d9252a8e 435 PANTHER PTHR11662:SF277 1 418 1.5E-101 T 22-04-2016 PP4_RS15015 66d31ff3db710d75abc738c8d9252a8e 435 Pfam PF07690 Major Facilitator Superfamily 12 356 2.4E-52 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS15015 66d31ff3db710d75abc738c8d9252a8e 435 Gene3D G3DSA:1.20.1250.20 221 416 2.6E-22 T 22-04-2016 PP4_RS23695 ea2b8cea062370002937d27b5d0f5987 251 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 5 240 1.6E-66 T 22-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 PP4_RS23695 ea2b8cea062370002937d27b5d0f5987 251 Pfam PF00121 Triosephosphate isomerase 5 246 3.1E-88 T 22-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 PP4_RS23695 ea2b8cea062370002937d27b5d0f5987 251 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 249 40.25 T 22-04-2016 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 PP4_RS23695 ea2b8cea062370002937d27b5d0f5987 251 ProSitePatterns PS00171 Triosephosphate isomerase active site. 165 175 - T 22-04-2016 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 PP4_RS23695 ea2b8cea062370002937d27b5d0f5987 251 PANTHER PTHR21139 1 249 1.3E-123 T 22-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 PP4_RS23695 ea2b8cea062370002937d27b5d0f5987 251 SUPERFAMILY SSF51351 1 248 7.98E-90 T 22-04-2016 IPR000652 Triosephosphate isomerase GO:0004807|GO:0008152 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|UniPathway: UPA00109|UniPathway: UPA00138 PP4_RS23695 ea2b8cea062370002937d27b5d0f5987 251 Gene3D G3DSA:3.20.20.70 1 249 5.9E-100 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS18450 3760e00c01a9c4e5cd82c6263e3165b0 303 Gene3D G3DSA:3.40.190.10 176 264 8.9E-20 T 22-04-2016 PP4_RS18450 3760e00c01a9c4e5cd82c6263e3165b0 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.3E-12 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS18450 3760e00c01a9c4e5cd82c6263e3165b0 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.3E-12 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS18450 3760e00c01a9c4e5cd82c6263e3165b0 303 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.3E-12 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS18450 3760e00c01a9c4e5cd82c6263e3165b0 303 PANTHER PTHR30346:SF3 1 295 3.2E-100 T 22-04-2016 PP4_RS18450 3760e00c01a9c4e5cd82c6263e3165b0 303 Pfam PF03466 LysR substrate binding domain 89 289 1.8E-43 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS18450 3760e00c01a9c4e5cd82c6263e3165b0 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 2.1E-24 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS18450 3760e00c01a9c4e5cd82c6263e3165b0 303 SUPERFAMILY SSF46785 4 110 1.62E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS18450 3760e00c01a9c4e5cd82c6263e3165b0 303 PANTHER PTHR30346 1 295 3.2E-100 T 22-04-2016 PP4_RS18450 3760e00c01a9c4e5cd82c6263e3165b0 303 SUPERFAMILY SSF53850 90 293 8.21E-42 T 22-04-2016 PP4_RS18450 3760e00c01a9c4e5cd82c6263e3165b0 303 Gene3D G3DSA:1.10.10.10 3 85 9.5E-32 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS18450 3760e00c01a9c4e5cd82c6263e3165b0 303 Gene3D G3DSA:3.40.190.10 90 175 1.3E-16 T 22-04-2016 PP4_RS10635 1f12b46e581d20dfadd4784e0fc88209 750 Pfam PF00512 His Kinase A (phospho-acceptor) domain 267 332 6.8E-17 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS10635 1f12b46e581d20dfadd4784e0fc88209 750 PANTHER PTHR24423 246 627 3.0E-133 T 22-04-2016 PP4_RS10635 1f12b46e581d20dfadd4784e0fc88209 750 PANTHER PTHR24423 38 67 3.0E-133 T 22-04-2016 PP4_RS10635 1f12b46e581d20dfadd4784e0fc88209 750 Gene3D G3DSA:1.10.287.130 261 328 3.2E-14 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS10635 1f12b46e581d20dfadd4784e0fc88209 750 PRINTS PR00344 Bacterial sensor protein C-terminal signature 479 492 1.0E-15 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS10635 1f12b46e581d20dfadd4784e0fc88209 750 PRINTS PR00344 Bacterial sensor protein C-terminal signature 438 448 1.0E-15 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS10635 1f12b46e581d20dfadd4784e0fc88209 750 PRINTS PR00344 Bacterial sensor protein C-terminal signature 420 434 1.0E-15 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS10635 1f12b46e581d20dfadd4784e0fc88209 750 PRINTS PR00344 Bacterial sensor protein C-terminal signature 455 473 1.0E-15 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS10635 1f12b46e581d20dfadd4784e0fc88209 750 PANTHER PTHR24423:SF382 246 627 3.0E-133 T 22-04-2016 PP4_RS10635 1f12b46e581d20dfadd4784e0fc88209 750 PANTHER PTHR24423:SF382 38 67 3.0E-133 T 22-04-2016 PP4_RS10635 1f12b46e581d20dfadd4784e0fc88209 750 SUPERFAMILY SSF55874 321 492 1.44E-42 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS10635 1f12b46e581d20dfadd4784e0fc88209 750 Gene3D G3DSA:3.40.50.2300 507 617 1.4E-31 T 22-04-2016 PP4_RS10635 1f12b46e581d20dfadd4784e0fc88209 750 Pfam PF00072 Response regulator receiver domain 514 626 5.1E-22 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS10635 1f12b46e581d20dfadd4784e0fc88209 750 Pfam PF00672 HAMP domain 150 222 6.3E-9 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS10635 1f12b46e581d20dfadd4784e0fc88209 750 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 381 492 3.4E-27 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS10635 1f12b46e581d20dfadd4784e0fc88209 750 SMART SM00388 267 332 4.6E-21 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS10635 1f12b46e581d20dfadd4784e0fc88209 750 Gene3D G3DSA:1.20.120.160 618 749 2.7E-18 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS10635 1f12b46e581d20dfadd4784e0fc88209 750 Gene3D G3DSA:3.30.565.10 335 495 4.1E-43 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS10635 1f12b46e581d20dfadd4784e0fc88209 750 SMART SM00448 512 626 8.5E-29 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS10635 1f12b46e581d20dfadd4784e0fc88209 750 Pfam PF17149 Periplasmic sensor domain found in signal transduction proteins 36 142 4.9E-14 T 22-04-2016 IPR033414 Periplasmic sensor domain UniPathway: UPA00073 PP4_RS10635 1f12b46e581d20dfadd4784e0fc88209 750 SUPERFAMILY SSF52172 512 630 2.13E-30 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS10635 1f12b46e581d20dfadd4784e0fc88209 750 SUPERFAMILY SSF47226 641 749 5.23E-18 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS10635 1f12b46e581d20dfadd4784e0fc88209 750 SUPERFAMILY SSF47384 253 332 1.84E-18 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS10635 1f12b46e581d20dfadd4784e0fc88209 750 Pfam PF01627 Hpt domain 661 742 6.5E-10 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS10635 1f12b46e581d20dfadd4784e0fc88209 750 SMART SM00387 379 495 2.5E-37 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS25760 682d2fb066239d30692e8e85e8b4e0dc 484 Gene3D G3DSA:3.40.250.10 392 481 7.4E-7 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS25760 682d2fb066239d30692e8e85e8b4e0dc 484 PANTHER PTHR14911 3 418 1.6E-229 T 22-04-2016 PP4_RS25760 682d2fb066239d30692e8e85e8b4e0dc 484 SUPERFAMILY SSF52402 182 374 2.87E-37 T 22-04-2016 PP4_RS25760 682d2fb066239d30692e8e85e8b4e0dc 484 Hamap MF_00021 tRNA sulfurtransferase [thiI]. 1 484 203.236 T 22-04-2016 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 UniPathway: UPA00060 PP4_RS25760 682d2fb066239d30692e8e85e8b4e0dc 484 SUPERFAMILY SSF143437 1 175 4.19E-48 T 22-04-2016 PP4_RS25760 682d2fb066239d30692e8e85e8b4e0dc 484 PANTHER PTHR14911:SF15 3 418 1.6E-229 T 22-04-2016 PP4_RS25760 682d2fb066239d30692e8e85e8b4e0dc 484 Pfam PF02926 THUMP domain 28 166 9.4E-20 T 22-04-2016 IPR004114 THUMP domain GO:0003723 PP4_RS25760 682d2fb066239d30692e8e85e8b4e0dc 484 SMART SM00981 77 167 1.3E-20 T 22-04-2016 IPR004114 THUMP domain GO:0003723 PP4_RS25760 682d2fb066239d30692e8e85e8b4e0dc 484 Gene3D G3DSA:3.40.50.620 175 335 3.1E-31 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS25760 682d2fb066239d30692e8e85e8b4e0dc 484 Pfam PF02568 Thiamine biosynthesis protein (ThiI) 179 370 1.3E-59 T 22-04-2016 IPR020536 Thil, AANH domain GO:0004810 UniPathway: UPA00060 PP4_RS25760 682d2fb066239d30692e8e85e8b4e0dc 484 SUPERFAMILY SSF52821 394 482 1.65E-7 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS25760 682d2fb066239d30692e8e85e8b4e0dc 484 TIGRFAM TIGR04271 ThiI_C_thiazole: thiazole biosynthesis domain 385 483 2.0E-35 T 22-04-2016 IPR026340 Thiazole biosynthesis domain GO:0052837 UniPathway: UPA00060 PP4_RS25760 682d2fb066239d30692e8e85e8b4e0dc 484 TIGRFAM TIGR00342 TIGR00342: tRNA sulfurtransferase ThiI 4 371 7.9E-102 T 22-04-2016 IPR003720 tRNA sulfurtransferase ThiI GO:0005737|GO:0016783|GO:0034227 UniPathway: UPA00060 PP4_RS04220 c12886b8a3933b43e6eb8de008dcbc13 197 PANTHER PTHR10134:SF8 1 195 1.5E-104 T 22-04-2016 PP4_RS04220 c12886b8a3933b43e6eb8de008dcbc13 197 Pfam PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal 2 40 3.1E-12 T 22-04-2016 IPR019470 Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 PP4_RS04220 c12886b8a3933b43e6eb8de008dcbc13 197 SUPERFAMILY SSF50022 30 193 8.97E-40 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 PP4_RS04220 c12886b8a3933b43e6eb8de008dcbc13 197 TIGRFAM TIGR01416 Rieske_proteo: ubiquinol-cytochrome c reductase, iron-sulfur subunit 9 191 1.9E-68 T 22-04-2016 IPR006317 Ubiquinol-cytochrome c reductase, iron-sulphur subunit GO:0008121|GO:0055114 KEGG: 00190+1.10.2.2|MetaCyc: PWY-3781|MetaCyc: PWY-6692|MetaCyc: PWY-7082|MetaCyc: PWY-7279 PP4_RS04220 c12886b8a3933b43e6eb8de008dcbc13 197 PRINTS PR00162 Rieske 2Fe-2S subunit signature 150 162 3.5E-9 T 22-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 PP4_RS04220 c12886b8a3933b43e6eb8de008dcbc13 197 PRINTS PR00162 Rieske 2Fe-2S subunit signature 163 175 3.5E-9 T 22-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 PP4_RS04220 c12886b8a3933b43e6eb8de008dcbc13 197 PRINTS PR00162 Rieske 2Fe-2S subunit signature 119 130 3.5E-9 T 22-04-2016 IPR005805 Rieske iron-sulphur protein, C-terminal GO:0016020|GO:0055114 PP4_RS04220 c12886b8a3933b43e6eb8de008dcbc13 197 PANTHER PTHR10134 1 195 1.5E-104 T 22-04-2016 IPR014349 Rieske iron-sulphur protein GO:0016679|GO:0055114 PP4_RS04220 c12886b8a3933b43e6eb8de008dcbc13 197 Pfam PF00355 Rieske [2Fe-2S] domain 62 178 5.6E-9 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 PP4_RS04220 c12886b8a3933b43e6eb8de008dcbc13 197 Gene3D G3DSA:2.102.10.10 7 194 7.4E-41 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 PP4_RS20225 ece2b149229fe6cfd9c46df20e60e8c1 98 PANTHER PTHR12735:SF3 3 98 6.9E-29 T 22-04-2016 PP4_RS20225 ece2b149229fe6cfd9c46df20e60e8c1 98 PANTHER PTHR12735 3 98 6.9E-29 T 22-04-2016 PP4_RS20225 ece2b149229fe6cfd9c46df20e60e8c1 98 Pfam PF01722 BolA-like protein 13 80 3.4E-25 T 22-04-2016 IPR002634 BolA protein PP4_RS20225 ece2b149229fe6cfd9c46df20e60e8c1 98 PIRSF PIRSF003113 1 95 1.5E-31 T 22-04-2016 IPR002634 BolA protein PP4_RS20225 ece2b149229fe6cfd9c46df20e60e8c1 98 SUPERFAMILY SSF82657 1 84 9.42E-29 T 22-04-2016 IPR002634 BolA protein PP4_RS20225 ece2b149229fe6cfd9c46df20e60e8c1 98 Gene3D G3DSA:3.30.300.90 1 97 1.4E-29 T 22-04-2016 IPR002634 BolA protein PP4_RS17430 f268a178dfbb9dc0c0916ef13af50e26 288 PANTHER PTHR30126:SF21 1 288 1.1E-118 T 22-04-2016 PP4_RS17430 f268a178dfbb9dc0c0916ef13af50e26 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.9E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS17430 f268a178dfbb9dc0c0916ef13af50e26 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.9E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS17430 f268a178dfbb9dc0c0916ef13af50e26 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.9E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS17430 f268a178dfbb9dc0c0916ef13af50e26 288 Gene3D G3DSA:3.40.190.10 85 193 3.3E-10 T 22-04-2016 PP4_RS17430 f268a178dfbb9dc0c0916ef13af50e26 288 Gene3D G3DSA:1.10.10.10 1 81 3.9E-26 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS17430 f268a178dfbb9dc0c0916ef13af50e26 288 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 2.4E-19 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS17430 f268a178dfbb9dc0c0916ef13af50e26 288 Pfam PF03466 LysR substrate binding domain 89 267 6.6E-16 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS17430 f268a178dfbb9dc0c0916ef13af50e26 288 PANTHER PTHR30126 1 288 1.1E-118 T 22-04-2016 PP4_RS17430 f268a178dfbb9dc0c0916ef13af50e26 288 SUPERFAMILY SSF53850 88 267 1.27E-18 T 22-04-2016 PP4_RS17430 f268a178dfbb9dc0c0916ef13af50e26 288 SUPERFAMILY SSF46785 1 108 3.41E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS20945 cac45f474dfb5f968748e256ada8dd46 429 SUPERFAMILY SSF54826 3 138 1.9E-55 T 22-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 PP4_RS20945 cac45f474dfb5f968748e256ada8dd46 429 Gene3D G3DSA:3.20.20.120 128 427 3.5E-137 T 22-04-2016 IPR029065 Enolase C-terminal domain-like PP4_RS20945 cac45f474dfb5f968748e256ada8dd46 429 Pfam PF00113 Enolase, C-terminal TIM barrel domain 144 426 1.2E-136 T 22-04-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 PP4_RS20945 cac45f474dfb5f968748e256ada8dd46 429 SUPERFAMILY SSF51604 143 427 6.42E-129 T 22-04-2016 IPR029065 Enolase C-terminal domain-like PP4_RS20945 cac45f474dfb5f968748e256ada8dd46 429 Pfam PF03952 Enolase, N-terminal domain 4 134 3.8E-57 T 22-04-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 PP4_RS20945 cac45f474dfb5f968748e256ada8dd46 429 PANTHER PTHR11902 1 429 5.0E-274 T 22-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS20945 cac45f474dfb5f968748e256ada8dd46 429 Hamap MF_00318 Enolase [eno]. 2 415 44.169 T 22-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS20945 cac45f474dfb5f968748e256ada8dd46 429 PIRSF PIRSF001400 1 429 1.1E-190 T 22-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS20945 cac45f474dfb5f968748e256ada8dd46 429 SMART SM01193 4 134 4.2E-91 T 22-04-2016 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 PP4_RS20945 cac45f474dfb5f968748e256ada8dd46 429 PRINTS PR00148 Enolase signature 338 352 1.2E-44 T 22-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS20945 cac45f474dfb5f968748e256ada8dd46 429 PRINTS PR00148 Enolase signature 165 178 1.2E-44 T 22-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS20945 cac45f474dfb5f968748e256ada8dd46 429 PRINTS PR00148 Enolase signature 367 384 1.2E-44 T 22-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS20945 cac45f474dfb5f968748e256ada8dd46 429 PRINTS PR00148 Enolase signature 107 123 1.2E-44 T 22-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS20945 cac45f474dfb5f968748e256ada8dd46 429 PRINTS PR00148 Enolase signature 37 51 1.2E-44 T 22-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS20945 cac45f474dfb5f968748e256ada8dd46 429 PRINTS PR00148 Enolase signature 315 326 1.2E-44 T 22-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS20945 cac45f474dfb5f968748e256ada8dd46 429 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 427 1.7E-203 T 22-04-2016 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS20945 cac45f474dfb5f968748e256ada8dd46 429 SMART SM01192 143 429 1.4E-220 T 22-04-2016 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 PP4_RS20945 cac45f474dfb5f968748e256ada8dd46 429 ProSitePatterns PS00164 Enolase signature. 338 351 - T 22-04-2016 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: REACT_474|UniPathway: UPA00109 PP4_RS20945 cac45f474dfb5f968748e256ada8dd46 429 Gene3D G3DSA:3.30.390.10 3 125 1.9E-54 T 22-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 PP4_RS25980 db521fa8c8a669a31ad4e9299469a51d 232 Pfam PF05036 Sporulation related domain 153 222 6.4E-18 T 22-04-2016 IPR007730 Sporulation-related domain GO:0042834 PP4_RS25980 db521fa8c8a669a31ad4e9299469a51d 232 Gene3D G3DSA:3.30.70.1070 149 225 2.1E-23 T 22-04-2016 IPR007730 Sporulation-related domain GO:0042834 PP4_RS25980 db521fa8c8a669a31ad4e9299469a51d 232 SUPERFAMILY SSF110997 153 225 8.63E-18 T 22-04-2016 IPR007730 Sporulation-related domain GO:0042834 PP4_RS11070 fdfc85a66bf1bd946d6c955d04e0171c 161 PANTHER PTHR30466:SF1 2 153 1.6E-36 T 22-04-2016 PP4_RS11070 fdfc85a66bf1bd946d6c955d04e0171c 161 Pfam PF01613 Flavin reductase like domain 12 157 6.2E-38 T 22-04-2016 IPR002563 Flavin reductase like domain GO:0010181 PP4_RS11070 fdfc85a66bf1bd946d6c955d04e0171c 161 SUPERFAMILY SSF50475 2 155 4.22E-45 T 22-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 PP4_RS11070 fdfc85a66bf1bd946d6c955d04e0171c 161 SMART SM00903 11 156 8.6E-51 T 22-04-2016 IPR002563 Flavin reductase like domain GO:0010181 PP4_RS11070 fdfc85a66bf1bd946d6c955d04e0171c 161 Gene3D G3DSA:2.30.110.10 4 158 1.7E-49 T 22-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 PP4_RS11070 fdfc85a66bf1bd946d6c955d04e0171c 161 PANTHER PTHR30466 2 153 1.6E-36 T 22-04-2016 PP4_RS07445 85d16a8701b72d2c02855637ec68563b 510 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 45 477 4.2E-79 T 22-04-2016 IPR001248 Purine-cytosine permease GO:0005215|GO:0016020|GO:0055085 PP4_RS07445 85d16a8701b72d2c02855637ec68563b 510 PANTHER PTHR30618 27 492 1.1E-261 T 22-04-2016 PP4_RS07445 85d16a8701b72d2c02855637ec68563b 510 PANTHER PTHR30618:SF6 27 492 1.1E-261 T 22-04-2016 PP4_RS12885 747ea2199b2aff3d0ce92aa6c75dfe91 230 Pfam PF05857 TraX protein 6 230 2.8E-38 T 22-04-2016 IPR008875 TraX PP4_RS25765 e4b864e3b3730e706efe746213a9de80 468 TIGRFAM TIGR00653 GlnA: glutamine synthetase, type I 5 467 2.5E-201 T 22-04-2016 IPR004809 Glutamine synthetase type I GO:0004356|GO:0005737|GO:0009399 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS25765 e4b864e3b3730e706efe746213a9de80 468 Pfam PF03951 Glutamine synthetase, beta-Grasp domain 12 94 5.0E-29 T 22-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS25765 e4b864e3b3730e706efe746213a9de80 468 SUPERFAMILY SSF55931 101 467 9.02E-137 T 22-04-2016 PP4_RS25765 e4b864e3b3730e706efe746213a9de80 468 ProSitePatterns PS00182 Glutamine synthetase class-I adenylation site. 385 397 - T 22-04-2016 IPR001637 Glutamine synthetase class-I, adenylation site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS25765 e4b864e3b3730e706efe746213a9de80 468 Pfam PF00120 Glutamine synthetase, catalytic domain 102 465 3.9E-138 T 22-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS25765 e4b864e3b3730e706efe746213a9de80 468 PANTHER PTHR20852:SF15 1 137 1.1E-260 T 22-04-2016 PP4_RS25765 e4b864e3b3730e706efe746213a9de80 468 PANTHER PTHR20852:SF15 160 468 1.1E-260 T 22-04-2016 PP4_RS25765 e4b864e3b3730e706efe746213a9de80 468 SUPERFAMILY SSF54368 5 99 1.31E-31 T 22-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS25765 e4b864e3b3730e706efe746213a9de80 468 Gene3D G3DSA:3.30.590.10 105 454 2.7E-137 T 22-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 PP4_RS25765 e4b864e3b3730e706efe746213a9de80 468 SMART SM01230 101 378 1.2E-143 T 22-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS25765 e4b864e3b3730e706efe746213a9de80 468 PANTHER PTHR20852 1 137 1.1E-260 T 22-04-2016 PP4_RS25765 e4b864e3b3730e706efe746213a9de80 468 PANTHER PTHR20852 160 468 1.1E-260 T 22-04-2016 PP4_RS25765 e4b864e3b3730e706efe746213a9de80 468 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 258 273 - T 22-04-2016 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS25765 e4b864e3b3730e706efe746213a9de80 468 ProSitePatterns PS00180 Glutamine synthetase signature 1. 49 67 - T 22-04-2016 IPR027302 Glutamine synthetase, N-terminal conserved site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS25765 e4b864e3b3730e706efe746213a9de80 468 Gene3D G3DSA:3.10.20.70 5 104 3.9E-35 T 22-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS20625 d7f6fcd9fec0e0939e1f490184ba1859 351 SUPERFAMILY SSF52733 5 346 1.15E-118 T 22-04-2016 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 PP4_RS20625 d7f6fcd9fec0e0939e1f490184ba1859 351 PANTHER PTHR21712:SF4 11 349 6.0E-121 T 22-04-2016 PP4_RS20625 d7f6fcd9fec0e0939e1f490184ba1859 351 Gene3D G3DSA:3.40.50.10210 72 329 4.0E-108 T 22-04-2016 PP4_RS20625 d7f6fcd9fec0e0939e1f490184ba1859 351 Pfam PF02277 Phosphoribosyltransferase 11 346 1.1E-133 T 22-04-2016 IPR003200 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase-like GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 PP4_RS20625 d7f6fcd9fec0e0939e1f490184ba1859 351 Gene3D G3DSA:1.10.1610.10 4 71 3.7E-32 T 22-04-2016 IPR023195 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, N-terminal GO:0008939|GO:0009236 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 PP4_RS20625 d7f6fcd9fec0e0939e1f490184ba1859 351 PANTHER PTHR21712 11 349 6.0E-121 T 22-04-2016 PP4_RS20625 d7f6fcd9fec0e0939e1f490184ba1859 351 TIGRFAM TIGR03160 cobT_DBIPRT: nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 13 346 1.7E-134 T 22-04-2016 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 PP4_RS20625 d7f6fcd9fec0e0939e1f490184ba1859 351 Hamap MF_00230 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [cobT]. 12 348 37.748 T 22-04-2016 IPR017846 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase, prokaryotic GO:0008939|GO:0009163 KEGG: 00860+2.4.2.21|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00061 PP4_RS15070 e4b855f7755568c7d5d3662fc7dba0ba 304 SUPERFAMILY SSF53850 93 295 1.99E-35 T 22-04-2016 PP4_RS15070 e4b855f7755568c7d5d3662fc7dba0ba 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 69 1.1E-16 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS15070 e4b855f7755568c7d5d3662fc7dba0ba 304 Pfam PF03466 LysR substrate binding domain 101 294 8.3E-20 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS15070 e4b855f7755568c7d5d3662fc7dba0ba 304 Gene3D G3DSA:1.10.10.10 2 89 1.0E-29 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS15070 e4b855f7755568c7d5d3662fc7dba0ba 304 Gene3D G3DSA:3.40.190.10 273 300 5.8E-23 T 22-04-2016 PP4_RS15070 e4b855f7755568c7d5d3662fc7dba0ba 304 Gene3D G3DSA:3.40.190.10 93 176 5.8E-23 T 22-04-2016 PP4_RS15070 e4b855f7755568c7d5d3662fc7dba0ba 304 PANTHER PTHR30118 1 298 2.1E-111 T 22-04-2016 PP4_RS15070 e4b855f7755568c7d5d3662fc7dba0ba 304 SUPERFAMILY SSF46785 7 88 1.7E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS15070 e4b855f7755568c7d5d3662fc7dba0ba 304 Gene3D G3DSA:3.40.190.10 183 268 2.0E-25 T 22-04-2016 PP4_RS15070 e4b855f7755568c7d5d3662fc7dba0ba 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 6.5E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS15070 e4b855f7755568c7d5d3662fc7dba0ba 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 6.5E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS15070 e4b855f7755568c7d5d3662fc7dba0ba 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 6.5E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS15070 e4b855f7755568c7d5d3662fc7dba0ba 304 PANTHER PTHR30118:SF8 1 298 2.1E-111 T 22-04-2016 PP4_RS24655 4353055e438b859a68463cd2ee1c4018 923 SMART SM00387 509 624 7.8E-14 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS24655 4353055e438b859a68463cd2ee1c4018 923 Gene3D G3DSA:3.40.50.2300 789 914 6.7E-40 T 22-04-2016 PP4_RS24655 4353055e438b859a68463cd2ee1c4018 923 SUPERFAMILY SSF55874 451 622 2.49E-28 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS24655 4353055e438b859a68463cd2ee1c4018 923 SUPERFAMILY SSF52172 789 911 3.56E-35 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS24655 4353055e438b859a68463cd2ee1c4018 923 Pfam PF07695 7TM diverse intracellular signalling 172 371 1.9E-21 T 22-04-2016 IPR011623 7TM-DISM receptor, extracellular domain, type 1 PP4_RS24655 4353055e438b859a68463cd2ee1c4018 923 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 509 623 3.4E-13 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS24655 4353055e438b859a68463cd2ee1c4018 923 Gene3D G3DSA:1.10.287.130 395 458 7.6E-16 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS24655 4353055e438b859a68463cd2ee1c4018 923 Pfam PF07696 7TMR-DISM extracellular 2 31 158 1.9E-11 T 22-04-2016 IPR011622 7TM-DISM receptor, extracellular domain, type 2 PP4_RS24655 4353055e438b859a68463cd2ee1c4018 923 Gene3D G3DSA:3.30.565.10 463 626 2.5E-29 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS24655 4353055e438b859a68463cd2ee1c4018 923 SMART SM00388 397 462 9.2E-23 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS24655 4353055e438b859a68463cd2ee1c4018 923 Pfam PF00072 Response regulator receiver domain 792 906 6.4E-22 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS24655 4353055e438b859a68463cd2ee1c4018 923 Pfam PF00072 Response regulator receiver domain 643 759 7.0E-20 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS24655 4353055e438b859a68463cd2ee1c4018 923 Gene3D G3DSA:3.40.50.2300 639 768 2.1E-28 T 22-04-2016 PP4_RS24655 4353055e438b859a68463cd2ee1c4018 923 PANTHER PTHR24423 789 915 3.1E-104 T 22-04-2016 PP4_RS24655 4353055e438b859a68463cd2ee1c4018 923 PANTHER PTHR24423 395 637 3.1E-104 T 22-04-2016 PP4_RS24655 4353055e438b859a68463cd2ee1c4018 923 PANTHER PTHR24423 2 7 3.1E-104 T 22-04-2016 PP4_RS24655 4353055e438b859a68463cd2ee1c4018 923 SMART SM00448 790 906 7.3E-32 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS24655 4353055e438b859a68463cd2ee1c4018 923 SMART SM00448 641 760 3.2E-20 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS24655 4353055e438b859a68463cd2ee1c4018 923 Pfam PF00512 His Kinase A (phospho-acceptor) domain 397 461 1.5E-18 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS24655 4353055e438b859a68463cd2ee1c4018 923 SUPERFAMILY SSF52172 640 767 1.37E-28 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS24655 4353055e438b859a68463cd2ee1c4018 923 SUPERFAMILY SSF47384 391 463 1.96E-17 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS20150 33ecbba23512046883a508df0c64092e 558 PRINTS PR00681 Ribosomal protein S1 signature 126 143 1.7E-88 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 PP4_RS20150 33ecbba23512046883a508df0c64092e 558 PRINTS PR00681 Ribosomal protein S1 signature 155 175 1.7E-88 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 PP4_RS20150 33ecbba23512046883a508df0c64092e 558 PRINTS PR00681 Ribosomal protein S1 signature 39 53 1.7E-88 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 PP4_RS20150 33ecbba23512046883a508df0c64092e 558 PRINTS PR00681 Ribosomal protein S1 signature 84 103 1.7E-88 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 PP4_RS20150 33ecbba23512046883a508df0c64092e 558 PRINTS PR00681 Ribosomal protein S1 signature 290 309 1.7E-88 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 PP4_RS20150 33ecbba23512046883a508df0c64092e 558 PRINTS PR00681 Ribosomal protein S1 signature 212 233 1.7E-88 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 PP4_RS20150 33ecbba23512046883a508df0c64092e 558 PRINTS PR00681 Ribosomal protein S1 signature 108 124 1.7E-88 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 PP4_RS20150 33ecbba23512046883a508df0c64092e 558 PRINTS PR00681 Ribosomal protein S1 signature 21 39 1.7E-88 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 PP4_RS20150 33ecbba23512046883a508df0c64092e 558 PRINTS PR00681 Ribosomal protein S1 signature 330 348 1.7E-88 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 PP4_RS20150 33ecbba23512046883a508df0c64092e 558 SMART SM00316 275 347 2.3E-26 T 22-04-2016 IPR022967 RNA-binding domain, S1 PP4_RS20150 33ecbba23512046883a508df0c64092e 558 SMART SM00316 19 87 5.7E-5 T 22-04-2016 IPR022967 RNA-binding domain, S1 PP4_RS20150 33ecbba23512046883a508df0c64092e 558 SMART SM00316 449 520 2.9E-20 T 22-04-2016 IPR022967 RNA-binding domain, S1 PP4_RS20150 33ecbba23512046883a508df0c64092e 558 SMART SM00316 362 434 1.6E-21 T 22-04-2016 IPR022967 RNA-binding domain, S1 PP4_RS20150 33ecbba23512046883a508df0c64092e 558 SMART SM00316 103 171 2.0E-8 T 22-04-2016 IPR022967 RNA-binding domain, S1 PP4_RS20150 33ecbba23512046883a508df0c64092e 558 SMART SM00316 190 260 2.0E-28 T 22-04-2016 IPR022967 RNA-binding domain, S1 PP4_RS20150 33ecbba23512046883a508df0c64092e 558 PANTHER PTHR10724:SF6 1 514 1.8E-268 T 22-04-2016 PP4_RS20150 33ecbba23512046883a508df0c64092e 558 Gene3D G3DSA:2.40.50.140 364 443 1.9E-25 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS20150 33ecbba23512046883a508df0c64092e 558 SUPERFAMILY SSF50249 255 356 3.13E-26 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS20150 33ecbba23512046883a508df0c64092e 558 PANTHER PTHR10724 1 514 1.8E-268 T 22-04-2016 PP4_RS20150 33ecbba23512046883a508df0c64092e 558 SUPERFAMILY SSF50249 1 112 1.87E-19 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS20150 33ecbba23512046883a508df0c64092e 558 SUPERFAMILY SSF50249 105 184 1.49E-14 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS20150 33ecbba23512046883a508df0c64092e 558 TIGRFAM TIGR00717 rpsA: ribosomal protein bS1 3 520 4.0E-219 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 PP4_RS20150 33ecbba23512046883a508df0c64092e 558 Gene3D G3DSA:2.40.50.140 280 363 5.2E-29 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS20150 33ecbba23512046883a508df0c64092e 558 Gene3D G3DSA:2.40.50.140 192 279 1.3E-30 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS20150 33ecbba23512046883a508df0c64092e 558 Gene3D G3DSA:2.40.50.140 21 100 4.2E-10 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS20150 33ecbba23512046883a508df0c64092e 558 Gene3D G3DSA:2.40.50.140 101 172 2.3E-14 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS20150 33ecbba23512046883a508df0c64092e 558 Gene3D G3DSA:2.40.50.140 444 520 1.9E-21 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS20150 33ecbba23512046883a508df0c64092e 558 PIRSF PIRSF002111 1 534 3.5E-215 T 22-04-2016 IPR000110 Ribosomal protein S1 GO:0003723|GO:0003735|GO:0005840|GO:0006412 PP4_RS20150 33ecbba23512046883a508df0c64092e 558 SUPERFAMILY SSF50249 342 440 4.18E-23 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS20150 33ecbba23512046883a508df0c64092e 558 Pfam PF00575 S1 RNA binding domain 189 260 2.1E-21 T 22-04-2016 IPR003029 S1 domain GO:0003676 PP4_RS20150 33ecbba23512046883a508df0c64092e 558 Pfam PF00575 S1 RNA binding domain 450 520 1.0E-14 T 22-04-2016 IPR003029 S1 domain GO:0003676 PP4_RS20150 33ecbba23512046883a508df0c64092e 558 Pfam PF00575 S1 RNA binding domain 361 434 2.5E-19 T 22-04-2016 IPR003029 S1 domain GO:0003676 PP4_RS20150 33ecbba23512046883a508df0c64092e 558 Pfam PF00575 S1 RNA binding domain 275 347 2.7E-21 T 22-04-2016 IPR003029 S1 domain GO:0003676 PP4_RS20150 33ecbba23512046883a508df0c64092e 558 Pfam PF00575 S1 RNA binding domain 103 171 2.6E-11 T 22-04-2016 IPR003029 S1 domain GO:0003676 PP4_RS20150 33ecbba23512046883a508df0c64092e 558 Pfam PF00575 S1 RNA binding domain 19 85 8.0E-7 T 22-04-2016 IPR003029 S1 domain GO:0003676 PP4_RS20150 33ecbba23512046883a508df0c64092e 558 SUPERFAMILY SSF50249 189 277 3.73E-27 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS20150 33ecbba23512046883a508df0c64092e 558 SUPERFAMILY SSF50249 429 536 4.1E-22 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS27000 0feb2beeca46c6144aab9212a7fb9dda 460 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 258 273 - T 22-04-2016 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS27000 0feb2beeca46c6144aab9212a7fb9dda 460 SUPERFAMILY SSF54368 13 120 1.96E-14 T 22-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS27000 0feb2beeca46c6144aab9212a7fb9dda 460 Gene3D G3DSA:3.30.590.10 125 445 2.4E-95 T 22-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 PP4_RS27000 0feb2beeca46c6144aab9212a7fb9dda 460 PANTHER PTHR20852:SF7 8 460 1.8E-145 T 22-04-2016 PP4_RS27000 0feb2beeca46c6144aab9212a7fb9dda 460 SMART SM01230 121 378 4.7E-99 T 22-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS27000 0feb2beeca46c6144aab9212a7fb9dda 460 SUPERFAMILY SSF55931 123 458 5.69E-103 T 22-04-2016 PP4_RS27000 0feb2beeca46c6144aab9212a7fb9dda 460 Pfam PF00120 Glutamine synthetase, catalytic domain 122 456 1.5E-107 T 22-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS27000 0feb2beeca46c6144aab9212a7fb9dda 460 PANTHER PTHR20852 8 460 1.8E-145 T 22-04-2016 PP4_RS27000 0feb2beeca46c6144aab9212a7fb9dda 460 Gene3D G3DSA:3.10.20.70 13 124 3.1E-15 T 22-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS02985 34b6ae18f9a6c8c4c15ff402352b7200 432 PANTHER PTHR35093:SF2 7 432 1.5E-69 T 22-04-2016 PP4_RS02985 34b6ae18f9a6c8c4c15ff402352b7200 432 PANTHER PTHR35093 7 432 1.5E-69 T 22-04-2016 PP4_RS02985 34b6ae18f9a6c8c4c15ff402352b7200 432 SUPERFAMILY SSF56935 31 432 2.81E-71 T 22-04-2016 PP4_RS02985 34b6ae18f9a6c8c4c15ff402352b7200 432 Gene3D G3DSA:2.40.160.60 31 432 3.7E-97 T 22-04-2016 PP4_RS02985 34b6ae18f9a6c8c4c15ff402352b7200 432 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 21 420 1.7E-73 T 22-04-2016 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) PP4_RS22380 089783843b9c9f102017fae53701fc87 165 PANTHER PTHR11803 35 165 1.1E-21 T 22-04-2016 IPR006175 YjgF/YER057c/UK114 family PP4_RS22380 089783843b9c9f102017fae53701fc87 165 Gene3D G3DSA:3.30.1330.40 33 165 4.8E-28 T 22-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like PP4_RS22380 089783843b9c9f102017fae53701fc87 165 SUPERFAMILY SSF55298 34 165 1.35E-22 T 22-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like PP4_RS22380 089783843b9c9f102017fae53701fc87 165 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 139 158 - T 22-04-2016 IPR019897 RidA, conserved site PP4_RS22380 089783843b9c9f102017fae53701fc87 165 Pfam PF01042 Endoribonuclease L-PSP 46 163 3.6E-15 T 22-04-2016 IPR006175 YjgF/YER057c/UK114 family PP4_RS26075 dace35124a0b8c0bcd257c1e3c3d9291 341 Pfam PF02687 FtsX-like permease family 214 333 2.3E-8 T 22-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 PP4_RS26075 dace35124a0b8c0bcd257c1e3c3d9291 341 PIRSF PIRSF003097 43 337 1.5E-64 T 22-04-2016 IPR004513 Cell division protein FtsX GO:0007049|GO:0016021 PP4_RS10715 c232e19115d45e618bd8efe3fa9cffa9 532 PANTHER PTHR30047:SF5 5 511 3.2E-259 T 22-04-2016 PP4_RS10715 c232e19115d45e618bd8efe3fa9cffa9 532 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 62 499 4.1E-135 T 22-04-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 PP4_RS10715 c232e19115d45e618bd8efe3fa9cffa9 532 PANTHER PTHR30047 5 511 3.2E-259 T 22-04-2016 PP4_RS10715 c232e19115d45e618bd8efe3fa9cffa9 532 ProSitePatterns PS01303 BCCT family of transporters signature. 312 321 - T 22-04-2016 IPR018093 BCCT transporter, conserved site GO:0005215|GO:0006810|GO:0016020 PP4_RS10715 c232e19115d45e618bd8efe3fa9cffa9 532 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 14 496 4.8E-119 T 22-04-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 PP4_RS01215 f2e386f2d35b24ebedec71be15338c1b 631 SUPERFAMILY SSF55785 90 197 1.27E-28 T 22-04-2016 IPR000014 PAS domain PP4_RS01215 f2e386f2d35b24ebedec71be15338c1b 631 SMART SM00052 381 627 1.5E-111 T 22-04-2016 IPR001633 EAL domain PP4_RS01215 f2e386f2d35b24ebedec71be15338c1b 631 Gene3D G3DSA:3.30.70.270 211 378 8.9E-55 T 22-04-2016 PP4_RS01215 f2e386f2d35b24ebedec71be15338c1b 631 SMART SM00091 85 151 3.7E-9 T 22-04-2016 IPR000014 PAS domain PP4_RS01215 f2e386f2d35b24ebedec71be15338c1b 631 Pfam PF00990 Diguanylate cyclase, GGDEF domain 210 365 9.8E-45 T 22-04-2016 IPR000160 GGDEF domain PP4_RS01215 f2e386f2d35b24ebedec71be15338c1b 631 SUPERFAMILY SSF141868 387 628 8.24E-88 T 22-04-2016 IPR001633 EAL domain PP4_RS01215 f2e386f2d35b24ebedec71be15338c1b 631 Gene3D G3DSA:3.20.20.450 385 628 1.8E-96 T 22-04-2016 IPR001633 EAL domain PP4_RS01215 f2e386f2d35b24ebedec71be15338c1b 631 Pfam PF13426 PAS domain 96 197 1.1E-15 T 22-04-2016 IPR000014 PAS domain PP4_RS01215 f2e386f2d35b24ebedec71be15338c1b 631 PANTHER PTHR10799 1 481 5.2E-83 T 22-04-2016 PP4_RS01215 f2e386f2d35b24ebedec71be15338c1b 631 PANTHER PTHR10799:SF710 1 481 5.2E-83 T 22-04-2016 PP4_RS01215 f2e386f2d35b24ebedec71be15338c1b 631 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 207 368 1.6E-35 T 22-04-2016 IPR000160 GGDEF domain PP4_RS01215 f2e386f2d35b24ebedec71be15338c1b 631 SUPERFAMILY SSF55073 215 373 1.02E-47 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS01215 f2e386f2d35b24ebedec71be15338c1b 631 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 81 206 1.6E-19 T 22-04-2016 IPR000014 PAS domain PP4_RS01215 f2e386f2d35b24ebedec71be15338c1b 631 Gene3D G3DSA:3.30.450.20 81 193 1.0E-27 T 22-04-2016 PP4_RS01215 f2e386f2d35b24ebedec71be15338c1b 631 SMART SM00267 199 371 2.4E-61 T 22-04-2016 IPR000160 GGDEF domain PP4_RS01215 f2e386f2d35b24ebedec71be15338c1b 631 Pfam PF00563 EAL domain 388 622 1.6E-73 T 22-04-2016 IPR001633 EAL domain PP4_RS03165 35fa8bb1a93f415b0be96cbf44aeccb1 689 SUPERFAMILY SSF55781 67 204 4.41E-11 T 22-04-2016 IPR029016 GAF domain-like PP4_RS03165 35fa8bb1a93f415b0be96cbf44aeccb1 689 Gene3D G3DSA:3.30.450.20 232 285 5.0E-6 T 22-04-2016 PP4_RS03165 35fa8bb1a93f415b0be96cbf44aeccb1 689 PANTHER PTHR32071 616 689 5.6E-137 T 22-04-2016 PP4_RS03165 35fa8bb1a93f415b0be96cbf44aeccb1 689 PANTHER PTHR32071 290 578 5.6E-137 T 22-04-2016 PP4_RS03165 35fa8bb1a93f415b0be96cbf44aeccb1 689 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 649 666 1.59614E-7 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS03165 35fa8bb1a93f415b0be96cbf44aeccb1 689 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 666 686 1.59614E-7 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS03165 35fa8bb1a93f415b0be96cbf44aeccb1 689 SUPERFAMILY SSF52540 335 571 3.84E-55 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03165 35fa8bb1a93f415b0be96cbf44aeccb1 689 Gene3D G3DSA:1.10.8.60 506 573 7.5E-14 T 22-04-2016 PP4_RS03165 35fa8bb1a93f415b0be96cbf44aeccb1 689 SUPERFAMILY SSF46689 630 685 1.7E-12 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS03165 35fa8bb1a93f415b0be96cbf44aeccb1 689 Pfam PF13426 PAS domain 239 314 5.0E-6 T 22-04-2016 IPR000014 PAS domain PP4_RS03165 35fa8bb1a93f415b0be96cbf44aeccb1 689 Gene3D G3DSA:3.40.50.300 336 503 6.0E-49 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03165 35fa8bb1a93f415b0be96cbf44aeccb1 689 Pfam PF02954 Bacterial regulatory protein, Fis family 643 683 4.1E-14 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS03165 35fa8bb1a93f415b0be96cbf44aeccb1 689 PANTHER PTHR32071:SF5 616 689 5.6E-137 T 22-04-2016 PP4_RS03165 35fa8bb1a93f415b0be96cbf44aeccb1 689 PANTHER PTHR32071:SF5 290 578 5.6E-137 T 22-04-2016 PP4_RS03165 35fa8bb1a93f415b0be96cbf44aeccb1 689 Pfam PF00158 Sigma-54 interaction domain 335 497 1.3E-59 T 22-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 PP4_RS03165 35fa8bb1a93f415b0be96cbf44aeccb1 689 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 418 433 - T 22-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PP4_RS03165 35fa8bb1a93f415b0be96cbf44aeccb1 689 SMART SM00382 351 494 2.1E-9 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS03165 35fa8bb1a93f415b0be96cbf44aeccb1 689 Gene3D G3DSA:1.10.10.60 634 685 2.3E-15 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS03165 35fa8bb1a93f415b0be96cbf44aeccb1 689 SUPERFAMILY SSF55785 233 286 1.5E-7 T 22-04-2016 IPR000014 PAS domain PP4_RS03745 6633b9a2fdff967d66eb9b14c59326c8 142 Pfam PF13426 PAS domain 16 120 5.5E-21 T 22-04-2016 IPR000014 PAS domain PP4_RS03745 6633b9a2fdff967d66eb9b14c59326c8 142 SMART SM00086 80 122 4.3E-8 T 22-04-2016 IPR001610 PAC motif PP4_RS03745 6633b9a2fdff967d66eb9b14c59326c8 142 PANTHER PTHR24351 31 120 4.8E-28 T 22-04-2016 PP4_RS03745 6633b9a2fdff967d66eb9b14c59326c8 142 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 5 129 4.3E-24 T 22-04-2016 IPR000014 PAS domain PP4_RS03745 6633b9a2fdff967d66eb9b14c59326c8 142 SMART SM00091 5 74 6.0E-6 T 22-04-2016 IPR000014 PAS domain PP4_RS03745 6633b9a2fdff967d66eb9b14c59326c8 142 Gene3D G3DSA:3.30.450.20 16 121 6.4E-32 T 22-04-2016 PP4_RS03745 6633b9a2fdff967d66eb9b14c59326c8 142 SUPERFAMILY SSF55785 12 121 6.11E-27 T 22-04-2016 IPR000014 PAS domain PP4_RS22645 5952d5ebc787abd96f2a28077b1dfa10 320 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 136 156 - T 22-04-2016 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 PP4_RS22645 5952d5ebc787abd96f2a28077b1dfa10 320 PANTHER PTHR22912:SF48 1 313 4.7E-163 T 22-04-2016 PP4_RS22645 5952d5ebc787abd96f2a28077b1dfa10 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 199 215 1.3E-77 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PP4_RS22645 5952d5ebc787abd96f2a28077b1dfa10 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 129 141 1.3E-77 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PP4_RS22645 5952d5ebc787abd96f2a28077b1dfa10 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 144 168 1.3E-77 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PP4_RS22645 5952d5ebc787abd96f2a28077b1dfa10 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 8 30 1.3E-77 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PP4_RS22645 5952d5ebc787abd96f2a28077b1dfa10 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 62 72 1.3E-77 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PP4_RS22645 5952d5ebc787abd96f2a28077b1dfa10 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 41 56 1.3E-77 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PP4_RS22645 5952d5ebc787abd96f2a28077b1dfa10 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 237 258 1.3E-77 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PP4_RS22645 5952d5ebc787abd96f2a28077b1dfa10 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 275 293 1.3E-77 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PP4_RS22645 5952d5ebc787abd96f2a28077b1dfa10 320 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 107 115 1.3E-77 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PP4_RS22645 5952d5ebc787abd96f2a28077b1dfa10 320 Gene3D G3DSA:3.50.50.60 120 232 1.5E-34 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS22645 5952d5ebc787abd96f2a28077b1dfa10 320 Gene3D G3DSA:3.50.50.60 5 119 4.2E-37 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS22645 5952d5ebc787abd96f2a28077b1dfa10 320 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 8 312 3.9E-121 T 22-04-2016 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00240+1.8.1.9|KEGG: 00450+1.8.1.9 PP4_RS22645 5952d5ebc787abd96f2a28077b1dfa10 320 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 8 300 1.2E-54 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS22645 5952d5ebc787abd96f2a28077b1dfa10 320 SUPERFAMILY SSF51905 2 313 1.54E-56 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS22645 5952d5ebc787abd96f2a28077b1dfa10 320 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 148 166 3.3E-41 T 22-04-2016 PP4_RS22645 5952d5ebc787abd96f2a28077b1dfa10 320 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 106 124 3.3E-41 T 22-04-2016 PP4_RS22645 5952d5ebc787abd96f2a28077b1dfa10 320 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 235 251 3.3E-41 T 22-04-2016 PP4_RS22645 5952d5ebc787abd96f2a28077b1dfa10 320 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 265 287 3.3E-41 T 22-04-2016 PP4_RS22645 5952d5ebc787abd96f2a28077b1dfa10 320 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 3.3E-41 T 22-04-2016 PP4_RS22645 5952d5ebc787abd96f2a28077b1dfa10 320 Gene3D G3DSA:3.50.50.60 233 314 2.2E-11 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS22645 5952d5ebc787abd96f2a28077b1dfa10 320 PANTHER PTHR22912 1 313 4.7E-163 T 22-04-2016 PP4_RS21825 ea63b4d57af0bf74ed1b1731f49b16d4 93 PRINTS PR01727 Prokaryotic integration host factor signature 76 90 3.6E-10 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PP4_RS21825 ea63b4d57af0bf74ed1b1731f49b16d4 93 PRINTS PR01727 Prokaryotic integration host factor signature 42 57 3.6E-10 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PP4_RS21825 ea63b4d57af0bf74ed1b1731f49b16d4 93 PRINTS PR01727 Prokaryotic integration host factor signature 60 73 3.6E-10 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PP4_RS21825 ea63b4d57af0bf74ed1b1731f49b16d4 93 Pfam PF00216 Bacterial DNA-binding protein 3 92 2.4E-27 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PP4_RS21825 ea63b4d57af0bf74ed1b1731f49b16d4 93 Gene3D G3DSA:4.10.520.10 2 93 8.6E-29 T 22-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 PP4_RS21825 ea63b4d57af0bf74ed1b1731f49b16d4 93 SMART SM00411 3 92 1.0E-25 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PP4_RS21825 ea63b4d57af0bf74ed1b1731f49b16d4 93 SUPERFAMILY SSF47729 3 92 4.12E-26 T 22-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 PP4_RS21825 ea63b4d57af0bf74ed1b1731f49b16d4 93 PANTHER PTHR33175 2 92 9.6E-32 T 22-04-2016 PP4_RS05455 307da2a3c1cc5b3ef518408249dafb34 391 PANTHER PTHR30341 1 389 2.3E-175 T 22-04-2016 PP4_RS05455 307da2a3c1cc5b3ef518408249dafb34 391 Hamap MF_01844 Na(+)/H(+) antiporter NhaA [nhaA]. 5 387 23.73 T 22-04-2016 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 PP4_RS05455 307da2a3c1cc5b3ef518408249dafb34 391 TIGRFAM TIGR00773 NhaA: Na+/H+ antiporter NhaA 8 380 4.3E-155 T 22-04-2016 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 PP4_RS05455 307da2a3c1cc5b3ef518408249dafb34 391 Gene3D G3DSA:1.20.1530.10 5 387 2.5E-154 T 22-04-2016 IPR023171 Na/H antiporter domain PP4_RS05455 307da2a3c1cc5b3ef518408249dafb34 391 PANTHER PTHR30341:SF0 1 389 2.3E-175 T 22-04-2016 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 PP4_RS05455 307da2a3c1cc5b3ef518408249dafb34 391 Pfam PF06965 Na+/H+ antiporter 1 7 380 3.0E-149 T 22-04-2016 IPR004670 Na+/H+ antiporter NhaA GO:0006814|GO:0006885|GO:0016021 PP4_RS21710 cd88bdb8dd1e2f66fb50b9cbde58cca6 197 Gene3D G3DSA:1.20.910.10 3 188 5.8E-71 T 22-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 PP4_RS21710 cd88bdb8dd1e2f66fb50b9cbde58cca6 197 SUPERFAMILY SSF48613 8 190 3.18E-54 T 22-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 PP4_RS21710 cd88bdb8dd1e2f66fb50b9cbde58cca6 197 Pfam PF01126 Heme oxygenase 9 187 1.4E-18 T 22-04-2016 IPR016053 Haem oxygenase-like GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: REACT_9431 PP4_RS06860 d3e62fb6220c9e5746555a8096d93d62 335 PANTHER PTHR15162 1 327 7.3E-74 T 22-04-2016 PP4_RS06860 d3e62fb6220c9e5746555a8096d93d62 335 Hamap MF_00767 Succinylglutamate desuccinylase [astE]. 1 335 157.09 T 22-04-2016 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96|UniPathway: UPA00185 PP4_RS06860 d3e62fb6220c9e5746555a8096d93d62 335 Gene3D G3DSA:3.40.630.10 52 235 2.3E-12 T 22-04-2016 PP4_RS06860 d3e62fb6220c9e5746555a8096d93d62 335 SUPERFAMILY SSF53187 6 328 7.61E-73 T 22-04-2016 PP4_RS06860 d3e62fb6220c9e5746555a8096d93d62 335 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 49 328 1.0E-73 T 22-04-2016 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0008152|GO:0016788 PP4_RS06860 d3e62fb6220c9e5746555a8096d93d62 335 TIGRFAM TIGR03242 arg_catab_astE: succinylglutamate desuccinylase 6 327 7.3E-130 T 22-04-2016 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96|UniPathway: UPA00185 PP4_RS06860 d3e62fb6220c9e5746555a8096d93d62 335 PIRSF PIRSF017020 1 334 4.0E-116 T 22-04-2016 IPR016681 Succinylglutamate desuccinylase GO:0008270|GO:0009017|GO:0019544|GO:0019545 KEGG: 00330+3.5.1.96|UniPathway: UPA00185 PP4_RS14690 c084b69d10d6802ed99b86562e79e65a 460 Gene3D G3DSA:1.20.120.640 306 391 1.6E-23 T 22-04-2016 PP4_RS14690 c084b69d10d6802ed99b86562e79e65a 460 SUPERFAMILY SSF47323 316 458 1.24E-37 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS14690 c084b69d10d6802ed99b86562e79e65a 460 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 2 458 38.52 T 22-04-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16|Reactome: REACT_71 PP4_RS14690 c084b69d10d6802ed99b86562e79e65a 460 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 25 36 1.7E-30 T 22-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 PP4_RS14690 c084b69d10d6802ed99b86562e79e65a 460 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 61 70 1.7E-30 T 22-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 PP4_RS14690 c084b69d10d6802ed99b86562e79e65a 460 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 222 243 1.7E-30 T 22-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 PP4_RS14690 c084b69d10d6802ed99b86562e79e65a 460 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 191 209 1.7E-30 T 22-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 PP4_RS14690 c084b69d10d6802ed99b86562e79e65a 460 PANTHER PTHR10890 2 460 8.8E-246 T 22-04-2016 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 PP4_RS14690 c084b69d10d6802ed99b86562e79e65a 460 SUPERFAMILY SSF52374 3 313 5.63E-101 T 22-04-2016 PP4_RS14690 c084b69d10d6802ed99b86562e79e65a 460 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 2 457 1.7E-174 T 22-04-2016 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16|Reactome: REACT_71 PP4_RS14690 c084b69d10d6802ed99b86562e79e65a 460 Pfam PF09190 DALR domain 340 401 6.1E-21 T 22-04-2016 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 PP4_RS14690 c084b69d10d6802ed99b86562e79e65a 460 SMART SM00840 340 401 1.4E-24 T 22-04-2016 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 PP4_RS14690 c084b69d10d6802ed99b86562e79e65a 460 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 15 313 1.1E-134 T 22-04-2016 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 PP4_RS14690 c084b69d10d6802ed99b86562e79e65a 460 Gene3D G3DSA:3.40.50.620 19 305 2.2E-110 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS12945 fb6373912891ef2eebf30228933b8011 316 Pfam PF00589 Phage integrase family 135 297 2.6E-11 T 22-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 PP4_RS12945 fb6373912891ef2eebf30228933b8011 316 SUPERFAMILY SSF47823 7 99 1.96E-27 T 22-04-2016 IPR010998 Integrase, Lambda-type, N-terminal PP4_RS12945 fb6373912891ef2eebf30228933b8011 316 Gene3D G3DSA:1.10.443.10 100 298 3.7E-53 T 22-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 PP4_RS12945 fb6373912891ef2eebf30228933b8011 316 Gene3D G3DSA:1.10.150.130 7 99 4.6E-29 T 22-04-2016 IPR023109 Integrase/recombinase, N-terminal PP4_RS12945 fb6373912891ef2eebf30228933b8011 316 SUPERFAMILY SSF56349 118 299 2.94E-38 T 22-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 PP4_RS21310 83a132f637acdbc7d9727f792202560f 474 PANTHER PTHR11699:SF109 1 474 2.6E-285 T 22-04-2016 IPR015657 Aminobutyraldehyde dehydrogenase KEGG: 00330+1.2.1.19|KEGG: 00410+1.2.1.19|MetaCyc: PWY-2|MetaCyc: PWY-3|UniPathway: UPA00188 PP4_RS21310 83a132f637acdbc7d9727f792202560f 474 Gene3D G3DSA:3.40.605.10 2 258 5.3E-95 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS21310 83a132f637acdbc7d9727f792202560f 474 Pfam PF00171 Aldehyde dehydrogenase family 18 470 3.8E-166 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PP4_RS21310 83a132f637acdbc7d9727f792202560f 474 PANTHER PTHR11699 1 474 2.6E-285 T 22-04-2016 PP4_RS21310 83a132f637acdbc7d9727f792202560f 474 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 245 252 - T 22-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 PP4_RS21310 83a132f637acdbc7d9727f792202560f 474 Gene3D G3DSA:3.40.309.10 259 445 5.2E-63 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PP4_RS21310 83a132f637acdbc7d9727f792202560f 474 SUPERFAMILY SSF53720 2 473 2.09E-161 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS26410 0d47914549fb0b3ccc0bcaa797e988c3 272 TIGRFAM TIGR02139 permease_CysT: sulfate ABC transporter, permease protein CysT 8 270 6.8E-130 T 22-04-2016 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 PP4_RS26410 0d47914549fb0b3ccc0bcaa797e988c3 272 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 75 270 3.8E-24 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS26410 0d47914549fb0b3ccc0bcaa797e988c3 272 Gene3D G3DSA:1.10.3720.10 19 269 1.5E-52 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS26410 0d47914549fb0b3ccc0bcaa797e988c3 272 TIGRFAM TIGR00969 3a0106s02: sulfate ABC transporter, permease protein 10 268 1.7E-94 T 22-04-2016 IPR005667 Sulphate ABC transporter permease protein 2 GO:0008272|GO:0015419|GO:0016020 PP4_RS26410 0d47914549fb0b3ccc0bcaa797e988c3 272 SUPERFAMILY SSF161098 15 267 2.06E-56 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS26410 0d47914549fb0b3ccc0bcaa797e988c3 272 PANTHER PTHR30406 1 270 9.0E-161 T 22-04-2016 PP4_RS26410 0d47914549fb0b3ccc0bcaa797e988c3 272 PANTHER PTHR30406:SF6 1 270 9.0E-161 T 22-04-2016 IPR011865 Sulphate ABC transporter, permease protein CysT GO:0008272|GO:0015116|GO:0016021 PP4_RS10375 c0b017c7f1b9d54d06d8955c580b4029 411 Gene3D G3DSA:1.10.1060.10 16 104 1.2E-21 T 22-04-2016 PP4_RS10375 c0b017c7f1b9d54d06d8955c580b4029 411 Pfam PF12838 4Fe-4S dicluster domain 24 89 2.0E-12 T 22-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PP4_RS10375 c0b017c7f1b9d54d06d8955c580b4029 411 SUPERFAMILY SSF54862 21 124 8.37E-21 T 22-04-2016 PP4_RS10375 c0b017c7f1b9d54d06d8955c580b4029 411 Pfam PF02754 Cysteine-rich domain 170 254 2.5E-12 T 22-04-2016 IPR004017 Cysteine-rich domain PP4_RS10375 c0b017c7f1b9d54d06d8955c580b4029 411 Pfam PF02754 Cysteine-rich domain 303 386 2.9E-12 T 22-04-2016 IPR004017 Cysteine-rich domain PP4_RS10375 c0b017c7f1b9d54d06d8955c580b4029 411 PIRSF PIRSF000139 5 409 4.9E-122 T 22-04-2016 IPR012257 Glycolate oxidase, iron-sulphur subunit PP4_RS10375 c0b017c7f1b9d54d06d8955c580b4029 411 PANTHER PTHR32479:SF2 14 404 9.9E-127 T 22-04-2016 PP4_RS10375 c0b017c7f1b9d54d06d8955c580b4029 411 PANTHER PTHR32479 14 404 9.9E-127 T 22-04-2016 PP4_RS10375 c0b017c7f1b9d54d06d8955c580b4029 411 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 25 36 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PP4_RS10375 c0b017c7f1b9d54d06d8955c580b4029 411 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 75 86 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PP4_RS15210 9b01e75afa2cd873ed3613c6c649ea9f 271 PANTHER PTHR10992 1 264 8.7E-96 T 22-04-2016 PP4_RS15210 9b01e75afa2cd873ed3613c6c649ea9f 271 Gene3D G3DSA:3.40.50.1820 6 263 1.0E-59 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS15210 9b01e75afa2cd873ed3613c6c649ea9f 271 PRINTS PR00111 Alpha/beta hydrolase fold signature 42 57 1.3E-6 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS15210 9b01e75afa2cd873ed3613c6c649ea9f 271 PRINTS PR00111 Alpha/beta hydrolase fold signature 104 117 1.3E-6 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS15210 9b01e75afa2cd873ed3613c6c649ea9f 271 PRINTS PR00111 Alpha/beta hydrolase fold signature 208 222 1.3E-6 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS15210 9b01e75afa2cd873ed3613c6c649ea9f 271 SUPERFAMILY SSF53474 6 263 7.67E-54 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS15210 9b01e75afa2cd873ed3613c6c649ea9f 271 Pfam PF12697 Alpha/beta hydrolase family 19 257 6.6E-22 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS15210 9b01e75afa2cd873ed3613c6c649ea9f 271 PANTHER PTHR10992:SF892 1 264 8.7E-96 T 22-04-2016 PP4_RS07695 5be586a187e3f56ff0e7dff38709c81b 460 PANTHER PTHR13932 1 455 4.2E-233 T 22-04-2016 PP4_RS07695 5be586a187e3f56ff0e7dff38709c81b 460 PIRSF PIRSF000167 6 459 4.6E-170 T 22-04-2016 IPR004558 Coproporphyrinogen III oxidase, oxygen-independent, HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.99.22|UniPathway: UPA00251 PP4_RS07695 5be586a187e3f56ff0e7dff38709c81b 460 SMART SM00729 53 276 2.7E-48 T 22-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 PP4_RS07695 5be586a187e3f56ff0e7dff38709c81b 460 Gene3D G3DSA:3.80.30.20 54 286 4.7E-28 T 22-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe PP4_RS07695 5be586a187e3f56ff0e7dff38709c81b 460 Pfam PF06969 HemN C-terminal domain 368 435 5.0E-12 T 22-04-2016 IPR010723 HemN, C-terminal PP4_RS07695 5be586a187e3f56ff0e7dff38709c81b 460 SUPERFAMILY SSF102114 7 448 5.23E-133 T 22-04-2016 PP4_RS07695 5be586a187e3f56ff0e7dff38709c81b 460 TIGRFAM TIGR00538 hemN: oxygen-independent coproporphyrinogen III oxidase 6 460 4.7E-175 T 22-04-2016 IPR004558 Coproporphyrinogen III oxidase, oxygen-independent, HemN GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00860+1.3.99.22|UniPathway: UPA00251 PP4_RS07695 5be586a187e3f56ff0e7dff38709c81b 460 PANTHER PTHR13932:SF6 1 455 4.2E-233 T 22-04-2016 PP4_RS07695 5be586a187e3f56ff0e7dff38709c81b 460 Pfam PF04055 Radical SAM superfamily 58 232 3.0E-17 T 22-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 PP4_RS10105 c9beff6957ef34d1af2d8bebf64d70a4 245 PANTHER PTHR24322 147 179 1.6E-39 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS10105 c9beff6957ef34d1af2d8bebf64d70a4 245 PANTHER PTHR24322 6 131 1.6E-39 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS10105 c9beff6957ef34d1af2d8bebf64d70a4 245 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 134 162 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PP4_RS10105 c9beff6957ef34d1af2d8bebf64d70a4 245 Pfam PF00106 short chain dehydrogenase 6 187 3.1E-38 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS10105 c9beff6957ef34d1af2d8bebf64d70a4 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 2.9E-17 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS10105 c9beff6957ef34d1af2d8bebf64d70a4 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 2.9E-17 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS10105 c9beff6957ef34d1af2d8bebf64d70a4 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 168 185 2.9E-17 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS10105 c9beff6957ef34d1af2d8bebf64d70a4 245 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 147 166 2.9E-17 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS10105 c9beff6957ef34d1af2d8bebf64d70a4 245 SUPERFAMILY SSF51735 4 240 3.06E-56 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS10105 c9beff6957ef34d1af2d8bebf64d70a4 245 Gene3D G3DSA:3.40.50.720 5 217 5.1E-52 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS00295 fb6db8f1403a8e44e305866dbbac9147 168 PANTHER PTHR10458:SF10 1 168 1.2E-97 T 22-04-2016 PP4_RS00295 fb6db8f1403a8e44e305866dbbac9147 168 SUPERFAMILY SSF56420 2 165 9.42E-64 T 22-04-2016 IPR023635 Peptide deformylase PP4_RS00295 fb6db8f1403a8e44e305866dbbac9147 168 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 4 161 3.6E-56 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 PP4_RS00295 fb6db8f1403a8e44e305866dbbac9147 168 PRINTS PR01576 Peptide deformylase signature 102 120 3.13E-39 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 PP4_RS00295 fb6db8f1403a8e44e305866dbbac9147 168 PRINTS PR01576 Peptide deformylase signature 121 150 3.13E-39 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 PP4_RS00295 fb6db8f1403a8e44e305866dbbac9147 168 PRINTS PR01576 Peptide deformylase signature 33 62 3.13E-39 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 PP4_RS00295 fb6db8f1403a8e44e305866dbbac9147 168 PRINTS PR01576 Peptide deformylase signature 90 101 3.13E-39 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 PP4_RS00295 fb6db8f1403a8e44e305866dbbac9147 168 PIRSF PIRSF004749 1 168 5.6E-59 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 PP4_RS00295 fb6db8f1403a8e44e305866dbbac9147 168 Hamap MF_00163 Peptide deformylase [def]. 2 163 31.901 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 PP4_RS00295 fb6db8f1403a8e44e305866dbbac9147 168 Pfam PF01327 Polypeptide deformylase 4 153 3.3E-52 T 22-04-2016 IPR023635 Peptide deformylase PP4_RS00295 fb6db8f1403a8e44e305866dbbac9147 168 PANTHER PTHR10458 1 168 1.2E-97 T 22-04-2016 IPR000181 Formylmethionine deformylase GO:0005506|GO:0042586 PP4_RS00295 fb6db8f1403a8e44e305866dbbac9147 168 Gene3D G3DSA:3.90.45.10 5 166 9.1E-68 T 22-04-2016 IPR023635 Peptide deformylase PP4_RS21750 886d6e866bb95c98ad557c9bc199990f 502 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 407 416 - T 22-04-2016 IPR025944 Sigma-54 interaction domain, conserved site PP4_RS21750 886d6e866bb95c98ad557c9bc199990f 502 Gene3D G3DSA:3.30.450.20 77 151 8.9E-7 T 22-04-2016 PP4_RS21750 886d6e866bb95c98ad557c9bc199990f 502 SUPERFAMILY SSF46689 449 498 8.36E-7 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS21750 886d6e866bb95c98ad557c9bc199990f 502 PANTHER PTHR32071 1 498 3.4E-184 T 22-04-2016 PP4_RS21750 886d6e866bb95c98ad557c9bc199990f 502 SUPERFAMILY SSF52540 194 435 4.09E-67 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS21750 886d6e866bb95c98ad557c9bc199990f 502 Pfam PF00158 Sigma-54 interaction domain 193 360 5.4E-65 T 22-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 PP4_RS21750 886d6e866bb95c98ad557c9bc199990f 502 PANTHER PTHR32071:SF3 1 498 3.4E-184 T 22-04-2016 PP4_RS21750 886d6e866bb95c98ad557c9bc199990f 502 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 217 230 - T 22-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 PP4_RS21750 886d6e866bb95c98ad557c9bc199990f 502 Gene3D G3DSA:3.40.50.300 190 366 2.0E-56 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS21750 886d6e866bb95c98ad557c9bc199990f 502 Gene3D G3DSA:1.10.8.60 367 436 7.6E-22 T 22-04-2016 PP4_RS21750 886d6e866bb95c98ad557c9bc199990f 502 SMART SM00382 213 358 4.8E-9 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS21750 886d6e866bb95c98ad557c9bc199990f 502 SUPERFAMILY SSF55785 81 165 2.13E-5 T 22-04-2016 IPR000014 PAS domain PP4_RS21750 886d6e866bb95c98ad557c9bc199990f 502 Pfam PF13188 PAS domain 81 127 1.3E-4 T 22-04-2016 IPR000014 PAS domain PP4_RS21750 886d6e866bb95c98ad557c9bc199990f 502 Gene3D G3DSA:1.10.10.60 443 498 3.6E-21 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS21750 886d6e866bb95c98ad557c9bc199990f 502 TIGRFAM TIGR04381 HTH_TypR: TyrR family helix-turn-helix domain 452 498 8.9E-26 T 22-04-2016 IPR030828 TyrR family, helix-turn-helix domain GO:0003677 PP4_RS19610 de8d25c80ff6efa3e84546cfdba32d83 815 SUPERFAMILY SSF56645 124 358 3.66E-46 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 PP4_RS19610 de8d25c80ff6efa3e84546cfdba32d83 815 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 363 508 8.4E-15 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS19610 de8d25c80ff6efa3e84546cfdba32d83 815 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 240 337 4.6E-9 T 22-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 PP4_RS19610 de8d25c80ff6efa3e84546cfdba32d83 815 Gene3D G3DSA:1.10.540.10 99 237 1.8E-31 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS19610 de8d25c80ff6efa3e84546cfdba32d83 815 PANTHER PTHR10909 53 536 3.5E-237 T 22-04-2016 PP4_RS19610 de8d25c80ff6efa3e84546cfdba32d83 815 Pfam PF09317 Domain of unknown function (DUF1974) 517 802 1.5E-101 T 22-04-2016 IPR015396 Acyl-CoA dehydrogenase, C-termina, bacterial type GO:0003995|GO:0033539|GO:0055114 KEGG: 00071+1.3.99.-|KEGG: 00280+1.3.99.-|KEGG: 00281+1.3.99.-|KEGG: 00362+1.3.99.-|KEGG: 00626+1.3.99.-|KEGG: 00930+1.3.99.-|UniPathway: UPA00659 PP4_RS19610 de8d25c80ff6efa3e84546cfdba32d83 815 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 143 236 1.4E-17 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS19610 de8d25c80ff6efa3e84546cfdba32d83 815 Gene3D G3DSA:2.40.110.10 240 352 1.9E-16 T 22-04-2016 PP4_RS19610 de8d25c80ff6efa3e84546cfdba32d83 815 SUPERFAMILY SSF47203 363 513 1.06E-28 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS19610 de8d25c80ff6efa3e84546cfdba32d83 815 Gene3D G3DSA:1.20.140.10 353 509 1.4E-28 T 22-04-2016 PP4_RS19610 de8d25c80ff6efa3e84546cfdba32d83 815 PANTHER PTHR10909:SF283 53 536 3.5E-237 T 22-04-2016 PP4_RS10810 3d08b2820fd1a53fef61ca6dbad604f1 437 Pfam PF13091 PLD-like domain 243 380 4.4E-19 T 22-04-2016 IPR025202 Phospholipase D-like domain PP4_RS10810 3d08b2820fd1a53fef61ca6dbad604f1 437 SUPERFAMILY SSF56024 12 192 3.45E-26 T 22-04-2016 PP4_RS10810 3d08b2820fd1a53fef61ca6dbad604f1 437 PANTHER PTHR12586 1 436 4.8E-162 T 22-04-2016 IPR016270 Phospholipase D, phosphatidylserine synthase type GO:0008654|GO:0016780 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 PP4_RS10810 3d08b2820fd1a53fef61ca6dbad604f1 437 SMART SM00155 120 146 0.17 T 22-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 PP4_RS10810 3d08b2820fd1a53fef61ca6dbad604f1 437 SMART SM00155 338 365 3.6 T 22-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 PP4_RS10810 3d08b2820fd1a53fef61ca6dbad604f1 437 SUPERFAMILY SSF56024 235 379 2.28E-23 T 22-04-2016 PP4_RS10810 3d08b2820fd1a53fef61ca6dbad604f1 437 Gene3D G3DSA:3.30.870.10 235 380 2.5E-18 T 22-04-2016 PP4_RS10810 3d08b2820fd1a53fef61ca6dbad604f1 437 Gene3D G3DSA:3.30.870.10 13 181 6.6E-16 T 22-04-2016 PP4_RS10810 3d08b2820fd1a53fef61ca6dbad604f1 437 PANTHER PTHR12586:SF3 1 436 4.8E-162 T 22-04-2016 PP4_RS10810 3d08b2820fd1a53fef61ca6dbad604f1 437 PIRSF PIRSF000850 1 437 8.9E-157 T 22-04-2016 IPR016270 Phospholipase D, phosphatidylserine synthase type GO:0008654|GO:0016780 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 PP4_RS04160 7bb4c5a5b1929429626687dd5574378d 305 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 28 260 2.2E-66 T 22-04-2016 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 PP4_RS04160 7bb4c5a5b1929429626687dd5574378d 305 Gene3D G3DSA:3.40.50.620 247 256 1.8E-63 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS04160 7bb4c5a5b1929429626687dd5574378d 305 Gene3D G3DSA:3.40.50.620 5 209 1.8E-63 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS04160 7bb4c5a5b1929429626687dd5574378d 305 PANTHER PTHR23293 248 305 7.3E-97 T 22-04-2016 PP4_RS04160 7bb4c5a5b1929429626687dd5574378d 305 PANTHER PTHR23293 177 210 7.3E-97 T 22-04-2016 PP4_RS04160 7bb4c5a5b1929429626687dd5574378d 305 PANTHER PTHR23293 1 157 7.3E-97 T 22-04-2016 PP4_RS04160 7bb4c5a5b1929429626687dd5574378d 305 TIGRFAM TIGR02039 CysD: sulfate adenylyltransferase, small subunit 8 305 7.2E-158 T 22-04-2016 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 PP4_RS04160 7bb4c5a5b1929429626687dd5574378d 305 PIRSF PIRSF002936 1 305 5.0E-155 T 22-04-2016 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 PP4_RS04160 7bb4c5a5b1929429626687dd5574378d 305 PANTHER PTHR23293:SF6 248 305 7.3E-97 T 22-04-2016 PP4_RS04160 7bb4c5a5b1929429626687dd5574378d 305 PANTHER PTHR23293:SF6 177 210 7.3E-97 T 22-04-2016 PP4_RS04160 7bb4c5a5b1929429626687dd5574378d 305 PANTHER PTHR23293:SF6 1 157 7.3E-97 T 22-04-2016 PP4_RS04160 7bb4c5a5b1929429626687dd5574378d 305 Hamap MF_00064 Sulfate adenylyltransferase subunit 2 [cysD]. 3 305 56.317 T 22-04-2016 IPR011784 Sulphate adenylyltransferase, small subunit GO:0004781|GO:0019419 KEGG: 00230+2.7.7.4|KEGG: 00261+2.7.7.4|KEGG: 00450+2.7.7.4|KEGG: 00920+2.7.7.4|MetaCyc: PWY-5278|MetaCyc: PWY-5340|MetaCyc: PWY-6683|MetaCyc: PWY-6932|UniPathway: UPA00140 PP4_RS04160 7bb4c5a5b1929429626687dd5574378d 305 SUPERFAMILY SSF52402 5 209 2.56E-77 T 22-04-2016 PP4_RS26785 d18805077c9b09297f1f582859a58cde 303 PANTHER PTHR30537:SF29 1 298 6.9E-134 T 22-04-2016 PP4_RS26785 d18805077c9b09297f1f582859a58cde 303 Gene3D G3DSA:3.40.190.10 180 265 4.7E-19 T 22-04-2016 PP4_RS26785 d18805077c9b09297f1f582859a58cde 303 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 1.8E-16 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS26785 d18805077c9b09297f1f582859a58cde 303 Pfam PF03466 LysR substrate binding domain 88 297 1.2E-37 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS26785 d18805077c9b09297f1f582859a58cde 303 SUPERFAMILY SSF53850 89 298 1.81E-38 T 22-04-2016 PP4_RS26785 d18805077c9b09297f1f582859a58cde 303 Gene3D G3DSA:3.40.190.10 93 179 7.2E-15 T 22-04-2016 PP4_RS26785 d18805077c9b09297f1f582859a58cde 303 SUPERFAMILY SSF46785 3 86 4.72E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS26785 d18805077c9b09297f1f582859a58cde 303 PANTHER PTHR30537 1 298 6.9E-134 T 22-04-2016 PP4_RS26785 d18805077c9b09297f1f582859a58cde 303 Gene3D G3DSA:1.10.10.10 3 86 1.5E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS26350 aec486654fb56654e34c522720b0f192 290 Gene3D G3DSA:3.40.190.10 156 228 3.6E-21 T 22-04-2016 PP4_RS26350 aec486654fb56654e34c522720b0f192 290 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 50 268 2.7E-52 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS26350 aec486654fb56654e34c522720b0f192 290 SUPERFAMILY SSF53850 16 269 1.79E-62 T 22-04-2016 PP4_RS26350 aec486654fb56654e34c522720b0f192 290 PANTHER PTHR18966:SF191 45 266 1.9E-48 T 22-04-2016 PP4_RS26350 aec486654fb56654e34c522720b0f192 290 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 72 85 - T 22-04-2016 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 PP4_RS26350 aec486654fb56654e34c522720b0f192 290 PANTHER PTHR18966 45 266 1.9E-48 T 22-04-2016 PP4_RS26350 aec486654fb56654e34c522720b0f192 290 Gene3D G3DSA:3.40.190.10 16 155 5.7E-39 T 22-04-2016 PP4_RS26350 aec486654fb56654e34c522720b0f192 290 SMART SM00062 49 271 5.1E-73 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS26875 100d46294e36b67cc0fb79a3c70b3484 434 SUPERFAMILY SSF51905 1 54 9.71E-53 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS26875 100d46294e36b67cc0fb79a3c70b3484 434 SUPERFAMILY SSF51905 360 417 9.71E-53 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS26875 100d46294e36b67cc0fb79a3c70b3484 434 SUPERFAMILY SSF51905 107 270 9.71E-53 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS26875 100d46294e36b67cc0fb79a3c70b3484 434 Hamap MF_01202 D-amino acid dehydrogenase [dadA]. 1 411 49.527 T 22-04-2016 IPR023080 D-amino acid dehydrogenase DadA GO:0008718|GO:0019478|GO:0055114 UniPathway: UPA00043 PP4_RS26875 100d46294e36b67cc0fb79a3c70b3484 434 PANTHER PTHR13847:SF148 1 63 4.4E-240 T 22-04-2016 PP4_RS26875 100d46294e36b67cc0fb79a3c70b3484 434 PANTHER PTHR13847:SF148 107 423 4.4E-240 T 22-04-2016 PP4_RS26875 100d46294e36b67cc0fb79a3c70b3484 434 PANTHER PTHR13847 1 63 4.4E-240 T 22-04-2016 PP4_RS26875 100d46294e36b67cc0fb79a3c70b3484 434 PANTHER PTHR13847 107 423 4.4E-240 T 22-04-2016 PP4_RS26875 100d46294e36b67cc0fb79a3c70b3484 434 Gene3D G3DSA:3.40.50.720 354 416 5.9E-48 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS26875 100d46294e36b67cc0fb79a3c70b3484 434 Gene3D G3DSA:3.40.50.720 1 96 5.9E-48 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS26875 100d46294e36b67cc0fb79a3c70b3484 434 Gene3D G3DSA:3.40.50.720 194 268 5.9E-48 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS26875 100d46294e36b67cc0fb79a3c70b3484 434 Gene3D G3DSA:3.30.9.10 136 193 1.1E-12 T 22-04-2016 PP4_RS26875 100d46294e36b67cc0fb79a3c70b3484 434 Gene3D G3DSA:3.30.9.10 269 353 1.1E-12 T 22-04-2016 PP4_RS26875 100d46294e36b67cc0fb79a3c70b3484 434 Pfam PF01266 FAD dependent oxidoreductase 3 398 1.1E-67 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PP4_RS26875 100d46294e36b67cc0fb79a3c70b3484 434 SUPERFAMILY SSF54373 270 360 3.4E-18 T 22-04-2016 PP4_RS01945 4712e0d132f1c55085358efab20e756c 172 Pfam PF08281 Sigma-70, region 4 111 163 1.3E-14 T 22-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS01945 4712e0d132f1c55085358efab20e756c 172 PANTHER PTHR30173:SF9 10 163 7.0E-37 T 22-04-2016 PP4_RS01945 4712e0d132f1c55085358efab20e756c 172 SUPERFAMILY SSF88659 89 167 1.25E-14 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS01945 4712e0d132f1c55085358efab20e756c 172 PANTHER PTHR30173 10 163 7.0E-37 T 22-04-2016 PP4_RS01945 4712e0d132f1c55085358efab20e756c 172 Gene3D G3DSA:1.10.1740.10 5 80 3.5E-10 T 22-04-2016 PP4_RS01945 4712e0d132f1c55085358efab20e756c 172 Gene3D G3DSA:1.10.10.10 108 167 3.2E-12 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS01945 4712e0d132f1c55085358efab20e756c 172 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 14 166 9.7E-20 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS01945 4712e0d132f1c55085358efab20e756c 172 Pfam PF04542 Sigma-70 region 2 15 79 6.2E-13 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS01945 4712e0d132f1c55085358efab20e756c 172 SUPERFAMILY SSF88946 5 77 5.89E-13 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS18985 35ba41df22d70f9db77aa32ac96676e2 828 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 811 828 - T 22-04-2016 IPR010917 TonB-dependent receptor, conserved site PP4_RS18985 35ba41df22d70f9db77aa32ac96676e2 828 Pfam PF07715 TonB-dependent Receptor Plug Domain 159 262 9.4E-17 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS18985 35ba41df22d70f9db77aa32ac96676e2 828 SUPERFAMILY SSF56935 157 828 1.21E-125 T 22-04-2016 PP4_RS18985 35ba41df22d70f9db77aa32ac96676e2 828 PANTHER PTHR32552 151 828 1.7E-163 T 22-04-2016 PP4_RS18985 35ba41df22d70f9db77aa32ac96676e2 828 PANTHER PTHR32552 23 50 1.7E-163 T 22-04-2016 PP4_RS18985 35ba41df22d70f9db77aa32ac96676e2 828 Pfam PF00593 TonB dependent receptor 583 825 7.4E-29 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS18985 35ba41df22d70f9db77aa32ac96676e2 828 SMART SM00965 66 117 3.0E-14 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS18985 35ba41df22d70f9db77aa32ac96676e2 828 PANTHER PTHR32552:SF37 151 828 1.7E-163 T 22-04-2016 PP4_RS18985 35ba41df22d70f9db77aa32ac96676e2 828 PANTHER PTHR32552:SF37 23 50 1.7E-163 T 22-04-2016 PP4_RS18985 35ba41df22d70f9db77aa32ac96676e2 828 Gene3D G3DSA:2.40.170.20 277 828 8.1E-132 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS18985 35ba41df22d70f9db77aa32ac96676e2 828 Gene3D G3DSA:2.170.130.10 138 270 1.7E-32 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS18985 35ba41df22d70f9db77aa32ac96676e2 828 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 161 828 2.3E-113 T 22-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 PP4_RS18985 35ba41df22d70f9db77aa32ac96676e2 828 Pfam PF07660 Secretin and TonB N terminus short domain 66 116 1.4E-9 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS02605 4753e7cf458c4a23a0b9d154abd186b4 443 Pfam PF00344 SecY translocase 75 412 9.0E-114 T 22-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 PP4_RS02605 4753e7cf458c4a23a0b9d154abd186b4 443 PANTHER PTHR10906:SF2 15 442 4.5E-219 T 22-04-2016 PP4_RS02605 4753e7cf458c4a23a0b9d154abd186b4 443 SUPERFAMILY SSF103491 15 419 4.71E-127 T 22-04-2016 IPR023201 SecY subunit domain PP4_RS02605 4753e7cf458c4a23a0b9d154abd186b4 443 PANTHER PTHR10906 15 442 4.5E-219 T 22-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 PP4_RS02605 4753e7cf458c4a23a0b9d154abd186b4 443 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 21 424 1.4E-127 T 22-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 PP4_RS02605 4753e7cf458c4a23a0b9d154abd186b4 443 PIRSF PIRSF004557 10 436 8.5E-118 T 22-04-2016 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: REACT_15380 PP4_RS02605 4753e7cf458c4a23a0b9d154abd186b4 443 Gene3D G3DSA:1.10.3370.10 16 432 2.4E-159 T 22-04-2016 IPR023201 SecY subunit domain PP4_RS02605 4753e7cf458c4a23a0b9d154abd186b4 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 175 198 7.2E-89 T 22-04-2016 PP4_RS02605 4753e7cf458c4a23a0b9d154abd186b4 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 22 40 7.2E-89 T 22-04-2016 PP4_RS02605 4753e7cf458c4a23a0b9d154abd186b4 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 115 138 7.2E-89 T 22-04-2016 PP4_RS02605 4753e7cf458c4a23a0b9d154abd186b4 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 365 383 7.2E-89 T 22-04-2016 PP4_RS02605 4753e7cf458c4a23a0b9d154abd186b4 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 74 94 7.2E-89 T 22-04-2016 PP4_RS02605 4753e7cf458c4a23a0b9d154abd186b4 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 310 332 7.2E-89 T 22-04-2016 PP4_RS02605 4753e7cf458c4a23a0b9d154abd186b4 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 397 415 7.2E-89 T 22-04-2016 PP4_RS02605 4753e7cf458c4a23a0b9d154abd186b4 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 149 174 7.2E-89 T 22-04-2016 PP4_RS02605 4753e7cf458c4a23a0b9d154abd186b4 443 PRINTS PR00303 Preprotein translocase SecY subunit signature 267 286 7.2E-89 T 22-04-2016 PP4_RS02605 4753e7cf458c4a23a0b9d154abd186b4 443 ProSitePatterns PS00755 Protein secY signature 1. 75 94 - T 22-04-2016 IPR030659 SecY conserved site PP4_RS02605 4753e7cf458c4a23a0b9d154abd186b4 443 Hamap MF_01465 Protein translocase subunit SecY [secY]. 9 428 28.783 T 22-04-2016 IPR026593 Protein translocase subunit SecY PP4_RS12080 b069c3af292ec451e2525ba59ecb6db1 124 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 27 6.5E-9 T 22-04-2016 IPR012902 Prokaryotic N-terminal methylation site PP4_RS12080 b069c3af292ec451e2525ba59ecb6db1 124 PANTHER PTHR30093:SF6 5 98 1.1E-23 T 22-04-2016 PP4_RS12080 b069c3af292ec451e2525ba59ecb6db1 124 PRINTS PR00813 Bacterial general secretion pathway protein G signature 6 31 7.791487E-8 T 22-04-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 PP4_RS12080 b069c3af292ec451e2525ba59ecb6db1 124 PRINTS PR00813 Bacterial general secretion pathway protein G signature 42 60 7.791487E-8 T 22-04-2016 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 PP4_RS12080 b069c3af292ec451e2525ba59ecb6db1 124 Gene3D G3DSA:3.30.700.10 7 68 3.6E-11 T 22-04-2016 PP4_RS12080 b069c3af292ec451e2525ba59ecb6db1 124 PANTHER PTHR30093 5 98 1.1E-23 T 22-04-2016 PP4_RS12080 b069c3af292ec451e2525ba59ecb6db1 124 Pfam PF13633 Prokaryotic N-terminal methylation site 5 29 4.1E-11 T 22-04-2016 IPR012902 Prokaryotic N-terminal methylation site PP4_RS12080 b069c3af292ec451e2525ba59ecb6db1 124 Pfam PF08334 Type II secretion system (T2SS), protein G 30 91 2.0E-4 T 22-04-2016 IPR013545 Type II secretion system protein G PP4_RS12080 b069c3af292ec451e2525ba59ecb6db1 124 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 5 25 - T 22-04-2016 IPR012902 Prokaryotic N-terminal methylation site PP4_RS12080 b069c3af292ec451e2525ba59ecb6db1 124 SUPERFAMILY SSF54523 7 124 4.97E-22 T 22-04-2016 PP4_RS17060 7fe7a9472daa7fda113b43b77a9e1071 165 PANTHER PTHR13947 37 155 3.5E-13 T 22-04-2016 PP4_RS17060 7fe7a9472daa7fda113b43b77a9e1071 165 Gene3D G3DSA:3.40.630.30 6 159 3.9E-26 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS17060 7fe7a9472daa7fda113b43b77a9e1071 165 Pfam PF00583 Acetyltransferase (GNAT) family 59 144 1.5E-13 T 22-04-2016 IPR000182 GNAT domain GO:0008080 PP4_RS17060 7fe7a9472daa7fda113b43b77a9e1071 165 SUPERFAMILY SSF55729 15 162 5.64E-26 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS07955 bf8d20652585162e8e860dcfea747345 480 SMART SM00345 10 69 1.1E-21 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS07955 bf8d20652585162e8e860dcfea747345 480 Gene3D G3DSA:3.90.1150.10 350 448 5.2E-5 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS07955 bf8d20652585162e8e860dcfea747345 480 Pfam PF00155 Aminotransferase class I and II 141 450 8.2E-25 T 22-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PP4_RS07955 bf8d20652585162e8e860dcfea747345 480 SUPERFAMILY SSF53383 94 465 5.28E-89 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS07955 bf8d20652585162e8e860dcfea747345 480 Pfam PF00392 Bacterial regulatory proteins, gntR family 6 69 6.4E-18 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS07955 bf8d20652585162e8e860dcfea747345 480 PANTHER PTHR11751:SF314 88 470 2.0E-167 T 22-04-2016 PP4_RS07955 bf8d20652585162e8e860dcfea747345 480 Gene3D G3DSA:1.10.10.10 6 74 1.9E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS07955 bf8d20652585162e8e860dcfea747345 480 SUPERFAMILY SSF46785 4 73 2.72E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS07955 bf8d20652585162e8e860dcfea747345 480 Gene3D G3DSA:3.40.640.10 140 349 3.2E-62 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS07955 bf8d20652585162e8e860dcfea747345 480 PANTHER PTHR11751 88 470 2.0E-167 T 22-04-2016 PP4_RS05720 f9071717131a507922cc899b89a83915 233 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 121 211 1.8E-9 T 22-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 PP4_RS05720 f9071717131a507922cc899b89a83915 233 SUPERFAMILY SSF56214 120 231 2.22E-12 T 22-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 PP4_RS05720 f9071717131a507922cc899b89a83915 233 PRINTS PR01399 Enterobactin synthetase component D signature 162 178 2.2E-18 T 22-04-2016 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 UniPathway: UPA00017 PP4_RS05720 f9071717131a507922cc899b89a83915 233 PRINTS PR01399 Enterobactin synthetase component D signature 57 77 2.2E-18 T 22-04-2016 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 UniPathway: UPA00017 PP4_RS05720 f9071717131a507922cc899b89a83915 233 PRINTS PR01399 Enterobactin synthetase component D signature 87 105 2.2E-18 T 22-04-2016 IPR003542 Enterobactin synthetase-like, component D GO:0009239|GO:0009366|GO:0016780 UniPathway: UPA00017 PP4_RS05720 f9071717131a507922cc899b89a83915 233 PANTHER PTHR38096 18 233 8.3E-60 T 22-04-2016 PP4_RS05720 f9071717131a507922cc899b89a83915 233 Gene3D G3DSA:3.90.470.20 122 198 4.2E-7 T 22-04-2016 IPR008278 4'-phosphopantetheinyl transferase superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1 PP4_RS07320 d0e64cac058381489c2b091c057b8232 285 PANTHER PTHR30329:SF4 1 267 5.1E-81 T 22-04-2016 PP4_RS07320 d0e64cac058381489c2b091c057b8232 285 SUPERFAMILY SSF103088 131 243 2.88E-30 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS07320 d0e64cac058381489c2b091c057b8232 285 Pfam PF00691 OmpA family 142 237 1.3E-17 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS07320 d0e64cac058381489c2b091c057b8232 285 PANTHER PTHR30329 1 267 5.1E-81 T 22-04-2016 PP4_RS07320 d0e64cac058381489c2b091c057b8232 285 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 3 53 1.2E-21 T 22-04-2016 IPR025713 Motility protein B, N-terminal domain PP4_RS07320 d0e64cac058381489c2b091c057b8232 285 Gene3D G3DSA:3.30.1330.60 119 243 9.8E-31 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS05730 1adde9ea9eabb4a075ef10fc55b26b21 201 SUPERFAMILY SSF56925 52 201 3.14E-15 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 PP4_RS05730 1adde9ea9eabb4a075ef10fc55b26b21 201 Pfam PF13505 Outer membrane protein beta-barrel domain 8 178 1.1E-9 T 22-04-2016 IPR027385 Outer membrane protein beta-barrel PP4_RS05730 1adde9ea9eabb4a075ef10fc55b26b21 201 Gene3D G3DSA:2.40.160.20 76 172 1.9E-9 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 PP4_RS24580 3e14d034fc9cba2faa20ec73dd8b8c2a 143 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 15 112 1.3E-37 T 22-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS PP4_RS24580 3e14d034fc9cba2faa20ec73dd8b8c2a 143 Pfam PF02410 Ribosomal silencing factor during starvation 19 112 2.2E-30 T 22-04-2016 PP4_RS24580 3e14d034fc9cba2faa20ec73dd8b8c2a 143 PANTHER PTHR21043 9 115 1.4E-43 T 22-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS PP4_RS24580 3e14d034fc9cba2faa20ec73dd8b8c2a 143 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 11 113 24.746 T 22-04-2016 IPR004394 Protein Iojap/ribosomal silencing factor RsfS PP4_RS24580 3e14d034fc9cba2faa20ec73dd8b8c2a 143 Gene3D G3DSA:3.30.460.10 12 115 3.1E-40 T 22-04-2016 PP4_RS24580 3e14d034fc9cba2faa20ec73dd8b8c2a 143 SUPERFAMILY SSF81301 12 118 1.54E-38 T 22-04-2016 PP4_RS19970 21d2b63339662b25812a0c87532c4ff9 389 SUPERFAMILY SSF103473 8 369 2.75E-36 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS19970 21d2b63339662b25812a0c87532c4ff9 389 Pfam PF07690 Major Facilitator Superfamily 8 329 1.5E-23 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS19970 21d2b63339662b25812a0c87532c4ff9 389 Gene3D G3DSA:1.20.1250.20 202 369 2.5E-7 T 22-04-2016 PP4_RS19970 21d2b63339662b25812a0c87532c4ff9 389 Gene3D G3DSA:1.20.1250.20 10 187 4.1E-21 T 22-04-2016 PP4_RS19970 21d2b63339662b25812a0c87532c4ff9 389 ProSitePatterns PS00216 Sugar transport proteins signature 1. 58 74 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PP4_RS17805 357ea17a07665dce62fa62dd6764fd8d 378 PANTHER PTHR13847 4 375 8.8E-39 T 22-04-2016 PP4_RS17805 357ea17a07665dce62fa62dd6764fd8d 378 Gene3D G3DSA:3.30.9.10 81 141 5.8E-10 T 22-04-2016 PP4_RS17805 357ea17a07665dce62fa62dd6764fd8d 378 Gene3D G3DSA:3.30.9.10 218 305 5.8E-10 T 22-04-2016 PP4_RS17805 357ea17a07665dce62fa62dd6764fd8d 378 Gene3D G3DSA:3.50.50.60 311 375 1.3E-37 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS17805 357ea17a07665dce62fa62dd6764fd8d 378 Gene3D G3DSA:3.50.50.60 3 80 1.3E-37 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS17805 357ea17a07665dce62fa62dd6764fd8d 378 Gene3D G3DSA:3.50.50.60 142 217 1.3E-37 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS17805 357ea17a07665dce62fa62dd6764fd8d 378 Pfam PF01266 FAD dependent oxidoreductase 6 350 2.8E-44 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PP4_RS17805 357ea17a07665dce62fa62dd6764fd8d 378 SUPERFAMILY SSF51905 4 218 1.13E-40 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS17805 357ea17a07665dce62fa62dd6764fd8d 378 SUPERFAMILY SSF51905 311 359 1.13E-40 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS24615 92631b6ed1e536426df91ddd1b5bc40a 120 PANTHER PTHR33931:SF2 1 119 2.0E-35 T 22-04-2016 PP4_RS24615 92631b6ed1e536426df91ddd1b5bc40a 120 PANTHER PTHR33931 1 119 2.0E-35 T 22-04-2016 PP4_RS24615 92631b6ed1e536426df91ddd1b5bc40a 120 Pfam PF03788 LrgA family 13 106 1.0E-21 T 22-04-2016 IPR005538 LrgA/CidA family GO:0016021 PP4_RS05680 1b2cab99fab92a4c5c1eebe6f658c9ef 323 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 36 285 4.4E-63 T 22-04-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 PP4_RS05680 1b2cab99fab92a4c5c1eebe6f658c9ef 323 PANTHER PTHR33376:SF6 27 323 4.2E-112 T 22-04-2016 PP4_RS05680 1b2cab99fab92a4c5c1eebe6f658c9ef 323 PIRSF PIRSF006470 1 323 2.7E-97 T 22-04-2016 IPR004682 TRAP transporter solute receptor, DctP family GO:0006810|GO:0030288 PP4_RS05680 1b2cab99fab92a4c5c1eebe6f658c9ef 323 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 29 307 4.1E-76 T 22-04-2016 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0006810|GO:0030288 PP4_RS05680 1b2cab99fab92a4c5c1eebe6f658c9ef 323 PANTHER PTHR33376 27 323 4.2E-112 T 22-04-2016 PP4_RS02175 eb8e60d9d64efd4c1d950cece7375c90 424 SUPERFAMILY SSF53300 252 350 3.64E-5 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS02175 eb8e60d9d64efd4c1d950cece7375c90 424 Pfam PF04285 Protein of unknown function (DUF444) 4 420 9.0E-179 T 22-04-2016 IPR006698 Uncharacterised protein family UPF0229 PP4_RS02175 eb8e60d9d64efd4c1d950cece7375c90 424 Hamap MF_01232 UPF0229 protein YeaH [yeaH]. 1 423 40.598 T 22-04-2016 IPR006698 Uncharacterised protein family UPF0229 PP4_RS02175 eb8e60d9d64efd4c1d950cece7375c90 424 PANTHER PTHR30510 1 421 1.1E-173 T 22-04-2016 PP4_RS11255 cae3fec72c4f4810f0c0db8153aba993 172 PANTHER PTHR34821 3 168 1.3E-27 T 22-04-2016 PP4_RS11255 cae3fec72c4f4810f0c0db8153aba993 172 Pfam PF04657 Putative inner membrane exporter, YdcZ 12 150 1.5E-37 T 22-04-2016 IPR006750 Putative inner membrane exporter, YdcZ PP4_RS16615 24a7ed31a446ef851d138eb313a53f48 828 Pfam PF07660 Secretin and TonB N terminus short domain 77 124 8.8E-7 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS16615 24a7ed31a446ef851d138eb313a53f48 828 Gene3D G3DSA:2.40.170.20 290 828 1.2E-143 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS16615 24a7ed31a446ef851d138eb313a53f48 828 PANTHER PTHR32552 163 828 6.3E-166 T 22-04-2016 PP4_RS16615 24a7ed31a446ef851d138eb313a53f48 828 PANTHER PTHR32552 133 141 6.3E-166 T 22-04-2016 PP4_RS16615 24a7ed31a446ef851d138eb313a53f48 828 Pfam PF00593 TonB dependent receptor 588 826 5.0E-30 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS16615 24a7ed31a446ef851d138eb313a53f48 828 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 173 827 1.8E-122 T 22-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 PP4_RS16615 24a7ed31a446ef851d138eb313a53f48 828 Gene3D G3DSA:2.170.130.10 152 282 2.1E-39 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS16615 24a7ed31a446ef851d138eb313a53f48 828 SUPERFAMILY SSF56935 133 828 1.74E-136 T 22-04-2016 PP4_RS16615 24a7ed31a446ef851d138eb313a53f48 828 PANTHER PTHR32552:SF17 163 828 6.3E-166 T 22-04-2016 PP4_RS16615 24a7ed31a446ef851d138eb313a53f48 828 PANTHER PTHR32552:SF17 133 141 6.3E-166 T 22-04-2016 PP4_RS16615 24a7ed31a446ef851d138eb313a53f48 828 Pfam PF07715 TonB-dependent Receptor Plug Domain 173 274 2.9E-21 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS16615 24a7ed31a446ef851d138eb313a53f48 828 SMART SM00965 76 127 1.5E-10 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS04410 534716b60bcbcc23cf5fb4fec26bff9b 515 Gene3D G3DSA:1.20.1250.20 320 496 2.5E-12 T 22-04-2016 PP4_RS04410 534716b60bcbcc23cf5fb4fec26bff9b 515 TIGRFAM TIGR00901 2A0125: AmpG-like permease 29 455 2.3E-130 T 22-04-2016 IPR004752 AmpG-like permease/Acetyl-coenzyme A transporter 1 GO:0016020 PP4_RS04410 534716b60bcbcc23cf5fb4fec26bff9b 515 Pfam PF07690 Major Facilitator Superfamily 21 324 1.3E-9 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS04410 534716b60bcbcc23cf5fb4fec26bff9b 515 SUPERFAMILY SSF103473 296 501 7.59E-30 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS04410 534716b60bcbcc23cf5fb4fec26bff9b 515 SUPERFAMILY SSF103473 7 235 7.59E-30 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS04410 534716b60bcbcc23cf5fb4fec26bff9b 515 Gene3D G3DSA:1.20.1250.20 16 214 1.1E-13 T 22-04-2016 PP4_RS04410 534716b60bcbcc23cf5fb4fec26bff9b 515 PANTHER PTHR12778 16 215 7.5E-87 T 22-04-2016 PP4_RS04410 534716b60bcbcc23cf5fb4fec26bff9b 515 PANTHER PTHR12778 300 500 7.5E-87 T 22-04-2016 PP4_RS17240 579064abd6486b5b7fd44a68c20263c2 405 PANTHER PTHR23513 1 388 2.5E-35 T 22-04-2016 PP4_RS17240 579064abd6486b5b7fd44a68c20263c2 405 Gene3D G3DSA:1.20.1250.20 6 192 9.3E-14 T 22-04-2016 PP4_RS17240 579064abd6486b5b7fd44a68c20263c2 405 SUPERFAMILY SSF103473 216 389 6.28E-13 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS17240 579064abd6486b5b7fd44a68c20263c2 405 Gene3D G3DSA:1.20.1250.20 220 391 6.5E-11 T 22-04-2016 PP4_RS17240 579064abd6486b5b7fd44a68c20263c2 405 Pfam PF07690 Major Facilitator Superfamily 18 200 1.4E-11 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS17240 579064abd6486b5b7fd44a68c20263c2 405 SUPERFAMILY SSF103473 4 194 1.18E-18 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS06340 8f96dc57da0a8ec14c320bf635dd966d 314 PANTHER PTHR33055 7 305 1.2E-33 T 22-04-2016 PP4_RS06340 8f96dc57da0a8ec14c320bf635dd966d 314 Pfam PF02371 Transposase IS116/IS110/IS902 family 191 264 2.0E-17 T 22-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PP4_RS06340 8f96dc57da0a8ec14c320bf635dd966d 314 PANTHER PTHR33055:SF3 7 305 1.2E-33 T 22-04-2016 PP4_RS06340 8f96dc57da0a8ec14c320bf635dd966d 314 Pfam PF01548 Transposase 10 145 1.6E-17 T 22-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 PP4_RS16040 4a5efe4dbbca4c5b2c6854cdb60c620a 261 SUPERFAMILY SSF56529 7 242 2.88E-38 T 22-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 PP4_RS16040 4a5efe4dbbca4c5b2c6854cdb60c620a 261 Gene3D G3DSA:3.90.850.10 9 254 4.1E-45 T 22-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 PP4_RS16040 4a5efe4dbbca4c5b2c6854cdb60c620a 261 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 89 235 2.8E-6 T 22-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 PP4_RS16040 4a5efe4dbbca4c5b2c6854cdb60c620a 261 PANTHER PTHR30143 12 258 5.0E-29 T 22-04-2016 PP4_RS09650 00acb65a8e5bed0ed4f94076518f04a9 254 PANTHER PTHR11820 22 254 7.3E-147 T 22-04-2016 PP4_RS09650 00acb65a8e5bed0ed4f94076518f04a9 254 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 45 243 5.9E-58 T 22-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 PP4_RS09650 00acb65a8e5bed0ed4f94076518f04a9 254 TIGRFAM TIGR02303 HpaG-C-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit 2 245 2.4E-124 T 22-04-2016 IPR012684 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit GO:0008704|GO:0018800|GO:1901023 KEGG: 00350+5.3.3.10+4.1.1.68|UniPathway: UPA00208|UniPathway: UPA00208 PP4_RS09650 00acb65a8e5bed0ed4f94076518f04a9 254 SUPERFAMILY SSF56529 38 248 2.35E-72 T 22-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 PP4_RS09650 00acb65a8e5bed0ed4f94076518f04a9 254 PANTHER PTHR11820:SF8 22 254 7.3E-147 T 22-04-2016 PP4_RS09650 00acb65a8e5bed0ed4f94076518f04a9 254 Gene3D G3DSA:3.90.850.10 38 247 2.2E-77 T 22-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 PP4_RS16770 1ab1959698005d06908a474711566854 261 PANTHER PTHR24220:SF589 18 245 6.5E-91 T 22-04-2016 PP4_RS16770 1ab1959698005d06908a474711566854 261 Pfam PF00005 ABC transporter 36 175 7.6E-32 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS16770 1ab1959698005d06908a474711566854 261 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS16770 1ab1959698005d06908a474711566854 261 SMART SM00382 45 240 1.3E-15 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS16770 1ab1959698005d06908a474711566854 261 Gene3D G3DSA:3.40.50.300 10 232 1.1E-68 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS16770 1ab1959698005d06908a474711566854 261 PANTHER PTHR24220 18 245 6.5E-91 T 22-04-2016 PP4_RS16770 1ab1959698005d06908a474711566854 261 SUPERFAMILY SSF52540 17 252 3.64E-69 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS15920 edf25f807849991943d3a6ac46192041 631 Gene3D G3DSA:2.140.10.10 39 623 4.5E-145 T 22-04-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain PP4_RS15920 edf25f807849991943d3a6ac46192041 631 ProSitePatterns PS00363 Bacterial quinoprotein dehydrogenases signature 1. 59 87 - T 22-04-2016 IPR001479 Quinoprotein dehydrogenase, conserved site GO:0030288|GO:0055114 PP4_RS15920 edf25f807849991943d3a6ac46192041 631 SUPERFAMILY SSF50998 55 617 3.4E-146 T 22-04-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily PP4_RS15920 edf25f807849991943d3a6ac46192041 631 Pfam PF13360 PQQ-like domain 90 347 2.5E-17 T 22-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat PP4_RS15920 edf25f807849991943d3a6ac46192041 631 PANTHER PTHR32303:SF2 53 245 8.2E-139 T 22-04-2016 PP4_RS15920 edf25f807849991943d3a6ac46192041 631 PANTHER PTHR32303:SF2 439 631 8.2E-139 T 22-04-2016 PP4_RS15920 edf25f807849991943d3a6ac46192041 631 PANTHER PTHR32303:SF2 270 400 8.2E-139 T 22-04-2016 PP4_RS15920 edf25f807849991943d3a6ac46192041 631 ProSitePatterns PS00364 Bacterial quinoprotein dehydrogenases signature 2. 290 311 - T 22-04-2016 IPR001479 Quinoprotein dehydrogenase, conserved site GO:0030288|GO:0055114 PP4_RS15920 edf25f807849991943d3a6ac46192041 631 TIGRFAM TIGR03075 PQQ_enz_alc_DH: PQQ-dependent dehydrogenase, methanol/ethanol family 42 594 3.8E-238 T 22-04-2016 IPR017512 PQQ-dependent dehydrogenase, methanol/ethanol family GO:0005509|GO:0016020|GO:0016614|GO:0055114 PP4_RS15920 edf25f807849991943d3a6ac46192041 631 Pfam PF01011 PQQ enzyme repeat 540 576 2.5E-10 T 22-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat PP4_RS15920 edf25f807849991943d3a6ac46192041 631 PANTHER PTHR32303 53 245 8.2E-139 T 22-04-2016 PP4_RS15920 edf25f807849991943d3a6ac46192041 631 PANTHER PTHR32303 439 631 8.2E-139 T 22-04-2016 PP4_RS15920 edf25f807849991943d3a6ac46192041 631 PANTHER PTHR32303 270 400 8.2E-139 T 22-04-2016 PP4_RS15920 edf25f807849991943d3a6ac46192041 631 SMART SM00564 155 186 3.3E-6 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS15920 edf25f807849991943d3a6ac46192041 631 SMART SM00564 206 243 230.0 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS15920 edf25f807849991943d3a6ac46192041 631 SMART SM00564 105 137 1.7E-6 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS15920 edf25f807849991943d3a6ac46192041 631 SMART SM00564 535 566 6.9E-7 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS15920 edf25f807849991943d3a6ac46192041 631 SMART SM00564 369 405 250.0 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS15920 edf25f807849991943d3a6ac46192041 631 SMART SM00564 483 525 110.0 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS10275 880c531cbfdab040345615b5ddeb0d30 175 ProSitePatterns PS00935 Glyoxalase I signature 2. 111 127 - T 22-04-2016 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|UniPathway: UPA00619 PP4_RS10275 880c531cbfdab040345615b5ddeb0d30 175 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 25 167 3.5E-26 T 22-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain PP4_RS10275 880c531cbfdab040345615b5ddeb0d30 175 SUPERFAMILY SSF54593 11 171 1.61E-39 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PP4_RS10275 880c531cbfdab040345615b5ddeb0d30 175 PANTHER PTHR10374 11 173 4.3E-89 T 22-04-2016 PP4_RS10275 880c531cbfdab040345615b5ddeb0d30 175 Gene3D G3DSA:3.10.180.10 11 171 2.3E-64 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PP4_RS10275 880c531cbfdab040345615b5ddeb0d30 175 ProSitePatterns PS00934 Glyoxalase I signature 1. 27 48 - T 22-04-2016 IPR018146 Glyoxalase I, conserved site GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|UniPathway: UPA00619 PP4_RS10275 880c531cbfdab040345615b5ddeb0d30 175 PANTHER PTHR10374:SF16 11 173 4.3E-89 T 22-04-2016 PP4_RS10275 880c531cbfdab040345615b5ddeb0d30 175 TIGRFAM TIGR00068 glyox_I: lactoylglutathione lyase 14 172 7.5E-47 T 22-04-2016 IPR004361 Glyoxalase I GO:0004462|GO:0046872 KEGG: 00620+4.4.1.5|MetaCyc: PWY-5386|UniPathway: UPA00619 PP4_RS02565 2d90d16b9fb531b8972f2f2efd617f7d 179 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 1 179 43.626 T 22-04-2016 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02565 2d90d16b9fb531b8972f2f2efd617f7d 179 SUPERFAMILY SSF55282 3 179 6.12E-77 T 22-04-2016 IPR022803 Ribosomal protein L5 domain PP4_RS02565 2d90d16b9fb531b8972f2f2efd617f7d 179 PANTHER PTHR11994 1 178 1.1E-94 T 22-04-2016 PP4_RS02565 2d90d16b9fb531b8972f2f2efd617f7d 179 Pfam PF00281 Ribosomal protein L5 24 80 2.6E-27 T 22-04-2016 IPR031310 Ribosomal protein L5, N-terminal PP4_RS02565 2d90d16b9fb531b8972f2f2efd617f7d 179 PIRSF PIRSF002161 1 179 3.8E-62 T 22-04-2016 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 PP4_RS02565 2d90d16b9fb531b8972f2f2efd617f7d 179 Pfam PF00673 ribosomal L5P family C-terminus 84 177 1.9E-39 T 22-04-2016 IPR031309 Ribosomal protein L5, C-terminal PP4_RS02565 2d90d16b9fb531b8972f2f2efd617f7d 179 Gene3D G3DSA:3.30.1440.10 1 179 5.8E-77 T 22-04-2016 IPR022803 Ribosomal protein L5 domain PP4_RS02565 2d90d16b9fb531b8972f2f2efd617f7d 179 ProSitePatterns PS00358 Ribosomal protein L5 signature. 57 73 - T 22-04-2016 IPR020929 Ribosomal protein L5, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS07600 69951546c1e731578356f60fe8b8e055 799 Gene3D G3DSA:3.30.365.10 624 780 7.7E-87 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS07600 69951546c1e731578356f60fe8b8e055 799 Gene3D G3DSA:3.30.365.10 366 457 7.7E-87 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS07600 69951546c1e731578356f60fe8b8e055 799 PANTHER PTHR11908 12 782 0.0 T 22-04-2016 PP4_RS07600 69951546c1e731578356f60fe8b8e055 799 Pfam PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain 39 145 2.4E-20 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead PP4_RS07600 69951546c1e731578356f60fe8b8e055 799 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 167 709 5.5E-207 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS07600 69951546c1e731578356f60fe8b8e055 799 SUPERFAMILY SSF56003 147 780 3.14E-204 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS07600 69951546c1e731578356f60fe8b8e055 799 SUPERFAMILY SSF54665 15 147 2.62E-37 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead PP4_RS07600 69951546c1e731578356f60fe8b8e055 799 PANTHER PTHR11908:SF66 12 782 0.0 T 22-04-2016 PP4_RS07600 69951546c1e731578356f60fe8b8e055 799 Gene3D G3DSA:3.90.1170.50 25 146 1.8E-35 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead PP4_RS07600 69951546c1e731578356f60fe8b8e055 799 Gene3D G3DSA:3.30.365.10 182 288 2.9E-33 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS07600 69951546c1e731578356f60fe8b8e055 799 SMART SM01008 39 146 4.7E-38 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead PP4_RS07600 69951546c1e731578356f60fe8b8e055 799 Gene3D G3DSA:3.30.365.10 147 181 7.2E-24 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS07600 69951546c1e731578356f60fe8b8e055 799 Gene3D G3DSA:3.30.365.10 290 365 7.2E-24 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS07600 69951546c1e731578356f60fe8b8e055 799 Gene3D G3DSA:3.30.365.10 458 613 6.6E-54 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS07600 69951546c1e731578356f60fe8b8e055 799 TIGRFAM TIGR02965 xanthine_xdhB: xanthine dehydrogenase, molybdopterin binding subunit 25 781 0.0 T 22-04-2016 IPR014309 Xanthine dehydrogenase, molybdopterin binding subunit GO:0030151 KEGG: 00230+1.17.1.4+1.17.3.2|KEGG: 00232+1.17.3.2|KEGG: 00983+1.17.3.2|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999 PP4_RS00815 e630df0283cfb6662e080f52c55f20af 318 Pfam PF04773 FecR protein 114 203 1.2E-11 T 22-04-2016 IPR006860 FecR protein PP4_RS00815 e630df0283cfb6662e080f52c55f20af 318 PANTHER PTHR30273 4 318 1.7E-84 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS00815 e630df0283cfb6662e080f52c55f20af 318 PIRSF PIRSF018266 1 316 4.2E-78 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS00815 e630df0283cfb6662e080f52c55f20af 318 PANTHER PTHR30273:SF3 4 318 1.7E-84 T 22-04-2016 PP4_RS00815 e630df0283cfb6662e080f52c55f20af 318 Pfam PF16220 Domain of unknown function (DUF4880) 12 52 2.0E-11 T 22-04-2016 IPR032623 FecR, N-terminal PP4_RS00135 84cef6e7777025ab32a1cd660f225d49 322 Pfam PF03466 LysR substrate binding domain 110 312 1.0E-9 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS00135 84cef6e7777025ab32a1cd660f225d49 322 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 33 86 7.5E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS00135 84cef6e7777025ab32a1cd660f225d49 322 SUPERFAMILY SSF53850 110 313 8.87E-11 T 22-04-2016 PP4_RS00135 84cef6e7777025ab32a1cd660f225d49 322 Gene3D G3DSA:1.10.10.10 33 95 7.8E-10 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS00135 84cef6e7777025ab32a1cd660f225d49 322 SUPERFAMILY SSF46785 31 96 2.86E-8 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS21655 5da88a8f49c49f9c8f0e2f279bd03584 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 96 274 3.9E-13 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS21655 5da88a8f49c49f9c8f0e2f279bd03584 281 SUPERFAMILY SSF161098 14 281 5.14E-60 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS21655 5da88a8f49c49f9c8f0e2f279bd03584 281 PANTHER PTHR32243:SF23 5 281 1.0E-136 T 22-04-2016 PP4_RS21655 5da88a8f49c49f9c8f0e2f279bd03584 281 Gene3D G3DSA:1.10.3720.10 12 266 1.3E-51 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS21655 5da88a8f49c49f9c8f0e2f279bd03584 281 PANTHER PTHR32243 5 281 1.0E-136 T 22-04-2016 PP4_RS09000 e33d00d138ea4caaa4f7de8814a8a4dc 721 Pfam PF00672 HAMP domain 370 440 9.2E-7 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS09000 e33d00d138ea4caaa4f7de8814a8a4dc 721 SMART SM00304 388 444 9.6E-5 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS09000 e33d00d138ea4caaa4f7de8814a8a4dc 721 Gene3D G3DSA:1.10.287.950 476 685 7.5E-46 T 22-04-2016 PP4_RS09000 e33d00d138ea4caaa4f7de8814a8a4dc 721 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 583 612 1.4E-23 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS09000 e33d00d138ea4caaa4f7de8814a8a4dc 721 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 473 502 1.4E-23 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS09000 e33d00d138ea4caaa4f7de8814a8a4dc 721 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 554 581 1.4E-23 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS09000 e33d00d138ea4caaa4f7de8814a8a4dc 721 SMART SM00283 452 710 3.1E-42 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS09000 e33d00d138ea4caaa4f7de8814a8a4dc 721 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 521 689 2.7E-40 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS09000 e33d00d138ea4caaa4f7de8814a8a4dc 721 SUPERFAMILY SSF58104 415 708 2.01E-58 T 22-04-2016 PP4_RS09000 e33d00d138ea4caaa4f7de8814a8a4dc 721 PANTHER PTHR32089 369 713 2.1E-70 T 22-04-2016 PP4_RS13735 925046855da5785b0dca253f998bd189 395 SUPERFAMILY SSF47203 233 374 7.33E-10 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS13735 925046855da5785b0dca253f998bd189 395 PANTHER PTHR10909:SF316 11 380 2.1E-39 T 22-04-2016 PP4_RS13735 925046855da5785b0dca253f998bd189 395 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 244 373 3.9E-30 T 22-04-2016 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain PP4_RS13735 925046855da5785b0dca253f998bd189 395 SUPERFAMILY SSF56645 7 209 1.1E-35 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 PP4_RS13735 925046855da5785b0dca253f998bd189 395 PIRSF PIRSF016578 1 395 8.2E-117 T 22-04-2016 PP4_RS13735 925046855da5785b0dca253f998bd189 395 Gene3D G3DSA:1.20.140.10 204 394 6.6E-35 T 22-04-2016 PP4_RS13735 925046855da5785b0dca253f998bd189 395 PANTHER PTHR10909 11 380 2.1E-39 T 22-04-2016 PP4_RS13735 925046855da5785b0dca253f998bd189 395 Gene3D G3DSA:1.10.540.10 4 113 3.5E-37 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS13735 925046855da5785b0dca253f998bd189 395 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 8 110 1.2E-5 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS13735 925046855da5785b0dca253f998bd189 395 Gene3D G3DSA:2.40.110.10 118 203 6.1E-27 T 22-04-2016 PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 Gene3D G3DSA:3.40.50.670 720 788 1.2E-100 T 22-04-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 Gene3D G3DSA:3.40.50.670 406 552 1.2E-100 T 22-04-2016 IPR013759 DNA topoisomerase, type IIA, central domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 34 175 1.9E-23 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 Gene3D G3DSA:3.30.565.10 7 219 1.8E-91 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 SUPERFAMILY SSF56719 732 797 1.46E-87 T 22-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 SUPERFAMILY SSF56719 396 562 1.46E-87 T 22-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 734 795 4.3E-30 T 22-04-2016 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 Pfam PF00204 DNA gyrase B 222 392 3.6E-57 T 22-04-2016 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 4 806 101.672 T 22-04-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 Pfam PF01751 Toprim domain 421 532 3.4E-17 T 22-04-2016 IPR006171 Toprim domain PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 PRINTS PR00418 DNA topoisomerase II family signature 270 283 2.6E-71 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 PRINTS PR00418 DNA topoisomerase II family signature 527 539 2.6E-71 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 PRINTS PR00418 DNA topoisomerase II family signature 738 754 2.6E-71 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 PRINTS PR00418 DNA topoisomerase II family signature 115 129 2.6E-71 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 PRINTS PR00418 DNA topoisomerase II family signature 37 52 2.6E-71 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 PRINTS PR00418 DNA topoisomerase II family signature 489 505 2.6E-71 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 PRINTS PR00418 DNA topoisomerase II family signature 72 85 2.6E-71 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 PRINTS PR00418 DNA topoisomerase II family signature 422 436 2.6E-71 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 PRINTS PR00418 DNA topoisomerase II family signature 507 524 2.6E-71 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 PANTHER PTHR10169 4 555 0.0 T 22-04-2016 PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 PANTHER PTHR10169 726 805 0.0 T 22-04-2016 PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 Gene3D G3DSA:3.30.230.10 221 394 2.8E-73 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 ProSitePatterns PS00177 DNA topoisomerase II signature. 424 432 - T 22-04-2016 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 SUPERFAMILY SSF55874 7 219 1.27E-74 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 SMART SM00387 33 177 1.3E-28 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 SUPERFAMILY SSF54211 222 394 6.64E-58 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 SMART SM00433 37 799 1.0E-269 T 22-04-2016 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 PRINTS PR01159 DNA gyrase subunit B signature 362 376 1.1E-84 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 PRINTS PR01159 DNA gyrase subunit B signature 221 243 1.1E-84 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 PRINTS PR01159 DNA gyrase subunit B signature 244 262 1.1E-84 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 PRINTS PR01159 DNA gyrase subunit B signature 314 330 1.1E-84 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 PRINTS PR01159 DNA gyrase subunit B signature 182 197 1.1E-84 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 PRINTS PR01159 DNA gyrase subunit B signature 775 791 1.1E-84 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 PRINTS PR01159 DNA gyrase subunit B signature 472 481 1.1E-84 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 PRINTS PR01159 DNA gyrase subunit B signature 376 396 1.1E-84 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 PRINTS PR01159 DNA gyrase subunit B signature 7 17 1.1E-84 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 PRINTS PR01159 DNA gyrase subunit B signature 759 771 1.1E-84 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 PRINTS PR01159 DNA gyrase subunit B signature 197 210 1.1E-84 T 22-04-2016 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS00020 8711f05736718d6cfcfab256cf3c206e 806 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 7 805 8.0E-304 T 22-04-2016 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PP4_RS19885 7b453dc42726f18e73d71aaf1a9a747c 174 SMART SM00248 50 79 6.6E-4 T 22-04-2016 IPR002110 Ankyrin repeat GO:0005515 PP4_RS19885 7b453dc42726f18e73d71aaf1a9a747c 174 SMART SM00248 83 112 0.5 T 22-04-2016 IPR002110 Ankyrin repeat GO:0005515 PP4_RS19885 7b453dc42726f18e73d71aaf1a9a747c 174 SMART SM00248 116 145 6.4E-5 T 22-04-2016 IPR002110 Ankyrin repeat GO:0005515 PP4_RS19885 7b453dc42726f18e73d71aaf1a9a747c 174 Pfam PF12796 Ankyrin repeats (3 copies) 26 79 2.2E-6 T 22-04-2016 IPR020683 Ankyrin repeat-containing domain PP4_RS19885 7b453dc42726f18e73d71aaf1a9a747c 174 Pfam PF12796 Ankyrin repeats (3 copies) 82 147 1.7E-12 T 22-04-2016 IPR020683 Ankyrin repeat-containing domain PP4_RS19885 7b453dc42726f18e73d71aaf1a9a747c 174 PANTHER PTHR24188:SF32 26 169 4.6E-35 T 22-04-2016 PP4_RS19885 7b453dc42726f18e73d71aaf1a9a747c 174 SUPERFAMILY SSF48403 26 167 3.02E-36 T 22-04-2016 IPR020683 Ankyrin repeat-containing domain PP4_RS19885 7b453dc42726f18e73d71aaf1a9a747c 174 Gene3D G3DSA:1.25.40.20 26 98 2.6E-19 T 22-04-2016 IPR020683 Ankyrin repeat-containing domain PP4_RS19885 7b453dc42726f18e73d71aaf1a9a747c 174 Gene3D G3DSA:1.25.40.20 99 169 1.8E-19 T 22-04-2016 IPR020683 Ankyrin repeat-containing domain PP4_RS19885 7b453dc42726f18e73d71aaf1a9a747c 174 PANTHER PTHR24188 26 169 4.6E-35 T 22-04-2016 PP4_RS13005 bd739da790f4fc74b2082da805419a74 328 Pfam PF11740 Plasmid replication region DNA-binding N-term 11 118 1.2E-22 T 22-04-2016 IPR021104 KfrA, N-terminal DNA-binding domain PP4_RS22395 9933f75dd33baeaa0e643abaa6b42472 215 SUPERFAMILY SSF50494 25 158 3.22E-14 T 22-04-2016 IPR009003 Peptidase S1, PA clan PP4_RS22395 9933f75dd33baeaa0e643abaa6b42472 215 Gene3D G3DSA:2.40.10.10 122 157 4.4E-9 T 22-04-2016 PP4_RS03220 694edbb94c0b81d895803f5d60d654d5 617 Pfam PF01590 GAF domain 76 207 1.3E-7 T 22-04-2016 IPR003018 GAF domain GO:0005515 PP4_RS03220 694edbb94c0b81d895803f5d60d654d5 617 Gene3D G3DSA:1.10.10.60 573 605 2.0E-9 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS03220 694edbb94c0b81d895803f5d60d654d5 617 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 399 414 - T 22-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PP4_RS03220 694edbb94c0b81d895803f5d60d654d5 617 SUPERFAMILY SSF55781 71 212 7.2E-10 T 22-04-2016 IPR029016 GAF domain-like PP4_RS03220 694edbb94c0b81d895803f5d60d654d5 617 Gene3D G3DSA:3.40.50.300 315 485 4.5E-53 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03220 694edbb94c0b81d895803f5d60d654d5 617 Gene3D G3DSA:1.10.8.60 487 560 7.3E-15 T 22-04-2016 PP4_RS03220 694edbb94c0b81d895803f5d60d654d5 617 PANTHER PTHR32071:SF5 315 616 3.5E-135 T 22-04-2016 PP4_RS03220 694edbb94c0b81d895803f5d60d654d5 617 PANTHER PTHR32071 315 616 3.5E-135 T 22-04-2016 PP4_RS03220 694edbb94c0b81d895803f5d60d654d5 617 Pfam PF02954 Bacterial regulatory protein, Fis family 573 605 7.3E-8 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS03220 694edbb94c0b81d895803f5d60d654d5 617 SMART SM00382 332 476 2.0E-14 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS03220 694edbb94c0b81d895803f5d60d654d5 617 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 336 349 - T 22-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 PP4_RS03220 694edbb94c0b81d895803f5d60d654d5 617 Gene3D G3DSA:3.30.450.40 160 211 3.1E-6 T 22-04-2016 IPR029016 GAF domain-like PP4_RS03220 694edbb94c0b81d895803f5d60d654d5 617 Pfam PF00158 Sigma-54 interaction domain 315 477 1.2E-64 T 22-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 PP4_RS03220 694edbb94c0b81d895803f5d60d654d5 617 SUPERFAMILY SSF52540 315 554 2.5E-60 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03220 694edbb94c0b81d895803f5d60d654d5 617 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 574 591 3.9E-6 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS03220 694edbb94c0b81d895803f5d60d654d5 617 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 591 611 3.9E-6 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS03220 694edbb94c0b81d895803f5d60d654d5 617 SUPERFAMILY SSF46689 572 609 1.86E-6 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS11095 756cd178c235a6b1418eb22eb91b36fc 459 Gene3D G3DSA:3.50.50.60 169 271 3.0E-18 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS11095 756cd178c235a6b1418eb22eb91b36fc 459 SUPERFAMILY SSF51905 1 244 5.83E-49 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS11095 756cd178c235a6b1418eb22eb91b36fc 459 SUPERFAMILY SSF51905 257 356 1.78E-7 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS11095 756cd178c235a6b1418eb22eb91b36fc 459 Pfam PF00743 Flavin-binding monooxygenase-like 244 381 1.8E-8 T 22-04-2016 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 PP4_RS11095 756cd178c235a6b1418eb22eb91b36fc 459 Pfam PF00743 Flavin-binding monooxygenase-like 4 222 1.0E-30 T 22-04-2016 IPR020946 Flavin monooxygenase-like GO:0004499|GO:0050660|GO:0050661|GO:0055114 PP4_RS11095 756cd178c235a6b1418eb22eb91b36fc 459 Gene3D G3DSA:3.50.50.60 272 420 5.5E-55 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS11095 756cd178c235a6b1418eb22eb91b36fc 459 Gene3D G3DSA:3.50.50.60 4 168 5.5E-55 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS11095 756cd178c235a6b1418eb22eb91b36fc 459 PANTHER PTHR23023:SF124 1 401 5.2E-108 T 22-04-2016 PP4_RS11095 756cd178c235a6b1418eb22eb91b36fc 459 PANTHER PTHR23023 1 401 5.2E-108 T 22-04-2016 PP4_RS06755 23e42e797c826e2585b41e727aa42c41 355 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 85 247 1.9E-54 T 22-04-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 PP4_RS06755 23e42e797c826e2585b41e727aa42c41 355 PANTHER PTHR21600:SF2 15 323 1.4E-97 T 22-04-2016 PP4_RS06755 23e42e797c826e2585b41e727aa42c41 355 Pfam PF01479 S4 domain 18 62 1.0E-10 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 PP4_RS06755 23e42e797c826e2585b41e727aa42c41 355 Gene3D G3DSA:3.10.290.10 16 74 8.3E-17 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 PP4_RS06755 23e42e797c826e2585b41e727aa42c41 355 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 119 133 - T 22-04-2016 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 PP4_RS06755 23e42e797c826e2585b41e727aa42c41 355 SMART SM00363 17 74 2.2E-8 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 PP4_RS06755 23e42e797c826e2585b41e727aa42c41 355 Pfam PF00849 RNA pseudouridylate synthase 81 212 6.0E-15 T 22-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS06755 23e42e797c826e2585b41e727aa42c41 355 SUPERFAMILY SSF55174 18 109 1.23E-13 T 22-04-2016 PP4_RS06755 23e42e797c826e2585b41e727aa42c41 355 PANTHER PTHR21600 15 323 1.4E-97 T 22-04-2016 PP4_RS06755 23e42e797c826e2585b41e727aa42c41 355 SUPERFAMILY SSF55120 79 251 7.91E-44 T 22-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS12565 a11fd136bd619fb2fed380ae12cdb7f8 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 139 155 1.5E-40 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS12565 a11fd136bd619fb2fed380ae12cdb7f8 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 17 34 1.5E-40 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS12565 a11fd136bd619fb2fed380ae12cdb7f8 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 186 203 1.5E-40 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS12565 a11fd136bd619fb2fed380ae12cdb7f8 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 165 184 1.5E-40 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS12565 a11fd136bd619fb2fed380ae12cdb7f8 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 92 103 1.5E-40 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS12565 a11fd136bd619fb2fed380ae12cdb7f8 275 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 221 241 1.5E-40 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS12565 a11fd136bd619fb2fed380ae12cdb7f8 275 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 152 180 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PP4_RS12565 a11fd136bd619fb2fed380ae12cdb7f8 275 PANTHER PTHR24322 165 196 2.1E-49 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS12565 a11fd136bd619fb2fed380ae12cdb7f8 275 PANTHER PTHR24322 20 149 2.1E-49 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS12565 a11fd136bd619fb2fed380ae12cdb7f8 275 SUPERFAMILY SSF51735 17 257 1.93E-78 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS12565 a11fd136bd619fb2fed380ae12cdb7f8 275 Gene3D G3DSA:3.40.50.720 13 257 5.8E-82 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS12565 a11fd136bd619fb2fed380ae12cdb7f8 275 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 22 257 9.6E-64 T 22-04-2016 PP4_RS12565 a11fd136bd619fb2fed380ae12cdb7f8 275 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 16 201 1.8E-4 T 22-04-2016 PP4_RS12565 a11fd136bd619fb2fed380ae12cdb7f8 275 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 92 103 9.4E-10 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS12565 a11fd136bd619fb2fed380ae12cdb7f8 275 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 153 9.4E-10 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS12565 a11fd136bd619fb2fed380ae12cdb7f8 275 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 184 9.4E-10 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS01200 b77a5aaa7922583ed303538ed9ccd481 342 SUPERFAMILY SSF55073 186 340 2.12E-46 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS01200 b77a5aaa7922583ed303538ed9ccd481 342 Gene3D G3DSA:3.30.450.20 47 168 2.6E-23 T 22-04-2016 PP4_RS01200 b77a5aaa7922583ed303538ed9ccd481 342 SMART SM00086 128 170 0.0019 T 22-04-2016 IPR001610 PAC motif PP4_RS01200 b77a5aaa7922583ed303538ed9ccd481 342 SMART SM00091 53 122 3.2E-4 T 22-04-2016 IPR000014 PAS domain PP4_RS01200 b77a5aaa7922583ed303538ed9ccd481 342 Pfam PF00990 Diguanylate cyclase, GGDEF domain 181 338 1.8E-43 T 22-04-2016 IPR000160 GGDEF domain PP4_RS01200 b77a5aaa7922583ed303538ed9ccd481 342 SMART SM00267 170 342 5.0E-52 T 22-04-2016 IPR000160 GGDEF domain PP4_RS01200 b77a5aaa7922583ed303538ed9ccd481 342 PANTHER PTHR10799:SF750 214 339 5.8E-25 T 22-04-2016 PP4_RS01200 b77a5aaa7922583ed303538ed9ccd481 342 PANTHER PTHR10799:SF750 44 159 5.8E-25 T 22-04-2016 PP4_RS01200 b77a5aaa7922583ed303538ed9ccd481 342 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 177 339 3.5E-44 T 22-04-2016 IPR000160 GGDEF domain PP4_RS01200 b77a5aaa7922583ed303538ed9ccd481 342 SUPERFAMILY SSF55785 58 172 1.69E-19 T 22-04-2016 IPR000014 PAS domain PP4_RS01200 b77a5aaa7922583ed303538ed9ccd481 342 PANTHER PTHR10799 214 339 5.8E-25 T 22-04-2016 PP4_RS01200 b77a5aaa7922583ed303538ed9ccd481 342 PANTHER PTHR10799 44 159 5.8E-25 T 22-04-2016 PP4_RS01200 b77a5aaa7922583ed303538ed9ccd481 342 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 50 177 2.4E-12 T 22-04-2016 IPR000014 PAS domain PP4_RS01200 b77a5aaa7922583ed303538ed9ccd481 342 Pfam PF08447 PAS fold 77 164 1.8E-19 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 PP4_RS01200 b77a5aaa7922583ed303538ed9ccd481 342 Gene3D G3DSA:3.30.70.270 183 340 5.5E-51 T 22-04-2016 PP4_RS10770 62c814e01eba7c64dbf71627fe6737a2 698 SUPERFAMILY SSF55785 141 263 3.54E-11 T 22-04-2016 IPR000014 PAS domain PP4_RS10770 62c814e01eba7c64dbf71627fe6737a2 698 Gene3D G3DSA:3.30.450.20 143 264 5.0E-14 T 22-04-2016 PP4_RS10770 62c814e01eba7c64dbf71627fe6737a2 698 Pfam PF00563 EAL domain 454 684 3.0E-70 T 22-04-2016 IPR001633 EAL domain PP4_RS10770 62c814e01eba7c64dbf71627fe6737a2 698 Pfam PF13426 PAS domain 22 124 3.3E-9 T 22-04-2016 IPR000014 PAS domain PP4_RS10770 62c814e01eba7c64dbf71627fe6737a2 698 SMART SM00052 447 689 2.8E-106 T 22-04-2016 IPR001633 EAL domain PP4_RS10770 62c814e01eba7c64dbf71627fe6737a2 698 PANTHER PTHR10799:SF774 8 132 1.2E-87 T 22-04-2016 PP4_RS10770 62c814e01eba7c64dbf71627fe6737a2 698 PANTHER PTHR10799:SF774 662 681 1.2E-87 T 22-04-2016 PP4_RS10770 62c814e01eba7c64dbf71627fe6737a2 698 PANTHER PTHR10799:SF774 309 527 1.2E-87 T 22-04-2016 PP4_RS10770 62c814e01eba7c64dbf71627fe6737a2 698 SUPERFAMILY SSF55073 281 437 4.32E-51 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS10770 62c814e01eba7c64dbf71627fe6737a2 698 Pfam PF08448 PAS fold 159 265 8.1E-10 T 22-04-2016 IPR013656 PAS fold-4 PP4_RS10770 62c814e01eba7c64dbf71627fe6737a2 698 SMART SM00267 265 437 3.7E-67 T 22-04-2016 IPR000160 GGDEF domain PP4_RS10770 62c814e01eba7c64dbf71627fe6737a2 698 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 152 269 1.3E-5 T 22-04-2016 IPR000014 PAS domain PP4_RS10770 62c814e01eba7c64dbf71627fe6737a2 698 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 10 132 1.1E-15 T 22-04-2016 IPR000014 PAS domain PP4_RS10770 62c814e01eba7c64dbf71627fe6737a2 698 SUPERFAMILY SSF141868 452 693 2.62E-87 T 22-04-2016 IPR001633 EAL domain PP4_RS10770 62c814e01eba7c64dbf71627fe6737a2 698 Gene3D G3DSA:3.30.70.270 277 441 2.3E-59 T 22-04-2016 PP4_RS10770 62c814e01eba7c64dbf71627fe6737a2 698 PANTHER PTHR10799 8 132 1.2E-87 T 22-04-2016 PP4_RS10770 62c814e01eba7c64dbf71627fe6737a2 698 PANTHER PTHR10799 662 681 1.2E-87 T 22-04-2016 PP4_RS10770 62c814e01eba7c64dbf71627fe6737a2 698 PANTHER PTHR10799 309 527 1.2E-87 T 22-04-2016 PP4_RS10770 62c814e01eba7c64dbf71627fe6737a2 698 Gene3D G3DSA:3.30.450.20 22 124 6.0E-16 T 22-04-2016 PP4_RS10770 62c814e01eba7c64dbf71627fe6737a2 698 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 273 436 6.1E-45 T 22-04-2016 IPR000160 GGDEF domain PP4_RS10770 62c814e01eba7c64dbf71627fe6737a2 698 Pfam PF00990 Diguanylate cyclase, GGDEF domain 276 433 7.9E-51 T 22-04-2016 IPR000160 GGDEF domain PP4_RS10770 62c814e01eba7c64dbf71627fe6737a2 698 SUPERFAMILY SSF55785 22 132 1.4E-19 T 22-04-2016 IPR000014 PAS domain PP4_RS10770 62c814e01eba7c64dbf71627fe6737a2 698 Gene3D G3DSA:3.20.20.450 451 692 2.5E-94 T 22-04-2016 IPR001633 EAL domain PP4_RS10770 62c814e01eba7c64dbf71627fe6737a2 698 SMART SM00091 151 218 7.5E-7 T 22-04-2016 IPR000014 PAS domain PP4_RS10770 62c814e01eba7c64dbf71627fe6737a2 698 SMART SM00091 9 76 0.24 T 22-04-2016 IPR000014 PAS domain PP4_RS05340 e707dac7694d5987bcbe1a6d09837faf 338 PANTHER PTHR11203:SF35 8 211 4.7E-74 T 22-04-2016 PP4_RS05340 e707dac7694d5987bcbe1a6d09837faf 338 PANTHER PTHR11203 8 211 4.7E-74 T 22-04-2016 PP4_RS05340 e707dac7694d5987bcbe1a6d09837faf 338 TIGRFAM TIGR04122 Xnuc_lig_assoc: putative exonuclease, DNA ligase-associated 4 328 3.4E-148 T 22-04-2016 IPR026360 Putative exonuclease, DNA ligase-associated PP4_RS05340 e707dac7694d5987bcbe1a6d09837faf 338 SUPERFAMILY SSF56281 10 327 5.1E-58 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS05340 e707dac7694d5987bcbe1a6d09837faf 338 Gene3D G3DSA:3.60.15.10 24 138 6.3E-13 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS08065 53a5a98ddaa37a93cbc60b0693f5be2e 335 SUPERFAMILY SSF51556 28 330 4.81E-23 T 22-04-2016 IPR032466 Metal-dependent hydrolase PP4_RS08065 53a5a98ddaa37a93cbc60b0693f5be2e 335 Gene3D G3DSA:3.20.20.140 26 331 2.6E-31 T 22-04-2016 PP4_RS08065 53a5a98ddaa37a93cbc60b0693f5be2e 335 Pfam PF04909 Amidohydrolase 28 329 1.8E-14 T 22-04-2016 IPR006680 Amidohydrolase-related GO:0016787 PP4_RS21370 8f16d59a28e738fd1c3ebed6cc7158bc 298 TIGRFAM TIGR02225 recomb_XerD: tyrosine recombinase XerD 10 297 6.9E-117 T 22-04-2016 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 PP4_RS21370 8f16d59a28e738fd1c3ebed6cc7158bc 298 Gene3D G3DSA:1.10.150.130 7 100 1.6E-27 T 22-04-2016 IPR023109 Integrase/recombinase, N-terminal PP4_RS21370 8f16d59a28e738fd1c3ebed6cc7158bc 298 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 9 91 3.7E-20 T 22-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 PP4_RS21370 8f16d59a28e738fd1c3ebed6cc7158bc 298 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 5 298 30.743 T 22-04-2016 IPR023009 Tyrosine recombinase XerC/XerD PP4_RS21370 8f16d59a28e738fd1c3ebed6cc7158bc 298 PANTHER PTHR30349 1 297 5.2E-121 T 22-04-2016 PP4_RS21370 8f16d59a28e738fd1c3ebed6cc7158bc 298 SUPERFAMILY SSF56349 8 289 4.41E-59 T 22-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 PP4_RS21370 8f16d59a28e738fd1c3ebed6cc7158bc 298 Gene3D G3DSA:1.10.443.10 113 289 3.2E-59 T 22-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 PP4_RS21370 8f16d59a28e738fd1c3ebed6cc7158bc 298 PANTHER PTHR30349:SF5 1 297 5.2E-121 T 22-04-2016 PP4_RS21370 8f16d59a28e738fd1c3ebed6cc7158bc 298 Pfam PF00589 Phage integrase family 113 284 1.3E-53 T 22-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 PP4_RS21370 8f16d59a28e738fd1c3ebed6cc7158bc 298 Hamap MF_01807 Tyrosine recombinase XerD [xerD]. 5 298 64.042 T 22-04-2016 IPR011932 Tyrosine recombinase XerD GO:0006310|GO:0009009 PP4_RS19910 42e7aa9827690b2e22baf872b8230e4b 320 Gene3D G3DSA:3.40.50.1820 36 285 2.1E-35 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS19910 42e7aa9827690b2e22baf872b8230e4b 320 Pfam PF12146 Serine aminopeptidase, S33 78 281 8.2E-13 T 22-04-2016 IPR022742 Serine aminopeptidase, S33 PP4_RS19910 42e7aa9827690b2e22baf872b8230e4b 320 PANTHER PTHR10992 80 281 1.5E-15 T 22-04-2016 PP4_RS19910 42e7aa9827690b2e22baf872b8230e4b 320 SUPERFAMILY SSF53474 24 173 5.08E-33 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS19910 42e7aa9827690b2e22baf872b8230e4b 320 SUPERFAMILY SSF53474 234 293 5.08E-33 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 Gene3D G3DSA:3.40.190.10 137 222 8.4E-5 T 22-04-2016 PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 Gene3D G3DSA:3.40.190.10 380 474 9.3E-10 T 22-04-2016 PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 SUPERFAMILY SSF55874 654 822 3.41E-40 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 Pfam PF01627 Hpt domain 997 1076 5.9E-8 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 Gene3D G3DSA:1.20.120.160 976 1083 2.1E-11 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 Gene3D G3DSA:3.40.50.2300 844 965 1.4E-35 T 22-04-2016 PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 SMART SM00448 846 962 6.7E-29 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 62 272 3.1E-25 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 302 518 3.3E-32 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 Gene3D G3DSA:3.30.565.10 665 829 4.1E-40 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 SMART SM00062 55 276 6.9E-30 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 SMART SM00062 301 522 2.2E-39 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 SMART SM00388 598 664 7.8E-18 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 Gene3D G3DSA:3.40.190.10 53 136 2.1E-18 T 22-04-2016 PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 Gene3D G3DSA:3.40.190.10 299 379 1.4E-17 T 22-04-2016 PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 Gene3D G3DSA:3.40.190.10 236 273 2.1E-18 T 22-04-2016 PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 Gene3D G3DSA:3.40.190.10 482 519 1.4E-17 T 22-04-2016 PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 711 823 6.2E-22 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 SUPERFAMILY SSF47226 945 1076 3.66E-15 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 SUPERFAMILY SSF53850 294 523 1.9E-39 T 22-04-2016 PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 SUPERFAMILY SSF47384 582 665 1.8E-18 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 SUPERFAMILY SSF53850 56 273 1.32E-36 T 22-04-2016 PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 SMART SM00387 710 825 1.4E-30 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 Pfam PF00072 Response regulator receiver domain 848 961 1.3E-24 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 PANTHER PTHR24423 83 99 3.4E-137 T 22-04-2016 PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 PANTHER PTHR24423 578 962 3.4E-137 T 22-04-2016 PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 SUPERFAMILY SSF52172 845 968 4.84E-33 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 PRINTS PR00344 Bacterial sensor protein C-terminal signature 809 822 1.4E-10 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 PRINTS PR00344 Bacterial sensor protein C-terminal signature 752 766 1.4E-10 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 PRINTS PR00344 Bacterial sensor protein C-terminal signature 770 780 1.4E-10 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 PRINTS PR00344 Bacterial sensor protein C-terminal signature 785 803 1.4E-10 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 Pfam PF00512 His Kinase A (phospho-acceptor) domain 599 664 6.0E-15 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 PANTHER PTHR24423:SF382 83 99 3.4E-137 T 22-04-2016 PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 PANTHER PTHR24423:SF382 578 962 3.4E-137 T 22-04-2016 PP4_RS14225 4a02a0ed29ebc54486f39c3c04418a58 1089 Gene3D G3DSA:1.10.287.130 591 660 3.5E-13 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS19895 a32d3be7e3b2d50133e2be08652c42c8 178 SUPERFAMILY SSF51182 3 172 1.22E-29 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS19895 a32d3be7e3b2d50133e2be08652c42c8 178 Pfam PF03079 ARD/ARD' family 91 158 1.2E-9 T 22-04-2016 IPR004313 Acireductone dioxygenase ARD family GO:0010309|GO:0055114 KEGG: 00270+1.13.11.54|MetaCyc: PWY-4361|UniPathway: UPA00904 PP4_RS19895 a32d3be7e3b2d50133e2be08652c42c8 178 Gene3D G3DSA:2.60.120.10 10 171 1.4E-28 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS23920 5a95eeda65ac2ad68745a3e0721881c4 336 Gene3D G3DSA:3.40.50.720 168 283 7.1E-36 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS23920 5a95eeda65ac2ad68745a3e0721881c4 336 SUPERFAMILY SSF51735 137 310 1.35E-46 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS23920 5a95eeda65ac2ad68745a3e0721881c4 336 Gene3D G3DSA:3.90.180.10 2 167 3.3E-35 T 22-04-2016 IPR011032 GroES-like PP4_RS23920 5a95eeda65ac2ad68745a3e0721881c4 336 SMART SM00829 12 334 1.5E-14 T 22-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 PP4_RS23920 5a95eeda65ac2ad68745a3e0721881c4 336 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 30 90 4.1E-6 T 22-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 PP4_RS23920 5a95eeda65ac2ad68745a3e0721881c4 336 PANTHER PTHR11695:SF525 17 332 3.1E-122 T 22-04-2016 PP4_RS23920 5a95eeda65ac2ad68745a3e0721881c4 336 PANTHER PTHR11695 17 332 3.1E-122 T 22-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PP4_RS23920 5a95eeda65ac2ad68745a3e0721881c4 336 Pfam PF00107 Zinc-binding dehydrogenase 171 297 2.9E-30 T 22-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 PP4_RS23920 5a95eeda65ac2ad68745a3e0721881c4 336 SUPERFAMILY SSF50129 4 161 7.7E-32 T 22-04-2016 IPR011032 GroES-like PP4_RS11550 69ad57cef565799effb6abe00d22470c 335 PANTHER PTHR30273 8 329 1.2E-82 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS11550 69ad57cef565799effb6abe00d22470c 335 Pfam PF04773 FecR protein 127 210 8.5E-20 T 22-04-2016 IPR006860 FecR protein PP4_RS11550 69ad57cef565799effb6abe00d22470c 335 PANTHER PTHR30273:SF2 8 329 1.2E-82 T 22-04-2016 PP4_RS11550 69ad57cef565799effb6abe00d22470c 335 PIRSF PIRSF018266 5 328 1.6E-82 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS11550 69ad57cef565799effb6abe00d22470c 335 Pfam PF16220 Domain of unknown function (DUF4880) 16 56 1.2E-14 T 22-04-2016 IPR032623 FecR, N-terminal PP4_RS06640 5e4d173e046b7a2bf576845588d1fb94 452 Gene3D G3DSA:1.20.1600.10 17 426 5.4E-61 T 22-04-2016 PP4_RS06640 5e4d173e046b7a2bf576845588d1fb94 452 PANTHER PTHR30026:SF3 1 450 1.0E-70 T 22-04-2016 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 PP4_RS06640 5e4d173e046b7a2bf576845588d1fb94 452 SUPERFAMILY SSF56954 23 431 3.14E-78 T 22-04-2016 PP4_RS06640 5e4d173e046b7a2bf576845588d1fb94 452 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 21 432 1.9E-90 T 22-04-2016 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 PP4_RS06640 5e4d173e046b7a2bf576845588d1fb94 452 PANTHER PTHR30026 1 450 1.0E-70 T 22-04-2016 PP4_RS06640 5e4d173e046b7a2bf576845588d1fb94 452 Pfam PF02321 Outer membrane efflux protein 27 212 4.7E-16 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PP4_RS06640 5e4d173e046b7a2bf576845588d1fb94 452 Pfam PF02321 Outer membrane efflux protein 237 422 2.5E-28 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PP4_RS07715 c00a7640712662a4394f99a57f6f6dd3 175 Pfam PF05751 FixH 12 153 7.8E-41 T 22-04-2016 IPR008620 Nitrogen fixation protein FixH PP4_RS26590 186203bddf576fc68335f85ea98471be 149 Pfam PF01878 EVE domain 2 147 8.2E-52 T 22-04-2016 IPR002740 EVE domain PP4_RS26590 186203bddf576fc68335f85ea98471be 149 PANTHER PTHR14087 1 148 1.0E-75 T 22-04-2016 PP4_RS26590 186203bddf576fc68335f85ea98471be 149 SUPERFAMILY SSF88697 1 148 1.66E-57 T 22-04-2016 IPR015947 PUA-like domain PP4_RS26590 186203bddf576fc68335f85ea98471be 149 Gene3D G3DSA:3.10.590.10 1 148 6.0E-27 T 22-04-2016 IPR002740 EVE domain PP4_RS20410 1934c73a46eb97669da0c9c2952b2db9 283 PANTHER PTHR30193 3 283 1.9E-74 T 22-04-2016 PP4_RS20410 1934c73a46eb97669da0c9c2952b2db9 283 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 277 1.1E-10 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS20410 1934c73a46eb97669da0c9c2952b2db9 283 PANTHER PTHR30193:SF20 3 283 1.9E-74 T 22-04-2016 PP4_RS20410 1934c73a46eb97669da0c9c2952b2db9 283 SUPERFAMILY SSF161098 11 280 4.49E-45 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS20410 1934c73a46eb97669da0c9c2952b2db9 283 Gene3D G3DSA:1.10.3720.10 18 279 1.0E-41 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS21450 f0e59ffd9baf003a515c957a38a0f20c 185 PANTHER PTHR22769 1 180 8.7E-77 T 22-04-2016 PP4_RS21450 f0e59ffd9baf003a515c957a38a0f20c 185 Gene3D G3DSA:2.20.70.10 1 35 2.1E-20 T 22-04-2016 PP4_RS21450 f0e59ffd9baf003a515c957a38a0f20c 185 Gene3D G3DSA:3.90.79.10 36 162 1.3E-29 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PP4_RS21450 f0e59ffd9baf003a515c957a38a0f20c 185 PANTHER PTHR22769:SF17 1 180 8.7E-77 T 22-04-2016 PP4_RS21450 f0e59ffd9baf003a515c957a38a0f20c 185 Pfam PF14803 Nudix N-terminal 2 35 5.5E-18 T 22-04-2016 IPR029401 Nudix hydrolase, N-terminal KEGG: 00230+3.6.1.-+3.6.1.13|KEGG: 00332+3.6.1.-|KEGG: 00740+3.6.1.18|KEGG: 00790+3.6.1.- PP4_RS21450 f0e59ffd9baf003a515c957a38a0f20c 185 Pfam PF00293 NUDIX domain 40 141 3.3E-12 T 22-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 PP4_RS21450 f0e59ffd9baf003a515c957a38a0f20c 185 SUPERFAMILY SSF55811 2 162 5.01E-36 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PP4_RS09690 504d5c2be3feba35d111f68085455ec8 340 Gene3D G3DSA:3.40.50.2300 54 173 4.4E-51 T 22-04-2016 PP4_RS09690 504d5c2be3feba35d111f68085455ec8 340 SUPERFAMILY SSF47413 1 59 1.92E-16 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS09690 504d5c2be3feba35d111f68085455ec8 340 Pfam PF13377 Periplasmic binding protein-like domain 168 329 3.2E-41 T 22-04-2016 PP4_RS09690 504d5c2be3feba35d111f68085455ec8 340 Gene3D G3DSA:1.10.260.40 2 53 3.3E-23 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS09690 504d5c2be3feba35d111f68085455ec8 340 Gene3D G3DSA:3.40.50.2300 174 306 5.8E-53 T 22-04-2016 PP4_RS09690 504d5c2be3feba35d111f68085455ec8 340 SUPERFAMILY SSF53822 61 333 5.65E-89 T 22-04-2016 IPR028082 Periplasmic binding protein-like I PP4_RS09690 504d5c2be3feba35d111f68085455ec8 340 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 13 23 5.1E-5 T 22-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PP4_RS09690 504d5c2be3feba35d111f68085455ec8 340 PRINTS PR00036 LacI bacterial regulatory protein HTH signature 3 13 5.1E-5 T 22-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PP4_RS09690 504d5c2be3feba35d111f68085455ec8 340 SMART SM00354 1 71 4.4E-31 T 22-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PP4_RS09690 504d5c2be3feba35d111f68085455ec8 340 PANTHER PTHR30146 1 333 1.7E-134 T 22-04-2016 PP4_RS09690 504d5c2be3feba35d111f68085455ec8 340 Pfam PF00356 Bacterial regulatory proteins, lacI family 3 48 2.2E-17 T 22-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PP4_RS09690 504d5c2be3feba35d111f68085455ec8 340 PANTHER PTHR30146:SF30 1 333 1.7E-134 T 22-04-2016 PP4_RS06305 84aedad89f4aa082eb7747d000fe6518 324 TIGRFAM TIGR01139 cysK: cysteine synthase A 10 313 1.7E-137 T 22-04-2016 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936|UniPathway: UPA00136 PP4_RS06305 84aedad89f4aa082eb7747d000fe6518 324 PANTHER PTHR10314 3 324 8.8E-157 T 22-04-2016 PP4_RS06305 84aedad89f4aa082eb7747d000fe6518 324 TIGRFAM TIGR01136 cysKM: cysteine synthase 10 313 5.8E-131 T 22-04-2016 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936|UniPathway: UPA00136 PP4_RS06305 84aedad89f4aa082eb7747d000fe6518 324 Gene3D G3DSA:3.40.50.1100 151 320 5.3E-73 T 22-04-2016 PP4_RS06305 84aedad89f4aa082eb7747d000fe6518 324 Gene3D G3DSA:3.40.50.1100 3 42 5.3E-73 T 22-04-2016 PP4_RS06305 84aedad89f4aa082eb7747d000fe6518 324 ProSitePatterns PS00901 Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 33 51 - T 22-04-2016 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site GO:0006535 PP4_RS06305 84aedad89f4aa082eb7747d000fe6518 324 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 11 302 1.3E-67 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PP4_RS06305 84aedad89f4aa082eb7747d000fe6518 324 Gene3D G3DSA:3.40.50.1100 43 141 1.7E-39 T 22-04-2016 PP4_RS06305 84aedad89f4aa082eb7747d000fe6518 324 SUPERFAMILY SSF53686 7 312 4.06E-100 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PP4_RS06305 84aedad89f4aa082eb7747d000fe6518 324 PANTHER PTHR10314:SF110 3 324 8.8E-157 T 22-04-2016 PP4_RS21555 39ffe229a6825ba2222e4e8261129194 485 Gene3D G3DSA:1.10.530.10 258 395 3.4E-41 T 22-04-2016 PP4_RS21555 39ffe229a6825ba2222e4e8261129194 485 Gene3D G3DSA:1.10.530.10 430 451 3.4E-41 T 22-04-2016 PP4_RS21555 39ffe229a6825ba2222e4e8261129194 485 Pfam PF01464 Transglycosylase SLT domain 293 401 2.1E-22 T 22-04-2016 IPR008258 Transglycosylase SLT domain 1 PP4_RS21555 39ffe229a6825ba2222e4e8261129194 485 Gene3D G3DSA:3.40.190.10 39 120 5.4E-18 T 22-04-2016 PP4_RS21555 39ffe229a6825ba2222e4e8261129194 485 Gene3D G3DSA:3.40.190.10 225 257 5.4E-18 T 22-04-2016 PP4_RS21555 39ffe229a6825ba2222e4e8261129194 485 SUPERFAMILY SSF53850 38 266 9.51E-38 T 22-04-2016 PP4_RS21555 39ffe229a6825ba2222e4e8261129194 485 PANTHER PTHR21666 272 482 6.5E-114 T 22-04-2016 PP4_RS21555 39ffe229a6825ba2222e4e8261129194 485 SMART SM00062 42 267 1.6E-35 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS21555 39ffe229a6825ba2222e4e8261129194 485 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 310 338 - T 22-04-2016 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 PP4_RS21555 39ffe229a6825ba2222e4e8261129194 485 Hamap MF_02016 Membrane-bound lytic murein transglycosylase F [mltF]. 11 468 45.65 T 22-04-2016 IPR023703 Membrane-bound lytic murein transglycosylase F GO:0016837 PP4_RS21555 39ffe229a6825ba2222e4e8261129194 485 SUPERFAMILY SSF53955 245 398 8.84E-33 T 22-04-2016 IPR023346 Lysozyme-like domain PP4_RS21555 39ffe229a6825ba2222e4e8261129194 485 SUPERFAMILY SSF53955 433 449 8.84E-33 T 22-04-2016 IPR023346 Lysozyme-like domain PP4_RS21555 39ffe229a6825ba2222e4e8261129194 485 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 44 266 1.1E-31 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS21555 39ffe229a6825ba2222e4e8261129194 485 Gene3D G3DSA:3.40.190.10 121 205 6.2E-10 T 22-04-2016 PP4_RS21555 39ffe229a6825ba2222e4e8261129194 485 PANTHER PTHR21666:SF215 272 482 6.5E-114 T 22-04-2016 IPR023703 Membrane-bound lytic murein transglycosylase F GO:0016837 PP4_RS22015 83edad15dd106dc5c7e787258a6c4d05 203 TIGRFAM TIGR00172 maf: septum formation protein Maf 3 182 9.4E-54 T 22-04-2016 IPR003697 Maf-like protein GO:0005737 PP4_RS22015 83edad15dd106dc5c7e787258a6c4d05 203 Pfam PF02545 Maf-like protein 4 183 1.3E-56 T 22-04-2016 IPR003697 Maf-like protein GO:0005737 PP4_RS22015 83edad15dd106dc5c7e787258a6c4d05 203 PANTHER PTHR11746 123 187 3.1E-12 T 22-04-2016 PP4_RS22015 83edad15dd106dc5c7e787258a6c4d05 203 Gene3D G3DSA:3.90.950.10 2 187 8.6E-70 T 22-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like PP4_RS22015 83edad15dd106dc5c7e787258a6c4d05 203 SUPERFAMILY SSF52972 2 183 1.18E-61 T 22-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like PP4_RS22015 83edad15dd106dc5c7e787258a6c4d05 203 PIRSF PIRSF006305 1 192 1.4E-50 T 22-04-2016 IPR003697 Maf-like protein GO:0005737 PP4_RS22015 83edad15dd106dc5c7e787258a6c4d05 203 Hamap MF_00528 Septum formation protein Maf [maf]. 3 189 33.428 T 22-04-2016 IPR003697 Maf-like protein GO:0005737 PP4_RS21220 756d9f254907d24b826f9fbdfadd3343 307 PANTHER PTHR12277 30 305 4.2E-38 T 22-04-2016 PP4_RS21220 756d9f254907d24b826f9fbdfadd3343 307 SUPERFAMILY SSF53474 40 284 2.72E-42 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS21220 756d9f254907d24b826f9fbdfadd3343 307 PRINTS PR00111 Alpha/beta hydrolase fold signature 150 163 5.7E-5 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS21220 756d9f254907d24b826f9fbdfadd3343 307 PRINTS PR00111 Alpha/beta hydrolase fold signature 103 118 5.7E-5 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS21220 756d9f254907d24b826f9fbdfadd3343 307 Pfam PF12146 Serine aminopeptidase, S33 75 178 6.2E-14 T 22-04-2016 IPR022742 Serine aminopeptidase, S33 PP4_RS21220 756d9f254907d24b826f9fbdfadd3343 307 Gene3D G3DSA:3.40.50.1820 49 283 1.5E-39 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS21220 756d9f254907d24b826f9fbdfadd3343 307 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 79 87 6.8E-5 T 22-04-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 PP4_RS21220 756d9f254907d24b826f9fbdfadd3343 307 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 106 117 6.8E-5 T 22-04-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 PP4_RS21220 756d9f254907d24b826f9fbdfadd3343 307 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 150 164 6.8E-5 T 22-04-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 PP4_RS22460 0a8630296a4e97ae937e3a987f61c2c3 187 PANTHER PTHR13256:SF43 13 181 4.4E-48 T 22-04-2016 PP4_RS22460 0a8630296a4e97ae937e3a987f61c2c3 187 PANTHER PTHR13256 13 181 4.4E-48 T 22-04-2016 PP4_RS22460 0a8630296a4e97ae937e3a987f61c2c3 187 Pfam PF13302 Acetyltransferase (GNAT) domain 17 156 2.4E-31 T 22-04-2016 IPR000182 GNAT domain GO:0008080 PP4_RS22460 0a8630296a4e97ae937e3a987f61c2c3 187 Gene3D G3DSA:3.40.630.30 11 181 1.3E-49 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS22460 0a8630296a4e97ae937e3a987f61c2c3 187 SUPERFAMILY SSF55729 11 181 9.89E-46 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS14345 51c3c82bb305db52b426c9160fbaa50a 699 Pfam PF00512 His Kinase A (phospho-acceptor) domain 330 393 4.7E-9 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS14345 51c3c82bb305db52b426c9160fbaa50a 699 SMART SM00388 328 396 1.2E-7 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS14345 51c3c82bb305db52b426c9160fbaa50a 699 SUPERFAMILY SSF52172 578 696 9.11E-22 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS14345 51c3c82bb305db52b426c9160fbaa50a 699 Gene3D G3DSA:3.40.50.2300 576 698 4.9E-28 T 22-04-2016 PP4_RS14345 51c3c82bb305db52b426c9160fbaa50a 699 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 438 556 2.2E-14 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS14345 51c3c82bb305db52b426c9160fbaa50a 699 Pfam PF08447 PAS fold 225 292 5.8E-12 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 PP4_RS14345 51c3c82bb305db52b426c9160fbaa50a 699 PRINTS PR00344 Bacterial sensor protein C-terminal signature 488 502 3.7E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS14345 51c3c82bb305db52b426c9160fbaa50a 699 PRINTS PR00344 Bacterial sensor protein C-terminal signature 506 516 3.7E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS14345 51c3c82bb305db52b426c9160fbaa50a 699 PRINTS PR00344 Bacterial sensor protein C-terminal signature 543 556 3.7E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS14345 51c3c82bb305db52b426c9160fbaa50a 699 PRINTS PR00344 Bacterial sensor protein C-terminal signature 519 537 3.7E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS14345 51c3c82bb305db52b426c9160fbaa50a 699 SUPERFAMILY SSF55874 387 560 1.23E-30 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS14345 51c3c82bb305db52b426c9160fbaa50a 699 SMART SM00091 200 266 1.6E-9 T 22-04-2016 IPR000014 PAS domain PP4_RS14345 51c3c82bb305db52b426c9160fbaa50a 699 PANTHER PTHR24423:SF438 146 689 6.3E-124 T 22-04-2016 PP4_RS14345 51c3c82bb305db52b426c9160fbaa50a 699 SUPERFAMILY SSF55785 206 309 2.09E-18 T 22-04-2016 IPR000014 PAS domain PP4_RS14345 51c3c82bb305db52b426c9160fbaa50a 699 Gene3D G3DSA:3.30.450.20 202 332 9.8E-20 T 22-04-2016 PP4_RS14345 51c3c82bb305db52b426c9160fbaa50a 699 PANTHER PTHR24423 146 689 6.3E-124 T 22-04-2016 PP4_RS14345 51c3c82bb305db52b426c9160fbaa50a 699 Gene3D G3DSA:3.30.565.10 396 559 8.1E-28 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS14345 51c3c82bb305db52b426c9160fbaa50a 699 SUPERFAMILY SSF47384 317 393 2.16E-10 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS14345 51c3c82bb305db52b426c9160fbaa50a 699 SMART SM00387 437 559 7.4E-21 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS14345 51c3c82bb305db52b426c9160fbaa50a 699 SMART SM00448 579 692 1.5E-21 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS14345 51c3c82bb305db52b426c9160fbaa50a 699 Gene3D G3DSA:1.10.287.130 333 392 4.3E-6 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS14345 51c3c82bb305db52b426c9160fbaa50a 699 Pfam PF00072 Response regulator receiver domain 582 689 2.5E-14 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS14345 51c3c82bb305db52b426c9160fbaa50a 699 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 202 311 2.3E-13 T 22-04-2016 IPR000014 PAS domain PP4_RS22555 ce71480f25c5fb4525f303ce8bd35ba7 387 PANTHER PTHR30469:SF0 1 381 3.7E-127 T 22-04-2016 PP4_RS22555 ce71480f25c5fb4525f303ce8bd35ba7 387 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 42 370 7.4E-77 T 22-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 PP4_RS22555 ce71480f25c5fb4525f303ce8bd35ba7 387 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 68 290 1.9E-15 T 22-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PP4_RS22555 ce71480f25c5fb4525f303ce8bd35ba7 387 SUPERFAMILY SSF111369 57 296 1.31E-55 T 22-04-2016 PP4_RS22555 ce71480f25c5fb4525f303ce8bd35ba7 387 Gene3D G3DSA:2.40.50.100 67 100 6.6E-22 T 22-04-2016 PP4_RS22555 ce71480f25c5fb4525f303ce8bd35ba7 387 Gene3D G3DSA:2.40.50.100 175 206 6.6E-22 T 22-04-2016 PP4_RS22555 ce71480f25c5fb4525f303ce8bd35ba7 387 PANTHER PTHR30469 1 381 3.7E-127 T 22-04-2016 PP4_RS23805 b7672dae9124e663e80f8ee4f109bcd1 936 Pfam PF01565 FAD binding domain 41 175 8.5E-34 T 22-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 PP4_RS23805 b7672dae9124e663e80f8ee4f109bcd1 936 PANTHER PTHR11748:SF65 220 562 1.3E-292 T 22-04-2016 PP4_RS23805 b7672dae9124e663e80f8ee4f109bcd1 936 PANTHER PTHR11748:SF65 4 181 1.3E-292 T 22-04-2016 PP4_RS23805 b7672dae9124e663e80f8ee4f109bcd1 936 Gene3D G3DSA:3.30.43.10 3 89 4.0E-15 T 22-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 PP4_RS23805 b7672dae9124e663e80f8ee4f109bcd1 936 Pfam PF02913 FAD linked oxidases, C-terminal domain 267 513 2.0E-59 T 22-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 PP4_RS23805 b7672dae9124e663e80f8ee4f109bcd1 936 Gene3D G3DSA:1.10.45.10 476 505 1.9E-8 T 22-04-2016 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 PP4_RS23805 b7672dae9124e663e80f8ee4f109bcd1 936 Gene3D G3DSA:1.10.1060.10 506 625 1.9E-19 T 22-04-2016 PP4_RS23805 b7672dae9124e663e80f8ee4f109bcd1 936 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 540 551 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PP4_RS23805 b7672dae9124e663e80f8ee4f109bcd1 936 Pfam PF13183 4Fe-4S dicluster domain 537 608 7.0E-10 T 22-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PP4_RS23805 b7672dae9124e663e80f8ee4f109bcd1 936 Pfam PF02754 Cysteine-rich domain 833 893 0.14 T 22-04-2016 IPR004017 Cysteine-rich domain PP4_RS23805 b7672dae9124e663e80f8ee4f109bcd1 936 Pfam PF02754 Cysteine-rich domain 714 795 0.0037 T 22-04-2016 IPR004017 Cysteine-rich domain PP4_RS23805 b7672dae9124e663e80f8ee4f109bcd1 936 Gene3D G3DSA:3.30.465.10 97 264 2.0E-18 T 22-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 PP4_RS23805 b7672dae9124e663e80f8ee4f109bcd1 936 SUPERFAMILY SSF55103 269 522 1.05E-55 T 22-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 PP4_RS23805 b7672dae9124e663e80f8ee4f109bcd1 936 PANTHER PTHR11748 220 562 1.3E-292 T 22-04-2016 PP4_RS23805 b7672dae9124e663e80f8ee4f109bcd1 936 PANTHER PTHR11748 4 181 1.3E-292 T 22-04-2016 PP4_RS23805 b7672dae9124e663e80f8ee4f109bcd1 936 SUPERFAMILY SSF46548 493 623 1.74E-21 T 22-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 PP4_RS23805 b7672dae9124e663e80f8ee4f109bcd1 936 SUPERFAMILY SSF56176 6 264 3.97E-58 T 22-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 PP4_RS21235 a693bd512e3965bfd237397af2b93f5b 234 PANTHER PTHR30055 20 231 1.0E-24 T 22-04-2016 PP4_RS21235 a693bd512e3965bfd237397af2b93f5b 234 Gene3D G3DSA:1.10.357.10 30 232 7.5E-30 T 22-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PP4_RS21235 a693bd512e3965bfd237397af2b93f5b 234 SUPERFAMILY SSF46689 28 99 4.21E-14 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS21235 a693bd512e3965bfd237397af2b93f5b 234 Pfam PF00440 Bacterial regulatory proteins, tetR family 36 79 1.0E-5 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS21235 a693bd512e3965bfd237397af2b93f5b 234 PANTHER PTHR30055:SF2 20 231 1.0E-24 T 22-04-2016 PP4_RS27215 fa0c68d292c2be4bd270bd057a953edf 509 SUPERFAMILY SSF46785 18 95 2.73E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS27215 fa0c68d292c2be4bd270bd057a953edf 509 SUPERFAMILY SSF53383 147 508 1.11E-83 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS27215 fa0c68d292c2be4bd270bd057a953edf 509 PANTHER PTHR11751 148 509 1.4E-117 T 22-04-2016 PP4_RS27215 fa0c68d292c2be4bd270bd057a953edf 509 Pfam PF00155 Aminotransferase class I and II 175 419 1.8E-19 T 22-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PP4_RS27215 fa0c68d292c2be4bd270bd057a953edf 509 PANTHER PTHR11751:SF353 148 509 1.4E-117 T 22-04-2016 PP4_RS27215 fa0c68d292c2be4bd270bd057a953edf 509 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 60 8.8E-5 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS27215 fa0c68d292c2be4bd270bd057a953edf 509 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 60 76 8.8E-5 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS27215 fa0c68d292c2be4bd270bd057a953edf 509 Pfam PF00392 Bacterial regulatory proteins, gntR family 23 86 1.6E-15 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS27215 fa0c68d292c2be4bd270bd057a953edf 509 SMART SM00345 27 86 8.9E-17 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS27215 fa0c68d292c2be4bd270bd057a953edf 509 Gene3D G3DSA:1.10.10.10 19 90 1.4E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS27215 fa0c68d292c2be4bd270bd057a953edf 509 Gene3D G3DSA:3.40.640.10 178 393 2.3E-62 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS25040 fbe8a713e8698411049ef8678ec5ccd5 203 PANTHER PTHR30506 1 203 3.1E-121 T 22-04-2016 PP4_RS25040 fbe8a713e8698411049ef8678ec5ccd5 203 PANTHER PTHR30506:SF2 1 203 3.1E-121 T 22-04-2016 PP4_RS25040 fbe8a713e8698411049ef8678ec5ccd5 203 Pfam PF03458 UPF0126 domain 90 161 5.0E-20 T 22-04-2016 IPR005115 Uncharacterised domain UPF0126 PP4_RS25040 fbe8a713e8698411049ef8678ec5ccd5 203 Pfam PF03458 UPF0126 domain 4 78 3.6E-20 T 22-04-2016 IPR005115 Uncharacterised domain UPF0126 PP4_RS08400 d9f1be3b0b8824f5c68a16795c0b0730 298 Gene3D G3DSA:3.40.190.10 180 263 2.4E-35 T 22-04-2016 PP4_RS08400 d9f1be3b0b8824f5c68a16795c0b0730 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 67 8.4E-21 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS08400 d9f1be3b0b8824f5c68a16795c0b0730 298 SUPERFAMILY SSF46785 6 82 5.9E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS08400 d9f1be3b0b8824f5c68a16795c0b0730 298 Gene3D G3DSA:3.40.190.10 97 179 6.4E-30 T 22-04-2016 PP4_RS08400 d9f1be3b0b8824f5c68a16795c0b0730 298 Gene3D G3DSA:1.10.10.10 4 82 2.7E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS08400 d9f1be3b0b8824f5c68a16795c0b0730 298 SUPERFAMILY SSF53850 95 295 8.14E-38 T 22-04-2016 PP4_RS08400 d9f1be3b0b8824f5c68a16795c0b0730 298 PANTHER PTHR30537:SF15 1 294 1.3E-120 T 22-04-2016 PP4_RS08400 d9f1be3b0b8824f5c68a16795c0b0730 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 6.1E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS08400 d9f1be3b0b8824f5c68a16795c0b0730 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 6.1E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS08400 d9f1be3b0b8824f5c68a16795c0b0730 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 6.1E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS08400 d9f1be3b0b8824f5c68a16795c0b0730 298 PANTHER PTHR30537 1 294 1.3E-120 T 22-04-2016 PP4_RS08400 d9f1be3b0b8824f5c68a16795c0b0730 298 Pfam PF03466 LysR substrate binding domain 95 293 8.8E-35 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS11520 98564ef02fbc59bbd6a75083ec042a3e 305 PANTHER PTHR31752 88 305 9.6E-42 T 22-04-2016 PP4_RS11520 98564ef02fbc59bbd6a75083ec042a3e 305 Pfam PF03547 Membrane transport protein 158 298 2.6E-11 T 22-04-2016 IPR004776 Auxin efflux carrier GO:0016021|GO:0055085 PP4_RS11520 98564ef02fbc59bbd6a75083ec042a3e 305 PANTHER PTHR31752:SF13 88 305 9.6E-42 T 22-04-2016 PP4_RS18335 581d672347188aa662a7d548a286511b 257 SUPERFAMILY SSF52317 4 247 1.22E-38 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS18335 581d672347188aa662a7d548a286511b 257 Gene3D G3DSA:3.40.50.880 4 246 6.4E-45 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS18335 581d672347188aa662a7d548a286511b 257 PANTHER PTHR11922:SF18 85 140 2.1E-51 T 22-04-2016 PP4_RS18335 581d672347188aa662a7d548a286511b 257 PANTHER PTHR11922:SF18 38 69 2.1E-51 T 22-04-2016 PP4_RS18335 581d672347188aa662a7d548a286511b 257 PANTHER PTHR11922:SF18 156 253 2.1E-51 T 22-04-2016 PP4_RS18335 581d672347188aa662a7d548a286511b 257 Pfam PF07722 Peptidase C26 5 223 6.3E-73 T 22-04-2016 IPR011697 Peptidase C26 GO:0006541|GO:0016787 PP4_RS18335 581d672347188aa662a7d548a286511b 257 PANTHER PTHR11922 85 140 2.1E-51 T 22-04-2016 PP4_RS18335 581d672347188aa662a7d548a286511b 257 PANTHER PTHR11922 38 69 2.1E-51 T 22-04-2016 PP4_RS18335 581d672347188aa662a7d548a286511b 257 PANTHER PTHR11922 156 253 2.1E-51 T 22-04-2016 PP4_RS21120 6cf5aa0310ad4ec9952d42b446220f61 69 SUPERFAMILY SSF50249 3 67 2.36E-23 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS21120 6cf5aa0310ad4ec9952d42b446220f61 69 PIRSF PIRSF002599 1 69 5.8E-23 T 22-04-2016 IPR012156 Cold shock, CspA GO:0003676 PP4_RS21120 6cf5aa0310ad4ec9952d42b446220f61 69 PRINTS PR00050 Cold shock protein signature 27 36 3.0E-16 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PP4_RS21120 6cf5aa0310ad4ec9952d42b446220f61 69 PRINTS PR00050 Cold shock protein signature 42 60 3.0E-16 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PP4_RS21120 6cf5aa0310ad4ec9952d42b446220f61 69 PRINTS PR00050 Cold shock protein signature 7 22 3.0E-16 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PP4_RS21120 6cf5aa0310ad4ec9952d42b446220f61 69 SMART SM00357 6 69 1.6E-24 T 22-04-2016 IPR011129 Cold shock protein GO:0003676 PP4_RS21120 6cf5aa0310ad4ec9952d42b446220f61 69 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 36 - T 22-04-2016 IPR019844 Cold-shock conserved site PP4_RS21120 6cf5aa0310ad4ec9952d42b446220f61 69 PANTHER PTHR11544 1 69 4.8E-37 T 22-04-2016 PP4_RS21120 6cf5aa0310ad4ec9952d42b446220f61 69 Pfam PF00313 'Cold-shock' DNA-binding domain 6 68 1.1E-26 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PP4_RS21120 6cf5aa0310ad4ec9952d42b446220f61 69 Gene3D G3DSA:2.40.50.140 5 67 1.9E-28 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS00945 bda938be58dbb4448f1081bac04e3dfb 247 Pfam PF04397 LytTr DNA-binding domain 148 244 5.5E-21 T 22-04-2016 IPR007492 LytTR DNA-binding domain GO:0003677 PP4_RS00945 bda938be58dbb4448f1081bac04e3dfb 247 SMART SM00850 147 245 4.1E-24 T 22-04-2016 IPR007492 LytTR DNA-binding domain GO:0003677 PP4_RS00945 bda938be58dbb4448f1081bac04e3dfb 247 Gene3D G3DSA:2.40.50.40 140 203 1.2E-10 T 22-04-2016 PP4_RS00945 bda938be58dbb4448f1081bac04e3dfb 247 PANTHER PTHR26402 1 121 5.3E-32 T 22-04-2016 PP4_RS00945 bda938be58dbb4448f1081bac04e3dfb 247 SMART SM00448 1 113 2.0E-24 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS00945 bda938be58dbb4448f1081bac04e3dfb 247 Gene3D G3DSA:3.40.50.2300 1 122 3.8E-29 T 22-04-2016 PP4_RS00945 bda938be58dbb4448f1081bac04e3dfb 247 PANTHER PTHR26402:SF579 1 121 5.3E-32 T 22-04-2016 PP4_RS00945 bda938be58dbb4448f1081bac04e3dfb 247 SUPERFAMILY SSF52172 1 125 4.84E-30 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS00945 bda938be58dbb4448f1081bac04e3dfb 247 Pfam PF00072 Response regulator receiver domain 3 113 2.2E-23 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS10665 da30b34ebb59337de75dfce42ec5c191 409 SUPERFAMILY SSF50621 274 408 9.77E-41 T 22-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 PP4_RS10665 da30b34ebb59337de75dfce42ec5c191 409 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 72 82 - T 22-04-2016 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PP4_RS10665 da30b34ebb59337de75dfce42ec5c191 409 PANTHER PTHR30511:SF0 38 409 1.1E-113 T 22-04-2016 PP4_RS10665 da30b34ebb59337de75dfce42ec5c191 409 Pfam PF00842 Alanine racemase, C-terminal domain 280 391 1.6E-28 T 22-04-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PP4_RS10665 da30b34ebb59337de75dfce42ec5c191 409 SUPERFAMILY SSF51419 48 270 3.93E-46 T 22-04-2016 IPR029066 PLP-binding barrel PP4_RS10665 da30b34ebb59337de75dfce42ec5c191 409 TIGRFAM TIGR00492 alr: alanine racemase 44 389 6.0E-69 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PP4_RS10665 da30b34ebb59337de75dfce42ec5c191 409 Gene3D G3DSA:3.20.20.10 51 260 2.2E-50 T 22-04-2016 IPR029066 PLP-binding barrel PP4_RS10665 da30b34ebb59337de75dfce42ec5c191 409 Pfam PF01168 Alanine racemase, N-terminal domain 49 270 5.4E-52 T 22-04-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PP4_RS10665 da30b34ebb59337de75dfce42ec5c191 409 SMART SM01005 280 408 1.4E-47 T 22-04-2016 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PP4_RS10665 da30b34ebb59337de75dfce42ec5c191 409 Gene3D G3DSA:2.40.37.10 261 408 1.7E-42 T 22-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 PP4_RS10665 da30b34ebb59337de75dfce42ec5c191 409 PRINTS PR00992 Alanine racemase signature 103 121 1.1E-35 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PP4_RS10665 da30b34ebb59337de75dfce42ec5c191 409 PRINTS PR00992 Alanine racemase signature 244 271 1.1E-35 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PP4_RS10665 da30b34ebb59337de75dfce42ec5c191 409 PRINTS PR00992 Alanine racemase signature 201 212 1.1E-35 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PP4_RS10665 da30b34ebb59337de75dfce42ec5c191 409 PRINTS PR00992 Alanine racemase signature 165 177 1.1E-35 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PP4_RS10665 da30b34ebb59337de75dfce42ec5c191 409 PRINTS PR00992 Alanine racemase signature 296 311 1.1E-35 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PP4_RS10665 da30b34ebb59337de75dfce42ec5c191 409 PRINTS PR00992 Alanine racemase signature 313 328 1.1E-35 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PP4_RS10665 da30b34ebb59337de75dfce42ec5c191 409 PRINTS PR00992 Alanine racemase signature 67 83 1.1E-35 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PP4_RS10665 da30b34ebb59337de75dfce42ec5c191 409 PRINTS PR00992 Alanine racemase signature 334 351 1.1E-35 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PP4_RS10665 da30b34ebb59337de75dfce42ec5c191 409 Hamap MF_01201 Alanine racemase. 41 408 26.02 T 22-04-2016 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PP4_RS10665 da30b34ebb59337de75dfce42ec5c191 409 PANTHER PTHR30511 38 409 1.1E-113 T 22-04-2016 PP4_RS05230 5fc557645e6f34286391be01b191aaab 224 PANTHER PTHR30231 16 221 1.0E-114 T 22-04-2016 PP4_RS05230 5fc557645e6f34286391be01b191aaab 224 TIGRFAM TIGR01298 RNaseT: ribonuclease T 22 220 6.9E-112 T 22-04-2016 IPR005987 Ribonuclease T GO:0004540|GO:0006396 PP4_RS05230 5fc557645e6f34286391be01b191aaab 224 SUPERFAMILY SSF53098 21 219 1.11E-55 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PP4_RS05230 5fc557645e6f34286391be01b191aaab 224 Gene3D G3DSA:3.30.420.10 22 220 1.6E-57 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PP4_RS05230 5fc557645e6f34286391be01b191aaab 224 Pfam PF00929 Exonuclease 32 206 1.7E-32 T 22-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III PP4_RS05230 5fc557645e6f34286391be01b191aaab 224 PANTHER PTHR30231:SF2 16 221 1.0E-114 T 22-04-2016 PP4_RS05230 5fc557645e6f34286391be01b191aaab 224 Hamap MF_00157 Ribonuclease T [rnt]. 1 224 108.746 T 22-04-2016 IPR005987 Ribonuclease T GO:0004540|GO:0006396 PP4_RS05230 5fc557645e6f34286391be01b191aaab 224 SMART SM00479 30 215 1.2E-22 T 22-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III PP4_RS21650 f3f78b709e301e75b7e7f138b81b2328 384 PANTHER PTHR24220:SF446 5 294 5.6E-192 T 22-04-2016 PP4_RS21650 f3f78b709e301e75b7e7f138b81b2328 384 SUPERFAMILY SSF50331 238 366 8.99E-28 T 22-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal PP4_RS21650 f3f78b709e301e75b7e7f138b81b2328 384 Pfam PF00005 ABC transporter 21 163 1.2E-32 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS21650 f3f78b709e301e75b7e7f138b81b2328 384 SMART SM00382 30 221 4.6E-12 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS21650 f3f78b709e301e75b7e7f138b81b2328 384 SUPERFAMILY SSF52540 4 245 5.18E-85 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS21650 f3f78b709e301e75b7e7f138b81b2328 384 PANTHER PTHR24220 5 294 5.6E-192 T 22-04-2016 PP4_RS21650 f3f78b709e301e75b7e7f138b81b2328 384 Pfam PF08402 TOBE domain 284 357 5.4E-9 T 22-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 PP4_RS21650 f3f78b709e301e75b7e7f138b81b2328 384 Gene3D G3DSA:2.40.50.100 351 366 3.4E-10 T 22-04-2016 PP4_RS21650 f3f78b709e301e75b7e7f138b81b2328 384 Gene3D G3DSA:2.40.50.100 241 288 3.4E-10 T 22-04-2016 PP4_RS21650 f3f78b709e301e75b7e7f138b81b2328 384 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS21650 f3f78b709e301e75b7e7f138b81b2328 384 Gene3D G3DSA:3.40.50.300 3 236 3.2E-78 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS21650 f3f78b709e301e75b7e7f138b81b2328 384 Gene3D G3DSA:2.40.50.140 289 350 1.2E-11 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS00580 72b57229142b156fa75d78569549321a 100 PANTHER PTHR40942 1 99 4.3E-45 T 22-04-2016 PP4_RS00580 72b57229142b156fa75d78569549321a 100 PANTHER PTHR40942:SF2 1 99 4.3E-45 T 22-04-2016 PP4_RS00580 72b57229142b156fa75d78569549321a 100 SUPERFAMILY SSF46626 21 96 2.23E-16 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS00580 72b57229142b156fa75d78569549321a 100 Gene3D G3DSA:1.10.760.10 20 95 1.1E-27 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS00580 72b57229142b156fa75d78569549321a 100 PRINTS PR00607 Class IE cytochrome C signature 30 41 2.4E-5 T 22-04-2016 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 PP4_RS00580 72b57229142b156fa75d78569549321a 100 PRINTS PR00607 Class IE cytochrome C signature 41 51 2.4E-5 T 22-04-2016 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 PP4_RS00580 72b57229142b156fa75d78569549321a 100 PRINTS PR00607 Class IE cytochrome C signature 69 81 2.4E-5 T 22-04-2016 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 PP4_RS00580 72b57229142b156fa75d78569549321a 100 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 20 94 1.9E-13 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS26725 84a4b14c1f06023634919b1bcecac2be 299 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 5 88 1.6E-22 T 22-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 PP4_RS26725 84a4b14c1f06023634919b1bcecac2be 299 Gene3D G3DSA:1.10.150.130 1 97 5.4E-28 T 22-04-2016 IPR023109 Integrase/recombinase, N-terminal PP4_RS26725 84a4b14c1f06023634919b1bcecac2be 299 Gene3D G3DSA:1.10.443.10 110 284 4.6E-50 T 22-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 PP4_RS26725 84a4b14c1f06023634919b1bcecac2be 299 SUPERFAMILY SSF56349 104 289 5.3E-51 T 22-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 PP4_RS26725 84a4b14c1f06023634919b1bcecac2be 299 PANTHER PTHR30349:SF17 1 299 4.0E-137 T 22-04-2016 PP4_RS26725 84a4b14c1f06023634919b1bcecac2be 299 Pfam PF00589 Phage integrase family 111 277 6.1E-42 T 22-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 PP4_RS26725 84a4b14c1f06023634919b1bcecac2be 299 PANTHER PTHR30349 1 299 4.0E-137 T 22-04-2016 PP4_RS26725 84a4b14c1f06023634919b1bcecac2be 299 TIGRFAM TIGR02224 recomb_XerC: tyrosine recombinase XerC 7 293 2.8E-106 T 22-04-2016 IPR011931 Tyrosine recombinase XerC GO:0003677|GO:0006310|GO:0007049|GO:0007059|GO:0015074|GO:0051301 PP4_RS26725 84a4b14c1f06023634919b1bcecac2be 299 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 1 291 35.147 T 22-04-2016 IPR023009 Tyrosine recombinase XerC/XerD PP4_RS26725 84a4b14c1f06023634919b1bcecac2be 299 SUPERFAMILY SSF47823 4 96 1.35E-17 T 22-04-2016 IPR010998 Integrase, Lambda-type, N-terminal PP4_RS00550 a2190e2d477a2727d533b01806f2efbb 161 Pfam PF01475 Ferric uptake regulator family 31 150 3.0E-10 T 22-04-2016 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 PP4_RS00550 a2190e2d477a2727d533b01806f2efbb 161 SUPERFAMILY SSF46785 25 155 7.08E-30 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS00550 a2190e2d477a2727d533b01806f2efbb 161 PANTHER PTHR33202 6 160 1.5E-71 T 22-04-2016 PP4_RS00550 a2190e2d477a2727d533b01806f2efbb 161 PANTHER PTHR33202:SF6 6 160 1.5E-71 T 22-04-2016 PP4_RS00550 a2190e2d477a2727d533b01806f2efbb 161 Gene3D G3DSA:1.10.10.10 23 92 1.9E-11 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS00245 75292c2221e8b0196acab644768d98e9 261 PANTHER PTHR10434:SF11 6 246 4.6E-53 T 22-04-2016 PP4_RS00245 75292c2221e8b0196acab644768d98e9 261 PANTHER PTHR10434 6 246 4.6E-53 T 22-04-2016 PP4_RS00245 75292c2221e8b0196acab644768d98e9 261 Pfam PF01553 Acyltransferase 69 192 3.6E-23 T 22-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 PP4_RS00245 75292c2221e8b0196acab644768d98e9 261 Gene3D G3DSA:3.40.1130.10 71 227 2.5E-19 T 22-04-2016 PP4_RS00245 75292c2221e8b0196acab644768d98e9 261 SUPERFAMILY SSF69593 16 223 1.26E-38 T 22-04-2016 PP4_RS00245 75292c2221e8b0196acab644768d98e9 261 SMART SM00563 81 195 2.7E-30 T 22-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 PP4_RS25665 04eda16fc5017d3317cda71359e500ea 857 Hamap MF_01072 Glucans biosynthesis glucosyltransferase H [mdoH]. 70 747 52.062 T 22-04-2016 IPR023725 Glucan biosynthesis glucosyltransferase H GO:0016758 UniPathway: UPA00637 PP4_RS25665 04eda16fc5017d3317cda71359e500ea 857 Gene3D G3DSA:3.90.550.10 263 382 2.9E-5 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS25665 04eda16fc5017d3317cda71359e500ea 857 PANTHER PTHR10587 469 726 3.8E-147 T 22-04-2016 PP4_RS25665 04eda16fc5017d3317cda71359e500ea 857 PANTHER PTHR10587 151 420 3.8E-147 T 22-04-2016 PP4_RS25665 04eda16fc5017d3317cda71359e500ea 857 PANTHER PTHR10587:SF63 469 726 3.8E-147 T 22-04-2016 PP4_RS25665 04eda16fc5017d3317cda71359e500ea 857 PANTHER PTHR10587:SF63 151 420 3.8E-147 T 22-04-2016 PP4_RS25665 04eda16fc5017d3317cda71359e500ea 857 Pfam PF00535 Glycosyl transferase family 2 248 430 3.8E-23 T 22-04-2016 IPR001173 Glycosyltransferase 2-like PP4_RS25665 04eda16fc5017d3317cda71359e500ea 857 SUPERFAMILY SSF53448 246 532 4.78E-28 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS25130 f596131f5c863506e05c5325a53d4192 205 TIGRFAM TIGR00052 TIGR00052: nudix-type nucleoside diphosphatase, YffH/AdpP family 12 195 1.0E-48 T 22-04-2016 IPR004385 Nucleoside diphosphate pyrophosphatase GO:0016818|GO:0046872 PP4_RS25130 f596131f5c863506e05c5325a53d4192 205 PANTHER PTHR11839 12 205 2.5E-91 T 22-04-2016 PP4_RS25130 f596131f5c863506e05c5325a53d4192 205 ProSitePatterns PS00893 Nudix box signature. 93 114 - T 22-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 PP4_RS25130 f596131f5c863506e05c5325a53d4192 205 PANTHER PTHR11839:SF5 12 205 2.5E-91 T 22-04-2016 PP4_RS25130 f596131f5c863506e05c5325a53d4192 205 SUPERFAMILY SSF55811 11 204 5.01E-47 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PP4_RS25130 f596131f5c863506e05c5325a53d4192 205 Pfam PF00293 NUDIX domain 52 174 7.7E-15 T 22-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 PP4_RS25130 f596131f5c863506e05c5325a53d4192 205 Gene3D G3DSA:3.90.79.10 11 198 5.4E-57 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PP4_RS24035 8dfa7f5acbf034d3fd9830070e5cdcae 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 65 2.9E-20 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS24035 8dfa7f5acbf034d3fd9830070e5cdcae 300 PANTHER PTHR30537 1 296 2.4E-150 T 22-04-2016 PP4_RS24035 8dfa7f5acbf034d3fd9830070e5cdcae 300 SUPERFAMILY SSF46785 5 89 8.18E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS24035 8dfa7f5acbf034d3fd9830070e5cdcae 300 Gene3D G3DSA:1.10.10.10 5 79 1.9E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS24035 8dfa7f5acbf034d3fd9830070e5cdcae 300 SUPERFAMILY SSF53850 91 296 7.78E-38 T 22-04-2016 PP4_RS24035 8dfa7f5acbf034d3fd9830070e5cdcae 300 Pfam PF03466 LysR substrate binding domain 90 296 2.8E-33 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS24035 8dfa7f5acbf034d3fd9830070e5cdcae 300 Gene3D G3DSA:3.40.190.10 86 144 1.8E-4 T 22-04-2016 PP4_RS24035 8dfa7f5acbf034d3fd9830070e5cdcae 300 PANTHER PTHR30537:SF1 1 296 2.4E-150 T 22-04-2016 PP4_RS24035 8dfa7f5acbf034d3fd9830070e5cdcae 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 2.3E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS24035 8dfa7f5acbf034d3fd9830070e5cdcae 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 2.3E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS24035 8dfa7f5acbf034d3fd9830070e5cdcae 300 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 2.3E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS24035 8dfa7f5acbf034d3fd9830070e5cdcae 300 Gene3D G3DSA:3.40.190.10 164 265 5.4E-23 T 22-04-2016 PP4_RS09935 acbb76a252568aa4f5d11d6cd5a8d959 526 Gene3D G3DSA:3.50.50.60 46 82 6.8E-11 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS09935 acbb76a252568aa4f5d11d6cd5a8d959 526 Gene3D G3DSA:3.90.660.10 83 169 3.0E-42 T 22-04-2016 PP4_RS09935 acbb76a252568aa4f5d11d6cd5a8d959 526 Gene3D G3DSA:3.90.660.10 359 454 3.0E-42 T 22-04-2016 PP4_RS09935 acbb76a252568aa4f5d11d6cd5a8d959 526 SUPERFAMILY SSF54373 358 462 3.3E-14 T 22-04-2016 PP4_RS09935 acbb76a252568aa4f5d11d6cd5a8d959 526 PANTHER PTHR10742:SF277 52 522 1.2E-48 T 22-04-2016 PP4_RS09935 acbb76a252568aa4f5d11d6cd5a8d959 526 Pfam PF01593 Flavin containing amine oxidoreductase 62 513 1.5E-32 T 22-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 PP4_RS09935 acbb76a252568aa4f5d11d6cd5a8d959 526 PANTHER PTHR10742 52 522 1.2E-48 T 22-04-2016 PP4_RS09935 acbb76a252568aa4f5d11d6cd5a8d959 526 SUPERFAMILY SSF51905 457 516 9.07E-47 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS09935 acbb76a252568aa4f5d11d6cd5a8d959 526 SUPERFAMILY SSF51905 51 370 9.07E-47 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS09935 acbb76a252568aa4f5d11d6cd5a8d959 526 Gene3D G3DSA:3.50.50.60 259 355 5.1E-15 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS09935 acbb76a252568aa4f5d11d6cd5a8d959 526 Gene3D G3DSA:3.50.50.60 479 517 5.1E-15 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS25355 a018429b3fcb1fef24befb41db3bb30c 665 SUPERFAMILY SSF52518 5 328 1.66E-117 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS25355 a018429b3fcb1fef24befb41db3bb30c 665 SMART SM00861 354 526 4.6E-69 T 22-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain PP4_RS25355 a018429b3fcb1fef24befb41db3bb30c 665 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 5 333 2.5E-160 T 22-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 PP4_RS25355 a018429b3fcb1fef24befb41db3bb30c 665 PANTHER PTHR11624:SF1 1 309 0.0 T 22-04-2016 PP4_RS25355 a018429b3fcb1fef24befb41db3bb30c 665 PANTHER PTHR11624:SF1 328 664 0.0 T 22-04-2016 PP4_RS25355 a018429b3fcb1fef24befb41db3bb30c 665 Gene3D G3DSA:3.40.50.920 538 664 1.6E-48 T 22-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 PP4_RS25355 a018429b3fcb1fef24befb41db3bb30c 665 Gene3D G3DSA:3.40.50.970 326 533 2.4E-78 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS25355 a018429b3fcb1fef24befb41db3bb30c 665 Pfam PF02780 Transketolase, C-terminal domain 540 655 6.1E-17 T 22-04-2016 IPR033248 Transketolase, C-terminal domain PP4_RS25355 a018429b3fcb1fef24befb41db3bb30c 665 Gene3D G3DSA:3.40.50.970 5 321 2.4E-128 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS25355 a018429b3fcb1fef24befb41db3bb30c 665 ProSitePatterns PS00801 Transketolase signature 1. 12 32 - T 22-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 PP4_RS25355 a018429b3fcb1fef24befb41db3bb30c 665 Pfam PF02779 Transketolase, pyrimidine binding domain 353 525 1.4E-46 T 22-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain PP4_RS25355 a018429b3fcb1fef24befb41db3bb30c 665 SUPERFAMILY SSF52922 532 664 1.96E-41 T 22-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 PP4_RS25355 a018429b3fcb1fef24befb41db3bb30c 665 ProSitePatterns PS00802 Transketolase signature 2. 467 483 - T 22-04-2016 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 PP4_RS25355 a018429b3fcb1fef24befb41db3bb30c 665 SUPERFAMILY SSF52518 334 526 5.89E-68 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS25355 a018429b3fcb1fef24befb41db3bb30c 665 TIGRFAM TIGR00232 tktlase_bact: transketolase 6 663 4.1E-303 T 22-04-2016 IPR005478 Transketolase, bacterial-like GO:0004802 KEGG: 00030+2.2.1.1|KEGG: 00710+2.2.1.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|MetaCyc: PWY-6901 PP4_RS25355 a018429b3fcb1fef24befb41db3bb30c 665 PANTHER PTHR11624 1 309 0.0 T 22-04-2016 IPR033247 Transketolase family PP4_RS25355 a018429b3fcb1fef24befb41db3bb30c 665 PANTHER PTHR11624 328 664 0.0 T 22-04-2016 IPR033247 Transketolase family PP4_RS00870 6861e26326d16308e1d8e90bef0a04b1 287 Pfam PF00005 ABC transporter 42 183 1.4E-31 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS00870 6861e26326d16308e1d8e90bef0a04b1 287 Gene3D G3DSA:3.40.50.300 19 238 1.2E-62 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS00870 6861e26326d16308e1d8e90bef0a04b1 287 PANTHER PTHR24220 23 239 3.1E-145 T 22-04-2016 PP4_RS00870 6861e26326d16308e1d8e90bef0a04b1 287 SUPERFAMILY SSF52540 21 238 1.18E-63 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS00870 6861e26326d16308e1d8e90bef0a04b1 287 PANTHER PTHR24220:SF422 23 239 3.1E-145 T 22-04-2016 PP4_RS00870 6861e26326d16308e1d8e90bef0a04b1 287 SMART SM00382 50 231 1.9E-17 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS00870 6861e26326d16308e1d8e90bef0a04b1 287 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS07365 085803da64928737ce5b013af64df66c 222 PIRSF PIRSF002764 1 221 2.8E-79 T 22-04-2016 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria PP4_RS07365 085803da64928737ce5b013af64df66c 222 Pfam PF03379 CcmB protein 5 218 4.8E-84 T 22-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 PP4_RS07365 085803da64928737ce5b013af64df66c 222 PANTHER PTHR30070:SF1 1 221 3.0E-65 T 22-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 PP4_RS07365 085803da64928737ce5b013af64df66c 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 102 120 3.5E-71 T 22-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 PP4_RS07365 085803da64928737ce5b013af64df66c 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 28 49 3.5E-71 T 22-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 PP4_RS07365 085803da64928737ce5b013af64df66c 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 77 100 3.5E-71 T 22-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 PP4_RS07365 085803da64928737ce5b013af64df66c 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 194 217 3.5E-71 T 22-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 PP4_RS07365 085803da64928737ce5b013af64df66c 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 54 71 3.5E-71 T 22-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 PP4_RS07365 085803da64928737ce5b013af64df66c 222 PRINTS PR01414 Cytochrome c-type biogenesis protein CcmB signature 133 156 3.5E-71 T 22-04-2016 IPR003544 Cytochrome c-type biogenesis protein CcmB GO:0015232|GO:0015886|GO:0016020|GO:0017004 PP4_RS07365 085803da64928737ce5b013af64df66c 222 TIGRFAM TIGR01190 ccmB: heme exporter protein CcmB 7 217 1.5E-88 T 22-04-2016 IPR026031 Cytochrome c-type biogenesis protein CcmB, bacteria PP4_RS07365 085803da64928737ce5b013af64df66c 222 PANTHER PTHR30070 1 221 3.0E-65 T 22-04-2016 PP4_RS07220 05f649eff6780a57f3826101612d7946 563 Gene3D G3DSA:3.30.565.10 430 543 1.8E-4 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS07220 05f649eff6780a57f3826101612d7946 563 SMART SM00448 7 120 2.9E-32 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS07220 05f649eff6780a57f3826101612d7946 563 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 194 381 2.7E-39 T 22-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 PP4_RS07220 05f649eff6780a57f3826101612d7946 563 PANTHER PTHR24423 3 161 5.5E-33 T 22-04-2016 PP4_RS07220 05f649eff6780a57f3826101612d7946 563 Gene3D G3DSA:3.60.40.10 309 378 2.9E-4 T 22-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 PP4_RS07220 05f649eff6780a57f3826101612d7946 563 SUPERFAMILY SSF52172 7 147 1.57E-36 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS07220 05f649eff6780a57f3826101612d7946 563 Pfam PF13581 Histidine kinase-like ATPase domain 441 557 3.3E-7 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS07220 05f649eff6780a57f3826101612d7946 563 Gene3D G3DSA:3.40.50.2300 4 132 1.5E-35 T 22-04-2016 PP4_RS07220 05f649eff6780a57f3826101612d7946 563 SUPERFAMILY SSF81606 232 378 1.18E-6 T 22-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 PP4_RS07220 05f649eff6780a57f3826101612d7946 563 SUPERFAMILY SSF55874 489 546 1.05E-6 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS07220 05f649eff6780a57f3826101612d7946 563 SUPERFAMILY SSF55874 429 458 1.05E-6 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS07220 05f649eff6780a57f3826101612d7946 563 SMART SM00331 177 382 1.3E-7 T 22-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 PP4_RS07220 05f649eff6780a57f3826101612d7946 563 Pfam PF00072 Response regulator receiver domain 9 116 8.4E-22 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS15780 c17dc09f8a29bd5c450b292cb348c8cd 502 Pfam PF00171 Aldehyde dehydrogenase family 34 497 4.3E-172 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PP4_RS15780 c17dc09f8a29bd5c450b292cb348c8cd 502 PANTHER PTHR11699:SF46 6 501 4.2E-227 T 22-04-2016 PP4_RS15780 c17dc09f8a29bd5c450b292cb348c8cd 502 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 273 280 - T 22-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 PP4_RS15780 c17dc09f8a29bd5c450b292cb348c8cd 502 PANTHER PTHR11699 6 501 4.2E-227 T 22-04-2016 PP4_RS15780 c17dc09f8a29bd5c450b292cb348c8cd 502 Gene3D G3DSA:3.40.309.10 288 472 8.8E-66 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PP4_RS15780 c17dc09f8a29bd5c450b292cb348c8cd 502 Gene3D G3DSA:3.40.605.10 26 287 1.4E-98 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS15780 c17dc09f8a29bd5c450b292cb348c8cd 502 SUPERFAMILY SSF53720 21 500 1.57E-167 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS16035 03dc5f1ddbfe7d28b0a27ba5f1161eb0 272 SUPERFAMILY SSF47413 15 74 1.55E-12 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS16035 03dc5f1ddbfe7d28b0a27ba5f1161eb0 272 PANTHER PTHR10245:SF17 14 140 2.5E-24 T 22-04-2016 PP4_RS16035 03dc5f1ddbfe7d28b0a27ba5f1161eb0 272 Pfam PF13560 Helix-turn-helix domain 17 73 2.6E-13 T 22-04-2016 PP4_RS16035 03dc5f1ddbfe7d28b0a27ba5f1161eb0 272 SMART SM00530 20 75 4.4E-9 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS16035 03dc5f1ddbfe7d28b0a27ba5f1161eb0 272 Gene3D G3DSA:1.10.260.40 17 73 9.0E-13 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS16035 03dc5f1ddbfe7d28b0a27ba5f1161eb0 272 PANTHER PTHR10245 14 140 2.5E-24 T 22-04-2016 PP4_RS02240 7b762cc18963664d71ce9c9dfcb2fd03 795 SMART SM00091 451 524 4.9 T 22-04-2016 IPR000014 PAS domain PP4_RS02240 7b762cc18963664d71ce9c9dfcb2fd03 795 SMART SM00091 326 392 0.025 T 22-04-2016 IPR000014 PAS domain PP4_RS02240 7b762cc18963664d71ce9c9dfcb2fd03 795 Gene3D G3DSA:3.40.190.10 42 130 4.7E-14 T 22-04-2016 PP4_RS02240 7b762cc18963664d71ce9c9dfcb2fd03 795 Gene3D G3DSA:3.40.190.10 225 265 4.7E-14 T 22-04-2016 PP4_RS02240 7b762cc18963664d71ce9c9dfcb2fd03 795 SUPERFAMILY SSF55785 338 448 3.54E-20 T 22-04-2016 IPR000014 PAS domain PP4_RS02240 7b762cc18963664d71ce9c9dfcb2fd03 795 PANTHER PTHR24423 311 795 1.7E-40 T 22-04-2016 PP4_RS02240 7b762cc18963664d71ce9c9dfcb2fd03 795 Pfam PF13426 PAS domain 338 438 6.3E-9 T 22-04-2016 IPR000014 PAS domain PP4_RS02240 7b762cc18963664d71ce9c9dfcb2fd03 795 SUPERFAMILY SSF55785 436 569 1.29E-17 T 22-04-2016 IPR000014 PAS domain PP4_RS02240 7b762cc18963664d71ce9c9dfcb2fd03 795 Gene3D G3DSA:3.30.565.10 666 794 1.3E-13 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS02240 7b762cc18963664d71ce9c9dfcb2fd03 795 SUPERFAMILY SSF55874 672 794 1.57E-19 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS02240 7b762cc18963664d71ce9c9dfcb2fd03 795 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 705 795 6.2E-8 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS02240 7b762cc18963664d71ce9c9dfcb2fd03 795 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 331 445 7.4E-12 T 22-04-2016 IPR000014 PAS domain PP4_RS02240 7b762cc18963664d71ce9c9dfcb2fd03 795 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 477 578 4.4E-9 T 22-04-2016 IPR000014 PAS domain PP4_RS02240 7b762cc18963664d71ce9c9dfcb2fd03 795 Pfam PF07730 Histidine kinase 599 665 2.4E-13 T 22-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 PP4_RS02240 7b762cc18963664d71ce9c9dfcb2fd03 795 SMART SM00387 703 795 3.0E-4 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS02240 7b762cc18963664d71ce9c9dfcb2fd03 795 SMART SM00062 44 265 1.6E-12 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS02240 7b762cc18963664d71ce9c9dfcb2fd03 795 SUPERFAMILY SSF53850 45 265 1.52E-32 T 22-04-2016 PP4_RS02240 7b762cc18963664d71ce9c9dfcb2fd03 795 Pfam PF08447 PAS fold 480 564 6.3E-14 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 PP4_RS02240 7b762cc18963664d71ce9c9dfcb2fd03 795 Gene3D G3DSA:3.30.450.20 317 434 2.1E-17 T 22-04-2016 PP4_RS02240 7b762cc18963664d71ce9c9dfcb2fd03 795 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 52 263 5.0E-21 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS02240 7b762cc18963664d71ce9c9dfcb2fd03 795 Gene3D G3DSA:3.30.450.20 435 586 2.9E-19 T 22-04-2016 PP4_RS02240 7b762cc18963664d71ce9c9dfcb2fd03 795 PRINTS PR00344 Bacterial sensor protein C-terminal signature 756 774 5.9E-5 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS02240 7b762cc18963664d71ce9c9dfcb2fd03 795 PRINTS PR00344 Bacterial sensor protein C-terminal signature 780 793 5.9E-5 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS02240 7b762cc18963664d71ce9c9dfcb2fd03 795 PRINTS PR00344 Bacterial sensor protein C-terminal signature 739 753 5.9E-5 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS00205 af51fcdcf311c4fe1b4626f929c63c5c 135 ProDom PD456999 SIGNAL PRECURSOR TRANSMEMBRANE MEMBRANE YOHN INTEGRAL EXPORTED SIMILAR LIPOPROTEIN LIPOPROTEIN 75 131 3.0E-27 T 22-04-2016 IPR024572 Nickel/cobalt homeostasis protein RcnB PP4_RS00205 af51fcdcf311c4fe1b4626f929c63c5c 135 Pfam PF11776 Nickel/cobalt transporter regulator 80 129 2.4E-22 T 22-04-2016 IPR024572 Nickel/cobalt homeostasis protein RcnB PP4_RS03345 5ccadd5837fcaa1721819a25560bdb23 425 Gene3D G3DSA:3.40.47.10 169 212 2.7E-43 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS03345 5ccadd5837fcaa1721819a25560bdb23 425 Gene3D G3DSA:3.40.47.10 289 424 2.7E-43 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS03345 5ccadd5837fcaa1721819a25560bdb23 425 PANTHER PTHR18919 2 425 5.6E-178 T 22-04-2016 PP4_RS03345 5ccadd5837fcaa1721819a25560bdb23 425 Pfam PF02803 Thiolase, C-terminal domain 283 425 8.4E-31 T 22-04-2016 IPR020617 Thiolase, C-terminal GO:0008152|GO:0016747 PP4_RS03345 5ccadd5837fcaa1721819a25560bdb23 425 SUPERFAMILY SSF53901 281 425 1.19E-29 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS03345 5ccadd5837fcaa1721819a25560bdb23 425 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 9 424 7.3E-115 T 22-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 PP4_RS03345 5ccadd5837fcaa1721819a25560bdb23 425 PIRSF PIRSF000429 1 425 4.6E-99 T 22-04-2016 IPR002155 Thiolase GO:0008152|GO:0016747 PP4_RS03345 5ccadd5837fcaa1721819a25560bdb23 425 SUPERFAMILY SSF53901 7 282 6.55E-55 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS03345 5ccadd5837fcaa1721819a25560bdb23 425 PANTHER PTHR18919:SF5 2 425 5.6E-178 T 22-04-2016 PP4_RS03345 5ccadd5837fcaa1721819a25560bdb23 425 Gene3D G3DSA:3.40.47.10 7 126 2.3E-45 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS03345 5ccadd5837fcaa1721819a25560bdb23 425 Gene3D G3DSA:3.40.47.10 213 287 2.3E-45 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS03345 5ccadd5837fcaa1721819a25560bdb23 425 Pfam PF00108 Thiolase, N-terminal domain 7 274 2.2E-46 T 22-04-2016 IPR020616 Thiolase, N-terminal GO:0008152|GO:0016747 PP4_RS03735 c89fd84926162b6b88b164b65d39b7dd 311 Pfam PF13411 MerR HTH family regulatory protein 21 87 2.8E-16 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS03735 c89fd84926162b6b88b164b65d39b7dd 311 PANTHER PTHR30204 16 128 9.5E-37 T 22-04-2016 PP4_RS03735 c89fd84926162b6b88b164b65d39b7dd 311 SUPERFAMILY SSF46955 20 114 5.95E-18 T 22-04-2016 IPR009061 Putative DNA-binding domain PP4_RS03735 c89fd84926162b6b88b164b65d39b7dd 311 SMART SM00422 20 89 4.5E-19 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS03735 c89fd84926162b6b88b164b65d39b7dd 311 Gene3D G3DSA:1.10.1660.10 21 117 5.6E-20 T 22-04-2016 PP4_RS03735 c89fd84926162b6b88b164b65d39b7dd 311 PANTHER PTHR30204:SF19 16 128 9.5E-37 T 22-04-2016 PP4_RS03735 c89fd84926162b6b88b164b65d39b7dd 311 Pfam PF02607 B12 binding domain 106 176 2.4E-6 T 22-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain PP4_RS14485 1e09dc3e63cc689fb3f0ae4953147fe4 122 SUPERFAMILY SSF56349 13 93 2.71E-12 T 22-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 PP4_RS14485 1e09dc3e63cc689fb3f0ae4953147fe4 122 PANTHER PTHR30349 18 98 1.2E-12 T 22-04-2016 PP4_RS14485 1e09dc3e63cc689fb3f0ae4953147fe4 122 PANTHER PTHR30349:SF36 18 98 1.2E-12 T 22-04-2016 PP4_RS14485 1e09dc3e63cc689fb3f0ae4953147fe4 122 Gene3D G3DSA:1.10.443.10 4 95 9.8E-13 T 22-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 PP4_RS20245 f89d04fb8911c16eb32a3b353a811667 497 TIGRFAM TIGR03708 poly_P_AMP_trns: polyphosphate:AMP phosphotransferase 2 491 1.1E-222 T 22-04-2016 IPR022489 Polyphosphate:AMP phosphotransferase GO:0006797|GO:0043751 PP4_RS20245 f89d04fb8911c16eb32a3b353a811667 497 PANTHER PTHR34383 4 489 1.6E-257 T 22-04-2016 PP4_RS20245 f89d04fb8911c16eb32a3b353a811667 497 Gene3D G3DSA:3.40.50.300 1 243 4.5E-82 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS20245 f89d04fb8911c16eb32a3b353a811667 497 Gene3D G3DSA:3.40.50.300 254 496 3.3E-103 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS20245 f89d04fb8911c16eb32a3b353a811667 497 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 11 234 1.5E-50 T 22-04-2016 IPR022488 Polyphosphate kinase-2-related PP4_RS20245 f89d04fb8911c16eb32a3b353a811667 497 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 269 493 2.1E-93 T 22-04-2016 IPR022488 Polyphosphate kinase-2-related PP4_RS20245 f89d04fb8911c16eb32a3b353a811667 497 SUPERFAMILY SSF52540 41 218 4.23E-11 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS20245 f89d04fb8911c16eb32a3b353a811667 497 PANTHER PTHR34383:SF3 4 489 1.6E-257 T 22-04-2016 PP4_RS20245 f89d04fb8911c16eb32a3b353a811667 497 SUPERFAMILY SSF52540 302 489 4.39E-27 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS09340 8e1c16740ace50eddba89ce53fa475a7 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 77 88 1.5E-9 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS09340 8e1c16740ace50eddba89ce53fa475a7 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 150 169 1.5E-9 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS09340 8e1c16740ace50eddba89ce53fa475a7 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 1.5E-9 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS09340 8e1c16740ace50eddba89ce53fa475a7 268 PANTHER PTHR24322 10 134 2.0E-36 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS09340 8e1c16740ace50eddba89ce53fa475a7 268 PANTHER PTHR24322 150 180 2.0E-36 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS09340 8e1c16740ace50eddba89ce53fa475a7 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 4.8E-16 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS09340 8e1c16740ace50eddba89ce53fa475a7 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 150 169 4.8E-16 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS09340 8e1c16740ace50eddba89ce53fa475a7 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 77 88 4.8E-16 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS09340 8e1c16740ace50eddba89ce53fa475a7 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 4.8E-16 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS09340 8e1c16740ace50eddba89ce53fa475a7 268 Gene3D G3DSA:3.40.50.720 7 249 7.6E-57 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS09340 8e1c16740ace50eddba89ce53fa475a7 268 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 182 1.6E-5 T 22-04-2016 PP4_RS09340 8e1c16740ace50eddba89ce53fa475a7 268 SUPERFAMILY SSF51735 1 261 6.71E-59 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS09340 8e1c16740ace50eddba89ce53fa475a7 268 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 137 165 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PP4_RS09340 8e1c16740ace50eddba89ce53fa475a7 268 Pfam PF00106 short chain dehydrogenase 7 192 5.9E-44 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19000 e02b88e8cf48d1b416389d2ef385ecd8 142 ProSitePatterns PS00893 Nudix box signature. 34 55 - T 22-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 PP4_RS19000 e02b88e8cf48d1b416389d2ef385ecd8 142 SUPERFAMILY SSF55811 18 128 8.53E-17 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PP4_RS19000 e02b88e8cf48d1b416389d2ef385ecd8 142 Gene3D G3DSA:3.90.79.10 15 138 2.1E-17 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PP4_RS19000 e02b88e8cf48d1b416389d2ef385ecd8 142 Pfam PF00293 NUDIX domain 18 114 5.3E-11 T 22-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 PP4_RS04100 89baa2786641edc8b740ae78b3ab3768 464 PANTHER PTHR30473 13 188 4.8E-195 T 22-04-2016 PP4_RS04100 89baa2786641edc8b740ae78b3ab3768 464 PANTHER PTHR30473 207 459 4.8E-195 T 22-04-2016 PP4_RS04100 89baa2786641edc8b740ae78b3ab3768 464 PANTHER PTHR30473:SF2 13 188 4.8E-195 T 22-04-2016 PP4_RS04100 89baa2786641edc8b740ae78b3ab3768 464 PANTHER PTHR30473:SF2 207 459 4.8E-195 T 22-04-2016 PP4_RS04100 89baa2786641edc8b740ae78b3ab3768 464 Gene3D G3DSA:3.40.50.1010 16 75 8.1E-13 T 22-04-2016 IPR029060 PIN domain-like PP4_RS04100 89baa2786641edc8b740ae78b3ab3768 464 Gene3D G3DSA:3.40.50.1010 111 164 8.1E-13 T 22-04-2016 IPR029060 PIN domain-like PP4_RS04100 89baa2786641edc8b740ae78b3ab3768 464 Gene3D G3DSA:3.40.50.300 252 461 4.0E-54 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS04100 89baa2786641edc8b740ae78b3ab3768 464 Pfam PF02562 PhoH-like protein 254 453 2.7E-46 T 22-04-2016 IPR003714 PhoH-like protein GO:0005524 PP4_RS04100 89baa2786641edc8b740ae78b3ab3768 464 SMART SM00670 14 148 2.6E-7 T 22-04-2016 IPR002716 PIN domain PP4_RS04100 89baa2786641edc8b740ae78b3ab3768 464 SUPERFAMILY SSF52540 206 443 5.57E-29 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS04100 89baa2786641edc8b740ae78b3ab3768 464 Pfam PF13638 PIN domain 16 160 1.5E-38 T 22-04-2016 IPR002716 PIN domain PP4_RS04100 89baa2786641edc8b740ae78b3ab3768 464 SUPERFAMILY SSF88723 13 75 1.57E-15 T 22-04-2016 IPR029060 PIN domain-like PP4_RS04100 89baa2786641edc8b740ae78b3ab3768 464 SUPERFAMILY SSF88723 111 161 1.57E-15 T 22-04-2016 IPR029060 PIN domain-like PP4_RS11835 fc8b175cdf0276d346c279e499074ba2 340 PANTHER PTHR32039 5 304 2.8E-106 T 22-04-2016 PP4_RS11835 fc8b175cdf0276d346c279e499074ba2 340 PANTHER PTHR32039:SF10 5 304 2.8E-106 T 22-04-2016 PP4_RS11835 fc8b175cdf0276d346c279e499074ba2 340 Gene3D G3DSA:1.10.8.80 217 292 6.6E-25 T 22-04-2016 PP4_RS11835 fc8b175cdf0276d346c279e499074ba2 340 SMART SM00382 30 174 9.0E-7 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS11835 fc8b175cdf0276d346c279e499074ba2 340 SUPERFAMILY SSF52540 7 287 8.63E-55 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS11835 fc8b175cdf0276d346c279e499074ba2 340 Pfam PF07728 AAA domain (dynein-related subfamily) 33 163 5.1E-12 T 22-04-2016 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 PP4_RS11835 fc8b175cdf0276d346c279e499074ba2 340 Gene3D G3DSA:3.40.50.300 7 167 2.5E-47 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS00225 5440b158ec52b1d26ce3319aa0577726 272 Pfam PF01925 Sulfite exporter TauE/SafE 9 258 1.0E-39 T 22-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 PP4_RS00225 5440b158ec52b1d26ce3319aa0577726 272 PANTHER PTHR30269:SF14 1 270 8.1E-37 T 22-04-2016 PP4_RS00225 5440b158ec52b1d26ce3319aa0577726 272 PANTHER PTHR30269 1 270 8.1E-37 T 22-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 PP4_RS27265 0e60b0c6f46f2084b35c4c22a6bfff1e 728 Gene3D G3DSA:1.10.486.10 391 544 1.2E-48 T 22-04-2016 PP4_RS27265 0e60b0c6f46f2084b35c4c22a6bfff1e 728 Gene3D G3DSA:3.40.50.300 194 288 1.7E-69 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS27265 0e60b0c6f46f2084b35c4c22a6bfff1e 728 Gene3D G3DSA:3.40.50.300 9 113 1.7E-69 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS27265 0e60b0c6f46f2084b35c4c22a6bfff1e 728 PANTHER PTHR11070 9 728 5.0E-243 T 22-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 PP4_RS27265 0e60b0c6f46f2084b35c4c22a6bfff1e 728 Pfam PF13361 UvrD-like helicase C-terminal domain 280 619 2.6E-77 T 22-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 PP4_RS27265 0e60b0c6f46f2084b35c4c22a6bfff1e 728 Gene3D G3DSA:1.10.10.160 117 193 6.6E-23 T 22-04-2016 IPR013986 DExx box DNA helicase domain PP4_RS27265 0e60b0c6f46f2084b35c4c22a6bfff1e 728 Pfam PF00580 UvrD/REP helicase N-terminal domain 13 274 1.3E-73 T 22-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 PP4_RS27265 0e60b0c6f46f2084b35c4c22a6bfff1e 728 PANTHER PTHR11070:SF7 9 728 5.0E-243 T 22-04-2016 PP4_RS27265 0e60b0c6f46f2084b35c4c22a6bfff1e 728 SUPERFAMILY SSF52540 10 645 1.11E-180 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS27265 0e60b0c6f46f2084b35c4c22a6bfff1e 728 Gene3D G3DSA:3.40.50.300 555 645 9.0E-72 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS27265 0e60b0c6f46f2084b35c4c22a6bfff1e 728 Gene3D G3DSA:3.40.50.300 289 390 9.0E-72 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS08105 cd47f452a8f19efe3d7c0d33dd28f274 152 SUPERFAMILY SSF53254 2 135 1.19E-21 T 22-04-2016 IPR029033 Histidine phosphatase superfamily PP4_RS08105 cd47f452a8f19efe3d7c0d33dd28f274 152 TIGRFAM TIGR00249 sixA: phosphohistidine phosphatase SixA 2 133 6.0E-27 T 22-04-2016 IPR004449 Phosphohistidine phosphatase SixA GO:0005737|GO:0006464|GO:0008969 KEGG: 00051+3.1.3.-|KEGG: 00332+3.1.3.-|KEGG: 00565+3.1.3.-|KEGG: 00600+3.1.3.-|KEGG: 00730+3.1.3.-|KEGG: 00740+3.1.3.-|KEGG: 00760+3.1.3.- PP4_RS08105 cd47f452a8f19efe3d7c0d33dd28f274 152 Gene3D G3DSA:3.40.50.1240 2 146 7.7E-32 T 22-04-2016 IPR029033 Histidine phosphatase superfamily PP4_RS08105 cd47f452a8f19efe3d7c0d33dd28f274 152 SMART SM00855 2 110 4.6E-6 T 22-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 PP4_RS08105 cd47f452a8f19efe3d7c0d33dd28f274 152 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 3 75 5.1E-12 T 22-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 PP4_RS00500 6ee7e57ed63fa8a505134d9d2ad0cc84 359 PANTHER PTHR35457 62 210 3.5E-60 T 22-04-2016 PP4_RS00500 6ee7e57ed63fa8a505134d9d2ad0cc84 359 PANTHER PTHR35457 1 46 3.5E-60 T 22-04-2016 PP4_RS00500 6ee7e57ed63fa8a505134d9d2ad0cc84 359 PANTHER PTHR35457 233 341 3.5E-60 T 22-04-2016 PP4_RS00500 6ee7e57ed63fa8a505134d9d2ad0cc84 359 Pfam PF02628 Cytochrome oxidase assembly protein 8 317 2.8E-81 T 22-04-2016 IPR003780 COX15/CtaA family GO:0006784|GO:0016021|GO:0016627|GO:0055114 UniPathway: UPA00269 PP4_RS00500 6ee7e57ed63fa8a505134d9d2ad0cc84 359 PANTHER PTHR35457:SF1 62 210 3.5E-60 T 22-04-2016 PP4_RS00500 6ee7e57ed63fa8a505134d9d2ad0cc84 359 PANTHER PTHR35457:SF1 1 46 3.5E-60 T 22-04-2016 PP4_RS00500 6ee7e57ed63fa8a505134d9d2ad0cc84 359 PANTHER PTHR35457:SF1 233 341 3.5E-60 T 22-04-2016 PP4_RS03340 fa2deaa2f92ead9505385d2a62141d52 450 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 220 444 3.8E-48 T 22-04-2016 PP4_RS03340 fa2deaa2f92ead9505385d2a62141d52 450 Gene3D G3DSA:3.40.50.720 209 448 5.0E-64 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS03340 fa2deaa2f92ead9505385d2a62141d52 450 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 214 387 3.7E-6 T 22-04-2016 PP4_RS03340 fa2deaa2f92ead9505385d2a62141d52 450 SUPERFAMILY SSF51735 210 447 4.3E-60 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS03340 fa2deaa2f92ead9505385d2a62141d52 450 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 283 294 2.3E-5 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03340 fa2deaa2f92ead9505385d2a62141d52 450 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 356 375 2.3E-5 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03340 fa2deaa2f92ead9505385d2a62141d52 450 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 232 4.3E-29 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03340 fa2deaa2f92ead9505385d2a62141d52 450 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 410 430 4.3E-29 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03340 fa2deaa2f92ead9505385d2a62141d52 450 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 283 294 4.3E-29 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03340 fa2deaa2f92ead9505385d2a62141d52 450 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 377 394 4.3E-29 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03340 fa2deaa2f92ead9505385d2a62141d52 450 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 356 375 4.3E-29 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03340 fa2deaa2f92ead9505385d2a62141d52 450 PANTHER PTHR24322 218 340 9.3E-56 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03340 fa2deaa2f92ead9505385d2a62141d52 450 PANTHER PTHR24322 356 387 9.3E-56 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03340 fa2deaa2f92ead9505385d2a62141d52 450 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 343 371 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PP4_RS03340 fa2deaa2f92ead9505385d2a62141d52 450 PANTHER PTHR24322:SF438 218 340 9.3E-56 T 22-04-2016 PP4_RS03340 fa2deaa2f92ead9505385d2a62141d52 450 PANTHER PTHR24322:SF438 356 387 9.3E-56 T 22-04-2016 PP4_RS04155 ebebf67155b484fb13b32f981a370c0b 252 Gene3D G3DSA:3.40.1390.30 8 109 6.0E-36 T 22-04-2016 PP4_RS04155 ebebf67155b484fb13b32f981a370c0b 252 SUPERFAMILY SSF102705 8 251 2.22E-78 T 22-04-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 PP4_RS04155 ebebf67155b484fb13b32f981a370c0b 252 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 12 240 2.3E-59 T 22-04-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 PP4_RS04155 ebebf67155b484fb13b32f981a370c0b 252 Gene3D G3DSA:3.40.1390.30 110 219 5.7E-34 T 22-04-2016 PP4_RS04155 ebebf67155b484fb13b32f981a370c0b 252 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 8 251 6.0E-66 T 22-04-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 PP4_RS04155 ebebf67155b484fb13b32f981a370c0b 252 PANTHER PTHR13799 8 247 1.2E-78 T 22-04-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 PP4_RS22510 2ecc366ce2e66655f07cb963eac30a33 392 SUPERFAMILY SSF52343 257 388 2.88E-34 T 22-04-2016 PP4_RS22510 2ecc366ce2e66655f07cb963eac30a33 392 Pfam PF00042 Globin 6 103 7.2E-10 T 22-04-2016 IPR000971 Globin GO:0019825|GO:0020037 PP4_RS22510 2ecc366ce2e66655f07cb963eac30a33 392 PANTHER PTHR22924:SF49 1 391 5.8E-120 T 22-04-2016 PP4_RS22510 2ecc366ce2e66655f07cb963eac30a33 392 PRINTS PR00409 Phthalate dioxygenase reductase family signature 227 241 3.5E-8 T 22-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 PP4_RS22510 2ecc366ce2e66655f07cb963eac30a33 392 PRINTS PR00409 Phthalate dioxygenase reductase family signature 241 255 3.5E-8 T 22-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 PP4_RS22510 2ecc366ce2e66655f07cb963eac30a33 392 PRINTS PR00409 Phthalate dioxygenase reductase family signature 263 282 3.5E-8 T 22-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 PP4_RS22510 2ecc366ce2e66655f07cb963eac30a33 392 SUPERFAMILY SSF46458 2 144 4.99E-39 T 22-04-2016 IPR009050 Globin-like PP4_RS22510 2ecc366ce2e66655f07cb963eac30a33 392 Pfam PF00970 Oxidoreductase FAD-binding domain 158 253 8.7E-13 T 22-04-2016 IPR008333 Oxidoreductase, FAD-binding domain PP4_RS22510 2ecc366ce2e66655f07cb963eac30a33 392 Gene3D G3DSA:1.10.490.10 2 144 4.1E-51 T 22-04-2016 IPR012292 Globin/Protoglobin GO:0019825|GO:0020037 PP4_RS22510 2ecc366ce2e66655f07cb963eac30a33 392 SUPERFAMILY SSF63380 151 253 9.87E-29 T 22-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 PP4_RS22510 2ecc366ce2e66655f07cb963eac30a33 392 Gene3D G3DSA:3.40.50.80 258 389 1.6E-32 T 22-04-2016 PP4_RS22510 2ecc366ce2e66655f07cb963eac30a33 392 PANTHER PTHR22924 1 391 5.8E-120 T 22-04-2016 PP4_RS22510 2ecc366ce2e66655f07cb963eac30a33 392 Pfam PF00175 Oxidoreductase NAD-binding domain 264 367 4.3E-14 T 22-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 PP4_RS22510 2ecc366ce2e66655f07cb963eac30a33 392 Gene3D G3DSA:2.40.30.10 152 255 5.7E-33 T 22-04-2016 PP4_RS11465 093f557a6a6315ceca8f7847d02a4e5c 225 Pfam PF06267 Family of unknown function (DUF1028) 2 190 1.3E-65 T 22-04-2016 IPR010430 Protein of unknown function DUF1028 PP4_RS11465 093f557a6a6315ceca8f7847d02a4e5c 225 PANTHER PTHR39328:SF1 2 225 1.2E-70 T 22-04-2016 PP4_RS11465 093f557a6a6315ceca8f7847d02a4e5c 225 Gene3D G3DSA:3.60.20.10 1 215 2.4E-82 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PP4_RS11465 093f557a6a6315ceca8f7847d02a4e5c 225 PANTHER PTHR39328 2 225 1.2E-70 T 22-04-2016 PP4_RS11465 093f557a6a6315ceca8f7847d02a4e5c 225 SUPERFAMILY SSF56235 1 225 1.08E-75 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PP4_RS23560 7bcaf2ba87abb6aa0f12fecef0236dfa 148 PANTHER PTHR33823 4 143 6.3E-59 T 22-04-2016 PP4_RS23560 7bcaf2ba87abb6aa0f12fecef0236dfa 148 SUPERFAMILY SSF57716 107 144 2.14E-10 T 22-04-2016 PP4_RS23560 7bcaf2ba87abb6aa0f12fecef0236dfa 148 SUPERFAMILY SSF109635 12 105 2.22E-33 T 22-04-2016 PP4_RS23560 7bcaf2ba87abb6aa0f12fecef0236dfa 148 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 28 136 2.1E-50 T 22-04-2016 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 PP4_RS23560 7bcaf2ba87abb6aa0f12fecef0236dfa 148 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 106 140 9.8E-11 T 22-04-2016 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 PP4_RS23560 7bcaf2ba87abb6aa0f12fecef0236dfa 148 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 24 146 28.388 T 22-04-2016 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 PP4_RS23560 7bcaf2ba87abb6aa0f12fecef0236dfa 148 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 110 134 - T 22-04-2016 IPR020458 Zinc finger, DksA/TraR C4-type conserved site PP4_RS23560 7bcaf2ba87abb6aa0f12fecef0236dfa 148 PANTHER PTHR33823:SF2 4 143 6.3E-59 T 22-04-2016 PP4_RS22580 5c119643139e4aa27e7ac3aecf40f706 444 Pfam PF03573 outer membrane porin, OprD family 30 442 5.7E-150 T 22-04-2016 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 PP4_RS22580 5c119643139e4aa27e7ac3aecf40f706 444 PANTHER PTHR34596 1 444 2.7E-152 T 22-04-2016 PP4_RS22580 5c119643139e4aa27e7ac3aecf40f706 444 Gene3D G3DSA:2.40.160.10 36 444 6.7E-135 T 22-04-2016 IPR023614 Porin domain PP4_RS22420 d475249116edea42d4cc0a67ddd184a6 255 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 6 252 7.7E-77 T 22-04-2016 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 PP4_RS22420 d475249116edea42d4cc0a67ddd184a6 255 PANTHER PTHR30043:SF1 2 255 2.3E-86 T 22-04-2016 PP4_RS22420 d475249116edea42d4cc0a67ddd184a6 255 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 251 3.7E-15 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS22420 d475249116edea42d4cc0a67ddd184a6 255 SUPERFAMILY SSF161098 60 244 3.92E-31 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS22420 d475249116edea42d4cc0a67ddd184a6 255 PANTHER PTHR30043 2 255 2.3E-86 T 22-04-2016 PP4_RS22420 d475249116edea42d4cc0a67ddd184a6 255 Gene3D G3DSA:1.10.3720.10 58 252 7.4E-25 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS06135 cb24a8c9e352e1eb837570183b0f6d04 179 PANTHER PTHR10192:SF18 6 169 1.9E-89 T 22-04-2016 PP4_RS06135 cb24a8c9e352e1eb837570183b0f6d04 179 Pfam PF00994 Probable molybdopterin binding domain 15 156 1.2E-30 T 22-04-2016 IPR001453 MoaB/Mog domain PP4_RS06135 cb24a8c9e352e1eb837570183b0f6d04 179 PANTHER PTHR10192 6 169 1.9E-89 T 22-04-2016 PP4_RS06135 cb24a8c9e352e1eb837570183b0f6d04 179 SUPERFAMILY SSF53218 8 169 2.62E-45 T 22-04-2016 IPR001453 MoaB/Mog domain PP4_RS06135 cb24a8c9e352e1eb837570183b0f6d04 179 ProSitePatterns PS01078 Molybdenum cofactor biosynthesis proteins signature 1. 73 86 - T 22-04-2016 IPR008284 Molybdenum cofactor biosynthesis, conserved site GO:0006777 UniPathway: UPA00344 PP4_RS06135 cb24a8c9e352e1eb837570183b0f6d04 179 PIRSF PIRSF006443 1 167 4.9E-61 T 22-04-2016 IPR012245 Molybdenum cofactor biosynthesis protein MoaB GO:0006777 UniPathway: UPA00344 PP4_RS06135 cb24a8c9e352e1eb837570183b0f6d04 179 TIGRFAM TIGR02667 moaB_proteo: molybdenum cofactor biosynthesis protein B 9 169 1.0E-82 T 22-04-2016 IPR013484 Molybdenum cofactor biosynthesis protein B, proteobacteria GO:0006777 UniPathway: UPA00344 PP4_RS06135 cb24a8c9e352e1eb837570183b0f6d04 179 SMART SM00852 15 159 2.1E-27 T 22-04-2016 IPR001453 MoaB/Mog domain PP4_RS06135 cb24a8c9e352e1eb837570183b0f6d04 179 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 13 152 1.8E-31 T 22-04-2016 IPR001453 MoaB/Mog domain PP4_RS06135 cb24a8c9e352e1eb837570183b0f6d04 179 Gene3D G3DSA:3.40.980.10 7 168 5.9E-46 T 22-04-2016 IPR001453 MoaB/Mog domain PP4_RS11840 6030bff7c67d71c0313aa22a1ec5cc2a 188 SUPERFAMILY SSF53300 32 143 2.4E-13 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS11840 6030bff7c67d71c0313aa22a1ec5cc2a 188 Gene3D G3DSA:3.40.50.410 33 142 2.1E-7 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS11840 6030bff7c67d71c0313aa22a1ec5cc2a 188 Pfam PF13519 von Willebrand factor type A domain 32 137 7.3E-10 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS11840 6030bff7c67d71c0313aa22a1ec5cc2a 188 PANTHER PTHR35023:SF1 1 187 1.2E-33 T 22-04-2016 PP4_RS11840 6030bff7c67d71c0313aa22a1ec5cc2a 188 PANTHER PTHR35023 1 187 1.2E-33 T 22-04-2016 PP4_RS10040 ed121095b0b6cd5e9f25ed2a18a75ae6 409 PANTHER PTHR10909 1 396 1.8E-236 T 22-04-2016 PP4_RS10040 ed121095b0b6cd5e9f25ed2a18a75ae6 409 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 245 393 6.5E-32 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS10040 ed121095b0b6cd5e9f25ed2a18a75ae6 409 Gene3D G3DSA:1.10.540.10 1 130 3.8E-39 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS10040 ed121095b0b6cd5e9f25ed2a18a75ae6 409 SUPERFAMILY SSF56645 1 258 3.4E-72 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 PP4_RS10040 ed121095b0b6cd5e9f25ed2a18a75ae6 409 Gene3D G3DSA:1.20.140.10 235 399 1.3E-45 T 22-04-2016 PP4_RS10040 ed121095b0b6cd5e9f25ed2a18a75ae6 409 Gene3D G3DSA:2.40.110.10 131 234 4.5E-40 T 22-04-2016 PP4_RS10040 ed121095b0b6cd5e9f25ed2a18a75ae6 409 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 132 233 1.4E-20 T 22-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 PP4_RS10040 ed121095b0b6cd5e9f25ed2a18a75ae6 409 PANTHER PTHR10909:SF282 1 396 1.8E-236 T 22-04-2016 PP4_RS10040 ed121095b0b6cd5e9f25ed2a18a75ae6 409 SUPERFAMILY SSF47203 243 400 8.38E-44 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS10040 ed121095b0b6cd5e9f25ed2a18a75ae6 409 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 128 5.5E-18 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS22435 2cc24491832dc3be9f7d74310f8722cf 284 Pfam PF12974 ABC transporter, phosphonate, periplasmic substrate-binding protein 30 270 3.9E-67 T 22-04-2016 PP4_RS22435 2cc24491832dc3be9f7d74310f8722cf 284 PANTHER PTHR30024 1 239 6.6E-50 T 22-04-2016 PP4_RS22435 2cc24491832dc3be9f7d74310f8722cf 284 TIGRFAM TIGR01098 3A0109s03R: phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein 9 243 1.4E-71 T 22-04-2016 IPR005770 Phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein GO:0043190|GO:0055085 PP4_RS22435 2cc24491832dc3be9f7d74310f8722cf 284 Gene3D G3DSA:3.40.190.10 47 128 9.5E-4 T 22-04-2016 PP4_RS22435 2cc24491832dc3be9f7d74310f8722cf 284 SUPERFAMILY SSF53850 27 233 6.14E-35 T 22-04-2016 PP4_RS22435 2cc24491832dc3be9f7d74310f8722cf 284 TIGRFAM TIGR04553 ABC_peri_selen: putative selenate ABC transporter periplasmic binding protein 26 284 3.7E-110 T 22-04-2016 IPR030836 Putative selenate ABC transporter periplasmic binding protein PP4_RS22435 2cc24491832dc3be9f7d74310f8722cf 284 PANTHER PTHR30024:SF17 1 239 6.6E-50 T 22-04-2016 PP4_RS22435 2cc24491832dc3be9f7d74310f8722cf 284 Gene3D G3DSA:3.40.190.10 129 229 2.5E-10 T 22-04-2016 PP4_RS08030 8ab5fd693ba7a4b9c7e3032f9e0cf856 249 Pfam PF04654 Protein of unknown function, DUF599 13 223 2.3E-62 T 22-04-2016 IPR006747 Protein of unknown function DUF599 PP4_RS08030 8ab5fd693ba7a4b9c7e3032f9e0cf856 249 PANTHER PTHR31881:SF3 3 234 1.5E-115 T 22-04-2016 PP4_RS08030 8ab5fd693ba7a4b9c7e3032f9e0cf856 249 PANTHER PTHR31881 3 234 1.5E-115 T 22-04-2016 PP4_RS17365 dc86a22ddcc83eae5421ce3c5c626e26 765 PANTHER PTHR30451:SF5 14 765 1.5E-237 T 22-04-2016 PP4_RS17365 dc86a22ddcc83eae5421ce3c5c626e26 765 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 261 271 - T 22-04-2016 IPR018030 Fimbrial membrane usher, conserved site PP4_RS17365 dc86a22ddcc83eae5421ce3c5c626e26 765 Pfam PF13953 PapC C-terminal domain 689 751 1.0E-11 T 22-04-2016 IPR025949 PapC-like, C-terminal domain PP4_RS17365 dc86a22ddcc83eae5421ce3c5c626e26 765 Pfam PF00577 Outer membrane usher protein 246 673 1.7E-29 T 22-04-2016 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 PP4_RS17365 dc86a22ddcc83eae5421ce3c5c626e26 765 PANTHER PTHR30451 14 765 1.5E-237 T 22-04-2016 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 PP4_RS01705 b5e7f5ae63dd447e3ac95d6279708da5 325 Gene3D G3DSA:3.20.20.140 5 324 8.0E-97 T 22-04-2016 PP4_RS01705 b5e7f5ae63dd447e3ac95d6279708da5 325 PANTHER PTHR10443 9 251 2.2E-178 T 22-04-2016 IPR008257 Renal dipeptidase family GO:0006508|GO:0016805 MetaCyc: PWY-7533 PP4_RS01705 b5e7f5ae63dd447e3ac95d6279708da5 325 PANTHER PTHR10443 276 323 2.2E-178 T 22-04-2016 IPR008257 Renal dipeptidase family GO:0006508|GO:0016805 MetaCyc: PWY-7533 PP4_RS01705 b5e7f5ae63dd447e3ac95d6279708da5 325 SUPERFAMILY SSF51556 9 324 8.9E-83 T 22-04-2016 IPR032466 Metal-dependent hydrolase PP4_RS01705 b5e7f5ae63dd447e3ac95d6279708da5 325 Pfam PF01244 Membrane dipeptidase (Peptidase family M19) 6 320 1.2E-95 T 22-04-2016 IPR008257 Renal dipeptidase family GO:0006508|GO:0016805 MetaCyc: PWY-7533 PP4_RS01705 b5e7f5ae63dd447e3ac95d6279708da5 325 PANTHER PTHR10443:SF24 9 251 2.2E-178 T 22-04-2016 PP4_RS01705 b5e7f5ae63dd447e3ac95d6279708da5 325 PANTHER PTHR10443:SF24 276 323 2.2E-178 T 22-04-2016 PP4_RS26165 9d82ce243aa3262ffc749e0625594e7c 351 SUPERFAMILY SSF56784 39 63 4.54E-11 T 22-04-2016 IPR023214 HAD-like domain PP4_RS26165 9d82ce243aa3262ffc749e0625594e7c 351 SUPERFAMILY SSF56784 111 285 4.54E-11 T 22-04-2016 IPR023214 HAD-like domain PP4_RS26165 9d82ce243aa3262ffc749e0625594e7c 351 Gene3D G3DSA:3.40.50.1000 256 286 1.2E-9 T 22-04-2016 IPR023214 HAD-like domain PP4_RS26165 9d82ce243aa3262ffc749e0625594e7c 351 Gene3D G3DSA:3.40.50.1000 42 65 1.2E-9 T 22-04-2016 IPR023214 HAD-like domain PP4_RS26165 9d82ce243aa3262ffc749e0625594e7c 351 Gene3D G3DSA:3.40.50.1000 163 224 1.2E-9 T 22-04-2016 IPR023214 HAD-like domain PP4_RS04420 9bfa6f54410dd2c367c19921b916febe 336 Pfam PF04338 Protein of unknown function, DUF481 128 336 5.7E-49 T 22-04-2016 IPR007433 Protein of unknown function DUF481 PP4_RS22285 5c60d22cc3c11b6c981aea9b92cd18e8 141 Hamap MF_00451 Nucleoside diphosphate kinase [ndk]. 3 138 34.977 T 22-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PP4_RS22285 5c60d22cc3c11b6c981aea9b92cd18e8 141 PANTHER PTHR11349 1 138 3.1E-69 T 22-04-2016 PP4_RS22285 5c60d22cc3c11b6c981aea9b92cd18e8 141 SMART SM00562 3 140 2.1E-83 T 22-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PP4_RS22285 5c60d22cc3c11b6c981aea9b92cd18e8 141 ProSitePatterns PS00469 Nucleoside diphosphate kinases active site. 114 122 - T 22-04-2016 IPR023005 Nucleoside diphosphate kinase, active site KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PP4_RS22285 5c60d22cc3c11b6c981aea9b92cd18e8 141 Gene3D G3DSA:3.30.70.141 1 138 2.3E-57 T 22-04-2016 PP4_RS22285 5c60d22cc3c11b6c981aea9b92cd18e8 141 SUPERFAMILY SSF54919 1 138 4.06E-55 T 22-04-2016 PP4_RS22285 5c60d22cc3c11b6c981aea9b92cd18e8 141 Pfam PF00334 Nucleoside diphosphate kinase 4 137 4.6E-54 T 22-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PP4_RS22285 5c60d22cc3c11b6c981aea9b92cd18e8 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 6 28 3.3E-39 T 22-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PP4_RS22285 5c60d22cc3c11b6c981aea9b92cd18e8 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 91 107 3.3E-39 T 22-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PP4_RS22285 5c60d22cc3c11b6c981aea9b92cd18e8 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 50 69 3.3E-39 T 22-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PP4_RS22285 5c60d22cc3c11b6c981aea9b92cd18e8 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 70 87 3.3E-39 T 22-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PP4_RS22285 5c60d22cc3c11b6c981aea9b92cd18e8 141 PRINTS PR01243 Nucleoside diphosphate kinase signature 114 133 3.3E-39 T 22-04-2016 IPR001564 Nucleoside diphosphate kinase GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241 KEGG: 00230+2.7.4.6|KEGG: 00240+2.7.4.6|MetaCyc: PWY-6545|MetaCyc: PWY-7176|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7205|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7221|MetaCyc: PWY-7222|MetaCyc: PWY-7224|MetaCyc: PWY-7226|MetaCyc: PWY-7227 PP4_RS17265 446aaca91c768e264f67d5c93495fb19 344 Pfam PF01757 Acyltransferase family 3 309 1.8E-26 T 22-04-2016 IPR002656 Acyltransferase 3 GO:0016747 PP4_RS17265 446aaca91c768e264f67d5c93495fb19 344 PANTHER PTHR23028:SF53 4 317 1.6E-21 T 22-04-2016 PP4_RS17265 446aaca91c768e264f67d5c93495fb19 344 PANTHER PTHR23028 4 317 1.6E-21 T 22-04-2016 PP4_RS21440 92ce6815aeed3761d43593ba34cffac3 174 Gene3D G3DSA:2.160.10.10 5 167 5.9E-48 T 22-04-2016 PP4_RS21440 92ce6815aeed3761d43593ba34cffac3 174 PANTHER PTHR13061 13 170 2.9E-72 T 22-04-2016 PP4_RS21440 92ce6815aeed3761d43593ba34cffac3 174 SUPERFAMILY SSF51161 4 167 1.37E-47 T 22-04-2016 IPR011004 Trimeric LpxA-like PP4_RS21440 92ce6815aeed3761d43593ba34cffac3 174 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 87 121 2.0E-8 T 22-04-2016 IPR001451 Hexapeptide repeat PP4_RS14865 034f0a07f70fbb08516e792b9d5a7e2a 650 Gene3D G3DSA:3.50.50.60 614 650 7.1E-20 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS14865 034f0a07f70fbb08516e792b9d5a7e2a 650 Gene3D G3DSA:3.50.50.60 387 480 7.1E-20 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS14865 034f0a07f70fbb08516e792b9d5a7e2a 650 Gene3D G3DSA:3.50.50.60 481 613 4.3E-27 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS14865 034f0a07f70fbb08516e792b9d5a7e2a 650 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 8 339 1.1E-55 T 22-04-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 PP4_RS14865 034f0a07f70fbb08516e792b9d5a7e2a 650 SUPERFAMILY SSF51395 3 368 9.92E-90 T 22-04-2016 PP4_RS14865 034f0a07f70fbb08516e792b9d5a7e2a 650 Gene3D G3DSA:3.20.20.70 2 377 6.1E-102 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS14865 034f0a07f70fbb08516e792b9d5a7e2a 650 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 389 408 3.6E-7 T 22-04-2016 PP4_RS14865 034f0a07f70fbb08516e792b9d5a7e2a 650 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 471 489 3.6E-7 T 22-04-2016 PP4_RS14865 034f0a07f70fbb08516e792b9d5a7e2a 650 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 599 615 3.6E-7 T 22-04-2016 PP4_RS14865 034f0a07f70fbb08516e792b9d5a7e2a 650 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 388 623 4.8E-10 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS14865 034f0a07f70fbb08516e792b9d5a7e2a 650 SUPERFAMILY SSF51905 365 649 2.59E-30 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS14865 034f0a07f70fbb08516e792b9d5a7e2a 650 PANTHER PTHR22893 5 429 4.1E-186 T 22-04-2016 PP4_RS14865 034f0a07f70fbb08516e792b9d5a7e2a 650 PANTHER PTHR22893:SF7 5 429 4.1E-186 T 22-04-2016 PP4_RS17970 07264def958208d2ba94890ce1e21108 257 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 11 191 1.0E-5 T 22-04-2016 PP4_RS17970 07264def958208d2ba94890ce1e21108 257 PANTHER PTHR24322 15 144 2.0E-57 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS17970 07264def958208d2ba94890ce1e21108 257 PANTHER PTHR24322 160 192 2.0E-57 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS17970 07264def958208d2ba94890ce1e21108 257 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 147 175 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PP4_RS17970 07264def958208d2ba94890ce1e21108 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 181 198 5.3E-38 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS17970 07264def958208d2ba94890ce1e21108 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 5.3E-38 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS17970 07264def958208d2ba94890ce1e21108 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 5.3E-38 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS17970 07264def958208d2ba94890ce1e21108 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 5.3E-38 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS17970 07264def958208d2ba94890ce1e21108 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 5.3E-38 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS17970 07264def958208d2ba94890ce1e21108 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 5.3E-38 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS17970 07264def958208d2ba94890ce1e21108 257 SUPERFAMILY SSF51735 10 253 1.21E-82 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS17970 07264def958208d2ba94890ce1e21108 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 7.3E-14 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS17970 07264def958208d2ba94890ce1e21108 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 7.3E-14 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS17970 07264def958208d2ba94890ce1e21108 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 7.3E-14 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS17970 07264def958208d2ba94890ce1e21108 257 Gene3D G3DSA:3.40.50.720 3 254 7.7E-87 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS17970 07264def958208d2ba94890ce1e21108 257 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 251 1.1E-65 T 22-04-2016 PP4_RS26640 09fd8f8be1dc0b62818abfd97841c188 106 PANTHER PTHR41791 7 105 9.4E-22 T 22-04-2016 PP4_RS26640 09fd8f8be1dc0b62818abfd97841c188 106 PANTHER PTHR41791:SF1 7 105 9.4E-22 T 22-04-2016 PP4_RS26640 09fd8f8be1dc0b62818abfd97841c188 106 PIRSF PIRSF028744 1 105 1.5E-38 T 22-04-2016 IPR014056 Addiction module killer protein, predicted PP4_RS26640 09fd8f8be1dc0b62818abfd97841c188 106 TIGRFAM TIGR02683 upstrm_HI1419: putative addiction module killer protein 10 101 1.7E-35 T 22-04-2016 IPR014056 Addiction module killer protein, predicted PP4_RS19010 32810c5f1c00a1af2a4834838b1e3c6c 147 PANTHER PTHR23091 1 126 2.1E-26 T 22-04-2016 PP4_RS19010 32810c5f1c00a1af2a4834838b1e3c6c 147 Pfam PF13673 Acetyltransferase (GNAT) domain 53 126 9.1E-18 T 22-04-2016 IPR000182 GNAT domain GO:0008080 PP4_RS19010 32810c5f1c00a1af2a4834838b1e3c6c 147 PANTHER PTHR23091:SF240 1 126 2.1E-26 T 22-04-2016 PP4_RS19010 32810c5f1c00a1af2a4834838b1e3c6c 147 Gene3D G3DSA:3.40.630.30 1 144 6.4E-29 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS19010 32810c5f1c00a1af2a4834838b1e3c6c 147 SUPERFAMILY SSF55729 1 143 9.22E-29 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS02775 027f1ce5a3b7ab5f2e6b8bb491eaea66 227 Pfam PF03922 OmpW family 24 227 5.0E-69 T 22-04-2016 IPR005618 Outer membrane protein, OmpW GO:0019867 PP4_RS02775 027f1ce5a3b7ab5f2e6b8bb491eaea66 227 PANTHER PTHR36920 1 227 2.5E-77 T 22-04-2016 PP4_RS02775 027f1ce5a3b7ab5f2e6b8bb491eaea66 227 SUPERFAMILY SSF56925 24 227 5.76E-29 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 PP4_RS02775 027f1ce5a3b7ab5f2e6b8bb491eaea66 227 Gene3D G3DSA:2.40.160.20 24 227 1.7E-66 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 PP4_RS02775 027f1ce5a3b7ab5f2e6b8bb491eaea66 227 PANTHER PTHR36920:SF1 1 227 2.5E-77 T 22-04-2016 PP4_RS02775 027f1ce5a3b7ab5f2e6b8bb491eaea66 227 ProSitePatterns PS00695 Enterobacterial virulence outer membrane protein signature 2. 219 227 - T 22-04-2016 IPR000758 Virulence-related outer membrane protein GO:0009279 PP4_RS12770 4da81d53f400b931e537f7d055a6fa9a 636 SUPERFAMILY SSF52540 311 628 1.78E-27 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS12770 4da81d53f400b931e537f7d055a6fa9a 636 SUPERFAMILY SSF52540 149 264 1.78E-27 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS12770 4da81d53f400b931e537f7d055a6fa9a 636 Gene3D G3DSA:3.40.50.300 141 243 3.7E-16 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS12770 4da81d53f400b931e537f7d055a6fa9a 636 Gene3D G3DSA:3.40.50.300 356 421 3.7E-16 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS12770 4da81d53f400b931e537f7d055a6fa9a 636 Pfam PF13604 AAA domain 149 222 1.7E-7 T 22-04-2016 PP4_RS07070 e2d0b50b18c46377a2b87914e6c6606a 520 Gene3D G3DSA:1.20.1330.10 425 468 4.8E-25 T 22-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 PP4_RS07070 e2d0b50b18c46377a2b87914e6c6606a 520 Gene3D G3DSA:1.20.1330.10 53 168 4.8E-25 T 22-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 PP4_RS07070 e2d0b50b18c46377a2b87914e6c6606a 520 PANTHER PTHR30244 2 185 1.4E-46 T 22-04-2016 PP4_RS07070 e2d0b50b18c46377a2b87914e6c6606a 520 PANTHER PTHR30244 345 518 1.4E-46 T 22-04-2016 PP4_RS07070 e2d0b50b18c46377a2b87914e6c6606a 520 SUPERFAMILY SSF64518 218 520 8.24E-75 T 22-04-2016 PP4_RS07070 e2d0b50b18c46377a2b87914e6c6606a 520 SUPERFAMILY SSF64518 2 188 8.24E-75 T 22-04-2016 PP4_RS07070 e2d0b50b18c46377a2b87914e6c6606a 520 Pfam PF00669 Bacterial flagellin N-terminal helical region 3 140 3.7E-19 T 22-04-2016 IPR001029 Flagellin, D0/D1 domain GO:0005198|GO:0071973 PP4_RS07070 e2d0b50b18c46377a2b87914e6c6606a 520 PANTHER PTHR30244:SF5 2 185 1.4E-46 T 22-04-2016 PP4_RS07070 e2d0b50b18c46377a2b87914e6c6606a 520 PANTHER PTHR30244:SF5 345 518 1.4E-46 T 22-04-2016 PP4_RS07070 e2d0b50b18c46377a2b87914e6c6606a 520 TIGRFAM TIGR02550 flagell_flgL: flagellar hook-associated protein 3 2 245 5.6E-57 T 22-04-2016 IPR013384 Flagellar hook-associated protein 3 GO:0009424|GO:0071973 PP4_RS02070 0565a6c5a949343b22cc8ae35c41964c 251 Pfam PF03070 TENA/THI-4/PQQC family 14 223 2.8E-63 T 22-04-2016 IPR004305 Thiaminase-2/PQQC PP4_RS02070 0565a6c5a949343b22cc8ae35c41964c 251 PANTHER PTHR40279 7 250 1.9E-147 T 22-04-2016 PP4_RS02070 0565a6c5a949343b22cc8ae35c41964c 251 Gene3D G3DSA:1.20.910.10 6 250 3.6E-124 T 22-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 PP4_RS02070 0565a6c5a949343b22cc8ae35c41964c 251 PANTHER PTHR40279:SF2 7 250 1.9E-147 T 22-04-2016 PP4_RS02070 0565a6c5a949343b22cc8ae35c41964c 251 Hamap MF_00654 Pyrroloquinoline-quinone synthase [pqqC]. 1 251 140.874 T 22-04-2016 IPR011845 Coenzyme PQQ biosynthesis protein C GO:0018189|GO:0055114 MetaCyc: PWY-6420|UniPathway: UPA00539 PP4_RS02070 0565a6c5a949343b22cc8ae35c41964c 251 SUPERFAMILY SSF48613 5 249 5.44E-81 T 22-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 PP4_RS02070 0565a6c5a949343b22cc8ae35c41964c 251 TIGRFAM TIGR02111 PQQ_syn_pqqC: coenzyme PQQ biosynthesis protein C 7 241 1.3E-127 T 22-04-2016 IPR011845 Coenzyme PQQ biosynthesis protein C GO:0018189|GO:0055114 MetaCyc: PWY-6420|UniPathway: UPA00539 PP4_RS18880 5d31e780e085f612a4f3b24a34c9bd61 341 ProSitePatterns PS00911 Dihydroorotate dehydrogenase signature 1. 79 98 - T 22-04-2016 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 PP4_RS18880 5d31e780e085f612a4f3b24a34c9bd61 341 TIGRFAM TIGR01036 pyrD_sub2: dihydroorotate dehydrogenase (fumarate) 2 337 1.7E-126 T 22-04-2016 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|UniPathway: UPA00070 PP4_RS18880 5d31e780e085f612a4f3b24a34c9bd61 341 Pfam PF01180 Dihydroorotate dehydrogenase 44 335 4.5E-84 T 22-04-2016 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 PP4_RS18880 5d31e780e085f612a4f3b24a34c9bd61 341 Hamap MF_00225 Dihydroorotate dehydrogenase (quinone) [pyrD]. 1 335 50.308 T 22-04-2016 IPR005719 Dihydroorotate dehydrogenase, class 2 GO:0004152|GO:0006207|GO:0016020|GO:0055114 KEGG: 00240+1.3.5.2|MetaCyc: PWY-5686|UniPathway: UPA00070 PP4_RS18880 5d31e780e085f612a4f3b24a34c9bd61 341 SUPERFAMILY SSF51395 1 335 3.33E-104 T 22-04-2016 PP4_RS18880 5d31e780e085f612a4f3b24a34c9bd61 341 Gene3D G3DSA:3.20.20.70 1 337 3.0E-122 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS18880 5d31e780e085f612a4f3b24a34c9bd61 341 PANTHER PTHR11938 40 330 1.5E-92 T 22-04-2016 PP4_RS18880 5d31e780e085f612a4f3b24a34c9bd61 341 PIRSF PIRSF000164 15 340 7.1E-92 T 22-04-2016 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 Reactome: REACT_1698 PP4_RS01750 bd31c8d7700040a6edd173165c604aa2 541 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 328 539 1.5E-49 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS01750 bd31c8d7700040a6edd173165c604aa2 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 377 404 3.4E-21 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS01750 bd31c8d7700040a6edd173165c604aa2 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 406 435 3.4E-21 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS01750 bd31c8d7700040a6edd173165c604aa2 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 6 31 3.4E-21 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS01750 bd31c8d7700040a6edd173165c604aa2 541 SMART SM00283 279 540 6.1E-80 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS01750 bd31c8d7700040a6edd173165c604aa2 541 PANTHER PTHR32089 123 541 8.2E-125 T 22-04-2016 PP4_RS01750 bd31c8d7700040a6edd173165c604aa2 541 SMART SM00304 212 264 5.3E-9 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS01750 bd31c8d7700040a6edd173165c604aa2 541 Pfam PF00672 HAMP domain 193 261 6.5E-13 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS01750 bd31c8d7700040a6edd173165c604aa2 541 SUPERFAMILY SSF58104 232 541 8.89E-77 T 22-04-2016 PP4_RS01750 bd31c8d7700040a6edd173165c604aa2 541 Gene3D G3DSA:1.10.287.950 293 509 1.5E-58 T 22-04-2016 PP4_RS01750 bd31c8d7700040a6edd173165c604aa2 541 Pfam PF12729 Four helix bundle sensory module for signal transduction 5 185 2.8E-23 T 22-04-2016 IPR024478 4HB MCP domain PP4_RS01750 bd31c8d7700040a6edd173165c604aa2 541 PANTHER PTHR32089:SF64 123 541 8.2E-125 T 22-04-2016 PP4_RS20910 ba673aa88ce6a0bd4b4ae68aa3e2ea10 352 SUPERFAMILY SSF55120 9 339 5.04E-95 T 22-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS20910 ba673aa88ce6a0bd4b4ae68aa3e2ea10 352 ProSitePatterns PS01268 Uncharacterized protein family UPF0024 signature. 78 91 - T 22-04-2016 IPR020119 Pseudouridine synthase TruD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS20910 ba673aa88ce6a0bd4b4ae68aa3e2ea10 352 Hamap MF_01082 tRNA pseudouridine synthase D [truD]. 6 342 28.251 T 22-04-2016 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS20910 ba673aa88ce6a0bd4b4ae68aa3e2ea10 352 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 190 337 1.2E-14 T 22-04-2016 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS20910 ba673aa88ce6a0bd4b4ae68aa3e2ea10 352 Pfam PF01142 tRNA pseudouridine synthase D (TruD) 19 175 1.0E-38 T 22-04-2016 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS20910 ba673aa88ce6a0bd4b4ae68aa3e2ea10 352 PANTHER PTHR13326 11 338 6.0E-61 T 22-04-2016 IPR001656 Pseudouridine synthase, TruD GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS05930 c41ea61495d51c9e8bd52a69d3159d0a 166 SUPERFAMILY SSF103088 59 165 3.53E-35 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS05930 c41ea61495d51c9e8bd52a69d3159d0a 166 TIGRFAM TIGR02802 Pal_lipo: peptidoglycan-associated lipoprotein 65 164 6.0E-42 T 22-04-2016 IPR014169 Peptidoglycan-associated lipoprotein GO:0009279 PP4_RS05930 c41ea61495d51c9e8bd52a69d3159d0a 166 ProSitePatterns PS01068 OmpA-like domain. 98 142 - T 22-04-2016 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 PP4_RS05930 c41ea61495d51c9e8bd52a69d3159d0a 166 PRINTS PR01021 OMPA domain signature 67 89 6.2E-20 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PP4_RS05930 c41ea61495d51c9e8bd52a69d3159d0a 166 PRINTS PR01021 OMPA domain signature 96 111 6.2E-20 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PP4_RS05930 c41ea61495d51c9e8bd52a69d3159d0a 166 PRINTS PR01021 OMPA domain signature 111 127 6.2E-20 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PP4_RS05930 c41ea61495d51c9e8bd52a69d3159d0a 166 Gene3D G3DSA:3.30.1330.60 57 165 7.3E-36 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS05930 c41ea61495d51c9e8bd52a69d3159d0a 166 PANTHER PTHR30128:SF18 50 164 4.7E-52 T 22-04-2016 PP4_RS05930 c41ea61495d51c9e8bd52a69d3159d0a 166 PANTHER PTHR30128 50 164 4.7E-52 T 22-04-2016 PP4_RS05930 c41ea61495d51c9e8bd52a69d3159d0a 166 Pfam PF00691 OmpA family 66 160 8.1E-25 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS18310 c11fdf9cabd0f6ec210a9cbdef7e3a6d 694 Pfam PF00593 TonB dependent receptor 464 693 1.3E-25 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS18310 c11fdf9cabd0f6ec210a9cbdef7e3a6d 694 Gene3D G3DSA:2.170.130.10 37 161 1.1E-24 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS18310 c11fdf9cabd0f6ec210a9cbdef7e3a6d 694 SUPERFAMILY SSF56935 48 694 4.71E-110 T 22-04-2016 PP4_RS18310 c11fdf9cabd0f6ec210a9cbdef7e3a6d 694 Gene3D G3DSA:2.40.170.20 169 694 8.0E-113 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS18310 c11fdf9cabd0f6ec210a9cbdef7e3a6d 694 PANTHER PTHR32552 8 694 2.3E-152 T 22-04-2016 PP4_RS18310 c11fdf9cabd0f6ec210a9cbdef7e3a6d 694 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 57 692 6.8E-94 T 22-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 PP4_RS18310 c11fdf9cabd0f6ec210a9cbdef7e3a6d 694 PANTHER PTHR32552:SF37 8 694 2.3E-152 T 22-04-2016 PP4_RS18310 c11fdf9cabd0f6ec210a9cbdef7e3a6d 694 Pfam PF07715 TonB-dependent Receptor Plug Domain 55 152 3.3E-10 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS18650 a790785872f03e4153a2ad204db295cf 235 SUPERFAMILY SSF46689 4 74 3.39E-18 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS18650 a790785872f03e4153a2ad204db295cf 235 PANTHER PTHR30055 4 171 1.2E-45 T 22-04-2016 PP4_RS18650 a790785872f03e4153a2ad204db295cf 235 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 54 3.5E-11 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS18650 a790785872f03e4153a2ad204db295cf 235 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 10 23 3.5E-11 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS18650 a790785872f03e4153a2ad204db295cf 235 ProSitePatterns PS01081 TetR-type HTH domain signature. 22 53 - T 22-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site PP4_RS18650 a790785872f03e4153a2ad204db295cf 235 Pfam PF00440 Bacterial regulatory proteins, tetR family 10 56 1.5E-15 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS18650 a790785872f03e4153a2ad204db295cf 235 PANTHER PTHR30055:SF73 4 171 1.2E-45 T 22-04-2016 PP4_RS18650 a790785872f03e4153a2ad204db295cf 235 Gene3D G3DSA:1.10.357.10 3 208 2.7E-43 T 22-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PP4_RS18650 a790785872f03e4153a2ad204db295cf 235 SUPERFAMILY SSF48498 81 208 1.22E-40 T 22-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal PP4_RS09580 d8d9a8f2dc9f8b8a6ce4aadc4faa75be 498 PANTHER PTHR11785 21 492 6.9E-243 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS09580 d8d9a8f2dc9f8b8a6ce4aadc4faa75be 498 Pfam PF13520 Amino acid permease 17 443 3.1E-29 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS09580 d8d9a8f2dc9f8b8a6ce4aadc4faa75be 498 PIRSF PIRSF006060 1 484 1.5E-62 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS09580 d8d9a8f2dc9f8b8a6ce4aadc4faa75be 498 PANTHER PTHR11785:SF319 21 492 6.9E-243 T 22-04-2016 PP4_RS16860 4f39de49c36f2f92c0edb5958feb712d 178 PANTHER PTHR30173 8 167 3.3E-24 T 22-04-2016 PP4_RS16860 4f39de49c36f2f92c0edb5958feb712d 178 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 14 164 2.8E-19 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS16860 4f39de49c36f2f92c0edb5958feb712d 178 SUPERFAMILY SSF88946 9 75 1.1E-10 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS16860 4f39de49c36f2f92c0edb5958feb712d 178 Pfam PF04542 Sigma-70 region 2 16 78 2.6E-6 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS16860 4f39de49c36f2f92c0edb5958feb712d 178 SUPERFAMILY SSF88659 104 166 2.4E-14 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS16860 4f39de49c36f2f92c0edb5958feb712d 178 Gene3D G3DSA:1.10.10.10 106 168 3.8E-16 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16860 4f39de49c36f2f92c0edb5958feb712d 178 Pfam PF08281 Sigma-70, region 4 110 161 8.2E-15 T 22-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS16860 4f39de49c36f2f92c0edb5958feb712d 178 Gene3D G3DSA:1.10.1740.10 12 78 6.1E-9 T 22-04-2016 PP4_RS07075 9bef5e66ed8bccb0b3ca1c84f9073bf9 309 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 221 306 5.9E-23 T 22-04-2016 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 PP4_RS07075 9bef5e66ed8bccb0b3ca1c84f9073bf9 309 PANTHER PTHR34069:SF2 1 306 8.5E-58 T 22-04-2016 PP4_RS07075 9bef5e66ed8bccb0b3ca1c84f9073bf9 309 PANTHER PTHR34069 1 306 8.5E-58 T 22-04-2016 PP4_RS07075 9bef5e66ed8bccb0b3ca1c84f9073bf9 309 Gene3D G3DSA:3.40.47.10 2 160 3.4E-31 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS07075 9bef5e66ed8bccb0b3ca1c84f9073bf9 309 Gene3D G3DSA:3.40.47.10 161 306 6.8E-37 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS07075 9bef5e66ed8bccb0b3ca1c84f9073bf9 309 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 108 185 2.9E-18 T 22-04-2016 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 PP4_RS07075 9bef5e66ed8bccb0b3ca1c84f9073bf9 309 SUPERFAMILY SSF53901 4 306 3.34E-40 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS22505 912f1b8feea0bad2aa2214cad14ce5da 168 Pfam PF02600 Disulfide bond formation protein DsbB 12 157 3.0E-36 T 22-04-2016 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 PP4_RS22505 912f1b8feea0bad2aa2214cad14ce5da 168 Hamap MF_00286 Disulfide bond formation protein B [dsbB]. 7 167 19.043 T 22-04-2016 IPR022920 Disulphide bond formation protein DsbB PP4_RS22505 912f1b8feea0bad2aa2214cad14ce5da 168 Gene3D G3DSA:1.20.1550.10 1 167 1.7E-50 T 22-04-2016 IPR023380 Disulphide bond formation protein DsbB-like domain PP4_RS22505 912f1b8feea0bad2aa2214cad14ce5da 168 PANTHER PTHR36570 7 165 1.5E-17 T 22-04-2016 PP4_RS22505 912f1b8feea0bad2aa2214cad14ce5da 168 SUPERFAMILY SSF158442 15 157 7.98E-36 T 22-04-2016 PP4_RS04555 87638eeb5684713f108163c3218f1a2a 100 Pfam PF12840 Helix-turn-helix domain 6 77 7.9E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS04555 87638eeb5684713f108163c3218f1a2a 100 SUPERFAMILY SSF46785 3 98 3.5E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS04555 87638eeb5684713f108163c3218f1a2a 100 SMART SM00418 7 98 1.9E-13 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 PP4_RS04555 87638eeb5684713f108163c3218f1a2a 100 Gene3D G3DSA:1.10.10.10 4 98 2.5E-32 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS04555 87638eeb5684713f108163c3218f1a2a 100 PANTHER PTHR33154 3 100 8.0E-24 T 22-04-2016 PP4_RS16010 31e505ecffee25078ddcb97383b550a6 343 Gene3D G3DSA:3.40.190.10 28 173 2.2E-48 T 22-04-2016 PP4_RS16010 31e505ecffee25078ddcb97383b550a6 343 PANTHER PTHR30570:SF0 1 343 4.0E-112 T 22-04-2016 PP4_RS16010 31e505ecffee25078ddcb97383b550a6 343 SUPERFAMILY SSF53850 30 342 1.11E-88 T 22-04-2016 PP4_RS16010 31e505ecffee25078ddcb97383b550a6 343 TIGRFAM TIGR00975 3a0107s03: phosphate ABC transporter, phosphate-binding protein PstS 30 342 2.3E-133 T 22-04-2016 IPR005673 ABC transporter, phosphate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 PP4_RS16010 31e505ecffee25078ddcb97383b550a6 343 PANTHER PTHR30570 1 343 4.0E-112 T 22-04-2016 PP4_RS16010 31e505ecffee25078ddcb97383b550a6 343 PIRSF PIRSF002756 2 343 5.1E-103 T 22-04-2016 IPR005673 ABC transporter, phosphate-binding protein PstS GO:0035435|GO:0042301|GO:0043190 PP4_RS16010 31e505ecffee25078ddcb97383b550a6 343 Gene3D G3DSA:3.40.190.10 188 338 7.3E-25 T 22-04-2016 PP4_RS16010 31e505ecffee25078ddcb97383b550a6 343 Pfam PF12849 PBP superfamily domain 25 304 9.7E-61 T 22-04-2016 IPR024370 PBP domain PP4_RS21800 d7d05ddd20acfcc99903dfc0242a9c5e 497 SUPERFAMILY SSF53187 178 494 7.22E-127 T 22-04-2016 PP4_RS21800 d7d05ddd20acfcc99903dfc0242a9c5e 497 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 3 496 40.53 T 22-04-2016 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 PP4_RS21800 d7d05ddd20acfcc99903dfc0242a9c5e 497 PANTHER PTHR11963:SF13 7 496 6.4E-224 T 22-04-2016 PP4_RS21800 d7d05ddd20acfcc99903dfc0242a9c5e 497 PRINTS PR00481 Cytosol aminopeptidase signature 262 279 3.7E-54 T 22-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 PP4_RS21800 d7d05ddd20acfcc99903dfc0242a9c5e 497 PRINTS PR00481 Cytosol aminopeptidase signature 284 305 3.7E-54 T 22-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 PP4_RS21800 d7d05ddd20acfcc99903dfc0242a9c5e 497 PRINTS PR00481 Cytosol aminopeptidase signature 343 363 3.7E-54 T 22-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 PP4_RS21800 d7d05ddd20acfcc99903dfc0242a9c5e 497 PRINTS PR00481 Cytosol aminopeptidase signature 371 386 3.7E-54 T 22-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 PP4_RS21800 d7d05ddd20acfcc99903dfc0242a9c5e 497 PRINTS PR00481 Cytosol aminopeptidase signature 321 342 3.7E-54 T 22-04-2016 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 PP4_RS21800 d7d05ddd20acfcc99903dfc0242a9c5e 497 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 185 487 1.3E-122 T 22-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 PP4_RS21800 d7d05ddd20acfcc99903dfc0242a9c5e 497 Gene3D G3DSA:3.40.220.10 1 160 4.1E-51 T 22-04-2016 PP4_RS21800 d7d05ddd20acfcc99903dfc0242a9c5e 497 Gene3D G3DSA:3.40.630.10 170 494 5.0E-142 T 22-04-2016 PP4_RS21800 d7d05ddd20acfcc99903dfc0242a9c5e 497 PANTHER PTHR11963 7 496 6.4E-224 T 22-04-2016 PP4_RS21800 d7d05ddd20acfcc99903dfc0242a9c5e 497 SUPERFAMILY SSF52949 1 183 5.59E-39 T 22-04-2016 PP4_RS21800 d7d05ddd20acfcc99903dfc0242a9c5e 497 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 347 354 - T 22-04-2016 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 PP4_RS21800 d7d05ddd20acfcc99903dfc0242a9c5e 497 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 19 148 7.3E-30 T 22-04-2016 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 PP4_RS02715 c70eca07fab0ab9043c74ab2df289ae7 640 Gene3D G3DSA:1.10.10.10 508 567 1.4E-10 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS02715 c70eca07fab0ab9043c74ab2df289ae7 640 SUPERFAMILY SSF50465 272 367 4.68E-18 T 22-04-2016 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal PP4_RS02715 c70eca07fab0ab9043c74ab2df289ae7 640 SUPERFAMILY SSF50447 173 261 9.06E-15 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain PP4_RS02715 c70eca07fab0ab9043c74ab2df289ae7 640 PANTHER PTHR23115 1 393 5.2E-121 T 22-04-2016 PP4_RS02715 c70eca07fab0ab9043c74ab2df289ae7 640 SUPERFAMILY SSF46785 580 629 1.25E-11 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS02715 c70eca07fab0ab9043c74ab2df289ae7 640 SUPERFAMILY SSF46785 506 568 5.35E-12 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS02715 c70eca07fab0ab9043c74ab2df289ae7 640 PANTHER PTHR23115:SF129 1 393 5.2E-121 T 22-04-2016 PP4_RS02715 c70eca07fab0ab9043c74ab2df289ae7 640 Pfam PF09107 Elongation factor SelB, winged helix 587 627 8.9E-18 T 22-04-2016 IPR015191 Translation elongation factor SelB, winged helix, type 3 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 PP4_RS02715 c70eca07fab0ab9043c74ab2df289ae7 640 Gene3D G3DSA:1.10.10.10 571 628 1.4E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS02715 c70eca07fab0ab9043c74ab2df289ae7 640 Gene3D G3DSA:2.40.30.10 295 354 6.0E-4 T 22-04-2016 PP4_RS02715 c70eca07fab0ab9043c74ab2df289ae7 640 Pfam PF00009 Elongation factor Tu GTP binding domain 2 164 3.8E-31 T 22-04-2016 PP4_RS02715 c70eca07fab0ab9043c74ab2df289ae7 640 Pfam PF09106 Elongation factor SelB, winged helix 443 499 2.3E-16 T 22-04-2016 IPR015190 Translation elongation factor SelB, winged helix, type 2 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 PP4_RS02715 c70eca07fab0ab9043c74ab2df289ae7 640 SUPERFAMILY SSF52540 2 192 2.76E-41 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS02715 c70eca07fab0ab9043c74ab2df289ae7 640 Gene3D G3DSA:2.40.30.10 177 294 3.2E-19 T 22-04-2016 PP4_RS02715 c70eca07fab0ab9043c74ab2df289ae7 640 Gene3D G3DSA:1.10.10.10 434 500 2.6E-15 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS02715 c70eca07fab0ab9043c74ab2df289ae7 640 TIGRFAM TIGR00475 selB: selenocysteine-specific translation elongation factor 1 628 7.6E-135 T 22-04-2016 IPR004535 Translation elongation factor, selenocysteine-specific GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 PP4_RS02715 c70eca07fab0ab9043c74ab2df289ae7 640 SUPERFAMILY SSF46785 434 505 5.44E-16 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS02715 c70eca07fab0ab9043c74ab2df289ae7 640 Gene3D G3DSA:3.40.50.300 3 163 1.1E-40 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS02715 c70eca07fab0ab9043c74ab2df289ae7 640 PRINTS PR00315 GTP-binding elongation factor signature 55 65 4.9E-6 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS02715 c70eca07fab0ab9043c74ab2df289ae7 640 PRINTS PR00315 GTP-binding elongation factor signature 2 15 4.9E-6 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS02715 c70eca07fab0ab9043c74ab2df289ae7 640 PRINTS PR00315 GTP-binding elongation factor signature 71 82 4.9E-6 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS02715 c70eca07fab0ab9043c74ab2df289ae7 640 PRINTS PR00315 GTP-binding elongation factor signature 108 117 4.9E-6 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS08330 43fb09513a6fed2246621b79d0feba0f 459 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 182 197 - T 22-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 PP4_RS08330 43fb09513a6fed2246621b79d0feba0f 459 SMART SM00928 346 391 1.9E-21 T 22-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 PP4_RS08330 43fb09513a6fed2246621b79d0feba0f 459 TIGRFAM TIGR01959 nuoF_fam: NADH oxidoreductase (quinone), F subunit 21 433 3.9E-200 T 22-04-2016 IPR011537 NADH ubiquinone oxidoreductase, F subunit GO:0010181|GO:0016651|GO:0051287|GO:0051539|GO:0055114 PP4_RS08330 43fb09513a6fed2246621b79d0feba0f 459 SUPERFAMILY SSF142984 258 341 5.75E-19 T 22-04-2016 PP4_RS08330 43fb09513a6fed2246621b79d0feba0f 459 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 349 431 1.1E-23 T 22-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 PP4_RS08330 43fb09513a6fed2246621b79d0feba0f 459 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 359 370 - T 22-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 PP4_RS08330 43fb09513a6fed2246621b79d0feba0f 459 SUPERFAMILY SSF142019 24 253 5.75E-87 T 22-04-2016 PP4_RS08330 43fb09513a6fed2246621b79d0feba0f 459 PANTHER PTHR11780 14 434 1.4E-213 T 22-04-2016 PP4_RS08330 43fb09513a6fed2246621b79d0feba0f 459 SUPERFAMILY SSF140490 342 433 1.24E-29 T 22-04-2016 PP4_RS08330 43fb09513a6fed2246621b79d0feba0f 459 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 62 234 1.7E-52 T 22-04-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain PP4_RS17070 dd4e3dd6a8a86b478f0e6253599d92f6 523 SUPERFAMILY SSF55073 373 522 6.43E-43 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS17070 dd4e3dd6a8a86b478f0e6253599d92f6 523 PANTHER PTHR10799 397 522 2.5E-27 T 22-04-2016 PP4_RS17070 dd4e3dd6a8a86b478f0e6253599d92f6 523 PANTHER PTHR10799 301 351 2.5E-27 T 22-04-2016 PP4_RS17070 dd4e3dd6a8a86b478f0e6253599d92f6 523 PANTHER PTHR10799:SF750 397 522 2.5E-27 T 22-04-2016 PP4_RS17070 dd4e3dd6a8a86b478f0e6253599d92f6 523 PANTHER PTHR10799:SF750 301 351 2.5E-27 T 22-04-2016 PP4_RS17070 dd4e3dd6a8a86b478f0e6253599d92f6 523 SMART SM00267 357 523 2.0E-59 T 22-04-2016 IPR000160 GGDEF domain PP4_RS17070 dd4e3dd6a8a86b478f0e6253599d92f6 523 SUPERFAMILY SSF103190 79 182 3.41E-10 T 22-04-2016 IPR029151 Periplasmic sensor domain-like PP4_RS17070 dd4e3dd6a8a86b478f0e6253599d92f6 523 Gene3D G3DSA:3.30.450.20 149 284 9.0E-16 T 22-04-2016 PP4_RS17070 dd4e3dd6a8a86b478f0e6253599d92f6 523 Pfam PF00990 Diguanylate cyclase, GGDEF domain 368 519 3.2E-40 T 22-04-2016 IPR000160 GGDEF domain PP4_RS17070 dd4e3dd6a8a86b478f0e6253599d92f6 523 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 364 522 5.9E-43 T 22-04-2016 IPR000160 GGDEF domain PP4_RS17070 dd4e3dd6a8a86b478f0e6253599d92f6 523 Pfam PF02743 Cache domain 88 270 4.3E-22 T 22-04-2016 IPR033479 Double Cache domain 1 PP4_RS17070 dd4e3dd6a8a86b478f0e6253599d92f6 523 SUPERFAMILY SSF103190 189 269 2.31E-10 T 22-04-2016 IPR029151 Periplasmic sensor domain-like PP4_RS17070 dd4e3dd6a8a86b478f0e6253599d92f6 523 Gene3D G3DSA:3.30.70.270 370 522 1.6E-49 T 22-04-2016 PP4_RS20365 3f71230dfc71bc786fbb3127e0db9a6f 253 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 149 250 9.6E-30 T 22-04-2016 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 PP4_RS20365 3f71230dfc71bc786fbb3127e0db9a6f 253 Gene3D G3DSA:2.160.20.70 137 253 6.5E-36 T 22-04-2016 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 PP4_RS20365 3f71230dfc71bc786fbb3127e0db9a6f 253 Pfam PF05209 Septum formation inhibitor MinC, N-terminal domain 15 115 3.4E-23 T 22-04-2016 IPR007874 Septum formation inhibitor MinC, N-terminal GO:0051302 PP4_RS20365 3f71230dfc71bc786fbb3127e0db9a6f 253 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 15 253 4.6E-81 T 22-04-2016 IPR013033 Septum formation inhibitor MinC GO:0000917|GO:0051726 PP4_RS20365 3f71230dfc71bc786fbb3127e0db9a6f 253 PANTHER PTHR34108 14 253 2.1E-68 T 22-04-2016 PP4_RS20365 3f71230dfc71bc786fbb3127e0db9a6f 253 SUPERFAMILY SSF63848 147 252 2.35E-29 T 22-04-2016 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 PP4_RS20365 3f71230dfc71bc786fbb3127e0db9a6f 253 PANTHER PTHR34108:SF1 14 253 2.1E-68 T 22-04-2016 PP4_RS20365 3f71230dfc71bc786fbb3127e0db9a6f 253 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 15 253 26.446 T 22-04-2016 IPR013033 Septum formation inhibitor MinC GO:0000917|GO:0051726 PP4_RS04795 2e34d24a6733b4c6eca737e4f230ae6b 545 PANTHER PTHR18968:SF13 3 538 2.8E-138 T 22-04-2016 PP4_RS04795 2e34d24a6733b4c6eca737e4f230ae6b 545 SUPERFAMILY SSF52518 2 178 1.45E-50 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS04795 2e34d24a6733b4c6eca737e4f230ae6b 545 PANTHER PTHR18968 3 538 2.8E-138 T 22-04-2016 PP4_RS04795 2e34d24a6733b4c6eca737e4f230ae6b 545 Pfam PF00205 Thiamine pyrophosphate enzyme, central domain 191 324 6.9E-28 T 22-04-2016 IPR012000 Thiamine pyrophosphate enzyme, central domain GO:0000287|GO:0030976 PP4_RS04795 2e34d24a6733b4c6eca737e4f230ae6b 545 Gene3D G3DSA:3.40.50.970 372 537 1.3E-43 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS04795 2e34d24a6733b4c6eca737e4f230ae6b 545 Gene3D G3DSA:3.40.50.1220 186 371 6.1E-39 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain PP4_RS04795 2e34d24a6733b4c6eca737e4f230ae6b 545 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 390 534 1.7E-32 T 22-04-2016 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 PP4_RS04795 2e34d24a6733b4c6eca737e4f230ae6b 545 Gene3D G3DSA:3.40.50.970 3 172 8.1E-56 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS04795 2e34d24a6733b4c6eca737e4f230ae6b 545 SUPERFAMILY SSF52467 156 337 3.85E-38 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain PP4_RS04795 2e34d24a6733b4c6eca737e4f230ae6b 545 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 3 171 1.4E-51 T 22-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 PP4_RS04795 2e34d24a6733b4c6eca737e4f230ae6b 545 SUPERFAMILY SSF52518 360 538 2.68E-43 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS09095 89d79f286545f847714bea4bd6669887 474 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 298 466 1.6E-44 T 22-04-2016 IPR000160 GGDEF domain PP4_RS09095 89d79f286545f847714bea4bd6669887 474 Pfam PF00990 Diguanylate cyclase, GGDEF domain 302 463 1.3E-41 T 22-04-2016 IPR000160 GGDEF domain PP4_RS09095 89d79f286545f847714bea4bd6669887 474 SUPERFAMILY SSF55073 307 465 2.2E-44 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS09095 89d79f286545f847714bea4bd6669887 474 PANTHER PTHR10799:SF750 190 474 1.1E-29 T 22-04-2016 PP4_RS09095 89d79f286545f847714bea4bd6669887 474 PANTHER PTHR10799 190 474 1.1E-29 T 22-04-2016 PP4_RS09095 89d79f286545f847714bea4bd6669887 474 SMART SM00267 291 467 1.4E-57 T 22-04-2016 IPR000160 GGDEF domain PP4_RS09095 89d79f286545f847714bea4bd6669887 474 Gene3D G3DSA:3.30.70.270 304 469 2.4E-51 T 22-04-2016 PP4_RS21150 e3906f6446af59daf3a5662ca79ce2e1 213 Gene3D G3DSA:1.10.10.60 15 64 1.1E-19 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS21150 e3906f6446af59daf3a5662ca79ce2e1 213 SUPERFAMILY SSF48498 88 209 1.33E-8 T 22-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal PP4_RS21150 e3906f6446af59daf3a5662ca79ce2e1 213 PANTHER PTHR30055:SF76 8 213 5.1E-42 T 22-04-2016 PP4_RS21150 e3906f6446af59daf3a5662ca79ce2e1 213 Pfam PF00440 Bacterial regulatory proteins, tetR family 25 68 7.4E-14 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS21150 e3906f6446af59daf3a5662ca79ce2e1 213 Gene3D G3DSA:1.10.357.10 65 212 5.6E-43 T 22-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PP4_RS21150 e3906f6446af59daf3a5662ca79ce2e1 213 Pfam PF14246 AefR-like transcriptional repressor, C-terminal region 157 210 4.3E-14 T 22-04-2016 PP4_RS21150 e3906f6446af59daf3a5662ca79ce2e1 213 SUPERFAMILY SSF46689 15 96 1.3E-17 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS21150 e3906f6446af59daf3a5662ca79ce2e1 213 PANTHER PTHR30055 8 213 5.1E-42 T 22-04-2016 PP4_RS21150 e3906f6446af59daf3a5662ca79ce2e1 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 25 38 2.6E-9 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS21150 e3906f6446af59daf3a5662ca79ce2e1 213 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 46 69 2.6E-9 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS20855 b8ef05879e2df5d1ff5ab4bd06635c96 156 Gene3D G3DSA:1.10.10.10 58 102 2.2E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS20855 b8ef05879e2df5d1ff5ab4bd06635c96 156 Gene3D G3DSA:1.10.10.10 11 56 1.1E-16 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS20855 b8ef05879e2df5d1ff5ab4bd06635c96 156 PANTHER PTHR33602:SF1 10 155 2.4E-36 T 22-04-2016 PP4_RS20855 b8ef05879e2df5d1ff5ab4bd06635c96 156 Hamap MF_01114 Regulatory protein RecX [recX]. 2 155 13.795 T 22-04-2016 IPR003783 Regulatory protein RecX GO:0006282 PP4_RS20855 b8ef05879e2df5d1ff5ab4bd06635c96 156 PANTHER PTHR33602 10 155 2.4E-36 T 22-04-2016 PP4_RS20855 b8ef05879e2df5d1ff5ab4bd06635c96 156 Pfam PF02631 RecX family 33 149 9.3E-31 T 22-04-2016 IPR003783 Regulatory protein RecX GO:0006282 PP4_RS20855 b8ef05879e2df5d1ff5ab4bd06635c96 156 Gene3D G3DSA:1.10.10.10 103 152 3.8E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS09810 4fa031f9c533ca7cb04d4bec22e4f793 275 SUPERFAMILY SSF46894 197 270 4.76E-12 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS09810 4fa031f9c533ca7cb04d4bec22e4f793 275 Pfam PF00196 Bacterial regulatory proteins, luxR family 211 265 1.6E-8 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS09810 4fa031f9c533ca7cb04d4bec22e4f793 275 Gene3D G3DSA:1.10.10.10 206 270 3.7E-12 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS09810 4fa031f9c533ca7cb04d4bec22e4f793 275 SMART SM00421 208 265 5.3E-8 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS21975 3644b00125930a8448d62fdb0e87aa1b 458 Gene3D G3DSA:1.20.200.10 133 396 3.4E-81 T 22-04-2016 PP4_RS21975 3644b00125930a8448d62fdb0e87aa1b 458 Gene3D G3DSA:1.10.275.10 3 132 1.6E-49 T 22-04-2016 IPR024083 Fumarase/histidase, N-terminal PP4_RS21975 3644b00125930a8448d62fdb0e87aa1b 458 PANTHER PTHR11444 3 455 1.9E-285 T 22-04-2016 IPR000362 Fumarate lyase family PP4_RS21975 3644b00125930a8448d62fdb0e87aa1b 458 Hamap MF_00743 Fumarate hydratase class II [fumC]. 4 456 74.969 T 22-04-2016 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 PP4_RS21975 3644b00125930a8448d62fdb0e87aa1b 458 PRINTS PR00145 Argininosuccinate lyase family signature 169 189 3.0E-5 T 22-04-2016 PP4_RS21975 3644b00125930a8448d62fdb0e87aa1b 458 PRINTS PR00145 Argininosuccinate lyase family signature 311 327 3.0E-5 T 22-04-2016 PP4_RS21975 3644b00125930a8448d62fdb0e87aa1b 458 PRINTS PR00145 Argininosuccinate lyase family signature 127 149 3.0E-5 T 22-04-2016 PP4_RS21975 3644b00125930a8448d62fdb0e87aa1b 458 Gene3D G3DSA:1.10.40.30 402 457 6.6E-22 T 22-04-2016 PP4_RS21975 3644b00125930a8448d62fdb0e87aa1b 458 Pfam PF10415 Fumarase C C-terminus 402 454 1.0E-20 T 22-04-2016 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 PP4_RS21975 3644b00125930a8448d62fdb0e87aa1b 458 Pfam PF00206 Lyase 12 336 3.1E-90 T 22-04-2016 IPR022761 Fumarate lyase, N-terminal PP4_RS21975 3644b00125930a8448d62fdb0e87aa1b 458 PRINTS PR00149 Fumarate lyase superfamily signature 265 292 2.3E-28 T 22-04-2016 IPR000362 Fumarate lyase family PP4_RS21975 3644b00125930a8448d62fdb0e87aa1b 458 PRINTS PR00149 Fumarate lyase superfamily signature 174 192 2.3E-28 T 22-04-2016 IPR000362 Fumarate lyase family PP4_RS21975 3644b00125930a8448d62fdb0e87aa1b 458 PRINTS PR00149 Fumarate lyase superfamily signature 311 327 2.3E-28 T 22-04-2016 IPR000362 Fumarate lyase family PP4_RS21975 3644b00125930a8448d62fdb0e87aa1b 458 PRINTS PR00149 Fumarate lyase superfamily signature 128 146 2.3E-28 T 22-04-2016 IPR000362 Fumarate lyase family PP4_RS21975 3644b00125930a8448d62fdb0e87aa1b 458 PANTHER PTHR11444:SF22 3 455 1.9E-285 T 22-04-2016 PP4_RS21975 3644b00125930a8448d62fdb0e87aa1b 458 SUPERFAMILY SSF48557 3 454 4.08E-134 T 22-04-2016 IPR008948 L-Aspartase-like GO:0003824 PP4_RS21975 3644b00125930a8448d62fdb0e87aa1b 458 ProSitePatterns PS00163 Fumarate lyases signature. 311 320 - T 22-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 PP4_RS23665 2840bc77e989fe78de68f4d3861a8ef0 842 SUPERFAMILY SSF50447 744 840 2.16E-30 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain PP4_RS23665 2840bc77e989fe78de68f4d3861a8ef0 842 SUPERFAMILY SSF52540 335 510 8.33E-53 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23665 2840bc77e989fe78de68f4d3861a8ef0 842 SUPERFAMILY SSF46955 3 51 1.59E-11 T 22-04-2016 IPR009061 Putative DNA-binding domain PP4_RS23665 2840bc77e989fe78de68f4d3861a8ef0 842 Gene3D G3DSA:3.40.50.10050 642 721 3.2E-21 T 22-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 PP4_RS23665 2840bc77e989fe78de68f4d3861a8ef0 842 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 261 842 2.6E-258 T 22-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 PP4_RS23665 2840bc77e989fe78de68f4d3861a8ef0 842 Pfam PF00009 Elongation factor Tu GTP binding domain 346 503 1.5E-35 T 22-04-2016 PP4_RS23665 2840bc77e989fe78de68f4d3861a8ef0 842 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 345 501 5.9E-32 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 PP4_RS23665 2840bc77e989fe78de68f4d3861a8ef0 842 PANTHER PTHR23115:SF184 695 840 7.7E-206 T 22-04-2016 PP4_RS23665 2840bc77e989fe78de68f4d3861a8ef0 842 PANTHER PTHR23115:SF184 327 670 7.7E-206 T 22-04-2016 PP4_RS23665 2840bc77e989fe78de68f4d3861a8ef0 842 ProSitePatterns PS01176 Initiation factor 2 signature. 793 815 - T 22-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 PP4_RS23665 2840bc77e989fe78de68f4d3861a8ef0 842 Gene3D G3DSA:3.40.50.300 338 501 3.3E-47 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23665 2840bc77e989fe78de68f4d3861a8ef0 842 SUPERFAMILY SSF52156 623 749 6.54E-34 T 22-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 PP4_RS23665 2840bc77e989fe78de68f4d3861a8ef0 842 Gene3D G3DSA:2.40.30.10 744 840 1.5E-35 T 22-04-2016 PP4_RS23665 2840bc77e989fe78de68f4d3861a8ef0 842 Pfam PF08364 Bacterial translation initiation factor IF-2 associated region 61 95 7.2E-10 T 22-04-2016 IPR013575 Initiation factor 2 associated domain, bacterial PP4_RS23665 2840bc77e989fe78de68f4d3861a8ef0 842 PANTHER PTHR23115 695 840 7.7E-206 T 22-04-2016 PP4_RS23665 2840bc77e989fe78de68f4d3861a8ef0 842 PANTHER PTHR23115 327 670 7.7E-206 T 22-04-2016 PP4_RS23665 2840bc77e989fe78de68f4d3861a8ef0 842 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 267 317 3.6E-16 T 22-04-2016 IPR006847 Translation initiation factor IF-2, N-terminal PP4_RS23665 2840bc77e989fe78de68f4d3861a8ef0 842 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 1 51 5.7E-6 T 22-04-2016 IPR006847 Translation initiation factor IF-2, N-terminal PP4_RS23665 2840bc77e989fe78de68f4d3861a8ef0 842 Gene3D G3DSA:2.40.30.10 513 606 1.8E-26 T 22-04-2016 PP4_RS23665 2840bc77e989fe78de68f4d3861a8ef0 842 SUPERFAMILY SSF50447 515 597 4.2E-26 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain PP4_RS23665 2840bc77e989fe78de68f4d3861a8ef0 842 Gene3D G3DSA:3.30.56.50 2 51 1.0E-21 T 22-04-2016 PP4_RS23665 2840bc77e989fe78de68f4d3861a8ef0 842 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 840 17.114 T 22-04-2016 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 PP4_RS23665 2840bc77e989fe78de68f4d3861a8ef0 842 Pfam PF11987 Translation-initiation factor 2 627 732 9.0E-34 T 22-04-2016 IPR023115 Translation initiation factor IF- 2, domain 3 PP4_RS08020 15ca8cb8736c37cfaffb136f072c8833 294 ProSitePatterns PS00399 ATP-citrate lyase / succinyl-CoA ligases family active site. 236 249 - T 22-04-2016 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site PP4_RS08020 15ca8cb8736c37cfaffb136f072c8833 294 SUPERFAMILY SSF51735 1 122 5.35E-43 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS08020 15ca8cb8736c37cfaffb136f072c8833 294 SUPERFAMILY SSF52210 123 287 3.53E-57 T 22-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 PP4_RS08020 15ca8cb8736c37cfaffb136f072c8833 294 Gene3D G3DSA:3.40.50.261 120 287 5.0E-77 T 22-04-2016 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 PP4_RS08020 15ca8cb8736c37cfaffb136f072c8833 294 TIGRFAM TIGR01019 sucCoAalpha: succinate-CoA ligase, alpha subunit 4 287 4.4E-144 T 22-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 PP4_RS08020 15ca8cb8736c37cfaffb136f072c8833 294 SMART SM00881 4 100 2.8E-37 T 22-04-2016 IPR003781 CoA-binding GO:0048037 PP4_RS08020 15ca8cb8736c37cfaffb136f072c8833 294 PIRSF PIRSF001553 1 290 4.6E-133 T 22-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 PP4_RS08020 15ca8cb8736c37cfaffb136f072c8833 294 Gene3D G3DSA:3.40.50.720 2 119 5.9E-55 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS08020 15ca8cb8736c37cfaffb136f072c8833 294 Pfam PF02629 CoA binding domain 6 99 4.6E-32 T 22-04-2016 IPR003781 CoA-binding GO:0048037 PP4_RS08020 15ca8cb8736c37cfaffb136f072c8833 294 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 3.1E-38 T 22-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 PP4_RS08020 15ca8cb8736c37cfaffb136f072c8833 294 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 3.1E-38 T 22-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 PP4_RS08020 15ca8cb8736c37cfaffb136f072c8833 294 PRINTS PR01798 Succinyl-CoA synthase signature 240 257 3.1E-38 T 22-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 PP4_RS08020 15ca8cb8736c37cfaffb136f072c8833 294 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 3.1E-38 T 22-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 PP4_RS08020 15ca8cb8736c37cfaffb136f072c8833 294 PANTHER PTHR11117 1 287 5.5E-196 T 22-04-2016 PP4_RS08020 15ca8cb8736c37cfaffb136f072c8833 294 ProSitePatterns PS01216 ATP-citrate lyase / succinyl-CoA ligases family signature 1. 152 181 - T 22-04-2016 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824|GO:0008152 PP4_RS08020 15ca8cb8736c37cfaffb136f072c8833 294 Pfam PF00549 CoA-ligase 151 270 3.0E-21 T 22-04-2016 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824|GO:0008152 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|UniPathway: UPA00223 PP4_RS17535 1258624b5810d064921238b7e2e46274 324 PANTHER PTHR30126 1 309 2.7E-209 T 22-04-2016 PP4_RS17535 1258624b5810d064921238b7e2e46274 324 Gene3D G3DSA:1.10.10.10 1 82 8.9E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS17535 1258624b5810d064921238b7e2e46274 324 PANTHER PTHR30126:SF6 1 309 2.7E-209 T 22-04-2016 PP4_RS17535 1258624b5810d064921238b7e2e46274 324 Pfam PF03466 LysR substrate binding domain 89 264 4.6E-40 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS17535 1258624b5810d064921238b7e2e46274 324 Gene3D G3DSA:3.40.190.10 90 183 2.0E-22 T 22-04-2016 PP4_RS17535 1258624b5810d064921238b7e2e46274 324 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 64 6.9E-16 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS17535 1258624b5810d064921238b7e2e46274 324 Gene3D G3DSA:3.40.190.10 184 262 1.3E-28 T 22-04-2016 PP4_RS17535 1258624b5810d064921238b7e2e46274 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 7.2E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS17535 1258624b5810d064921238b7e2e46274 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 7.2E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS17535 1258624b5810d064921238b7e2e46274 324 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 7.2E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS17535 1258624b5810d064921238b7e2e46274 324 SUPERFAMILY SSF46785 1 113 3.52E-15 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS17535 1258624b5810d064921238b7e2e46274 324 SUPERFAMILY SSF53850 90 321 6.88E-42 T 22-04-2016 PP4_RS23860 35d9a4f441929bcd948d5966bbbddf0f 435 SUPERFAMILY SSF53092 53 200 1.64E-9 T 22-04-2016 IPR028980 Creatinase/Aminopeptidase P, N-terminal PP4_RS23860 35d9a4f441929bcd948d5966bbbddf0f 435 PANTHER PTHR10804:SF17 1 18 9.9E-16 T 22-04-2016 PP4_RS23860 35d9a4f441929bcd948d5966bbbddf0f 435 PANTHER PTHR10804:SF17 183 430 9.9E-16 T 22-04-2016 PP4_RS23860 35d9a4f441929bcd948d5966bbbddf0f 435 Gene3D G3DSA:3.40.350.10 55 200 1.1E-8 T 22-04-2016 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal PP4_RS23860 35d9a4f441929bcd948d5966bbbddf0f 435 Gene3D G3DSA:3.90.230.10 202 429 3.9E-29 T 22-04-2016 IPR000994 Peptidase M24, structural domain PP4_RS23860 35d9a4f441929bcd948d5966bbbddf0f 435 Pfam PF01321 Creatinase/Prolidase N-terminal domain 55 202 6.0E-9 T 22-04-2016 IPR000587 Creatinase, N-terminal GO:0016787 PP4_RS23860 35d9a4f441929bcd948d5966bbbddf0f 435 SUPERFAMILY SSF55920 201 429 5.63E-39 T 22-04-2016 IPR000994 Peptidase M24, structural domain PP4_RS23860 35d9a4f441929bcd948d5966bbbddf0f 435 PANTHER PTHR10804 1 18 9.9E-16 T 22-04-2016 PP4_RS23860 35d9a4f441929bcd948d5966bbbddf0f 435 PANTHER PTHR10804 183 430 9.9E-16 T 22-04-2016 PP4_RS23860 35d9a4f441929bcd948d5966bbbddf0f 435 Pfam PF00557 Metallopeptidase family M24 212 419 1.1E-22 T 22-04-2016 IPR000994 Peptidase M24, structural domain PP4_RS11340 fb27aacd1c363028e0d021876dd98e5c 250 PANTHER PTHR18966 19 244 9.5E-58 T 22-04-2016 PP4_RS11340 fb27aacd1c363028e0d021876dd98e5c 250 SUPERFAMILY SSF53850 1 248 3.41E-70 T 22-04-2016 PP4_RS11340 fb27aacd1c363028e0d021876dd98e5c 250 Gene3D G3DSA:3.40.190.10 21 109 4.3E-45 T 22-04-2016 PP4_RS11340 fb27aacd1c363028e0d021876dd98e5c 250 Gene3D G3DSA:3.40.190.10 206 249 4.3E-45 T 22-04-2016 PP4_RS11340 fb27aacd1c363028e0d021876dd98e5c 250 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 46 59 - T 22-04-2016 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 PP4_RS11340 fb27aacd1c363028e0d021876dd98e5c 250 SMART SM00062 23 247 5.3E-54 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS11340 fb27aacd1c363028e0d021876dd98e5c 250 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 24 244 1.9E-62 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS11340 fb27aacd1c363028e0d021876dd98e5c 250 PANTHER PTHR18966:SF152 19 244 9.5E-58 T 22-04-2016 PP4_RS11340 fb27aacd1c363028e0d021876dd98e5c 250 Gene3D G3DSA:3.40.190.10 112 202 2.1E-23 T 22-04-2016 PP4_RS04055 23b7cf1eee5270b920087241856ca92e 479 Gene3D G3DSA:3.40.50.1110 83 197 1.3E-4 T 22-04-2016 IPR013830 SGNH hydrolase-type esterase domain PP4_RS04055 23b7cf1eee5270b920087241856ca92e 479 Pfam PF16824 C-terminal carbohydrate-binding module 348 475 1.1E-59 T 22-04-2016 IPR031798 Alginate biosynthesis protein AlgX, C-terminal carbohydrate-binding module KEGG: 00061+2.3.1.-|KEGG: 00253+2.3.1.-|KEGG: 00261+2.3.1.-|KEGG: 00310+2.3.1.-|KEGG: 00330+2.3.1.-|KEGG: 00332+2.3.1.-|KEGG: 00340+2.3.1.-|KEGG: 00350+2.3.1.-|KEGG: 00564+2.3.1.-|KEGG: 00565+2.3.1.-|KEGG: 00604+2.3.1.-|KEGG: 00623+2.3.1.-|KEGG: 00626+2.3.1.-|KEGG: 00627+2.3.1.-|KEGG: 00642+2.3.1.-|KEGG: 00650+2.3.1.-|KEGG: 00680+2.3.1.-|KEGG: 00903+2.3.1.-|KEGG: 00904+2.3.1.-|KEGG: 00906+2.3.1.-|KEGG: 00940+2.3.1.-|KEGG: 00942+2.3.1.-|KEGG: 00950+2.3.1.-|KEGG: 00960+2.3.1.-|KEGG: 00965+2.3.1.-|UniPathway: UPA00286 PP4_RS04055 23b7cf1eee5270b920087241856ca92e 479 Pfam PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX 61 327 4.9E-88 T 22-04-2016 IPR031811 AlgX, SGNH hydrolase-like domain KEGG: 00061+2.3.1.-|KEGG: 00253+2.3.1.-|KEGG: 00261+2.3.1.-|KEGG: 00310+2.3.1.-|KEGG: 00330+2.3.1.-|KEGG: 00332+2.3.1.-|KEGG: 00340+2.3.1.-|KEGG: 00350+2.3.1.-|KEGG: 00564+2.3.1.-|KEGG: 00565+2.3.1.-|KEGG: 00604+2.3.1.-|KEGG: 00623+2.3.1.-|KEGG: 00626+2.3.1.-|KEGG: 00627+2.3.1.-|KEGG: 00642+2.3.1.-|KEGG: 00650+2.3.1.-|KEGG: 00680+2.3.1.-|KEGG: 00903+2.3.1.-|KEGG: 00904+2.3.1.-|KEGG: 00906+2.3.1.-|KEGG: 00940+2.3.1.-|KEGG: 00942+2.3.1.-|KEGG: 00950+2.3.1.-|KEGG: 00960+2.3.1.-|KEGG: 00965+2.3.1.-|UniPathway: UPA00286 PP4_RS07820 1fe2ce87729bfb19505bd9cd55634c96 178 PANTHER PTHR11908 2 158 1.9E-23 T 22-04-2016 PP4_RS07820 1fe2ce87729bfb19505bd9cd55634c96 178 PANTHER PTHR11908:SF66 2 158 1.9E-23 T 22-04-2016 PP4_RS07820 1fe2ce87729bfb19505bd9cd55634c96 178 SUPERFAMILY SSF54292 5 87 3.15E-17 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS07820 1fe2ce87729bfb19505bd9cd55634c96 178 SUPERFAMILY SSF47741 98 172 8.24E-20 T 22-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 PP4_RS07820 1fe2ce87729bfb19505bd9cd55634c96 178 Pfam PF01799 [2Fe-2S] binding domain 82 165 9.7E-20 T 22-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 PP4_RS07820 1fe2ce87729bfb19505bd9cd55634c96 178 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 18 66 1.8E-5 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS07820 1fe2ce87729bfb19505bd9cd55634c96 178 Gene3D G3DSA:3.10.20.30 3 83 1.3E-20 T 22-04-2016 IPR012675 Beta-grasp domain PP4_RS07820 1fe2ce87729bfb19505bd9cd55634c96 178 Gene3D G3DSA:1.10.150.120 84 171 1.4E-22 T 22-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 PP4_RS13830 b4b0875c8799f29d80e36b74deb5ea3e 84 PANTHER PTHR33280:SF3 1 81 7.5E-35 T 22-04-2016 PP4_RS13830 b4b0875c8799f29d80e36b74deb5ea3e 84 SUPERFAMILY SSF143800 1 81 4.71E-20 T 22-04-2016 PP4_RS13830 b4b0875c8799f29d80e36b74deb5ea3e 84 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 80 7.2E-15 T 22-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS13830 b4b0875c8799f29d80e36b74deb5ea3e 84 Pfam PF01197 Ribosomal protein L31 1 79 1.8E-22 T 22-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS13830 b4b0875c8799f29d80e36b74deb5ea3e 84 PANTHER PTHR33280 1 81 7.5E-35 T 22-04-2016 PP4_RS13830 b4b0875c8799f29d80e36b74deb5ea3e 84 Hamap MF_00502 50S ribosomal protein L31 type B [rpmE2]. 1 81 25.384 T 22-04-2016 IPR027493 Ribosomal protein L31 type B GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS13830 b4b0875c8799f29d80e36b74deb5ea3e 84 PRINTS PR01249 Ribosomal protein L31 signature 2 19 7.3E-14 T 22-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS13830 b4b0875c8799f29d80e36b74deb5ea3e 84 PRINTS PR01249 Ribosomal protein L31 signature 60 78 7.3E-14 T 22-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS13830 b4b0875c8799f29d80e36b74deb5ea3e 84 PRINTS PR01249 Ribosomal protein L31 signature 45 60 7.3E-14 T 22-04-2016 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS00355 ac80774bd1460944cdab920a503455d6 184 Gene3D G3DSA:3.40.50.720 10 152 4.1E-12 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS00355 ac80774bd1460944cdab920a503455d6 184 Pfam PF13460 NAD(P)H-binding 20 151 1.2E-10 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS00355 ac80774bd1460944cdab920a503455d6 184 SUPERFAMILY SSF51735 10 181 7.76E-14 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS20155 7c4827f91c01c5023c638e245127c54e 228 Pfam PF02224 Cytidylate kinase 8 222 1.0E-74 T 22-04-2016 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 PP4_RS20155 7c4827f91c01c5023c638e245127c54e 228 Hamap MF_00238 Cytidylate kinase [cmk]. 6 226 33.654 T 22-04-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 PP4_RS20155 7c4827f91c01c5023c638e245127c54e 228 Gene3D G3DSA:3.40.50.300 6 221 1.2E-72 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS20155 7c4827f91c01c5023c638e245127c54e 228 PANTHER PTHR21299 6 228 1.5E-72 T 22-04-2016 PP4_RS20155 7c4827f91c01c5023c638e245127c54e 228 TIGRFAM TIGR00017 cmk: cytidylate kinase 6 218 5.7E-80 T 22-04-2016 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 MetaCyc: PWY-7205 PP4_RS20155 7c4827f91c01c5023c638e245127c54e 228 SUPERFAMILY SSF52540 6 223 3.32E-45 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS18295 2599c976bc183f21315c48dfcc7e861e 364 SUPERFAMILY SSF51679 5 353 4.32E-94 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS18295 2599c976bc183f21315c48dfcc7e861e 364 Pfam PF00296 Luciferase-like monooxygenase 7 326 8.1E-76 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS18295 2599c976bc183f21315c48dfcc7e861e 364 PANTHER PTHR30011:SF21 1 353 4.9E-189 T 22-04-2016 PP4_RS18295 2599c976bc183f21315c48dfcc7e861e 364 Gene3D G3DSA:3.20.20.30 3 354 2.1E-103 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS18295 2599c976bc183f21315c48dfcc7e861e 364 PANTHER PTHR30011 1 353 4.9E-189 T 22-04-2016 PP4_RS18295 2599c976bc183f21315c48dfcc7e861e 364 TIGRFAM TIGR04021 LLM_DMSO2_sfnG: dimethyl sulfone monooxygenase SfnG 6 355 2.2E-190 T 22-04-2016 IPR024014 Dimethyl sulphone monooxygenase SfnG PP4_RS21090 bd1d696b885cacb5bec2e9a2ea4d2bbe 136 Pfam PF02657 Fe-S metabolism associated domain 12 131 2.9E-39 T 22-04-2016 IPR003808 Fe-S metabolism associated domain, SufE-like UniPathway: UPA00266 PP4_RS21090 bd1d696b885cacb5bec2e9a2ea4d2bbe 136 PANTHER PTHR12735 1 135 1.8E-46 T 22-04-2016 PP4_RS21090 bd1d696b885cacb5bec2e9a2ea4d2bbe 136 Gene3D G3DSA:3.90.1010.10 1 134 1.7E-46 T 22-04-2016 PP4_RS21090 bd1d696b885cacb5bec2e9a2ea4d2bbe 136 SUPERFAMILY SSF82649 2 133 5.02E-43 T 22-04-2016 PP4_RS21090 bd1d696b885cacb5bec2e9a2ea4d2bbe 136 PANTHER PTHR12735:SF26 1 135 1.8E-46 T 22-04-2016 PP4_RS02155 df2d54706425730900f0902af71bb363 118 TIGRFAM TIGR00526 folB_dom: FolB domain 2 115 3.9E-30 T 22-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 PP4_RS02155 df2d54706425730900f0902af71bb363 118 Pfam PF02152 Dihydroneopterin aldolase 4 114 2.6E-30 T 22-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 PP4_RS02155 df2d54706425730900f0902af71bb363 118 PANTHER PTHR20941 2 116 3.0E-27 T 22-04-2016 PP4_RS02155 df2d54706425730900f0902af71bb363 118 SUPERFAMILY SSF55620 2 115 2.5E-32 T 22-04-2016 PP4_RS02155 df2d54706425730900f0902af71bb363 118 SMART SM00905 4 115 1.9E-47 T 22-04-2016 IPR006157 Dihydroneopterin aldolase/epimerase domain GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 PP4_RS02155 df2d54706425730900f0902af71bb363 118 TIGRFAM TIGR00525 folB: dihydroneopterin aldolase 2 115 8.7E-24 T 22-04-2016 IPR006156 Dihydroneopterin aldolase GO:0004150|GO:0006760 KEGG: 00790+4.1.2.25|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 PP4_RS02155 df2d54706425730900f0902af71bb363 118 Gene3D G3DSA:3.30.1130.10 2 115 2.5E-36 T 22-04-2016 PP4_RS04885 7d590f30c86eebadcb1e05f88dd67615 230 SUPERFAMILY SSF55120 61 227 1.97E-42 T 22-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS04885 7d590f30c86eebadcb1e05f88dd67615 230 SMART SM00363 1 58 1.4E-4 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 PP4_RS04885 7d590f30c86eebadcb1e05f88dd67615 230 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 99 113 - T 22-04-2016 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 PP4_RS04885 7d590f30c86eebadcb1e05f88dd67615 230 Pfam PF01479 S4 domain 1 43 1.2E-5 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 PP4_RS04885 7d590f30c86eebadcb1e05f88dd67615 230 Pfam PF00849 RNA pseudouridylate synthase 62 190 3.3E-13 T 22-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS04885 7d590f30c86eebadcb1e05f88dd67615 230 PANTHER PTHR21600:SF19 1 230 1.7E-65 T 22-04-2016 PP4_RS04885 7d590f30c86eebadcb1e05f88dd67615 230 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 66 223 9.6E-42 T 22-04-2016 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 PP4_RS04885 7d590f30c86eebadcb1e05f88dd67615 230 SUPERFAMILY SSF55174 1 90 1.85E-10 T 22-04-2016 PP4_RS04885 7d590f30c86eebadcb1e05f88dd67615 230 PANTHER PTHR21600 1 230 1.7E-65 T 22-04-2016 PP4_RS04885 7d590f30c86eebadcb1e05f88dd67615 230 Gene3D G3DSA:3.10.290.10 1 63 2.0E-12 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 PP4_RS11010 cc8985e7e54ea97a8a3df7e1b9289b8f 470 PIRSF PIRSF002744 2 465 8.6E-108 T 22-04-2016 IPR026030 Purine-cytosine permease Fcy2/21/22 GO:0005215|GO:0016021|GO:0055085 PP4_RS11010 cc8985e7e54ea97a8a3df7e1b9289b8f 470 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 18 439 8.7E-51 T 22-04-2016 IPR001248 Purine-cytosine permease GO:0005215|GO:0016020|GO:0055085 PP4_RS11010 cc8985e7e54ea97a8a3df7e1b9289b8f 470 PANTHER PTHR31806 7 463 3.8E-105 T 22-04-2016 PP4_RS09465 a33c492dabe74b51cb98d9db1f42e0cc 187 SUPERFAMILY SSF52833 1 186 2.38E-60 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS09465 a33c492dabe74b51cb98d9db1f42e0cc 187 Gene3D G3DSA:3.40.30.10 4 183 7.8E-67 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS09465 a33c492dabe74b51cb98d9db1f42e0cc 187 PANTHER PTHR10681:SF121 1 187 3.1E-94 T 22-04-2016 PP4_RS09465 a33c492dabe74b51cb98d9db1f42e0cc 187 TIGRFAM TIGR03137 AhpC: peroxiredoxin 1 187 1.2E-105 T 22-04-2016 IPR017559 Alkyl hydroperoxide reductase subunit C GO:0006979|GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 PP4_RS09465 a33c492dabe74b51cb98d9db1f42e0cc 187 Pfam PF00578 AhpC/TSA family 5 132 7.3E-36 T 22-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 PP4_RS09465 a33c492dabe74b51cb98d9db1f42e0cc 187 PIRSF PIRSF000239 1 187 1.3E-55 T 22-04-2016 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15 PP4_RS09465 a33c492dabe74b51cb98d9db1f42e0cc 187 PANTHER PTHR10681 1 187 3.1E-94 T 22-04-2016 PP4_RS09465 a33c492dabe74b51cb98d9db1f42e0cc 187 Pfam PF10417 C-terminal domain of 1-Cys peroxiredoxin 156 181 2.0E-6 T 22-04-2016 IPR019479 Peroxiredoxin, C-terminal GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 PP4_RS25880 7e7f19d37adad5e374d06d0c1ed84a9e 257 Pfam PF13614 AAA domain 5 182 8.0E-37 T 22-04-2016 IPR025669 AAA domain PP4_RS25880 7e7f19d37adad5e374d06d0c1ed84a9e 257 SUPERFAMILY SSF52540 1 255 2.24E-48 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25880 7e7f19d37adad5e374d06d0c1ed84a9e 257 PANTHER PTHR13696:SF66 4 256 1.2E-113 T 22-04-2016 PP4_RS25880 7e7f19d37adad5e374d06d0c1ed84a9e 257 Gene3D G3DSA:3.40.50.300 4 253 1.5E-51 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25880 7e7f19d37adad5e374d06d0c1ed84a9e 257 PANTHER PTHR13696 4 256 1.2E-113 T 22-04-2016 PP4_RS16410 5eee4579e85b5e5c4ab1264844b1487e 362 SUPERFAMILY SSF56796 4 351 1.06E-87 T 22-04-2016 PP4_RS16410 5eee4579e85b5e5c4ab1264844b1487e 362 Gene3D G3DSA:3.40.50.1970 4 183 6.9E-41 T 22-04-2016 PP4_RS16410 5eee4579e85b5e5c4ab1264844b1487e 362 TIGRFAM TIGR03405 Phn_Fe-ADH: phosphonate metabolism-associated iron-containing alcohol dehydrogenase 5 359 3.0E-162 T 22-04-2016 IPR017775 Alcohol dehydrogenase, iron-type, phosphonate metabolism-associated PP4_RS16410 5eee4579e85b5e5c4ab1264844b1487e 362 Gene3D G3DSA:1.20.1090.10 184 351 3.0E-46 T 22-04-2016 PP4_RS16410 5eee4579e85b5e5c4ab1264844b1487e 362 Pfam PF00465 Iron-containing alcohol dehydrogenase 8 350 1.1E-84 T 22-04-2016 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 PP4_RS16410 5eee4579e85b5e5c4ab1264844b1487e 362 ProSitePatterns PS00913 Iron-containing alcohol dehydrogenases signature 1. 172 200 - T 22-04-2016 IPR018211 Alcohol dehydrogenase, iron-type, conserved site GO:0016491|GO:0046872|GO:0055114 PP4_RS16410 5eee4579e85b5e5c4ab1264844b1487e 362 PANTHER PTHR11496 1 352 2.1E-76 T 22-04-2016 PP4_RS03765 cfd6943a86b2ec4a2f44fe51eea84173 228 PANTHER PTHR30249 6 228 2.4E-97 T 22-04-2016 PP4_RS03765 cfd6943a86b2ec4a2f44fe51eea84173 228 PANTHER PTHR30249:SF4 6 228 2.4E-97 T 22-04-2016 PP4_RS03765 cfd6943a86b2ec4a2f44fe51eea84173 228 Pfam PF04172 LrgB-like family 14 225 6.6E-69 T 22-04-2016 IPR007300 CidB/LrgB family PP4_RS27070 9cf430280eea902d1c3f86def99deef3 101 SUPERFAMILY SSF47729 1 89 5.59E-29 T 22-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 PP4_RS27070 9cf430280eea902d1c3f86def99deef3 101 SMART SM00411 1 89 9.5E-35 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PP4_RS27070 9cf430280eea902d1c3f86def99deef3 101 Gene3D G3DSA:4.10.520.10 1 89 7.9E-33 T 22-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 PP4_RS27070 9cf430280eea902d1c3f86def99deef3 101 Pfam PF00216 Bacterial DNA-binding protein 1 89 2.5E-30 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PP4_RS27070 9cf430280eea902d1c3f86def99deef3 101 PANTHER PTHR33175 1 98 5.4E-37 T 22-04-2016 PP4_RS27070 9cf430280eea902d1c3f86def99deef3 101 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 45 64 - T 22-04-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 PP4_RS27070 9cf430280eea902d1c3f86def99deef3 101 PRINTS PR01727 Prokaryotic integration host factor signature 39 54 3.8E-17 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PP4_RS27070 9cf430280eea902d1c3f86def99deef3 101 PRINTS PR01727 Prokaryotic integration host factor signature 57 70 3.8E-17 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PP4_RS27070 9cf430280eea902d1c3f86def99deef3 101 PRINTS PR01727 Prokaryotic integration host factor signature 73 87 3.8E-17 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PP4_RS10265 5d8488f14168f519318d590215ddd6fd 273 Gene3D G3DSA:3.40.50.720 111 267 6.0E-38 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS10265 5d8488f14168f519318d590215ddd6fd 273 PANTHER PTHR21089 1 271 3.7E-142 T 22-04-2016 PP4_RS10265 5d8488f14168f519318d590215ddd6fd 273 SUPERFAMILY SSF53223 9 105 1.27E-27 T 22-04-2016 PP4_RS10265 5d8488f14168f519318d590215ddd6fd 273 Gene3D G3DSA:3.40.192.10 25 110 9.7E-29 T 22-04-2016 PP4_RS10265 5d8488f14168f519318d590215ddd6fd 273 PANTHER PTHR21089:SF9 1 271 3.7E-142 T 22-04-2016 PP4_RS10265 5d8488f14168f519318d590215ddd6fd 273 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 26 93 7.8E-17 T 22-04-2016 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 PP4_RS10265 5d8488f14168f519318d590215ddd6fd 273 SUPERFAMILY SSF51735 106 266 7.16E-30 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS18775 3a517cff9c1c985db5a68b9c0147d7ea 587 SMART SM00382 373 545 4.9E-18 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS18775 3a517cff9c1c985db5a68b9c0147d7ea 587 TIGRFAM TIGR02204 MsbA_rel: ABC transporter, permease/ATP-binding protein 8 584 6.1E-267 T 22-04-2016 IPR011918 ABC transporter, ATP-binding/permease protein PP4_RS18775 3a517cff9c1c985db5a68b9c0147d7ea 587 Gene3D G3DSA:3.40.50.300 345 575 1.2E-81 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS18775 3a517cff9c1c985db5a68b9c0147d7ea 587 SUPERFAMILY SSF90123 16 323 8.37E-72 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PP4_RS18775 3a517cff9c1c985db5a68b9c0147d7ea 587 Pfam PF00664 ABC transporter transmembrane region 28 295 2.3E-50 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PP4_RS18775 3a517cff9c1c985db5a68b9c0147d7ea 587 Gene3D G3DSA:1.20.1560.10 17 323 1.2E-74 T 22-04-2016 PP4_RS18775 3a517cff9c1c985db5a68b9c0147d7ea 587 ProSitePatterns PS00211 ABC transporters family signature. 485 499 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS18775 3a517cff9c1c985db5a68b9c0147d7ea 587 Pfam PF00005 ABC transporter 365 513 1.0E-32 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS18775 3a517cff9c1c985db5a68b9c0147d7ea 587 PANTHER PTHR24221 3 584 4.2E-227 T 22-04-2016 PP4_RS18775 3a517cff9c1c985db5a68b9c0147d7ea 587 SUPERFAMILY SSF52540 338 584 5.33E-88 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25700 4419dff44e3ab9fa0df73eef33332019 510 SUPERFAMILY SSF48557 4 506 9.42E-191 T 22-04-2016 IPR008948 L-Aspartase-like GO:0003824 PP4_RS25700 4419dff44e3ab9fa0df73eef33332019 510 PANTHER PTHR10362 6 494 3.3E-249 T 22-04-2016 PP4_RS25700 4419dff44e3ab9fa0df73eef33332019 510 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 139 155 - T 22-04-2016 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 PP4_RS25700 4419dff44e3ab9fa0df73eef33332019 510 Gene3D G3DSA:1.20.200.10 198 501 6.8E-127 T 22-04-2016 PP4_RS25700 4419dff44e3ab9fa0df73eef33332019 510 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 5 509 1.5E-231 T 22-04-2016 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 PP4_RS25700 4419dff44e3ab9fa0df73eef33332019 510 Hamap MF_00229 Histidine ammonia-lyase [hutH]. 3 504 45.453 T 22-04-2016 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 PP4_RS25700 4419dff44e3ab9fa0df73eef33332019 510 Gene3D G3DSA:1.10.275.10 3 197 6.5E-74 T 22-04-2016 IPR024083 Fumarase/histidase, N-terminal PP4_RS25700 4419dff44e3ab9fa0df73eef33332019 510 Pfam PF00221 Aromatic amino acid lyase 11 471 1.9E-183 T 22-04-2016 IPR001106 Aromatic amino acid lyase PP4_RS26815 29fa418f48687ca6721ec8575561b152 496 Gene3D G3DSA:3.40.605.10 19 266 2.0E-73 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS26815 29fa418f48687ca6721ec8575561b152 496 PANTHER PTHR11699 24 496 2.6E-274 T 22-04-2016 PP4_RS26815 29fa418f48687ca6721ec8575561b152 496 PANTHER PTHR11699:SF144 24 496 2.6E-274 T 22-04-2016 PP4_RS26815 29fa418f48687ca6721ec8575561b152 496 Gene3D G3DSA:3.40.309.10 267 455 2.3E-51 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PP4_RS26815 29fa418f48687ca6721ec8575561b152 496 SUPERFAMILY SSF53720 17 484 4.19E-133 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS26815 29fa418f48687ca6721ec8575561b152 496 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 251 258 - T 22-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 PP4_RS26815 29fa418f48687ca6721ec8575561b152 496 Pfam PF00171 Aldehyde dehydrogenase family 19 478 1.8E-131 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PP4_RS23515 b33e18c8d7e048e817caeaeab532e246 520 Gene3D G3DSA:3.40.50.300 338 475 2.9E-17 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23515 b33e18c8d7e048e817caeaeab532e246 520 SUPERFAMILY SSF52540 340 517 1.95E-17 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23515 b33e18c8d7e048e817caeaeab532e246 520 Gene3D G3DSA:3.90.1200.10 114 294 3.4E-8 T 22-04-2016 PP4_RS23515 b33e18c8d7e048e817caeaeab532e246 520 SUPERFAMILY SSF56112 8 294 4.96E-23 T 22-04-2016 IPR011009 Protein kinase-like domain PP4_RS23515 b33e18c8d7e048e817caeaeab532e246 520 Pfam PF01636 Phosphotransferase enzyme family 117 278 2.4E-7 T 22-04-2016 IPR002575 Aminoglycoside phosphotransferase PP4_RS23515 b33e18c8d7e048e817caeaeab532e246 520 PANTHER PTHR12083:SF8 8 371 6.5E-168 T 22-04-2016 PP4_RS23515 b33e18c8d7e048e817caeaeab532e246 520 PANTHER PTHR12083:SF8 399 513 6.5E-168 T 22-04-2016 PP4_RS23515 b33e18c8d7e048e817caeaeab532e246 520 PANTHER PTHR12083 399 513 6.5E-168 T 22-04-2016 PP4_RS23515 b33e18c8d7e048e817caeaeab532e246 520 PANTHER PTHR12083 8 371 6.5E-168 T 22-04-2016 PP4_RS23515 b33e18c8d7e048e817caeaeab532e246 520 Pfam PF13671 AAA domain 338 486 4.1E-37 T 22-04-2016 PP4_RS12685 1cdae7cfd65cc8826cc3ff90881b00a5 488 SUPERFAMILY SSF51905 11 256 4.33E-45 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS12685 1cdae7cfd65cc8826cc3ff90881b00a5 488 SUPERFAMILY SSF51905 420 479 4.33E-45 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS12685 1cdae7cfd65cc8826cc3ff90881b00a5 488 Gene3D G3DSA:3.50.50.60 10 269 1.3E-43 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS12685 1cdae7cfd65cc8826cc3ff90881b00a5 488 Gene3D G3DSA:3.50.50.60 414 478 1.3E-43 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS12685 1cdae7cfd65cc8826cc3ff90881b00a5 488 PANTHER PTHR11552 12 487 1.7E-14 T 22-04-2016 PP4_RS12685 1cdae7cfd65cc8826cc3ff90881b00a5 488 Pfam PF05199 GMC oxidoreductase 348 471 1.1E-18 T 22-04-2016 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 PP4_RS12685 1cdae7cfd65cc8826cc3ff90881b00a5 488 PANTHER PTHR11552:SF139 12 487 1.7E-14 T 22-04-2016 PP4_RS14820 21207ab18f173ba418b3ed8d7d79c4c9 330 PANTHER PTHR18640 5 326 9.0E-104 T 22-04-2016 IPR016833 Putative sodium bile acid cotransporter PP4_RS14820 21207ab18f173ba418b3ed8d7d79c4c9 330 PANTHER PTHR18640:SF9 5 326 9.0E-104 T 22-04-2016 PP4_RS14820 21207ab18f173ba418b3ed8d7d79c4c9 330 PIRSF PIRSF026166 1 330 8.2E-133 T 22-04-2016 IPR016833 Putative sodium bile acid cotransporter PP4_RS14820 21207ab18f173ba418b3ed8d7d79c4c9 330 Pfam PF13593 SBF-like CPA transporter family (DUF4137) 9 317 3.0E-96 T 22-04-2016 IPR016833 Putative sodium bile acid cotransporter PP4_RS24550 05274fc6f832f9d5ff54e5b5daf1c314 386 PANTHER PTHR21581 14 381 3.0E-127 T 22-04-2016 PP4_RS24550 05274fc6f832f9d5ff54e5b5daf1c314 386 Pfam PF00768 D-alanyl-D-alanine carboxypeptidase 28 255 2.6E-86 T 22-04-2016 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal GO:0006508|GO:0009002 PP4_RS24550 05274fc6f832f9d5ff54e5b5daf1c314 386 SUPERFAMILY SSF69189 276 368 3.14E-25 T 22-04-2016 IPR015956 Penicillin-binding protein-associated GO:0004180|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 PP4_RS24550 05274fc6f832f9d5ff54e5b5daf1c314 386 Pfam PF07943 Penicillin-binding protein 5, C-terminal domain 276 366 2.1E-23 T 22-04-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 PP4_RS24550 05274fc6f832f9d5ff54e5b5daf1c314 386 Gene3D G3DSA:3.40.710.10 28 275 1.8E-104 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS24550 05274fc6f832f9d5ff54e5b5daf1c314 386 Gene3D G3DSA:2.60.410.10 276 366 1.5E-28 T 22-04-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 PP4_RS24550 05274fc6f832f9d5ff54e5b5daf1c314 386 SMART SM00936 276 366 4.2E-33 T 22-04-2016 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal GO:0006508|GO:0009002 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471|UniPathway: UPA00219 PP4_RS24550 05274fc6f832f9d5ff54e5b5daf1c314 386 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 116 133 1.5E-17 T 22-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 PP4_RS24550 05274fc6f832f9d5ff54e5b5daf1c314 386 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 143 156 1.5E-17 T 22-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 PP4_RS24550 05274fc6f832f9d5ff54e5b5daf1c314 386 PRINTS PR00725 D-Ala-D-Ala carboxypeptidase 1 (S11) family signature 63 74 1.5E-17 T 22-04-2016 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A GO:0006508|GO:0009002 PP4_RS24550 05274fc6f832f9d5ff54e5b5daf1c314 386 SUPERFAMILY SSF56601 8 276 6.79E-90 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS24550 05274fc6f832f9d5ff54e5b5daf1c314 386 PANTHER PTHR21581:SF4 14 381 3.0E-127 T 22-04-2016 PP4_RS06035 525f45b0e7010d673bb0b080d7676962 116 PANTHER PTHR40275 16 112 2.6E-17 T 22-04-2016 PP4_RS06035 525f45b0e7010d673bb0b080d7676962 116 Gene3D G3DSA:1.10.260.40 64 105 5.9E-6 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS06035 525f45b0e7010d673bb0b080d7676962 116 PANTHER PTHR40275:SF1 16 112 2.6E-17 T 22-04-2016 PP4_RS06035 525f45b0e7010d673bb0b080d7676962 116 TIGRFAM TIGR02684 dnstrm_HI1420: probable addiction module antidote protein 20 106 2.3E-28 T 22-04-2016 IPR014057 Addiction module antidote protein, HI1420 PP4_RS06035 525f45b0e7010d673bb0b080d7676962 116 SUPERFAMILY SSF47413 42 104 4.73E-7 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS07180 70997378b14e3d7a964771db2589a575 451 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 214 229 - T 22-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PP4_RS07180 70997378b14e3d7a964771db2589a575 451 SUPERFAMILY SSF52540 131 369 4.51E-71 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS07180 70997378b14e3d7a964771db2589a575 451 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 152 165 - T 22-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 PP4_RS07180 70997378b14e3d7a964771db2589a575 451 Gene3D G3DSA:1.10.8.60 301 369 1.7E-23 T 22-04-2016 PP4_RS07180 70997378b14e3d7a964771db2589a575 451 SUPERFAMILY SSF46689 341 437 9.86E-11 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS07180 70997378b14e3d7a964771db2589a575 451 Gene3D G3DSA:3.40.50.300 137 300 4.4E-57 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS07180 70997378b14e3d7a964771db2589a575 451 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 341 350 - T 22-04-2016 IPR025944 Sigma-54 interaction domain, conserved site PP4_RS07180 70997378b14e3d7a964771db2589a575 451 Pfam PF00158 Sigma-54 interaction domain 132 294 2.0E-68 T 22-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 PP4_RS07180 70997378b14e3d7a964771db2589a575 451 PANTHER PTHR32071:SF21 1 449 2.9E-238 T 22-04-2016 IPR029995 Transcriptional regulatory protein FlbD GO:0003700|GO:0006355 PP4_RS07180 70997378b14e3d7a964771db2589a575 451 PANTHER PTHR32071 1 449 2.9E-238 T 22-04-2016 PP4_RS07180 70997378b14e3d7a964771db2589a575 451 SUPERFAMILY SSF52172 3 172 1.42E-42 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS07180 70997378b14e3d7a964771db2589a575 451 Pfam PF02954 Bacterial regulatory protein, Fis family 402 437 1.5E-12 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS07180 70997378b14e3d7a964771db2589a575 451 Gene3D G3DSA:3.40.50.2300 2 136 3.3E-38 T 22-04-2016 PP4_RS07180 70997378b14e3d7a964771db2589a575 451 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 421 441 2.6E-6 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS07180 70997378b14e3d7a964771db2589a575 451 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 404 421 2.6E-6 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS07180 70997378b14e3d7a964771db2589a575 451 Pfam PF00072 Response regulator receiver domain 5 114 1.7E-28 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS07180 70997378b14e3d7a964771db2589a575 451 SMART SM00382 148 291 1.1E-13 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS07180 70997378b14e3d7a964771db2589a575 451 SMART SM00448 3 114 1.1E-35 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS07180 70997378b14e3d7a964771db2589a575 451 Gene3D G3DSA:1.10.10.60 394 436 1.6E-12 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS22905 0f1aef7f77da3037d6619f145895b733 286 Hamap MF_00061 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 4 270 32.852 T 22-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 PP4_RS22905 0f1aef7f77da3037d6619f145895b733 286 PIRSF PIRSF010376 2 278 9.0E-85 T 22-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 PP4_RS22905 0f1aef7f77da3037d6619f145895b733 286 Gene3D G3DSA:3.30.230.10 5 158 1.5E-51 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PP4_RS22905 0f1aef7f77da3037d6619f145895b733 286 PANTHER PTHR20861:SF2 1 276 3.0E-93 T 22-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 PP4_RS22905 0f1aef7f77da3037d6619f145895b733 286 PANTHER PTHR20861 1 276 3.0E-93 T 22-04-2016 PP4_RS22905 0f1aef7f77da3037d6619f145895b733 286 Pfam PF00288 GHMP kinases N terminal domain 86 143 1.4E-9 T 22-04-2016 IPR006204 GHMP kinase N-terminal domain GO:0005524 PP4_RS22905 0f1aef7f77da3037d6619f145895b733 286 TIGRFAM TIGR00154 ispE: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 3 278 5.0E-84 T 22-04-2016 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00710+2.7.1.14|KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560|UniPathway: UPA00056 PP4_RS22905 0f1aef7f77da3037d6619f145895b733 286 Pfam PF08544 GHMP kinases C terminal 201 253 1.7E-7 T 22-04-2016 IPR013750 GHMP kinase, C-terminal domain PP4_RS22905 0f1aef7f77da3037d6619f145895b733 286 Gene3D G3DSA:3.30.70.890 162 277 2.1E-37 T 22-04-2016 IPR013750 GHMP kinase, C-terminal domain PP4_RS22905 0f1aef7f77da3037d6619f145895b733 286 SUPERFAMILY SSF55060 160 277 6.23E-33 T 22-04-2016 IPR013750 GHMP kinase, C-terminal domain PP4_RS22905 0f1aef7f77da3037d6619f145895b733 286 SUPERFAMILY SSF54211 3 157 1.14E-45 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PP4_RS10330 827746b6377758e2c76226a1ab20021b 282 PANTHER PTHR23309 1 282 2.7E-137 T 22-04-2016 PP4_RS10330 827746b6377758e2c76226a1ab20021b 282 SUPERFAMILY SSF48179 185 282 1.02E-32 T 22-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PP4_RS10330 827746b6377758e2c76226a1ab20021b 282 Gene3D G3DSA:3.40.50.720 2 187 5.4E-61 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS10330 827746b6377758e2c76226a1ab20021b 282 PIRSF PIRSF000105 1 282 3.1E-86 T 22-04-2016 IPR022694 3-hydroxyacyl-CoA dehydrogenase GO:0003857|GO:0006631|GO:0055114|GO:0070403 PP4_RS10330 827746b6377758e2c76226a1ab20021b 282 Pfam PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 5 182 1.2E-64 T 22-04-2016 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 PP4_RS10330 827746b6377758e2c76226a1ab20021b 282 Pfam PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain 186 282 4.2E-33 T 22-04-2016 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal GO:0003857|GO:0006631|GO:0016491|GO:0055114 KEGG: 00062+4.2.1.17+1.1.1.35|KEGG: 00071+4.2.1.17+1.1.1.35|KEGG: 00120+1.1.1.35|KEGG: 00280+4.2.1.17+1.1.1.35|KEGG: 00281+4.2.1.17+1.1.1.35|KEGG: 00310+4.2.1.17+1.1.1.35|KEGG: 00360+4.2.1.17|KEGG: 00362+4.2.1.17+1.1.1.35|KEGG: 00380+4.2.1.17+1.1.1.35|KEGG: 00410+4.2.1.17|KEGG: 00592+4.2.1.17|KEGG: 00623+1.1.1.35|KEGG: 00627+4.2.1.17|KEGG: 00640+4.2.1.17|KEGG: 00650+4.2.1.17+1.1.1.35|KEGG: 00720+4.2.1.17+1.1.1.35|KEGG: 00903+4.2.1.17|KEGG: 00930+4.2.1.17+1.1.1.35|MetaCyc: PWY-1361|MetaCyc: PWY-5109|MetaCyc: PWY-5136|MetaCyc: PWY-5138|MetaCyc: PWY-5177|MetaCyc: PWY-5789|MetaCyc: PWY-6435|MetaCyc: PWY-6583|MetaCyc: PWY-6863|MetaCyc: PWY-6883|MetaCyc: PWY-6944|MetaCyc: PWY-6945|MetaCyc: PWY-6946|MetaCyc: PWY-7007|MetaCyc: PWY-7046|MetaCyc: PWY-7094|MetaCyc: PWY-7216|MetaCyc: PWY-735|MetaCyc: PWY-7401|MetaCyc: PWY-7606|MetaCyc: PWY-7726|UniPathway: UPA00659 PP4_RS10330 827746b6377758e2c76226a1ab20021b 282 SUPERFAMILY SSF51735 1 184 1.6E-55 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS10330 827746b6377758e2c76226a1ab20021b 282 Gene3D G3DSA:1.10.1040.10 188 282 1.7E-34 T 22-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PP4_RS23865 223c8ea7995228dcab645c1aa1fc8d99 678 Gene3D G3DSA:3.50.50.60 480 615 8.0E-20 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS23865 223c8ea7995228dcab645c1aa1fc8d99 678 PANTHER PTHR22893 1 428 1.6E-101 T 22-04-2016 PP4_RS23865 223c8ea7995228dcab645c1aa1fc8d99 678 PANTHER PTHR22893:SF25 1 428 1.6E-101 T 22-04-2016 PP4_RS23865 223c8ea7995228dcab645c1aa1fc8d99 678 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 600 616 5.7E-8 T 22-04-2016 PP4_RS23865 223c8ea7995228dcab645c1aa1fc8d99 678 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 470 488 5.7E-8 T 22-04-2016 PP4_RS23865 223c8ea7995228dcab645c1aa1fc8d99 678 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 388 407 5.7E-8 T 22-04-2016 PP4_RS23865 223c8ea7995228dcab645c1aa1fc8d99 678 SUPERFAMILY SSF51395 1 371 1.99E-89 T 22-04-2016 PP4_RS23865 223c8ea7995228dcab645c1aa1fc8d99 678 Gene3D G3DSA:3.20.20.70 1 378 1.2E-94 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS23865 223c8ea7995228dcab645c1aa1fc8d99 678 SUPERFAMILY SSF51905 363 676 5.31E-33 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS23865 223c8ea7995228dcab645c1aa1fc8d99 678 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 652 659 1.2E-7 T 22-04-2016 PP4_RS23865 223c8ea7995228dcab645c1aa1fc8d99 678 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 601 615 1.2E-7 T 22-04-2016 PP4_RS23865 223c8ea7995228dcab645c1aa1fc8d99 678 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 387 409 1.2E-7 T 22-04-2016 PP4_RS23865 223c8ea7995228dcab645c1aa1fc8d99 678 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 387 616 1.3E-9 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS23865 223c8ea7995228dcab645c1aa1fc8d99 678 Gene3D G3DSA:3.50.50.60 616 677 1.3E-23 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS23865 223c8ea7995228dcab645c1aa1fc8d99 678 Gene3D G3DSA:3.50.50.60 385 479 1.3E-23 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS23865 223c8ea7995228dcab645c1aa1fc8d99 678 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 6 340 9.1E-47 T 22-04-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 PP4_RS03235 28caa6acb3018a3a8b203f30ad42d94c 151 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 4 143 1.1E-61 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PP4_RS03235 28caa6acb3018a3a8b203f30ad42d94c 151 Pfam PF01220 Dehydroquinase class II 4 140 4.1E-59 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PP4_RS03235 28caa6acb3018a3a8b203f30ad42d94c 151 SUPERFAMILY SSF52304 3 144 1.23E-62 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PP4_RS03235 28caa6acb3018a3a8b203f30ad42d94c 151 ProSitePatterns PS01029 Dehydroquinase class II signature. 7 24 - T 22-04-2016 IPR018509 Dehydroquinase, class II, conserved site GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PP4_RS03235 28caa6acb3018a3a8b203f30ad42d94c 151 Gene3D G3DSA:3.40.50.9100 3 145 5.9E-67 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PP4_RS03235 28caa6acb3018a3a8b203f30ad42d94c 151 PIRSF PIRSF001399 1 147 2.1E-58 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PP4_RS03235 28caa6acb3018a3a8b203f30ad42d94c 151 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 17 134 1.0E-63 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PP4_RS03235 28caa6acb3018a3a8b203f30ad42d94c 151 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 151 75.303 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PP4_RS03235 28caa6acb3018a3a8b203f30ad42d94c 151 PANTHER PTHR21272 1 150 6.0E-91 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PP4_RS25345 043a33ca667dab7030e8c37c9da43cfb 387 Pfam PF00162 Phosphoglycerate kinase 6 373 5.0E-138 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 PP4_RS25345 043a33ca667dab7030e8c37c9da43cfb 387 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 8 383 38.577 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 PP4_RS25345 043a33ca667dab7030e8c37c9da43cfb 387 PIRSF PIRSF000724 1 387 2.2E-131 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 PP4_RS25345 043a33ca667dab7030e8c37c9da43cfb 387 SUPERFAMILY SSF53748 4 383 7.18E-143 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 PP4_RS25345 043a33ca667dab7030e8c37c9da43cfb 387 Gene3D G3DSA:3.40.50.1260 5 174 4.5E-63 T 22-04-2016 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 PP4_RS25345 043a33ca667dab7030e8c37c9da43cfb 387 Gene3D G3DSA:3.40.50.1270 175 371 3.0E-81 T 22-04-2016 IPR015901 Phosphoglycerate kinase, C-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 PP4_RS25345 043a33ca667dab7030e8c37c9da43cfb 387 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 15 25 - T 22-04-2016 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 PP4_RS25345 043a33ca667dab7030e8c37c9da43cfb 387 PANTHER PTHR11406 1 387 1.5E-193 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 PP4_RS25345 043a33ca667dab7030e8c37c9da43cfb 387 PRINTS PR00477 Phosphoglycerate kinase family signature 359 376 2.3E-79 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 PP4_RS25345 043a33ca667dab7030e8c37c9da43cfb 387 PRINTS PR00477 Phosphoglycerate kinase family signature 163 185 2.3E-79 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 PP4_RS25345 043a33ca667dab7030e8c37c9da43cfb 387 PRINTS PR00477 Phosphoglycerate kinase family signature 336 347 2.3E-79 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 PP4_RS25345 043a33ca667dab7030e8c37c9da43cfb 387 PRINTS PR00477 Phosphoglycerate kinase family signature 303 328 2.3E-79 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 PP4_RS25345 043a33ca667dab7030e8c37c9da43cfb 387 PRINTS PR00477 Phosphoglycerate kinase family signature 186 205 2.3E-79 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 PP4_RS25345 043a33ca667dab7030e8c37c9da43cfb 387 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 2.3E-79 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 PP4_RS25345 043a33ca667dab7030e8c37c9da43cfb 387 PRINTS PR00477 Phosphoglycerate kinase family signature 104 119 2.3E-79 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 PP4_RS25345 043a33ca667dab7030e8c37c9da43cfb 387 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 2.3E-79 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 PP4_RS25345 043a33ca667dab7030e8c37c9da43cfb 387 PRINTS PR00477 Phosphoglycerate kinase family signature 132 154 2.3E-79 T 22-04-2016 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|UniPathway: UPA00109 PP4_RS07265 88e772bcd610a73d523f3c86b4473718 258 TIGRFAM TIGR01400 fliR: flagellar biosynthetic protein FliR 13 254 2.8E-73 T 22-04-2016 IPR006303 Flagellar biosynthesis protein FliR GO:0016021|GO:0044780 PP4_RS07265 88e772bcd610a73d523f3c86b4473718 258 Pfam PF01311 Bacterial export proteins, family 1 14 245 2.0E-65 T 22-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 PP4_RS07265 88e772bcd610a73d523f3c86b4473718 258 PANTHER PTHR30065 2 258 1.2E-81 T 22-04-2016 PP4_RS07265 88e772bcd610a73d523f3c86b4473718 258 PANTHER PTHR30065:SF1 2 258 1.2E-81 T 22-04-2016 PP4_RS07265 88e772bcd610a73d523f3c86b4473718 258 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 22 43 3.4E-29 T 22-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 PP4_RS07265 88e772bcd610a73d523f3c86b4473718 258 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 180 202 3.4E-29 T 22-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 PP4_RS07265 88e772bcd610a73d523f3c86b4473718 258 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 202 221 3.4E-29 T 22-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 PP4_RS07265 88e772bcd610a73d523f3c86b4473718 258 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 81 100 3.4E-29 T 22-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 PP4_RS14205 a50c06bf2ecf3d724bdc17548ac28489 129 PANTHER PTHR37477:SF1 4 128 5.6E-16 T 22-04-2016 PP4_RS14205 a50c06bf2ecf3d724bdc17548ac28489 129 Gene3D G3DSA:3.30.420.180 3 128 9.4E-35 T 22-04-2016 IPR002750 CobE/GbiG C-terminal domain GO:0009236 PP4_RS14205 a50c06bf2ecf3d724bdc17548ac28489 129 Pfam PF01890 Cobalamin synthesis G C-terminus 5 128 5.9E-29 T 22-04-2016 IPR002750 CobE/GbiG C-terminal domain GO:0009236 PP4_RS14205 a50c06bf2ecf3d724bdc17548ac28489 129 PANTHER PTHR37477 4 128 5.6E-16 T 22-04-2016 PP4_RS14205 a50c06bf2ecf3d724bdc17548ac28489 129 SUPERFAMILY SSF159664 4 128 3.01E-35 T 22-04-2016 IPR002750 CobE/GbiG C-terminal domain GO:0009236 PP4_RS07175 9bf118a85c7d541d14ef1a9db5b3d299 405 SUPERFAMILY SSF47384 177 250 1.94E-12 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS07175 9bf118a85c7d541d14ef1a9db5b3d299 405 SMART SM00388 184 252 1.4E-14 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS07175 9bf118a85c7d541d14ef1a9db5b3d299 405 SMART SM00387 292 398 4.1E-26 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS07175 9bf118a85c7d541d14ef1a9db5b3d299 405 Pfam PF00512 His Kinase A (phospho-acceptor) domain 184 250 7.4E-13 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS07175 9bf118a85c7d541d14ef1a9db5b3d299 405 SUPERFAMILY SSF55874 267 396 4.71E-33 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS07175 9bf118a85c7d541d14ef1a9db5b3d299 405 SUPERFAMILY SSF55785 78 149 1.03E-9 T 22-04-2016 IPR000014 PAS domain PP4_RS07175 9bf118a85c7d541d14ef1a9db5b3d299 405 PANTHER PTHR24423 65 397 1.7E-76 T 22-04-2016 PP4_RS07175 9bf118a85c7d541d14ef1a9db5b3d299 405 Gene3D G3DSA:3.30.565.10 268 396 3.4E-33 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS07175 9bf118a85c7d541d14ef1a9db5b3d299 405 SMART SM00091 78 141 8.2E-8 T 22-04-2016 IPR000014 PAS domain PP4_RS07175 9bf118a85c7d541d14ef1a9db5b3d299 405 PANTHER PTHR24423:SF554 65 397 1.7E-76 T 22-04-2016 PP4_RS07175 9bf118a85c7d541d14ef1a9db5b3d299 405 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 295 396 1.5E-18 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS07175 9bf118a85c7d541d14ef1a9db5b3d299 405 Gene3D G3DSA:3.30.450.20 78 145 5.6E-9 T 22-04-2016 PP4_RS07175 9bf118a85c7d541d14ef1a9db5b3d299 405 Pfam PF13188 PAS domain 79 133 2.0E-9 T 22-04-2016 IPR000014 PAS domain PP4_RS07175 9bf118a85c7d541d14ef1a9db5b3d299 405 PRINTS PR00344 Bacterial sensor protein C-terminal signature 329 343 9.0E-16 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS07175 9bf118a85c7d541d14ef1a9db5b3d299 405 PRINTS PR00344 Bacterial sensor protein C-terminal signature 358 376 9.0E-16 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS07175 9bf118a85c7d541d14ef1a9db5b3d299 405 PRINTS PR00344 Bacterial sensor protein C-terminal signature 347 357 9.0E-16 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS07175 9bf118a85c7d541d14ef1a9db5b3d299 405 PRINTS PR00344 Bacterial sensor protein C-terminal signature 382 395 9.0E-16 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS07175 9bf118a85c7d541d14ef1a9db5b3d299 405 Gene3D G3DSA:1.10.287.130 179 248 5.7E-8 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS26685 9b848651ab2173350b71075b0f488e26 949 Pfam PF12633 Adenylate cyclase NT domain 20 216 1.5E-74 T 22-04-2016 IPR024685 Adenylate cyclase class-I, N-terminal domain KEGG: 00230+4.6.1.1 PP4_RS26685 9b848651ab2173350b71075b0f488e26 949 PANTHER PTHR38760 17 868 7.8E-260 T 22-04-2016 PP4_RS26685 9b848651ab2173350b71075b0f488e26 949 Pfam PF01295 Adenylate cyclase, class-I 244 778 8.0E-119 T 22-04-2016 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 PP4_RS26685 9b848651ab2173350b71075b0f488e26 949 PIRSF PIRSF001444 16 922 1.5E-266 T 22-04-2016 IPR000274 Adenylate cyclase, class-I GO:0004016|GO:0006171 KEGG: 00230+4.6.1.1 PP4_RS22500 e0f4697b1ec3992cf54991d8d6267c58 314 TIGRFAM TIGR01433 CyoA: ubiquinol oxidase, subunit II 15 237 8.7E-117 T 22-04-2016 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 PP4_RS22500 e0f4697b1ec3992cf54991d8d6267c58 314 Gene3D G3DSA:2.60.40.420 113 277 4.8E-41 T 22-04-2016 IPR008972 Cupredoxin PP4_RS22500 e0f4697b1ec3992cf54991d8d6267c58 314 PANTHER PTHR22888 1 265 1.9E-145 T 22-04-2016 PP4_RS22500 e0f4697b1ec3992cf54991d8d6267c58 314 Gene3D G3DSA:1.10.287.90 26 112 6.1E-36 T 22-04-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 PP4_RS22500 e0f4697b1ec3992cf54991d8d6267c58 314 SUPERFAMILY SSF49503 118 278 6.77E-50 T 22-04-2016 IPR008972 Cupredoxin PP4_RS22500 e0f4697b1ec3992cf54991d8d6267c58 314 PANTHER PTHR22888:SF13 1 265 1.9E-145 T 22-04-2016 PP4_RS22500 e0f4697b1ec3992cf54991d8d6267c58 314 SUPERFAMILY SSF81464 18 116 3.6E-24 T 22-04-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 PP4_RS22500 e0f4697b1ec3992cf54991d8d6267c58 314 Pfam PF06481 COX Aromatic Rich Motif 237 281 6.4E-17 T 22-04-2016 IPR010514 COX aromatic rich motif GO:0008827|GO:0016021|GO:0022900|GO:0055114 PP4_RS22500 e0f4697b1ec3992cf54991d8d6267c58 314 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 144 218 1.4E-6 T 22-04-2016 IPR002429 Cytochrome c oxidase subunit II C-terminal GO:0004129|GO:0005507|GO:0016020 PP4_RS22500 e0f4697b1ec3992cf54991d8d6267c58 314 PIRSF PIRSF000292 1 309 3.1E-133 T 22-04-2016 IPR006333 Cytochrome o ubiquinol oxidase subunit II GO:0016020|GO:0016682|GO:0055114 PP4_RS12560 09ef6a50fd5098803b0615140ee67fc1 290 Gene3D G3DSA:1.10.10.60 184 240 1.7E-4 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS12560 09ef6a50fd5098803b0615140ee67fc1 290 SUPERFAMILY SSF51182 33 133 4.97E-11 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS12560 09ef6a50fd5098803b0615140ee67fc1 290 SMART SM00342 204 287 3.4E-27 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS12560 09ef6a50fd5098803b0615140ee67fc1 290 Pfam PF07883 Cupin domain 37 91 1.8E-7 T 22-04-2016 IPR013096 Cupin 2, conserved barrel PP4_RS12560 09ef6a50fd5098803b0615140ee67fc1 290 PANTHER PTHR11019 1 288 1.7E-51 T 22-04-2016 PP4_RS12560 09ef6a50fd5098803b0615140ee67fc1 290 Pfam PF12833 Helix-turn-helix domain 210 288 8.7E-24 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS12560 09ef6a50fd5098803b0615140ee67fc1 290 Gene3D G3DSA:2.60.120.10 34 96 5.3E-9 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS12560 09ef6a50fd5098803b0615140ee67fc1 290 SUPERFAMILY SSF46689 243 289 4.93E-12 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS12560 09ef6a50fd5098803b0615140ee67fc1 290 PANTHER PTHR11019:SF45 1 288 1.7E-51 T 22-04-2016 PP4_RS12560 09ef6a50fd5098803b0615140ee67fc1 290 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 256 271 4.9E-7 T 22-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PP4_RS12560 09ef6a50fd5098803b0615140ee67fc1 290 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 271 287 4.9E-7 T 22-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PP4_RS12560 09ef6a50fd5098803b0615140ee67fc1 290 Gene3D G3DSA:1.10.10.60 244 288 3.7E-14 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS12145 059cc3e5a287f8095ad0860ac7a3031f 476 PANTHER PTHR11228 51 451 1.8E-36 T 22-04-2016 PP4_RS12145 059cc3e5a287f8095ad0860ac7a3031f 476 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 353 441 3.4E-15 T 22-04-2016 IPR023885 4Fe4S-binding SPASM domain PP4_RS12145 059cc3e5a287f8095ad0860ac7a3031f 476 SUPERFAMILY SSF102114 101 422 8.5E-46 T 22-04-2016 PP4_RS12145 059cc3e5a287f8095ad0860ac7a3031f 476 Pfam PF04055 Radical SAM superfamily 108 272 8.8E-12 T 22-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 PP4_RS12145 059cc3e5a287f8095ad0860ac7a3031f 476 Gene3D G3DSA:3.20.20.70 98 431 3.0E-44 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS12145 059cc3e5a287f8095ad0860ac7a3031f 476 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 108 119 - T 22-04-2016 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 PP4_RS12145 059cc3e5a287f8095ad0860ac7a3031f 476 TIGRFAM TIGR03906 quino_hemo_SAM: quinohemoprotein amine dehydrogenase maturation protein 10 475 6.1E-238 T 22-04-2016 IPR023886 Quinohemoprotein amine dehydrogenase, gamma subunit maturation protein PP4_RS12145 059cc3e5a287f8095ad0860ac7a3031f 476 Pfam PF13353 4Fe-4S single cluster domain 110 225 1.7E-13 T 22-04-2016 PP4_RS18720 2fd556ad4d0c92fd484418bcea1f8d96 311 Pfam PF01584 CheW-like domain 21 155 5.9E-38 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS18720 2fd556ad4d0c92fd484418bcea1f8d96 311 Gene3D G3DSA:3.40.50.2300 177 303 4.7E-25 T 22-04-2016 PP4_RS18720 2fd556ad4d0c92fd484418bcea1f8d96 311 SMART SM00448 179 300 8.2E-15 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS18720 2fd556ad4d0c92fd484418bcea1f8d96 311 Gene3D G3DSA:2.40.50.180 61 96 9.0E-7 T 22-04-2016 PP4_RS18720 2fd556ad4d0c92fd484418bcea1f8d96 311 PIRSF PIRSF002867 1 308 4.3E-107 T 22-04-2016 IPR024181 Chemotaxis response regulator CheV PP4_RS18720 2fd556ad4d0c92fd484418bcea1f8d96 311 Pfam PF00072 Response regulator receiver domain 181 300 1.7E-14 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS18720 2fd556ad4d0c92fd484418bcea1f8d96 311 SUPERFAMILY SSF52172 177 303 2.7E-22 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS18720 2fd556ad4d0c92fd484418bcea1f8d96 311 PANTHER PTHR22617:SF30 1 166 1.8E-76 T 22-04-2016 PP4_RS18720 2fd556ad4d0c92fd484418bcea1f8d96 311 Gene3D G3DSA:2.30.30.40 97 144 1.2E-6 T 22-04-2016 PP4_RS18720 2fd556ad4d0c92fd484418bcea1f8d96 311 PANTHER PTHR22617 1 166 1.8E-76 T 22-04-2016 PP4_RS18720 2fd556ad4d0c92fd484418bcea1f8d96 311 SUPERFAMILY SSF50341 16 157 1.26E-38 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS18720 2fd556ad4d0c92fd484418bcea1f8d96 311 SMART SM00260 17 153 9.1E-26 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS19310 53b8db4c9ff8cdf53fb7ea2848b86838 286 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 20 257 9.4E-66 T 22-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS19310 53b8db4c9ff8cdf53fb7ea2848b86838 286 Gene3D G3DSA:3.30.70.660 125 261 3.3E-49 T 22-04-2016 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS19310 53b8db4c9ff8cdf53fb7ea2848b86838 286 PIRSF PIRSF001430 18 276 2.3E-73 T 22-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS19310 53b8db4c9ff8cdf53fb7ea2848b86838 286 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 19 262 33.871 T 22-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS19310 53b8db4c9ff8cdf53fb7ea2848b86838 286 PANTHER PTHR11142 20 278 1.3E-94 T 22-04-2016 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS19310 53b8db4c9ff8cdf53fb7ea2848b86838 286 SUPERFAMILY SSF55120 19 277 5.75E-90 T 22-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS19310 53b8db4c9ff8cdf53fb7ea2848b86838 286 Pfam PF01416 tRNA pseudouridine synthase 26 121 6.6E-6 T 22-04-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS19310 53b8db4c9ff8cdf53fb7ea2848b86838 286 Pfam PF01416 tRNA pseudouridine synthase 161 263 4.7E-31 T 22-04-2016 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS19310 53b8db4c9ff8cdf53fb7ea2848b86838 286 Gene3D G3DSA:3.30.70.580 19 123 8.0E-36 T 22-04-2016 IPR020094 Pseudouridine synthase I, TruA, N-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS17370 0f0667959551ba87215576f206e836b1 258 PANTHER PTHR30251 15 230 3.4E-62 T 22-04-2016 PP4_RS17370 0f0667959551ba87215576f206e836b1 258 SUPERFAMILY SSF49354 27 155 8.9E-26 T 22-04-2016 IPR008962 PapD-like PP4_RS17370 0f0667959551ba87215576f206e836b1 258 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 36 152 3.4E-18 T 22-04-2016 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 PP4_RS17370 0f0667959551ba87215576f206e836b1 258 Gene3D G3DSA:2.60.40.360 28 154 5.4E-19 T 22-04-2016 IPR008962 PapD-like PP4_RS17370 0f0667959551ba87215576f206e836b1 258 PANTHER PTHR30251:SF4 15 230 3.4E-62 T 22-04-2016 PP4_RS23010 bce4cfc14e48232526ec7395e06da1e8 171 Gene3D G3DSA:1.10.1740.10 11 80 1.4E-12 T 22-04-2016 PP4_RS23010 bce4cfc14e48232526ec7395e06da1e8 171 Gene3D G3DSA:1.10.10.10 110 163 6.3E-12 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS23010 bce4cfc14e48232526ec7395e06da1e8 171 Pfam PF04542 Sigma-70 region 2 15 80 8.1E-17 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS23010 bce4cfc14e48232526ec7395e06da1e8 171 PANTHER PTHR30173 15 166 3.4E-34 T 22-04-2016 PP4_RS23010 bce4cfc14e48232526ec7395e06da1e8 171 Pfam PF08281 Sigma-70, region 4 111 163 4.0E-14 T 22-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS23010 bce4cfc14e48232526ec7395e06da1e8 171 PANTHER PTHR30173:SF9 15 166 3.4E-34 T 22-04-2016 PP4_RS23010 bce4cfc14e48232526ec7395e06da1e8 171 SUPERFAMILY SSF88946 13 100 2.79E-15 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS23010 bce4cfc14e48232526ec7395e06da1e8 171 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 14 161 1.9E-24 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS23010 bce4cfc14e48232526ec7395e06da1e8 171 SUPERFAMILY SSF88659 107 165 1.13E-11 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS19835 957dea68a53e47b882a90a6cec68e055 237 SMART SM00563 68 182 2.3E-44 T 22-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 PP4_RS19835 957dea68a53e47b882a90a6cec68e055 237 TIGRFAM TIGR00530 AGP_acyltrn: 1-acylglycerol-3-phosphate O-acyltransferases 66 180 1.2E-42 T 22-04-2016 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase GO:0003841|GO:0008654|GO:0016020 KEGG: 00561+2.3.1.51|KEGG: 00564+2.3.1.51|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-6453|MetaCyc: PWY-7411|MetaCyc: PWY-7417|MetaCyc: PWY-7587|MetaCyc: PWY-7589|Reactome: REACT_22258|UniPathway: UPA00557 PP4_RS19835 957dea68a53e47b882a90a6cec68e055 237 Pfam PF01553 Acyltransferase 67 180 5.9E-31 T 22-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 PP4_RS19835 957dea68a53e47b882a90a6cec68e055 237 SUPERFAMILY SSF69593 3 234 4.45E-52 T 22-04-2016 PP4_RS19835 957dea68a53e47b882a90a6cec68e055 237 PANTHER PTHR10434:SF20 1 237 1.1E-77 T 22-04-2016 PP4_RS19835 957dea68a53e47b882a90a6cec68e055 237 Gene3D G3DSA:3.40.1130.10 63 206 8.8E-23 T 22-04-2016 PP4_RS19835 957dea68a53e47b882a90a6cec68e055 237 PANTHER PTHR10434 1 237 1.1E-77 T 22-04-2016 PP4_RS08780 3741a7c3cba4b6d246e191d4089e4ece 207 PANTHER PTHR38011 2 198 1.1E-65 T 22-04-2016 PP4_RS08780 3741a7c3cba4b6d246e191d4089e4ece 207 SUPERFAMILY SSF53597 1 195 1.13E-27 T 22-04-2016 IPR024072 Dihydrofolate reductase-like domain PP4_RS08780 3741a7c3cba4b6d246e191d4089e4ece 207 Gene3D G3DSA:3.40.430.10 3 195 5.0E-27 T 22-04-2016 IPR024072 Dihydrofolate reductase-like domain PP4_RS08780 3741a7c3cba4b6d246e191d4089e4ece 207 Pfam PF01872 RibD C-terminal domain 2 189 3.3E-28 T 22-04-2016 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 PP4_RS08780 3741a7c3cba4b6d246e191d4089e4ece 207 PANTHER PTHR38011:SF2 2 198 1.1E-65 T 22-04-2016 PP4_RS26270 0537c4b6bc8a213a1a855d57a44e643e 504 SUPERFAMILY SSF55021 410 503 1.07E-26 T 22-04-2016 PP4_RS26270 0537c4b6bc8a213a1a855d57a44e643e 504 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 19 305 3.7E-82 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PP4_RS26270 0537c4b6bc8a213a1a855d57a44e643e 504 PANTHER PTHR10314 1 358 2.5E-206 T 22-04-2016 PP4_RS26270 0537c4b6bc8a213a1a855d57a44e643e 504 Gene3D G3DSA:3.40.50.1100 50 146 1.6E-35 T 22-04-2016 PP4_RS26270 0537c4b6bc8a213a1a855d57a44e643e 504 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 42 55 - T 22-04-2016 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 PP4_RS26270 0537c4b6bc8a213a1a855d57a44e643e 504 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 319 409 2.9E-26 T 22-04-2016 IPR001721 ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19|UniPathway: UPA00047 PP4_RS26270 0537c4b6bc8a213a1a855d57a44e643e 504 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 416 503 1.5E-20 T 22-04-2016 IPR001721 ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19|UniPathway: UPA00047 PP4_RS26270 0537c4b6bc8a213a1a855d57a44e643e 504 SUPERFAMILY SSF55021 326 413 3.51E-29 T 22-04-2016 PP4_RS26270 0537c4b6bc8a213a1a855d57a44e643e 504 PANTHER PTHR10314:SF30 1 358 2.5E-206 T 22-04-2016 PP4_RS26270 0537c4b6bc8a213a1a855d57a44e643e 504 SUPERFAMILY SSF53686 11 355 7.73E-106 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PP4_RS26270 0537c4b6bc8a213a1a855d57a44e643e 504 TIGRFAM TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 4 503 4.8E-243 T 22-04-2016 IPR005787 Threonine dehydratase, biosynthetic GO:0004794|GO:0009097 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19|UniPathway: UPA00047 PP4_RS26270 0537c4b6bc8a213a1a855d57a44e643e 504 Gene3D G3DSA:3.40.1020.10 394 503 6.0E-42 T 22-04-2016 PP4_RS26270 0537c4b6bc8a213a1a855d57a44e643e 504 Gene3D G3DSA:3.40.1020.10 211 393 4.0E-54 T 22-04-2016 PP4_RS19830 271e0b662a2e96812dfcce20db4ad60b 233 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 230 2.6E-30 T 22-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 PP4_RS19830 271e0b662a2e96812dfcce20db4ad60b 233 Gene3D G3DSA:3.90.226.10 2 230 5.6E-36 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS19830 271e0b662a2e96812dfcce20db4ad60b 233 PANTHER PTHR11941:SF50 1 232 1.4E-119 T 22-04-2016 PP4_RS19830 271e0b662a2e96812dfcce20db4ad60b 233 PANTHER PTHR11941 1 232 1.4E-119 T 22-04-2016 PP4_RS19830 271e0b662a2e96812dfcce20db4ad60b 233 SUPERFAMILY SSF52096 3 231 1.05E-45 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS04800 571c305e93a35c90dde3d3e4db5f0271 306 Pfam PF12833 Helix-turn-helix domain 221 294 3.1E-20 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS04800 571c305e93a35c90dde3d3e4db5f0271 306 SMART SM00342 215 298 3.2E-24 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS04800 571c305e93a35c90dde3d3e4db5f0271 306 PANTHER PTHR11019:SF81 36 306 2.9E-83 T 22-04-2016 PP4_RS04800 571c305e93a35c90dde3d3e4db5f0271 306 Gene3D G3DSA:1.10.10.60 253 294 3.6E-8 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS04800 571c305e93a35c90dde3d3e4db5f0271 306 SUPERFAMILY SSF46689 199 249 1.36E-10 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS04800 571c305e93a35c90dde3d3e4db5f0271 306 SUPERFAMILY SSF46689 251 296 9.41E-8 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS04800 571c305e93a35c90dde3d3e4db5f0271 306 Pfam PF06719 AraC-type transcriptional regulator N-terminus 35 185 2.6E-47 T 22-04-2016 IPR009594 Transcription regulator HTH, AraC, N-terminal PP4_RS04800 571c305e93a35c90dde3d3e4db5f0271 306 PANTHER PTHR11019 36 306 2.9E-83 T 22-04-2016 PP4_RS04800 571c305e93a35c90dde3d3e4db5f0271 306 Gene3D G3DSA:1.10.10.60 195 252 2.4E-18 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS07400 7bdb37e0377d31caa4662a990898b366 398 Gene3D G3DSA:1.25.40.10 188 271 1.1E-31 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS07400 7bdb37e0377d31caa4662a990898b366 398 Pfam PF13432 Tetratricopeptide repeat 138 179 1.5E-4 T 22-04-2016 PP4_RS07400 7bdb37e0377d31caa4662a990898b366 398 Pfam PF13432 Tetratricopeptide repeat 209 252 0.0028 T 22-04-2016 PP4_RS07400 7bdb37e0377d31caa4662a990898b366 398 SMART SM00028 150 183 0.12 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS07400 7bdb37e0377d31caa4662a990898b366 398 SMART SM00028 221 254 7.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS07400 7bdb37e0377d31caa4662a990898b366 398 PANTHER PTHR12558 141 357 5.5E-32 T 22-04-2016 PP4_RS07400 7bdb37e0377d31caa4662a990898b366 398 Gene3D G3DSA:1.25.40.10 138 187 8.0E-7 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS07400 7bdb37e0377d31caa4662a990898b366 398 PANTHER PTHR12558:SF12 141 357 5.5E-32 T 22-04-2016 PP4_RS07400 7bdb37e0377d31caa4662a990898b366 398 TIGRFAM TIGR03142 cytochro_ccmI: cytochrome c-type biogenesis protein CcmI 4 116 2.0E-28 T 22-04-2016 IPR017560 Cytochrome c-type biogenesis protein CcmI PP4_RS07400 7bdb37e0377d31caa4662a990898b366 398 SUPERFAMILY SSF48452 139 253 3.8E-13 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS19330 08c09dd1f5911906d8cd67f601168e89 360 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 5 353 1.1E-139 T 22-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 PP4_RS19330 08c09dd1f5911906d8cd67f601168e89 360 PANTHER PTHR11835 2 360 1.8E-208 T 22-04-2016 IPR001804 Isocitrate and isopropylmalate dehydrogenases family GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 PP4_RS19330 08c09dd1f5911906d8cd67f601168e89 360 SMART SM01329 4 353 3.4E-213 T 22-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 PP4_RS19330 08c09dd1f5911906d8cd67f601168e89 360 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 244 263 - T 22-04-2016 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 PP4_RS19330 08c09dd1f5911906d8cd67f601168e89 360 SUPERFAMILY SSF53659 1 357 5.57E-126 T 22-04-2016 PP4_RS19330 08c09dd1f5911906d8cd67f601168e89 360 Hamap MF_01033 3-isopropylmalate dehydrogenase [leuB]. 3 357 53.285 T 22-04-2016 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396|UniPathway: UPA00048 PP4_RS19330 08c09dd1f5911906d8cd67f601168e89 360 TIGRFAM TIGR00169 leuB: 3-isopropylmalate dehydrogenase 4 352 9.1E-162 T 22-04-2016 IPR004429 Isopropylmalate dehydrogenase GO:0003862|GO:0005737|GO:0009098|GO:0055114 KEGG: 00290+1.1.1.85|KEGG: 00660+1.1.1.85|MetaCyc: PWY-7396|UniPathway: UPA00048 PP4_RS19330 08c09dd1f5911906d8cd67f601168e89 360 PANTHER PTHR11835:SF35 2 360 1.8E-208 T 22-04-2016 PP4_RS19330 08c09dd1f5911906d8cd67f601168e89 360 Gene3D G3DSA:3.40.718.10 2 357 2.4E-132 T 22-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 PP4_RS07515 bf8cb07c548e188d9e46acb7846711d9 203 SUPERFAMILY SSF46689 3 78 7.18E-19 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS07515 bf8cb07c548e188d9e46acb7846711d9 203 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 58 8.3E-17 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS07515 bf8cb07c548e188d9e46acb7846711d9 203 Pfam PF08362 YcdC-like protein, C-terminal region 59 200 1.3E-62 T 22-04-2016 IPR013573 Transcription regulator YcdC, C-terminal GO:0045892 PP4_RS07515 bf8cb07c548e188d9e46acb7846711d9 203 PANTHER PTHR30055:SF53 1 163 8.9E-60 T 22-04-2016 PP4_RS07515 bf8cb07c548e188d9e46acb7846711d9 203 Gene3D G3DSA:1.10.10.60 42 64 2.0E-8 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS07515 bf8cb07c548e188d9e46acb7846711d9 203 SUPERFAMILY SSF48498 76 200 7.56E-43 T 22-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal PP4_RS07515 bf8cb07c548e188d9e46acb7846711d9 203 PANTHER PTHR30055 1 163 8.9E-60 T 22-04-2016 PP4_RS07515 bf8cb07c548e188d9e46acb7846711d9 203 Gene3D G3DSA:1.10.10.60 5 41 4.6E-17 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS07515 bf8cb07c548e188d9e46acb7846711d9 203 Gene3D G3DSA:1.10.357.10 65 200 6.0E-56 T 22-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PP4_RS07515 bf8cb07c548e188d9e46acb7846711d9 203 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 9.0E-10 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS07515 bf8cb07c548e188d9e46acb7846711d9 203 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 9.0E-10 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS14695 bb3ef983db644ab7ca02423508c3e7bb 567 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain 353 544 2.5E-61 T 22-04-2016 IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 Reactome: REACT_71 PP4_RS14695 bb3ef983db644ab7ca02423508c3e7bb 567 Gene3D G3DSA:3.40.50.620 41 109 6.8E-42 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS14695 bb3ef983db644ab7ca02423508c3e7bb 567 Gene3D G3DSA:3.40.50.620 225 275 6.8E-42 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS14695 bb3ef983db644ab7ca02423508c3e7bb 567 Gene3D G3DSA:3.90.800.10 114 222 2.3E-49 T 22-04-2016 PP4_RS14695 bb3ef983db644ab7ca02423508c3e7bb 567 TIGRFAM TIGR00440 glnS: glutamine--tRNA ligase 42 565 1.0E-237 T 22-04-2016 IPR004514 Glutamine-tRNA synthetase GO:0000166|GO:0004819|GO:0005524|GO:0005737|GO:0006425 KEGG: 00970+6.1.1.18 PP4_RS14695 bb3ef983db644ab7ca02423508c3e7bb 567 SUPERFAMILY SSF50715 353 564 4.6E-72 T 22-04-2016 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain GO:0006412 Reactome: REACT_71 PP4_RS14695 bb3ef983db644ab7ca02423508c3e7bb 567 SUPERFAMILY SSF52374 41 359 1.31E-100 T 22-04-2016 PP4_RS14695 bb3ef983db644ab7ca02423508c3e7bb 567 Gene3D G3DSA:2.40.240.10 473 563 3.2E-33 T 22-04-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: REACT_71 PP4_RS14695 bb3ef983db644ab7ca02423508c3e7bb 567 Gene3D G3DSA:2.40.240.10 361 472 4.7E-46 T 22-04-2016 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, beta-barrel domain Reactome: REACT_71 PP4_RS14695 bb3ef983db644ab7ca02423508c3e7bb 567 Gene3D G3DSA:1.10.1160.10 276 352 3.7E-35 T 22-04-2016 IPR020061 Glutamyl/glutaminyl-tRNA synthetase, class Ib, alpha-bundle domain GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: REACT_71 PP4_RS14695 bb3ef983db644ab7ca02423508c3e7bb 567 PRINTS PR00987 Glutamyl-tRNA synthetase signature 44 56 7.3E-8 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 PP4_RS14695 bb3ef983db644ab7ca02423508c3e7bb 567 PRINTS PR00987 Glutamyl-tRNA synthetase signature 73 86 7.3E-8 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 PP4_RS14695 bb3ef983db644ab7ca02423508c3e7bb 567 PRINTS PR00987 Glutamyl-tRNA synthetase signature 58 69 7.3E-8 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 PP4_RS14695 bb3ef983db644ab7ca02423508c3e7bb 567 PRINTS PR00987 Glutamyl-tRNA synthetase signature 223 233 7.3E-8 T 22-04-2016 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0005524|GO:0005737|GO:0016876|GO:0043039 Reactome: REACT_71 PP4_RS14695 bb3ef983db644ab7ca02423508c3e7bb 567 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 47 58 - T 22-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS14695 bb3ef983db644ab7ca02423508c3e7bb 567 Hamap MF_00126 Glutamine--tRNA ligase [glnS]. 14 565 55.288 T 22-04-2016 IPR022861 Glutamine-tRNA ligase, bacterial GO:0004819 KEGG: 00970+6.1.1.18 PP4_RS14695 bb3ef983db644ab7ca02423508c3e7bb 567 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 41 345 7.6E-110 T 22-04-2016 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0005524|GO:0016876|GO:0043039 Reactome: REACT_71 PP4_RS14695 bb3ef983db644ab7ca02423508c3e7bb 567 PANTHER PTHR11451:SF29 280 566 2.2E-229 T 22-04-2016 PP4_RS14695 bb3ef983db644ab7ca02423508c3e7bb 567 PANTHER PTHR11451:SF29 20 260 2.2E-229 T 22-04-2016 PP4_RS14695 bb3ef983db644ab7ca02423508c3e7bb 567 PANTHER PTHR11451 280 566 2.2E-229 T 22-04-2016 PP4_RS14695 bb3ef983db644ab7ca02423508c3e7bb 567 PANTHER PTHR11451 20 260 2.2E-229 T 22-04-2016 PP4_RS15495 c10a7791f703f32d59f8a46e3053b8ce 233 PANTHER PTHR30041:SF1 5 233 3.9E-139 T 22-04-2016 PP4_RS15495 c10a7791f703f32d59f8a46e3053b8ce 233 Gene3D G3DSA:3.40.50.360 22 223 3.4E-104 T 22-04-2016 IPR029039 Flavoprotein-like domain PP4_RS15495 c10a7791f703f32d59f8a46e3053b8ce 233 Pfam PF03358 NADPH-dependent FMN reductase 27 169 5.7E-28 T 22-04-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 PP4_RS15495 c10a7791f703f32d59f8a46e3053b8ce 233 TIGRFAM TIGR02690 resist_ArsH: arsenical resistance protein ArsH 6 219 1.9E-124 T 22-04-2016 IPR014063 Arsenate resistance ArsH PP4_RS15495 c10a7791f703f32d59f8a46e3053b8ce 233 PANTHER PTHR30041 5 233 3.9E-139 T 22-04-2016 PP4_RS15495 c10a7791f703f32d59f8a46e3053b8ce 233 SUPERFAMILY SSF52218 3 220 4.82E-67 T 22-04-2016 IPR029039 Flavoprotein-like domain PP4_RS08725 41871fa925f8d486fffb28dbaa08fa07 95 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 4 83 1.3E-29 T 22-04-2016 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 PP4_RS08725 41871fa925f8d486fffb28dbaa08fa07 95 PANTHER PTHR36924:SF2 1 86 6.3E-19 T 22-04-2016 PP4_RS08725 41871fa925f8d486fffb28dbaa08fa07 95 PANTHER PTHR36924 1 86 6.3E-19 T 22-04-2016 PP4_RS08725 41871fa925f8d486fffb28dbaa08fa07 95 SUPERFAMILY SSF47413 8 91 2.31E-21 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS08725 41871fa925f8d486fffb28dbaa08fa07 95 Gene3D G3DSA:1.10.260.40 3 91 1.8E-30 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS15545 7ed38c6c9c755b5653f32c5ebf48fbe3 778 SMART SM00564 465 496 780.0 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS15545 7ed38c6c9c755b5653f32c5ebf48fbe3 778 SMART SM00564 390 441 23.0 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS15545 7ed38c6c9c755b5653f32c5ebf48fbe3 778 SMART SM00564 322 363 3.1 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS15545 7ed38c6c9c755b5653f32c5ebf48fbe3 778 SMART SM00564 202 233 5.0E-4 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS15545 7ed38c6c9c755b5653f32c5ebf48fbe3 778 SMART SM00564 694 727 0.22 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS15545 7ed38c6c9c755b5653f32c5ebf48fbe3 778 SMART SM00564 265 297 640.0 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS15545 7ed38c6c9c755b5653f32c5ebf48fbe3 778 PANTHER PTHR32303:SF4 153 491 3.7E-145 T 22-04-2016 PP4_RS15545 7ed38c6c9c755b5653f32c5ebf48fbe3 778 PANTHER PTHR32303:SF4 561 675 3.7E-145 T 22-04-2016 PP4_RS15545 7ed38c6c9c755b5653f32c5ebf48fbe3 778 PANTHER PTHR32303:SF4 692 772 3.7E-145 T 22-04-2016 PP4_RS15545 7ed38c6c9c755b5653f32c5ebf48fbe3 778 Gene3D G3DSA:2.140.10.10 142 517 7.5E-141 T 22-04-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain PP4_RS15545 7ed38c6c9c755b5653f32c5ebf48fbe3 778 Gene3D G3DSA:2.140.10.10 553 775 7.5E-141 T 22-04-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain PP4_RS15545 7ed38c6c9c755b5653f32c5ebf48fbe3 778 PANTHER PTHR32303 153 491 3.7E-145 T 22-04-2016 PP4_RS15545 7ed38c6c9c755b5653f32c5ebf48fbe3 778 PANTHER PTHR32303 561 675 3.7E-145 T 22-04-2016 PP4_RS15545 7ed38c6c9c755b5653f32c5ebf48fbe3 778 PANTHER PTHR32303 692 772 3.7E-145 T 22-04-2016 PP4_RS15545 7ed38c6c9c755b5653f32c5ebf48fbe3 778 Pfam PF01011 PQQ enzyme repeat 424 451 4.6E-5 T 22-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat PP4_RS15545 7ed38c6c9c755b5653f32c5ebf48fbe3 778 TIGRFAM TIGR03074 PQQ_membr_DH: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family 4 772 3.0E-295 T 22-04-2016 IPR017511 PQQ-dependent membrane bound dehydrogenase, glucose/quinate/shikimate-related GO:0016021|GO:0016614|GO:0048038|GO:0055114 PP4_RS15545 7ed38c6c9c755b5653f32c5ebf48fbe3 778 SUPERFAMILY SSF50998 542 762 6.54E-134 T 22-04-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily PP4_RS15545 7ed38c6c9c755b5653f32c5ebf48fbe3 778 SUPERFAMILY SSF50998 149 505 6.54E-134 T 22-04-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily PP4_RS15545 7ed38c6c9c755b5653f32c5ebf48fbe3 778 Pfam PF13360 PQQ-like domain 649 740 8.5E-6 T 22-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat PP4_RS15545 7ed38c6c9c755b5653f32c5ebf48fbe3 778 Pfam PF13360 PQQ-like domain 194 365 2.4E-7 T 22-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat PP4_RS03215 0723da008d005c00d70fa89be12589fd 351 PIRSF PIRSF018567 1 350 9.0E-163 T 22-04-2016 IPR011391 Acetoin catabolism kinase AcoX UniPathway: UPA00040 PP4_RS03215 0723da008d005c00d70fa89be12589fd 351 SUPERFAMILY SSF111331 87 147 4.8E-7 T 22-04-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain PP4_RS03215 0723da008d005c00d70fa89be12589fd 351 Pfam PF01513 ATP-NAD kinase 7 207 2.2E-16 T 22-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 PP4_RS19005 ee0397bd9b369fe34e89acac3a070ca6 308 SUPERFAMILY SSF46785 8 89 8.84E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS19005 ee0397bd9b369fe34e89acac3a070ca6 308 Gene3D G3DSA:3.40.190.10 93 176 1.7E-21 T 22-04-2016 PP4_RS19005 ee0397bd9b369fe34e89acac3a070ca6 308 Gene3D G3DSA:3.40.190.10 273 299 1.7E-21 T 22-04-2016 PP4_RS19005 ee0397bd9b369fe34e89acac3a070ca6 308 PANTHER PTHR30118 1 304 4.2E-92 T 22-04-2016 PP4_RS19005 ee0397bd9b369fe34e89acac3a070ca6 308 Gene3D G3DSA:3.40.190.10 183 267 2.0E-25 T 22-04-2016 PP4_RS19005 ee0397bd9b369fe34e89acac3a070ca6 308 PANTHER PTHR30118:SF8 1 304 4.2E-92 T 22-04-2016 PP4_RS19005 ee0397bd9b369fe34e89acac3a070ca6 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 47 58 7.9E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS19005 ee0397bd9b369fe34e89acac3a070ca6 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 26 37 7.9E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS19005 ee0397bd9b369fe34e89acac3a070ca6 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 47 7.9E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS19005 ee0397bd9b369fe34e89acac3a070ca6 308 SUPERFAMILY SSF53850 93 297 4.89E-36 T 22-04-2016 PP4_RS19005 ee0397bd9b369fe34e89acac3a070ca6 308 Gene3D G3DSA:1.10.10.10 2 87 5.3E-28 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS19005 ee0397bd9b369fe34e89acac3a070ca6 308 Pfam PF03466 LysR substrate binding domain 100 297 4.9E-23 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS19005 ee0397bd9b369fe34e89acac3a070ca6 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 69 3.6E-16 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS05685 30b5fc5cce34c28978110276c2843170 293 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 200 217 5.6E-27 T 22-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) PP4_RS05685 30b5fc5cce34c28978110276c2843170 293 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 92 113 5.6E-27 T 22-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) PP4_RS05685 30b5fc5cce34c28978110276c2843170 293 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 242 260 5.6E-27 T 22-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) PP4_RS05685 30b5fc5cce34c28978110276c2843170 293 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 14 31 5.6E-27 T 22-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) PP4_RS05685 30b5fc5cce34c28978110276c2843170 293 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 135 157 5.6E-27 T 22-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) PP4_RS05685 30b5fc5cce34c28978110276c2843170 293 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 14 260 6.3E-83 T 22-04-2016 IPR013658 SMP-30/Gluconolactonase/LRE-like region PP4_RS05685 30b5fc5cce34c28978110276c2843170 293 PANTHER PTHR10907 4 291 2.0E-67 T 22-04-2016 PP4_RS05685 30b5fc5cce34c28978110276c2843170 293 PANTHER PTHR10907:SF47 4 291 2.0E-67 T 22-04-2016 PP4_RS05685 30b5fc5cce34c28978110276c2843170 293 Gene3D G3DSA:2.120.10.30 4 292 3.6E-87 T 22-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like PP4_RS05685 30b5fc5cce34c28978110276c2843170 293 SUPERFAMILY SSF63829 5 290 2.94E-64 T 22-04-2016 PP4_RS09455 bc1f76c692ac2797b8fe4c1a3c640400 279 Gene3D G3DSA:3.90.550.10 2 267 1.8E-65 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS09455 bc1f76c692ac2797b8fe4c1a3c640400 279 SUPERFAMILY SSF53448 2 269 6.31E-64 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS09455 bc1f76c692ac2797b8fe4c1a3c640400 279 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 2 264 2.7E-120 T 22-04-2016 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343 PP4_RS09455 bc1f76c692ac2797b8fe4c1a3c640400 279 PANTHER PTHR22572 4 274 9.8E-98 T 22-04-2016 PP4_RS09455 bc1f76c692ac2797b8fe4c1a3c640400 279 Pfam PF00483 Nucleotidyl transferase 9 267 7.7E-32 T 22-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 PP4_RS09455 bc1f76c692ac2797b8fe4c1a3c640400 279 PANTHER PTHR22572:SF14 4 274 9.8E-98 T 22-04-2016 PP4_RS20975 6b4f9917ea1f37e7404552cbea56b965 207 Pfam PF01351 Ribonuclease HII 15 191 4.6E-39 T 22-04-2016 IPR024567 Ribonuclease HII/HIII domain PP4_RS20975 6b4f9917ea1f37e7404552cbea56b965 207 SUPERFAMILY SSF53098 13 197 3.64E-68 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PP4_RS20975 6b4f9917ea1f37e7404552cbea56b965 207 Gene3D G3DSA:3.30.420.10 13 152 1.7E-48 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PP4_RS20975 6b4f9917ea1f37e7404552cbea56b965 207 PANTHER PTHR10954 11 199 1.4E-79 T 22-04-2016 IPR001352 Ribonuclease HII/HIII GO:0003723|GO:0004523 PP4_RS20975 6b4f9917ea1f37e7404552cbea56b965 207 Hamap MF_00052_B Ribonuclease HII [rnhB]. 13 192 38.187 T 22-04-2016 IPR022898 Ribonuclease HII GO:0004523 PP4_RS07005 387c38c0aca4142c3964dc1aa65997e0 309 SUPERFAMILY SSF52172 180 303 4.98E-24 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS07005 387c38c0aca4142c3964dc1aa65997e0 309 PIRSF PIRSF002867 1 309 9.8E-108 T 22-04-2016 IPR024181 Chemotaxis response regulator CheV PP4_RS07005 387c38c0aca4142c3964dc1aa65997e0 309 SMART SM00448 180 301 2.2E-18 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS07005 387c38c0aca4142c3964dc1aa65997e0 309 Gene3D G3DSA:2.40.50.180 60 96 9.2E-7 T 22-04-2016 PP4_RS07005 387c38c0aca4142c3964dc1aa65997e0 309 Pfam PF01584 CheW-like domain 21 157 1.9E-37 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS07005 387c38c0aca4142c3964dc1aa65997e0 309 SMART SM00260 17 154 3.9E-24 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS07005 387c38c0aca4142c3964dc1aa65997e0 309 SUPERFAMILY SSF50341 16 157 4.84E-38 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS07005 387c38c0aca4142c3964dc1aa65997e0 309 Gene3D G3DSA:3.40.50.2300 180 302 9.9E-28 T 22-04-2016 PP4_RS07005 387c38c0aca4142c3964dc1aa65997e0 309 PANTHER PTHR22617 1 170 9.6E-93 T 22-04-2016 PP4_RS07005 387c38c0aca4142c3964dc1aa65997e0 309 Pfam PF00072 Response regulator receiver domain 182 301 2.0E-17 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS07005 387c38c0aca4142c3964dc1aa65997e0 309 Gene3D G3DSA:2.30.30.40 97 145 1.6E-8 T 22-04-2016 PP4_RS07005 387c38c0aca4142c3964dc1aa65997e0 309 PANTHER PTHR22617:SF30 1 170 9.6E-93 T 22-04-2016 PP4_RS08630 dded950a0d21f7d330f9a39baa22444f 535 SUPERFAMILY SSF52096 23 270 1.15E-75 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS08630 dded950a0d21f7d330f9a39baa22444f 535 PANTHER PTHR22855 1 535 0.0 T 22-04-2016 PP4_RS08630 dded950a0d21f7d330f9a39baa22444f 535 Gene3D G3DSA:3.90.226.10 35 274 3.4E-85 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS08630 dded950a0d21f7d330f9a39baa22444f 535 Gene3D G3DSA:3.90.226.10 280 530 4.3E-93 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS08630 dded950a0d21f7d330f9a39baa22444f 535 PANTHER PTHR22855:SF35 1 535 0.0 T 22-04-2016 PP4_RS08630 dded950a0d21f7d330f9a39baa22444f 535 SUPERFAMILY SSF52096 237 517 1.47E-88 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS08630 dded950a0d21f7d330f9a39baa22444f 535 Pfam PF01039 Carboxyl transferase domain 48 525 2.8E-154 T 22-04-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PP4_RS17335 6445138a31b0d6445c0e7d7988a067bf 320 Pfam PF09084 NMT1/THI5 like 55 251 1.1E-18 T 22-04-2016 IPR015168 SsuA/THI5-like PP4_RS17335 6445138a31b0d6445c0e7d7988a067bf 320 PANTHER PTHR30024:SF11 1 317 1.7E-127 T 22-04-2016 PP4_RS17335 6445138a31b0d6445c0e7d7988a067bf 320 Gene3D G3DSA:3.40.190.10 72 127 8.8E-4 T 22-04-2016 PP4_RS17335 6445138a31b0d6445c0e7d7988a067bf 320 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 30 311 3.4E-63 T 22-04-2016 IPR010067 Aliphatic sulfonates-binding protein GO:0006790|GO:0006810|GO:0016020 PP4_RS17335 6445138a31b0d6445c0e7d7988a067bf 320 SUPERFAMILY SSF53850 28 256 1.62E-48 T 22-04-2016 PP4_RS17335 6445138a31b0d6445c0e7d7988a067bf 320 Gene3D G3DSA:3.40.190.10 128 236 1.2E-31 T 22-04-2016 PP4_RS17335 6445138a31b0d6445c0e7d7988a067bf 320 SMART SM00062 29 258 5.3E-19 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS17335 6445138a31b0d6445c0e7d7988a067bf 320 PANTHER PTHR30024 1 317 1.7E-127 T 22-04-2016 PP4_RS06970 27b2ccde0d42cfb4b497c3cf099b146f 161 SUPERFAMILY SSF46785 3 63 7.56E-17 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS06970 27b2ccde0d42cfb4b497c3cf099b146f 161 Gene3D G3DSA:3.30.70.920 57 140 6.2E-30 T 22-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PP4_RS06970 27b2ccde0d42cfb4b497c3cf099b146f 161 PANTHER PTHR30154:SF15 1 152 6.3E-59 T 22-04-2016 PP4_RS06970 27b2ccde0d42cfb4b497c3cf099b146f 161 ProSitePatterns PS00519 AsnC-type HTH domain signature. 22 48 - T 22-04-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PP4_RS06970 27b2ccde0d42cfb4b497c3cf099b146f 161 Pfam PF13412 Winged helix-turn-helix DNA-binding 4 51 3.3E-18 T 22-04-2016 PP4_RS06970 27b2ccde0d42cfb4b497c3cf099b146f 161 PANTHER PTHR30154 1 152 6.3E-59 T 22-04-2016 PP4_RS06970 27b2ccde0d42cfb4b497c3cf099b146f 161 Gene3D G3DSA:1.10.10.10 1 54 4.1E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS06970 27b2ccde0d42cfb4b497c3cf099b146f 161 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 2.5E-16 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS06970 27b2ccde0d42cfb4b497c3cf099b146f 161 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 2.5E-16 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS06970 27b2ccde0d42cfb4b497c3cf099b146f 161 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 2.5E-16 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS06970 27b2ccde0d42cfb4b497c3cf099b146f 161 SMART SM00344 4 113 2.0E-53 T 22-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 PP4_RS06970 27b2ccde0d42cfb4b497c3cf099b146f 161 Pfam PF01037 Lrp/AsnC ligand binding domain 70 143 4.9E-25 T 22-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PP4_RS06970 27b2ccde0d42cfb4b497c3cf099b146f 161 SUPERFAMILY SSF54909 64 152 3.49E-23 T 22-04-2016 IPR011008 Dimeric alpha-beta barrel PP4_RS10485 a49604e43f4f406c9d2d111558571d4b 400 PANTHER PTHR11751 14 395 7.2E-147 T 22-04-2016 PP4_RS10485 a49604e43f4f406c9d2d111558571d4b 400 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 236 249 - T 22-04-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 PP4_RS10485 a49604e43f4f406c9d2d111558571d4b 400 PANTHER PTHR11751:SF306 14 395 7.2E-147 T 22-04-2016 PP4_RS10485 a49604e43f4f406c9d2d111558571d4b 400 SUPERFAMILY SSF53383 3 396 2.55E-109 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS10485 a49604e43f4f406c9d2d111558571d4b 400 Gene3D G3DSA:3.40.640.10 45 275 3.1E-74 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS10485 a49604e43f4f406c9d2d111558571d4b 400 Pfam PF00155 Aminotransferase class I and II 32 390 1.5E-67 T 22-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PP4_RS10485 a49604e43f4f406c9d2d111558571d4b 400 Gene3D G3DSA:3.90.1150.10 276 397 1.7E-38 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS16060 974867b93b6213803de6dddabf056590 291 PANTHER PTHR31964 137 291 5.6E-26 T 22-04-2016 PP4_RS16060 974867b93b6213803de6dddabf056590 291 Pfam PF00582 Universal stress protein family 152 291 9.2E-28 T 22-04-2016 IPR006016 UspA GO:0006950 PP4_RS16060 974867b93b6213803de6dddabf056590 291 Pfam PF00582 Universal stress protein family 5 145 5.9E-26 T 22-04-2016 IPR006016 UspA GO:0006950 PP4_RS16060 974867b93b6213803de6dddabf056590 291 Gene3D G3DSA:3.40.50.620 149 291 2.8E-32 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS16060 974867b93b6213803de6dddabf056590 291 PRINTS PR01438 Universal stress protein signature 251 263 3.1E-16 T 22-04-2016 IPR006015 Universal stress protein A PP4_RS16060 974867b93b6213803de6dddabf056590 291 PRINTS PR01438 Universal stress protein signature 152 170 3.1E-16 T 22-04-2016 IPR006015 Universal stress protein A PP4_RS16060 974867b93b6213803de6dddabf056590 291 PRINTS PR01438 Universal stress protein signature 269 291 3.1E-16 T 22-04-2016 IPR006015 Universal stress protein A PP4_RS16060 974867b93b6213803de6dddabf056590 291 SUPERFAMILY SSF52402 4 146 1.09E-29 T 22-04-2016 PP4_RS16060 974867b93b6213803de6dddabf056590 291 Gene3D G3DSA:3.40.50.620 2 146 6.5E-31 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS16060 974867b93b6213803de6dddabf056590 291 PANTHER PTHR31964:SF26 137 291 5.6E-26 T 22-04-2016 PP4_RS16060 974867b93b6213803de6dddabf056590 291 SUPERFAMILY SSF52402 152 291 1.34E-30 T 22-04-2016 PP4_RS06820 a976bae4b20fc52d5822c4fac1c5fd35 254 Gene3D G3DSA:3.40.50.300 4 249 4.1E-77 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS06820 a976bae4b20fc52d5822c4fac1c5fd35 254 PANTHER PTHR24220 5 254 1.2E-175 T 22-04-2016 PP4_RS06820 a976bae4b20fc52d5822c4fac1c5fd35 254 SMART SM00382 28 225 1.2E-13 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS06820 a976bae4b20fc52d5822c4fac1c5fd35 254 SUPERFAMILY SSF52540 4 248 3.47E-72 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS06820 a976bae4b20fc52d5822c4fac1c5fd35 254 PANTHER PTHR24220:SF347 5 254 1.2E-175 T 22-04-2016 PP4_RS06820 a976bae4b20fc52d5822c4fac1c5fd35 254 PIRSF PIRSF039085 1 254 7.3E-115 T 22-04-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 PP4_RS06820 a976bae4b20fc52d5822c4fac1c5fd35 254 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS06820 a976bae4b20fc52d5822c4fac1c5fd35 254 Pfam PF00005 ABC transporter 19 178 1.6E-33 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS02260 1ed4482b0960e48668e0aeb310fda9df 415 SUPERFAMILY SSF161098 27 53 1.8E-44 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS02260 1ed4482b0960e48668e0aeb310fda9df 415 SUPERFAMILY SSF161098 167 406 1.8E-44 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS02260 1ed4482b0960e48668e0aeb310fda9df 415 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 216 406 2.1E-8 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS02260 1ed4482b0960e48668e0aeb310fda9df 415 PANTHER PTHR30193:SF8 178 413 5.2E-160 T 22-04-2016 PP4_RS02260 1ed4482b0960e48668e0aeb310fda9df 415 PANTHER PTHR30193:SF8 8 71 5.2E-160 T 22-04-2016 PP4_RS02260 1ed4482b0960e48668e0aeb310fda9df 415 PANTHER PTHR30193 178 413 5.2E-160 T 22-04-2016 PP4_RS02260 1ed4482b0960e48668e0aeb310fda9df 415 PANTHER PTHR30193 8 71 5.2E-160 T 22-04-2016 PP4_RS02260 1ed4482b0960e48668e0aeb310fda9df 415 Gene3D G3DSA:1.10.3720.10 33 59 4.7E-49 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS02260 1ed4482b0960e48668e0aeb310fda9df 415 Gene3D G3DSA:1.10.3720.10 176 409 4.7E-49 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS11480 1eda4459437a5e83062bad6464c1e93e 805 Pfam PF01011 PQQ enzyme repeat 450 480 1.7E-7 T 22-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat PP4_RS11480 1eda4459437a5e83062bad6464c1e93e 805 Pfam PF01011 PQQ enzyme repeat 227 252 3.8E-7 T 22-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat PP4_RS11480 1eda4459437a5e83062bad6464c1e93e 805 Pfam PF01011 PQQ enzyme repeat 500 532 1.6E-4 T 22-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat PP4_RS11480 1eda4459437a5e83062bad6464c1e93e 805 Pfam PF01011 PQQ enzyme repeat 372 396 3.3E-4 T 22-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat PP4_RS11480 1eda4459437a5e83062bad6464c1e93e 805 TIGRFAM TIGR03074 PQQ_membr_DH: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family 18 805 0.0 T 22-04-2016 IPR017511 PQQ-dependent membrane bound dehydrogenase, glucose/quinate/shikimate-related GO:0016021|GO:0016614|GO:0048038|GO:0055114 PP4_RS11480 1eda4459437a5e83062bad6464c1e93e 805 SMART SM00564 494 525 74.0 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS11480 1eda4459437a5e83062bad6464c1e93e 805 SMART SM00564 660 699 130.0 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS11480 1eda4459437a5e83062bad6464c1e93e 805 SMART SM00564 420 470 130.0 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS11480 1eda4459437a5e83062bad6464c1e93e 805 SMART SM00564 727 760 0.0024 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS11480 1eda4459437a5e83062bad6464c1e93e 805 SMART SM00564 221 253 0.58 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS11480 1eda4459437a5e83062bad6464c1e93e 805 SMART SM00564 351 392 180.0 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS11480 1eda4459437a5e83062bad6464c1e93e 805 PANTHER PTHR32303 590 805 1.0E-132 T 22-04-2016 PP4_RS11480 1eda4459437a5e83062bad6464c1e93e 805 PANTHER PTHR32303 284 520 1.0E-132 T 22-04-2016 PP4_RS11480 1eda4459437a5e83062bad6464c1e93e 805 PANTHER PTHR32303 132 265 1.0E-132 T 22-04-2016 PP4_RS11480 1eda4459437a5e83062bad6464c1e93e 805 Gene3D G3DSA:2.140.10.10 158 546 1.6E-138 T 22-04-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain PP4_RS11480 1eda4459437a5e83062bad6464c1e93e 805 Gene3D G3DSA:2.140.10.10 582 805 1.6E-138 T 22-04-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain PP4_RS11480 1eda4459437a5e83062bad6464c1e93e 805 PANTHER PTHR32303:SF4 590 805 1.0E-132 T 22-04-2016 PP4_RS11480 1eda4459437a5e83062bad6464c1e93e 805 PANTHER PTHR32303:SF4 284 520 1.0E-132 T 22-04-2016 PP4_RS11480 1eda4459437a5e83062bad6464c1e93e 805 PANTHER PTHR32303:SF4 132 265 1.0E-132 T 22-04-2016 PP4_RS11480 1eda4459437a5e83062bad6464c1e93e 805 ProSitePatterns PS00364 Bacterial quinoprotein dehydrogenases signature 2. 416 437 - T 22-04-2016 IPR001479 Quinoprotein dehydrogenase, conserved site GO:0030288|GO:0055114 PP4_RS11480 1eda4459437a5e83062bad6464c1e93e 805 SUPERFAMILY SSF50998 166 534 5.76E-141 T 22-04-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily PP4_RS11480 1eda4459437a5e83062bad6464c1e93e 805 SUPERFAMILY SSF50998 571 789 5.76E-141 T 22-04-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily PP4_RS11480 1eda4459437a5e83062bad6464c1e93e 805 Pfam PF13360 PQQ-like domain 682 786 1.8E-4 T 22-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat PP4_RS07995 45791e8989a01ecfff33950013d01f3f 234 Gene3D G3DSA:1.10.1060.10 105 232 8.0E-47 T 22-04-2016 PP4_RS07995 45791e8989a01ecfff33950013d01f3f 234 SUPERFAMILY SSF54292 2 103 1.43E-24 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS07995 45791e8989a01ecfff33950013d01f3f 234 TIGRFAM TIGR00384 dhsB: succinate dehydrogenase and fumarate reductase iron-sulfur protein 6 226 6.7E-82 T 22-04-2016 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein GO:0006099|GO:0016491|GO:0055114 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 PP4_RS07995 45791e8989a01ecfff33950013d01f3f 234 Pfam PF13534 4Fe-4S dicluster domain 144 217 7.8E-9 T 22-04-2016 PP4_RS07995 45791e8989a01ecfff33950013d01f3f 234 Pfam PF13085 2Fe-2S iron-sulfur cluster binding domain 4 107 1.7E-28 T 22-04-2016 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal GO:0009055|GO:0051536 KEGG: 00020+1.3.5.1|KEGG: 00190+1.3.5.1|KEGG: 00650+1.3.5.1|KEGG: 00720+1.3.5.1|MetaCyc: PWY-3781|MetaCyc: PWY-4302|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7279 PP4_RS07995 45791e8989a01ecfff33950013d01f3f 234 PANTHER PTHR11921 1 231 1.1E-126 T 22-04-2016 PP4_RS07995 45791e8989a01ecfff33950013d01f3f 234 Gene3D G3DSA:3.10.20.30 2 103 1.2E-32 T 22-04-2016 IPR012675 Beta-grasp domain PP4_RS07995 45791e8989a01ecfff33950013d01f3f 234 SUPERFAMILY SSF46548 104 231 2.09E-38 T 22-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 PP4_RS07995 45791e8989a01ecfff33950013d01f3f 234 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 145 156 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PP4_RS00845 d8251e919e7681928e88021636e506d6 718 PANTHER PTHR24221 140 708 6.8E-217 T 22-04-2016 PP4_RS00845 d8251e919e7681928e88021636e506d6 718 PANTHER PTHR24221 41 81 6.8E-217 T 22-04-2016 PP4_RS00845 d8251e919e7681928e88021636e506d6 718 TIGRFAM TIGR03375 type_I_sec_LssB: type I secretion system ATPase 20 714 3.9E-293 T 22-04-2016 IPR017750 ATPase, type I secretion system PP4_RS00845 d8251e919e7681928e88021636e506d6 718 PANTHER PTHR24221:SF248 140 708 6.8E-217 T 22-04-2016 PP4_RS00845 d8251e919e7681928e88021636e506d6 718 PANTHER PTHR24221:SF248 41 81 6.8E-217 T 22-04-2016 PP4_RS00845 d8251e919e7681928e88021636e506d6 718 Pfam PF00664 ABC transporter transmembrane region 172 432 1.7E-21 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PP4_RS00845 d8251e919e7681928e88021636e506d6 718 SUPERFAMILY SSF90123 157 467 5.62E-50 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PP4_RS00845 d8251e919e7681928e88021636e506d6 718 SUPERFAMILY SSF52540 476 708 3.04E-75 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS00845 d8251e919e7681928e88021636e506d6 718 Gene3D G3DSA:3.40.50.300 483 708 1.4E-73 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS00845 d8251e919e7681928e88021636e506d6 718 Gene3D G3DSA:3.90.70.10 17 141 3.1E-39 T 22-04-2016 PP4_RS00845 d8251e919e7681928e88021636e506d6 718 Pfam PF00005 ABC transporter 501 650 4.9E-34 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS00845 d8251e919e7681928e88021636e506d6 718 Gene3D G3DSA:1.20.1560.10 157 465 3.6E-50 T 22-04-2016 PP4_RS00845 d8251e919e7681928e88021636e506d6 718 SMART SM00382 510 696 4.1E-18 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS26110 32cff183589d2f2c823c15df372806fe 284 PANTHER PTHR11364 1 283 2.4E-91 T 22-04-2016 PP4_RS26110 32cff183589d2f2c823c15df372806fe 284 SMART SM00450 158 278 1.2E-8 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS26110 32cff183589d2f2c823c15df372806fe 284 SMART SM00450 7 135 2.4E-18 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS26110 32cff183589d2f2c823c15df372806fe 284 Pfam PF00581 Rhodanese-like domain 160 274 1.2E-9 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS26110 32cff183589d2f2c823c15df372806fe 284 Pfam PF00581 Rhodanese-like domain 8 131 5.2E-18 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS26110 32cff183589d2f2c823c15df372806fe 284 PANTHER PTHR11364:SF0 1 283 2.4E-91 T 22-04-2016 PP4_RS26110 32cff183589d2f2c823c15df372806fe 284 SUPERFAMILY SSF52821 2 149 1.57E-39 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS26110 32cff183589d2f2c823c15df372806fe 284 Gene3D G3DSA:3.40.250.10 151 284 4.2E-34 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS26110 32cff183589d2f2c823c15df372806fe 284 Gene3D G3DSA:3.40.250.10 3 150 3.4E-45 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS26110 32cff183589d2f2c823c15df372806fe 284 SUPERFAMILY SSF52821 161 283 8.25E-30 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS19845 f68f80336c326dbe88cf1983dcbfe0a3 243 PANTHER PTHR11922 1 202 3.6E-37 T 22-04-2016 PP4_RS19845 f68f80336c326dbe88cf1983dcbfe0a3 243 SUPERFAMILY SSF52317 3 236 3.95E-43 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS19845 f68f80336c326dbe88cf1983dcbfe0a3 243 Gene3D G3DSA:3.40.50.880 17 226 1.3E-41 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS19845 f68f80336c326dbe88cf1983dcbfe0a3 243 PANTHER PTHR11922:SF34 1 202 3.6E-37 T 22-04-2016 PP4_RS19845 f68f80336c326dbe88cf1983dcbfe0a3 243 Pfam PF00117 Glutamine amidotransferase class-I 72 191 3.2E-12 T 22-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 PP4_RS00755 3f57087ecc7bb928342fb53e06ea95d6 393 PANTHER PTHR10909 4 392 7.0E-269 T 22-04-2016 PP4_RS00755 3f57087ecc7bb928342fb53e06ea95d6 393 PANTHER PTHR10909:SF307 4 392 7.0E-269 T 22-04-2016 PP4_RS00755 3f57087ecc7bb928342fb53e06ea95d6 393 SUPERFAMILY SSF47203 242 391 1.5E-42 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS00755 3f57087ecc7bb928342fb53e06ea95d6 393 SUPERFAMILY SSF56645 7 238 9.42E-79 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 PP4_RS00755 3f57087ecc7bb928342fb53e06ea95d6 393 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 136 227 2.0E-21 T 22-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 PP4_RS00755 3f57087ecc7bb928342fb53e06ea95d6 393 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 240 385 5.2E-28 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS00755 3f57087ecc7bb928342fb53e06ea95d6 393 Gene3D G3DSA:1.10.540.10 5 134 2.5E-42 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS00755 3f57087ecc7bb928342fb53e06ea95d6 393 Gene3D G3DSA:2.40.110.10 135 226 1.5E-32 T 22-04-2016 PP4_RS00755 3f57087ecc7bb928342fb53e06ea95d6 393 Gene3D G3DSA:1.20.140.10 227 388 2.7E-45 T 22-04-2016 PP4_RS00755 3f57087ecc7bb928342fb53e06ea95d6 393 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 345 364 - T 22-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 PP4_RS00755 3f57087ecc7bb928342fb53e06ea95d6 393 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 20 132 1.4E-35 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS07935 1da16fe25dddeb8b0fb6009c04bca901 309 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 190 272 1.3E-36 T 22-04-2016 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal PP4_RS07935 1da16fe25dddeb8b0fb6009c04bca901 309 ProSitePatterns PS00696 Electron transfer flavoprotein alpha-subunit signature. 253 279 - T 22-04-2016 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site PP4_RS07935 1da16fe25dddeb8b0fb6009c04bca901 309 SUPERFAMILY SSF52402 3 186 1.53E-58 T 22-04-2016 PP4_RS07935 1da16fe25dddeb8b0fb6009c04bca901 309 Gene3D G3DSA:3.40.50.1220 184 307 8.1E-62 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain PP4_RS07935 1da16fe25dddeb8b0fb6009c04bca901 309 Pfam PF01012 Electron transfer flavoprotein domain 4 170 5.6E-41 T 22-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 PP4_RS07935 1da16fe25dddeb8b0fb6009c04bca901 309 PANTHER PTHR10909 104 305 9.5E-130 T 22-04-2016 PP4_RS07935 1da16fe25dddeb8b0fb6009c04bca901 309 PANTHER PTHR10909:SF294 104 305 9.5E-130 T 22-04-2016 PP4_RS07935 1da16fe25dddeb8b0fb6009c04bca901 309 SMART SM00893 3 182 9.0E-56 T 22-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 PP4_RS07935 1da16fe25dddeb8b0fb6009c04bca901 309 PIRSF PIRSF000089 1 309 3.9E-106 T 22-04-2016 IPR001308 Electron transfer flavoprotein alpha subunit/FixB GO:0009055|GO:0050660 PP4_RS07935 1da16fe25dddeb8b0fb6009c04bca901 309 SUPERFAMILY SSF52467 187 308 6.87E-49 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain PP4_RS07935 1da16fe25dddeb8b0fb6009c04bca901 309 Gene3D G3DSA:3.40.50.620 1 182 1.5E-65 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS00335 a95263843d054348fbaeea767a80a03e 521 SUPERFAMILY SSF52091 424 517 7.06E-17 T 22-04-2016 IPR002645 STAS domain PP4_RS00335 a95263843d054348fbaeea767a80a03e 521 PANTHER PTHR11814:SF71 4 508 8.7E-160 T 22-04-2016 PP4_RS00335 a95263843d054348fbaeea767a80a03e 521 PANTHER PTHR11814 4 508 8.7E-160 T 22-04-2016 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 Reactome: REACT_15518 PP4_RS00335 a95263843d054348fbaeea767a80a03e 521 Gene3D G3DSA:3.30.750.24 424 510 2.1E-15 T 22-04-2016 IPR002645 STAS domain PP4_RS00335 a95263843d054348fbaeea767a80a03e 521 Pfam PF00916 Sulfate permease family 22 391 7.2E-82 T 22-04-2016 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 PP4_RS00335 a95263843d054348fbaeea767a80a03e 521 Pfam PF01740 STAS domain 434 510 3.0E-11 T 22-04-2016 IPR002645 STAS domain PP4_RS09825 36b0d16748e1c1ad4006676367fcb4d0 743 Gene3D G3DSA:2.60.40.420 288 349 1.1E-4 T 22-04-2016 IPR008972 Cupredoxin PP4_RS09825 36b0d16748e1c1ad4006676367fcb4d0 743 Gene3D G3DSA:2.60.40.420 386 433 1.1E-4 T 22-04-2016 IPR008972 Cupredoxin PP4_RS09825 36b0d16748e1c1ad4006676367fcb4d0 743 PANTHER PTHR11709:SF2 392 478 2.6E-37 T 22-04-2016 PP4_RS09825 36b0d16748e1c1ad4006676367fcb4d0 743 PANTHER PTHR11709:SF2 146 221 2.6E-37 T 22-04-2016 PP4_RS09825 36b0d16748e1c1ad4006676367fcb4d0 743 PANTHER PTHR11709:SF2 505 736 2.6E-37 T 22-04-2016 PP4_RS09825 36b0d16748e1c1ad4006676367fcb4d0 743 PANTHER PTHR11709:SF2 304 353 2.6E-37 T 22-04-2016 PP4_RS09825 36b0d16748e1c1ad4006676367fcb4d0 743 PANTHER PTHR11709:SF2 69 96 2.6E-37 T 22-04-2016 PP4_RS09825 36b0d16748e1c1ad4006676367fcb4d0 743 PANTHER PTHR11709:SF2 237 282 2.6E-37 T 22-04-2016 PP4_RS09825 36b0d16748e1c1ad4006676367fcb4d0 743 Pfam PF07731 Multicopper oxidase 597 708 1.4E-18 T 22-04-2016 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 PP4_RS09825 36b0d16748e1c1ad4006676367fcb4d0 743 SUPERFAMILY SSF49503 64 97 3.6E-17 T 22-04-2016 IPR008972 Cupredoxin PP4_RS09825 36b0d16748e1c1ad4006676367fcb4d0 743 SUPERFAMILY SSF49503 149 221 3.6E-17 T 22-04-2016 IPR008972 Cupredoxin PP4_RS09825 36b0d16748e1c1ad4006676367fcb4d0 743 Pfam PF07732 Multicopper oxidase 147 220 5.0E-9 T 22-04-2016 IPR011707 Multicopper oxidase, type 3 GO:0005507 PP4_RS09825 36b0d16748e1c1ad4006676367fcb4d0 743 ProSitePatterns PS00079 Multicopper oxidases signature 1. 688 708 - T 22-04-2016 IPR033138 Multicopper oxidases, conserved site PP4_RS09825 36b0d16748e1c1ad4006676367fcb4d0 743 PANTHER PTHR11709 392 478 2.6E-37 T 22-04-2016 PP4_RS09825 36b0d16748e1c1ad4006676367fcb4d0 743 PANTHER PTHR11709 146 221 2.6E-37 T 22-04-2016 PP4_RS09825 36b0d16748e1c1ad4006676367fcb4d0 743 PANTHER PTHR11709 505 736 2.6E-37 T 22-04-2016 PP4_RS09825 36b0d16748e1c1ad4006676367fcb4d0 743 PANTHER PTHR11709 304 353 2.6E-37 T 22-04-2016 PP4_RS09825 36b0d16748e1c1ad4006676367fcb4d0 743 PANTHER PTHR11709 69 96 2.6E-37 T 22-04-2016 PP4_RS09825 36b0d16748e1c1ad4006676367fcb4d0 743 PANTHER PTHR11709 237 282 2.6E-37 T 22-04-2016 PP4_RS09825 36b0d16748e1c1ad4006676367fcb4d0 743 Gene3D G3DSA:2.60.40.420 146 224 1.4E-15 T 22-04-2016 IPR008972 Cupredoxin PP4_RS09825 36b0d16748e1c1ad4006676367fcb4d0 743 Gene3D G3DSA:2.60.40.420 61 93 1.4E-15 T 22-04-2016 IPR008972 Cupredoxin PP4_RS09825 36b0d16748e1c1ad4006676367fcb4d0 743 SUPERFAMILY SSF49503 608 710 3.54E-17 T 22-04-2016 IPR008972 Cupredoxin PP4_RS09825 36b0d16748e1c1ad4006676367fcb4d0 743 ProSitePatterns PS00080 Multicopper oxidases signature 2. 693 704 - T 22-04-2016 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 PP4_RS09825 36b0d16748e1c1ad4006676367fcb4d0 743 SUPERFAMILY SSF49503 388 438 2.89E-5 T 22-04-2016 IPR008972 Cupredoxin PP4_RS09825 36b0d16748e1c1ad4006676367fcb4d0 743 SUPERFAMILY SSF49503 290 349 2.89E-5 T 22-04-2016 IPR008972 Cupredoxin PP4_RS09825 36b0d16748e1c1ad4006676367fcb4d0 743 Gene3D G3DSA:2.60.40.420 600 712 7.7E-25 T 22-04-2016 IPR008972 Cupredoxin PP4_RS13455 65e051bf669af9569e82f2bd39b13cd5 271 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 7 214 2.3E-30 T 22-04-2016 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 PP4_RS13455 65e051bf669af9569e82f2bd39b13cd5 271 PIRSF PIRSF015582 1 271 1.0E-74 T 22-04-2016 IPR011206 Citrate lyase beta subunit-like PP4_RS13455 65e051bf669af9569e82f2bd39b13cd5 271 PANTHER PTHR32308 3 267 6.7E-76 T 22-04-2016 IPR011206 Citrate lyase beta subunit-like PP4_RS13455 65e051bf669af9569e82f2bd39b13cd5 271 Gene3D G3DSA:3.20.20.60 3 226 4.1E-67 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PP4_RS13455 65e051bf669af9569e82f2bd39b13cd5 271 SUPERFAMILY SSF51621 3 226 7.33E-57 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PP4_RS13455 65e051bf669af9569e82f2bd39b13cd5 271 PANTHER PTHR32308:SF0 3 267 6.7E-76 T 22-04-2016 PP4_RS16445 80e8069ab3d2a713acc2b634a2942a34 499 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 347 367 - T 22-04-2016 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 PP4_RS16445 80e8069ab3d2a713acc2b634a2942a34 499 TIGRFAM TIGR03173 pbuX: xanthine permease 22 432 1.1E-151 T 22-04-2016 IPR017588 Uric acid permease UacT-like GO:0006810|GO:0016021 PP4_RS16445 80e8069ab3d2a713acc2b634a2942a34 499 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 19 430 2.2E-102 T 22-04-2016 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 PP4_RS16445 80e8069ab3d2a713acc2b634a2942a34 499 Pfam PF00860 Permease family 20 398 3.2E-93 T 22-04-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 PP4_RS16445 80e8069ab3d2a713acc2b634a2942a34 499 PANTHER PTHR11119 11 432 2.7E-107 T 22-04-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 PP4_RS04670 775d81ee9c519384afd25c1f4736428e 373 Pfam PF13439 Glycosyltransferase Family 4 18 179 2.2E-22 T 22-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain PP4_RS04670 775d81ee9c519384afd25c1f4736428e 373 Pfam PF13692 Glycosyl transferases group 1 202 327 3.0E-19 T 22-04-2016 PP4_RS04670 775d81ee9c519384afd25c1f4736428e 373 PANTHER PTHR12526 70 368 3.0E-50 T 22-04-2016 PP4_RS04670 775d81ee9c519384afd25c1f4736428e 373 Gene3D G3DSA:3.40.50.2000 169 328 9.1E-22 T 22-04-2016 PP4_RS04670 775d81ee9c519384afd25c1f4736428e 373 SUPERFAMILY SSF53756 7 364 1.22E-65 T 22-04-2016 PP4_RS14375 0edac9189fa938e7abd94da692baf65d 523 PANTHER PTHR22777:SF14 1 514 1.8E-273 T 22-04-2016 PP4_RS14375 0edac9189fa938e7abd94da692baf65d 523 PANTHER PTHR22777 1 514 1.8E-273 T 22-04-2016 PP4_RS14375 0edac9189fa938e7abd94da692baf65d 523 SUPERFAMILY SSF54631 293 429 8.14E-21 T 22-04-2016 PP4_RS14375 0edac9189fa938e7abd94da692baf65d 523 Gene3D G3DSA:3.30.465.10 417 513 2.0E-21 T 22-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 PP4_RS14375 0edac9189fa938e7abd94da692baf65d 523 Pfam PF03471 Transporter associated domain 439 514 2.9E-17 T 22-04-2016 IPR005170 Transporter-associated domain PP4_RS14375 0edac9189fa938e7abd94da692baf65d 523 Pfam PF03741 Integral membrane protein TerC family 14 203 4.5E-46 T 22-04-2016 IPR005496 Integral membrane protein TerC GO:0016021 PP4_RS14375 0edac9189fa938e7abd94da692baf65d 523 SUPERFAMILY SSF56176 439 518 5.45E-17 T 22-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 PP4_RS14375 0edac9189fa938e7abd94da692baf65d 523 Gene3D G3DSA:3.10.580.10 290 416 1.4E-11 T 22-04-2016 PP4_RS14375 0edac9189fa938e7abd94da692baf65d 523 Pfam PF00571 CBS domain 372 423 5.0E-5 T 22-04-2016 IPR000644 CBS domain PP4_RS14375 0edac9189fa938e7abd94da692baf65d 523 SMART SM01091 437 516 5.9E-22 T 22-04-2016 IPR005170 Transporter-associated domain PP4_RS21325 d127dc497208fe1ace11d113a8e05331 180 PIRSF PIRSF011484 1 177 1.5E-53 T 22-04-2016 IPR009822 YaeQ PP4_RS21325 d127dc497208fe1ace11d113a8e05331 180 PANTHER PTHR38784 1 180 3.0E-84 T 22-04-2016 PP4_RS21325 d127dc497208fe1ace11d113a8e05331 180 PANTHER PTHR38784:SF1 1 180 3.0E-84 T 22-04-2016 PP4_RS21325 d127dc497208fe1ace11d113a8e05331 180 SUPERFAMILY SSF52980 2 177 5.09E-63 T 22-04-2016 IPR011335 Restriction endonuclease type II-like PP4_RS21325 d127dc497208fe1ace11d113a8e05331 180 Pfam PF07152 YaeQ protein 1 171 3.2E-63 T 22-04-2016 IPR009822 YaeQ PP4_RS21325 d127dc497208fe1ace11d113a8e05331 180 Gene3D G3DSA:3.10.640.10 1 176 9.1E-69 T 22-04-2016 PP4_RS21325 d127dc497208fe1ace11d113a8e05331 180 SMART SM01322 1 174 6.5E-96 T 22-04-2016 IPR009822 YaeQ PP4_RS01820 0f4edad52e04c3a725197317cc9ed574 449 PANTHER PTHR11785:SF346 6 447 3.7E-217 T 22-04-2016 PP4_RS01820 0f4edad52e04c3a725197317cc9ed574 449 PIRSF PIRSF006060 2 444 1.1E-62 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS01820 0f4edad52e04c3a725197317cc9ed574 449 Pfam PF13520 Amino acid permease 24 419 1.3E-36 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS01820 0f4edad52e04c3a725197317cc9ed574 449 PANTHER PTHR11785 6 447 3.7E-217 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS14400 5fa8a5aa171e9e98f699380b4cbb01b6 539 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 311 322 - T 22-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 PP4_RS14400 5fa8a5aa171e9e98f699380b4cbb01b6 539 Gene3D G3DSA:3.40.309.10 298 483 2.5E-47 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PP4_RS14400 5fa8a5aa171e9e98f699380b4cbb01b6 539 PANTHER PTHR11699 7 539 0.0 T 22-04-2016 PP4_RS14400 5fa8a5aa171e9e98f699380b4cbb01b6 539 PANTHER PTHR11699:SF69 7 539 0.0 T 22-04-2016 PP4_RS14400 5fa8a5aa171e9e98f699380b4cbb01b6 539 SUPERFAMILY SSF53720 17 510 1.02E-104 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS14400 5fa8a5aa171e9e98f699380b4cbb01b6 539 Gene3D G3DSA:3.40.605.10 29 297 6.6E-54 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS14400 5fa8a5aa171e9e98f699380b4cbb01b6 539 Pfam PF00171 Aldehyde dehydrogenase family 61 503 7.9E-95 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PP4_RS26425 35814bbb34e7a7fd6be8c9fe36b954f7 1021 SUPERFAMILY SSF82866 789 1012 2.88E-45 T 22-04-2016 PP4_RS26425 35814bbb34e7a7fd6be8c9fe36b954f7 1021 SUPERFAMILY SSF82693 553 643 8.63E-8 T 22-04-2016 PP4_RS26425 35814bbb34e7a7fd6be8c9fe36b954f7 1021 PANTHER PTHR32063:SF7 5 1015 0.0 T 22-04-2016 PP4_RS26425 35814bbb34e7a7fd6be8c9fe36b954f7 1021 Pfam PF00873 AcrB/AcrD/AcrF family 8 1005 1.3E-160 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS26425 35814bbb34e7a7fd6be8c9fe36b954f7 1021 PANTHER PTHR32063 5 1015 0.0 T 22-04-2016 PP4_RS26425 35814bbb34e7a7fd6be8c9fe36b954f7 1021 Gene3D G3DSA:3.30.70.1430 44 142 1.2E-21 T 22-04-2016 PP4_RS26425 35814bbb34e7a7fd6be8c9fe36b954f7 1021 SUPERFAMILY SSF82693 44 139 4.01E-18 T 22-04-2016 PP4_RS26425 35814bbb34e7a7fd6be8c9fe36b954f7 1021 SUPERFAMILY SSF82714 706 790 1.44E-16 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS26425 35814bbb34e7a7fd6be8c9fe36b954f7 1021 Gene3D G3DSA:3.30.70.1430 557 642 1.4E-6 T 22-04-2016 PP4_RS26425 35814bbb34e7a7fd6be8c9fe36b954f7 1021 SUPERFAMILY SSF82693 272 328 2.27E-16 T 22-04-2016 PP4_RS26425 35814bbb34e7a7fd6be8c9fe36b954f7 1021 Gene3D G3DSA:1.10.3850.10 277 494 6.7E-38 T 22-04-2016 PP4_RS26425 35814bbb34e7a7fd6be8c9fe36b954f7 1021 Gene3D G3DSA:1.10.3850.10 797 1009 9.8E-49 T 22-04-2016 PP4_RS26425 35814bbb34e7a7fd6be8c9fe36b954f7 1021 SUPERFAMILY SSF82866 301 492 3.53E-32 T 22-04-2016 PP4_RS26425 35814bbb34e7a7fd6be8c9fe36b954f7 1021 SUPERFAMILY SSF82714 189 269 4.19E-12 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS26425 35814bbb34e7a7fd6be8c9fe36b954f7 1021 Gene3D G3DSA:3.30.2090.10 706 790 1.8E-15 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS26425 35814bbb34e7a7fd6be8c9fe36b954f7 1021 Gene3D G3DSA:3.30.2090.10 190 269 4.4E-12 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS26425 35814bbb34e7a7fd6be8c9fe36b954f7 1021 PRINTS PR00702 Acriflavin resistance protein family signature 14 38 3.6E-19 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS26425 35814bbb34e7a7fd6be8c9fe36b954f7 1021 PRINTS PR00702 Acriflavin resistance protein family signature 441 464 3.6E-19 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS26425 35814bbb34e7a7fd6be8c9fe36b954f7 1021 PRINTS PR00702 Acriflavin resistance protein family signature 360 381 3.6E-19 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS26425 35814bbb34e7a7fd6be8c9fe36b954f7 1021 PRINTS PR00702 Acriflavin resistance protein family signature 42 60 3.6E-19 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS26425 35814bbb34e7a7fd6be8c9fe36b954f7 1021 PRINTS PR00702 Acriflavin resistance protein family signature 388 412 3.6E-19 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS26425 35814bbb34e7a7fd6be8c9fe36b954f7 1021 PRINTS PR00702 Acriflavin resistance protein family signature 466 489 3.6E-19 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS26425 35814bbb34e7a7fd6be8c9fe36b954f7 1021 SUPERFAMILY SSF82693 141 186 2.27E-16 T 22-04-2016 PP4_RS17860 f84fb24d8947cf94419167004c8b238a 355 Pfam PF05853 beta-keto acid cleavage enzyme 15 318 3.8E-68 T 22-04-2016 IPR008567 3-keto-5-aminohexanoate cleavage enzyme GO:0016740|GO:0019475 KEGG: 00600+2.3.1.24|UniPathway: UPA00870 PP4_RS17860 f84fb24d8947cf94419167004c8b238a 355 PANTHER PTHR37418:SF2 13 141 3.8E-26 T 22-04-2016 PP4_RS17860 f84fb24d8947cf94419167004c8b238a 355 PANTHER PTHR37418:SF2 163 323 3.8E-26 T 22-04-2016 PP4_RS17860 f84fb24d8947cf94419167004c8b238a 355 Gene3D G3DSA:3.20.20.70 14 321 2.4E-84 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS17860 f84fb24d8947cf94419167004c8b238a 355 PANTHER PTHR37418 13 141 3.8E-26 T 22-04-2016 PP4_RS17860 f84fb24d8947cf94419167004c8b238a 355 PANTHER PTHR37418 163 323 3.8E-26 T 22-04-2016 PP4_RS25685 fdba10710f0b00f3330273078b05bebe 267 Pfam PF05013 N-formylglutamate amidohydrolase 13 230 1.1E-68 T 22-04-2016 IPR007709 N-formylglutamate amidohydrolase PP4_RS25685 fdba10710f0b00f3330273078b05bebe 267 SUPERFAMILY SSF53187 5 262 2.35E-82 T 22-04-2016 PP4_RS25685 fdba10710f0b00f3330273078b05bebe 267 Gene3D G3DSA:3.40.630.40 4 263 1.6E-92 T 22-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 PP4_RS25685 fdba10710f0b00f3330273078b05bebe 267 TIGRFAM TIGR02017 hutG_amidohyd: N-formylglutamate deformylase 4 262 3.0E-129 T 22-04-2016 IPR010247 N-formylglutamate deformylase PP4_RS25180 43b09d610f83a927b734fcc3ab60b9e0 270 PANTHER PTHR11732:SF14 10 263 3.7E-52 T 22-04-2016 PP4_RS25180 43b09d610f83a927b734fcc3ab60b9e0 270 PANTHER PTHR11732 10 263 3.7E-52 T 22-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta PP4_RS25180 43b09d610f83a927b734fcc3ab60b9e0 270 Gene3D G3DSA:3.20.20.100 11 263 6.1E-43 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain PP4_RS25180 43b09d610f83a927b734fcc3ab60b9e0 270 Pfam PF00248 Aldo/keto reductase family 22 219 2.2E-31 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain PP4_RS25180 43b09d610f83a927b734fcc3ab60b9e0 270 SUPERFAMILY SSF51430 11 263 2.1E-50 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain PP4_RS26530 5b7108457b9d6d960e8c95121cac5ad1 127 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 3 125 5.1E-45 T 22-04-2016 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 PP4_RS26530 5b7108457b9d6d960e8c95121cac5ad1 127 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 49 78 - T 22-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site PP4_RS26530 5b7108457b9d6d960e8c95121cac5ad1 127 SUPERFAMILY SSF51230 3 126 3.66E-41 T 22-04-2016 IPR011053 Single hybrid motif PP4_RS26530 5b7108457b9d6d960e8c95121cac5ad1 127 PANTHER PTHR11715 1 127 3.1E-63 T 22-04-2016 IPR002930 Glycine cleavage system H-protein PP4_RS26530 5b7108457b9d6d960e8c95121cac5ad1 127 Gene3D G3DSA:2.40.50.100 7 126 2.9E-47 T 22-04-2016 PP4_RS26530 5b7108457b9d6d960e8c95121cac5ad1 127 Pfam PF01597 Glycine cleavage H-protein 8 124 5.5E-42 T 22-04-2016 IPR002930 Glycine cleavage system H-protein PP4_RS26530 5b7108457b9d6d960e8c95121cac5ad1 127 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 5 126 30.434 T 22-04-2016 IPR002930 Glycine cleavage system H-protein PP4_RS18110 0d84ac0707976bcfb6a7c236bdbf3daa 257 PANTHER PTHR11941 1 254 1.2E-120 T 22-04-2016 PP4_RS18110 0d84ac0707976bcfb6a7c236bdbf3daa 257 ProSitePatterns PS00166 Enoyl-CoA hydratase/isomerase signature. 98 118 - T 22-04-2016 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site GO:0003824|GO:0008152 PP4_RS18110 0d84ac0707976bcfb6a7c236bdbf3daa 257 Pfam PF00378 Enoyl-CoA hydratase/isomerase 11 256 8.4E-83 T 22-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 PP4_RS18110 0d84ac0707976bcfb6a7c236bdbf3daa 257 Gene3D G3DSA:3.90.226.10 1 255 2.6E-98 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS18110 0d84ac0707976bcfb6a7c236bdbf3daa 257 SUPERFAMILY SSF52096 2 257 9.05E-91 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS18110 0d84ac0707976bcfb6a7c236bdbf3daa 257 PANTHER PTHR11941:SF54 1 254 1.2E-120 T 22-04-2016 PP4_RS15810 a73cd8c0cec09b838b608fb1b4d59b18 328 SUPERFAMILY SSF51556 6 245 1.41E-84 T 22-04-2016 IPR032466 Metal-dependent hydrolase PP4_RS15810 a73cd8c0cec09b838b608fb1b4d59b18 328 SUPERFAMILY SSF51556 276 324 1.41E-84 T 22-04-2016 IPR032466 Metal-dependent hydrolase PP4_RS15810 a73cd8c0cec09b838b608fb1b4d59b18 328 Pfam PF01244 Membrane dipeptidase (Peptidase family M19) 15 321 6.2E-88 T 22-04-2016 IPR008257 Renal dipeptidase family GO:0006508|GO:0016805 MetaCyc: PWY-7533 PP4_RS15810 a73cd8c0cec09b838b608fb1b4d59b18 328 PANTHER PTHR10443 276 320 6.7E-63 T 22-04-2016 IPR008257 Renal dipeptidase family GO:0006508|GO:0016805 MetaCyc: PWY-7533 PP4_RS15810 a73cd8c0cec09b838b608fb1b4d59b18 328 PANTHER PTHR10443 1 246 6.7E-63 T 22-04-2016 IPR008257 Renal dipeptidase family GO:0006508|GO:0016805 MetaCyc: PWY-7533 PP4_RS15810 a73cd8c0cec09b838b608fb1b4d59b18 328 Gene3D G3DSA:3.20.20.140 2 323 7.1E-84 T 22-04-2016 PP4_RS15810 a73cd8c0cec09b838b608fb1b4d59b18 328 PANTHER PTHR10443:SF24 276 320 6.7E-63 T 22-04-2016 PP4_RS15810 a73cd8c0cec09b838b608fb1b4d59b18 328 PANTHER PTHR10443:SF24 1 246 6.7E-63 T 22-04-2016 PP4_RS02670 2bf0da2e8d11b1f4b4d0f34b60be6948 341 SUPERFAMILY SSF51197 77 335 3.53E-39 T 22-04-2016 PP4_RS02670 2bf0da2e8d11b1f4b4d0f34b60be6948 341 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 262 319 4.0E-8 T 22-04-2016 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: REACT_13 PP4_RS02670 2bf0da2e8d11b1f4b4d0f34b60be6948 341 PIRSF PIRSF019543 6 340 9.3E-38 T 22-04-2016 IPR014503 Clavaminate synthase GO:0005506|GO:0017000|GO:0033758|GO:0055114 PP4_RS02670 2bf0da2e8d11b1f4b4d0f34b60be6948 341 Gene3D G3DSA:3.60.130.10 6 325 1.0E-40 T 22-04-2016 PP4_RS07830 2c12db324dcd79c06b2b8e61295d3d1d 323 Pfam PF02625 XdhC and CoxI family 18 67 3.3E-15 T 22-04-2016 IPR003777 XdhC- CoxI PP4_RS07830 2c12db324dcd79c06b2b8e61295d3d1d 323 PANTHER PTHR30388:SF4 5 317 1.4E-90 T 22-04-2016 PP4_RS07830 2c12db324dcd79c06b2b8e61295d3d1d 323 Pfam PF13478 XdhC Rossmann domain 169 311 2.6E-32 T 22-04-2016 IPR027051 XdhC Rossmann domain PP4_RS07830 2c12db324dcd79c06b2b8e61295d3d1d 323 PANTHER PTHR30388 5 317 1.4E-90 T 22-04-2016 PP4_RS11145 50481a8a4e61d6be55acf4368f1676e8 293 Pfam PF03466 LysR substrate binding domain 90 281 9.0E-35 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS11145 50481a8a4e61d6be55acf4368f1676e8 293 SUPERFAMILY SSF46785 4 114 1.63E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS11145 50481a8a4e61d6be55acf4368f1676e8 293 SUPERFAMILY SSF53850 91 282 7.25E-35 T 22-04-2016 PP4_RS11145 50481a8a4e61d6be55acf4368f1676e8 293 PANTHER PTHR30126 4 254 8.8E-57 T 22-04-2016 PP4_RS11145 50481a8a4e61d6be55acf4368f1676e8 293 Gene3D G3DSA:3.40.190.10 91 192 5.5E-22 T 22-04-2016 PP4_RS11145 50481a8a4e61d6be55acf4368f1676e8 293 Gene3D G3DSA:3.40.190.10 193 262 3.9E-12 T 22-04-2016 PP4_RS11145 50481a8a4e61d6be55acf4368f1676e8 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 2.0E-18 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS11145 50481a8a4e61d6be55acf4368f1676e8 293 PANTHER PTHR30126:SF11 4 254 8.8E-57 T 22-04-2016 PP4_RS11145 50481a8a4e61d6be55acf4368f1676e8 293 Gene3D G3DSA:1.10.10.10 4 87 1.3E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS22235 f8091f4ede4b0f470e1b4e527fe9313e 382 Gene3D G3DSA:3.40.640.10 39 249 5.7E-73 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS22235 f8091f4ede4b0f470e1b4e527fe9313e 382 Gene3D G3DSA:3.90.1150.10 250 380 1.1E-22 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS22235 f8091f4ede4b0f470e1b4e527fe9313e 382 PANTHER PTHR11751:SF301 5 382 6.0E-144 T 22-04-2016 PP4_RS22235 f8091f4ede4b0f470e1b4e527fe9313e 382 Pfam PF00155 Aminotransferase class I and II 27 379 1.3E-60 T 22-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PP4_RS22235 f8091f4ede4b0f470e1b4e527fe9313e 382 PANTHER PTHR11751 5 382 6.0E-144 T 22-04-2016 PP4_RS22235 f8091f4ede4b0f470e1b4e527fe9313e 382 SUPERFAMILY SSF53383 2 380 1.88E-102 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS09020 794de8a73ef17cb4dd7f0eb20af0f398 212 Gene3D G3DSA:1.10.10.60 9 65 1.9E-17 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS09020 794de8a73ef17cb4dd7f0eb20af0f398 212 PANTHER PTHR30328 9 212 5.6E-46 T 22-04-2016 PP4_RS09020 794de8a73ef17cb4dd7f0eb20af0f398 212 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 65 1.8E-10 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS09020 794de8a73ef17cb4dd7f0eb20af0f398 212 SUPERFAMILY SSF48498 87 211 7.51E-35 T 22-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal PP4_RS09020 794de8a73ef17cb4dd7f0eb20af0f398 212 PANTHER PTHR30328:SF16 9 212 5.6E-46 T 22-04-2016 PP4_RS09020 794de8a73ef17cb4dd7f0eb20af0f398 212 Gene3D G3DSA:1.10.357.10 67 202 9.7E-32 T 22-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PP4_RS09020 794de8a73ef17cb4dd7f0eb20af0f398 212 SUPERFAMILY SSF46689 9 91 1.59E-16 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS09020 794de8a73ef17cb4dd7f0eb20af0f398 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 2.5E-6 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS09020 794de8a73ef17cb4dd7f0eb20af0f398 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 2.5E-6 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS25310 5ba324d8f35a5e3df566051cc2e0f0d9 150 PANTHER PTHR23091:SF275 12 148 1.9E-32 T 22-04-2016 PP4_RS25310 5ba324d8f35a5e3df566051cc2e0f0d9 150 Gene3D G3DSA:3.40.630.30 3 149 1.0E-41 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS25310 5ba324d8f35a5e3df566051cc2e0f0d9 150 PANTHER PTHR23091 12 148 1.9E-32 T 22-04-2016 PP4_RS25310 5ba324d8f35a5e3df566051cc2e0f0d9 150 Pfam PF13673 Acetyltransferase (GNAT) domain 45 149 3.4E-11 T 22-04-2016 IPR000182 GNAT domain GO:0008080 PP4_RS25310 5ba324d8f35a5e3df566051cc2e0f0d9 150 SUPERFAMILY SSF55729 3 149 2.24E-28 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS02900 036e9ad13b16157cd0b20975bc1f3fc1 80 PIRSF PIRSF006488 1 80 2.2E-22 T 22-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 PP4_RS02900 036e9ad13b16157cd0b20975bc1f3fc1 80 Pfam PF02609 Exonuclease VII small subunit 10 61 4.6E-20 T 22-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 PP4_RS02900 036e9ad13b16157cd0b20975bc1f3fc1 80 PANTHER PTHR34137 1 79 6.1E-24 T 22-04-2016 PP4_RS02900 036e9ad13b16157cd0b20975bc1f3fc1 80 SUPERFAMILY SSF116842 3 69 5.89E-21 T 22-04-2016 PP4_RS02900 036e9ad13b16157cd0b20975bc1f3fc1 80 ProDom PD028235 EXONUCLEASE SMALL SUBUNIT VII EXODEOXYRIBONUCLEASE HYDROLASE NUCLEASE PROBABLE VII SIMILAR 1 49 2.0E-8 T 22-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 PP4_RS02900 036e9ad13b16157cd0b20975bc1f3fc1 80 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 9 69 15.512 T 22-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 PP4_RS02900 036e9ad13b16157cd0b20975bc1f3fc1 80 Gene3D G3DSA:1.10.287.1040 4 75 9.1E-28 T 22-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 PP4_RS02900 036e9ad13b16157cd0b20975bc1f3fc1 80 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 9 64 5.3E-22 T 22-04-2016 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 PP4_RS24235 aa81c3b7c2260bcf634cd34240664686 393 SUPERFAMILY SSF51395 5 372 2.32E-92 T 22-04-2016 PP4_RS24235 aa81c3b7c2260bcf634cd34240664686 393 PANTHER PTHR10578 8 373 2.3E-142 T 22-04-2016 PP4_RS24235 aa81c3b7c2260bcf634cd34240664686 393 PANTHER PTHR10578:SF76 8 373 2.3E-142 T 22-04-2016 PP4_RS24235 aa81c3b7c2260bcf634cd34240664686 393 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 272 278 - T 22-04-2016 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 PP4_RS24235 aa81c3b7c2260bcf634cd34240664686 393 Gene3D G3DSA:3.20.20.70 5 376 4.5E-119 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS24235 aa81c3b7c2260bcf634cd34240664686 393 Pfam PF01070 FMN-dependent dehydrogenase 15 373 2.1E-121 T 22-04-2016 IPR000262 FMN-dependent dehydrogenase GO:0016491 PP4_RS24235 aa81c3b7c2260bcf634cd34240664686 393 PIRSF PIRSF000138 1 377 1.2E-132 T 22-04-2016 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 PP4_RS12790 97abb53e47bb6462b3fa7365304a7f32 173 Gene3D G3DSA:2.40.160.20 27 171 1.0E-47 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 PP4_RS12790 97abb53e47bb6462b3fa7365304a7f32 173 Pfam PF09411 Lipid A 3-O-deacylase (PagL) 40 170 1.7E-23 T 22-04-2016 IPR018550 Lipid A 3-O-deacylase-related PP4_RS12790 97abb53e47bb6462b3fa7365304a7f32 173 PIRSF PIRSF029681 1 173 1.6E-45 T 22-04-2016 IPR018550 Lipid A 3-O-deacylase-related PP4_RS14320 7b27eda326c0c20d9160372a7daf8a4c 413 SUPERFAMILY SSF111369 52 291 1.83E-69 T 22-04-2016 PP4_RS14320 7b27eda326c0c20d9160372a7daf8a4c 413 Gene3D G3DSA:2.40.50.100 62 96 6.6E-24 T 22-04-2016 PP4_RS14320 7b27eda326c0c20d9160372a7daf8a4c 413 Gene3D G3DSA:2.40.50.100 171 203 6.6E-24 T 22-04-2016 PP4_RS14320 7b27eda326c0c20d9160372a7daf8a4c 413 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 62 287 2.0E-16 T 22-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PP4_RS14320 7b27eda326c0c20d9160372a7daf8a4c 413 PANTHER PTHR30158 1 392 3.6E-183 T 22-04-2016 PP4_RS14320 7b27eda326c0c20d9160372a7daf8a4c 413 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 38 368 1.4E-81 T 22-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 PP4_RS14320 7b27eda326c0c20d9160372a7daf8a4c 413 PANTHER PTHR30158:SF2 1 392 3.6E-183 T 22-04-2016 PP4_RS20995 b0f231dc9d27e0d81386f387ca4442ff 351 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 10 327 36.148 T 22-04-2016 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 UniPathway: UPA00973 PP4_RS20995 b0f231dc9d27e0d81386f387ca4442ff 351 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 260 287 0.16 T 22-04-2016 IPR001451 Hexapeptide repeat PP4_RS20995 b0f231dc9d27e0d81386f387ca4442ff 351 Gene3D G3DSA:2.160.10.10 212 334 2.3E-21 T 22-04-2016 PP4_RS20995 b0f231dc9d27e0d81386f387ca4442ff 351 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 107 135 - T 22-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 PP4_RS20995 b0f231dc9d27e0d81386f387ca4442ff 351 PANTHER PTHR22572 100 296 4.3E-54 T 22-04-2016 PP4_RS20995 b0f231dc9d27e0d81386f387ca4442ff 351 PANTHER PTHR22572:SF117 100 296 4.3E-54 T 22-04-2016 PP4_RS20995 b0f231dc9d27e0d81386f387ca4442ff 351 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 24 90 6.3E-24 T 22-04-2016 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 UniPathway: UPA00973 PP4_RS20995 b0f231dc9d27e0d81386f387ca4442ff 351 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 9 330 1.1E-114 T 22-04-2016 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 UniPathway: UPA00973 PP4_RS20995 b0f231dc9d27e0d81386f387ca4442ff 351 SUPERFAMILY SSF51161 33 318 6.21E-81 T 22-04-2016 IPR011004 Trimeric LpxA-like PP4_RS20995 b0f231dc9d27e0d81386f387ca4442ff 351 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 147 181 1.6E-6 T 22-04-2016 IPR001451 Hexapeptide repeat PP4_RS20995 b0f231dc9d27e0d81386f387ca4442ff 351 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 116 144 7.7E-6 T 22-04-2016 IPR001451 Hexapeptide repeat PP4_RS20995 b0f231dc9d27e0d81386f387ca4442ff 351 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 223 258 1.8E-6 T 22-04-2016 IPR001451 Hexapeptide repeat PP4_RS20995 b0f231dc9d27e0d81386f387ca4442ff 351 Gene3D G3DSA:2.160.10.10 109 211 6.2E-24 T 22-04-2016 PP4_RS21930 fd51ef4e1d347b16171e0b4cf61a3a7c 241 Gene3D G3DSA:3.40.50.300 3 234 2.5E-67 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS21930 fd51ef4e1d347b16171e0b4cf61a3a7c 241 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 3 241 1.4E-122 T 22-04-2016 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 PP4_RS21930 fd51ef4e1d347b16171e0b4cf61a3a7c 241 PANTHER PTHR24220 5 238 9.4E-145 T 22-04-2016 PP4_RS21930 fd51ef4e1d347b16171e0b4cf61a3a7c 241 Pfam PF00005 ABC transporter 20 166 4.3E-34 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS21930 fd51ef4e1d347b16171e0b4cf61a3a7c 241 PANTHER PTHR24220:SF497 5 238 9.4E-145 T 22-04-2016 PP4_RS21930 fd51ef4e1d347b16171e0b4cf61a3a7c 241 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS21930 fd51ef4e1d347b16171e0b4cf61a3a7c 241 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 214 236 2.2E-5 T 22-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal PP4_RS21930 fd51ef4e1d347b16171e0b4cf61a3a7c 241 SUPERFAMILY SSF52540 4 235 1.7E-62 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS21930 fd51ef4e1d347b16171e0b4cf61a3a7c 241 SMART SM00382 28 229 6.1E-9 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS12280 6d5b8fcce299192898b52da86a5a8046 159 SUPERFAMILY SSF49772 26 157 4.71E-56 T 22-04-2016 IPR023189 Proteinase inhibitor I11, ecotin domain PP4_RS12280 6d5b8fcce299192898b52da86a5a8046 159 PIRSF PIRSF006865 1 159 4.1E-66 T 22-04-2016 IPR005658 Proteinase inhibitor I11, ecotin PP4_RS12280 6d5b8fcce299192898b52da86a5a8046 159 Hamap MF_00706 Ecotin [eco]. 1 159 41.661 T 22-04-2016 IPR023084 Proteinase inhibitor I11, ecotin, gammaproteobacteria PP4_RS12280 6d5b8fcce299192898b52da86a5a8046 159 PANTHER PTHR35890 1 159 4.8E-85 T 22-04-2016 PP4_RS12280 6d5b8fcce299192898b52da86a5a8046 159 Pfam PF03974 Ecotin 28 149 9.6E-53 T 22-04-2016 IPR023189 Proteinase inhibitor I11, ecotin domain PP4_RS12280 6d5b8fcce299192898b52da86a5a8046 159 Gene3D G3DSA:4.10.1230.10 103 158 3.8E-29 T 22-04-2016 IPR027438 Ecotin, C-terminal PP4_RS12280 6d5b8fcce299192898b52da86a5a8046 159 Gene3D G3DSA:2.60.40.550 21 102 1.7E-36 T 22-04-2016 IPR023189 Proteinase inhibitor I11, ecotin domain PP4_RS12280 6d5b8fcce299192898b52da86a5a8046 159 PANTHER PTHR35890:SF4 1 159 4.8E-85 T 22-04-2016 PP4_RS20140 3dc8616d7a6e3f651e24c3d790bbe63f 98 Hamap MF_00381 Integration host factor subunit beta [ihfB]. 1 94 29.037 T 22-04-2016 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 PP4_RS20140 3dc8616d7a6e3f651e24c3d790bbe63f 98 SMART SM00411 1 91 2.9E-43 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PP4_RS20140 3dc8616d7a6e3f651e24c3d790bbe63f 98 Gene3D G3DSA:4.10.520.10 1 92 7.6E-34 T 22-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 PP4_RS20140 3dc8616d7a6e3f651e24c3d790bbe63f 98 PANTHER PTHR33175 1 95 4.5E-49 T 22-04-2016 PP4_RS20140 3dc8616d7a6e3f651e24c3d790bbe63f 98 Pfam PF00216 Bacterial DNA-binding protein 1 91 5.2E-29 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PP4_RS20140 3dc8616d7a6e3f651e24c3d790bbe63f 98 TIGRFAM TIGR00988 hip: integration host factor, beta subunit 1 93 1.2E-51 T 22-04-2016 IPR005685 Integration host factor, beta subunit GO:0003677|GO:0005694|GO:0006310|GO:0006355 PP4_RS20140 3dc8616d7a6e3f651e24c3d790bbe63f 98 SUPERFAMILY SSF47729 1 94 1.62E-30 T 22-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 PP4_RS20140 3dc8616d7a6e3f651e24c3d790bbe63f 98 PRINTS PR01727 Prokaryotic integration host factor signature 59 72 1.7E-18 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PP4_RS20140 3dc8616d7a6e3f651e24c3d790bbe63f 98 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 1.7E-18 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PP4_RS20140 3dc8616d7a6e3f651e24c3d790bbe63f 98 PRINTS PR01727 Prokaryotic integration host factor signature 41 56 1.7E-18 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PP4_RS20140 3dc8616d7a6e3f651e24c3d790bbe63f 98 PANTHER PTHR33175:SF5 1 95 4.5E-49 T 22-04-2016 PP4_RS20140 3dc8616d7a6e3f651e24c3d790bbe63f 98 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 47 66 - T 22-04-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 PP4_RS16670 277bfb84ca40106203a45e3e105570a9 517 Gene3D G3DSA:3.90.76.10 76 203 2.5E-23 T 22-04-2016 PP4_RS16670 277bfb84ca40106203a45e3e105570a9 517 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 8 28 9.6E-4 T 22-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal PP4_RS16670 277bfb84ca40106203a45e3e105570a9 517 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 92 410 6.5E-65 T 22-04-2016 IPR000914 Solute-binding protein family 5 domain PP4_RS16670 277bfb84ca40106203a45e3e105570a9 517 SUPERFAMILY SSF53850 42 515 8.87E-98 T 22-04-2016 PP4_RS16670 277bfb84ca40106203a45e3e105570a9 517 Gene3D G3DSA:3.40.190.10 204 301 1.6E-31 T 22-04-2016 PP4_RS16670 277bfb84ca40106203a45e3e105570a9 517 PANTHER PTHR30290 1 516 3.9E-85 T 22-04-2016 PP4_RS16670 277bfb84ca40106203a45e3e105570a9 517 Gene3D G3DSA:3.10.105.10 302 479 6.7E-34 T 22-04-2016 PP4_RS04200 479d98aac339357709d86223f3e9df68 331 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 308 324 4.8E-5 T 22-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PP4_RS04200 479d98aac339357709d86223f3e9df68 331 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 293 308 4.8E-5 T 22-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PP4_RS04200 479d98aac339357709d86223f3e9df68 331 SUPERFAMILY SSF46689 277 328 8.06E-13 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS04200 479d98aac339357709d86223f3e9df68 331 Pfam PF12833 Helix-turn-helix domain 248 326 1.8E-20 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS04200 479d98aac339357709d86223f3e9df68 331 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 278 320 - T 22-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PP4_RS04200 479d98aac339357709d86223f3e9df68 331 Gene3D G3DSA:3.40.50.880 11 232 3.9E-38 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS04200 479d98aac339357709d86223f3e9df68 331 SUPERFAMILY SSF52317 10 207 1.06E-37 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS04200 479d98aac339357709d86223f3e9df68 331 Gene3D G3DSA:1.10.10.60 278 328 9.2E-17 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS04200 479d98aac339357709d86223f3e9df68 331 PANTHER PTHR11019:SF61 123 331 1.9E-56 T 22-04-2016 PP4_RS04200 479d98aac339357709d86223f3e9df68 331 SMART SM00342 241 324 4.4E-23 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS04200 479d98aac339357709d86223f3e9df68 331 PANTHER PTHR11019 123 331 1.9E-56 T 22-04-2016 PP4_RS04200 479d98aac339357709d86223f3e9df68 331 SUPERFAMILY SSF46689 226 275 5.47E-8 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS04200 479d98aac339357709d86223f3e9df68 331 Pfam PF01965 DJ-1/PfpI family 51 181 5.1E-8 T 22-04-2016 IPR002818 DJ-1/PfpI PP4_RS04200 479d98aac339357709d86223f3e9df68 331 Gene3D G3DSA:1.10.10.60 233 277 4.6E-12 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS01205 a38936810f53f1953438ffbe332c7a5d 394 Pfam PF00487 Fatty acid desaturase 11 236 9.4E-13 T 22-04-2016 IPR005804 Fatty acid desaturase domain GO:0006629 PP4_RS01205 a38936810f53f1953438ffbe332c7a5d 394 PANTHER PTHR11351 1 374 5.3E-200 T 22-04-2016 PP4_RS01205 a38936810f53f1953438ffbe332c7a5d 394 PANTHER PTHR11351:SF33 1 374 5.3E-200 T 22-04-2016 PP4_RS01205 a38936810f53f1953438ffbe332c7a5d 394 Pfam PF01610 Transposase 286 387 2.3E-9 T 22-04-2016 IPR002560 Transposase IS204/IS1001/IS1096/IS1165, DDE domain PP4_RS27120 2b6e0056641dd7feda4b2feed751d533 298 Pfam PF01551 Peptidase family M23 177 271 4.7E-25 T 22-04-2016 IPR016047 Peptidase M23 PP4_RS27120 2b6e0056641dd7feda4b2feed751d533 298 Pfam PF13511 Domain of unknown function (DUF4124) 10 45 4.5E-6 T 22-04-2016 IPR025392 Domain of unknown function DUF4124 PP4_RS27120 2b6e0056641dd7feda4b2feed751d533 298 PANTHER PTHR21666:SF204 129 292 3.7E-34 T 22-04-2016 PP4_RS27120 2b6e0056641dd7feda4b2feed751d533 298 SUPERFAMILY SSF51261 145 271 1.73E-30 T 22-04-2016 IPR011055 Duplicated hybrid motif PP4_RS27120 2b6e0056641dd7feda4b2feed751d533 298 Gene3D G3DSA:2.70.70.10 140 271 6.0E-32 T 22-04-2016 PP4_RS27120 2b6e0056641dd7feda4b2feed751d533 298 PANTHER PTHR21666 129 292 3.7E-34 T 22-04-2016 PP4_RS19235 c5d6bd3f75ac715f7c88df892cc404c6 372 Pfam PF00795 Carbon-nitrogen hydrolase 68 290 2.4E-9 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PP4_RS19235 c5d6bd3f75ac715f7c88df892cc404c6 372 SUPERFAMILY SSF56317 66 110 2.49E-23 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PP4_RS19235 c5d6bd3f75ac715f7c88df892cc404c6 372 SUPERFAMILY SSF56317 150 284 2.49E-23 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PP4_RS19235 c5d6bd3f75ac715f7c88df892cc404c6 372 PANTHER PTHR23088:SF15 39 110 6.8E-49 T 22-04-2016 PP4_RS19235 c5d6bd3f75ac715f7c88df892cc404c6 372 PANTHER PTHR23088:SF15 146 371 6.8E-49 T 22-04-2016 PP4_RS19235 c5d6bd3f75ac715f7c88df892cc404c6 372 PANTHER PTHR23088 39 110 6.8E-49 T 22-04-2016 PP4_RS19235 c5d6bd3f75ac715f7c88df892cc404c6 372 PANTHER PTHR23088 146 371 6.8E-49 T 22-04-2016 PP4_RS19235 c5d6bd3f75ac715f7c88df892cc404c6 372 Gene3D G3DSA:3.60.110.10 149 289 1.2E-25 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PP4_RS19235 c5d6bd3f75ac715f7c88df892cc404c6 372 Gene3D G3DSA:3.60.110.10 66 106 1.2E-25 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PP4_RS10845 c687f1a113849982efaa8ea2192c6e65 399 SUPERFAMILY SSF54675 6 140 2.16E-42 T 22-04-2016 PP4_RS10845 c687f1a113849982efaa8ea2192c6e65 399 Hamap MF_00570 Nicotinate phosphoribosyltransferase [pncB]. 7 399 49.804 T 22-04-2016 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 PP4_RS10845 c687f1a113849982efaa8ea2192c6e65 399 PIRSF PIRSF000484 3 385 6.0E-64 T 22-04-2016 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 PP4_RS10845 c687f1a113849982efaa8ea2192c6e65 399 TIGRFAM TIGR01514 NAPRTase: nicotinate phosphoribosyltransferase 10 398 5.5E-156 T 22-04-2016 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 PP4_RS10845 c687f1a113849982efaa8ea2192c6e65 399 PANTHER PTHR11098 1 399 5.9E-208 T 22-04-2016 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 PP4_RS10845 c687f1a113849982efaa8ea2192c6e65 399 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 172 397 1.1E-83 T 22-04-2016 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 PP4_RS10845 c687f1a113849982efaa8ea2192c6e65 399 SUPERFAMILY SSF51690 123 397 3.92E-90 T 22-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 PP4_RS10845 c687f1a113849982efaa8ea2192c6e65 399 PANTHER PTHR11098:SF16 1 399 5.9E-208 T 22-04-2016 PP4_RS10845 c687f1a113849982efaa8ea2192c6e65 399 Gene3D G3DSA:3.20.140.10 6 381 2.1E-145 T 22-04-2016 PP4_RS03240 495157c4fd67a519b3907dce5eed5ec9 590 Gene3D G3DSA:2.60.40.1250 35 153 1.3E-39 T 22-04-2016 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain PP4_RS03240 495157c4fd67a519b3907dce5eed5ec9 590 Pfam PF13899 Thioredoxin-like 476 557 7.0E-15 T 22-04-2016 PP4_RS03240 495157c4fd67a519b3907dce5eed5ec9 590 PANTHER PTHR32234 1 589 8.6E-177 T 22-04-2016 PP4_RS03240 495157c4fd67a519b3907dce5eed5ec9 590 PANTHER PTHR32234:SF0 1 589 8.6E-177 T 22-04-2016 IPR022910 Thiol:disulphide interchange protein DsbD GO:0047134|GO:0055114 PP4_RS03240 495157c4fd67a519b3907dce5eed5ec9 590 Hamap MF_00399 Thiol:disulfide interchange protein DsbD [dsbD]. 1 585 34.85 T 22-04-2016 IPR022910 Thiol:disulphide interchange protein DsbD GO:0047134|GO:0055114 PP4_RS03240 495157c4fd67a519b3907dce5eed5ec9 590 SUPERFAMILY SSF52833 471 582 9.17E-21 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS03240 495157c4fd67a519b3907dce5eed5ec9 590 SUPERFAMILY SSF74863 37 152 7.06E-37 T 22-04-2016 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain PP4_RS03240 495157c4fd67a519b3907dce5eed5ec9 590 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 176 379 1.6E-13 T 22-04-2016 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 PP4_RS03240 495157c4fd67a519b3907dce5eed5ec9 590 Gene3D G3DSA:3.40.30.10 473 586 2.6E-27 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS03240 495157c4fd67a519b3907dce5eed5ec9 590 Pfam PF11412 Disulphide bond corrector protein DsbC 39 150 7.0E-31 T 22-04-2016 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain PP4_RS10210 bc6e60e41a6e2e933514045441fd745f 444 PANTHER PTHR23024 58 167 6.7E-38 T 22-04-2016 PP4_RS10210 bc6e60e41a6e2e933514045441fd745f 444 Gene3D G3DSA:3.50.50.60 218 248 3.3E-10 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS10210 bc6e60e41a6e2e933514045441fd745f 444 Gene3D G3DSA:3.50.50.60 300 355 3.3E-10 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS10210 bc6e60e41a6e2e933514045441fd745f 444 Gene3D G3DSA:3.50.50.60 95 217 6.9E-10 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS10210 bc6e60e41a6e2e933514045441fd745f 444 Pfam PF13434 L-lysine 6-monooxygenase (NADPH-requiring) 10 358 1.1E-122 T 22-04-2016 IPR025700 L-lysine 6-monooxygenase/L-ornithine 5-monooxygenase PP4_RS10210 bc6e60e41a6e2e933514045441fd745f 444 SUPERFAMILY SSF51905 7 255 6.92E-17 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS10210 bc6e60e41a6e2e933514045441fd745f 444 PANTHER PTHR23024:SF214 58 167 6.7E-38 T 22-04-2016 PP4_RS10210 bc6e60e41a6e2e933514045441fd745f 444 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 13 32 8.7E-5 T 22-04-2016 PP4_RS10210 bc6e60e41a6e2e933514045441fd745f 444 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 210 228 8.7E-5 T 22-04-2016 PP4_RS10210 bc6e60e41a6e2e933514045441fd745f 444 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 162 180 8.7E-5 T 22-04-2016 PP4_RS10210 bc6e60e41a6e2e933514045441fd745f 444 SUPERFAMILY SSF51905 208 382 2.59E-7 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS25860 d78611bfe4d303035597c62e7aec5cf7 486 PANTHER PTHR32057 3 486 6.8E-201 T 22-04-2016 PP4_RS25860 d78611bfe4d303035597c62e7aec5cf7 486 Hamap MF_00692 UPF0061 protein YdiU [ydiU]. 5 472 47.934 T 22-04-2016 IPR003846 Uncharacterised protein family UPF0061 PP4_RS25860 d78611bfe4d303035597c62e7aec5cf7 486 Pfam PF02696 Uncharacterized ACR, YdiU/UPF0061 family 6 456 1.0E-151 T 22-04-2016 IPR003846 Uncharacterised protein family UPF0061 PP4_RS03760 d1cecba0281f0f76140627b1b85b5c9a 128 PANTHER PTHR33931 1 127 3.9E-51 T 22-04-2016 PP4_RS03760 d1cecba0281f0f76140627b1b85b5c9a 128 PANTHER PTHR33931:SF3 1 127 3.9E-51 T 22-04-2016 PP4_RS03760 d1cecba0281f0f76140627b1b85b5c9a 128 Pfam PF03788 LrgA family 24 116 1.4E-24 T 22-04-2016 IPR005538 LrgA/CidA family GO:0016021 PP4_RS18340 7dd6fb2bbe655484d58c430cd61212de 448 SUPERFAMILY SSF55931 119 448 6.18E-87 T 22-04-2016 PP4_RS18340 7dd6fb2bbe655484d58c430cd61212de 448 Pfam PF00120 Glutamine synthetase, catalytic domain 121 446 1.2E-81 T 22-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS18340 7dd6fb2bbe655484d58c430cd61212de 448 PANTHER PTHR20852:SF7 11 448 1.5E-84 T 22-04-2016 PP4_RS18340 7dd6fb2bbe655484d58c430cd61212de 448 PANTHER PTHR20852 11 448 1.5E-84 T 22-04-2016 PP4_RS18340 7dd6fb2bbe655484d58c430cd61212de 448 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 255 270 - T 22-04-2016 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS18340 7dd6fb2bbe655484d58c430cd61212de 448 SMART SM01230 119 371 1.2E-83 T 22-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS18340 7dd6fb2bbe655484d58c430cd61212de 448 Gene3D G3DSA:3.30.590.10 122 438 2.8E-77 T 22-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 PP4_RS12795 f690035378b1547b50ead9c814e83687 296 Gene3D G3DSA:3.40.50.620 149 293 6.6E-20 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS12795 f690035378b1547b50ead9c814e83687 296 SUPERFAMILY SSF52402 149 293 8.37E-19 T 22-04-2016 PP4_RS12795 f690035378b1547b50ead9c814e83687 296 Pfam PF00582 Universal stress protein family 14 140 3.6E-5 T 22-04-2016 IPR006016 UspA GO:0006950 PP4_RS12795 f690035378b1547b50ead9c814e83687 296 Pfam PF00582 Universal stress protein family 165 293 2.9E-13 T 22-04-2016 IPR006016 UspA GO:0006950 PP4_RS12795 f690035378b1547b50ead9c814e83687 296 Gene3D G3DSA:3.40.50.620 1 140 3.3E-10 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS12795 f690035378b1547b50ead9c814e83687 296 SUPERFAMILY SSF52402 4 140 2.34E-13 T 22-04-2016 PP4_RS11470 32e0e9addc431b77c0229d2b71e47e47 388 Gene3D G3DSA:3.30.70.360 185 280 7.3E-23 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain PP4_RS11470 32e0e9addc431b77c0229d2b71e47e47 388 Pfam PF01546 Peptidase family M20/M25/M40 69 380 5.1E-36 T 22-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 PP4_RS11470 32e0e9addc431b77c0229d2b71e47e47 388 Gene3D G3DSA:3.40.630.10 8 184 1.9E-63 T 22-04-2016 PP4_RS11470 32e0e9addc431b77c0229d2b71e47e47 388 Gene3D G3DSA:3.40.630.10 325 383 1.9E-63 T 22-04-2016 PP4_RS11470 32e0e9addc431b77c0229d2b71e47e47 388 PANTHER PTHR11014 9 388 2.8E-106 T 22-04-2016 PP4_RS11470 32e0e9addc431b77c0229d2b71e47e47 388 Pfam PF07687 Peptidase dimerisation domain 173 282 2.8E-22 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain PP4_RS11470 32e0e9addc431b77c0229d2b71e47e47 388 SUPERFAMILY SSF55031 176 281 7.18E-20 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain PP4_RS11470 32e0e9addc431b77c0229d2b71e47e47 388 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 9 380 1.1E-124 T 22-04-2016 IPR010169 Acetylornithine deacetylase (ArgE) GO:0005737|GO:0006526|GO:0008270|GO:0008777|GO:0050897 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154|UniPathway: UPA00068 PP4_RS11470 32e0e9addc431b77c0229d2b71e47e47 388 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 102 139 - T 22-04-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 PP4_RS11470 32e0e9addc431b77c0229d2b71e47e47 388 SUPERFAMILY SSF53187 306 382 1.77E-58 T 22-04-2016 PP4_RS11470 32e0e9addc431b77c0229d2b71e47e47 388 SUPERFAMILY SSF53187 8 175 1.77E-58 T 22-04-2016 PP4_RS11470 32e0e9addc431b77c0229d2b71e47e47 388 PANTHER PTHR11014:SF80 9 388 2.8E-106 T 22-04-2016 PP4_RS25175 c48ffec44a8367bde32316cd9952a2c3 391 SUPERFAMILY SSF51905 7 222 1.04E-22 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS25175 c48ffec44a8367bde32316cd9952a2c3 391 SUPERFAMILY SSF51905 250 293 1.04E-22 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS25175 c48ffec44a8367bde32316cd9952a2c3 391 Gene3D G3DSA:3.50.50.60 5 237 3.1E-21 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS25175 c48ffec44a8367bde32316cd9952a2c3 391 Pfam PF01266 FAD dependent oxidoreductase 8 335 6.9E-20 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PP4_RS24295 baa28309b282f9ae31a26c12f2ca80cb 161 Gene3D G3DSA:3.10.450.50 2 154 8.6E-52 T 22-04-2016 IPR032710 NTF2-like domain PP4_RS24295 baa28309b282f9ae31a26c12f2ca80cb 161 PANTHER PTHR41534 1 161 3.6E-86 T 22-04-2016 PP4_RS24295 baa28309b282f9ae31a26c12f2ca80cb 161 TIGRFAM TIGR03232 benzo_1_2_benB: benzoate 1,2-dioxygenase, small subunit 7 161 1.4E-90 T 22-04-2016 IPR017641 Benzoate 1,2-dioxygenase, small subunit GO:0016708|GO:0055114 PP4_RS24295 baa28309b282f9ae31a26c12f2ca80cb 161 SUPERFAMILY SSF54427 3 161 2.76E-53 T 22-04-2016 IPR032710 NTF2-like domain PP4_RS24295 baa28309b282f9ae31a26c12f2ca80cb 161 PANTHER PTHR41534:SF1 1 161 3.6E-86 T 22-04-2016 PP4_RS24295 baa28309b282f9ae31a26c12f2ca80cb 161 Pfam PF00866 Ring hydroxylating beta subunit 13 153 2.8E-47 T 22-04-2016 IPR000391 Ring-hydroxylating dioxygenase beta subunit GO:0003824|GO:0006725|GO:0055114 PP4_RS19700 f71fc2f5d8aced1dfc66938ef47aeb8b 771 Gene3D G3DSA:3.40.50.2300 646 767 2.0E-48 T 22-04-2016 PP4_RS19700 f71fc2f5d8aced1dfc66938ef47aeb8b 771 SUPERFAMILY SSF52172 649 767 3.13E-43 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS19700 f71fc2f5d8aced1dfc66938ef47aeb8b 771 Pfam PF00512 His Kinase A (phospho-acceptor) domain 292 356 6.3E-18 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS19700 f71fc2f5d8aced1dfc66938ef47aeb8b 771 PANTHER PTHR24423 270 516 4.5E-144 T 22-04-2016 PP4_RS19700 f71fc2f5d8aced1dfc66938ef47aeb8b 771 PANTHER PTHR24423 632 768 4.5E-144 T 22-04-2016 PP4_RS19700 f71fc2f5d8aced1dfc66938ef47aeb8b 771 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 402 512 2.2E-25 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS19700 f71fc2f5d8aced1dfc66938ef47aeb8b 771 SMART SM00448 650 763 8.7E-42 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS19700 f71fc2f5d8aced1dfc66938ef47aeb8b 771 Gene3D G3DSA:1.10.287.130 284 352 1.8E-14 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS19700 f71fc2f5d8aced1dfc66938ef47aeb8b 771 SUPERFAMILY SSF55874 345 511 4.19E-44 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS19700 f71fc2f5d8aced1dfc66938ef47aeb8b 771 Gene3D G3DSA:3.30.565.10 357 515 1.7E-43 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS19700 f71fc2f5d8aced1dfc66938ef47aeb8b 771 SMART SM00388 291 356 8.2E-23 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS19700 f71fc2f5d8aced1dfc66938ef47aeb8b 771 PANTHER PTHR24423:SF382 270 516 4.5E-144 T 22-04-2016 PP4_RS19700 f71fc2f5d8aced1dfc66938ef47aeb8b 771 PANTHER PTHR24423:SF382 632 768 4.5E-144 T 22-04-2016 PP4_RS19700 f71fc2f5d8aced1dfc66938ef47aeb8b 771 PRINTS PR00344 Bacterial sensor protein C-terminal signature 438 452 2.1E-16 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS19700 f71fc2f5d8aced1dfc66938ef47aeb8b 771 PRINTS PR00344 Bacterial sensor protein C-terminal signature 473 491 2.1E-16 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS19700 f71fc2f5d8aced1dfc66938ef47aeb8b 771 PRINTS PR00344 Bacterial sensor protein C-terminal signature 497 510 2.1E-16 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS19700 f71fc2f5d8aced1dfc66938ef47aeb8b 771 PRINTS PR00344 Bacterial sensor protein C-terminal signature 456 466 2.1E-16 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS19700 f71fc2f5d8aced1dfc66938ef47aeb8b 771 Pfam PF00072 Response regulator receiver domain 652 763 2.3E-29 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS19700 f71fc2f5d8aced1dfc66938ef47aeb8b 771 SUPERFAMILY SSF47384 276 357 2.55E-19 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS19700 f71fc2f5d8aced1dfc66938ef47aeb8b 771 SMART SM00387 402 513 2.1E-36 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS08905 dc888f523d8561963f64f2ed2084252a 441 SMART SM00382 46 163 7.1E-16 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS08905 dc888f523d8561963f64f2ed2084252a 441 Gene3D G3DSA:1.10.3710.10 341 438 2.4E-34 T 22-04-2016 PP4_RS08905 dc888f523d8561963f64f2ed2084252a 441 Pfam PF16193 AAA C-terminal domain 184 260 1.3E-21 T 22-04-2016 IPR032423 AAA ATPase, C-terminal domain PP4_RS08905 dc888f523d8561963f64f2ed2084252a 441 SUPERFAMILY SSF52540 8 231 3.06E-48 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS08905 dc888f523d8561963f64f2ed2084252a 441 SUPERFAMILY SSF48019 245 426 1.98E-74 T 22-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 PP4_RS08905 dc888f523d8561963f64f2ed2084252a 441 Gene3D G3DSA:3.40.50.300 10 151 9.8E-32 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS08905 dc888f523d8561963f64f2ed2084252a 441 Pfam PF12002 MgsA AAA+ ATPase C terminal 261 427 1.1E-66 T 22-04-2016 IPR021886 MgsA AAA+ ATPase C-terminal PP4_RS08905 dc888f523d8561963f64f2ed2084252a 441 PANTHER PTHR13779 11 440 3.3E-195 T 22-04-2016 PP4_RS08905 dc888f523d8561963f64f2ed2084252a 441 Gene3D G3DSA:1.10.8.60 152 235 4.6E-11 T 22-04-2016 PP4_RS08905 dc888f523d8561963f64f2ed2084252a 441 Gene3D G3DSA:1.20.272.10 242 340 1.6E-43 T 22-04-2016 PP4_RS08905 dc888f523d8561963f64f2ed2084252a 441 PANTHER PTHR13779:SF7 11 440 3.3E-195 T 22-04-2016 PP4_RS08905 dc888f523d8561963f64f2ed2084252a 441 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 13 137 1.7E-15 T 22-04-2016 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 PP4_RS21240 b14efd5c619554f19f6e68a87a22a84e 500 PANTHER PTHR22594:SF4 1 499 2.9E-270 T 22-04-2016 PP4_RS21240 b14efd5c619554f19f6e68a87a22a84e 500 Gene3D G3DSA:2.40.50.140 16 149 4.5E-40 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS21240 b14efd5c619554f19f6e68a87a22a84e 500 Pfam PF00152 tRNA synthetases class II (D, K and N) 158 496 3.7E-82 T 22-04-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS21240 b14efd5c619554f19f6e68a87a22a84e 500 PANTHER PTHR22594 1 499 2.9E-270 T 22-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS21240 b14efd5c619554f19f6e68a87a22a84e 500 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 18 499 3.3E-201 T 22-04-2016 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6 PP4_RS21240 b14efd5c619554f19f6e68a87a22a84e 500 SUPERFAMILY SSF55681 157 497 3.83E-122 T 22-04-2016 PP4_RS21240 b14efd5c619554f19f6e68a87a22a84e 500 SUPERFAMILY SSF50249 13 150 1.15E-36 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS21240 b14efd5c619554f19f6e68a87a22a84e 500 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 21 499 43.709 T 22-04-2016 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6 PP4_RS21240 b14efd5c619554f19f6e68a87a22a84e 500 Pfam PF01336 OB-fold nucleic acid binding domain 68 140 1.2E-8 T 22-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 PP4_RS21240 b14efd5c619554f19f6e68a87a22a84e 500 Gene3D G3DSA:3.30.930.10 152 495 5.9E-121 T 22-04-2016 PP4_RS21240 b14efd5c619554f19f6e68a87a22a84e 500 PRINTS PR00982 Lysyl-tRNA synthetase signature 210 226 5.2E-37 T 22-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 PP4_RS21240 b14efd5c619554f19f6e68a87a22a84e 500 PRINTS PR00982 Lysyl-tRNA synthetase signature 194 204 5.2E-37 T 22-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 PP4_RS21240 b14efd5c619554f19f6e68a87a22a84e 500 PRINTS PR00982 Lysyl-tRNA synthetase signature 381 397 5.2E-37 T 22-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 PP4_RS21240 b14efd5c619554f19f6e68a87a22a84e 500 PRINTS PR00982 Lysyl-tRNA synthetase signature 239 252 5.2E-37 T 22-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 PP4_RS21240 b14efd5c619554f19f6e68a87a22a84e 500 PRINTS PR00982 Lysyl-tRNA synthetase signature 257 274 5.2E-37 T 22-04-2016 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6 PP4_RS16255 efef8794be23a1f674c608e722805924 289 SUPERFAMILY SSF161098 7 282 1.96E-56 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS16255 efef8794be23a1f674c608e722805924 289 PANTHER PTHR30193:SF32 15 289 1.1E-96 T 22-04-2016 PP4_RS16255 efef8794be23a1f674c608e722805924 289 PANTHER PTHR30193 15 289 1.1E-96 T 22-04-2016 PP4_RS16255 efef8794be23a1f674c608e722805924 289 Gene3D G3DSA:1.10.3720.10 15 285 3.2E-56 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS16255 efef8794be23a1f674c608e722805924 289 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 97 283 1.9E-14 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS14710 eab276288cb54cacdf43c2a6623977af 769 Gene3D G3DSA:1.10.439.10 31 163 2.8E-36 T 22-04-2016 IPR023343 Penicillin amidase type, domain1 GO:0016811 PP4_RS14710 eab276288cb54cacdf43c2a6623977af 769 PANTHER PTHR34218 23 760 2.8E-239 T 22-04-2016 PP4_RS14710 eab276288cb54cacdf43c2a6623977af 769 Gene3D G3DSA:2.30.120.10 297 358 5.2E-22 T 22-04-2016 PP4_RS14710 eab276288cb54cacdf43c2a6623977af 769 SUPERFAMILY SSF56235 32 758 1.11E-173 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PP4_RS14710 eab276288cb54cacdf43c2a6623977af 769 Gene3D G3DSA:3.60.20.10 378 581 3.7E-82 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PP4_RS14710 eab276288cb54cacdf43c2a6623977af 769 Gene3D G3DSA:3.60.20.10 164 296 3.7E-82 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PP4_RS14710 eab276288cb54cacdf43c2a6623977af 769 Pfam PF01804 Penicillin amidase 34 747 1.1E-132 T 22-04-2016 IPR002692 Penicillin/cephalosporin acylase GO:0016787|GO:0017000 PP4_RS14710 eab276288cb54cacdf43c2a6623977af 769 PANTHER PTHR34218:SF3 23 760 2.8E-239 T 22-04-2016 PP4_RS06815 4453333b2ba0341f46cfd799757616e6 232 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 30 223 2.5E-16 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS06815 4453333b2ba0341f46cfd799757616e6 232 PANTHER PTHR30450 1 232 1.9E-154 T 22-04-2016 PP4_RS06815 4453333b2ba0341f46cfd799757616e6 232 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 117 1.2E-21 T 22-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PP4_RS06815 4453333b2ba0341f46cfd799757616e6 232 PANTHER PTHR30450:SF4 1 232 1.9E-154 T 22-04-2016 PP4_RS06815 4453333b2ba0341f46cfd799757616e6 232 Gene3D G3DSA:1.10.3720.10 13 223 1.1E-40 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS06815 4453333b2ba0341f46cfd799757616e6 232 SUPERFAMILY SSF161098 13 215 8.37E-39 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS23730 d972c92ee40e64d4bf76323324de3488 158 SUPERFAMILY SSF46557 3 78 3.27E-25 T 22-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 PP4_RS23730 d972c92ee40e64d4bf76323324de3488 158 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 5 155 7.2E-50 T 22-04-2016 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 PP4_RS23730 d972c92ee40e64d4bf76323324de3488 158 Gene3D G3DSA:1.10.287.180 3 75 3.7E-28 T 22-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 PP4_RS23730 d972c92ee40e64d4bf76323324de3488 158 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 83 156 1.2E-25 T 22-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 PP4_RS23730 d972c92ee40e64d4bf76323324de3488 158 Pfam PF03449 Transcription elongation factor, N-terminal 5 74 7.4E-26 T 22-04-2016 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 PP4_RS23730 d972c92ee40e64d4bf76323324de3488 158 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 17 48 - T 22-04-2016 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 PP4_RS23730 d972c92ee40e64d4bf76323324de3488 158 PIRSF PIRSF006092 2 158 1.8E-46 T 22-04-2016 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 PP4_RS23730 d972c92ee40e64d4bf76323324de3488 158 Hamap MF_00105 Transcription elongation factor GreA [greA]. 2 156 29.939 T 22-04-2016 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 PP4_RS23730 d972c92ee40e64d4bf76323324de3488 158 Gene3D G3DSA:3.10.50.30 82 156 1.6E-28 T 22-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 PP4_RS23730 d972c92ee40e64d4bf76323324de3488 158 PANTHER PTHR30437 4 155 1.0E-52 T 22-04-2016 PP4_RS23730 d972c92ee40e64d4bf76323324de3488 158 SUPERFAMILY SSF54534 82 156 4.58E-22 T 22-04-2016 PP4_RS27255 5498373787c1aa5760f11226004e58b3 480 PANTHER PTHR23429 4 478 5.3E-214 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS27255 5498373787c1aa5760f11226004e58b3 480 ProSitePatterns PS00069 Glucose-6-phosphate dehydrogenase active site. 173 179 - T 22-04-2016 IPR019796 Glucose-6-phosphate dehydrogenase, active site GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS27255 5498373787c1aa5760f11226004e58b3 480 SUPERFAMILY SSF51735 4 186 8.66E-56 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS27255 5498373787c1aa5760f11226004e58b3 480 SUPERFAMILY SSF55347 173 479 1.99E-115 T 22-04-2016 PP4_RS27255 5498373787c1aa5760f11226004e58b3 480 PANTHER PTHR23429:SF0 4 478 5.3E-214 T 22-04-2016 PP4_RS27255 5498373787c1aa5760f11226004e58b3 480 TIGRFAM TIGR00871 zwf: glucose-6-phosphate dehydrogenase 4 479 2.6E-177 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS27255 5498373787c1aa5760f11226004e58b3 480 Hamap MF_00966 Glucose-6-phosphate 1-dehydrogenase [zwf]. 4 480 83.029 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS27255 5498373787c1aa5760f11226004e58b3 480 Pfam PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain 9 183 1.9E-56 T 22-04-2016 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS27255 5498373787c1aa5760f11226004e58b3 480 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 324 350 1.2E-47 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS27255 5498373787c1aa5760f11226004e58b3 480 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 233 249 1.2E-47 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS27255 5498373787c1aa5760f11226004e58b3 480 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 163 191 1.2E-47 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS27255 5498373787c1aa5760f11226004e58b3 480 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 215 232 1.2E-47 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS27255 5498373787c1aa5760f11226004e58b3 480 PRINTS PR00079 Glucose-6-phosphate dehydrogenase signature 139 152 1.2E-47 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS27255 5498373787c1aa5760f11226004e58b3 480 PIRSF PIRSF000110 2 480 2.9E-177 T 22-04-2016 IPR001282 Glucose-6-phosphate dehydrogenase GO:0004345|GO:0006006|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS27255 5498373787c1aa5760f11226004e58b3 480 Pfam PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain 185 478 2.5E-120 T 22-04-2016 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal GO:0004345|GO:0006006|GO:0050661|GO:0055114 KEGG: 00030+1.1.1.49|KEGG: 00480+1.1.1.49|MetaCyc: PWY-7268|UniPathway: UPA00115 PP4_RS27255 5498373787c1aa5760f11226004e58b3 480 Gene3D G3DSA:3.40.50.720 4 182 3.1E-59 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS27255 5498373787c1aa5760f11226004e58b3 480 Gene3D G3DSA:3.30.360.10 183 479 3.7E-126 T 22-04-2016 PP4_RS16475 ff480626b083995a898fb0726dccec8a 410 Gene3D G3DSA:3.30.1540.10 226 312 2.9E-20 T 22-04-2016 PP4_RS16475 ff480626b083995a898fb0726dccec8a 410 Gene3D G3DSA:3.40.50.10540 313 403 2.4E-109 T 22-04-2016 IPR023606 CoA-transferase family III domain PP4_RS16475 ff480626b083995a898fb0726dccec8a 410 Gene3D G3DSA:3.40.50.10540 3 218 2.4E-109 T 22-04-2016 IPR023606 CoA-transferase family III domain PP4_RS16475 ff480626b083995a898fb0726dccec8a 410 SUPERFAMILY SSF89796 5 403 1.31E-122 T 22-04-2016 IPR023606 CoA-transferase family III domain PP4_RS16475 ff480626b083995a898fb0726dccec8a 410 Pfam PF02515 CoA-transferase family III 7 380 6.5E-123 T 22-04-2016 IPR003673 CoA-transferase family III GO:0003824 PP4_RS16475 ff480626b083995a898fb0726dccec8a 410 PANTHER PTHR24023:SF593 72 390 2.6E-34 T 22-04-2016 PP4_RS16475 ff480626b083995a898fb0726dccec8a 410 PANTHER PTHR24023 72 390 2.6E-34 T 22-04-2016 PP4_RS13630 17e2c87da1dae476d293142a86d439c9 209 Gene3D G3DSA:3.10.450.50 12 129 6.3E-24 T 22-04-2016 IPR032710 NTF2-like domain PP4_RS13630 17e2c87da1dae476d293142a86d439c9 209 Pfam PF13577 SnoaL-like domain 11 129 1.5E-20 T 22-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain PP4_RS13630 17e2c87da1dae476d293142a86d439c9 209 SUPERFAMILY SSF54427 9 140 4.73E-31 T 22-04-2016 IPR032710 NTF2-like domain PP4_RS15325 eaf39ad40da2dcc10406654b004688db 257 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 24 248 1.5E-17 T 22-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase PP4_RS15325 eaf39ad40da2dcc10406654b004688db 257 PANTHER PTHR15822:SF7 20 255 2.0E-83 T 22-04-2016 PP4_RS15325 eaf39ad40da2dcc10406654b004688db 257 Gene3D G3DSA:3.60.10.10 17 195 5.5E-15 T 22-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase PP4_RS15325 eaf39ad40da2dcc10406654b004688db 257 SUPERFAMILY SSF56219 20 255 6.94E-50 T 22-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase PP4_RS15325 eaf39ad40da2dcc10406654b004688db 257 PANTHER PTHR15822 20 255 2.0E-83 T 22-04-2016 PP4_RS02725 110d8619bdb681302a7165ca7229ba22 329 Gene3D G3DSA:3.40.50.1170 4 178 2.0E-49 T 22-04-2016 IPR027474 L-asparaginase, N-terminal PP4_RS02725 110d8619bdb681302a7165ca7229ba22 329 ProSitePatterns PS00144 Asparaginase / glutaminase active site signature 1. 9 17 - T 22-04-2016 IPR020827 Asparaginase/glutaminase, active site 1 GO:0006520 PP4_RS02725 110d8619bdb681302a7165ca7229ba22 329 SMART SM00870 6 317 3.0E-88 T 22-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 PP4_RS02725 110d8619bdb681302a7165ca7229ba22 329 PIRSF PIRSF001220 1 328 2.7E-74 T 22-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 PP4_RS02725 110d8619bdb681302a7165ca7229ba22 329 PIRSF PIRSF500176 3 326 1.3E-84 T 22-04-2016 PP4_RS02725 110d8619bdb681302a7165ca7229ba22 329 Gene3D G3DSA:3.40.50.40 205 327 7.7E-34 T 22-04-2016 IPR027473 L-asparaginase, C-terminal domain PP4_RS02725 110d8619bdb681302a7165ca7229ba22 329 PANTHER PTHR11707 2 327 2.8E-94 T 22-04-2016 PP4_RS02725 110d8619bdb681302a7165ca7229ba22 329 PANTHER PTHR11707:SF3 2 327 2.8E-94 T 22-04-2016 PP4_RS02725 110d8619bdb681302a7165ca7229ba22 329 Pfam PF00710 Asparaginase, N-terminal 7 177 4.3E-45 T 22-04-2016 IPR027474 L-asparaginase, N-terminal PP4_RS02725 110d8619bdb681302a7165ca7229ba22 329 PRINTS PR00139 Asparaginase/glutaminase family signature 7 18 5.4E-13 T 22-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 PP4_RS02725 110d8619bdb681302a7165ca7229ba22 329 PRINTS PR00139 Asparaginase/glutaminase family signature 86 104 5.4E-13 T 22-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 PP4_RS02725 110d8619bdb681302a7165ca7229ba22 329 PRINTS PR00139 Asparaginase/glutaminase family signature 254 272 5.4E-13 T 22-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 PP4_RS02725 110d8619bdb681302a7165ca7229ba22 329 SUPERFAMILY SSF53774 3 328 7.46E-83 T 22-04-2016 IPR006034 Asparaginase/glutaminase GO:0006520 PP4_RS15235 20b2962629ba4a1f9f51867f669d60b9 176 SUPERFAMILY SSF47741 95 165 4.19E-29 T 22-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 PP4_RS15235 20b2962629ba4a1f9f51867f669d60b9 176 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 17 72 4.6E-7 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS15235 20b2962629ba4a1f9f51867f669d60b9 176 Gene3D G3DSA:3.10.20.30 11 85 2.0E-29 T 22-04-2016 IPR012675 Beta-grasp domain PP4_RS15235 20b2962629ba4a1f9f51867f669d60b9 176 Pfam PF01799 [2Fe-2S] binding domain 84 156 4.5E-30 T 22-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 PP4_RS15235 20b2962629ba4a1f9f51867f669d60b9 176 SUPERFAMILY SSF54292 12 98 8.0E-25 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS15235 20b2962629ba4a1f9f51867f669d60b9 176 PANTHER PTHR11908 10 146 9.0E-35 T 22-04-2016 PP4_RS15235 20b2962629ba4a1f9f51867f669d60b9 176 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 50 58 - T 22-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 PP4_RS15235 20b2962629ba4a1f9f51867f669d60b9 176 PANTHER PTHR11908:SF66 10 146 9.0E-35 T 22-04-2016 PP4_RS15235 20b2962629ba4a1f9f51867f669d60b9 176 Gene3D G3DSA:1.10.150.120 86 167 3.1E-33 T 22-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 PP4_RS12935 a375a20c9a10481482541c5ff0fe569e 299 Pfam PF03466 LysR substrate binding domain 88 295 5.5E-40 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS12935 a375a20c9a10481482541c5ff0fe569e 299 PANTHER PTHR30346:SF0 1 297 1.7E-84 T 22-04-2016 PP4_RS12935 a375a20c9a10481482541c5ff0fe569e 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 5.5E-20 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS12935 a375a20c9a10481482541c5ff0fe569e 299 PANTHER PTHR30346 1 297 1.7E-84 T 22-04-2016 PP4_RS12935 a375a20c9a10481482541c5ff0fe569e 299 SUPERFAMILY SSF46785 3 87 2.73E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS12935 a375a20c9a10481482541c5ff0fe569e 299 Gene3D G3DSA:1.10.10.10 3 85 7.1E-27 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS12935 a375a20c9a10481482541c5ff0fe569e 299 Gene3D G3DSA:3.40.190.10 178 264 2.1E-26 T 22-04-2016 PP4_RS12935 a375a20c9a10481482541c5ff0fe569e 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.7E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS12935 a375a20c9a10481482541c5ff0fe569e 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.7E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS12935 a375a20c9a10481482541c5ff0fe569e 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.7E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS12935 a375a20c9a10481482541c5ff0fe569e 299 Gene3D G3DSA:3.40.190.10 91 177 3.1E-26 T 22-04-2016 PP4_RS12935 a375a20c9a10481482541c5ff0fe569e 299 SUPERFAMILY SSF53850 89 296 1.18E-37 T 22-04-2016 PP4_RS14290 c295723f28d6c589b2134557e15bd53f 311 Pfam PF09084 NMT1/THI5 like 63 237 6.4E-16 T 22-04-2016 IPR015168 SsuA/THI5-like PP4_RS14290 c295723f28d6c589b2134557e15bd53f 311 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 34 296 4.8E-55 T 22-04-2016 IPR010067 Aliphatic sulfonates-binding protein GO:0006790|GO:0006810|GO:0016020 PP4_RS14290 c295723f28d6c589b2134557e15bd53f 311 PANTHER PTHR30024 4 309 3.0E-99 T 22-04-2016 PP4_RS14290 c295723f28d6c589b2134557e15bd53f 311 Gene3D G3DSA:3.40.190.10 102 212 1.0E-19 T 22-04-2016 PP4_RS14290 c295723f28d6c589b2134557e15bd53f 311 SMART SM00062 24 235 1.5E-4 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS14290 c295723f28d6c589b2134557e15bd53f 311 PANTHER PTHR30024:SF3 4 309 3.0E-99 T 22-04-2016 PP4_RS14290 c295723f28d6c589b2134557e15bd53f 311 SUPERFAMILY SSF53850 31 247 1.21E-38 T 22-04-2016 PP4_RS01630 879061fd38452342e225942e565f41fc 256 Gene3D G3DSA:3.20.20.70 5 256 8.8E-110 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS01630 879061fd38452342e225942e565f41fc 256 SUPERFAMILY SSF51366 3 256 1.18E-84 T 22-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 PP4_RS01630 879061fd38452342e225942e565f41fc 256 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 3 256 1.5E-114 T 22-04-2016 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 UniPathway: UPA00031 PP4_RS01630 879061fd38452342e225942e565f41fc 256 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 2 256 49.053 T 22-04-2016 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 UniPathway: UPA00031 PP4_RS01630 879061fd38452342e225942e565f41fc 256 PANTHER PTHR21235 3 256 7.9E-127 T 22-04-2016 PP4_RS01630 879061fd38452342e225942e565f41fc 256 Pfam PF00977 Histidine biosynthesis protein 6 240 2.4E-92 T 22-04-2016 IPR006062 Histidine biosynthesis GO:0000105 PP4_RS01630 879061fd38452342e225942e565f41fc 256 PANTHER PTHR21235:SF2 3 256 7.9E-127 T 22-04-2016 PP4_RS02795 7e1d88549c3ed36ec532723955d33e92 189 Pfam PF10986 Protein of unknown function (DUF2796) 32 184 1.4E-51 T 22-04-2016 IPR021253 Protein of unknown function DUF2796 PP4_RS17885 dea97c9235e05c6c353f8210484eb23c 621 Pfam PF06980 Protein of unknown function (DUF1302) 38 621 2.0E-134 T 22-04-2016 IPR010727 Protein of unknown function DUF1302 PP4_RS26750 587d6154c3565e13f1d5159a5e254ea7 87 PANTHER PTHR38040:SF1 2 87 3.6E-27 T 22-04-2016 PP4_RS26750 587d6154c3565e13f1d5159a5e254ea7 87 PANTHER PTHR38040 2 87 3.6E-27 T 22-04-2016 PP4_RS26750 587d6154c3565e13f1d5159a5e254ea7 87 Pfam PF04380 Membrane fusogenic activity 5 79 1.5E-23 T 22-04-2016 IPR007475 Membrane fusogenic activity PP4_RS22330 adc47c6c02834965214a2b995f112015 261 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 6 166 1.8E-77 T 22-04-2016 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|UniPathway: UPA00136 PP4_RS22330 adc47c6c02834965214a2b995f112015 261 SUPERFAMILY SSF51161 2 170 3.74E-55 T 22-04-2016 IPR011004 Trimeric LpxA-like PP4_RS22330 adc47c6c02834965214a2b995f112015 261 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 118 152 1.1E-6 T 22-04-2016 IPR001451 Hexapeptide repeat PP4_RS22330 adc47c6c02834965214a2b995f112015 261 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 72 108 0.0016 T 22-04-2016 IPR001451 Hexapeptide repeat PP4_RS22330 adc47c6c02834965214a2b995f112015 261 Gene3D G3DSA:1.10.3130.10 1 58 2.7E-26 T 22-04-2016 PP4_RS22330 adc47c6c02834965214a2b995f112015 261 PANTHER PTHR23416:SF55 1 219 1.7E-104 T 22-04-2016 PP4_RS22330 adc47c6c02834965214a2b995f112015 261 Gene3D G3DSA:2.160.10.10 59 220 3.4E-37 T 22-04-2016 PP4_RS22330 adc47c6c02834965214a2b995f112015 261 PANTHER PTHR23416 1 219 1.7E-104 T 22-04-2016 PP4_RS18800 ec7804a42189d49e5e57b6fce27f66e4 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 279 308 1.6E-21 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS18800 ec7804a42189d49e5e57b6fce27f66e4 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 357 384 1.6E-21 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS18800 ec7804a42189d49e5e57b6fce27f66e4 521 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 386 415 1.6E-21 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS18800 ec7804a42189d49e5e57b6fce27f66e4 521 Pfam PF08447 PAS fold 31 114 3.5E-15 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 PP4_RS18800 ec7804a42189d49e5e57b6fce27f66e4 521 PANTHER PTHR32089 48 521 3.9E-158 T 22-04-2016 PP4_RS18800 ec7804a42189d49e5e57b6fce27f66e4 521 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 20 112 3.1E-13 T 22-04-2016 IPR000014 PAS domain PP4_RS18800 ec7804a42189d49e5e57b6fce27f66e4 521 Gene3D G3DSA:3.30.450.20 20 112 4.1E-23 T 22-04-2016 PP4_RS18800 ec7804a42189d49e5e57b6fce27f66e4 521 Gene3D G3DSA:1.10.287.950 274 491 1.6E-60 T 22-04-2016 PP4_RS18800 ec7804a42189d49e5e57b6fce27f66e4 521 SMART SM00086 80 121 0.0096 T 22-04-2016 IPR001610 PAC motif PP4_RS18800 ec7804a42189d49e5e57b6fce27f66e4 521 ProSitePatterns PS00914 Syntaxin / epimorphin family signature. 442 481 - T 22-04-2016 IPR006012 Syntaxin/epimorphin, conserved site GO:0005484|GO:0006886|GO:0016020 Reactome: REACT_11184 PP4_RS18800 ec7804a42189d49e5e57b6fce27f66e4 521 PANTHER PTHR32089:SF64 48 521 3.9E-158 T 22-04-2016 PP4_RS18800 ec7804a42189d49e5e57b6fce27f66e4 521 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 327 519 3.0E-51 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS18800 ec7804a42189d49e5e57b6fce27f66e4 521 SUPERFAMILY SSF55785 21 113 1.57E-26 T 22-04-2016 IPR000014 PAS domain PP4_RS18800 ec7804a42189d49e5e57b6fce27f66e4 521 SMART SM00283 259 520 4.8E-75 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS18800 ec7804a42189d49e5e57b6fce27f66e4 521 SUPERFAMILY SSF58104 239 521 1.13E-74 T 22-04-2016 PP4_RS26180 016ede10431eead691b3316e12cc78f4 463 Pfam PF11067 Protein of unknown function (DUF2868) 150 446 3.1E-92 T 22-04-2016 IPR021296 Protein of unknown function DUF2868 PP4_RS17715 4d3b620c906dcf0f9c2dfacf95aa6672 579 Gene3D G3DSA:3.40.190.10 205 448 8.5E-43 T 22-04-2016 PP4_RS17715 4d3b620c906dcf0f9c2dfacf95aa6672 579 Gene3D G3DSA:3.40.190.10 86 204 2.1E-10 T 22-04-2016 PP4_RS17715 4d3b620c906dcf0f9c2dfacf95aa6672 579 PANTHER PTHR30061 89 540 2.1E-17 T 22-04-2016 PP4_RS17715 4d3b620c906dcf0f9c2dfacf95aa6672 579 PIRSF PIRSF035859 1 579 0.0 T 22-04-2016 IPR014597 ABC transporter, periplasmic substrate-binding protein GO:0005215 PP4_RS17715 4d3b620c906dcf0f9c2dfacf95aa6672 579 SUPERFAMILY SSF53850 70 519 3.84E-60 T 22-04-2016 PP4_RS04900 cecc5b1ad183c3b0286bad6019a7aded 368 PANTHER PTHR11941 6 193 1.0E-99 T 22-04-2016 PP4_RS04900 cecc5b1ad183c3b0286bad6019a7aded 368 PANTHER PTHR11941 260 337 1.0E-99 T 22-04-2016 PP4_RS04900 cecc5b1ad183c3b0286bad6019a7aded 368 Pfam PF16113 Enoyl-CoA hydratase/isomerase 16 354 1.3E-111 T 22-04-2016 IPR032259 Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type GO:0003860 PP4_RS04900 cecc5b1ad183c3b0286bad6019a7aded 368 PANTHER PTHR11941:SF53 6 193 1.0E-99 T 22-04-2016 PP4_RS04900 cecc5b1ad183c3b0286bad6019a7aded 368 PANTHER PTHR11941:SF53 260 337 1.0E-99 T 22-04-2016 PP4_RS04900 cecc5b1ad183c3b0286bad6019a7aded 368 SUPERFAMILY SSF52096 268 337 2.4E-60 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS04900 cecc5b1ad183c3b0286bad6019a7aded 368 SUPERFAMILY SSF52096 11 201 2.4E-60 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS04900 cecc5b1ad183c3b0286bad6019a7aded 368 Gene3D G3DSA:3.90.226.10 14 204 2.1E-50 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS17045 91ea158daf4e2550094c20bfe9597f90 144 PANTHER PTHR34192 8 115 2.4E-12 T 22-04-2016 PP4_RS17045 91ea158daf4e2550094c20bfe9597f90 144 Gene3D G3DSA:2.60.40.420 24 140 7.1E-35 T 22-04-2016 IPR008972 Cupredoxin PP4_RS17045 91ea158daf4e2550094c20bfe9597f90 144 SUPERFAMILY SSF49503 25 123 9.81E-28 T 22-04-2016 IPR008972 Cupredoxin PP4_RS17045 91ea158daf4e2550094c20bfe9597f90 144 TIGRFAM TIGR02375 pseudoazurin: pseudoazurin 28 138 9.8E-39 T 22-04-2016 IPR012745 Pseudoazurin GO:0005507 PP4_RS17045 91ea158daf4e2550094c20bfe9597f90 144 PRINTS PR00156 Type I copper blue protein family signature 45 58 1.8E-11 T 22-04-2016 IPR001235 Blue (type 1) copper protein, plastocyanin-type GO:0005507|GO:0009055 PP4_RS17045 91ea158daf4e2550094c20bfe9597f90 144 PRINTS PR00156 Type I copper blue protein family signature 91 105 1.8E-11 T 22-04-2016 IPR001235 Blue (type 1) copper protein, plastocyanin-type GO:0005507|GO:0009055 PP4_RS17045 91ea158daf4e2550094c20bfe9597f90 144 PRINTS PR00156 Type I copper blue protein family signature 59 74 1.8E-11 T 22-04-2016 IPR001235 Blue (type 1) copper protein, plastocyanin-type GO:0005507|GO:0009055 PP4_RS17045 91ea158daf4e2550094c20bfe9597f90 144 Pfam PF00127 Copper binding proteins, plastocyanin/azurin family 27 113 5.0E-13 T 22-04-2016 IPR000923 Blue (type 1) copper domain GO:0005507|GO:0009055 PP4_RS17045 91ea158daf4e2550094c20bfe9597f90 144 PRINTS PR00155 Amicyanin family signature 39 58 2.2E-30 T 22-04-2016 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 PP4_RS17045 91ea158daf4e2550094c20bfe9597f90 144 PRINTS PR00155 Amicyanin family signature 59 74 2.2E-30 T 22-04-2016 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 PP4_RS17045 91ea158daf4e2550094c20bfe9597f90 144 PRINTS PR00155 Amicyanin family signature 80 95 2.2E-30 T 22-04-2016 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 PP4_RS17045 91ea158daf4e2550094c20bfe9597f90 144 PRINTS PR00155 Amicyanin family signature 23 38 2.2E-30 T 22-04-2016 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 PP4_RS17045 91ea158daf4e2550094c20bfe9597f90 144 PRINTS PR00155 Amicyanin family signature 96 111 2.2E-30 T 22-04-2016 IPR002386 Amicyanin/Pseudoazurin GO:0005507|GO:0009055 PP4_RS26490 05d9bc235b029ed01870ac957133be24 432 PIRSF PIRSF000423 1 432 1.0E-191 T 22-04-2016 IPR010167 Amino-acid N-acetyltransferase (ArgA) GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068 PP4_RS26490 05d9bc235b029ed01870ac957133be24 432 Hamap MF_01105 Amino-acid acetyltransferase [argA]. 1 432 225.038 T 22-04-2016 IPR010167 Amino-acid N-acetyltransferase (ArgA) GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068 PP4_RS26490 05d9bc235b029ed01870ac957133be24 432 PANTHER PTHR30602:SF3 1 432 2.2E-250 T 22-04-2016 PP4_RS26490 05d9bc235b029ed01870ac957133be24 432 PANTHER PTHR30602 1 432 2.2E-250 T 22-04-2016 PP4_RS26490 05d9bc235b029ed01870ac957133be24 432 Gene3D G3DSA:3.40.1160.10 21 281 2.7E-61 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PP4_RS26490 05d9bc235b029ed01870ac957133be24 432 Pfam PF00696 Amino acid kinase family 36 259 2.2E-21 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PP4_RS26490 05d9bc235b029ed01870ac957133be24 432 SUPERFAMILY SSF53633 3 283 7.68E-65 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PP4_RS26490 05d9bc235b029ed01870ac957133be24 432 Gene3D G3DSA:3.40.630.30 288 428 1.9E-37 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS26490 05d9bc235b029ed01870ac957133be24 432 Pfam PF00583 Acetyltransferase (GNAT) family 331 403 7.2E-9 T 22-04-2016 IPR000182 GNAT domain GO:0008080 PP4_RS26490 05d9bc235b029ed01870ac957133be24 432 SUPERFAMILY SSF55729 287 410 2.09E-19 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS26490 05d9bc235b029ed01870ac957133be24 432 TIGRFAM TIGR01890 N-Ac-Glu-synth: amino-acid N-acetyltransferase 4 432 2.6E-225 T 22-04-2016 IPR010167 Amino-acid N-acetyltransferase (ArgA) GO:0004042|GO:0005737|GO:0006526 KEGG: 00220+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068 PP4_RS17985 3b78c0269cd8ab2c1e1914a8d9f9cf1f 602 Gene3D G3DSA:3.40.50.300 392 577 1.4E-32 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS17985 3b78c0269cd8ab2c1e1914a8d9f9cf1f 602 PANTHER PTHR11384:SF3 44 594 9.2E-203 T 22-04-2016 PP4_RS17985 3b78c0269cd8ab2c1e1914a8d9f9cf1f 602 SUPERFAMILY SSF90123 57 373 4.32E-16 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PP4_RS17985 3b78c0269cd8ab2c1e1914a8d9f9cf1f 602 ProSitePatterns PS00211 ABC transporters family signature. 516 530 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS17985 3b78c0269cd8ab2c1e1914a8d9f9cf1f 602 PANTHER PTHR11384 44 594 9.2E-203 T 22-04-2016 PP4_RS17985 3b78c0269cd8ab2c1e1914a8d9f9cf1f 602 SUPERFAMILY SSF52540 387 584 2.51E-34 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS17985 3b78c0269cd8ab2c1e1914a8d9f9cf1f 602 Gene3D G3DSA:1.20.1560.10 45 373 8.4E-5 T 22-04-2016 PP4_RS17985 3b78c0269cd8ab2c1e1914a8d9f9cf1f 602 Pfam PF00005 ABC transporter 411 544 2.2E-19 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS17985 3b78c0269cd8ab2c1e1914a8d9f9cf1f 602 SMART SM00382 418 591 1.1E-9 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS17985 3b78c0269cd8ab2c1e1914a8d9f9cf1f 602 Pfam PF06472 ABC transporter transmembrane region 2 38 325 6.3E-74 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PP4_RS05615 fa20b9b11f2e9e414027e8ca47fde5ae 298 Gene3D G3DSA:3.60.110.10 10 286 1.2E-81 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PP4_RS05615 fa20b9b11f2e9e414027e8ca47fde5ae 298 SUPERFAMILY SSF56317 9 285 3.01E-76 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PP4_RS05615 fa20b9b11f2e9e414027e8ca47fde5ae 298 PANTHER PTHR23088 1 290 8.2E-81 T 22-04-2016 PP4_RS05615 fa20b9b11f2e9e414027e8ca47fde5ae 298 Pfam PF00795 Carbon-nitrogen hydrolase 12 266 2.7E-53 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PP4_RS10925 21f930a68bc106031ddb3405822d9b84 361 SUPERFAMILY SSF51735 7 157 6.5E-32 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS10925 21f930a68bc106031ddb3405822d9b84 361 Gene3D G3DSA:3.40.50.720 7 141 7.6E-29 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS10925 21f930a68bc106031ddb3405822d9b84 361 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 55 127 5.5E-11 T 22-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 PP4_RS10925 21f930a68bc106031ddb3405822d9b84 361 Gene3D G3DSA:3.30.360.10 142 278 1.0E-28 T 22-04-2016 PP4_RS10925 21f930a68bc106031ddb3405822d9b84 361 Gene3D G3DSA:3.30.360.10 311 352 1.0E-28 T 22-04-2016 PP4_RS10925 21f930a68bc106031ddb3405822d9b84 361 SUPERFAMILY SSF55347 133 297 1.8E-21 T 22-04-2016 PP4_RS10925 21f930a68bc106031ddb3405822d9b84 361 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 142 229 1.5E-6 T 22-04-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 PP4_RS10925 21f930a68bc106031ddb3405822d9b84 361 PANTHER PTHR22604 302 360 2.0E-49 T 22-04-2016 PP4_RS10925 21f930a68bc106031ddb3405822d9b84 361 PANTHER PTHR22604 62 284 2.0E-49 T 22-04-2016 PP4_RS05175 b691258cf0524e11bf66a6e3054e23f2 499 Gene3D G3DSA:3.30.420.40 6 251 9.5E-107 T 22-04-2016 PP4_RS05175 b691258cf0524e11bf66a6e3054e23f2 499 PANTHER PTHR10196 1 498 9.3E-265 T 22-04-2016 PP4_RS05175 b691258cf0524e11bf66a6e3054e23f2 499 SUPERFAMILY SSF53067 9 253 7.37E-97 T 22-04-2016 PP4_RS05175 b691258cf0524e11bf66a6e3054e23f2 499 PANTHER PTHR10196:SF9 1 498 9.3E-265 T 22-04-2016 PP4_RS05175 b691258cf0524e11bf66a6e3054e23f2 499 Gene3D G3DSA:3.30.420.40 252 495 8.3E-104 T 22-04-2016 PP4_RS05175 b691258cf0524e11bf66a6e3054e23f2 499 SUPERFAMILY SSF53067 252 495 1.68E-86 T 22-04-2016 PP4_RS05175 b691258cf0524e11bf66a6e3054e23f2 499 Pfam PF02782 FGGY family of carbohydrate kinases, C-terminal domain 259 449 4.4E-63 T 22-04-2016 IPR018485 Carbohydrate kinase, FGGY, C-terminal GO:0005975|GO:0016773 PP4_RS05175 b691258cf0524e11bf66a6e3054e23f2 499 TIGRFAM TIGR01311 glycerol_kin: glycerol kinase 8 494 3.1E-225 T 22-04-2016 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 PP4_RS05175 b691258cf0524e11bf66a6e3054e23f2 499 Pfam PF00370 FGGY family of carbohydrate kinases, N-terminal domain 9 250 7.9E-87 T 22-04-2016 IPR018484 Carbohydrate kinase, FGGY, N-terminal GO:0005975|GO:0016773 PP4_RS05175 b691258cf0524e11bf66a6e3054e23f2 499 ProSitePatterns PS00445 FGGY family of carbohydrate kinases signature 2. 360 380 - T 22-04-2016 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 PP4_RS05175 b691258cf0524e11bf66a6e3054e23f2 499 ProSitePatterns PS00933 FGGY family of carbohydrate kinases signature 1. 139 151 - T 22-04-2016 IPR018483 Carbohydrate kinase, FGGY, conserved site GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 PP4_RS05175 b691258cf0524e11bf66a6e3054e23f2 499 Hamap MF_00186 Glycerol kinase [glpK]. 7 495 58.775 T 22-04-2016 IPR005999 Glycerol kinase GO:0004370|GO:0006072 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 PP4_RS05175 b691258cf0524e11bf66a6e3054e23f2 499 PIRSF PIRSF000538 7 499 4.6E-178 T 22-04-2016 IPR000577 Carbohydrate kinase, FGGY GO:0005975|GO:0016773 KEGG: 00561+2.7.1.30|MetaCyc: PWY-4261|UniPathway: UPA00618 PP4_RS11535 e09e4ec1bdfaa3efbb15bfe33117b3ef 338 PANTHER PTHR30177:SF14 32 321 1.1E-113 T 22-04-2016 PP4_RS11535 e09e4ec1bdfaa3efbb15bfe33117b3ef 338 Gene3D G3DSA:3.40.190.100 113 267 4.9E-43 T 22-04-2016 PP4_RS11535 e09e4ec1bdfaa3efbb15bfe33117b3ef 338 PANTHER PTHR30177 32 321 1.1E-113 T 22-04-2016 PP4_RS11535 e09e4ec1bdfaa3efbb15bfe33117b3ef 338 SUPERFAMILY SSF53850 26 333 1.09E-75 T 22-04-2016 PP4_RS11535 e09e4ec1bdfaa3efbb15bfe33117b3ef 338 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 31 316 2.5E-61 T 22-04-2016 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0005215|GO:0006810 PP4_RS11535 e09e4ec1bdfaa3efbb15bfe33117b3ef 338 Gene3D G3DSA:3.40.190.10 28 112 1.6E-18 T 22-04-2016 PP4_RS11535 e09e4ec1bdfaa3efbb15bfe33117b3ef 338 Gene3D G3DSA:3.40.190.10 268 328 1.6E-18 T 22-04-2016 PP4_RS11485 2330ef6ef070d718abfb87cb4de58c11 116 Gene3D G3DSA:2.60.120.10 19 109 3.3E-36 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS11485 2330ef6ef070d718abfb87cb4de58c11 116 SUPERFAMILY SSF51182 18 110 1.4E-15 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS16875 f9bbeb959e605affaa74fadc68774d2b 474 Pfam PF00392 Bacterial regulatory proteins, gntR family 13 75 9.4E-15 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS16875 f9bbeb959e605affaa74fadc68774d2b 474 SUPERFAMILY SSF53383 115 462 7.51E-78 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS16875 f9bbeb959e605affaa74fadc68774d2b 474 PANTHER PTHR11751 87 473 5.4E-93 T 22-04-2016 PP4_RS16875 f9bbeb959e605affaa74fadc68774d2b 474 SUPERFAMILY SSF46785 5 83 1.24E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16875 f9bbeb959e605affaa74fadc68774d2b 474 Gene3D G3DSA:1.10.10.10 2 76 6.8E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16875 f9bbeb959e605affaa74fadc68774d2b 474 Gene3D G3DSA:3.40.640.10 144 361 8.6E-60 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS16875 f9bbeb959e605affaa74fadc68774d2b 474 Pfam PF00155 Aminotransferase class I and II 138 463 2.1E-40 T 22-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PP4_RS16875 f9bbeb959e605affaa74fadc68774d2b 474 PANTHER PTHR11751:SF386 87 473 5.4E-93 T 22-04-2016 PP4_RS16875 f9bbeb959e605affaa74fadc68774d2b 474 SMART SM00345 16 75 1.6E-13 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS09140 583a30fb9c4f2efcb83c2450c091bd51 355 Pfam PF01636 Phosphotransferase enzyme family 38 274 1.6E-48 T 22-04-2016 IPR002575 Aminoglycoside phosphotransferase PP4_RS09140 583a30fb9c4f2efcb83c2450c091bd51 355 PANTHER PTHR21310 15 265 2.1E-16 T 22-04-2016 PP4_RS09140 583a30fb9c4f2efcb83c2450c091bd51 355 SUPERFAMILY SSF56112 21 340 3.28E-61 T 22-04-2016 IPR011009 Protein kinase-like domain PP4_RS09140 583a30fb9c4f2efcb83c2450c091bd51 355 Gene3D G3DSA:3.90.1200.10 135 344 1.3E-39 T 22-04-2016 PP4_RS09140 583a30fb9c4f2efcb83c2450c091bd51 355 PANTHER PTHR21310:SF14 15 265 2.1E-16 T 22-04-2016 PP4_RS21275 2b6a442b6a577726f5936ac680ed1041 168 Pfam PF01584 CheW-like domain 19 151 3.1E-26 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS21275 2b6a442b6a577726f5936ac680ed1041 168 SMART SM00260 14 150 1.3E-13 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS21275 2b6a442b6a577726f5936ac680ed1041 168 PANTHER PTHR22617:SF33 20 166 2.6E-33 T 22-04-2016 PP4_RS21275 2b6a442b6a577726f5936ac680ed1041 168 PANTHER PTHR22617 20 166 2.6E-33 T 22-04-2016 PP4_RS21275 2b6a442b6a577726f5936ac680ed1041 168 SUPERFAMILY SSF50341 19 156 1.57E-26 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS04270 00ee0c85c518357c432d0ec8530fae2a 291 PIRSF PIRSF005917 4 290 5.1E-102 T 22-04-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PP4_RS04270 00ee0c85c518357c432d0ec8530fae2a 291 PANTHER PTHR21091 3 226 1.1E-85 T 22-04-2016 PP4_RS04270 00ee0c85c518357c432d0ec8530fae2a 291 SUPERFAMILY SSF53790 13 233 3.66E-81 T 22-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 PP4_RS04270 00ee0c85c518357c432d0ec8530fae2a 291 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 14 214 1.6E-28 T 22-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 PP4_RS04270 00ee0c85c518357c432d0ec8530fae2a 291 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 15 286 6.4E-92 T 22-04-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PP4_RS04270 00ee0c85c518357c432d0ec8530fae2a 291 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 14 235 36.35 T 22-04-2016 IPR008189 rRNA small subunit methyltransferase I GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PP4_RS04270 00ee0c85c518357c432d0ec8530fae2a 291 PANTHER PTHR21091:SF18 3 226 1.1E-85 T 22-04-2016 PP4_RS04270 00ee0c85c518357c432d0ec8530fae2a 291 Gene3D G3DSA:3.30.950.10 123 235 4.2E-41 T 22-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 PP4_RS04270 00ee0c85c518357c432d0ec8530fae2a 291 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 92 103 - T 22-04-2016 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PP4_RS04270 00ee0c85c518357c432d0ec8530fae2a 291 Gene3D G3DSA:3.40.1010.10 13 122 1.6E-13 T 22-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 PP4_RS26675 53137094b834f8d9d55af0530982d84f 219 PIRSF PIRSF006320 2 217 3.8E-104 T 22-04-2016 IPR026041 Enhancing lycopene biosynthesis protein 2 PP4_RS26675 53137094b834f8d9d55af0530982d84f 219 Gene3D G3DSA:3.40.50.880 1 218 9.9E-103 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS26675 53137094b834f8d9d55af0530982d84f 219 SUPERFAMILY SSF52317 3 217 9.72E-63 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS26675 53137094b834f8d9d55af0530982d84f 219 PANTHER PTHR10224 1 219 2.1E-122 T 22-04-2016 PP4_RS24255 33629e07ac66720817f5ea1a05647828 446 Gene3D G3DSA:1.20.1250.20 23 198 2.9E-32 T 22-04-2016 PP4_RS24255 33629e07ac66720817f5ea1a05647828 446 Gene3D G3DSA:1.20.1250.20 252 431 6.3E-23 T 22-04-2016 PP4_RS24255 33629e07ac66720817f5ea1a05647828 446 Pfam PF07690 Major Facilitator Superfamily 28 334 1.7E-39 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS24255 33629e07ac66720817f5ea1a05647828 446 ProSitePatterns PS00217 Sugar transport proteins signature 2. 118 143 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PP4_RS24255 33629e07ac66720817f5ea1a05647828 446 SUPERFAMILY SSF103473 11 434 8.37E-78 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS24255 33629e07ac66720817f5ea1a05647828 446 PANTHER PTHR24064 4 428 2.7E-67 T 22-04-2016 PP4_RS24255 33629e07ac66720817f5ea1a05647828 446 PANTHER PTHR24064:SF293 4 428 2.7E-67 T 22-04-2016 PP4_RS02225 08d7f555a04e5168eab2de719c8c45c7 223 Gene3D G3DSA:3.90.550.10 1 221 2.0E-56 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS02225 08d7f555a04e5168eab2de719c8c45c7 223 SUPERFAMILY SSF53448 1 219 4.28E-57 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS02225 08d7f555a04e5168eab2de719c8c45c7 223 Pfam PF00483 Nucleotidyl transferase 2 115 1.3E-20 T 22-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 PP4_RS02225 08d7f555a04e5168eab2de719c8c45c7 223 PANTHER PTHR22572 2 222 2.0E-52 T 22-04-2016 PP4_RS03145 a67f9eab1046ad5f9c86a14fb2b61a53 272 PIRSF PIRSF018982 1 259 1.8E-108 T 22-04-2016 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7|UniPathway: UPA00560 PP4_RS03145 a67f9eab1046ad5f9c86a14fb2b61a53 272 Pfam PF05985 Ethanolamine ammonia-lyase light chain (EutC) 10 247 1.5E-93 T 22-04-2016 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7|UniPathway: UPA00560 PP4_RS03145 a67f9eab1046ad5f9c86a14fb2b61a53 272 Hamap MF_00601 Ethanolamine ammonia-lyase light chain [eutC]. 2 247 39.277 T 22-04-2016 IPR009246 Ethanolamine ammonia-lyase light chain GO:0006520|GO:0008851 KEGG: 00564+4.3.1.7|UniPathway: UPA00560 PP4_RS03145 a67f9eab1046ad5f9c86a14fb2b61a53 272 PANTHER PTHR39330 1 264 5.4E-121 T 22-04-2016 PP4_RS06180 a5542f229f8a66b8ca71b57127bba412 97 Pfam PF05166 YcgL domain 5 77 5.7E-30 T 22-04-2016 IPR027354 YcgL domain PP4_RS06180 a5542f229f8a66b8ca71b57127bba412 97 Hamap MF_01866 Protein YcgL [ycgL]. 3 90 24.835 T 22-04-2016 IPR027354 YcgL domain PP4_RS06180 a5542f229f8a66b8ca71b57127bba412 97 ProDom PD030374 YCGL UNCHARACTERIZED SIMILAR BACTERIA HI1446 Y2231 HYDROLASE CYTOPLASMIC YPO2080 SO2575 4 83 6.0E-39 T 22-04-2016 IPR027354 YcgL domain PP4_RS06180 a5542f229f8a66b8ca71b57127bba412 97 SUPERFAMILY SSF160191 2 95 2.09E-34 T 22-04-2016 PP4_RS06180 a5542f229f8a66b8ca71b57127bba412 97 PANTHER PTHR38109 4 97 3.7E-34 T 22-04-2016 PP4_RS00215 73a67a8d8951b63b1b8f145cfd7a41db 294 SMART SM00849 18 212 1.0E-27 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS00215 73a67a8d8951b63b1b8f145cfd7a41db 294 Gene3D G3DSA:3.60.15.10 12 259 1.7E-50 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS00215 73a67a8d8951b63b1b8f145cfd7a41db 294 SUPERFAMILY SSF56281 17 258 1.76E-49 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS00215 73a67a8d8951b63b1b8f145cfd7a41db 294 PANTHER PTHR11935:SF110 1 289 2.9E-114 T 22-04-2016 PP4_RS00215 73a67a8d8951b63b1b8f145cfd7a41db 294 Pfam PF00753 Metallo-beta-lactamase superfamily 23 212 1.0E-18 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS00215 73a67a8d8951b63b1b8f145cfd7a41db 294 PANTHER PTHR11935 1 289 2.9E-114 T 22-04-2016 PP4_RS20955 cb337c4990468e2f8bd765ae6ae68202 542 SUPERFAMILY SSF52317 287 540 9.02E-91 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS20955 cb337c4990468e2f8bd765ae6ae68202 542 TIGRFAM TIGR00337 PyrG: CTP synthase 2 534 7.7E-255 T 22-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 PP4_RS20955 cb337c4990468e2f8bd765ae6ae68202 542 Pfam PF06418 CTP synthase N-terminus 3 265 1.2E-125 T 22-04-2016 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 PP4_RS20955 cb337c4990468e2f8bd765ae6ae68202 542 Gene3D G3DSA:3.40.50.880 286 540 2.4E-100 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS20955 cb337c4990468e2f8bd765ae6ae68202 542 Pfam PF00117 Glutamine amidotransferase class-I 300 534 2.1E-60 T 22-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 PP4_RS20955 cb337c4990468e2f8bd765ae6ae68202 542 PANTHER PTHR11550 1 541 0.0 T 22-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 PP4_RS20955 cb337c4990468e2f8bd765ae6ae68202 542 Gene3D G3DSA:3.40.50.300 1 280 7.9E-134 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS20955 cb337c4990468e2f8bd765ae6ae68202 542 SUPERFAMILY SSF52540 1 267 4.25E-122 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS20955 cb337c4990468e2f8bd765ae6ae68202 542 Hamap MF_01227 CTP synthase [pyrG]. 2 539 51.449 T 22-04-2016 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: REACT_1698|UniPathway: UPA00159 PP4_RS26035 39ed8378f485e69d174d9f4bfde32031 391 Pfam PF06969 HemN C-terminal domain 317 379 1.2E-12 T 22-04-2016 IPR010723 HemN, C-terminal PP4_RS26035 39ed8378f485e69d174d9f4bfde32031 391 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 20 381 1.0E-118 T 22-04-2016 IPR004559 Coproporphyrinogen III oxidase, oxygen-independent related GO:0004109|GO:0005737|GO:0006779|GO:0055114 KEGG: 00071+1.3.99.-|KEGG: 00280+1.3.99.-|KEGG: 00281+1.3.99.-|KEGG: 00362+1.3.99.-|KEGG: 00626+1.3.99.-|KEGG: 00930+1.3.99.- PP4_RS26035 39ed8378f485e69d174d9f4bfde32031 391 PANTHER PTHR13932:SF7 17 391 4.8E-197 T 22-04-2016 PP4_RS26035 39ed8378f485e69d174d9f4bfde32031 391 SMART SM00729 18 234 1.5E-60 T 22-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 PP4_RS26035 39ed8378f485e69d174d9f4bfde32031 391 PANTHER PTHR13932 17 391 4.8E-197 T 22-04-2016 PP4_RS26035 39ed8378f485e69d174d9f4bfde32031 391 SUPERFAMILY SSF102114 12 390 3.01E-111 T 22-04-2016 PP4_RS26035 39ed8378f485e69d174d9f4bfde32031 391 Gene3D G3DSA:3.80.30.20 20 249 5.6E-35 T 22-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe PP4_RS26035 39ed8378f485e69d174d9f4bfde32031 391 Pfam PF04055 Radical SAM superfamily 23 187 2.5E-19 T 22-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 PP4_RS14655 0e97a0439c5b95c2ac7c4615c68a5b41 297 SUPERFAMILY SSF56112 18 221 3.57E-21 T 22-04-2016 IPR011009 Protein kinase-like domain PP4_RS14655 0e97a0439c5b95c2ac7c4615c68a5b41 297 Gene3D G3DSA:3.30.200.20 17 125 4.4E-15 T 22-04-2016 PP4_RS14655 0e97a0439c5b95c2ac7c4615c68a5b41 297 PANTHER PTHR10593:SF19 6 266 8.3E-135 T 22-04-2016 PP4_RS14655 0e97a0439c5b95c2ac7c4615c68a5b41 297 Gene3D G3DSA:1.10.510.10 139 224 1.1E-18 T 22-04-2016 PP4_RS14655 0e97a0439c5b95c2ac7c4615c68a5b41 297 Pfam PF01163 RIO1 family 31 221 2.1E-47 T 22-04-2016 PP4_RS14655 0e97a0439c5b95c2ac7c4615c68a5b41 297 SMART SM00090 2 234 1.8E-19 T 22-04-2016 IPR000687 RIO kinase GO:0004674|GO:0005524 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 PP4_RS14655 0e97a0439c5b95c2ac7c4615c68a5b41 297 ProSitePatterns PS01245 RIO1/ZK632.3/MJ0444 family signature. 164 175 - T 22-04-2016 IPR018935 RIO kinase, conserved site GO:0004674|GO:0005524 KEGG: 04150+2.7.11.1|KEGG: 04151+2.7.11.1 PP4_RS14655 0e97a0439c5b95c2ac7c4615c68a5b41 297 PANTHER PTHR10593 6 266 8.3E-135 T 22-04-2016 PP4_RS14000 657af2eb2654628fa0dc46e7ad4137c9 226 Gene3D G3DSA:3.40.50.1240 70 186 8.4E-10 T 22-04-2016 IPR029033 Histidine phosphatase superfamily PP4_RS14000 657af2eb2654628fa0dc46e7ad4137c9 226 SUPERFAMILY SSF53254 70 179 2.75E-14 T 22-04-2016 IPR029033 Histidine phosphatase superfamily PP4_RS10520 e74f5433af8ad6518047e15e5f714456 312 PANTHER PTHR11795 6 311 1.8E-113 T 22-04-2016 PP4_RS10520 e74f5433af8ad6518047e15e5f714456 312 Pfam PF02653 Branched-chain amino acid transport system / permease component 12 296 1.2E-46 T 22-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 PP4_RS10520 e74f5433af8ad6518047e15e5f714456 312 PANTHER PTHR11795:SF371 6 311 1.8E-113 T 22-04-2016 PP4_RS12630 07afcf93621836a6c6f38fe64f8d115b 218 Gene3D G3DSA:3.40.810.20 4 214 2.6E-90 T 22-04-2016 PP4_RS12630 07afcf93621836a6c6f38fe64f8d115b 218 ProSitePatterns PS01274 Coenzyme A transferases signature 2. 44 52 - T 22-04-2016 IPR004164 Coenzyme A transferase active site GO:0008152|GO:0008410 PP4_RS12630 07afcf93621836a6c6f38fe64f8d115b 218 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 4 208 1.8E-100 T 22-04-2016 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 PP4_RS12630 07afcf93621836a6c6f38fe64f8d115b 218 PANTHER PTHR13707 2 218 3.6E-115 T 22-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 PP4_RS12630 07afcf93621836a6c6f38fe64f8d115b 218 Pfam PF01144 Coenzyme A transferase 6 201 1.2E-40 T 22-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 PP4_RS12630 07afcf93621836a6c6f38fe64f8d115b 218 SMART SM00882 6 202 4.0E-72 T 22-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 PP4_RS12630 07afcf93621836a6c6f38fe64f8d115b 218 SUPERFAMILY SSF100950 4 216 3.59E-75 T 22-04-2016 PP4_RS08735 dbb2ba3be396c30e3788cb6c56e0bc07 424 Gene3D G3DSA:3.20.20.70 5 309 1.2E-76 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS08735 dbb2ba3be396c30e3788cb6c56e0bc07 424 PANTHER PTHR11938:SF102 3 400 4.0E-82 T 22-04-2016 PP4_RS08735 dbb2ba3be396c30e3788cb6c56e0bc07 424 PANTHER PTHR11938 3 400 4.0E-82 T 22-04-2016 PP4_RS08735 dbb2ba3be396c30e3788cb6c56e0bc07 424 SUPERFAMILY SSF54862 338 418 1.42E-12 T 22-04-2016 PP4_RS08735 dbb2ba3be396c30e3788cb6c56e0bc07 424 Pfam PF01180 Dihydroorotate dehydrogenase 7 305 4.8E-27 T 22-04-2016 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 PP4_RS08735 dbb2ba3be396c30e3788cb6c56e0bc07 424 Gene3D G3DSA:3.30.70.20 324 407 2.1E-15 T 22-04-2016 PP4_RS08735 dbb2ba3be396c30e3788cb6c56e0bc07 424 TIGRFAM TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein 5 319 5.5E-49 T 22-04-2016 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 PP4_RS08735 dbb2ba3be396c30e3788cb6c56e0bc07 424 SUPERFAMILY SSF51395 1 320 8.99E-74 T 22-04-2016 PP4_RS08735 dbb2ba3be396c30e3788cb6c56e0bc07 424 Pfam PF14697 4Fe-4S dicluster domain 338 400 9.6E-23 T 22-04-2016 PP4_RS08735 dbb2ba3be396c30e3788cb6c56e0bc07 424 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 382 393 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PP4_RS08735 dbb2ba3be396c30e3788cb6c56e0bc07 424 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 345 356 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PP4_RS12985 e037ca157e7e3de8a76980f2004d77b4 413 SUPERFAMILY SSF51338 3 61 8.64E-6 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PP4_RS12985 e037ca157e7e3de8a76980f2004d77b4 413 PANTHER PTHR32027:SF0 1 408 6.6E-138 T 22-04-2016 PP4_RS12985 e037ca157e7e3de8a76980f2004d77b4 413 SUPERFAMILY SSF51556 52 372 8.08E-104 T 22-04-2016 IPR032466 Metal-dependent hydrolase PP4_RS12985 e037ca157e7e3de8a76980f2004d77b4 413 PANTHER PTHR32027 1 408 6.6E-138 T 22-04-2016 PP4_RS12985 e037ca157e7e3de8a76980f2004d77b4 413 Gene3D G3DSA:3.20.20.140 60 360 1.1E-118 T 22-04-2016 PP4_RS12985 e037ca157e7e3de8a76980f2004d77b4 413 Pfam PF07969 Amidohydrolase family 43 381 5.7E-40 T 22-04-2016 IPR013108 Amidohydrolase 3 PP4_RS12985 e037ca157e7e3de8a76980f2004d77b4 413 Gene3D G3DSA:2.30.40.10 17 59 2.4E-4 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PP4_RS13650 134d7f95327cfa2af1f60577db4e0e0c 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 119 132 5.7E-14 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS13650 134d7f95327cfa2af1f60577db4e0e0c 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 219 233 5.7E-14 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS13650 134d7f95327cfa2af1f60577db4e0e0c 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 105 118 5.7E-14 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS13650 134d7f95327cfa2af1f60577db4e0e0c 276 PRINTS PR00111 Alpha/beta hydrolase fold signature 60 75 5.7E-14 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS13650 134d7f95327cfa2af1f60577db4e0e0c 276 Pfam PF12697 Alpha/beta hydrolase family 33 266 6.8E-16 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS13650 134d7f95327cfa2af1f60577db4e0e0c 276 Gene3D G3DSA:3.40.50.1820 10 274 3.8E-55 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS13650 134d7f95327cfa2af1f60577db4e0e0c 276 SUPERFAMILY SSF53474 10 275 1.45E-55 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS13650 134d7f95327cfa2af1f60577db4e0e0c 276 PANTHER PTHR10992 13 275 1.7E-46 T 22-04-2016 PP4_RS06485 63caa06d000683044fa939b20d9380cd 562 Gene3D G3DSA:3.30.300.30 464 561 8.8E-32 T 22-04-2016 PP4_RS06485 63caa06d000683044fa939b20d9380cd 562 PANTHER PTHR24096 177 560 5.0E-176 T 22-04-2016 PP4_RS06485 63caa06d000683044fa939b20d9380cd 562 PANTHER PTHR24096 18 161 5.0E-176 T 22-04-2016 PP4_RS06485 63caa06d000683044fa939b20d9380cd 562 Gene3D G3DSA:3.40.50.980 219 386 8.7E-41 T 22-04-2016 PP4_RS06485 63caa06d000683044fa939b20d9380cd 562 Gene3D G3DSA:2.30.38.10 387 460 4.1E-31 T 22-04-2016 PP4_RS06485 63caa06d000683044fa939b20d9380cd 562 SUPERFAMILY SSF56801 23 561 8.24E-153 T 22-04-2016 PP4_RS06485 63caa06d000683044fa939b20d9380cd 562 Pfam PF00501 AMP-binding enzyme 30 469 9.3E-110 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PP4_RS06485 63caa06d000683044fa939b20d9380cd 562 Gene3D G3DSA:3.40.50.980 185 218 1.9E-35 T 22-04-2016 PP4_RS06485 63caa06d000683044fa939b20d9380cd 562 Gene3D G3DSA:3.40.50.980 23 145 1.9E-35 T 22-04-2016 PP4_RS06485 63caa06d000683044fa939b20d9380cd 562 Pfam PF13193 AMP-binding enzyme C-terminal domain 478 552 1.3E-20 T 22-04-2016 IPR025110 AMP-binding enzyme C-terminal domain PP4_RS06485 63caa06d000683044fa939b20d9380cd 562 ProSitePatterns PS00455 Putative AMP-binding domain signature. 212 223 - T 22-04-2016 IPR020845 AMP-binding, conserved site PP4_RS12700 76b8587744ca22c25da50abe42450491 174 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 121 149 - T 22-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 PP4_RS12700 76b8587744ca22c25da50abe42450491 174 PIRSF PIRSF000441 4 174 8.5E-46 T 22-04-2016 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|UniPathway: UPA00136 PP4_RS12700 76b8587744ca22c25da50abe42450491 174 SUPERFAMILY SSF51161 23 162 3.05E-31 T 22-04-2016 IPR011004 Trimeric LpxA-like PP4_RS12700 76b8587744ca22c25da50abe42450491 174 PANTHER PTHR23416:SF55 1 162 6.0E-31 T 22-04-2016 PP4_RS12700 76b8587744ca22c25da50abe42450491 174 Gene3D G3DSA:2.160.10.10 46 164 2.0E-24 T 22-04-2016 PP4_RS12700 76b8587744ca22c25da50abe42450491 174 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 114 145 2.2E-5 T 22-04-2016 IPR001451 Hexapeptide repeat PP4_RS12700 76b8587744ca22c25da50abe42450491 174 PANTHER PTHR23416 1 162 6.0E-31 T 22-04-2016 PP4_RS17530 8fae6fbcd118c481bde80a3765613429 244 PANTHER PTHR23293:SF11 6 240 1.5E-107 T 22-04-2016 PP4_RS17530 8fae6fbcd118c481bde80a3765613429 244 SUPERFAMILY SSF52402 9 199 1.18E-44 T 22-04-2016 PP4_RS17530 8fae6fbcd118c481bde80a3765613429 244 Pfam PF01507 Phosphoadenosine phosphosulfate reductase family 34 211 2.3E-45 T 22-04-2016 IPR002500 Phosphoadenosine phosphosulphate reductase GO:0003824|GO:0008152 PP4_RS17530 8fae6fbcd118c481bde80a3765613429 244 TIGRFAM TIGR00434 cysH: phosophoadenylyl-sulfate reductase 19 236 4.7E-50 T 22-04-2016 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8|UniPathway: UPA00140 PP4_RS17530 8fae6fbcd118c481bde80a3765613429 244 TIGRFAM TIGR02055 APS_reductase: adenylylsulfate reductase, thioredoxin dependent 40 235 3.5E-84 T 22-04-2016 IPR011798 Adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019344|GO:0055114 KEGG: 00920+1.8.4.8|UniPathway: UPA00140 PP4_RS17530 8fae6fbcd118c481bde80a3765613429 244 PANTHER PTHR23293 6 240 1.5E-107 T 22-04-2016 PP4_RS17530 8fae6fbcd118c481bde80a3765613429 244 Gene3D G3DSA:3.40.50.620 4 207 3.7E-50 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS17530 8fae6fbcd118c481bde80a3765613429 244 PIRSF PIRSF000857 2 241 3.1E-81 T 22-04-2016 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase GO:0004604|GO:0019379|GO:0055114 KEGG: 00920+1.8.4.8|UniPathway: UPA00140 PP4_RS26860 961e507f6c2c52815ace481cf87fdd8b 134 PANTHER PTHR40942 1 133 3.5E-39 T 22-04-2016 PP4_RS26860 961e507f6c2c52815ace481cf87fdd8b 134 PRINTS PR00607 Class IE cytochrome C signature 65 76 2.8E-19 T 22-04-2016 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 PP4_RS26860 961e507f6c2c52815ace481cf87fdd8b 134 PRINTS PR00607 Class IE cytochrome C signature 76 86 2.8E-19 T 22-04-2016 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 PP4_RS26860 961e507f6c2c52815ace481cf87fdd8b 134 PRINTS PR00607 Class IE cytochrome C signature 121 132 2.8E-19 T 22-04-2016 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 PP4_RS26860 961e507f6c2c52815ace481cf87fdd8b 134 PRINTS PR00607 Class IE cytochrome C signature 106 118 2.8E-19 T 22-04-2016 IPR002323 Cytochrome c, class IE GO:0005506|GO:0009055|GO:0020037 PP4_RS26860 961e507f6c2c52815ace481cf87fdd8b 134 PANTHER PTHR40942:SF1 1 133 3.5E-39 T 22-04-2016 PP4_RS26860 961e507f6c2c52815ace481cf87fdd8b 134 SUPERFAMILY SSF46626 53 131 8.93E-14 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS26860 961e507f6c2c52815ace481cf87fdd8b 134 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 56 128 5.1E-11 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS26860 961e507f6c2c52815ace481cf87fdd8b 134 Gene3D G3DSA:1.10.760.10 55 132 4.3E-28 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS20690 2aeaac3f2f5e851c7c1dd49a9e7e4812 357 Pfam PF01594 Domain of unknown function DUF20 12 339 1.6E-53 T 22-04-2016 IPR002549 Transmembrane protein TqsA-like PP4_RS20690 2aeaac3f2f5e851c7c1dd49a9e7e4812 357 PANTHER PTHR21716 1 349 8.8E-60 T 22-04-2016 IPR002549 Transmembrane protein TqsA-like PP4_RS25010 5cfd283da72af761ebd457bf15185a23 323 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 7 304 9.6E-101 T 22-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 PP4_RS25010 5cfd283da72af761ebd457bf15185a23 323 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 7 314 30.131 T 22-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 PP4_RS25010 5cfd283da72af761ebd457bf15185a23 323 SUPERFAMILY SSF52540 8 152 3.64E-16 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25010 5cfd283da72af761ebd457bf15185a23 323 Pfam PF01715 IPP transferase 41 298 9.3E-86 T 22-04-2016 IPR018022 tRNA dimethylallyltransferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781 PP4_RS25010 5cfd283da72af761ebd457bf15185a23 323 PANTHER PTHR11088 3 302 1.4E-111 T 22-04-2016 PP4_RS25010 5cfd283da72af761ebd457bf15185a23 323 Gene3D G3DSA:1.10.287.890 213 295 1.1E-33 T 22-04-2016 PP4_RS25010 5cfd283da72af761ebd457bf15185a23 323 Gene3D G3DSA:3.40.50.300 4 174 6.5E-55 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS19775 0b8f8a136d5272df1c2b0afc6358920d 142 TIGRFAM TIGR03561 organ_hyd_perox: peroxiredoxin, Ohr subfamily 7 140 1.1E-55 T 22-04-2016 IPR019953 Organic hydroperoxide resistance protein famiy GO:0006979 PP4_RS19775 0b8f8a136d5272df1c2b0afc6358920d 142 PANTHER PTHR33797:SF2 1 142 7.0E-68 T 22-04-2016 PP4_RS19775 0b8f8a136d5272df1c2b0afc6358920d 142 SUPERFAMILY SSF82784 1 141 1.57E-44 T 22-04-2016 IPR003718 OsmC/Ohr family PP4_RS19775 0b8f8a136d5272df1c2b0afc6358920d 142 Gene3D G3DSA:2.20.25.10 2 47 1.5E-19 T 22-04-2016 PP4_RS19775 0b8f8a136d5272df1c2b0afc6358920d 142 PANTHER PTHR33797 1 142 7.0E-68 T 22-04-2016 PP4_RS19775 0b8f8a136d5272df1c2b0afc6358920d 142 Pfam PF02566 OsmC-like protein 43 138 8.1E-17 T 22-04-2016 IPR003718 OsmC/Ohr family PP4_RS19775 0b8f8a136d5272df1c2b0afc6358920d 142 Gene3D G3DSA:3.30.300.20 48 141 2.8E-37 T 22-04-2016 IPR015946 K homology domain-like, alpha/beta PP4_RS19345 67addbb5f71ae46894270fe56a83b5bd 477 PRINTS PR00415 Aconitase family signature 200 213 1.8E-47 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS19345 67addbb5f71ae46894270fe56a83b5bd 477 PRINTS PR00415 Aconitase family signature 138 153 1.8E-47 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS19345 67addbb5f71ae46894270fe56a83b5bd 477 PRINTS PR00415 Aconitase family signature 87 100 1.8E-47 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS19345 67addbb5f71ae46894270fe56a83b5bd 477 PRINTS PR00415 Aconitase family signature 124 137 1.8E-47 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS19345 67addbb5f71ae46894270fe56a83b5bd 477 PRINTS PR00415 Aconitase family signature 113 121 1.8E-47 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS19345 67addbb5f71ae46894270fe56a83b5bd 477 PRINTS PR00415 Aconitase family signature 214 227 1.8E-47 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS19345 67addbb5f71ae46894270fe56a83b5bd 477 PRINTS PR00415 Aconitase family signature 405 418 1.8E-47 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS19345 67addbb5f71ae46894270fe56a83b5bd 477 PRINTS PR00415 Aconitase family signature 291 305 1.8E-47 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS19345 67addbb5f71ae46894270fe56a83b5bd 477 PRINTS PR00415 Aconitase family signature 348 359 1.8E-47 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS19345 67addbb5f71ae46894270fe56a83b5bd 477 PANTHER PTHR11670:SF38 332 471 1.1E-279 T 22-04-2016 PP4_RS19345 67addbb5f71ae46894270fe56a83b5bd 477 PANTHER PTHR11670:SF38 1 312 1.1E-279 T 22-04-2016 PP4_RS19345 67addbb5f71ae46894270fe56a83b5bd 477 Gene3D G3DSA:3.40.1060.10 172 286 5.9E-40 T 22-04-2016 IPR015932 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 2 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS19345 67addbb5f71ae46894270fe56a83b5bd 477 Pfam PF00330 Aconitase family (aconitate hydratase) 8 463 7.2E-154 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS19345 67addbb5f71ae46894270fe56a83b5bd 477 SUPERFAMILY SSF53732 2 471 1.31E-162 T 22-04-2016 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS19345 67addbb5f71ae46894270fe56a83b5bd 477 TIGRFAM TIGR00170 leuC: 3-isopropylmalate dehydratase, large subunit 3 471 4.0E-232 T 22-04-2016 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS19345 67addbb5f71ae46894270fe56a83b5bd 477 Hamap MF_01026 3-isopropylmalate dehydratase large subunit [leuC]. 2 472 61.156 T 22-04-2016 IPR004430 3-isopropylmalate dehydratase, large subunit GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS19345 67addbb5f71ae46894270fe56a83b5bd 477 PANTHER PTHR11670 332 471 1.1E-279 T 22-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS19345 67addbb5f71ae46894270fe56a83b5bd 477 PANTHER PTHR11670 1 312 1.1E-279 T 22-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS19345 67addbb5f71ae46894270fe56a83b5bd 477 Gene3D G3DSA:3.30.499.10 340 472 2.9E-61 T 22-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS19345 67addbb5f71ae46894270fe56a83b5bd 477 ProSitePatterns PS00450 Aconitase family signature 1. 344 360 - T 22-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS19345 67addbb5f71ae46894270fe56a83b5bd 477 ProSitePatterns PS01244 Aconitase family signature 2. 405 418 - T 22-04-2016 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS19345 67addbb5f71ae46894270fe56a83b5bd 477 Gene3D G3DSA:3.30.499.10 4 162 6.9E-20 T 22-04-2016 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS03255 d53e77ef65e914178f97976cc53caf4d 355 Pfam PF10095 Uncharacterized protein conserved in bacteria (DUF2333) 31 355 1.1E-155 T 22-04-2016 IPR016936 Uncharacterised conserved protein UCP029693 PP4_RS03255 d53e77ef65e914178f97976cc53caf4d 355 PIRSF PIRSF029693 1 355 4.7E-216 T 22-04-2016 IPR016936 Uncharacterised conserved protein UCP029693 PP4_RS01065 fdf9914625a16c240de310be3d6bf540 407 PANTHER PTHR30489 201 407 1.9E-19 T 22-04-2016 PP4_RS01065 fdf9914625a16c240de310be3d6bf540 407 PANTHER PTHR30489 6 184 1.9E-19 T 22-04-2016 PP4_RS01065 fdf9914625a16c240de310be3d6bf540 407 Pfam PF02687 FtsX-like permease family 281 400 1.1E-9 T 22-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 PP4_RS17780 dc6b0cc523a24f41b90b6b427c45a465 142 Pfam PF05232 Chlorhexidine efflux transporter 71 133 2.2E-22 T 22-04-2016 IPR007896 Chlorhexidine efflux transporter PP4_RS17780 dc6b0cc523a24f41b90b6b427c45a465 142 Pfam PF05232 Chlorhexidine efflux transporter 3 65 8.9E-20 T 22-04-2016 IPR007896 Chlorhexidine efflux transporter PP4_RS17780 dc6b0cc523a24f41b90b6b427c45a465 142 PANTHER PTHR42641:SF1 1 139 1.3E-76 T 22-04-2016 PP4_RS17780 dc6b0cc523a24f41b90b6b427c45a465 142 PANTHER PTHR42641 1 139 1.3E-76 T 22-04-2016 PP4_RS16560 39ce5d10a22b86aaca67ac73368a1693 139 Gene3D G3DSA:3.10.180.10 10 134 7.1E-29 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PP4_RS16560 39ce5d10a22b86aaca67ac73368a1693 139 SUPERFAMILY SSF54593 2 134 2.34E-27 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PP4_RS16560 39ce5d10a22b86aaca67ac73368a1693 139 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 9 131 1.2E-16 T 22-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain PP4_RS16560 39ce5d10a22b86aaca67ac73368a1693 139 PANTHER PTHR10374 1 134 5.3E-42 T 22-04-2016 PP4_RS16560 39ce5d10a22b86aaca67ac73368a1693 139 PANTHER PTHR10374:SF9 1 134 5.3E-42 T 22-04-2016 PP4_RS07510 2d73de32ac8b609c3e2e22f89b17581b 146 SUPERFAMILY SSF143744 1 137 3.14E-34 T 22-04-2016 PP4_RS07510 2d73de32ac8b609c3e2e22f89b17581b 146 Pfam PF03928 Haem-degrading 4 134 8.1E-26 T 22-04-2016 IPR005624 Haem-degrading PP4_RS07510 2d73de32ac8b609c3e2e22f89b17581b 146 PANTHER PTHR34309 1 145 3.2E-56 T 22-04-2016 PP4_RS07510 2d73de32ac8b609c3e2e22f89b17581b 146 PANTHER PTHR34309:SF3 1 145 3.2E-56 T 22-04-2016 PP4_RS01810 04476b653be44732f8e13e50a913b089 191 Pfam PF11075 Protein of unknown function VcgC/VcgE (DUF2780) 9 177 3.8E-47 T 22-04-2016 IPR021302 Protein of unknown function DUF2780, VcgC/VcgE PP4_RS10490 587a0c4d44113405e0052c6c404f5ff7 270 Gene3D G3DSA:3.40.50.720 6 190 5.6E-31 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS10490 587a0c4d44113405e0052c6c404f5ff7 270 PANTHER PTHR10366 7 217 6.5E-44 T 22-04-2016 PP4_RS10490 587a0c4d44113405e0052c6c404f5ff7 270 Pfam PF01370 NAD dependent epimerase/dehydratase family 9 166 4.7E-19 T 22-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 PP4_RS10490 587a0c4d44113405e0052c6c404f5ff7 270 PANTHER PTHR10366:SF476 7 217 6.5E-44 T 22-04-2016 PP4_RS10490 587a0c4d44113405e0052c6c404f5ff7 270 SUPERFAMILY SSF51735 6 238 1.03E-38 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS02460 4afe19b0544a7eb8ff6ea0c4798fb459 166 PANTHER PTHR11560 2 164 2.3E-55 T 22-04-2016 PP4_RS02460 4afe19b0544a7eb8ff6ea0c4798fb459 166 ProSitePatterns PS01109 Ribosomal protein L10 signature. 8 42 - T 22-04-2016 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02460 4afe19b0544a7eb8ff6ea0c4798fb459 166 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 76 154 4.0E-5 T 22-04-2016 PP4_RS02460 4afe19b0544a7eb8ff6ea0c4798fb459 166 Pfam PF00466 Ribosomal protein L10 5 101 3.4E-26 T 22-04-2016 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 PP4_RS02460 4afe19b0544a7eb8ff6ea0c4798fb459 166 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 3 161 27.599 T 22-04-2016 IPR022973 Ribosomal protein L10 PP4_RS02460 4afe19b0544a7eb8ff6ea0c4798fb459 166 SUPERFAMILY SSF160369 4 160 1.7E-48 T 22-04-2016 PP4_RS04380 f4c15a7442d927b41f7b3db66973fc82 188 SUPERFAMILY SSF89028 7 181 6.47E-58 T 22-04-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 PP4_RS04380 f4c15a7442d927b41f7b3db66973fc82 188 Gene3D G3DSA:1.20.1200.10 17 183 1.6E-57 T 22-04-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 PP4_RS04380 f4c15a7442d927b41f7b3db66973fc82 188 Pfam PF01923 Cobalamin adenosyltransferase 8 168 1.0E-53 T 22-04-2016 IPR016030 Adenosylcobalamin biosynthesis, ATP:cob(I)alamin adenosyltransferase-like KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269 PP4_RS04380 f4c15a7442d927b41f7b3db66973fc82 188 PANTHER PTHR12213:SF0 3 181 2.0E-74 T 22-04-2016 PP4_RS04380 f4c15a7442d927b41f7b3db66973fc82 188 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 9 181 1.6E-50 T 22-04-2016 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 PP4_RS04380 f4c15a7442d927b41f7b3db66973fc82 188 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 14 181 3.0E-76 T 22-04-2016 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 PP4_RS04380 f4c15a7442d927b41f7b3db66973fc82 188 PANTHER PTHR12213 3 181 2.0E-74 T 22-04-2016 PP4_RS11320 7a74999490f3839d786787e54fb64489 260 Pfam PF00005 ABC transporter 36 184 1.9E-38 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS11320 7a74999490f3839d786787e54fb64489 260 PIRSF PIRSF039085 17 260 2.2E-107 T 22-04-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 PP4_RS11320 7a74999490f3839d786787e54fb64489 260 Gene3D G3DSA:3.40.50.300 20 255 5.7E-83 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS11320 7a74999490f3839d786787e54fb64489 260 PANTHER PTHR24220:SF474 22 259 5.7E-150 T 22-04-2016 PP4_RS11320 7a74999490f3839d786787e54fb64489 260 SUPERFAMILY SSF52540 20 254 5.2E-79 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS11320 7a74999490f3839d786787e54fb64489 260 SMART SM00382 45 232 2.1E-14 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS11320 7a74999490f3839d786787e54fb64489 260 PANTHER PTHR24220 22 259 5.7E-150 T 22-04-2016 PP4_RS11320 7a74999490f3839d786787e54fb64489 260 ProSitePatterns PS00211 ABC transporters family signature. 156 170 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS22870 aeb28492c7cd42ded5e0bc90b20ac341 265 SUPERFAMILY SSF53681 111 259 2.94E-40 T 22-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PP4_RS22870 aeb28492c7cd42ded5e0bc90b20ac341 265 Hamap MF_00258 Glutamate racemase [murI]. 6 257 36.063 T 22-04-2016 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PP4_RS22870 aeb28492c7cd42ded5e0bc90b20ac341 265 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 72 80 - T 22-04-2016 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PP4_RS22870 aeb28492c7cd42ded5e0bc90b20ac341 265 Gene3D G3DSA:3.40.50.1860 5 175 1.3E-51 T 22-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PP4_RS22870 aeb28492c7cd42ded5e0bc90b20ac341 265 SUPERFAMILY SSF53681 7 109 8.83E-31 T 22-04-2016 IPR001920 Asp/Glu racemase GO:0008152|GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PP4_RS22870 aeb28492c7cd42ded5e0bc90b20ac341 265 PANTHER PTHR21198:SF2 1 265 7.4E-98 T 22-04-2016 PP4_RS22870 aeb28492c7cd42ded5e0bc90b20ac341 265 TIGRFAM TIGR00067 glut_race: glutamate racemase 8 249 5.9E-64 T 22-04-2016 IPR004391 Glutamate racemase GO:0008881|GO:0009252 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PP4_RS22870 aeb28492c7cd42ded5e0bc90b20ac341 265 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 182 192 - T 22-04-2016 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PP4_RS22870 aeb28492c7cd42ded5e0bc90b20ac341 265 PANTHER PTHR21198 1 265 7.4E-98 T 22-04-2016 PP4_RS22870 aeb28492c7cd42ded5e0bc90b20ac341 265 Pfam PF01177 Asp/Glu/Hydantoin racemase 8 217 1.6E-33 T 22-04-2016 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PP4_RS03095 ed091af4fd324da67d1b0ac003a31ee0 618 Gene3D G3DSA:3.30.70.270 461 616 4.4E-52 T 22-04-2016 PP4_RS03095 ed091af4fd324da67d1b0ac003a31ee0 618 SUPERFAMILY SSF55073 465 613 7.53E-45 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS03095 ed091af4fd324da67d1b0ac003a31ee0 618 PANTHER PTHR10799:SF774 490 610 2.4E-31 T 22-04-2016 PP4_RS03095 ed091af4fd324da67d1b0ac003a31ee0 618 PANTHER PTHR10799:SF774 178 301 2.4E-31 T 22-04-2016 PP4_RS03095 ed091af4fd324da67d1b0ac003a31ee0 618 Pfam PF00990 Diguanylate cyclase, GGDEF domain 460 611 1.7E-43 T 22-04-2016 IPR000160 GGDEF domain PP4_RS03095 ed091af4fd324da67d1b0ac003a31ee0 618 Pfam PF08448 PAS fold 343 449 1.9E-10 T 22-04-2016 IPR013656 PAS fold-4 PP4_RS03095 ed091af4fd324da67d1b0ac003a31ee0 618 SMART SM00086 407 449 0.0035 T 22-04-2016 IPR001610 PAC motif PP4_RS03095 ed091af4fd324da67d1b0ac003a31ee0 618 SMART SM00091 337 404 1.2E-5 T 22-04-2016 IPR000014 PAS domain PP4_RS03095 ed091af4fd324da67d1b0ac003a31ee0 618 PANTHER PTHR10799 490 610 2.4E-31 T 22-04-2016 PP4_RS03095 ed091af4fd324da67d1b0ac003a31ee0 618 PANTHER PTHR10799 178 301 2.4E-31 T 22-04-2016 PP4_RS03095 ed091af4fd324da67d1b0ac003a31ee0 618 SMART SM00267 449 617 7.9E-57 T 22-04-2016 IPR000160 GGDEF domain PP4_RS03095 ed091af4fd324da67d1b0ac003a31ee0 618 Gene3D G3DSA:3.30.450.20 330 447 1.1E-18 T 22-04-2016 PP4_RS03095 ed091af4fd324da67d1b0ac003a31ee0 618 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 458 610 6.3E-40 T 22-04-2016 IPR000160 GGDEF domain PP4_RS03095 ed091af4fd324da67d1b0ac003a31ee0 618 SUPERFAMILY SSF55785 325 447 1.17E-18 T 22-04-2016 IPR000014 PAS domain PP4_RS03095 ed091af4fd324da67d1b0ac003a31ee0 618 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 333 456 1.3E-14 T 22-04-2016 IPR000014 PAS domain PP4_RS15725 7ce10b0a1a0f420d0043fdd6ad922c7a 312 Gene3D G3DSA:1.10.10.10 2 87 4.2E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS15725 7ce10b0a1a0f420d0043fdd6ad922c7a 312 Gene3D G3DSA:3.40.190.10 91 226 3.0E-16 T 22-04-2016 PP4_RS15725 7ce10b0a1a0f420d0043fdd6ad922c7a 312 PANTHER PTHR30419 1 290 4.4E-41 T 22-04-2016 PP4_RS15725 7ce10b0a1a0f420d0043fdd6ad922c7a 312 Pfam PF03466 LysR substrate binding domain 91 294 6.7E-16 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS15725 7ce10b0a1a0f420d0043fdd6ad922c7a 312 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 2.9E-18 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS15725 7ce10b0a1a0f420d0043fdd6ad922c7a 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.2E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS15725 7ce10b0a1a0f420d0043fdd6ad922c7a 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.2E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS15725 7ce10b0a1a0f420d0043fdd6ad922c7a 312 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.2E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS15725 7ce10b0a1a0f420d0043fdd6ad922c7a 312 SUPERFAMILY SSF53850 94 297 6.27E-19 T 22-04-2016 PP4_RS15725 7ce10b0a1a0f420d0043fdd6ad922c7a 312 SUPERFAMILY SSF46785 2 99 4.3E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS13380 fa1cdb13a713148e990a1cec33432a32 209 PANTHER PTHR33254:SF5 42 200 7.8E-34 T 22-04-2016 PP4_RS13380 fa1cdb13a713148e990a1cec33432a32 209 Pfam PF03737 Demethylmenaquinone methyltransferase 31 163 4.3E-31 T 22-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein PP4_RS13380 fa1cdb13a713148e990a1cec33432a32 209 SUPERFAMILY SSF89562 15 173 2.22E-34 T 22-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein PP4_RS13380 fa1cdb13a713148e990a1cec33432a32 209 Gene3D G3DSA:3.50.30.40 28 170 6.1E-37 T 22-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein PP4_RS13380 fa1cdb13a713148e990a1cec33432a32 209 PANTHER PTHR33254 42 200 7.8E-34 T 22-04-2016 PP4_RS07610 bc3a277d17d0a232c950b98c2873a2ef 219 SMART SM00345 13 71 1.2E-14 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS07610 bc3a277d17d0a232c950b98c2873a2ef 219 Pfam PF07729 FCD domain 102 203 4.2E-8 T 22-04-2016 IPR011711 GntR, C-terminal PP4_RS07610 bc3a277d17d0a232c950b98c2873a2ef 219 Pfam PF00392 Bacterial regulatory proteins, gntR family 9 71 6.6E-15 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS07610 bc3a277d17d0a232c950b98c2873a2ef 219 SUPERFAMILY SSF46785 5 75 5.57E-17 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS07610 bc3a277d17d0a232c950b98c2873a2ef 219 PANTHER PTHR11751 191 212 1.4E-13 T 22-04-2016 PP4_RS07610 bc3a277d17d0a232c950b98c2873a2ef 219 PANTHER PTHR11751 10 78 1.4E-13 T 22-04-2016 PP4_RS07610 bc3a277d17d0a232c950b98c2873a2ef 219 PANTHER PTHR11751:SF426 191 212 1.4E-13 T 22-04-2016 PP4_RS07610 bc3a277d17d0a232c950b98c2873a2ef 219 PANTHER PTHR11751:SF426 10 78 1.4E-13 T 22-04-2016 PP4_RS07610 bc3a277d17d0a232c950b98c2873a2ef 219 Gene3D G3DSA:1.10.10.10 5 72 3.4E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS07610 bc3a277d17d0a232c950b98c2873a2ef 219 Gene3D G3DSA:1.20.120.530 97 218 1.1E-10 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PP4_RS07610 bc3a277d17d0a232c950b98c2873a2ef 219 SUPERFAMILY SSF48008 97 215 2.62E-10 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PP4_RS06735 64e9455dd8d7768f284d453847db4ef3 286 SMART SM00481 3 68 1.1E-18 T 22-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 PP4_RS06735 64e9455dd8d7768f284d453847db4ef3 286 Gene3D G3DSA:3.20.20.140 160 270 2.6E-38 T 22-04-2016 PP4_RS06735 64e9455dd8d7768f284d453847db4ef3 286 Gene3D G3DSA:3.20.20.140 1 86 2.6E-38 T 22-04-2016 PP4_RS06735 64e9455dd8d7768f284d453847db4ef3 286 PANTHER PTHR30007:SF4 1 282 7.6E-78 T 22-04-2016 PP4_RS06735 64e9455dd8d7768f284d453847db4ef3 286 Pfam PF02811 PHP domain 4 69 1.0E-8 T 22-04-2016 IPR004013 PHP domain GO:0003824 PP4_RS06735 64e9455dd8d7768f284d453847db4ef3 286 SUPERFAMILY SSF89550 168 278 1.67E-46 T 22-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 PP4_RS06735 64e9455dd8d7768f284d453847db4ef3 286 SUPERFAMILY SSF89550 1 81 1.67E-46 T 22-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 PP4_RS06735 64e9455dd8d7768f284d453847db4ef3 286 PANTHER PTHR30007 1 282 7.6E-78 T 22-04-2016 PP4_RS22670 c50d85111dc1defe632655abd7b5a524 160 PIRSF PIRSF000303 1 160 6.1E-59 T 22-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 PP4_RS22670 c50d85111dc1defe632655abd7b5a524 160 Gene3D G3DSA:3.40.30.10 4 159 7.1E-60 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS22670 c50d85111dc1defe632655abd7b5a524 160 PRINTS PR01011 Glutathione peroxidase family signature 22 39 3.7E-19 T 22-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 PP4_RS22670 c50d85111dc1defe632655abd7b5a524 160 PRINTS PR01011 Glutathione peroxidase family signature 57 73 3.7E-19 T 22-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 PP4_RS22670 c50d85111dc1defe632655abd7b5a524 160 PRINTS PR01011 Glutathione peroxidase family signature 121 130 3.7E-19 T 22-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 PP4_RS22670 c50d85111dc1defe632655abd7b5a524 160 PANTHER PTHR11592:SF40 4 160 6.1E-78 T 22-04-2016 PP4_RS22670 c50d85111dc1defe632655abd7b5a524 160 ProSitePatterns PS00460 Glutathione peroxidases active site. 24 39 - T 22-04-2016 IPR029759 Glutathione peroxidase active site PP4_RS22670 c50d85111dc1defe632655abd7b5a524 160 PANTHER PTHR11592 4 160 6.1E-78 T 22-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 PP4_RS22670 c50d85111dc1defe632655abd7b5a524 160 SUPERFAMILY SSF52833 4 159 1.64E-54 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS22670 c50d85111dc1defe632655abd7b5a524 160 Pfam PF00255 Glutathione peroxidase 4 110 1.3E-37 T 22-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 PP4_RS03900 e05ced63eb0478a7156c8504c54a7095 774 Gene3D G3DSA:2.170.130.10 132 247 1.4E-30 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS03900 e05ced63eb0478a7156c8504c54a7095 774 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 134 774 1.8E-121 T 22-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 PP4_RS03900 e05ced63eb0478a7156c8504c54a7095 774 Pfam PF07715 TonB-dependent Receptor Plug Domain 134 246 2.2E-19 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS03900 e05ced63eb0478a7156c8504c54a7095 774 Pfam PF00593 TonB dependent receptor 525 771 2.2E-29 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS03900 e05ced63eb0478a7156c8504c54a7095 774 Pfam PF07660 Secretin and TonB N terminus short domain 54 101 1.2E-7 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS03900 e05ced63eb0478a7156c8504c54a7095 774 SMART SM00965 52 103 5.3E-10 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS03900 e05ced63eb0478a7156c8504c54a7095 774 PANTHER PTHR30442 21 771 4.9E-137 T 22-04-2016 PP4_RS03900 e05ced63eb0478a7156c8504c54a7095 774 SUPERFAMILY SSF56935 119 774 3.86E-115 T 22-04-2016 PP4_RS03900 e05ced63eb0478a7156c8504c54a7095 774 Gene3D G3DSA:2.40.170.20 248 774 3.2E-115 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS03900 e05ced63eb0478a7156c8504c54a7095 774 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 757 774 - T 22-04-2016 IPR010917 TonB-dependent receptor, conserved site PP4_RS08705 e36df0e3924036bb4b7c08060f77cdf2 519 Gene3D G3DSA:3.40.50.2000 295 487 1.5E-63 T 22-04-2016 PP4_RS08705 e36df0e3924036bb4b7c08060f77cdf2 519 Hamap MF_00484 Glycogen synthase [glgA]. 43 510 40.27 T 22-04-2016 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622|UniPathway: UPA00164 PP4_RS08705 e36df0e3924036bb4b7c08060f77cdf2 519 Pfam PF08323 Starch synthase catalytic domain 44 278 4.5E-71 T 22-04-2016 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622|UniPathway: UPA00164 PP4_RS08705 e36df0e3924036bb4b7c08060f77cdf2 519 PANTHER PTHR12526:SF295 44 512 3.2E-187 T 22-04-2016 PP4_RS08705 e36df0e3924036bb4b7c08060f77cdf2 519 SUPERFAMILY SSF53756 43 513 1.63E-108 T 22-04-2016 PP4_RS08705 e36df0e3924036bb4b7c08060f77cdf2 519 PANTHER PTHR12526 44 512 3.2E-187 T 22-04-2016 PP4_RS08705 e36df0e3924036bb4b7c08060f77cdf2 519 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 44 509 4.6E-147 T 22-04-2016 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622|UniPathway: UPA00164 PP4_RS08705 e36df0e3924036bb4b7c08060f77cdf2 519 Pfam PF00534 Glycosyl transferases group 1 332 470 2.2E-14 T 22-04-2016 IPR001296 Glycosyl transferase, family 1 PP4_RS07335 442c853ced8a74e78811698dd34dcf4f 159 PANTHER PTHR22617:SF26 9 159 3.9E-112 T 22-04-2016 PP4_RS07335 442c853ced8a74e78811698dd34dcf4f 159 Pfam PF01584 CheW-like domain 15 151 2.0E-39 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS07335 442c853ced8a74e78811698dd34dcf4f 159 PANTHER PTHR22617 9 159 3.9E-112 T 22-04-2016 PP4_RS07335 442c853ced8a74e78811698dd34dcf4f 159 SUPERFAMILY SSF50341 11 154 1.27E-41 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS07335 442c853ced8a74e78811698dd34dcf4f 159 SMART SM00260 11 148 5.0E-53 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS07335 442c853ced8a74e78811698dd34dcf4f 159 Gene3D G3DSA:2.30.30.40 90 141 3.4E-8 T 22-04-2016 PP4_RS07335 442c853ced8a74e78811698dd34dcf4f 159 Gene3D G3DSA:2.40.50.180 54 89 6.2E-10 T 22-04-2016 PP4_RS09990 c48dca5606eb147508a673a3dbfa3dcc 391 SUPERFAMILY SSF103473 6 381 2.88E-52 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS09990 c48dca5606eb147508a673a3dbfa3dcc 391 Gene3D G3DSA:1.20.1250.20 203 379 3.2E-11 T 22-04-2016 PP4_RS09990 c48dca5606eb147508a673a3dbfa3dcc 391 PANTHER PTHR23501 1 389 9.7E-141 T 22-04-2016 PP4_RS09990 c48dca5606eb147508a673a3dbfa3dcc 391 Pfam PF07690 Major Facilitator Superfamily 10 320 1.9E-34 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS09990 c48dca5606eb147508a673a3dbfa3dcc 391 PANTHER PTHR23501:SF4 1 389 9.7E-141 T 22-04-2016 PP4_RS09990 c48dca5606eb147508a673a3dbfa3dcc 391 Gene3D G3DSA:1.20.1250.20 5 187 1.8E-26 T 22-04-2016 PP4_RS00590 e0e9a8767b9c85e602dc6af68962a3f8 210 PANTHER PTHR35891 1 210 4.7E-78 T 22-04-2016 PP4_RS00590 e0e9a8767b9c85e602dc6af68962a3f8 210 PANTHER PTHR35891:SF2 1 210 4.7E-78 T 22-04-2016 PP4_RS00590 e0e9a8767b9c85e602dc6af68962a3f8 210 ProSitePatterns PS00194 Thioredoxin family active site. 49 67 - T 22-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 PP4_RS00590 e0e9a8767b9c85e602dc6af68962a3f8 210 PIRSF PIRSF001488 1 210 3.4E-73 T 22-04-2016 IPR023205 Thiol:disulphide interchange protein DsbA/DsbL PP4_RS00590 e0e9a8767b9c85e602dc6af68962a3f8 210 Gene3D G3DSA:3.40.30.10 22 205 5.2E-64 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS00590 e0e9a8767b9c85e602dc6af68962a3f8 210 SUPERFAMILY SSF52833 25 203 1.21E-46 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS00590 e0e9a8767b9c85e602dc6af68962a3f8 210 Pfam PF01323 DSBA-like thioredoxin domain 70 183 1.4E-16 T 22-04-2016 IPR001853 DSBA-like thioredoxin domain GO:0015035 PP4_RS21500 3852daa626f10377530906405ee5e587 482 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 305 319 - T 22-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 PP4_RS21500 3852daa626f10377530906405ee5e587 482 PANTHER PTHR30258 2 481 1.1E-206 T 22-04-2016 PP4_RS21500 3852daa626f10377530906405ee5e587 482 SUPERFAMILY SSF52540 89 480 7.43E-92 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS21500 3852daa626f10377530906405ee5e587 482 Pfam PF00437 Type II/IV secretion system protein 118 377 8.7E-82 T 22-04-2016 IPR001482 Type II secretion system protein E GO:0005524|GO:0006810 PP4_RS21500 3852daa626f10377530906405ee5e587 482 PANTHER PTHR30258:SF9 2 481 1.1E-206 T 22-04-2016 PP4_RS21500 3852daa626f10377530906405ee5e587 482 Gene3D G3DSA:3.30.450.90 81 210 1.7E-50 T 22-04-2016 PP4_RS21500 3852daa626f10377530906405ee5e587 482 Gene3D G3DSA:3.40.50.300 214 480 5.1E-87 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS21500 3852daa626f10377530906405ee5e587 482 SUPERFAMILY SSF160246 2 64 3.4E-10 T 22-04-2016 PP4_RS06675 0754929c97e47683ecb75ed56f5aaff1 296 SUPERFAMILY SSF103481 42 137 7.32E-10 T 22-04-2016 PP4_RS06675 0754929c97e47683ecb75ed56f5aaff1 296 SUPERFAMILY SSF103481 183 280 3.79E-14 T 22-04-2016 PP4_RS06675 0754929c97e47683ecb75ed56f5aaff1 296 Pfam PF00892 EamA-like transporter family 149 279 2.1E-16 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS06675 0754929c97e47683ecb75ed56f5aaff1 296 Pfam PF00892 EamA-like transporter family 12 136 4.1E-13 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS06675 0754929c97e47683ecb75ed56f5aaff1 296 PANTHER PTHR22911:SF23 1 281 2.4E-48 T 22-04-2016 PP4_RS06675 0754929c97e47683ecb75ed56f5aaff1 296 PANTHER PTHR22911 1 281 2.4E-48 T 22-04-2016 PP4_RS08295 02a12fd1e67221752f1225217cb9230d 510 TIGRFAM TIGR01972 NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M 3 497 1.2E-172 T 22-04-2016 IPR010227 NADH-quinone oxidoreductase, chain M/4 GO:0008137|GO:0042773|GO:0055114 PP4_RS08295 02a12fd1e67221752f1225217cb9230d 510 PANTHER PTHR22773:SF40 1 498 1.3E-182 T 22-04-2016 PP4_RS08295 02a12fd1e67221752f1225217cb9230d 510 PANTHER PTHR22773 1 498 1.3E-182 T 22-04-2016 PP4_RS08295 02a12fd1e67221752f1225217cb9230d 510 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 140 159 3.4E-37 T 22-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 PP4_RS08295 02a12fd1e67221752f1225217cb9230d 510 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 339 358 3.4E-37 T 22-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 PP4_RS08295 02a12fd1e67221752f1225217cb9230d 510 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 176 200 3.4E-37 T 22-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 PP4_RS08295 02a12fd1e67221752f1225217cb9230d 510 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 251 275 3.4E-37 T 22-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 PP4_RS08295 02a12fd1e67221752f1225217cb9230d 510 PRINTS PR01437 NADH-ubiquinone oxidoreductase subunit 4 signature 391 417 3.4E-37 T 22-04-2016 IPR003918 NADH:ubiquinone oxidoreductase GO:0008137|GO:0042773|GO:0055114 PP4_RS08295 02a12fd1e67221752f1225217cb9230d 510 Pfam PF00361 Proton-conducting membrane transporter 134 433 1.8E-70 T 22-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 PP4_RS10915 e9b172a8146eb30f8022e8d787ddc0db 288 Pfam PF01261 Xylose isomerase-like TIM barrel 37 235 1.4E-17 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PP4_RS10915 e9b172a8146eb30f8022e8d787ddc0db 288 Gene3D G3DSA:3.20.20.150 30 282 2.5E-40 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PP4_RS10915 e9b172a8146eb30f8022e8d787ddc0db 288 PANTHER PTHR12110 30 278 6.9E-26 T 22-04-2016 PP4_RS10915 e9b172a8146eb30f8022e8d787ddc0db 288 SUPERFAMILY SSF51658 27 281 8.64E-58 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PP4_RS15835 55c0591eb897adf31347648f38ede816 469 Pfam PF14403 Circularly permuted ATP-grasp type 2 72 445 4.7E-162 T 22-04-2016 IPR025841 Circularly permuted ATP-grasp type 2 PP4_RS15835 55c0591eb897adf31347648f38ede816 469 PANTHER PTHR34595 3 469 9.2E-295 T 22-04-2016 PP4_RS15835 55c0591eb897adf31347648f38ede816 469 SUPERFAMILY SSF56059 315 460 2.12E-65 T 22-04-2016 PP4_RS15835 55c0591eb897adf31347648f38ede816 469 SUPERFAMILY SSF56059 15 210 2.12E-65 T 22-04-2016 PP4_RS15835 55c0591eb897adf31347648f38ede816 469 PIRSF PIRSF005522 1 469 1.0E-230 T 22-04-2016 IPR016450 Uncharacterised conserved protein UCP005522 PP4_RS15835 55c0591eb897adf31347648f38ede816 469 PANTHER PTHR34595:SF3 3 469 9.2E-295 T 22-04-2016 PP4_RS05420 77a1fcca331d07501a7da47486d10fa6 714 Pfam PF13307 Helicase C-terminal domain 553 708 1.4E-33 T 22-04-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 PP4_RS05420 77a1fcca331d07501a7da47486d10fa6 714 PANTHER PTHR11472 1 712 1.2E-295 T 22-04-2016 PP4_RS05420 77a1fcca331d07501a7da47486d10fa6 714 Gene3D G3DSA:3.40.50.300 227 276 3.3E-13 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS05420 77a1fcca331d07501a7da47486d10fa6 714 Gene3D G3DSA:3.40.50.300 56 152 3.3E-13 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS05420 77a1fcca331d07501a7da47486d10fa6 714 SUPERFAMILY SSF52540 210 286 2.9E-16 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS05420 77a1fcca331d07501a7da47486d10fa6 714 SUPERFAMILY SSF52540 519 689 2.9E-16 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS05420 77a1fcca331d07501a7da47486d10fa6 714 SUPERFAMILY SSF52540 475 489 2.9E-16 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS05420 77a1fcca331d07501a7da47486d10fa6 714 SUPERFAMILY SSF52540 57 105 2.9E-16 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS05420 77a1fcca331d07501a7da47486d10fa6 714 Gene3D G3DSA:3.40.50.300 538 691 9.7E-9 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS05420 77a1fcca331d07501a7da47486d10fa6 714 PANTHER PTHR11472:SF32 1 712 1.2E-295 T 22-04-2016 PP4_RS05420 77a1fcca331d07501a7da47486d10fa6 714 SMART SM00491 562 695 9.6E-31 T 22-04-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 PP4_RS10120 f45a6c84c452daa897b6c034306857e5 967 Gene3D G3DSA:3.30.1360.120 722 832 6.3E-26 T 22-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 PP4_RS10120 f45a6c84c452daa897b6c034306857e5 967 PANTHER PTHR13847 588 867 3.1E-42 T 22-04-2016 PP4_RS10120 f45a6c84c452daa897b6c034306857e5 967 PANTHER PTHR13847 116 216 3.1E-42 T 22-04-2016 PP4_RS10120 f45a6c84c452daa897b6c034306857e5 967 SUPERFAMILY SSF51905 167 455 9.97E-33 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS10120 f45a6c84c452daa897b6c034306857e5 967 SUPERFAMILY SSF101790 879 965 1.28E-15 T 22-04-2016 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal domain PP4_RS10120 f45a6c84c452daa897b6c034306857e5 967 SUPERFAMILY SSF103025 586 870 1.22E-88 T 22-04-2016 PP4_RS10120 f45a6c84c452daa897b6c034306857e5 967 Gene3D G3DSA:2.40.30.110 878 953 3.5E-14 T 22-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 PP4_RS10120 f45a6c84c452daa897b6c034306857e5 967 Gene3D G3DSA:3.50.50.60 167 229 1.9E-24 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS10120 f45a6c84c452daa897b6c034306857e5 967 Gene3D G3DSA:3.50.50.60 305 467 1.9E-24 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS10120 f45a6c84c452daa897b6c034306857e5 967 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 19 99 1.2E-21 T 22-04-2016 PP4_RS10120 f45a6c84c452daa897b6c034306857e5 967 Pfam PF01571 Aminomethyltransferase folate-binding domain 592 855 5.7E-77 T 22-04-2016 IPR006222 Glycine cleavage T-protein-like, N-terminal PP4_RS10120 f45a6c84c452daa897b6c034306857e5 967 Gene3D G3DSA:3.30.70.1400 644 721 9.6E-23 T 22-04-2016 PP4_RS10120 f45a6c84c452daa897b6c034306857e5 967 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 168 420 1.4E-14 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS10120 f45a6c84c452daa897b6c034306857e5 967 PANTHER PTHR13847:SF189 588 867 3.1E-42 T 22-04-2016 PP4_RS10120 f45a6c84c452daa897b6c034306857e5 967 PANTHER PTHR13847:SF189 116 216 3.1E-42 T 22-04-2016 PP4_RS10120 f45a6c84c452daa897b6c034306857e5 967 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 863 954 1.2E-12 T 22-04-2016 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 PP4_RS27350 586af97d13e256bdbde77ea9f26d4b8f 611 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 611 6.4E-262 T 22-04-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 PP4_RS27350 586af97d13e256bdbde77ea9f26d4b8f 611 SUPERFAMILY SSF56235 2 236 4.72E-76 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PP4_RS27350 586af97d13e256bdbde77ea9f26d4b8f 611 Gene3D G3DSA:3.60.20.10 2 236 2.5E-80 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PP4_RS27350 586af97d13e256bdbde77ea9f26d4b8f 611 PANTHER PTHR10937:SF0 1 611 0.0 T 22-04-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 PP4_RS27350 586af97d13e256bdbde77ea9f26d4b8f 611 Gene3D G3DSA:3.40.50.10490 445 611 3.6E-67 T 22-04-2016 PP4_RS27350 586af97d13e256bdbde77ea9f26d4b8f 611 SUPERFAMILY SSF53697 246 611 1.48E-118 T 22-04-2016 PP4_RS27350 586af97d13e256bdbde77ea9f26d4b8f 611 PANTHER PTHR10937 1 611 0.0 T 22-04-2016 PP4_RS27350 586af97d13e256bdbde77ea9f26d4b8f 611 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 611 41.504 T 22-04-2016 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: REACT_17015 PP4_RS27350 586af97d13e256bdbde77ea9f26d4b8f 611 Pfam PF01380 SIS domain 464 593 6.0E-27 T 22-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 PP4_RS27350 586af97d13e256bdbde77ea9f26d4b8f 611 Pfam PF01380 SIS domain 291 419 2.2E-32 T 22-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 PP4_RS27350 586af97d13e256bdbde77ea9f26d4b8f 611 Pfam PF13522 Glutamine amidotransferase domain 65 182 3.4E-21 T 22-04-2016 PP4_RS27350 586af97d13e256bdbde77ea9f26d4b8f 611 Gene3D G3DSA:3.40.50.10490 245 444 2.1E-70 T 22-04-2016 PP4_RS09155 97dacc781e26c810301dc081f447239d 339 Pfam PF01343 Peptidase family S49 152 299 2.3E-44 T 22-04-2016 IPR002142 Peptidase S49 GO:0006508|GO:0008233 PP4_RS09155 97dacc781e26c810301dc081f447239d 339 PANTHER PTHR33209 2 337 2.5E-176 T 22-04-2016 PP4_RS09155 97dacc781e26c810301dc081f447239d 339 Gene3D G3DSA:3.90.226.10 262 301 1.0E-32 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS09155 97dacc781e26c810301dc081f447239d 339 Gene3D G3DSA:3.90.226.10 89 196 1.0E-32 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS09155 97dacc781e26c810301dc081f447239d 339 PANTHER PTHR33209:SF2 2 337 2.5E-176 T 22-04-2016 PP4_RS09155 97dacc781e26c810301dc081f447239d 339 SUPERFAMILY SSF52096 90 200 9.75E-28 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS09155 97dacc781e26c810301dc081f447239d 339 SUPERFAMILY SSF52096 231 290 9.75E-28 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS09155 97dacc781e26c810301dc081f447239d 339 Pfam PF08496 Peptidase family S49 N-terminal 2 149 1.5E-54 T 22-04-2016 IPR013703 Peptidase S49, N-terminal proteobacteria GO:0004252|GO:0005886 PP4_RS18045 17abae8f31d6e73c920ce379b865fde5 182 PANTHER PTHR11080:SF35 4 181 5.5E-53 T 22-04-2016 PP4_RS18045 17abae8f31d6e73c920ce379b865fde5 182 PANTHER PTHR11080 4 181 5.5E-53 T 22-04-2016 PP4_RS18045 17abae8f31d6e73c920ce379b865fde5 182 Gene3D G3DSA:3.40.50.850 1 181 4.8E-55 T 22-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PP4_RS18045 17abae8f31d6e73c920ce379b865fde5 182 Pfam PF00857 Isochorismatase family 5 177 2.9E-39 T 22-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PP4_RS18045 17abae8f31d6e73c920ce379b865fde5 182 SUPERFAMILY SSF52499 2 181 3.92E-54 T 22-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PP4_RS19040 afb061b30f8dcddd62c9cd5581a0a046 1026 Pfam PF00873 AcrB/AcrD/AcrF family 4 1002 8.4E-268 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS19040 afb061b30f8dcddd62c9cd5581a0a046 1026 Gene3D G3DSA:3.30.2090.10 699 783 1.7E-16 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS19040 afb061b30f8dcddd62c9cd5581a0a046 1026 SUPERFAMILY SSF82693 43 129 1.5E-21 T 22-04-2016 PP4_RS19040 afb061b30f8dcddd62c9cd5581a0a046 1026 PANTHER PTHR32063 1 1023 0.0 T 22-04-2016 PP4_RS19040 afb061b30f8dcddd62c9cd5581a0a046 1026 SUPERFAMILY SSF82714 699 783 1.44E-16 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS19040 afb061b30f8dcddd62c9cd5581a0a046 1026 PANTHER PTHR32063:SF28 1 1023 0.0 T 22-04-2016 PP4_RS19040 afb061b30f8dcddd62c9cd5581a0a046 1026 SUPERFAMILY SSF82714 183 264 1.31E-16 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS19040 afb061b30f8dcddd62c9cd5581a0a046 1026 SUPERFAMILY SSF82693 267 322 8.5E-21 T 22-04-2016 PP4_RS19040 afb061b30f8dcddd62c9cd5581a0a046 1026 SUPERFAMILY SSF82693 137 181 8.5E-21 T 22-04-2016 PP4_RS19040 afb061b30f8dcddd62c9cd5581a0a046 1026 Gene3D G3DSA:3.30.70.1430 557 650 1.6E-10 T 22-04-2016 PP4_RS19040 afb061b30f8dcddd62c9cd5581a0a046 1026 Gene3D G3DSA:1.10.3850.10 793 1005 2.8E-57 T 22-04-2016 PP4_RS19040 afb061b30f8dcddd62c9cd5581a0a046 1026 Gene3D G3DSA:1.10.3850.10 274 490 1.7E-57 T 22-04-2016 PP4_RS19040 afb061b30f8dcddd62c9cd5581a0a046 1026 SUPERFAMILY SSF82866 297 489 6.41E-49 T 22-04-2016 PP4_RS19040 afb061b30f8dcddd62c9cd5581a0a046 1026 Gene3D G3DSA:3.30.2090.10 183 266 5.0E-19 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS19040 afb061b30f8dcddd62c9cd5581a0a046 1026 SUPERFAMILY SSF82866 783 1005 9.81E-43 T 22-04-2016 PP4_RS19040 afb061b30f8dcddd62c9cd5581a0a046 1026 PRINTS PR00702 Acriflavin resistance protein family signature 540 557 9.3E-70 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS19040 afb061b30f8dcddd62c9cd5581a0a046 1026 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 9.3E-70 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS19040 afb061b30f8dcddd62c9cd5581a0a046 1026 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 9.3E-70 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS19040 afb061b30f8dcddd62c9cd5581a0a046 1026 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 9.3E-70 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS19040 afb061b30f8dcddd62c9cd5581a0a046 1026 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 9.3E-70 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS19040 afb061b30f8dcddd62c9cd5581a0a046 1026 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 9.3E-70 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS19040 afb061b30f8dcddd62c9cd5581a0a046 1026 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 9.3E-70 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS19040 afb061b30f8dcddd62c9cd5581a0a046 1026 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 9.3E-70 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS19040 afb061b30f8dcddd62c9cd5581a0a046 1026 Gene3D G3DSA:3.30.70.1430 43 140 7.7E-25 T 22-04-2016 PP4_RS19040 afb061b30f8dcddd62c9cd5581a0a046 1026 SUPERFAMILY SSF82693 553 650 1.31E-14 T 22-04-2016 PP4_RS19155 9c411787d3d8f9f63e3728031ad45ad9 1214 Pfam PF13476 AAA domain 6 247 5.1E-23 T 22-04-2016 PP4_RS19155 9c411787d3d8f9f63e3728031ad45ad9 1214 Gene3D G3DSA:3.40.50.300 1 178 3.8E-23 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS19155 9c411787d3d8f9f63e3728031ad45ad9 1214 PANTHER PTHR32114 804 1214 2.9E-127 T 22-04-2016 IPR027050 Nuclease SbcCD subunit C GO:0004518|GO:0006281 PP4_RS19155 9c411787d3d8f9f63e3728031ad45ad9 1214 PANTHER PTHR32114 2 736 2.9E-127 T 22-04-2016 IPR027050 Nuclease SbcCD subunit C GO:0004518|GO:0006281 PP4_RS19155 9c411787d3d8f9f63e3728031ad45ad9 1214 SUPERFAMILY SSF52540 462 587 1.17E-8 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS19155 9c411787d3d8f9f63e3728031ad45ad9 1214 SUPERFAMILY SSF52540 1 58 1.17E-8 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS19155 9c411787d3d8f9f63e3728031ad45ad9 1214 SUPERFAMILY SSF52540 1 197 7.8E-31 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS19155 9c411787d3d8f9f63e3728031ad45ad9 1214 SUPERFAMILY SSF52540 803 855 7.8E-31 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS19155 9c411787d3d8f9f63e3728031ad45ad9 1214 SUPERFAMILY SSF52540 1062 1207 7.8E-31 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS19155 9c411787d3d8f9f63e3728031ad45ad9 1214 SUPERFAMILY SSF52540 230 266 7.8E-31 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS19155 9c411787d3d8f9f63e3728031ad45ad9 1214 Pfam PF13558 Putative exonuclease SbcCD, C subunit 1112 1172 3.6E-12 T 22-04-2016 PP4_RS19155 9c411787d3d8f9f63e3728031ad45ad9 1214 PANTHER PTHR32114:SF2 804 1214 2.9E-127 T 22-04-2016 PP4_RS19155 9c411787d3d8f9f63e3728031ad45ad9 1214 PANTHER PTHR32114:SF2 2 736 2.9E-127 T 22-04-2016 PP4_RS19155 9c411787d3d8f9f63e3728031ad45ad9 1214 Gene3D G3DSA:3.40.50.300 1112 1200 1.6E-9 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS00995 63a41a4f630d63294de2745c892afdf9 636 PANTHER PTHR19211 1 554 0.0 T 22-04-2016 PP4_RS00995 63a41a4f630d63294de2745c892afdf9 636 Pfam PF12848 ABC transporter 217 294 2.5E-27 T 22-04-2016 IPR032781 ABC-transporter extension domain PP4_RS00995 63a41a4f630d63294de2745c892afdf9 636 SUPERFAMILY SSF52540 119 258 8.46E-46 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS00995 63a41a4f630d63294de2745c892afdf9 636 SUPERFAMILY SSF52540 2 92 8.46E-46 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS00995 63a41a4f630d63294de2745c892afdf9 636 SUPERFAMILY SSF52540 296 522 3.63E-44 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS00995 63a41a4f630d63294de2745c892afdf9 636 Pfam PF00005 ABC transporter 328 459 1.9E-22 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS00995 63a41a4f630d63294de2745c892afdf9 636 Pfam PF00005 ABC transporter 17 178 1.7E-21 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS00995 63a41a4f630d63294de2745c892afdf9 636 Gene3D G3DSA:3.40.50.300 311 530 1.2E-41 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS00995 63a41a4f630d63294de2745c892afdf9 636 Gene3D G3DSA:3.40.50.300 1 266 9.2E-48 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS00995 63a41a4f630d63294de2745c892afdf9 636 ProSitePatterns PS00211 ABC transporters family signature. 431 445 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS00995 63a41a4f630d63294de2745c892afdf9 636 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS00995 63a41a4f630d63294de2745c892afdf9 636 PANTHER PTHR19211:SF49 1 554 0.0 T 22-04-2016 PP4_RS00995 63a41a4f630d63294de2745c892afdf9 636 SMART SM00382 26 224 2.4E-6 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS00995 63a41a4f630d63294de2745c892afdf9 636 SMART SM00382 337 506 4.9E-16 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS26505 f36e2c1c7d9718b516d006aa5fd4b1d7 156 PANTHER PTHR30154:SF17 1 154 6.0E-84 T 22-04-2016 PP4_RS26505 f36e2c1c7d9718b516d006aa5fd4b1d7 156 Pfam PF01037 Lrp/AsnC ligand binding domain 72 145 2.4E-20 T 22-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PP4_RS26505 f36e2c1c7d9718b516d006aa5fd4b1d7 156 Gene3D G3DSA:1.10.10.10 1 55 8.3E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS26505 f36e2c1c7d9718b516d006aa5fd4b1d7 156 ProSitePatterns PS00519 AsnC-type HTH domain signature. 23 49 - T 22-04-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PP4_RS26505 f36e2c1c7d9718b516d006aa5fd4b1d7 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 5 21 9.64E-15 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS26505 f36e2c1c7d9718b516d006aa5fd4b1d7 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 21 32 9.64E-15 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS26505 f36e2c1c7d9718b516d006aa5fd4b1d7 156 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 32 51 9.64E-15 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS26505 f36e2c1c7d9718b516d006aa5fd4b1d7 156 SUPERFAMILY SSF54909 65 154 8.85E-21 T 22-04-2016 IPR011008 Dimeric alpha-beta barrel PP4_RS26505 f36e2c1c7d9718b516d006aa5fd4b1d7 156 SUPERFAMILY SSF46785 5 64 2.82E-17 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS26505 f36e2c1c7d9718b516d006aa5fd4b1d7 156 PANTHER PTHR30154 1 154 6.0E-84 T 22-04-2016 PP4_RS26505 f36e2c1c7d9718b516d006aa5fd4b1d7 156 Gene3D G3DSA:3.30.70.920 58 154 4.2E-30 T 22-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PP4_RS26505 f36e2c1c7d9718b516d006aa5fd4b1d7 156 Pfam PF13412 Winged helix-turn-helix DNA-binding 5 52 5.9E-20 T 22-04-2016 PP4_RS26505 f36e2c1c7d9718b516d006aa5fd4b1d7 156 SMART SM00344 5 114 3.3E-41 T 22-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 PP4_RS05205 58b8e3ea56cfc8d5035c804a33452e94 111 PIRSF PIRSF005894 1 107 1.8E-48 T 22-04-2016 IPR014434 Monothiol glutaredoxin PP4_RS05205 58b8e3ea56cfc8d5035c804a33452e94 111 Gene3D G3DSA:3.40.30.10 7 101 1.5E-29 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS05205 58b8e3ea56cfc8d5035c804a33452e94 111 PANTHER PTHR10293 1 111 5.5E-53 T 22-04-2016 IPR004480 Monothiol glutaredoxin-related PP4_RS05205 58b8e3ea56cfc8d5035c804a33452e94 111 Pfam PF00462 Glutaredoxin 16 80 9.6E-17 T 22-04-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 PP4_RS05205 58b8e3ea56cfc8d5035c804a33452e94 111 SUPERFAMILY SSF52833 1 103 1.28E-31 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS05205 58b8e3ea56cfc8d5035c804a33452e94 111 TIGRFAM TIGR00365 TIGR00365: monothiol glutaredoxin, Grx4 family 4 100 7.0E-45 T 22-04-2016 IPR004480 Monothiol glutaredoxin-related PP4_RS15685 5eb247cc1820db85767c09391cb24575 3172 TIGRFAM TIGR01451 B_ant_repeat: conserved repeat domain 1354 1384 1.5E-6 T 22-04-2016 IPR001434 Domain of unknown function DUF11 PP4_RS15685 5eb247cc1820db85767c09391cb24575 3172 SUPERFAMILY SSF49478 1884 1973 9.42E-5 T 22-04-2016 PP4_RS15685 5eb247cc1820db85767c09391cb24575 3172 Pfam PF14252 Domain of unknown function (DUF4347) 74 237 6.0E-48 T 22-04-2016 IPR025592 Domain of unknown function DUF4347 PP4_RS15685 5eb247cc1820db85767c09391cb24575 3172 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 3056 3138 7.1E-14 T 22-04-2016 IPR010221 VCBS repeat PP4_RS15685 5eb247cc1820db85767c09391cb24575 3172 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 2219 2300 7.4E-13 T 22-04-2016 IPR010221 VCBS repeat PP4_RS15685 5eb247cc1820db85767c09391cb24575 3172 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 2514 2589 3.3E-12 T 22-04-2016 IPR010221 VCBS repeat PP4_RS15685 5eb247cc1820db85767c09391cb24575 3172 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 2636 2716 9.7E-14 T 22-04-2016 IPR010221 VCBS repeat PP4_RS15685 5eb247cc1820db85767c09391cb24575 3172 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 2933 3008 9.3E-12 T 22-04-2016 IPR010221 VCBS repeat PP4_RS15685 5eb247cc1820db85767c09391cb24575 3172 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 2777 2850 1.6E-15 T 22-04-2016 IPR010221 VCBS repeat PP4_RS15685 5eb247cc1820db85767c09391cb24575 3172 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 2358 2430 1.0E-15 T 22-04-2016 IPR010221 VCBS repeat PP4_RS15685 5eb247cc1820db85767c09391cb24575 3172 Gene3D G3DSA:2.60.40.10 1889 1959 2.1E-6 T 22-04-2016 IPR013783 Immunoglobulin-like fold PP4_RS25895 0b06cb2f80d890c47252270a66ba04ed 115 Pfam PF04076 Bacterial OB fold (BOF) protein 16 112 2.8E-25 T 22-04-2016 IPR005220 Bacterial OB-fold PP4_RS25895 0b06cb2f80d890c47252270a66ba04ed 115 PANTHER PTHR36571:SF1 9 115 7.9E-32 T 22-04-2016 PP4_RS25895 0b06cb2f80d890c47252270a66ba04ed 115 SUPERFAMILY SSF101756 11 113 1.29E-27 T 22-04-2016 IPR005220 Bacterial OB-fold PP4_RS25895 0b06cb2f80d890c47252270a66ba04ed 115 Gene3D G3DSA:2.40.50.200 9 115 6.5E-33 T 22-04-2016 IPR005220 Bacterial OB-fold PP4_RS25895 0b06cb2f80d890c47252270a66ba04ed 115 PANTHER PTHR36571 9 115 7.9E-32 T 22-04-2016 PP4_RS24750 f98a8242d5f04f2b79d91e58d00be4e7 468 PANTHER PTHR11785:SF336 9 459 6.5E-208 T 22-04-2016 PP4_RS24750 f98a8242d5f04f2b79d91e58d00be4e7 468 Pfam PF00324 Amino acid permease 22 460 1.1E-114 T 22-04-2016 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 PP4_RS24750 f98a8242d5f04f2b79d91e58d00be4e7 468 ProSitePatterns PS00218 Amino acid permeases signature. 47 77 - T 22-04-2016 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 PP4_RS24750 f98a8242d5f04f2b79d91e58d00be4e7 468 PANTHER PTHR11785 9 459 6.5E-208 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS24750 f98a8242d5f04f2b79d91e58d00be4e7 468 PIRSF PIRSF006060 2 464 2.4E-70 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS25500 826dd092bf449ca36c6821c5f07c42e3 133 PANTHER PTHR26402 5 122 5.3E-78 T 22-04-2016 PP4_RS25500 826dd092bf449ca36c6821c5f07c42e3 133 Gene3D G3DSA:3.40.50.2300 3 122 1.2E-34 T 22-04-2016 PP4_RS25500 826dd092bf449ca36c6821c5f07c42e3 133 PANTHER PTHR26402:SF568 5 122 5.3E-78 T 22-04-2016 PP4_RS25500 826dd092bf449ca36c6821c5f07c42e3 133 Pfam PF00072 Response regulator receiver domain 7 119 1.6E-24 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS25500 826dd092bf449ca36c6821c5f07c42e3 133 SUPERFAMILY SSF52172 3 125 6.97E-36 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS25500 826dd092bf449ca36c6821c5f07c42e3 133 SMART SM00448 5 118 9.7E-34 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS11610 bcf12352f79066a9d8b543a642e007c7 467 Pfam PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase 348 464 8.6E-26 T 22-04-2016 IPR032879 FixG, C-terminal immunoglobulin-like domain PP4_RS11610 bcf12352f79066a9d8b543a642e007c7 467 Gene3D G3DSA:3.30.70.20 207 301 3.9E-9 T 22-04-2016 PP4_RS11610 bcf12352f79066a9d8b543a642e007c7 467 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 266 277 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PP4_RS11610 bcf12352f79066a9d8b543a642e007c7 467 SUPERFAMILY SSF54862 168 347 1.12E-29 T 22-04-2016 PP4_RS11610 bcf12352f79066a9d8b543a642e007c7 467 SUPERFAMILY SSF54862 100 121 1.12E-29 T 22-04-2016 PP4_RS11610 bcf12352f79066a9d8b543a642e007c7 467 PANTHER PTHR24960 26 386 9.7E-162 T 22-04-2016 PP4_RS11610 bcf12352f79066a9d8b543a642e007c7 467 TIGRFAM TIGR02745 ccoG_rdxA_fixG: cytochrome c oxidase accessory protein CcoG 35 464 3.7E-170 T 22-04-2016 IPR014116 Cytochrome c oxidase cbb3 type, accessory protein FixG GO:0016021 PP4_RS11610 bcf12352f79066a9d8b543a642e007c7 467 Gene3D G3DSA:2.60.40.10 348 464 2.7E-28 T 22-04-2016 IPR013783 Immunoglobulin-like fold PP4_RS11610 bcf12352f79066a9d8b543a642e007c7 467 Pfam PF12801 4Fe-4S binding domain 91 125 4.0E-8 T 22-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PP4_RS11610 bcf12352f79066a9d8b543a642e007c7 467 Pfam PF13746 4Fe-4S dicluster domain 213 319 3.3E-42 T 22-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PP4_RS11610 bcf12352f79066a9d8b543a642e007c7 467 PANTHER PTHR24960:SF45 26 386 9.7E-162 T 22-04-2016 PP4_RS05965 9dd787987418a58da608bd383407cd84 450 PANTHER PTHR11785:SF55 12 450 1.0E-232 T 22-04-2016 PP4_RS05965 9dd787987418a58da608bd383407cd84 450 PIRSF PIRSF006060 1 450 1.7E-69 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS05965 9dd787987418a58da608bd383407cd84 450 Pfam PF00324 Amino acid permease 21 383 2.2E-37 T 22-04-2016 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 PP4_RS05965 9dd787987418a58da608bd383407cd84 450 PANTHER PTHR11785 12 450 1.0E-232 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS02785 02de5de59913692c156786a1b65c178b 421 PANTHER PTHR30489:SF2 228 420 1.3E-111 T 22-04-2016 PP4_RS02785 02de5de59913692c156786a1b65c178b 421 PANTHER PTHR30489:SF2 1 204 1.3E-111 T 22-04-2016 PP4_RS02785 02de5de59913692c156786a1b65c178b 421 Pfam PF02687 FtsX-like permease family 294 412 1.3E-21 T 22-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 PP4_RS02785 02de5de59913692c156786a1b65c178b 421 Pfam PF12704 MacB-like periplasmic core domain 19 193 2.7E-13 T 22-04-2016 IPR025857 MacB-like periplasmic core domain PP4_RS02785 02de5de59913692c156786a1b65c178b 421 PANTHER PTHR30489 228 420 1.3E-111 T 22-04-2016 PP4_RS02785 02de5de59913692c156786a1b65c178b 421 PANTHER PTHR30489 1 204 1.3E-111 T 22-04-2016 PP4_RS26575 53ab0f3b113e8e74c971ed62bf0f2b26 60 TIGRFAM TIGR02449 TIGR02449: TIGR02449 family protein 1 60 2.7E-26 T 22-04-2016 IPR012662 Conserved hypothetical protein CHP02449 PP4_RS21405 95d8139a5213e33bebd2f549b403ab6f 458 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 443 34.364 T 22-04-2016 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 PP4_RS21405 95d8139a5213e33bebd2f549b403ab6f 458 Pfam PF00448 SRP54-type protein, GTPase domain 100 296 3.0E-74 T 22-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 PP4_RS21405 95d8139a5213e33bebd2f549b403ab6f 458 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 1.2E-21 T 22-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 PP4_RS21405 95d8139a5213e33bebd2f549b403ab6f 458 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 432 2.9E-177 T 22-04-2016 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 PP4_RS21405 95d8139a5213e33bebd2f549b403ab6f 458 PANTHER PTHR11564:SF7 1 439 3.4E-266 T 22-04-2016 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 PP4_RS21405 95d8139a5213e33bebd2f549b403ab6f 458 Pfam PF02978 Signal peptide binding domain 329 430 5.6E-33 T 22-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 PP4_RS21405 95d8139a5213e33bebd2f549b403ab6f 458 PANTHER PTHR11564 1 439 3.4E-266 T 22-04-2016 PP4_RS21405 95d8139a5213e33bebd2f549b403ab6f 458 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 269 282 - T 22-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 PP4_RS21405 95d8139a5213e33bebd2f549b403ab6f 458 SMART SM00963 1 86 5.1E-35 T 22-04-2016 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: REACT_15380 PP4_RS21405 95d8139a5213e33bebd2f549b403ab6f 458 Gene3D G3DSA:1.10.260.30 329 434 1.2E-38 T 22-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 PP4_RS21405 95d8139a5213e33bebd2f549b403ab6f 458 SUPERFAMILY SSF52540 42 354 9.74E-60 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS21405 95d8139a5213e33bebd2f549b403ab6f 458 Gene3D G3DSA:3.40.50.300 96 297 7.3E-78 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS21405 95d8139a5213e33bebd2f549b403ab6f 458 SMART SM00382 99 247 1.4E-9 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS21405 95d8139a5213e33bebd2f549b403ab6f 458 SUPERFAMILY SSF47446 329 433 1.6E-35 T 22-04-2016 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 PP4_RS21405 95d8139a5213e33bebd2f549b403ab6f 458 Gene3D G3DSA:1.20.120.140 2 88 1.9E-35 T 22-04-2016 PP4_RS21405 95d8139a5213e33bebd2f549b403ab6f 458 SMART SM00962 100 296 4.3E-115 T 22-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 PP4_RS23930 74dc6dd708e06806c216fde00955806b 289 SUPERFAMILY SSF54637 116 283 6.06E-60 T 22-04-2016 IPR029069 HotDog domain PP4_RS23930 74dc6dd708e06806c216fde00955806b 289 PANTHER PTHR11066:SF34 5 287 1.6E-115 T 22-04-2016 PP4_RS23930 74dc6dd708e06806c216fde00955806b 289 TIGRFAM TIGR00189 tesB: acyl-CoA thioesterase II 12 283 2.6E-92 T 22-04-2016 IPR003703 Acyl-CoA thioesterase GO:0006637|GO:0047617 PP4_RS23930 74dc6dd708e06806c216fde00955806b 289 Pfam PF13622 Thioesterase-like superfamily 33 282 1.2E-60 T 22-04-2016 PP4_RS23930 74dc6dd708e06806c216fde00955806b 289 PANTHER PTHR11066 5 287 1.6E-115 T 22-04-2016 IPR003703 Acyl-CoA thioesterase GO:0006637|GO:0047617 PP4_RS23930 74dc6dd708e06806c216fde00955806b 289 SUPERFAMILY SSF54637 4 114 5.97E-41 T 22-04-2016 IPR029069 HotDog domain PP4_RS23930 74dc6dd708e06806c216fde00955806b 289 Gene3D G3DSA:3.10.129.10 5 116 1.8E-48 T 22-04-2016 IPR029069 HotDog domain PP4_RS23930 74dc6dd708e06806c216fde00955806b 289 Gene3D G3DSA:3.10.129.10 126 285 1.2E-56 T 22-04-2016 IPR029069 HotDog domain PP4_RS27030 d4b68c26d22dce5d6d818acdeedcbd4a 285 SUPERFAMILY SSF51735 10 280 2.26E-35 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS27030 d4b68c26d22dce5d6d818acdeedcbd4a 285 PANTHER PTHR10366:SF430 5 280 1.4E-41 T 22-04-2016 PP4_RS27030 d4b68c26d22dce5d6d818acdeedcbd4a 285 PANTHER PTHR10366 5 280 1.4E-41 T 22-04-2016 PP4_RS27030 d4b68c26d22dce5d6d818acdeedcbd4a 285 Pfam PF01370 NAD dependent epimerase/dehydratase family 8 218 1.9E-9 T 22-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 PP4_RS27030 d4b68c26d22dce5d6d818acdeedcbd4a 285 Gene3D G3DSA:3.40.50.720 4 212 4.2E-24 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS00345 027c1fe4289a9f6fa5af7ca579420208 505 Gene3D G3DSA:3.40.720.10 2 366 7.5E-96 T 22-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 PP4_RS00345 027c1fe4289a9f6fa5af7ca579420208 505 SUPERFAMILY SSF53649 2 209 5.89E-119 T 22-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 PP4_RS00345 027c1fe4289a9f6fa5af7ca579420208 505 SUPERFAMILY SSF53649 252 476 5.89E-119 T 22-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 PP4_RS00345 027c1fe4289a9f6fa5af7ca579420208 505 PANTHER PTHR10342:SF207 3 458 4.8E-131 T 22-04-2016 PP4_RS00345 027c1fe4289a9f6fa5af7ca579420208 505 Gene3D G3DSA:3.30.1120.10 368 443 5.5E-12 T 22-04-2016 PP4_RS00345 027c1fe4289a9f6fa5af7ca579420208 505 Pfam PF12411 Choline sulfatase enzyme C terminal 446 498 1.2E-26 T 22-04-2016 IPR025863 Choline sulfatase enzyme C-terminal domain UniPathway: UPA00290 PP4_RS00345 027c1fe4289a9f6fa5af7ca579420208 505 PANTHER PTHR10342 3 458 4.8E-131 T 22-04-2016 PP4_RS00345 027c1fe4289a9f6fa5af7ca579420208 505 TIGRFAM TIGR03417 chol_sulfatase: choline-sulfatase 2 499 3.1E-266 T 22-04-2016 IPR017785 Choline-sulfatase UniPathway: UPA00290 PP4_RS00345 027c1fe4289a9f6fa5af7ca579420208 505 Pfam PF00884 Sulfatase 4 345 3.6E-56 T 22-04-2016 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 PP4_RS00345 027c1fe4289a9f6fa5af7ca579420208 505 ProSitePatterns PS00149 Sulfatases signature 2. 92 102 - T 22-04-2016 IPR024607 Sulfatase, conserved site PP4_RS09615 07e361a233825ca5e15178d95ec704ab 309 SUPERFAMILY SSF50475 6 157 5.4E-50 T 22-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 PP4_RS09615 07e361a233825ca5e15178d95ec704ab 309 SUPERFAMILY SSF46785 180 308 8.73E-14 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS09615 07e361a233825ca5e15178d95ec704ab 309 Gene3D G3DSA:2.30.110.10 3 156 3.0E-57 T 22-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 PP4_RS09615 07e361a233825ca5e15178d95ec704ab 309 SMART SM00903 15 158 9.4E-64 T 22-04-2016 IPR002563 Flavin reductase like domain GO:0010181 PP4_RS09615 07e361a233825ca5e15178d95ec704ab 309 PANTHER PTHR30466 1 195 3.2E-41 T 22-04-2016 PP4_RS09615 07e361a233825ca5e15178d95ec704ab 309 Gene3D G3DSA:1.10.10.10 181 308 1.3E-16 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS09615 07e361a233825ca5e15178d95ec704ab 309 PANTHER PTHR30466:SF2 1 195 3.2E-41 T 22-04-2016 PP4_RS09615 07e361a233825ca5e15178d95ec704ab 309 Pfam PF01613 Flavin reductase like domain 16 157 2.4E-36 T 22-04-2016 IPR002563 Flavin reductase like domain GO:0010181 PP4_RS09525 85446e773bb5e867c4e1ec70e63e8471 189 Gene3D G3DSA:3.30.70.1070 132 184 6.8E-6 T 22-04-2016 IPR007730 Sporulation-related domain GO:0042834 PP4_RS09525 85446e773bb5e867c4e1ec70e63e8471 189 Pfam PF05036 Sporulation related domain 113 183 1.2E-7 T 22-04-2016 IPR007730 Sporulation-related domain GO:0042834 PP4_RS09525 85446e773bb5e867c4e1ec70e63e8471 189 SUPERFAMILY SSF110997 113 183 1.57E-7 T 22-04-2016 IPR007730 Sporulation-related domain GO:0042834 PP4_RS25150 927671ff52d079353fa7e7d100397924 477 TIGRFAM TIGR01844 type_I_sec_TolC: type I secretion outer membrane protein, TolC family 29 451 2.0E-126 T 22-04-2016 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 PP4_RS25150 927671ff52d079353fa7e7d100397924 477 PANTHER PTHR30026 30 460 7.1E-121 T 22-04-2016 PP4_RS25150 927671ff52d079353fa7e7d100397924 477 SUPERFAMILY SSF56954 32 452 1.57E-90 T 22-04-2016 PP4_RS25150 927671ff52d079353fa7e7d100397924 477 PANTHER PTHR30026:SF3 30 460 7.1E-121 T 22-04-2016 IPR010130 Type I secretion outer membrane protein, TolC GO:0006810|GO:0019867 PP4_RS25150 927671ff52d079353fa7e7d100397924 477 Gene3D G3DSA:1.20.1600.10 30 443 8.2E-83 T 22-04-2016 PP4_RS25150 927671ff52d079353fa7e7d100397924 477 Pfam PF02321 Outer membrane efflux protein 244 436 2.2E-29 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PP4_RS25150 927671ff52d079353fa7e7d100397924 477 Pfam PF02321 Outer membrane efflux protein 35 217 1.8E-25 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PP4_RS21580 5aed70fd67a3e54e9e3934decb2ffacd 489 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 8 475 3.7E-165 T 22-04-2016 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 Reactome: REACT_1698 PP4_RS21580 5aed70fd67a3e54e9e3934decb2ffacd 489 SUPERFAMILY SSF54631 95 202 1.26E-24 T 22-04-2016 PP4_RS21580 5aed70fd67a3e54e9e3934decb2ffacd 489 PIRSF PIRSF000130 1 489 1.6E-204 T 22-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 PP4_RS21580 5aed70fd67a3e54e9e3934decb2ffacd 489 PANTHER PTHR11911 298 487 1.6E-250 T 22-04-2016 PP4_RS21580 5aed70fd67a3e54e9e3934decb2ffacd 489 PANTHER PTHR11911 1 280 1.6E-250 T 22-04-2016 PP4_RS21580 5aed70fd67a3e54e9e3934decb2ffacd 489 SUPERFAMILY SSF51412 216 479 6.67E-128 T 22-04-2016 PP4_RS21580 5aed70fd67a3e54e9e3934decb2ffacd 489 SUPERFAMILY SSF51412 2 90 6.67E-128 T 22-04-2016 PP4_RS21580 5aed70fd67a3e54e9e3934decb2ffacd 489 Gene3D G3DSA:3.20.20.70 2 487 4.6E-202 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS21580 5aed70fd67a3e54e9e3934decb2ffacd 489 SMART SM01240 7 475 0.0 T 22-04-2016 PP4_RS21580 5aed70fd67a3e54e9e3934decb2ffacd 489 PANTHER PTHR11911:SF6 298 487 1.6E-250 T 22-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 PP4_RS21580 5aed70fd67a3e54e9e3934decb2ffacd 489 PANTHER PTHR11911:SF6 1 280 1.6E-250 T 22-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 PP4_RS21580 5aed70fd67a3e54e9e3934decb2ffacd 489 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 8 488 84.732 T 22-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 PP4_RS21580 5aed70fd67a3e54e9e3934decb2ffacd 489 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 294 306 - T 22-04-2016 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 Reactome: REACT_1698 PP4_RS21580 5aed70fd67a3e54e9e3934decb2ffacd 489 Pfam PF00571 CBS domain 148 201 0.0022 T 22-04-2016 IPR000644 CBS domain PP4_RS21580 5aed70fd67a3e54e9e3934decb2ffacd 489 Pfam PF00571 CBS domain 95 139 3.0E-7 T 22-04-2016 IPR000644 CBS domain PP4_RS21580 5aed70fd67a3e54e9e3934decb2ffacd 489 SMART SM00116 96 143 7.4E-7 T 22-04-2016 IPR000644 CBS domain PP4_RS21580 5aed70fd67a3e54e9e3934decb2ffacd 489 SMART SM00116 157 205 0.0012 T 22-04-2016 IPR000644 CBS domain PP4_RS21580 5aed70fd67a3e54e9e3934decb2ffacd 489 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 8 456 5.5E-191 T 22-04-2016 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00053+1.1.1.20|KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: REACT_1698|UniPathway: UPA00601 PP4_RS20620 f6e6f09ca2c0ce86285c37157ad7e53a 188 SMART SM00855 2 151 8.5E-13 T 22-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 PP4_RS20620 f6e6f09ca2c0ce86285c37157ad7e53a 188 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 5 183 3.4E-47 T 22-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 PP4_RS20620 f6e6f09ca2c0ce86285c37157ad7e53a 188 PANTHER PTHR23029 1 182 3.4E-39 T 22-04-2016 PP4_RS20620 f6e6f09ca2c0ce86285c37157ad7e53a 188 PIRSF PIRSF000709 3 185 1.5E-8 T 22-04-2016 PP4_RS20620 f6e6f09ca2c0ce86285c37157ad7e53a 188 SUPERFAMILY SSF53254 2 182 2.01E-48 T 22-04-2016 IPR029033 Histidine phosphatase superfamily PP4_RS20620 f6e6f09ca2c0ce86285c37157ad7e53a 188 Gene3D G3DSA:3.40.50.1240 3 180 1.9E-46 T 22-04-2016 IPR029033 Histidine phosphatase superfamily PP4_RS19120 5fb8dbf7fb379a19e7833f0849282250 319 SUPERFAMILY SSF52540 4 291 3.59E-42 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS19120 5fb8dbf7fb379a19e7833f0849282250 319 Gene3D G3DSA:1.10.8.300 201 315 3.3E-41 T 22-04-2016 PP4_RS19120 5fb8dbf7fb379a19e7833f0849282250 319 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 37 167 1.2E-63 T 22-04-2016 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 PP4_RS19120 5fb8dbf7fb379a19e7833f0849282250 319 Gene3D G3DSA:3.40.50.300 19 183 1.6E-41 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS19120 5fb8dbf7fb379a19e7833f0849282250 319 PIRSF PIRSF002849 1 319 8.1E-126 T 22-04-2016 IPR016366 ATPase chaperone, AAA-type, MoxR, predicted PP4_RS19120 5fb8dbf7fb379a19e7833f0849282250 319 PANTHER PTHR11603 1 318 1.4E-149 T 22-04-2016 PP4_RS19120 5fb8dbf7fb379a19e7833f0849282250 319 PANTHER PTHR11603:SF148 1 318 1.4E-149 T 22-04-2016 PP4_RS13885 4ba15ba806b9e27f9d0b383295e60707 215 SUPERFAMILY SSF53474 5 208 1.27E-34 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS13885 4ba15ba806b9e27f9d0b383295e60707 215 Pfam PF12146 Serine aminopeptidase, S33 53 136 2.5E-7 T 22-04-2016 IPR022742 Serine aminopeptidase, S33 PP4_RS13885 4ba15ba806b9e27f9d0b383295e60707 215 Gene3D G3DSA:3.40.50.1820 11 208 3.4E-34 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS13885 4ba15ba806b9e27f9d0b383295e60707 215 PANTHER PTHR12277:SF79 9 122 4.9E-19 T 22-04-2016 PP4_RS13885 4ba15ba806b9e27f9d0b383295e60707 215 PANTHER PTHR12277 9 122 4.9E-19 T 22-04-2016 PP4_RS27075 c6cdd302ff1ccd85c30d9deaf77018ac 382 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 357 372 2.9E-14 T 22-04-2016 PP4_RS27075 c6cdd302ff1ccd85c30d9deaf77018ac 382 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 270 277 2.9E-14 T 22-04-2016 PP4_RS27075 c6cdd302ff1ccd85c30d9deaf77018ac 382 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 145 170 2.9E-14 T 22-04-2016 PP4_RS27075 c6cdd302ff1ccd85c30d9deaf77018ac 382 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 231 245 2.9E-14 T 22-04-2016 PP4_RS27075 c6cdd302ff1ccd85c30d9deaf77018ac 382 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 2.9E-14 T 22-04-2016 PP4_RS27075 c6cdd302ff1ccd85c30d9deaf77018ac 382 Gene3D G3DSA:3.50.50.60 104 299 4.2E-39 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS27075 c6cdd302ff1ccd85c30d9deaf77018ac 382 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 255 277 2.6E-20 T 22-04-2016 PP4_RS27075 c6cdd302ff1ccd85c30d9deaf77018ac 382 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 100 118 2.6E-20 T 22-04-2016 PP4_RS27075 c6cdd302ff1ccd85c30d9deaf77018ac 382 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 2.6E-20 T 22-04-2016 PP4_RS27075 c6cdd302ff1ccd85c30d9deaf77018ac 382 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 145 163 2.6E-20 T 22-04-2016 PP4_RS27075 c6cdd302ff1ccd85c30d9deaf77018ac 382 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 230 246 2.6E-20 T 22-04-2016 PP4_RS27075 c6cdd302ff1ccd85c30d9deaf77018ac 382 SUPERFAMILY SSF51905 192 321 1.63E-32 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS27075 c6cdd302ff1ccd85c30d9deaf77018ac 382 SUPERFAMILY SSF51905 3 162 1.63E-32 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS27075 c6cdd302ff1ccd85c30d9deaf77018ac 382 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 283 7.2E-49 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS27075 c6cdd302ff1ccd85c30d9deaf77018ac 382 Gene3D G3DSA:3.50.50.60 3 103 4.3E-16 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS27075 c6cdd302ff1ccd85c30d9deaf77018ac 382 PANTHER PTHR22912 3 345 1.7E-139 T 22-04-2016 PP4_RS27075 c6cdd302ff1ccd85c30d9deaf77018ac 382 PANTHER PTHR22912:SF130 3 345 1.7E-139 T 22-04-2016 PP4_RS14160 41e1586f8bff938994a0a8753ecbb432 316 SUPERFAMILY SSF161098 97 295 1.96E-17 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS14160 41e1586f8bff938994a0a8753ecbb432 316 PANTHER PTHR30465 1 311 1.5E-97 T 22-04-2016 PP4_RS14160 41e1586f8bff938994a0a8753ecbb432 316 Gene3D G3DSA:1.10.3720.10 96 306 5.2E-18 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS14160 41e1586f8bff938994a0a8753ecbb432 316 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 119 310 9.8E-30 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS14160 41e1586f8bff938994a0a8753ecbb432 316 PANTHER PTHR30465:SF0 1 311 1.5E-97 T 22-04-2016 PP4_RS22785 3f77b53297416065ffd70174bbcfd819 194 Pfam PF03923 Uncharacterized lipoprotein 31 192 1.7E-12 T 22-04-2016 IPR005619 Uncharacterised protein family, YajG PP4_RS10420 bc73fb2fa4d4ac7239946e63860251bb 116 SUPERFAMILY SSF51182 19 115 8.25E-16 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS10420 bc73fb2fa4d4ac7239946e63860251bb 116 Gene3D G3DSA:2.60.120.10 21 116 9.3E-26 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS10420 bc73fb2fa4d4ac7239946e63860251bb 116 Pfam PF05899 Protein of unknown function (DUF861) 46 113 7.6E-23 T 22-04-2016 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 PP4_RS10420 bc73fb2fa4d4ac7239946e63860251bb 116 PANTHER PTHR33271 46 115 7.8E-19 T 22-04-2016 PP4_RS11135 e2509f23eb61c1729fe28caa268aead2 228 Gene3D G3DSA:3.40.630.30 75 125 2.8E-8 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS11135 e2509f23eb61c1729fe28caa268aead2 228 SUPERFAMILY SSF55729 18 149 2.3E-11 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS11135 e2509f23eb61c1729fe28caa268aead2 228 Pfam PF13673 Acetyltransferase (GNAT) domain 76 150 2.0E-6 T 22-04-2016 IPR000182 GNAT domain GO:0008080 PP4_RS22900 870e2d4dc26ce7b2d3a03ebed2557bba 205 SUPERFAMILY SSF89392 17 200 1.26E-51 T 22-04-2016 IPR029046 Lipoprotein localisation LolA/LolB/LppX PP4_RS22900 870e2d4dc26ce7b2d3a03ebed2557bba 205 PANTHER PTHR30634:SF11 12 204 8.1E-49 T 22-04-2016 PP4_RS22900 870e2d4dc26ce7b2d3a03ebed2557bba 205 Hamap MF_00233 Outer-membrane lipoprotein LolB [lolB]. 1 200 25.837 T 22-04-2016 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 PP4_RS22900 870e2d4dc26ce7b2d3a03ebed2557bba 205 PANTHER PTHR30634 12 204 8.1E-49 T 22-04-2016 PP4_RS22900 870e2d4dc26ce7b2d3a03ebed2557bba 205 Gene3D G3DSA:2.50.20.10 11 200 6.2E-62 T 22-04-2016 PP4_RS22900 870e2d4dc26ce7b2d3a03ebed2557bba 205 TIGRFAM TIGR00548 lolB: outer membrane lipoprotein LolB 11 200 7.7E-76 T 22-04-2016 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 PP4_RS22900 870e2d4dc26ce7b2d3a03ebed2557bba 205 Pfam PF03550 Outer membrane lipoprotein LolB 48 198 7.0E-49 T 22-04-2016 IPR004565 Outer membrane lipoprotein LolB GO:0009279|GO:0015031 PP4_RS10790 04804ff37541906ebb429e9db41f9cd6 751 Hamap MF_01961 Catalase-peroxidase [katG]. 2 751 42.338 T 22-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 PP4_RS10790 04804ff37541906ebb429e9db41f9cd6 751 Gene3D G3DSA:1.10.420.10 604 725 2.3E-46 T 22-04-2016 PP4_RS10790 04804ff37541906ebb429e9db41f9cd6 751 Gene3D G3DSA:1.10.520.10 729 750 8.0E-62 T 22-04-2016 PP4_RS10790 04804ff37541906ebb429e9db41f9cd6 751 Gene3D G3DSA:1.10.520.10 452 603 8.0E-62 T 22-04-2016 PP4_RS10790 04804ff37541906ebb429e9db41f9cd6 751 Pfam PF00141 Peroxidase 69 415 5.3E-47 T 22-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 PP4_RS10790 04804ff37541906ebb429e9db41f9cd6 751 Pfam PF00141 Peroxidase 422 724 9.6E-41 T 22-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 PP4_RS10790 04804ff37541906ebb429e9db41f9cd6 751 Gene3D G3DSA:1.10.420.10 328 427 1.8E-46 T 22-04-2016 PP4_RS10790 04804ff37541906ebb429e9db41f9cd6 751 Gene3D G3DSA:1.10.420.10 270 292 1.8E-46 T 22-04-2016 PP4_RS10790 04804ff37541906ebb429e9db41f9cd6 751 PANTHER PTHR30555:SF0 1 196 0.0 T 22-04-2016 PP4_RS10790 04804ff37541906ebb429e9db41f9cd6 751 PANTHER PTHR30555:SF0 227 751 0.0 T 22-04-2016 PP4_RS10790 04804ff37541906ebb429e9db41f9cd6 751 PANTHER PTHR30555 1 196 0.0 T 22-04-2016 PP4_RS10790 04804ff37541906ebb429e9db41f9cd6 751 PANTHER PTHR30555 227 751 0.0 T 22-04-2016 PP4_RS10790 04804ff37541906ebb429e9db41f9cd6 751 PRINTS PR00458 Haem peroxidase superfamily signature 142 159 8.9E-14 T 22-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 PP4_RS10790 04804ff37541906ebb429e9db41f9cd6 751 PRINTS PR00458 Haem peroxidase superfamily signature 160 172 8.9E-14 T 22-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 PP4_RS10790 04804ff37541906ebb429e9db41f9cd6 751 PRINTS PR00458 Haem peroxidase superfamily signature 336 351 8.9E-14 T 22-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 PP4_RS10790 04804ff37541906ebb429e9db41f9cd6 751 PRINTS PR00458 Haem peroxidase superfamily signature 82 96 8.9E-14 T 22-04-2016 IPR002016 Haem peroxidase, plant/fungal/bacterial GO:0004601|GO:0006979|GO:0020037|GO:0055114 PP4_RS10790 04804ff37541906ebb429e9db41f9cd6 751 SUPERFAMILY SSF48113 15 197 6.51E-149 T 22-04-2016 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 PP4_RS10790 04804ff37541906ebb429e9db41f9cd6 751 SUPERFAMILY SSF48113 229 449 6.51E-149 T 22-04-2016 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 PP4_RS10790 04804ff37541906ebb429e9db41f9cd6 751 Gene3D G3DSA:1.10.520.10 41 182 1.1E-73 T 22-04-2016 PP4_RS10790 04804ff37541906ebb429e9db41f9cd6 751 Gene3D G3DSA:1.10.520.10 245 269 1.1E-73 T 22-04-2016 PP4_RS10790 04804ff37541906ebb429e9db41f9cd6 751 ProSitePatterns PS00436 Peroxidases active site signature. 82 93 - T 22-04-2016 IPR019794 Peroxidase, active site GO:0004601|GO:0055114 PP4_RS10790 04804ff37541906ebb429e9db41f9cd6 751 SUPERFAMILY SSF48113 450 750 2.21E-110 T 22-04-2016 IPR010255 Haem peroxidase GO:0004601|GO:0006979|GO:0020037|GO:0055114 PP4_RS10790 04804ff37541906ebb429e9db41f9cd6 751 TIGRFAM TIGR00198 cat_per_HPI: catalase/peroxidase HPI 5 750 0.0 T 22-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 PP4_RS10790 04804ff37541906ebb429e9db41f9cd6 751 ProSitePatterns PS00435 Peroxidases proximal heme-ligand signature. 277 287 - T 22-04-2016 IPR019793 Peroxidases heam-ligand binding site PP4_RS10790 04804ff37541906ebb429e9db41f9cd6 751 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 500 526 1.2E-56 T 22-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 PP4_RS10790 04804ff37541906ebb429e9db41f9cd6 751 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 44 57 1.2E-56 T 22-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 PP4_RS10790 04804ff37541906ebb429e9db41f9cd6 751 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 285 308 1.2E-56 T 22-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 PP4_RS10790 04804ff37541906ebb429e9db41f9cd6 751 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 19 41 1.2E-56 T 22-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 PP4_RS10790 04804ff37541906ebb429e9db41f9cd6 751 PRINTS PR00460 Bacterial haem catalase-peroxidase signature 59 84 1.2E-56 T 22-04-2016 IPR000763 Catalase-peroxidase haem GO:0004096|GO:0004601|GO:0006979|GO:0020037|GO:0055114 KEGG: 00360+1.11.1.21|KEGG: 00380+1.11.1.21|KEGG: 00940+1.11.1.21|MetaCyc: PWY-5506 PP4_RS03260 a8196fc41823735a1857aab752fe862c 178 Pfam PF00293 NUDIX domain 47 156 8.8E-16 T 22-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 PP4_RS03260 a8196fc41823735a1857aab752fe862c 178 Gene3D G3DSA:3.90.79.10 11 175 7.0E-51 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PP4_RS03260 a8196fc41823735a1857aab752fe862c 178 SUPERFAMILY SSF55811 17 174 1.62E-34 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PP4_RS03260 a8196fc41823735a1857aab752fe862c 178 PANTHER PTHR22769 10 173 5.9E-25 T 22-04-2016 PP4_RS03260 a8196fc41823735a1857aab752fe862c 178 PANTHER PTHR22769:SF35 10 173 5.9E-25 T 22-04-2016 PP4_RS03260 a8196fc41823735a1857aab752fe862c 178 PIRSF PIRSF017340 8 178 5.9E-79 T 22-04-2016 IPR024195 NUDIX hydrolase, YfcD, predicted GO:0016817 PP4_RS15250 869ca18f7525f4e84715c0e7d2122ead 400 SUPERFAMILY SSF50129 1 190 4.72E-59 T 22-04-2016 IPR011032 GroES-like PP4_RS15250 869ca18f7525f4e84715c0e7d2122ead 400 PANTHER PTHR11695 288 397 5.6E-162 T 22-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PP4_RS15250 869ca18f7525f4e84715c0e7d2122ead 400 PANTHER PTHR11695 12 106 5.6E-162 T 22-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PP4_RS15250 869ca18f7525f4e84715c0e7d2122ead 400 PANTHER PTHR11695 127 266 5.6E-162 T 22-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PP4_RS15250 869ca18f7525f4e84715c0e7d2122ead 400 PANTHER PTHR11695:SF281 288 397 5.6E-162 T 22-04-2016 PP4_RS15250 869ca18f7525f4e84715c0e7d2122ead 400 PANTHER PTHR11695:SF281 12 106 5.6E-162 T 22-04-2016 PP4_RS15250 869ca18f7525f4e84715c0e7d2122ead 400 PANTHER PTHR11695:SF281 127 266 5.6E-162 T 22-04-2016 PP4_RS15250 869ca18f7525f4e84715c0e7d2122ead 400 Gene3D G3DSA:3.90.180.10 1 88 6.1E-34 T 22-04-2016 IPR011032 GroES-like PP4_RS15250 869ca18f7525f4e84715c0e7d2122ead 400 Gene3D G3DSA:3.90.180.10 137 186 6.1E-34 T 22-04-2016 IPR011032 GroES-like PP4_RS15250 869ca18f7525f4e84715c0e7d2122ead 400 Pfam PF13823 Alcohol dehydrogenase GroES-associated 1 22 6.2E-12 T 22-04-2016 IPR027399 Alcohol dehydrogenase GroES-associated PP4_RS15250 869ca18f7525f4e84715c0e7d2122ead 400 Gene3D G3DSA:3.40.50.720 187 345 1.2E-57 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS15250 869ca18f7525f4e84715c0e7d2122ead 400 SMART SM00829 8 385 0.0041 T 22-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 PP4_RS15250 869ca18f7525f4e84715c0e7d2122ead 400 Pfam PF00107 Zinc-binding dehydrogenase 197 268 3.2E-9 T 22-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 PP4_RS15250 869ca18f7525f4e84715c0e7d2122ead 400 SUPERFAMILY SSF51735 164 351 2.15E-57 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS15250 869ca18f7525f4e84715c0e7d2122ead 400 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 59 73 - T 22-04-2016 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 PP4_RS15250 869ca18f7525f4e84715c0e7d2122ead 400 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 26 151 5.1E-29 T 22-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 PP4_RS14620 7f3ab19b7a1d162021322970751120ab 252 PANTHER PTHR30292 1 252 1.8E-113 T 22-04-2016 PP4_RS14620 7f3ab19b7a1d162021322970751120ab 252 SUPERFAMILY SSF88713 4 249 3.78E-86 T 22-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 PP4_RS14620 7f3ab19b7a1d162021322970751120ab 252 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 2 246 40.844 T 22-04-2016 IPR005501 Uncharacterised protein family UPF0271, LamB/YcsF PP4_RS14620 7f3ab19b7a1d162021322970751120ab 252 PANTHER PTHR30292:SF0 1 252 1.8E-113 T 22-04-2016 PP4_RS14620 7f3ab19b7a1d162021322970751120ab 252 Pfam PF03746 LamB/YcsF family 4 242 1.4E-88 T 22-04-2016 IPR005501 Uncharacterised protein family UPF0271, LamB/YcsF PP4_RS17735 3e624aeea83fce0fdd81f3e18df6d4ca 365 PANTHER PTHR24220 5 319 2.3E-89 T 22-04-2016 PP4_RS17735 3e624aeea83fce0fdd81f3e18df6d4ca 365 Pfam PF08402 TOBE domain 285 352 4.4E-5 T 22-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 PP4_RS17735 3e624aeea83fce0fdd81f3e18df6d4ca 365 SUPERFAMILY SSF50331 243 355 7.29E-18 T 22-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal PP4_RS17735 3e624aeea83fce0fdd81f3e18df6d4ca 365 Gene3D G3DSA:3.40.50.300 4 240 1.8E-62 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS17735 3e624aeea83fce0fdd81f3e18df6d4ca 365 SMART SM00382 34 226 2.5E-10 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS17735 3e624aeea83fce0fdd81f3e18df6d4ca 365 Gene3D G3DSA:2.40.50.100 246 289 2.2E-5 T 22-04-2016 PP4_RS17735 3e624aeea83fce0fdd81f3e18df6d4ca 365 SUPERFAMILY SSF52540 4 251 1.18E-64 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS17735 3e624aeea83fce0fdd81f3e18df6d4ca 365 Pfam PF00005 ABC transporter 33 168 6.0E-22 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS17735 3e624aeea83fce0fdd81f3e18df6d4ca 365 Gene3D G3DSA:2.40.50.140 290 342 2.9E-7 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS17735 3e624aeea83fce0fdd81f3e18df6d4ca 365 PANTHER PTHR24220:SF151 5 319 2.3E-89 T 22-04-2016 PP4_RS16375 0982a21ecc7c4da02e089fe14b38d678 280 Pfam PF00196 Bacterial regulatory proteins, luxR family 201 253 4.3E-14 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS16375 0982a21ecc7c4da02e089fe14b38d678 280 PANTHER PTHR26402 202 260 3.7E-19 T 22-04-2016 PP4_RS16375 0982a21ecc7c4da02e089fe14b38d678 280 PANTHER PTHR26402:SF572 202 260 3.7E-19 T 22-04-2016 PP4_RS16375 0982a21ecc7c4da02e089fe14b38d678 280 SMART SM00421 199 256 7.8E-17 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS16375 0982a21ecc7c4da02e089fe14b38d678 280 SUPERFAMILY SSF46894 191 257 4.76E-16 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS16375 0982a21ecc7c4da02e089fe14b38d678 280 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 202 216 2.0E-11 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS16375 0982a21ecc7c4da02e089fe14b38d678 280 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 216 232 2.0E-11 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS16375 0982a21ecc7c4da02e089fe14b38d678 280 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 232 244 2.0E-11 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS16375 0982a21ecc7c4da02e089fe14b38d678 280 Gene3D G3DSA:1.10.10.10 202 258 9.0E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS22030 317b118dc0f2942aeb88bd3dfa81b1f7 345 Gene3D G3DSA:3.90.640.10 189 260 1.9E-28 T 22-04-2016 PP4_RS22030 317b118dc0f2942aeb88bd3dfa81b1f7 345 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 9 337 1.8E-161 T 22-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 PP4_RS22030 317b118dc0f2942aeb88bd3dfa81b1f7 345 SUPERFAMILY SSF53067 151 340 4.62E-48 T 22-04-2016 PP4_RS22030 317b118dc0f2942aeb88bd3dfa81b1f7 345 Gene3D G3DSA:3.30.420.40 9 161 4.5E-47 T 22-04-2016 PP4_RS22030 317b118dc0f2942aeb88bd3dfa81b1f7 345 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 302 328 1.8E-65 T 22-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 PP4_RS22030 317b118dc0f2942aeb88bd3dfa81b1f7 345 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 134 153 1.8E-65 T 22-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 PP4_RS22030 317b118dc0f2942aeb88bd3dfa81b1f7 345 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 50 68 1.8E-65 T 22-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 PP4_RS22030 317b118dc0f2942aeb88bd3dfa81b1f7 345 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 189 209 1.8E-65 T 22-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 PP4_RS22030 317b118dc0f2942aeb88bd3dfa81b1f7 345 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 70 93 1.8E-65 T 22-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 PP4_RS22030 317b118dc0f2942aeb88bd3dfa81b1f7 345 SUPERFAMILY SSF53067 9 150 1.87E-38 T 22-04-2016 PP4_RS22030 317b118dc0f2942aeb88bd3dfa81b1f7 345 PANTHER PTHR19375:SF117 9 334 2.4E-183 T 22-04-2016 PP4_RS22030 317b118dc0f2942aeb88bd3dfa81b1f7 345 Pfam PF06723 MreB/Mbl protein 11 337 8.5E-149 T 22-04-2016 IPR004753 Cell shape determining protein MreB/Mrl GO:0000902 PP4_RS22030 317b118dc0f2942aeb88bd3dfa81b1f7 345 Gene3D G3DSA:3.30.420.40 162 188 3.9E-34 T 22-04-2016 PP4_RS22030 317b118dc0f2942aeb88bd3dfa81b1f7 345 Gene3D G3DSA:3.30.420.40 265 319 3.9E-34 T 22-04-2016 PP4_RS22030 317b118dc0f2942aeb88bd3dfa81b1f7 345 PANTHER PTHR19375 9 334 2.4E-183 T 22-04-2016 PP4_RS08880 9cefb838f8121a0f4bd3dbb2803eb9a3 72 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 3 70 3.4E-38 T 22-04-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 PP4_RS08880 9cefb838f8121a0f4bd3dbb2803eb9a3 72 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 1 72 26.985 T 22-04-2016 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 PP4_RS08880 9cefb838f8121a0f4bd3dbb2803eb9a3 72 PANTHER PTHR33370 1 72 9.8E-49 T 22-04-2016 PP4_RS08880 9cefb838f8121a0f4bd3dbb2803eb9a3 72 SUPERFAMILY SSF50249 1 70 1.44E-28 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS08880 9cefb838f8121a0f4bd3dbb2803eb9a3 72 Pfam PF01176 Translation initiation factor 1A / IF-1 8 70 1.6E-27 T 22-04-2016 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 PP4_RS08880 9cefb838f8121a0f4bd3dbb2803eb9a3 72 SMART SM00316 4 72 1.7E-6 T 22-04-2016 IPR022967 RNA-binding domain, S1 PP4_RS08880 9cefb838f8121a0f4bd3dbb2803eb9a3 72 Gene3D G3DSA:2.40.50.140 1 71 1.0E-38 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS25470 1d4604c7ffd6ce708a405cf203e73d8d 205 PANTHER PTHR20855 5 205 1.1E-62 T 22-04-2016 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 PP4_RS25470 1d4604c7ffd6ce708a405cf203e73d8d 205 Pfam PF03006 Haemolysin-III related 5 197 2.8E-42 T 22-04-2016 IPR004254 AdipoR/Haemolysin-III-related GO:0016021 PP4_RS25470 1d4604c7ffd6ce708a405cf203e73d8d 205 PANTHER PTHR20855:SF3 5 205 1.1E-62 T 22-04-2016 IPR005744 Hly-III GO:0016021|GO:0019835 PP4_RS25470 1d4604c7ffd6ce708a405cf203e73d8d 205 TIGRFAM TIGR01065 hlyIII: channel protein, hemolysin III family 5 204 8.5E-65 T 22-04-2016 IPR005744 Hly-III GO:0016021|GO:0019835 PP4_RS12835 cb86925048e522a1d5da7b63512abdf3 351 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 290 332 - T 22-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PP4_RS12835 cb86925048e522a1d5da7b63512abdf3 351 Gene3D G3DSA:1.10.10.60 290 338 1.8E-15 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS12835 cb86925048e522a1d5da7b63512abdf3 351 Pfam PF12833 Helix-turn-helix domain 259 338 9.2E-24 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS12835 cb86925048e522a1d5da7b63512abdf3 351 SMART SM00342 253 336 1.4E-31 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS12835 cb86925048e522a1d5da7b63512abdf3 351 Pfam PF01965 DJ-1/PfpI family 30 198 5.9E-9 T 22-04-2016 IPR002818 DJ-1/PfpI PP4_RS12835 cb86925048e522a1d5da7b63512abdf3 351 SUPERFAMILY SSF52317 30 217 1.34E-32 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS12835 cb86925048e522a1d5da7b63512abdf3 351 Gene3D G3DSA:3.40.50.880 30 230 1.8E-29 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS12835 cb86925048e522a1d5da7b63512abdf3 351 Gene3D G3DSA:1.10.10.60 239 289 2.3E-15 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS12835 cb86925048e522a1d5da7b63512abdf3 351 PANTHER PTHR11019:SF90 29 52 1.2E-39 T 22-04-2016 PP4_RS12835 cb86925048e522a1d5da7b63512abdf3 351 PANTHER PTHR11019:SF90 79 344 1.2E-39 T 22-04-2016 PP4_RS12835 cb86925048e522a1d5da7b63512abdf3 351 SUPERFAMILY SSF46689 289 339 5.82E-12 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS12835 cb86925048e522a1d5da7b63512abdf3 351 PANTHER PTHR11019 29 52 1.2E-39 T 22-04-2016 PP4_RS12835 cb86925048e522a1d5da7b63512abdf3 351 PANTHER PTHR11019 79 344 1.2E-39 T 22-04-2016 PP4_RS12835 cb86925048e522a1d5da7b63512abdf3 351 SUPERFAMILY SSF46689 239 287 8.42E-10 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS18525 b28402b80dc2d44f51ff74c110956e08 308 Pfam PF00923 Transaldolase 14 302 1.1E-96 T 22-04-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 PP4_RS18525 b28402b80dc2d44f51ff74c110956e08 308 ProSitePatterns PS00958 Transaldolase active site. 122 139 - T 22-04-2016 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 PP4_RS18525 b28402b80dc2d44f51ff74c110956e08 308 Hamap MF_00492 Transaldolase [tal]. 2 308 50.011 T 22-04-2016 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 PP4_RS18525 b28402b80dc2d44f51ff74c110956e08 308 Gene3D G3DSA:3.20.20.70 2 307 8.8E-121 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS18525 b28402b80dc2d44f51ff74c110956e08 308 TIGRFAM TIGR00874 talAB: transaldolase 4 307 6.2E-137 T 22-04-2016 IPR004730 Transaldolase type 1 GO:0004801|GO:0005737|GO:0006098 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 PP4_RS18525 b28402b80dc2d44f51ff74c110956e08 308 PANTHER PTHR10683 1 307 3.7E-163 T 22-04-2016 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 PP4_RS18525 b28402b80dc2d44f51ff74c110956e08 308 ProSitePatterns PS01054 Transaldolase signature 1. 31 39 - T 22-04-2016 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|UniPathway: UPA00115 PP4_RS18525 b28402b80dc2d44f51ff74c110956e08 308 SUPERFAMILY SSF51569 1 307 1.47E-108 T 22-04-2016 PP4_RS18525 b28402b80dc2d44f51ff74c110956e08 308 PANTHER PTHR10683:SF18 1 307 3.7E-163 T 22-04-2016 PP4_RS10630 caf61b569e283c99f4bd5e1ac1d42a07 261 SMART SM00062 25 246 1.9E-5 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS10630 caf61b569e283c99f4bd5e1ac1d42a07 261 Gene3D G3DSA:3.40.190.10 101 206 1.4E-4 T 22-04-2016 PP4_RS10630 caf61b569e283c99f4bd5e1ac1d42a07 261 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 33 243 2.6E-20 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS10630 caf61b569e283c99f4bd5e1ac1d42a07 261 Gene3D G3DSA:3.40.190.10 207 244 6.5E-12 T 22-04-2016 PP4_RS10630 caf61b569e283c99f4bd5e1ac1d42a07 261 Gene3D G3DSA:3.40.190.10 24 100 6.5E-12 T 22-04-2016 PP4_RS10630 caf61b569e283c99f4bd5e1ac1d42a07 261 SUPERFAMILY SSF53850 28 244 1.27E-36 T 22-04-2016 PP4_RS10630 caf61b569e283c99f4bd5e1ac1d42a07 261 PANTHER PTHR35936 1 257 3.4E-30 T 22-04-2016 PP4_RS13405 d03c2b6669404bcfa50054e259437a13 484 PRINTS PR00175 Sodium/alanine symporter signature 84 106 6.6E-48 T 22-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 PP4_RS13405 d03c2b6669404bcfa50054e259437a13 484 PRINTS PR00175 Sodium/alanine symporter signature 340 362 6.6E-48 T 22-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 PP4_RS13405 d03c2b6669404bcfa50054e259437a13 484 PRINTS PR00175 Sodium/alanine symporter signature 175 193 6.6E-48 T 22-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 PP4_RS13405 d03c2b6669404bcfa50054e259437a13 484 PRINTS PR00175 Sodium/alanine symporter signature 294 312 6.6E-48 T 22-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 PP4_RS13405 d03c2b6669404bcfa50054e259437a13 484 PRINTS PR00175 Sodium/alanine symporter signature 401 421 6.6E-48 T 22-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 PP4_RS13405 d03c2b6669404bcfa50054e259437a13 484 PRINTS PR00175 Sodium/alanine symporter signature 203 222 6.6E-48 T 22-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 PP4_RS13405 d03c2b6669404bcfa50054e259437a13 484 PANTHER PTHR30330:SF1 1 466 9.5E-236 T 22-04-2016 PP4_RS13405 d03c2b6669404bcfa50054e259437a13 484 Pfam PF01235 Sodium:alanine symporter family 49 444 4.6E-147 T 22-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 PP4_RS13405 d03c2b6669404bcfa50054e259437a13 484 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 84 99 - T 22-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 PP4_RS13405 d03c2b6669404bcfa50054e259437a13 484 PANTHER PTHR30330 1 466 9.5E-236 T 22-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 PP4_RS13405 d03c2b6669404bcfa50054e259437a13 484 TIGRFAM TIGR00835 agcS: amino acid carrier protein 14 432 6.3E-141 T 22-04-2016 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 PP4_RS22355 6a79967dda97dfc9ae134cc319c0af39 620 Pfam PF02355 Protein export membrane protein 443 606 3.2E-16 T 22-04-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial PP4_RS22355 6a79967dda97dfc9ae134cc319c0af39 620 PANTHER PTHR30081 1 175 4.3E-199 T 22-04-2016 PP4_RS22355 6a79967dda97dfc9ae134cc319c0af39 620 PANTHER PTHR30081 310 382 4.3E-199 T 22-04-2016 PP4_RS22355 6a79967dda97dfc9ae134cc319c0af39 620 PANTHER PTHR30081 228 286 4.3E-199 T 22-04-2016 PP4_RS22355 6a79967dda97dfc9ae134cc319c0af39 620 PANTHER PTHR30081 401 618 4.3E-199 T 22-04-2016 PP4_RS22355 6a79967dda97dfc9ae134cc319c0af39 620 SUPERFAMILY SSF82866 416 608 1.1E-40 T 22-04-2016 PP4_RS22355 6a79967dda97dfc9ae134cc319c0af39 620 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 3 619 49.354 T 22-04-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 PP4_RS22355 6a79967dda97dfc9ae134cc319c0af39 620 Gene3D G3DSA:1.20.1640.10 454 609 2.5E-24 T 22-04-2016 PP4_RS22355 6a79967dda97dfc9ae134cc319c0af39 620 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 125 606 1.4E-128 T 22-04-2016 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 PP4_RS22355 6a79967dda97dfc9ae134cc319c0af39 620 Pfam PF13721 SecD export protein N-terminal TM region 2 105 1.0E-34 T 22-04-2016 IPR027398 SecD export protein N-terminal TM domain PP4_RS22355 6a79967dda97dfc9ae134cc319c0af39 620 PANTHER PTHR30081:SF1 1 175 4.3E-199 T 22-04-2016 PP4_RS22355 6a79967dda97dfc9ae134cc319c0af39 620 PANTHER PTHR30081:SF1 310 382 4.3E-199 T 22-04-2016 PP4_RS22355 6a79967dda97dfc9ae134cc319c0af39 620 PANTHER PTHR30081:SF1 228 286 4.3E-199 T 22-04-2016 PP4_RS22355 6a79967dda97dfc9ae134cc319c0af39 620 PANTHER PTHR30081:SF1 401 618 4.3E-199 T 22-04-2016 PP4_RS22355 6a79967dda97dfc9ae134cc319c0af39 620 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 342 599 4.0E-67 T 22-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial PP4_RS22355 6a79967dda97dfc9ae134cc319c0af39 620 Pfam PF07549 SecD/SecF GG Motif 119 142 4.5E-6 T 22-04-2016 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site PP4_RS13360 eefcfe1bac0b8a3d90a4659493ef8726 401 SUPERFAMILY SSF53850 189 397 1.97E-36 T 22-04-2016 PP4_RS13360 eefcfe1bac0b8a3d90a4659493ef8726 401 Gene3D G3DSA:3.40.190.10 189 274 3.8E-13 T 22-04-2016 PP4_RS13360 eefcfe1bac0b8a3d90a4659493ef8726 401 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 68 2.8E-17 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS13360 eefcfe1bac0b8a3d90a4659493ef8726 401 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 105 160 1.3E-12 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS13360 eefcfe1bac0b8a3d90a4659493ef8726 401 PANTHER PTHR30419:SF10 98 392 4.3E-82 T 22-04-2016 PP4_RS13360 eefcfe1bac0b8a3d90a4659493ef8726 401 Gene3D G3DSA:3.40.190.10 275 362 2.6E-12 T 22-04-2016 PP4_RS13360 eefcfe1bac0b8a3d90a4659493ef8726 401 Gene3D G3DSA:1.10.10.10 103 188 2.0E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS13360 eefcfe1bac0b8a3d90a4659493ef8726 401 Gene3D G3DSA:1.10.10.10 9 86 2.6E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS13360 eefcfe1bac0b8a3d90a4659493ef8726 401 PANTHER PTHR30419 98 392 4.3E-82 T 22-04-2016 PP4_RS13360 eefcfe1bac0b8a3d90a4659493ef8726 401 SUPERFAMILY SSF46785 10 90 2.45E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS13360 eefcfe1bac0b8a3d90a4659493ef8726 401 Pfam PF03466 LysR substrate binding domain 188 394 4.0E-34 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS13360 eefcfe1bac0b8a3d90a4659493ef8726 401 SUPERFAMILY SSF46785 101 182 1.07E-14 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS12975 9e9907decacb495e2c81957e8ad1ff2a 421 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 23 396 7.6E-17 T 22-04-2016 IPR001248 Purine-cytosine permease GO:0005215|GO:0016020|GO:0055085 PP4_RS12975 9e9907decacb495e2c81957e8ad1ff2a 421 PANTHER PTHR30569 1 411 4.4E-55 T 22-04-2016 IPR030191 Cytosine permease GO:0015209|GO:0016021 PP4_RS16975 cb3e34fc31546c0f78c457ff1b1be325 203 SUPERFAMILY SSF52218 1 197 5.43E-49 T 22-04-2016 IPR029039 Flavoprotein-like domain PP4_RS16975 cb3e34fc31546c0f78c457ff1b1be325 203 Gene3D G3DSA:3.40.50.360 1 197 2.6E-44 T 22-04-2016 IPR029039 Flavoprotein-like domain PP4_RS16975 cb3e34fc31546c0f78c457ff1b1be325 203 PANTHER PTHR10204:SF0 1 175 9.2E-61 T 22-04-2016 PP4_RS16975 cb3e34fc31546c0f78c457ff1b1be325 203 Pfam PF02525 Flavodoxin-like fold 1 189 1.4E-42 T 22-04-2016 IPR003680 Flavodoxin-like fold PP4_RS16975 cb3e34fc31546c0f78c457ff1b1be325 203 PANTHER PTHR10204 1 175 9.2E-61 T 22-04-2016 PP4_RS18405 ac578684d60a3fe0c07127c7ca1e24d5 595 SUPERFAMILY SSF51905 483 542 1.05E-78 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS18405 ac578684d60a3fe0c07127c7ca1e24d5 595 SUPERFAMILY SSF51905 15 300 1.05E-78 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS18405 ac578684d60a3fe0c07127c7ca1e24d5 595 PANTHER PTHR11552:SF51 1 560 1.3E-215 T 22-04-2016 PP4_RS18405 ac578684d60a3fe0c07127c7ca1e24d5 595 Gene3D G3DSA:3.50.50.60 477 542 1.7E-112 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS18405 ac578684d60a3fe0c07127c7ca1e24d5 595 Gene3D G3DSA:3.50.50.60 199 325 1.7E-112 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS18405 ac578684d60a3fe0c07127c7ca1e24d5 595 Gene3D G3DSA:3.50.50.60 14 139 1.7E-112 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS18405 ac578684d60a3fe0c07127c7ca1e24d5 595 Pfam PF05199 GMC oxidoreductase 399 534 8.9E-34 T 22-04-2016 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 PP4_RS18405 ac578684d60a3fe0c07127c7ca1e24d5 595 PANTHER PTHR11552 1 560 1.3E-215 T 22-04-2016 PP4_RS18405 ac578684d60a3fe0c07127c7ca1e24d5 595 PIRSF PIRSF000137 1 549 2.3E-132 T 22-04-2016 IPR012132 Glucose-methanol-choline oxidoreductase GO:0016614|GO:0050660|GO:0055114 KEGG: 00260+1.2.1.8+1.1.99.1|MetaCyc: PWY-3722|MetaCyc: PWY-7494|UniPathway: UPA00529 PP4_RS18405 ac578684d60a3fe0c07127c7ca1e24d5 595 ProSitePatterns PS00623 GMC oxidoreductases signature 1. 95 118 - T 22-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 PP4_RS18405 ac578684d60a3fe0c07127c7ca1e24d5 595 Pfam PF00732 GMC oxidoreductase 18 307 1.4E-88 T 22-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 PP4_RS18405 ac578684d60a3fe0c07127c7ca1e24d5 595 SUPERFAMILY SSF54373 302 484 8.24E-55 T 22-04-2016 PP4_RS18405 ac578684d60a3fe0c07127c7ca1e24d5 595 ProSitePatterns PS00624 GMC oxidoreductases signature 2. 266 280 - T 22-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 PP4_RS17445 83c2ae960111fc1961ba118d452d54c2 222 SMART SM00448 1 112 7.5E-39 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS17445 83c2ae960111fc1961ba118d452d54c2 222 SUPERFAMILY SSF52172 1 180 4.27E-37 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS17445 83c2ae960111fc1961ba118d452d54c2 222 PANTHER PTHR26402:SF279 1 216 4.4E-121 T 22-04-2016 PP4_RS17445 83c2ae960111fc1961ba118d452d54c2 222 PANTHER PTHR26402 1 216 4.4E-121 T 22-04-2016 PP4_RS17445 83c2ae960111fc1961ba118d452d54c2 222 Pfam PF00072 Response regulator receiver domain 4 112 8.9E-24 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS17445 83c2ae960111fc1961ba118d452d54c2 222 SMART SM00862 146 217 1.2E-22 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS17445 83c2ae960111fc1961ba118d452d54c2 222 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 216 7.3E-21 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS17445 83c2ae960111fc1961ba118d452d54c2 222 Gene3D G3DSA:1.10.10.10 125 217 3.8E-27 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS17445 83c2ae960111fc1961ba118d452d54c2 222 Gene3D G3DSA:3.40.50.2300 1 124 2.8E-34 T 22-04-2016 PP4_RS02465 38cd8cb96e57e04f8d57b58ba15f1bb1 121 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 57 100 2.0E-16 T 22-04-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 PP4_RS02465 38cd8cb96e57e04f8d57b58ba15f1bb1 121 SUPERFAMILY SSF48300 4 57 4.19E-14 T 22-04-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02465 38cd8cb96e57e04f8d57b58ba15f1bb1 121 Gene3D G3DSA:1.20.5.710 2 50 2.7E-19 T 22-04-2016 PP4_RS02465 38cd8cb96e57e04f8d57b58ba15f1bb1 121 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 55 121 5.0E-29 T 22-04-2016 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 PP4_RS02465 38cd8cb96e57e04f8d57b58ba15f1bb1 121 Gene3D G3DSA:3.30.1390.10 51 121 4.1E-32 T 22-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like PP4_RS02465 38cd8cb96e57e04f8d57b58ba15f1bb1 121 SUPERFAMILY SSF54736 50 121 2.96E-24 T 22-04-2016 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like PP4_RS02465 38cd8cb96e57e04f8d57b58ba15f1bb1 121 TIGRFAM TIGR00855 L12: ribosomal protein bL12 1 121 1.3E-43 T 22-04-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02465 38cd8cb96e57e04f8d57b58ba15f1bb1 121 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 4 47 1.6E-16 T 22-04-2016 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02465 38cd8cb96e57e04f8d57b58ba15f1bb1 121 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 2 121 24.612 T 22-04-2016 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS24345 a0de50dc17fc22c90b91ab8d0e7a0b4a 844 PIRSF PIRSF005496 1 844 0.0 T 22-04-2016 IPR010225 RNA helicase, ATP-dependent DEAH box, HrpB-type PP4_RS24345 a0de50dc17fc22c90b91ab8d0e7a0b4a 844 Pfam PF04408 Helicase associated domain (HA2) 398 476 3.5E-13 T 22-04-2016 IPR007502 Helicase-associated domain GO:0004386 PP4_RS24345 a0de50dc17fc22c90b91ab8d0e7a0b4a 844 Pfam PF00271 Helicase conserved C-terminal domain 206 337 2.7E-14 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS24345 a0de50dc17fc22c90b91ab8d0e7a0b4a 844 SMART SM00487 2 189 1.2E-18 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PP4_RS24345 a0de50dc17fc22c90b91ab8d0e7a0b4a 844 Pfam PF00270 DEAD/DEAH box helicase 13 167 1.9E-8 T 22-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 PP4_RS24345 a0de50dc17fc22c90b91ab8d0e7a0b4a 844 PANTHER PTHR18934 4 458 1.1E-168 T 22-04-2016 PP4_RS24345 a0de50dc17fc22c90b91ab8d0e7a0b4a 844 Gene3D G3DSA:3.40.50.300 206 354 3.0E-16 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS24345 a0de50dc17fc22c90b91ab8d0e7a0b4a 844 SMART SM00847 397 490 8.3E-16 T 22-04-2016 IPR007502 Helicase-associated domain GO:0004386 PP4_RS24345 a0de50dc17fc22c90b91ab8d0e7a0b4a 844 SUPERFAMILY SSF52540 16 348 2.46E-52 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS24345 a0de50dc17fc22c90b91ab8d0e7a0b4a 844 Pfam PF08482 ATP-dependent helicase C-terminal 699 830 1.4E-52 T 22-04-2016 IPR013689 ATP-dependent RNA helicase HrpB, C-terminal PP4_RS24345 a0de50dc17fc22c90b91ab8d0e7a0b4a 844 SMART SM00490 234 338 7.8E-18 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS24345 a0de50dc17fc22c90b91ab8d0e7a0b4a 844 Gene3D G3DSA:3.40.50.300 4 164 2.1E-46 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS24345 a0de50dc17fc22c90b91ab8d0e7a0b4a 844 TIGRFAM TIGR01970 DEAH_box_HrpB: ATP-dependent helicase HrpB 4 843 0.0 T 22-04-2016 IPR010225 RNA helicase, ATP-dependent DEAH box, HrpB-type PP4_RS07105 7fcf0f0839463d36d2641c646ce868d7 491 Gene3D G3DSA:1.10.10.60 421 480 2.3E-12 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS07105 7fcf0f0839463d36d2641c646ce868d7 491 SUPERFAMILY SSF52172 3 188 1.89E-12 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS07105 7fcf0f0839463d36d2641c646ce868d7 491 SUPERFAMILY SSF46689 433 480 4.39E-9 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS07105 7fcf0f0839463d36d2641c646ce868d7 491 SMART SM00382 166 310 2.0E-10 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS07105 7fcf0f0839463d36d2641c646ce868d7 491 Pfam PF02954 Bacterial regulatory protein, Fis family 440 478 4.5E-11 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS07105 7fcf0f0839463d36d2641c646ce868d7 491 SUPERFAMILY SSF52540 146 387 5.87E-69 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS07105 7fcf0f0839463d36d2641c646ce868d7 491 Gene3D G3DSA:3.40.50.300 143 318 5.7E-64 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS07105 7fcf0f0839463d36d2641c646ce868d7 491 Gene3D G3DSA:1.10.8.60 319 391 1.3E-20 T 22-04-2016 PP4_RS07105 7fcf0f0839463d36d2641c646ce868d7 491 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 170 183 - T 22-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 PP4_RS07105 7fcf0f0839463d36d2641c646ce868d7 491 PANTHER PTHR32071:SF36 1 491 4.5E-265 T 22-04-2016 PP4_RS07105 7fcf0f0839463d36d2641c646ce868d7 491 Pfam PF06490 Flagellar regulatory protein FleQ 6 123 2.8E-29 T 22-04-2016 IPR010518 Flagellar regulatory FleQ PP4_RS07105 7fcf0f0839463d36d2641c646ce868d7 491 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 232 247 - T 22-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PP4_RS07105 7fcf0f0839463d36d2641c646ce868d7 491 PANTHER PTHR32071 1 491 4.5E-265 T 22-04-2016 PP4_RS07105 7fcf0f0839463d36d2641c646ce868d7 491 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 358 367 - T 22-04-2016 IPR025944 Sigma-54 interaction domain, conserved site PP4_RS07105 7fcf0f0839463d36d2641c646ce868d7 491 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 444 461 3.2E-8 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS07105 7fcf0f0839463d36d2641c646ce868d7 491 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 461 481 3.2E-8 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS07105 7fcf0f0839463d36d2641c646ce868d7 491 Pfam PF00158 Sigma-54 interaction domain 146 313 2.2E-75 T 22-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 PP4_RS06805 55dc3010bc742d9e9fa1b4fd9265df71 261 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 26 252 1.1E-62 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS06805 55dc3010bc742d9e9fa1b4fd9265df71 261 PANTHER PTHR18966 18 251 1.7E-65 T 22-04-2016 PP4_RS06805 55dc3010bc742d9e9fa1b4fd9265df71 261 SUPERFAMILY SSF53850 1 255 1.53E-69 T 22-04-2016 PP4_RS06805 55dc3010bc742d9e9fa1b4fd9265df71 261 Gene3D G3DSA:3.40.190.10 213 256 6.8E-44 T 22-04-2016 PP4_RS06805 55dc3010bc742d9e9fa1b4fd9265df71 261 Gene3D G3DSA:3.40.190.10 22 111 6.8E-44 T 22-04-2016 PP4_RS06805 55dc3010bc742d9e9fa1b4fd9265df71 261 SMART SM00062 25 254 2.8E-78 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS06805 55dc3010bc742d9e9fa1b4fd9265df71 261 Gene3D G3DSA:3.40.190.10 114 211 1.7E-26 T 22-04-2016 PP4_RS06805 55dc3010bc742d9e9fa1b4fd9265df71 261 PANTHER PTHR18966:SF152 18 251 1.7E-65 T 22-04-2016 PP4_RS06805 55dc3010bc742d9e9fa1b4fd9265df71 261 TIGRFAM TIGR01096 3A0103s03R: lysine-arginine-ornithine-binding periplasmic protein 4 251 9.6E-86 T 22-04-2016 IPR005768 Lysine-arginine-ornithine-binding periplasmic protein GO:0005215|GO:0006810|GO:0030288 PP4_RS15220 8badc1118d2ff7f30a2b13a85a5c4c88 268 Pfam PF12277 Protein of unknown function (DUF3618) 10 55 4.1E-10 T 22-04-2016 IPR022062 Protein of unknown function DUF3618 PP4_RS07620 a38854106b1f07edff4ae575eef9106b 296 TIGRFAM TIGR02205 septum_zipA: cell division protein ZipA 5 284 4.9E-78 T 22-04-2016 IPR011919 Cell division protein ZipA GO:0000917|GO:0007049|GO:0016021 PP4_RS07620 a38854106b1f07edff4ae575eef9106b 296 SUPERFAMILY SSF64383 155 290 7.72E-47 T 22-04-2016 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0000917|GO:0016021 PP4_RS07620 a38854106b1f07edff4ae575eef9106b 296 Hamap MF_00509 Cell division protein ZipA [zipA]. 3 286 24.839 T 22-04-2016 IPR011919 Cell division protein ZipA GO:0000917|GO:0007049|GO:0016021 PP4_RS07620 a38854106b1f07edff4ae575eef9106b 296 Gene3D G3DSA:3.30.1400.10 154 290 2.8E-57 T 22-04-2016 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0000917|GO:0016021 PP4_RS07620 a38854106b1f07edff4ae575eef9106b 296 ProDom PD035754 CELL DIVISION MEMBRANE ZIPA SEPTATION TRANSMEMBRANE HOMOLOG INNER CYCLE ZIPA 157 286 2.0E-71 T 22-04-2016 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0000917|GO:0016021 PP4_RS07620 a38854106b1f07edff4ae575eef9106b 296 Pfam PF04354 ZipA, C-terminal FtsZ-binding domain 156 283 3.1E-48 T 22-04-2016 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0000917|GO:0016021 PP4_RS07620 a38854106b1f07edff4ae575eef9106b 296 PANTHER PTHR38685:SF1 1 296 2.5E-73 T 22-04-2016 PP4_RS07620 a38854106b1f07edff4ae575eef9106b 296 PANTHER PTHR38685 1 296 2.5E-73 T 22-04-2016 PP4_RS07620 a38854106b1f07edff4ae575eef9106b 296 SMART SM00771 154 284 1.0E-67 T 22-04-2016 IPR007449 ZipA, C-terminal FtsZ-binding domain GO:0000917|GO:0016021 PP4_RS26430 ed6cd1f7786e12fe984a18684c672bac 355 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 56 257 4.1E-12 T 22-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PP4_RS26430 ed6cd1f7786e12fe984a18684c672bac 355 Gene3D G3DSA:2.40.50.100 60 88 8.9E-11 T 22-04-2016 PP4_RS26430 ed6cd1f7786e12fe984a18684c672bac 355 Gene3D G3DSA:2.40.50.100 163 194 8.9E-11 T 22-04-2016 PP4_RS26430 ed6cd1f7786e12fe984a18684c672bac 355 SUPERFAMILY SSF111369 45 273 4.71E-19 T 22-04-2016 PP4_RS26430 ed6cd1f7786e12fe984a18684c672bac 355 PANTHER PTHR30469:SF14 13 355 2.7E-138 T 22-04-2016 PP4_RS26430 ed6cd1f7786e12fe984a18684c672bac 355 PANTHER PTHR30469 13 355 2.7E-138 T 22-04-2016 PP4_RS26430 ed6cd1f7786e12fe984a18684c672bac 355 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 32 349 1.5E-69 T 22-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 PP4_RS03275 e61d5318a46fc6c0790f4151761b38c7 151 SMART SM01321 16 130 8.6E-33 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 PP4_RS03275 e61d5318a46fc6c0790f4151761b38c7 151 SUPERFAMILY SSF143422 9 136 1.7E-30 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 PP4_RS03275 e61d5318a46fc6c0790f4151761b38c7 151 PANTHER PTHR36966 5 151 1.2E-20 T 22-04-2016 PP4_RS03275 e61d5318a46fc6c0790f4151761b38c7 151 Gene3D G3DSA:3.30.70.1290 7 132 1.3E-14 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 PP4_RS03275 e61d5318a46fc6c0790f4151761b38c7 151 PANTHER PTHR36966:SF1 5 151 1.2E-20 T 22-04-2016 PP4_RS03275 e61d5318a46fc6c0790f4151761b38c7 151 Pfam PF01797 Transposase IS200 like 21 129 1.3E-12 T 22-04-2016 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 PP4_RS24225 76539afb3ba70546d17c6f47340c8c9e 233 Pfam PF00196 Bacterial regulatory proteins, luxR family 178 231 2.4E-17 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS24225 76539afb3ba70546d17c6f47340c8c9e 233 PANTHER PTHR26402 177 230 9.7E-13 T 22-04-2016 PP4_RS24225 76539afb3ba70546d17c6f47340c8c9e 233 SUPERFAMILY SSF46894 165 231 2.75E-18 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS24225 76539afb3ba70546d17c6f47340c8c9e 233 SMART SM00421 176 233 1.3E-19 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS24225 76539afb3ba70546d17c6f47340c8c9e 233 SUPERFAMILY SSF55781 11 177 5.56E-5 T 22-04-2016 IPR029016 GAF domain-like PP4_RS24225 76539afb3ba70546d17c6f47340c8c9e 233 Gene3D G3DSA:1.10.10.10 170 231 3.4E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS24225 76539afb3ba70546d17c6f47340c8c9e 233 PANTHER PTHR26402:SF588 177 230 9.7E-13 T 22-04-2016 PP4_RS24225 76539afb3ba70546d17c6f47340c8c9e 233 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 193 209 1.1E-11 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS24225 76539afb3ba70546d17c6f47340c8c9e 233 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 209 221 1.1E-11 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS24225 76539afb3ba70546d17c6f47340c8c9e 233 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 179 193 1.1E-11 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS27135 96b9fc79e112f66523da581861218195 277 ProSitePatterns PS00211 ABC transporters family signature. 174 188 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS27135 96b9fc79e112f66523da581861218195 277 PANTHER PTHR24220 32 276 9.6E-139 T 22-04-2016 PP4_RS27135 96b9fc79e112f66523da581861218195 277 Gene3D G3DSA:3.40.50.300 30 271 9.1E-68 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS27135 96b9fc79e112f66523da581861218195 277 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 31 277 3.0E-125 T 22-04-2016 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 PP4_RS27135 96b9fc79e112f66523da581861218195 277 PANTHER PTHR24220:SF585 32 276 9.6E-139 T 22-04-2016 PP4_RS27135 96b9fc79e112f66523da581861218195 277 SMART SM00382 55 258 3.1E-8 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS27135 96b9fc79e112f66523da581861218195 277 Pfam PF00005 ABC transporter 48 201 5.8E-30 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS27135 96b9fc79e112f66523da581861218195 277 SUPERFAMILY SSF52540 28 264 3.82E-58 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS22020 88b76210f090d6c064072bd4b40a38fd 162 Pfam PF04093 rod shape-determining protein MreD 4 150 2.3E-35 T 22-04-2016 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 PP4_RS22020 88b76210f090d6c064072bd4b40a38fd 162 TIGRFAM TIGR03426 shape_MreD: rod shape-determining protein MreD 8 153 4.2E-37 T 22-04-2016 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 PP4_RS22020 88b76210f090d6c064072bd4b40a38fd 162 PANTHER PTHR37484 1 162 2.4E-58 T 22-04-2016 PP4_RS22020 88b76210f090d6c064072bd4b40a38fd 162 PIRSF PIRSF018472 1 162 1.3E-51 T 22-04-2016 IPR026034 Cell shape-determining protein MreD, proteobacterial type PP4_RS03655 7a12bc4c83ecf7991065f159b69ea726 505 PANTHER PTHR11119:SF3 15 437 2.1E-110 T 22-04-2016 PP4_RS03655 7a12bc4c83ecf7991065f159b69ea726 505 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 23 434 7.4E-105 T 22-04-2016 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 PP4_RS03655 7a12bc4c83ecf7991065f159b69ea726 505 PANTHER PTHR11119 15 437 2.1E-110 T 22-04-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 PP4_RS03655 7a12bc4c83ecf7991065f159b69ea726 505 Pfam PF00860 Permease family 24 403 8.1E-92 T 22-04-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 PP4_RS03655 7a12bc4c83ecf7991065f159b69ea726 505 TIGRFAM TIGR03173 pbuX: xanthine permease 26 436 1.8E-152 T 22-04-2016 IPR017588 Uric acid permease UacT-like GO:0006810|GO:0016021 PP4_RS03655 7a12bc4c83ecf7991065f159b69ea726 505 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 351 371 - T 22-04-2016 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 PP4_RS26850 e2557317d17fe7687e63012a993816bc 190 PANTHER PTHR11776 2 188 6.6E-83 T 22-04-2016 PP4_RS26850 e2557317d17fe7687e63012a993816bc 190 Hamap MF_01184 Xanthine phosphoribosyltransferase [xpt]. 1 189 41.286 T 22-04-2016 IPR010079 Xanthine phosphoribosyltransferase GO:0016763|GO:0043101|GO:0046110 KEGG: 00230+2.4.2.22|UniPathway: UPA00602 PP4_RS26850 e2557317d17fe7687e63012a993816bc 190 Gene3D G3DSA:3.40.50.2020 2 188 8.2E-66 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like PP4_RS26850 e2557317d17fe7687e63012a993816bc 190 PANTHER PTHR11776:SF1 2 188 6.6E-83 T 22-04-2016 PP4_RS26850 e2557317d17fe7687e63012a993816bc 190 SUPERFAMILY SSF53271 2 187 1.21E-47 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like PP4_RS26850 e2557317d17fe7687e63012a993816bc 190 Pfam PF00156 Phosphoribosyl transferase domain 32 157 8.4E-7 T 22-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 PP4_RS26850 e2557317d17fe7687e63012a993816bc 190 TIGRFAM TIGR01744 XPRTase: xanthine phosphoribosyltransferase 2 189 3.9E-89 T 22-04-2016 IPR010079 Xanthine phosphoribosyltransferase GO:0016763|GO:0043101|GO:0046110 KEGG: 00230+2.4.2.22|UniPathway: UPA00602 PP4_RS26205 3ef73f1e2858bebcb213cc7bacf4285d 352 PANTHER PTHR24220 11 244 3.1E-118 T 22-04-2016 PP4_RS26205 3ef73f1e2858bebcb213cc7bacf4285d 352 PANTHER PTHR24220:SF150 11 244 3.1E-118 T 22-04-2016 PP4_RS26205 3ef73f1e2858bebcb213cc7bacf4285d 352 Pfam PF08402 TOBE domain 278 351 2.0E-4 T 22-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 PP4_RS26205 3ef73f1e2858bebcb213cc7bacf4285d 352 SUPERFAMILY SSF50331 242 351 1.36E-7 T 22-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal PP4_RS26205 3ef73f1e2858bebcb213cc7bacf4285d 352 SUPERFAMILY SSF52540 11 246 2.21E-87 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26205 3ef73f1e2858bebcb213cc7bacf4285d 352 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS26205 3ef73f1e2858bebcb213cc7bacf4285d 352 Gene3D G3DSA:3.40.50.300 11 240 9.9E-81 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26205 3ef73f1e2858bebcb213cc7bacf4285d 352 Pfam PF00005 ABC transporter 25 165 1.4E-33 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS26205 3ef73f1e2858bebcb213cc7bacf4285d 352 TIGRFAM TIGR03265 PhnT2: putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein 8 352 8.9E-162 T 22-04-2016 IPR017666 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT2 GO:0005524 PP4_RS26205 3ef73f1e2858bebcb213cc7bacf4285d 352 SMART SM00382 34 215 3.4E-18 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS20785 7529c34c818bc1722c0c3ee02813ac1b 201 Gene3D G3DSA:3.40.50.360 3 198 7.0E-71 T 22-04-2016 IPR029039 Flavoprotein-like domain PP4_RS20785 7529c34c818bc1722c0c3ee02813ac1b 201 Hamap MF_01017 NAD(P)H dehydrogenase (quinone). 3 198 31.237 T 22-04-2016 IPR010089 Flavoprotein WrbA GO:0010181|GO:0045892 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 PP4_RS20785 7529c34c818bc1722c0c3ee02813ac1b 201 SUPERFAMILY SSF52218 4 196 3.93E-63 T 22-04-2016 IPR029039 Flavoprotein-like domain PP4_RS20785 7529c34c818bc1722c0c3ee02813ac1b 201 TIGRFAM TIGR01755 flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 6 195 1.7E-44 T 22-04-2016 IPR010089 Flavoprotein WrbA GO:0010181|GO:0045892 KEGG: 00130+1.6.5.2|MetaCyc: PWY-7731 PP4_RS20785 7529c34c818bc1722c0c3ee02813ac1b 201 Pfam PF03358 NADPH-dependent FMN reductase 13 142 2.6E-10 T 22-04-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 PP4_RS20785 7529c34c818bc1722c0c3ee02813ac1b 201 ProSitePatterns PS00201 Flavodoxin signature. 8 24 - T 22-04-2016 IPR001226 Flavodoxin, conserved site GO:0009055|GO:0010181 PP4_RS20785 7529c34c818bc1722c0c3ee02813ac1b 201 PANTHER PTHR30546 3 200 8.0E-73 T 22-04-2016 PP4_RS19950 cf34eca4f352d3f59f85451ef1f5b564 200 SUPERFAMILY SSF47616 77 195 5.01E-30 T 22-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like PP4_RS19950 cf34eca4f352d3f59f85451ef1f5b564 200 PANTHER PTHR11260:SF143 1 200 9.5E-44 T 22-04-2016 PP4_RS19950 cf34eca4f352d3f59f85451ef1f5b564 200 Pfam PF00043 Glutathione S-transferase, C-terminal domain 124 193 8.7E-12 T 22-04-2016 IPR004046 Glutathione S-transferase, C-terminal PP4_RS19950 cf34eca4f352d3f59f85451ef1f5b564 200 Pfam PF13417 Glutathione S-transferase, N-terminal domain 5 76 2.2E-15 T 22-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 PP4_RS19950 cf34eca4f352d3f59f85451ef1f5b564 200 PANTHER PTHR11260 1 200 9.5E-44 T 22-04-2016 PP4_RS19950 cf34eca4f352d3f59f85451ef1f5b564 200 SUPERFAMILY SSF52833 1 76 2.4E-24 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS19950 cf34eca4f352d3f59f85451ef1f5b564 200 Gene3D G3DSA:1.20.1050.10 85 198 2.5E-34 T 22-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like PP4_RS19950 cf34eca4f352d3f59f85451ef1f5b564 200 Gene3D G3DSA:3.40.30.10 3 84 8.8E-27 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS18705 13f9f86dba59bdffe413074a1262167b 642 SUPERFAMILY SSF52540 307 525 6.36E-42 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS18705 13f9f86dba59bdffe413074a1262167b 642 SMART SM00382 342 512 7.4E-12 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS18705 13f9f86dba59bdffe413074a1262167b 642 SMART SM00382 28 227 2.9E-11 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS18705 13f9f86dba59bdffe413074a1262167b 642 PANTHER PTHR19211:SF45 545 583 1.8E-227 T 22-04-2016 PP4_RS18705 13f9f86dba59bdffe413074a1262167b 642 PANTHER PTHR19211:SF45 1 525 1.8E-227 T 22-04-2016 PP4_RS18705 13f9f86dba59bdffe413074a1262167b 642 Pfam PF16326 ABC transporter C-terminal domain 573 641 3.2E-19 T 22-04-2016 IPR032524 ABC transporter Uup, C-terminal GO:0003677 PP4_RS18705 13f9f86dba59bdffe413074a1262167b 642 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS18705 13f9f86dba59bdffe413074a1262167b 642 ProSitePatterns PS00211 ABC transporters family signature. 439 453 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS18705 13f9f86dba59bdffe413074a1262167b 642 SUPERFAMILY SSF52540 4 235 6.71E-48 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS18705 13f9f86dba59bdffe413074a1262167b 642 PANTHER PTHR19211 545 583 1.8E-227 T 22-04-2016 PP4_RS18705 13f9f86dba59bdffe413074a1262167b 642 PANTHER PTHR19211 1 525 1.8E-227 T 22-04-2016 PP4_RS18705 13f9f86dba59bdffe413074a1262167b 642 Gene3D G3DSA:3.40.50.300 319 539 1.0E-42 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS18705 13f9f86dba59bdffe413074a1262167b 642 Gene3D G3DSA:3.40.50.300 2 267 3.9E-50 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS18705 13f9f86dba59bdffe413074a1262167b 642 Pfam PF12848 ABC transporter 221 297 7.0E-8 T 22-04-2016 IPR032781 ABC-transporter extension domain PP4_RS18705 13f9f86dba59bdffe413074a1262167b 642 Pfam PF00005 ABC transporter 334 467 5.7E-22 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS18705 13f9f86dba59bdffe413074a1262167b 642 Pfam PF00005 ABC transporter 19 182 4.5E-23 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS16175 f467b2bea8518dceace2af834fe68390 652 Gene3D G3DSA:3.40.50.2300 515 638 4.3E-14 T 22-04-2016 PP4_RS16175 f467b2bea8518dceace2af834fe68390 652 SMART SM00387 378 490 2.3E-25 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS16175 f467b2bea8518dceace2af834fe68390 652 PANTHER PTHR24423:SF439 213 229 3.6E-65 T 22-04-2016 PP4_RS16175 f467b2bea8518dceace2af834fe68390 652 PANTHER PTHR24423:SF439 262 601 3.6E-65 T 22-04-2016 PP4_RS16175 f467b2bea8518dceace2af834fe68390 652 PANTHER PTHR24423 213 229 3.6E-65 T 22-04-2016 PP4_RS16175 f467b2bea8518dceace2af834fe68390 652 PANTHER PTHR24423 262 601 3.6E-65 T 22-04-2016 PP4_RS16175 f467b2bea8518dceace2af834fe68390 652 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 381 488 6.7E-16 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS16175 f467b2bea8518dceace2af834fe68390 652 PRINTS PR00344 Bacterial sensor protein C-terminal signature 474 487 2.4E-15 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS16175 f467b2bea8518dceace2af834fe68390 652 PRINTS PR00344 Bacterial sensor protein C-terminal signature 432 442 2.4E-15 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS16175 f467b2bea8518dceace2af834fe68390 652 PRINTS PR00344 Bacterial sensor protein C-terminal signature 414 428 2.4E-15 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS16175 f467b2bea8518dceace2af834fe68390 652 PRINTS PR00344 Bacterial sensor protein C-terminal signature 449 467 2.4E-15 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS16175 f467b2bea8518dceace2af834fe68390 652 SUPERFAMILY SSF52172 511 639 2.7E-13 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS16175 f467b2bea8518dceace2af834fe68390 652 Gene3D G3DSA:3.30.565.10 334 490 2.7E-35 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS16175 f467b2bea8518dceace2af834fe68390 652 SMART SM00448 515 629 0.0033 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS16175 f467b2bea8518dceace2af834fe68390 652 Pfam PF00072 Response regulator receiver domain 517 601 1.2E-7 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS16175 f467b2bea8518dceace2af834fe68390 652 SUPERFAMILY SSF55874 331 489 8.64E-34 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS24645 e4d36ebab86f9d84cfc43895be2d089f 535 Pfam PF01808 AICARFT/IMPCHase bienzyme 140 466 2.8E-114 T 22-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 PP4_RS24645 e4d36ebab86f9d84cfc43895be2d089f 535 Gene3D G3DSA:3.40.140.20 383 525 2.2E-60 T 22-04-2016 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 PP4_RS24645 e4d36ebab86f9d84cfc43895be2d089f 535 Gene3D G3DSA:3.40.140.20 254 377 2.0E-45 T 22-04-2016 IPR024051 AICAR transformylase domain KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 PP4_RS24645 e4d36ebab86f9d84cfc43895be2d089f 535 Gene3D G3DSA:3.40.50.1380 9 191 2.9E-79 T 22-04-2016 IPR011607 Methylglyoxal synthase-like domain PP4_RS24645 e4d36ebab86f9d84cfc43895be2d089f 535 PANTHER PTHR11692:SF2 8 535 0.0 T 22-04-2016 PP4_RS24645 e4d36ebab86f9d84cfc43895be2d089f 535 SUPERFAMILY SSF52335 10 197 6.54E-68 T 22-04-2016 IPR011607 Methylglyoxal synthase-like domain PP4_RS24645 e4d36ebab86f9d84cfc43895be2d089f 535 PIRSF PIRSF000414 4 535 4.8E-215 T 22-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 PP4_RS24645 e4d36ebab86f9d84cfc43895be2d089f 535 Pfam PF02142 MGS-like domain 22 135 2.5E-27 T 22-04-2016 IPR011607 Methylglyoxal synthase-like domain PP4_RS24645 e4d36ebab86f9d84cfc43895be2d089f 535 SUPERFAMILY SSF53927 222 535 6.92E-127 T 22-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 PP4_RS24645 e4d36ebab86f9d84cfc43895be2d089f 535 SMART SM00798 140 467 3.7E-204 T 22-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 PP4_RS24645 e4d36ebab86f9d84cfc43895be2d089f 535 SMART SM00851 22 135 4.6E-58 T 22-04-2016 IPR011607 Methylglyoxal synthase-like domain PP4_RS24645 e4d36ebab86f9d84cfc43895be2d089f 535 PANTHER PTHR11692 8 535 0.0 T 22-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 PP4_RS24645 e4d36ebab86f9d84cfc43895be2d089f 535 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 10 535 44.143 T 22-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 PP4_RS24645 e4d36ebab86f9d84cfc43895be2d089f 535 TIGRFAM TIGR00355 purH: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 11 535 4.5E-231 T 22-04-2016 IPR002695 AICARFT/IMPCHase bienzyme GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|UniPathway: UPA00074|UniPathway: UPA00074 PP4_RS21520 4e292f04c33f5847c4f645659a803dcd 691 PANTHER PTHR35399:SF2 12 690 3.8E-201 T 22-04-2016 PP4_RS21520 4e292f04c33f5847c4f645659a803dcd 691 Gene3D G3DSA:2.120.10.30 546 648 7.4E-6 T 22-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like PP4_RS21520 4e292f04c33f5847c4f645659a803dcd 691 PANTHER PTHR35399 12 690 3.8E-201 T 22-04-2016 PP4_RS21520 4e292f04c33f5847c4f645659a803dcd 691 SUPERFAMILY SSF63829 626 655 1.44E-6 T 22-04-2016 PP4_RS21520 4e292f04c33f5847c4f645659a803dcd 691 SUPERFAMILY SSF63829 408 441 1.44E-6 T 22-04-2016 PP4_RS21520 4e292f04c33f5847c4f645659a803dcd 691 SUPERFAMILY SSF63829 478 599 1.44E-6 T 22-04-2016 PP4_RS21520 4e292f04c33f5847c4f645659a803dcd 691 Pfam PF05787 Bacterial protein of unknown function (DUF839) 85 653 4.8E-143 T 22-04-2016 IPR008557 Protein of unknown function DUF839 PP4_RS24375 b5365175a71739cf10cd4318214e9141 623 PANTHER PTHR22674 70 440 6.9E-24 T 22-04-2016 PP4_RS24375 b5365175a71739cf10cd4318214e9141 623 Pfam PF07693 KAP family P-loop domain 16 388 7.3E-68 T 22-04-2016 IPR011646 KAP family P-loop domain PP4_RS24375 b5365175a71739cf10cd4318214e9141 623 SUPERFAMILY SSF52540 6 91 2.36E-14 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS24375 b5365175a71739cf10cd4318214e9141 623 SUPERFAMILY SSF52540 181 327 2.36E-14 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS24375 b5365175a71739cf10cd4318214e9141 623 Gene3D G3DSA:3.40.50.300 199 250 4.8E-4 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS24375 b5365175a71739cf10cd4318214e9141 623 Gene3D G3DSA:3.40.50.300 20 111 4.8E-4 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS21575 e0d4c704a57020f71392b14a0153c954 525 PANTHER PTHR11922 4 522 2.7E-281 T 22-04-2016 PP4_RS21575 e0d4c704a57020f71392b14a0153c954 525 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 212 525 8.3E-149 T 22-04-2016 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 PP4_RS21575 e0d4c704a57020f71392b14a0153c954 525 Gene3D G3DSA:3.40.50.620 223 399 1.1E-57 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS21575 e0d4c704a57020f71392b14a0153c954 525 SUPERFAMILY SSF52317 5 204 3.7E-55 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS21575 e0d4c704a57020f71392b14a0153c954 525 SUPERFAMILY SSF52402 197 420 2.21E-57 T 22-04-2016 PP4_RS21575 e0d4c704a57020f71392b14a0153c954 525 PRINTS PR00097 Anthranilate synthase component II signature 177 190 6.6E-6 T 22-04-2016 PP4_RS21575 e0d4c704a57020f71392b14a0153c954 525 PRINTS PR00097 Anthranilate synthase component II signature 54 63 6.6E-6 T 22-04-2016 PP4_RS21575 e0d4c704a57020f71392b14a0153c954 525 PRINTS PR00097 Anthranilate synthase component II signature 81 92 6.6E-6 T 22-04-2016 PP4_RS21575 e0d4c704a57020f71392b14a0153c954 525 Gene3D G3DSA:3.30.300.10 401 525 7.8E-53 T 22-04-2016 PP4_RS21575 e0d4c704a57020f71392b14a0153c954 525 Gene3D G3DSA:3.40.50.880 5 222 1.1E-59 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS21575 e0d4c704a57020f71392b14a0153c954 525 Pfam PF00958 GMP synthase C terminal domain 433 524 5.6E-41 T 22-04-2016 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 PP4_RS21575 e0d4c704a57020f71392b14a0153c954 525 SUPERFAMILY SSF54810 405 525 2.48E-49 T 22-04-2016 PP4_RS21575 e0d4c704a57020f71392b14a0153c954 525 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 10 205 1.3E-78 T 22-04-2016 IPR004739 GMP synthase, N-terminal GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 PP4_RS21575 e0d4c704a57020f71392b14a0153c954 525 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 7 525 55.606 T 22-04-2016 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|UniPathway: UPA00189 PP4_RS21575 e0d4c704a57020f71392b14a0153c954 525 PRINTS PR00096 Glutamine amidotransferase superfamily signature 54 63 4.1E-7 T 22-04-2016 PP4_RS21575 e0d4c704a57020f71392b14a0153c954 525 PRINTS PR00096 Glutamine amidotransferase superfamily signature 81 92 4.1E-7 T 22-04-2016 PP4_RS21575 e0d4c704a57020f71392b14a0153c954 525 PRINTS PR00096 Glutamine amidotransferase superfamily signature 177 190 4.1E-7 T 22-04-2016 PP4_RS21575 e0d4c704a57020f71392b14a0153c954 525 Pfam PF00117 Glutamine amidotransferase class-I 12 198 1.9E-36 T 22-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 PP4_RS21575 e0d4c704a57020f71392b14a0153c954 525 Pfam PF02540 NAD synthase 215 289 2.5E-7 T 22-04-2016 IPR022310 NAD/GMP synthase PP4_RS21575 e0d4c704a57020f71392b14a0153c954 525 PANTHER PTHR11922:SF2 4 522 2.7E-281 T 22-04-2016 PP4_RS21030 43b93ede03002a9429d9fafcc3ec34c2 185 PANTHER PTHR20982 1 185 9.9E-77 T 22-04-2016 IPR002661 Ribosome recycling factor GO:0006412 PP4_RS21030 43b93ede03002a9429d9fafcc3ec34c2 185 Pfam PF01765 Ribosome recycling factor 22 183 7.9E-59 T 22-04-2016 IPR023584 Ribosome recycling factor domain PP4_RS21030 43b93ede03002a9429d9fafcc3ec34c2 185 TIGRFAM TIGR00496 frr: ribosome recycling factor 10 185 1.5E-68 T 22-04-2016 IPR002661 Ribosome recycling factor GO:0006412 PP4_RS21030 43b93ede03002a9429d9fafcc3ec34c2 185 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 185 25.761 T 22-04-2016 IPR002661 Ribosome recycling factor GO:0006412 PP4_RS21030 43b93ede03002a9429d9fafcc3ec34c2 185 Gene3D G3DSA:1.10.132.20 67 185 3.6E-41 T 22-04-2016 IPR023584 Ribosome recycling factor domain PP4_RS21030 43b93ede03002a9429d9fafcc3ec34c2 185 SUPERFAMILY SSF55194 1 185 1.7E-67 T 22-04-2016 IPR023584 Ribosome recycling factor domain PP4_RS14950 83ba2bc308337c740b0a0537b970fa5c 733 Gene3D G3DSA:3.40.720.10 225 513 2.0E-31 T 22-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 PP4_RS14950 83ba2bc308337c740b0a0537b970fa5c 733 PANTHER PTHR10342:SF237 279 542 7.6E-50 T 22-04-2016 PP4_RS14950 83ba2bc308337c740b0a0537b970fa5c 733 SUPERFAMILY SSF53649 224 533 5.52E-50 T 22-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 PP4_RS14950 83ba2bc308337c740b0a0537b970fa5c 733 Pfam PF00884 Sulfatase 252 498 2.3E-33 T 22-04-2016 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 PP4_RS14950 83ba2bc308337c740b0a0537b970fa5c 733 PANTHER PTHR10342 279 542 7.6E-50 T 22-04-2016 PP4_RS13625 09ce418fe10d0892bb2a0c28e36e4a3e 357 SUPERFAMILY SSF51395 1 352 2.75E-102 T 22-04-2016 PP4_RS13625 09ce418fe10d0892bb2a0c28e36e4a3e 357 PANTHER PTHR22893 1 355 5.6E-133 T 22-04-2016 PP4_RS13625 09ce418fe10d0892bb2a0c28e36e4a3e 357 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 4 330 3.7E-71 T 22-04-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 PP4_RS13625 09ce418fe10d0892bb2a0c28e36e4a3e 357 Gene3D G3DSA:3.20.20.70 1 351 4.7E-109 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS13625 09ce418fe10d0892bb2a0c28e36e4a3e 357 PANTHER PTHR22893:SF14 1 355 5.6E-133 T 22-04-2016 PP4_RS14770 3e2445b3ef592e2348b67142e79a7159 173 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 10 158 7.8E-19 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS14770 3e2445b3ef592e2348b67142e79a7159 173 Gene3D G3DSA:1.10.1740.10 10 74 6.9E-15 T 22-04-2016 PP4_RS14770 3e2445b3ef592e2348b67142e79a7159 173 Gene3D G3DSA:1.10.10.10 102 161 1.3E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS14770 3e2445b3ef592e2348b67142e79a7159 173 SUPERFAMILY SSF88946 8 71 6.67E-13 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS14770 3e2445b3ef592e2348b67142e79a7159 173 SUPERFAMILY SSF88659 99 160 7.2E-16 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS14770 3e2445b3ef592e2348b67142e79a7159 173 Pfam PF08281 Sigma-70, region 4 108 156 7.2E-16 T 22-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS14770 3e2445b3ef592e2348b67142e79a7159 173 Pfam PF04542 Sigma-70 region 2 10 74 1.5E-8 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS14770 3e2445b3ef592e2348b67142e79a7159 173 PANTHER PTHR30173:SF6 10 163 4.7E-32 T 22-04-2016 PP4_RS14770 3e2445b3ef592e2348b67142e79a7159 173 PANTHER PTHR30173 10 163 4.7E-32 T 22-04-2016 PP4_RS23510 770642a283e82ec6d5c7d5b3e3b1a5b8 773 SUPERFAMILY SSF56601 317 339 1.0E-117 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS23510 770642a283e82ec6d5c7d5b3e3b1a5b8 773 SUPERFAMILY SSF56601 368 756 1.0E-117 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS23510 770642a283e82ec6d5c7d5b3e3b1a5b8 773 Gene3D G3DSA:3.40.710.10 338 750 4.6E-111 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS23510 770642a283e82ec6d5c7d5b3e3b1a5b8 773 Pfam PF00905 Penicillin binding protein transpeptidase domain 429 669 3.9E-17 T 22-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 PP4_RS23510 770642a283e82ec6d5c7d5b3e3b1a5b8 773 SUPERFAMILY SSF53955 164 357 1.86E-66 T 22-04-2016 IPR023346 Lysozyme-like domain PP4_RS23510 770642a283e82ec6d5c7d5b3e3b1a5b8 773 Gene3D G3DSA:3.30.2060.10 67 154 2.5E-24 T 22-04-2016 PP4_RS23510 770642a283e82ec6d5c7d5b3e3b1a5b8 773 Pfam PF00912 Transglycosylase 166 333 8.8E-57 T 22-04-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 PP4_RS23510 770642a283e82ec6d5c7d5b3e3b1a5b8 773 PANTHER PTHR32282:SF11 146 748 1.7E-253 T 22-04-2016 PP4_RS23510 770642a283e82ec6d5c7d5b3e3b1a5b8 773 TIGRFAM TIGR02071 PBP_1b: penicillin-binding protein 1B 24 749 0.0 T 22-04-2016 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00500+2.4.1.12|KEGG: 00550+3.4.-.-+2.4.1.129|KEGG: 00780+3.4.-.-|MetaCyc: PWY-1001|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 PP4_RS23510 770642a283e82ec6d5c7d5b3e3b1a5b8 773 PANTHER PTHR32282 146 748 1.7E-253 T 22-04-2016 PP4_RS23510 770642a283e82ec6d5c7d5b3e3b1a5b8 773 Gene3D G3DSA:1.20.5.100 12 51 5.5E-8 T 22-04-2016 PP4_RS23510 770642a283e82ec6d5c7d5b3e3b1a5b8 773 PIRSF PIRSF002799 1 773 0.0 T 22-04-2016 IPR011813 Penicillin-binding protein 1B GO:0008233|GO:0008955|GO:0009252|GO:0009274|GO:0046677 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00500+2.4.1.12|KEGG: 00550+3.4.-.-+2.4.1.129|KEGG: 00780+3.4.-.-|MetaCyc: PWY-1001|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 PP4_RS23510 770642a283e82ec6d5c7d5b3e3b1a5b8 773 Pfam PF14814 Bifunctional transglycosylase second domain 69 152 8.2E-24 T 22-04-2016 IPR028166 Bifunctional transglycosylase second domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00500+2.4.1.12|KEGG: 00550+3.4.-.-+2.4.1.129|KEGG: 00780+3.4.-.-|MetaCyc: PWY-1001|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 PP4_RS23510 770642a283e82ec6d5c7d5b3e3b1a5b8 773 Gene3D G3DSA:1.10.3810.10 166 337 2.2E-65 T 22-04-2016 PP4_RS19295 e40fafc534b4b0746d0352aeb484badc 435 Gene3D G3DSA:3.90.190.20 298 424 5.9E-33 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PP4_RS19295 e40fafc534b4b0746d0352aeb484badc 435 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 45 68 - T 22-04-2016 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 PP4_RS19295 e40fafc534b4b0746d0352aeb484badc 435 PANTHER PTHR11136:SF0 8 431 2.9E-112 T 22-04-2016 PP4_RS19295 e40fafc534b4b0746d0352aeb484badc 435 PANTHER PTHR11136 8 431 2.9E-112 T 22-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 PP4_RS19295 e40fafc534b4b0746d0352aeb484badc 435 TIGRFAM TIGR01499 folC: bifunctional protein FolC 25 421 8.8E-94 T 22-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 PP4_RS19295 e40fafc534b4b0746d0352aeb484badc 435 SUPERFAMILY SSF53244 294 423 9.52E-27 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PP4_RS19295 e40fafc534b4b0746d0352aeb484badc 435 Gene3D G3DSA:3.40.1190.10 6 283 5.3E-87 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PP4_RS19295 e40fafc534b4b0746d0352aeb484badc 435 SUPERFAMILY SSF53623 4 283 3.51E-86 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PP4_RS19295 e40fafc534b4b0746d0352aeb484badc 435 Pfam PF08245 Mur ligase middle domain 47 187 6.2E-12 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PP4_RS19295 e40fafc534b4b0746d0352aeb484badc 435 PIRSF PIRSF001563 1 427 1.4E-98 T 22-04-2016 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|UniPathway: UPA00850 PP4_RS12545 c00a4105cf23b13b55dd115bf33d47f8 436 Gene3D G3DSA:1.20.1250.20 11 213 3.8E-23 T 22-04-2016 PP4_RS12545 c00a4105cf23b13b55dd115bf33d47f8 436 Gene3D G3DSA:1.20.1250.20 235 419 4.6E-24 T 22-04-2016 PP4_RS12545 c00a4105cf23b13b55dd115bf33d47f8 436 Pfam PF07690 Major Facilitator Superfamily 19 384 1.0E-23 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS12545 c00a4105cf23b13b55dd115bf33d47f8 436 PANTHER PTHR23508:SF11 6 420 6.6E-240 T 22-04-2016 PP4_RS12545 c00a4105cf23b13b55dd115bf33d47f8 436 ProSitePatterns PS00217 Sugar transport proteins signature 2. 123 148 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PP4_RS12545 c00a4105cf23b13b55dd115bf33d47f8 436 PANTHER PTHR23508 6 420 6.6E-240 T 22-04-2016 PP4_RS12545 c00a4105cf23b13b55dd115bf33d47f8 436 SUPERFAMILY SSF103473 12 416 6.41E-63 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS12545 c00a4105cf23b13b55dd115bf33d47f8 436 ProSitePatterns PS00216 Sugar transport proteins signature 1. 293 310 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PP4_RS26570 c74c46df220fe2399865bdb73d67c7b4 184 SUPERFAMILY SSF101327 7 171 1.31E-41 T 22-04-2016 IPR011978 Uncharacterised protein family UPF0149 PP4_RS26570 c74c46df220fe2399865bdb73d67c7b4 184 Pfam PF03695 Uncharacterised protein family (UPF0149) 13 172 1.3E-32 T 22-04-2016 IPR011978 Uncharacterised protein family UPF0149 PP4_RS26570 c74c46df220fe2399865bdb73d67c7b4 184 Hamap MF_00346 UPF0149 protein YgfB [ygfB]. 4 182 29.683 T 22-04-2016 IPR011978 Uncharacterised protein family UPF0149 PP4_RS26570 c74c46df220fe2399865bdb73d67c7b4 184 PANTHER PTHR37528 1 184 2.5E-28 T 22-04-2016 PP4_RS23960 aff376a4bf1abf2296b360dd5d79ca96 306 PANTHER PTHR32322 1 291 5.8E-128 T 22-04-2016 PP4_RS23960 aff376a4bf1abf2296b360dd5d79ca96 306 SUPERFAMILY SSF103481 45 146 2.09E-10 T 22-04-2016 PP4_RS23960 aff376a4bf1abf2296b360dd5d79ca96 306 PANTHER PTHR32322:SF8 1 291 5.8E-128 T 22-04-2016 PP4_RS23960 aff376a4bf1abf2296b360dd5d79ca96 306 Pfam PF00892 EamA-like transporter family 15 142 1.9E-14 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS23960 aff376a4bf1abf2296b360dd5d79ca96 306 Pfam PF00892 EamA-like transporter family 152 285 2.2E-16 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS23960 aff376a4bf1abf2296b360dd5d79ca96 306 SUPERFAMILY SSF103481 191 291 2.22E-12 T 22-04-2016 PP4_RS22120 d08a94637eeec762515d0f5eb34b85de 322 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 298 6.3E-18 T 22-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 PP4_RS22120 d08a94637eeec762515d0f5eb34b85de 322 Gene3D G3DSA:3.40.50.300 4 255 1.0E-79 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS22120 d08a94637eeec762515d0f5eb34b85de 322 PANTHER PTHR24220:SF493 6 319 5.2E-188 T 22-04-2016 PP4_RS22120 d08a94637eeec762515d0f5eb34b85de 322 PANTHER PTHR24220 6 319 5.2E-188 T 22-04-2016 PP4_RS22120 d08a94637eeec762515d0f5eb34b85de 322 SMART SM00382 39 231 4.6E-17 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS22120 d08a94637eeec762515d0f5eb34b85de 322 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 233 317 3.4E-27 T 22-04-2016 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 PP4_RS22120 d08a94637eeec762515d0f5eb34b85de 322 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS22120 d08a94637eeec762515d0f5eb34b85de 322 Pfam PF00005 ABC transporter 30 182 7.8E-35 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS22120 d08a94637eeec762515d0f5eb34b85de 322 SUPERFAMILY SSF52540 5 253 1.42E-72 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS09620 5e2e532b16f835b934d93320193b910a 267 PANTHER PTHR30502 1 265 2.5E-116 T 22-04-2016 PP4_RS09620 5e2e532b16f835b934d93320193b910a 267 TIGRFAM TIGR02311 HpaI: 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 6 254 2.2E-129 T 22-04-2016 IPR012689 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase GO:0010124|GO:0018802 KEGG: 00350+4.1.2.52|UniPathway: UPA00208 PP4_RS09620 5e2e532b16f835b934d93320193b910a 267 SUPERFAMILY SSF51621 2 254 1.13E-85 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PP4_RS09620 5e2e532b16f835b934d93320193b910a 267 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 18 243 1.8E-64 T 22-04-2016 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 PP4_RS09620 5e2e532b16f835b934d93320193b910a 267 PANTHER PTHR30502:SF5 1 265 2.5E-116 T 22-04-2016 PP4_RS09620 5e2e532b16f835b934d93320193b910a 267 Gene3D G3DSA:3.20.20.60 2 254 2.5E-83 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PP4_RS11525 04b945d018a98c352bebdea6adb1baa5 287 Pfam PF03466 LysR substrate binding domain 87 283 8.7E-33 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS11525 04b945d018a98c352bebdea6adb1baa5 287 SUPERFAMILY SSF46785 1 109 2.03E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS11525 04b945d018a98c352bebdea6adb1baa5 287 Gene3D G3DSA:3.40.190.10 88 192 6.2E-23 T 22-04-2016 PP4_RS11525 04b945d018a98c352bebdea6adb1baa5 287 SUPERFAMILY SSF53850 88 281 9.41E-33 T 22-04-2016 PP4_RS11525 04b945d018a98c352bebdea6adb1baa5 287 PANTHER PTHR30126 1 239 1.5E-59 T 22-04-2016 PP4_RS11525 04b945d018a98c352bebdea6adb1baa5 287 Gene3D G3DSA:1.10.10.10 1 83 1.1E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS11525 04b945d018a98c352bebdea6adb1baa5 287 Gene3D G3DSA:3.40.190.10 193 254 3.0E-7 T 22-04-2016 PP4_RS11525 04b945d018a98c352bebdea6adb1baa5 287 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 3.9E-21 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS01495 c7eec243c10a50b218c17e26235691df 240 PANTHER PTHR26402 3 231 5.9E-75 T 22-04-2016 PP4_RS01495 c7eec243c10a50b218c17e26235691df 240 SUPERFAMILY SSF46894 139 231 4.25E-19 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS01495 c7eec243c10a50b218c17e26235691df 240 Gene3D G3DSA:1.10.10.10 138 232 1.0E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS01495 c7eec243c10a50b218c17e26235691df 240 SMART SM00448 3 113 1.1E-42 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS01495 c7eec243c10a50b218c17e26235691df 240 Gene3D G3DSA:3.40.50.2300 2 131 1.1E-40 T 22-04-2016 PP4_RS01495 c7eec243c10a50b218c17e26235691df 240 Pfam PF00486 Transcriptional regulatory protein, C terminal 155 231 1.2E-16 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS01495 c7eec243c10a50b218c17e26235691df 240 PANTHER PTHR26402:SF292 3 231 5.9E-75 T 22-04-2016 PP4_RS01495 c7eec243c10a50b218c17e26235691df 240 SUPERFAMILY SSF52172 3 126 3.98E-41 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS01495 c7eec243c10a50b218c17e26235691df 240 SMART SM00862 155 231 7.0E-17 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS01495 c7eec243c10a50b218c17e26235691df 240 Pfam PF00072 Response regulator receiver domain 6 114 1.6E-29 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS26030 aef51c785391267a9077ddb02e7935cf 198 Gene3D G3DSA:3.90.950.10 2 195 5.4E-74 T 22-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like PP4_RS26030 aef51c785391267a9077ddb02e7935cf 198 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 7 194 4.8E-55 T 22-04-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 PP4_RS26030 aef51c785391267a9077ddb02e7935cf 198 Hamap MF_01405 dITP/XTP pyrophosphatase [rdgB]. 5 197 47.248 T 22-04-2016 IPR020922 Non-canonical purine NTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 PP4_RS26030 aef51c785391267a9077ddb02e7935cf 198 Pfam PF01725 Ham1 family 7 192 2.0E-53 T 22-04-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 PP4_RS26030 aef51c785391267a9077ddb02e7935cf 198 SUPERFAMILY SSF52972 2 195 1.49E-67 T 22-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like PP4_RS26030 aef51c785391267a9077ddb02e7935cf 198 PANTHER PTHR11067 1 195 1.6E-74 T 22-04-2016 IPR002637 Ham1-like protein GO:0016787 KEGG: 00230+3.6.1.19|KEGG: 00240+3.6.1.19|KEGG: 00983+3.6.1.19|MetaCyc: PWY-7206 PP4_RS26030 aef51c785391267a9077ddb02e7935cf 198 PANTHER PTHR11067:SF9 1 195 1.6E-74 T 22-04-2016 PP4_RS07155 3137160cd884fbc143b8c2a7d61dc25f 374 PANTHER PTHR10108 59 223 5.7E-17 T 22-04-2016 PP4_RS07155 3137160cd884fbc143b8c2a7d61dc25f 374 SUPERFAMILY SSF53335 256 353 9.3E-5 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS07155 3137160cd884fbc143b8c2a7d61dc25f 374 Gene3D G3DSA:3.40.50.720 281 360 1.7E-6 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS07155 3137160cd884fbc143b8c2a7d61dc25f 374 PANTHER PTHR10108:SF739 59 223 5.7E-17 T 22-04-2016 PP4_RS07155 3137160cd884fbc143b8c2a7d61dc25f 374 Pfam PF13489 Methyltransferase domain 75 218 5.9E-24 T 22-04-2016 PP4_RS07155 3137160cd884fbc143b8c2a7d61dc25f 374 Gene3D G3DSA:3.40.50.150 64 234 8.1E-30 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS07155 3137160cd884fbc143b8c2a7d61dc25f 374 SUPERFAMILY SSF53335 64 234 8.29E-31 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS21995 478750c7cb460da070339d0e0bcf88f8 479 Pfam PF01523 Putative modulator of DNA gyrase 38 329 6.4E-66 T 22-04-2016 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PP4_RS21995 478750c7cb460da070339d0e0bcf88f8 479 PIRSF PIRSF004919 18 478 1.0E-139 T 22-04-2016 IPR025502 TldD KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PP4_RS21995 478750c7cb460da070339d0e0bcf88f8 479 PANTHER PTHR30624 15 479 8.4E-251 T 22-04-2016 PP4_RS21995 478750c7cb460da070339d0e0bcf88f8 479 SUPERFAMILY SSF111283 21 477 9.02E-132 T 22-04-2016 PP4_RS21995 478750c7cb460da070339d0e0bcf88f8 479 PANTHER PTHR30624:SF4 15 479 8.4E-251 T 22-04-2016 PP4_RS22965 3208abb9612123b97310ac7bba4d6539 272 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 20 242 3.4E-95 T 22-04-2016 IPR022488 Polyphosphate kinase-2-related PP4_RS22965 3208abb9612123b97310ac7bba4d6539 272 PIRSF PIRSF028756 1 271 4.2E-113 T 22-04-2016 IPR016898 Polyphosphate kinase 2 PP4_RS22965 3208abb9612123b97310ac7bba4d6539 272 SUPERFAMILY SSF52540 48 236 1.07E-26 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS22965 3208abb9612123b97310ac7bba4d6539 272 PANTHER PTHR34383 9 272 4.5E-137 T 22-04-2016 PP4_RS22965 3208abb9612123b97310ac7bba4d6539 272 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 19 243 1.4E-105 T 22-04-2016 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 PP4_RS22965 3208abb9612123b97310ac7bba4d6539 272 PANTHER PTHR34383:SF1 9 272 4.5E-137 T 22-04-2016 PP4_RS22965 3208abb9612123b97310ac7bba4d6539 272 Gene3D G3DSA:3.40.50.300 14 254 3.1E-98 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS10170 5b7cf1e2d57682ad5fd53fde9852fc29 287 Gene3D G3DSA:3.40.50.620 216 280 3.7E-4 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS10170 5b7cf1e2d57682ad5fd53fde9852fc29 287 Pfam PF01297 Zinc-uptake complex component A periplasmic 133 264 1.7E-15 T 22-04-2016 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 PP4_RS10170 5b7cf1e2d57682ad5fd53fde9852fc29 287 Gene3D G3DSA:3.40.50.1980 74 183 1.8E-6 T 22-04-2016 PP4_RS10170 5b7cf1e2d57682ad5fd53fde9852fc29 287 PANTHER PTHR30477:SF15 54 239 7.2E-47 T 22-04-2016 PP4_RS10170 5b7cf1e2d57682ad5fd53fde9852fc29 287 PANTHER PTHR30477 54 239 7.2E-47 T 22-04-2016 PP4_RS10170 5b7cf1e2d57682ad5fd53fde9852fc29 287 SUPERFAMILY SSF53807 23 284 5.4E-34 T 22-04-2016 PP4_RS10110 7f507e79d59e8668c4c38ac0f4bd5592 140 Pfam PF12680 SnoaL-like domain 12 104 1.0E-11 T 22-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain PP4_RS10110 7f507e79d59e8668c4c38ac0f4bd5592 140 SUPERFAMILY SSF54427 3 116 1.58E-23 T 22-04-2016 IPR032710 NTF2-like domain PP4_RS10110 7f507e79d59e8668c4c38ac0f4bd5592 140 Gene3D G3DSA:3.10.450.50 12 119 1.7E-13 T 22-04-2016 IPR032710 NTF2-like domain PP4_RS08955 f27e25e56defa52afcfb5aa3d5d754b6 459 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 369 389 - T 22-04-2016 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 PP4_RS08955 f27e25e56defa52afcfb5aa3d5d754b6 459 PANTHER PTHR11119 1 457 4.3E-246 T 22-04-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 PP4_RS08955 f27e25e56defa52afcfb5aa3d5d754b6 459 TIGRFAM TIGR03173 pbuX: xanthine permease 34 453 2.3E-127 T 22-04-2016 IPR017588 Uric acid permease UacT-like GO:0006810|GO:0016021 PP4_RS08955 f27e25e56defa52afcfb5aa3d5d754b6 459 PANTHER PTHR11119:SF44 1 457 4.3E-246 T 22-04-2016 PP4_RS08955 f27e25e56defa52afcfb5aa3d5d754b6 459 Pfam PF00860 Permease family 31 421 8.0E-96 T 22-04-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 PP4_RS08955 f27e25e56defa52afcfb5aa3d5d754b6 459 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 31 449 7.2E-121 T 22-04-2016 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 PP4_RS15170 29d9a1d2ecb5397cd10a55e018840dac 127 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 9.0E-10 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS15170 29d9a1d2ecb5397cd10a55e018840dac 127 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 9.0E-10 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS15170 29d9a1d2ecb5397cd10a55e018840dac 127 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 36 56 9.0E-10 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS15170 29d9a1d2ecb5397cd10a55e018840dac 127 SUPERFAMILY SSF46955 1 107 3.22E-28 T 22-04-2016 IPR009061 Putative DNA-binding domain PP4_RS15170 29d9a1d2ecb5397cd10a55e018840dac 127 Pfam PF13411 MerR HTH family regulatory protein 2 67 3.4E-17 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS15170 29d9a1d2ecb5397cd10a55e018840dac 127 Gene3D G3DSA:1.10.1660.10 56 119 1.9E-10 T 22-04-2016 PP4_RS15170 29d9a1d2ecb5397cd10a55e018840dac 127 Gene3D G3DSA:1.10.1660.10 1 55 8.9E-24 T 22-04-2016 PP4_RS15170 29d9a1d2ecb5397cd10a55e018840dac 127 PANTHER PTHR30204 1 100 8.9E-22 T 22-04-2016 PP4_RS15170 29d9a1d2ecb5397cd10a55e018840dac 127 SMART SM00422 1 69 8.5E-25 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS22690 51f7d175bf15c112811d320a32c9187c 240 SUPERFAMILY SSF103088 108 223 1.19E-38 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS22690 51f7d175bf15c112811d320a32c9187c 240 PANTHER PTHR30128 44 224 8.9E-57 T 22-04-2016 PP4_RS22690 51f7d175bf15c112811d320a32c9187c 240 PRINTS PR01021 OMPA domain signature 151 166 5.5E-12 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PP4_RS22690 51f7d175bf15c112811d320a32c9187c 240 PRINTS PR01021 OMPA domain signature 166 182 5.5E-12 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PP4_RS22690 51f7d175bf15c112811d320a32c9187c 240 PRINTS PR01021 OMPA domain signature 121 143 5.5E-12 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PP4_RS22690 51f7d175bf15c112811d320a32c9187c 240 Gene3D G3DSA:3.30.1330.60 98 221 1.6E-41 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS22690 51f7d175bf15c112811d320a32c9187c 240 Pfam PF00691 OmpA family 120 215 1.2E-23 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS22690 51f7d175bf15c112811d320a32c9187c 240 Pfam PF13488 Glycine zipper 45 90 5.0E-8 T 22-04-2016 PP4_RS05495 e071894983624ecbccbd5b888b46315b 371 Pfam PF13458 Periplasmic binding protein 25 360 7.2E-63 T 22-04-2016 IPR028081 Leucine-binding protein domain PP4_RS05495 e071894983624ecbccbd5b888b46315b 371 Gene3D G3DSA:3.40.50.2300 24 224 2.3E-65 T 22-04-2016 PP4_RS05495 e071894983624ecbccbd5b888b46315b 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 67 85 1.8E-48 T 22-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 PP4_RS05495 e071894983624ecbccbd5b888b46315b 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 329 344 1.8E-48 T 22-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 PP4_RS05495 e071894983624ecbccbd5b888b46315b 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 254 272 1.8E-48 T 22-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 PP4_RS05495 e071894983624ecbccbd5b888b46315b 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 26 42 1.8E-48 T 22-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 PP4_RS05495 e071894983624ecbccbd5b888b46315b 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 48 64 1.8E-48 T 22-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 PP4_RS05495 e071894983624ecbccbd5b888b46315b 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 277 290 1.8E-48 T 22-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 PP4_RS05495 e071894983624ecbccbd5b888b46315b 371 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 88 98 1.8E-48 T 22-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 PP4_RS05495 e071894983624ecbccbd5b888b46315b 371 PANTHER PTHR30483 9 359 8.4E-152 T 22-04-2016 PP4_RS05495 e071894983624ecbccbd5b888b46315b 371 SUPERFAMILY SSF53822 24 364 1.07E-92 T 22-04-2016 IPR028082 Periplasmic binding protein-like I PP4_RS05495 e071894983624ecbccbd5b888b46315b 371 PANTHER PTHR30483:SF16 9 359 8.4E-152 T 22-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 PP4_RS06295 fffae62e966b752e6e9c306909fd34f1 281 PANTHER PTHR22908 1 235 3.6E-75 T 22-04-2016 PP4_RS06295 fffae62e966b752e6e9c306909fd34f1 281 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 29 173 3.4E-13 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 PP4_RS06295 fffae62e966b752e6e9c306909fd34f1 281 SUPERFAMILY SSF52540 7 250 7.23E-37 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS06295 fffae62e966b752e6e9c306909fd34f1 281 SMART SM00382 25 183 5.0E-8 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS06295 fffae62e966b752e6e9c306909fd34f1 281 Gene3D G3DSA:3.40.50.300 8 200 1.3E-33 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25410 7d9941e48c0c8000bdca5ddc11fc06c8 469 SUPERFAMILY SSF52283 10 198 2.66E-106 T 22-04-2016 PP4_RS25410 7d9941e48c0c8000bdca5ddc11fc06c8 469 SUPERFAMILY SSF52283 382 469 2.66E-106 T 22-04-2016 PP4_RS25410 7d9941e48c0c8000bdca5ddc11fc06c8 469 ProSitePatterns PS00738 S-adenosyl-L-homocysteine hydrolase signature 1. 84 98 - T 22-04-2016 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 PP4_RS25410 7d9941e48c0c8000bdca5ddc11fc06c8 469 Gene3D G3DSA:3.40.50.1480 12 200 1.3E-128 T 22-04-2016 PP4_RS25410 7d9941e48c0c8000bdca5ddc11fc06c8 469 Gene3D G3DSA:3.40.50.1480 382 469 1.3E-128 T 22-04-2016 PP4_RS25410 7d9941e48c0c8000bdca5ddc11fc06c8 469 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 199 381 1.7E-57 T 22-04-2016 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 PP4_RS25410 7d9941e48c0c8000bdca5ddc11fc06c8 469 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 12 149 6.8E-70 T 22-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 PP4_RS25410 7d9941e48c0c8000bdca5ddc11fc06c8 469 SMART SM00996 12 468 7.0E-275 T 22-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 PP4_RS25410 7d9941e48c0c8000bdca5ddc11fc06c8 469 SUPERFAMILY SSF51735 199 381 3.01E-51 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS25410 7d9941e48c0c8000bdca5ddc11fc06c8 469 PIRSF PIRSF001109 2 469 1.4E-185 T 22-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 PP4_RS25410 7d9941e48c0c8000bdca5ddc11fc06c8 469 Gene3D G3DSA:3.40.50.720 201 380 3.3E-44 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS25410 7d9941e48c0c8000bdca5ddc11fc06c8 469 Hamap MF_00563 Adenosylhomocysteinase [ahcY]. 8 461 43.533 T 22-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 PP4_RS25410 7d9941e48c0c8000bdca5ddc11fc06c8 469 SMART SM00997 199 381 1.8E-82 T 22-04-2016 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 PP4_RS25410 7d9941e48c0c8000bdca5ddc11fc06c8 469 ProSitePatterns PS00739 S-adenosyl-L-homocysteine hydrolase signature 2. 221 237 - T 22-04-2016 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 PP4_RS25410 7d9941e48c0c8000bdca5ddc11fc06c8 469 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 13 461 1.6E-152 T 22-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 PP4_RS25410 7d9941e48c0c8000bdca5ddc11fc06c8 469 PANTHER PTHR23420 8 469 0.0 T 22-04-2016 IPR000043 Adenosylhomocysteinase GO:0004013|GO:0006730 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041|UniPathway: UPA00314 PP4_RS16735 6efa48f6398cf6699ff92d54503a90cf 383 Gene3D G3DSA:3.20.20.30 308 373 6.6E-85 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS16735 6efa48f6398cf6699ff92d54503a90cf 383 Gene3D G3DSA:3.20.20.30 36 272 6.6E-85 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS16735 6efa48f6398cf6699ff92d54503a90cf 383 SUPERFAMILY SSF51679 35 372 8.37E-80 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS16735 6efa48f6398cf6699ff92d54503a90cf 383 Pfam PF00296 Luciferase-like monooxygenase 39 346 2.2E-69 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS16735 6efa48f6398cf6699ff92d54503a90cf 383 PANTHER PTHR30011 52 378 8.4E-86 T 22-04-2016 PP4_RS16735 6efa48f6398cf6699ff92d54503a90cf 383 PANTHER PTHR30011:SF1 52 378 8.4E-86 T 22-04-2016 PP4_RS04070 238a5e63a5abfb7eb3a82bce78e19029 475 Pfam PF08238 Sel1 repeat 307 340 9.0E-4 T 22-04-2016 IPR006597 Sel1-like repeat PP4_RS04070 238a5e63a5abfb7eb3a82bce78e19029 475 Pfam PF08238 Sel1 repeat 343 376 2.8 T 22-04-2016 IPR006597 Sel1-like repeat PP4_RS04070 238a5e63a5abfb7eb3a82bce78e19029 475 Pfam PF08238 Sel1 repeat 93 127 9.2 T 22-04-2016 IPR006597 Sel1-like repeat PP4_RS04070 238a5e63a5abfb7eb3a82bce78e19029 475 SUPERFAMILY SSF81901 32 142 1.83E-8 T 22-04-2016 PP4_RS04070 238a5e63a5abfb7eb3a82bce78e19029 475 SUPERFAMILY SSF81901 251 407 6.19E-21 T 22-04-2016 PP4_RS04070 238a5e63a5abfb7eb3a82bce78e19029 475 PANTHER PTHR11102:SF11 267 447 8.0E-37 T 22-04-2016 PP4_RS04070 238a5e63a5abfb7eb3a82bce78e19029 475 PANTHER PTHR11102:SF11 30 161 8.0E-37 T 22-04-2016 PP4_RS04070 238a5e63a5abfb7eb3a82bce78e19029 475 PANTHER PTHR11102 267 447 8.0E-37 T 22-04-2016 PP4_RS04070 238a5e63a5abfb7eb3a82bce78e19029 475 PANTHER PTHR11102 30 161 8.0E-37 T 22-04-2016 PP4_RS04070 238a5e63a5abfb7eb3a82bce78e19029 475 Gene3D G3DSA:1.25.40.10 163 430 8.4E-26 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS04070 238a5e63a5abfb7eb3a82bce78e19029 475 Gene3D G3DSA:1.25.40.10 32 141 1.3E-11 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS04070 238a5e63a5abfb7eb3a82bce78e19029 475 SMART SM00671 306 341 3.0E-5 T 22-04-2016 IPR006597 Sel1-like repeat PP4_RS04070 238a5e63a5abfb7eb3a82bce78e19029 475 SMART SM00671 92 128 6.7 T 22-04-2016 IPR006597 Sel1-like repeat PP4_RS04070 238a5e63a5abfb7eb3a82bce78e19029 475 SMART SM00671 378 413 300.0 T 22-04-2016 IPR006597 Sel1-like repeat PP4_RS04070 238a5e63a5abfb7eb3a82bce78e19029 475 SMART SM00671 342 377 0.029 T 22-04-2016 IPR006597 Sel1-like repeat PP4_RS08080 fb2fcfb4492840bfae31d1f7dddfeb83 643 PANTHER PTHR24423 243 633 2.3E-151 T 22-04-2016 PP4_RS08080 fb2fcfb4492840bfae31d1f7dddfeb83 643 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 377 492 1.9E-26 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS08080 fb2fcfb4492840bfae31d1f7dddfeb83 643 SMART SM00388 264 329 1.1E-22 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS08080 fb2fcfb4492840bfae31d1f7dddfeb83 643 Gene3D G3DSA:3.30.565.10 331 498 1.7E-45 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS08080 fb2fcfb4492840bfae31d1f7dddfeb83 643 SUPERFAMILY SSF47384 249 328 4.71E-22 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS08080 fb2fcfb4492840bfae31d1f7dddfeb83 643 SMART SM00387 377 493 1.6E-36 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS08080 fb2fcfb4492840bfae31d1f7dddfeb83 643 SUPERFAMILY SSF52172 516 633 2.42E-39 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS08080 fb2fcfb4492840bfae31d1f7dddfeb83 643 Pfam PF00072 Response regulator receiver domain 517 628 8.7E-28 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS08080 fb2fcfb4492840bfae31d1f7dddfeb83 643 PANTHER PTHR24423:SF382 243 633 2.3E-151 T 22-04-2016 PP4_RS08080 fb2fcfb4492840bfae31d1f7dddfeb83 643 Gene3D G3DSA:3.40.50.2300 516 635 1.6E-43 T 22-04-2016 PP4_RS08080 fb2fcfb4492840bfae31d1f7dddfeb83 643 Pfam PF00672 HAMP domain 171 238 2.1E-11 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS08080 fb2fcfb4492840bfae31d1f7dddfeb83 643 SUPERFAMILY SSF158472 191 239 1.44E-6 T 22-04-2016 PP4_RS08080 fb2fcfb4492840bfae31d1f7dddfeb83 643 Pfam PF00512 His Kinase A (phospho-acceptor) domain 264 328 6.1E-19 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS08080 fb2fcfb4492840bfae31d1f7dddfeb83 643 SMART SM00448 515 628 1.1E-37 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS08080 fb2fcfb4492840bfae31d1f7dddfeb83 643 SUPERFAMILY SSF55874 318 498 4.64E-44 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS08080 fb2fcfb4492840bfae31d1f7dddfeb83 643 Pfam PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) 36 107 3.1E-9 T 22-04-2016 IPR019247 Histidine kinase BarA, N-terminal PP4_RS08080 fb2fcfb4492840bfae31d1f7dddfeb83 643 SMART SM00304 190 242 1.9E-5 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS08080 fb2fcfb4492840bfae31d1f7dddfeb83 643 Gene3D G3DSA:1.10.287.130 256 325 2.2E-16 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS08080 fb2fcfb4492840bfae31d1f7dddfeb83 643 PRINTS PR00344 Bacterial sensor protein C-terminal signature 453 471 6.4E-16 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS08080 fb2fcfb4492840bfae31d1f7dddfeb83 643 PRINTS PR00344 Bacterial sensor protein C-terminal signature 418 432 6.4E-16 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS08080 fb2fcfb4492840bfae31d1f7dddfeb83 643 PRINTS PR00344 Bacterial sensor protein C-terminal signature 477 490 6.4E-16 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS08080 fb2fcfb4492840bfae31d1f7dddfeb83 643 PRINTS PR00344 Bacterial sensor protein C-terminal signature 436 446 6.4E-16 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS05765 e26d753fe4830a87da4a514cdffee9fa 150 SUPERFAMILY SSF55729 7 146 4.65E-26 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS05765 e26d753fe4830a87da4a514cdffee9fa 150 PANTHER PTHR23091:SF277 14 139 2.6E-25 T 22-04-2016 PP4_RS05765 e26d753fe4830a87da4a514cdffee9fa 150 Pfam PF13673 Acetyltransferase (GNAT) domain 44 132 8.3E-19 T 22-04-2016 IPR000182 GNAT domain GO:0008080 PP4_RS05765 e26d753fe4830a87da4a514cdffee9fa 150 Gene3D G3DSA:3.40.630.30 6 140 4.4E-25 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS05765 e26d753fe4830a87da4a514cdffee9fa 150 PANTHER PTHR23091 14 139 2.6E-25 T 22-04-2016 PP4_RS20005 497bf24c7d00a6ec0d9ce0f6c6c3c943 420 SUPERFAMILY SSF48179 206 299 4.59E-29 T 22-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PP4_RS20005 497bf24c7d00a6ec0d9ce0f6c6c3c943 420 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 5 189 2.6E-58 T 22-04-2016 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 PP4_RS20005 497bf24c7d00a6ec0d9ce0f6c6c3c943 420 Gene3D G3DSA:1.20.5.100 206 235 3.8E-6 T 22-04-2016 PP4_RS20005 497bf24c7d00a6ec0d9ce0f6c6c3c943 420 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 206 293 1.8E-27 T 22-04-2016 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 PP4_RS20005 497bf24c7d00a6ec0d9ce0f6c6c3c943 420 Gene3D G3DSA:3.40.50.720 5 202 3.0E-57 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS20005 497bf24c7d00a6ec0d9ce0f6c6c3c943 420 PIRSF PIRSF500136 1 420 6.8E-146 T 22-04-2016 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 PP4_RS20005 497bf24c7d00a6ec0d9ce0f6c6c3c943 420 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 325 418 2.2E-15 T 22-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 PP4_RS20005 497bf24c7d00a6ec0d9ce0f6c6c3c943 420 SUPERFAMILY SSF52413 317 417 1.19E-18 T 22-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 PP4_RS20005 497bf24c7d00a6ec0d9ce0f6c6c3c943 420 Gene3D G3DSA:3.40.50.720 237 418 4.8E-42 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS20005 497bf24c7d00a6ec0d9ce0f6c6c3c943 420 PANTHER PTHR11374 1 400 2.3E-175 T 22-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 PP4_RS20005 497bf24c7d00a6ec0d9ce0f6c6c3c943 420 SUPERFAMILY SSF51735 5 199 7.99E-44 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS20005 497bf24c7d00a6ec0d9ce0f6c6c3c943 420 PANTHER PTHR11374:SF4 1 400 2.3E-175 T 22-04-2016 PP4_RS20005 497bf24c7d00a6ec0d9ce0f6c6c3c943 420 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 5 411 1.9E-119 T 22-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 PP4_RS20005 497bf24c7d00a6ec0d9ce0f6c6c3c943 420 PIRSF PIRSF000124 4 419 7.9E-75 T 22-04-2016 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 PP4_RS20005 497bf24c7d00a6ec0d9ce0f6c6c3c943 420 SMART SM00984 325 420 1.3E-12 T 22-04-2016 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 PP4_RS15370 9bda83d60cc133a4bc14bdf6e2b2965c 466 SUPERFAMILY SSF56300 143 429 8.42E-54 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS15370 9bda83d60cc133a4bc14bdf6e2b2965c 466 Gene3D G3DSA:3.60.21.10 142 433 1.9E-63 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS15370 9bda83d60cc133a4bc14bdf6e2b2965c 466 Gene3D G3DSA:2.60.40.380 43 138 9.1E-11 T 22-04-2016 IPR015914 Purple acid phosphatase, N-terminal GO:0003993|GO:0046872 PP4_RS15370 9bda83d60cc133a4bc14bdf6e2b2965c 466 PANTHER PTHR22953:SF0 41 406 9.9E-55 T 22-04-2016 PP4_RS15370 9bda83d60cc133a4bc14bdf6e2b2965c 466 PANTHER PTHR22953 41 406 9.9E-55 T 22-04-2016 PP4_RS15370 9bda83d60cc133a4bc14bdf6e2b2965c 466 Pfam PF16656 Purple acid Phosphatase, N-terminal domain 41 136 2.8E-13 T 22-04-2016 IPR015914 Purple acid phosphatase, N-terminal GO:0003993|GO:0046872 PP4_RS15370 9bda83d60cc133a4bc14bdf6e2b2965c 466 Pfam PF00149 Calcineurin-like phosphoesterase 146 344 1.3E-16 T 22-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 PP4_RS15370 9bda83d60cc133a4bc14bdf6e2b2965c 466 SUPERFAMILY SSF49363 40 137 6.8E-11 T 22-04-2016 IPR008963 Purple acid phosphatase-like, N-terminal GO:0003993|GO:0046872 PP4_RS10785 7019e9b1d07fc843aa4dad8bd495caac 300 PANTHER PTHR30118:SF8 1 300 1.0E-90 T 22-04-2016 PP4_RS10785 7019e9b1d07fc843aa4dad8bd495caac 300 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 69 1.2E-15 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS10785 7019e9b1d07fc843aa4dad8bd495caac 300 SUPERFAMILY SSF53850 93 296 1.99E-33 T 22-04-2016 PP4_RS10785 7019e9b1d07fc843aa4dad8bd495caac 300 PANTHER PTHR30118 1 300 1.0E-90 T 22-04-2016 PP4_RS10785 7019e9b1d07fc843aa4dad8bd495caac 300 Gene3D G3DSA:3.40.190.10 93 176 1.7E-21 T 22-04-2016 PP4_RS10785 7019e9b1d07fc843aa4dad8bd495caac 300 Gene3D G3DSA:3.40.190.10 273 299 1.7E-21 T 22-04-2016 PP4_RS10785 7019e9b1d07fc843aa4dad8bd495caac 300 SUPERFAMILY SSF46785 7 90 1.02E-16 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS10785 7019e9b1d07fc843aa4dad8bd495caac 300 Gene3D G3DSA:3.40.190.10 184 268 1.6E-22 T 22-04-2016 PP4_RS10785 7019e9b1d07fc843aa4dad8bd495caac 300 Gene3D G3DSA:1.10.10.10 2 89 5.6E-28 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS10785 7019e9b1d07fc843aa4dad8bd495caac 300 Pfam PF03466 LysR substrate binding domain 101 296 1.8E-20 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS11755 623f71b315d1e963c38b65779c117d6e 290 SUPERFAMILY SSF103481 195 288 3.27E-12 T 22-04-2016 PP4_RS11755 623f71b315d1e963c38b65779c117d6e 290 Pfam PF00892 EamA-like transporter family 155 286 3.0E-16 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS11755 623f71b315d1e963c38b65779c117d6e 290 SUPERFAMILY SSF103481 52 148 6.02E-7 T 22-04-2016 PP4_RS11755 623f71b315d1e963c38b65779c117d6e 290 PANTHER PTHR32322 5 290 3.3E-34 T 22-04-2016 PP4_RS11755 623f71b315d1e963c38b65779c117d6e 290 PANTHER PTHR32322:SF9 5 290 3.3E-34 T 22-04-2016 PP4_RS14605 5fe348a13d770621e2aabda8ef5d9c06 295 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 69 274 1.1E-59 T 22-04-2016 IPR017732 Type IV / VI secretion system, DotU PP4_RS14605 5fe348a13d770621e2aabda8ef5d9c06 295 PANTHER PTHR38033 58 294 4.2E-40 T 22-04-2016 PP4_RS14605 5fe348a13d770621e2aabda8ef5d9c06 295 Pfam PF09850 Type VI secretion system protein DotU 71 273 9.4E-53 T 22-04-2016 IPR017732 Type IV / VI secretion system, DotU PP4_RS14605 5fe348a13d770621e2aabda8ef5d9c06 295 PANTHER PTHR38033:SF1 58 294 4.2E-40 T 22-04-2016 PP4_RS24515 1766be7720756733708f53d6f4db161a 345 Gene3D G3DSA:1.10.8.60 146 223 4.1E-35 T 22-04-2016 PP4_RS24515 1766be7720756733708f53d6f4db161a 345 Gene3D G3DSA:1.20.272.20 224 340 2.2E-44 T 22-04-2016 PP4_RS24515 1766be7720756733708f53d6f4db161a 345 PANTHER PTHR34388 1 345 9.2E-83 T 22-04-2016 PP4_RS24515 1766be7720756733708f53d6f4db161a 345 TIGRFAM TIGR01128 holA: DNA polymerase III, delta subunit 16 336 7.5E-117 T 22-04-2016 IPR005790 DNA polymerase III, delta subunit GO:0003677|GO:0006260 PP4_RS24515 1766be7720756733708f53d6f4db161a 345 Pfam PF14840 Processivity clamp loader gamma complex DNA pol III C-term 216 340 7.3E-16 T 22-04-2016 IPR032780 DNA polymerase III subunit delta, C-terminal KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS24515 1766be7720756733708f53d6f4db161a 345 SUPERFAMILY SSF52540 1 211 4.64E-51 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS24515 1766be7720756733708f53d6f4db161a 345 Pfam PF06144 DNA polymerase III, delta subunit 20 191 1.6E-32 T 22-04-2016 IPR010372 DNA polymerase III delta, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0009360 PP4_RS24515 1766be7720756733708f53d6f4db161a 345 SUPERFAMILY SSF48019 213 337 1.87E-34 T 22-04-2016 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_216|Reactome: REACT_22172|Reactome: REACT_383 PP4_RS24515 1766be7720756733708f53d6f4db161a 345 Gene3D G3DSA:3.40.50.300 1 140 4.5E-55 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS05405 ca15d851edf4d085b9233442532d4fc7 91 PANTHER PTHR38775 2 89 1.5E-15 T 22-04-2016 PP4_RS05405 ca15d851edf4d085b9233442532d4fc7 91 PANTHER PTHR38775:SF1 2 89 1.5E-15 T 22-04-2016 PP4_RS05405 ca15d851edf4d085b9233442532d4fc7 91 Pfam PF06611 Protein of unknown function (DUF1145) 4 59 3.7E-19 T 22-04-2016 IPR009525 Protein of unknown function DUF1145 PP4_RS08785 582f2b370d3e3091e959830fbe4dd631 500 PANTHER PTHR10283:SF93 12 168 2.9E-231 T 22-04-2016 PP4_RS08785 582f2b370d3e3091e959830fbe4dd631 500 PANTHER PTHR10283:SF93 198 500 2.9E-231 T 22-04-2016 PP4_RS08785 582f2b370d3e3091e959830fbe4dd631 500 Hamap MF_01599 Na(+)/H(+) antiporter NhaB [nhaB]. 1 500 316.197 T 22-04-2016 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 PP4_RS08785 582f2b370d3e3091e959830fbe4dd631 500 Pfam PF06450 Bacterial Na+/H+ antiporter B (NhaB) 2 498 2.9E-221 T 22-04-2016 IPR004671 Na+/H+ antiporter NhaB GO:0006814|GO:0015385|GO:0016021 PP4_RS08785 582f2b370d3e3091e959830fbe4dd631 500 PANTHER PTHR10283 12 168 2.9E-231 T 22-04-2016 PP4_RS08785 582f2b370d3e3091e959830fbe4dd631 500 PANTHER PTHR10283 198 500 2.9E-231 T 22-04-2016 PP4_RS08700 0a7711de49023fc87c96f4908f15c45b 580 Pfam PF11941 Domain of unknown function (DUF3459) 484 570 1.5E-18 T 22-04-2016 IPR022567 Glycosyl hydrolase, C-terminal (DUF3459) PP4_RS08700 0a7711de49023fc87c96f4908f15c45b 580 SMART SM00642 105 436 8.8E-8 T 22-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 PP4_RS08700 0a7711de49023fc87c96f4908f15c45b 580 PIRSF PIRSF006337 1 573 7.2E-223 T 22-04-2016 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00520+3.2.1.14|MetaCyc: PWY-2661|MetaCyc: PWY-6902|UniPathway: UPA00299 PP4_RS08700 0a7711de49023fc87c96f4908f15c45b 580 TIGRFAM TIGR02402 trehalose_TreZ: malto-oligosyltrehalose trehalohydrolase 15 541 2.5E-199 T 22-04-2016 IPR012768 Malto-oligosyltrehalose trehalohydrolase GO:0004553|GO:0005992 KEGG: 00520+3.2.1.14|MetaCyc: PWY-2661|MetaCyc: PWY-6902|UniPathway: UPA00299 PP4_RS08700 0a7711de49023fc87c96f4908f15c45b 580 PANTHER PTHR10357 470 544 7.6E-102 T 22-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 PP4_RS08700 0a7711de49023fc87c96f4908f15c45b 580 PANTHER PTHR10357 3 441 7.6E-102 T 22-04-2016 IPR015902 Glycoside hydrolase, family 13 GO:0003824 PP4_RS08700 0a7711de49023fc87c96f4908f15c45b 580 SUPERFAMILY SSF51445 86 495 2.32E-93 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily PP4_RS08700 0a7711de49023fc87c96f4908f15c45b 580 Gene3D G3DSA:2.60.40.10 5 88 1.7E-27 T 22-04-2016 IPR013783 Immunoglobulin-like fold PP4_RS08700 0a7711de49023fc87c96f4908f15c45b 580 PANTHER PTHR10357:SF110 470 544 7.6E-102 T 22-04-2016 PP4_RS08700 0a7711de49023fc87c96f4908f15c45b 580 PANTHER PTHR10357:SF110 3 441 7.6E-102 T 22-04-2016 PP4_RS08700 0a7711de49023fc87c96f4908f15c45b 580 Gene3D G3DSA:3.20.20.80 102 495 4.9E-70 T 22-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PP4_RS08700 0a7711de49023fc87c96f4908f15c45b 580 SUPERFAMILY SSF81296 5 88 4.37E-19 T 22-04-2016 IPR014756 Immunoglobulin E-set PP4_RS08700 0a7711de49023fc87c96f4908f15c45b 580 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 5 65 7.8E-5 T 22-04-2016 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 PP4_RS08700 0a7711de49023fc87c96f4908f15c45b 580 Pfam PF00128 Alpha amylase, catalytic domain 120 206 9.5E-10 T 22-04-2016 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 PP4_RS16480 8580a7ec47ebbfc3595f04353466174f 151 SUPERFAMILY SSF54637 1 148 2.11E-37 T 22-04-2016 IPR029069 HotDog domain PP4_RS16480 8580a7ec47ebbfc3595f04353466174f 151 Gene3D G3DSA:3.10.129.10 5 148 9.7E-38 T 22-04-2016 IPR029069 HotDog domain PP4_RS16480 8580a7ec47ebbfc3595f04353466174f 151 PANTHER PTHR13078 7 148 4.8E-28 T 22-04-2016 PP4_RS16480 8580a7ec47ebbfc3595f04353466174f 151 Pfam PF01575 MaoC like domain 20 112 8.4E-18 T 22-04-2016 IPR002539 MaoC-like domain PP4_RS22535 0874cc8b9db1683037f1cc9640958742 394 ProSitePatterns PS00543 HlyD family secretion proteins signature. 359 381 - T 22-04-2016 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 PP4_RS22535 0874cc8b9db1683037f1cc9640958742 394 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 374 394 1.8E-39 T 22-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 PP4_RS22535 0874cc8b9db1683037f1cc9640958742 394 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 256 277 1.8E-39 T 22-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 PP4_RS22535 0874cc8b9db1683037f1cc9640958742 394 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 30 53 1.8E-39 T 22-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 PP4_RS22535 0874cc8b9db1683037f1cc9640958742 394 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 72 92 1.8E-39 T 22-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 PP4_RS22535 0874cc8b9db1683037f1cc9640958742 394 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 289 313 1.8E-39 T 22-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 PP4_RS22535 0874cc8b9db1683037f1cc9640958742 394 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 313 336 1.8E-39 T 22-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 PP4_RS22535 0874cc8b9db1683037f1cc9640958742 394 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 359 374 1.8E-39 T 22-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 PP4_RS22535 0874cc8b9db1683037f1cc9640958742 394 SUPERFAMILY SSF111369 69 120 4.45E-6 T 22-04-2016 PP4_RS22535 0874cc8b9db1683037f1cc9640958742 394 PANTHER PTHR30386:SF4 25 394 3.3E-127 T 22-04-2016 PP4_RS22535 0874cc8b9db1683037f1cc9640958742 394 PANTHER PTHR30386 25 394 3.3E-127 T 22-04-2016 PP4_RS22535 0874cc8b9db1683037f1cc9640958742 394 Pfam PF13437 HlyD family secretion protein 243 347 4.5E-17 T 22-04-2016 PP4_RS22535 0874cc8b9db1683037f1cc9640958742 394 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 185 394 3.4E-66 T 22-04-2016 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 PP4_RS22535 0874cc8b9db1683037f1cc9640958742 394 Gene3D G3DSA:2.40.50.100 64 94 1.7E-15 T 22-04-2016 PP4_RS22535 0874cc8b9db1683037f1cc9640958742 394 Gene3D G3DSA:2.40.50.100 241 275 1.7E-15 T 22-04-2016 PP4_RS22535 0874cc8b9db1683037f1cc9640958742 394 Pfam PF13533 Biotin-lipoyl like 69 101 5.4E-7 T 22-04-2016 PP4_RS06635 52e33d1a66e605888f19ec032d85cbb2 199 PANTHER PTHR21392 3 187 8.1E-60 T 22-04-2016 PP4_RS06635 52e33d1a66e605888f19ec032d85cbb2 199 Pfam PF03942 DTW domain 3 183 3.8E-48 T 22-04-2016 IPR005636 DTW PP4_RS06635 52e33d1a66e605888f19ec032d85cbb2 199 SMART SM01144 2 188 1.7E-67 T 22-04-2016 IPR005636 DTW PP4_RS04590 c29f481b73395030f46af7bc48476726 193 Gene3D G3DSA:2.40.128.110 21 131 6.3E-7 T 22-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like PP4_RS04590 c29f481b73395030f46af7bc48476726 193 PIRSF PIRSF029811 2 193 1.1E-59 T 22-04-2016 IPR027016 Uncharacterised protein with YceI domain PP4_RS04590 c29f481b73395030f46af7bc48476726 193 SMART SM00867 22 191 1.9E-14 T 22-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like PP4_RS04590 c29f481b73395030f46af7bc48476726 193 SUPERFAMILY SSF101874 21 191 3.92E-18 T 22-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like PP4_RS04590 c29f481b73395030f46af7bc48476726 193 Pfam PF04264 YceI-like domain 23 162 1.2E-6 T 22-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like PP4_RS06670 c56bb4ea600cc510b51d9898db635c5d 93 TIGRFAM TIGR02174 CXXU_selWTH: selT/selW/selH selenoprotein domain 8 79 8.3E-23 T 22-04-2016 IPR011893 Selenoprotein, Rdx type PP4_RS06670 c56bb4ea600cc510b51d9898db635c5d 93 Gene3D G3DSA:3.40.30.10 4 93 1.6E-44 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS06670 c56bb4ea600cc510b51d9898db635c5d 93 SUPERFAMILY SSF52833 6 89 2.91E-29 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS06670 c56bb4ea600cc510b51d9898db635c5d 93 Pfam PF10262 Rdx family 8 80 2.6E-33 T 22-04-2016 IPR011893 Selenoprotein, Rdx type PP4_RS06670 c56bb4ea600cc510b51d9898db635c5d 93 PANTHER PTHR36417 1 93 1.4E-60 T 22-04-2016 PP4_RS06670 c56bb4ea600cc510b51d9898db635c5d 93 PANTHER PTHR36417:SF1 1 93 1.4E-60 T 22-04-2016 PP4_RS10130 74033a334a7d23556faa2a53881d160d 413 SUPERFAMILY SSF54373 260 340 1.18E-8 T 22-04-2016 PP4_RS10130 74033a334a7d23556faa2a53881d160d 413 Pfam PF01266 FAD dependent oxidoreductase 31 378 8.7E-57 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PP4_RS10130 74033a334a7d23556faa2a53881d160d 413 PANTHER PTHR13847:SF44 29 397 1.4E-61 T 22-04-2016 PP4_RS10130 74033a334a7d23556faa2a53881d160d 413 SUPERFAMILY SSF51905 30 250 5.18E-51 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS10130 74033a334a7d23556faa2a53881d160d 413 SUPERFAMILY SSF51905 340 402 5.18E-51 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS10130 74033a334a7d23556faa2a53881d160d 413 Gene3D G3DSA:3.50.50.60 171 249 8.0E-50 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS10130 74033a334a7d23556faa2a53881d160d 413 Gene3D G3DSA:3.50.50.60 25 108 8.0E-50 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS10130 74033a334a7d23556faa2a53881d160d 413 Gene3D G3DSA:3.50.50.60 340 398 8.0E-50 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS10130 74033a334a7d23556faa2a53881d160d 413 Gene3D G3DSA:3.30.9.10 113 170 3.3E-18 T 22-04-2016 PP4_RS10130 74033a334a7d23556faa2a53881d160d 413 Gene3D G3DSA:3.30.9.10 250 339 3.3E-18 T 22-04-2016 PP4_RS10130 74033a334a7d23556faa2a53881d160d 413 PANTHER PTHR13847 29 397 1.4E-61 T 22-04-2016 PP4_RS11560 00fd7a8387102bf1323859db865919e2 540 Gene3D G3DSA:3.40.50.980 171 196 3.6E-34 T 22-04-2016 PP4_RS11560 00fd7a8387102bf1323859db865919e2 540 Gene3D G3DSA:3.40.50.980 19 131 3.6E-34 T 22-04-2016 PP4_RS11560 00fd7a8387102bf1323859db865919e2 540 PANTHER PTHR24095 1 540 2.4E-276 T 22-04-2016 PP4_RS11560 00fd7a8387102bf1323859db865919e2 540 Gene3D G3DSA:2.30.38.10 369 436 7.1E-22 T 22-04-2016 PP4_RS11560 00fd7a8387102bf1323859db865919e2 540 SUPERFAMILY SSF56801 12 538 8.9E-145 T 22-04-2016 PP4_RS11560 00fd7a8387102bf1323859db865919e2 540 PANTHER PTHR24095:SF169 1 540 2.4E-276 T 22-04-2016 PP4_RS11560 00fd7a8387102bf1323859db865919e2 540 Pfam PF13193 AMP-binding enzyme C-terminal domain 452 527 5.5E-22 T 22-04-2016 IPR025110 AMP-binding enzyme C-terminal domain PP4_RS11560 00fd7a8387102bf1323859db865919e2 540 Pfam PF00501 AMP-binding enzyme 25 443 1.1E-94 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PP4_RS11560 00fd7a8387102bf1323859db865919e2 540 Gene3D G3DSA:3.30.300.30 440 538 7.6E-32 T 22-04-2016 PP4_RS11560 00fd7a8387102bf1323859db865919e2 540 Gene3D G3DSA:3.40.50.980 197 343 5.6E-33 T 22-04-2016 PP4_RS23555 bdec65b516099400b0a74e3917ebcff6 390 Pfam PF00155 Aminotransferase class I and II 33 381 1.5E-52 T 22-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PP4_RS23555 bdec65b516099400b0a74e3917ebcff6 390 Gene3D G3DSA:3.40.640.10 49 253 5.9E-55 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS23555 bdec65b516099400b0a74e3917ebcff6 390 PANTHER PTHR11751 14 386 6.7E-195 T 22-04-2016 PP4_RS23555 bdec65b516099400b0a74e3917ebcff6 390 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 231 244 - T 22-04-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 PP4_RS23555 bdec65b516099400b0a74e3917ebcff6 390 SUPERFAMILY SSF53383 5 387 2.02E-97 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS23555 bdec65b516099400b0a74e3917ebcff6 390 PANTHER PTHR11751:SF401 14 386 6.7E-195 T 22-04-2016 PP4_RS23555 bdec65b516099400b0a74e3917ebcff6 390 Gene3D G3DSA:3.90.1150.10 254 386 1.3E-35 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS26495 b6b6287bf158438eaad102fa9a6389b5 380 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 106 143 - T 22-04-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 PP4_RS26495 b6b6287bf158438eaad102fa9a6389b5 380 Pfam PF01546 Peptidase family M20/M25/M40 73 375 1.1E-30 T 22-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 PP4_RS26495 b6b6287bf158438eaad102fa9a6389b5 380 SUPERFAMILY SSF55031 177 291 9.72E-22 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain PP4_RS26495 b6b6287bf158438eaad102fa9a6389b5 380 Hamap MF_01108 Acetylornithine deacetylase [argE]. 1 379 51.505 T 22-04-2016 IPR010169 Acetylornithine deacetylase (ArgE) GO:0005737|GO:0006526|GO:0008270|GO:0008777|GO:0050897 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154|UniPathway: UPA00068 PP4_RS26495 b6b6287bf158438eaad102fa9a6389b5 380 SUPERFAMILY SSF53187 297 378 9.43E-55 T 22-04-2016 PP4_RS26495 b6b6287bf158438eaad102fa9a6389b5 380 SUPERFAMILY SSF53187 6 176 9.43E-55 T 22-04-2016 PP4_RS26495 b6b6287bf158438eaad102fa9a6389b5 380 TIGRFAM TIGR01892 AcOrn-deacetyl: acetylornithine deacetylase (ArgE) 10 373 1.1E-117 T 22-04-2016 IPR010169 Acetylornithine deacetylase (ArgE) GO:0005737|GO:0006526|GO:0008270|GO:0008777|GO:0050897 KEGG: 00220+3.5.1.16|MetaCyc: PWY-5154|UniPathway: UPA00068 PP4_RS26495 b6b6287bf158438eaad102fa9a6389b5 380 PANTHER PTHR11014 6 378 2.5E-186 T 22-04-2016 PP4_RS26495 b6b6287bf158438eaad102fa9a6389b5 380 Gene3D G3DSA:3.30.70.360 186 287 8.8E-24 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain PP4_RS26495 b6b6287bf158438eaad102fa9a6389b5 380 Pfam PF07687 Peptidase dimerisation domain 174 284 2.1E-24 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain PP4_RS26495 b6b6287bf158438eaad102fa9a6389b5 380 PANTHER PTHR11014:SF75 6 378 2.5E-186 T 22-04-2016 PP4_RS26495 b6b6287bf158438eaad102fa9a6389b5 380 Gene3D G3DSA:3.40.630.10 8 185 7.4E-57 T 22-04-2016 PP4_RS26495 b6b6287bf158438eaad102fa9a6389b5 380 Gene3D G3DSA:3.40.630.10 319 378 7.4E-57 T 22-04-2016 PP4_RS19360 853f86d9909abd79f939d77166ccfe51 147 SUPERFAMILY SSF49764 10 141 4.88E-19 T 22-04-2016 IPR008978 HSP20-like chaperone PP4_RS19360 853f86d9909abd79f939d77166ccfe51 147 PANTHER PTHR11527 1 147 1.1E-79 T 22-04-2016 IPR031107 Small heat shock protein HSP20 PP4_RS19360 853f86d9909abd79f939d77166ccfe51 147 PANTHER PTHR11527:SF127 1 147 1.1E-79 T 22-04-2016 PP4_RS19360 853f86d9909abd79f939d77166ccfe51 147 Pfam PF00011 Hsp20/alpha crystallin family 44 140 7.1E-16 T 22-04-2016 IPR002068 Alpha crystallin/Hsp20 domain PP4_RS19360 853f86d9909abd79f939d77166ccfe51 147 Gene3D G3DSA:2.60.40.790 17 140 6.1E-16 T 22-04-2016 IPR008978 HSP20-like chaperone PP4_RS08930 ed94832a219fedff8d45c96da2c0e080 333 SUPERFAMILY SSF52418 88 330 1.7E-57 T 22-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 PP4_RS08930 ed94832a219fedff8d45c96da2c0e080 333 Gene3D G3DSA:3.40.1030.10 93 328 2.6E-37 T 22-04-2016 IPR000312 Glycosyl transferase, family 3 GO:0008152|GO:0016757 PP4_RS08930 ed94832a219fedff8d45c96da2c0e080 333 Gene3D G3DSA:1.20.970.10 24 83 8.3E-19 T 22-04-2016 PP4_RS08930 ed94832a219fedff8d45c96da2c0e080 333 PANTHER PTHR10515 1 278 1.8E-48 T 22-04-2016 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 PP4_RS08930 ed94832a219fedff8d45c96da2c0e080 333 Pfam PF02885 Glycosyl transferase family, helical bundle domain 29 83 3.2E-17 T 22-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain PP4_RS08930 ed94832a219fedff8d45c96da2c0e080 333 SUPERFAMILY SSF47648 24 84 4.84E-16 T 22-04-2016 IPR017459 Glycosyl transferase family 3, N-terminal domain PP4_RS20980 631c37afcbfcf50ba48915b9199e92b2 375 PANTHER PTHR30372:SF0 1 373 1.3E-131 T 22-04-2016 PP4_RS20980 631c37afcbfcf50ba48915b9199e92b2 375 Gene3D G3DSA:3.40.50.2000 158 341 3.2E-7 T 22-04-2016 PP4_RS20980 631c37afcbfcf50ba48915b9199e92b2 375 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 2 371 1.5E-127 T 22-04-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 PP4_RS20980 631c37afcbfcf50ba48915b9199e92b2 375 Hamap MF_00392 Lipid-A-disaccharide synthase [lpxB]. 3 373 42.625 T 22-04-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 PP4_RS20980 631c37afcbfcf50ba48915b9199e92b2 375 SUPERFAMILY SSF53756 6 373 1.47E-36 T 22-04-2016 PP4_RS20980 631c37afcbfcf50ba48915b9199e92b2 375 Pfam PF02684 Lipid-A-disaccharide synthetase 6 357 3.0E-121 T 22-04-2016 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00500+2.4.1.18|KEGG: 00540+2.4.1.182|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00359 PP4_RS20980 631c37afcbfcf50ba48915b9199e92b2 375 PANTHER PTHR30372 1 373 1.3E-131 T 22-04-2016 PP4_RS14115 2c93e4db46d397ce5507cf89d1da175f 347 PANTHER PTHR11732:SF191 13 329 1.0E-162 T 22-04-2016 PP4_RS14115 2c93e4db46d397ce5507cf89d1da175f 347 SUPERFAMILY SSF51430 13 329 1.18E-88 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain PP4_RS14115 2c93e4db46d397ce5507cf89d1da175f 347 PANTHER PTHR11732 13 329 1.0E-162 T 22-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta PP4_RS14115 2c93e4db46d397ce5507cf89d1da175f 347 Gene3D G3DSA:3.20.20.100 12 330 1.3E-84 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain PP4_RS14115 2c93e4db46d397ce5507cf89d1da175f 347 Pfam PF00248 Aldo/keto reductase family 28 329 7.6E-65 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain PP4_RS20650 215dc36723436e167459212f976e24a5 216 PANTHER PTHR21712:SF31 1 212 1.2E-86 T 22-04-2016 PP4_RS20650 215dc36723436e167459212f976e24a5 216 TIGRFAM TIGR02476 BluB: 5,6-dimethylbenzimidazole synthase 6 207 8.6E-70 T 22-04-2016 IPR012825 5,6-dimethylbenzimidazole synthase BluB KEGG: 00740+1.13.11.79|MetaCyc: PWY-5508|MetaCyc: PWY-5523 PP4_RS20650 215dc36723436e167459212f976e24a5 216 PANTHER PTHR21712 1 212 1.2E-86 T 22-04-2016 PP4_RS20650 215dc36723436e167459212f976e24a5 216 SUPERFAMILY SSF55469 14 213 4.97E-45 T 22-04-2016 IPR000415 Nitroreductase-like GO:0016491 PP4_RS20650 215dc36723436e167459212f976e24a5 216 Gene3D G3DSA:3.40.109.10 7 214 1.6E-43 T 22-04-2016 IPR000415 Nitroreductase-like GO:0016491 PP4_RS20650 215dc36723436e167459212f976e24a5 216 Pfam PF00881 Nitroreductase family 18 181 2.9E-26 T 22-04-2016 IPR029479 Nitroreductase PP4_RS27385 1500834f9f422744b4da3a24109225ad 178 Pfam PF00213 ATP synthase delta (OSCP) subunit 7 176 4.3E-53 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 PP4_RS27385 1500834f9f422744b4da3a24109225ad 178 TIGRFAM TIGR01145 ATP_synt_delta: ATP synthase F1, delta subunit 8 176 5.2E-47 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 PP4_RS27385 1500834f9f422744b4da3a24109225ad 178 PRINTS PR00125 ATP synthase delta subunit signature 151 169 5.3E-21 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 PP4_RS27385 1500834f9f422744b4da3a24109225ad 178 PRINTS PR00125 ATP synthase delta subunit signature 86 100 5.3E-21 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 PP4_RS27385 1500834f9f422744b4da3a24109225ad 178 PRINTS PR00125 ATP synthase delta subunit signature 75 86 5.3E-21 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 PP4_RS27385 1500834f9f422744b4da3a24109225ad 178 PRINTS PR00125 ATP synthase delta subunit signature 7 26 5.3E-21 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 PP4_RS27385 1500834f9f422744b4da3a24109225ad 178 PRINTS PR00125 ATP synthase delta subunit signature 136 151 5.3E-21 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 PP4_RS27385 1500834f9f422744b4da3a24109225ad 178 Hamap MF_01416 ATP synthase subunit delta [atpD]. 3 178 18.599 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 PP4_RS27385 1500834f9f422744b4da3a24109225ad 178 SUPERFAMILY SSF47928 3 105 4.58E-24 T 22-04-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain PP4_RS27385 1500834f9f422744b4da3a24109225ad 178 PANTHER PTHR11910 8 177 2.2E-50 T 22-04-2016 IPR000711 ATPase, OSCP/delta subunit GO:0015986|GO:0046933 PP4_RS27385 1500834f9f422744b4da3a24109225ad 178 Gene3D G3DSA:1.10.520.20 2 106 1.5E-30 T 22-04-2016 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain PP4_RS10710 aae11dbcfd6c18544619bde60b37d0d7 373 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 100 120 2.6E-23 T 22-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 PP4_RS10710 aae11dbcfd6c18544619bde60b37d0d7 373 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 141 167 2.6E-23 T 22-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 PP4_RS10710 aae11dbcfd6c18544619bde60b37d0d7 373 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 79 99 2.6E-23 T 22-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 PP4_RS10710 aae11dbcfd6c18544619bde60b37d0d7 373 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 58 73 2.6E-23 T 22-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 PP4_RS10710 aae11dbcfd6c18544619bde60b37d0d7 373 PRINTS PR00090 Ring hydroxylating dioxygenase alpha-subunit signature 28 53 2.6E-23 T 22-04-2016 IPR001663 Aromatic-ring-hydroxylating dioxygenase, alpha subunit GO:0005506|GO:0006725|GO:0051537|GO:0055114 PP4_RS10710 aae11dbcfd6c18544619bde60b37d0d7 373 PANTHER PTHR21266 10 367 4.4E-99 T 22-04-2016 PP4_RS10710 aae11dbcfd6c18544619bde60b37d0d7 373 PANTHER PTHR21266:SF2 10 367 4.4E-99 T 22-04-2016 PP4_RS10710 aae11dbcfd6c18544619bde60b37d0d7 373 Pfam PF00355 Rieske [2Fe-2S] domain 43 131 3.0E-19 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 PP4_RS10710 aae11dbcfd6c18544619bde60b37d0d7 373 SUPERFAMILY SSF50022 13 155 2.75E-45 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 PP4_RS10710 aae11dbcfd6c18544619bde60b37d0d7 373 ProSitePatterns PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 86 109 - T 22-04-2016 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site GO:0005506|GO:0016705|GO:0051537|GO:0055114 PP4_RS10710 aae11dbcfd6c18544619bde60b37d0d7 373 Pfam PF00848 Ring hydroxylating alpha subunit (catalytic domain) 180 364 1.0E-21 T 22-04-2016 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 PP4_RS10710 aae11dbcfd6c18544619bde60b37d0d7 373 SUPERFAMILY SSF55961 159 366 7.77E-34 T 22-04-2016 PP4_RS10710 aae11dbcfd6c18544619bde60b37d0d7 373 Gene3D G3DSA:3.90.380.10 148 342 9.5E-15 T 22-04-2016 IPR015879 Aromatic-ring-hydroxylating dioxygenase, alpha subunit, C-terminal domain GO:0005506|GO:0016708|GO:0019439|GO:0051537|GO:0055114 PP4_RS10710 aae11dbcfd6c18544619bde60b37d0d7 373 Gene3D G3DSA:2.102.10.10 43 147 2.4E-26 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 PP4_RS23110 ac6dca28f21b8c087f688bf255ca0cda 113 Gene3D G3DSA:2.30.30.40 45 113 1.6E-36 T 22-04-2016 PP4_RS23110 ac6dca28f21b8c087f688bf255ca0cda 113 Pfam PF03831 PhnA domain 47 113 1.3E-32 T 22-04-2016 IPR013988 PhnA protein, C-terminal PP4_RS23110 ac6dca28f21b8c087f688bf255ca0cda 113 SUPERFAMILY SSF57783 3 34 1.02E-14 T 22-04-2016 PP4_RS23110 ac6dca28f21b8c087f688bf255ca0cda 113 TIGRFAM TIGR00686 phnA: putative alkylphosphonate utilization operon protein PhnA 4 112 4.7E-50 T 22-04-2016 IPR004624 PhnA protein PP4_RS23110 ac6dca28f21b8c087f688bf255ca0cda 113 PANTHER PTHR30305 2 113 3.2E-80 T 22-04-2016 PP4_RS23110 ac6dca28f21b8c087f688bf255ca0cda 113 Pfam PF08274 PhnA Zinc-Ribbon 3 32 9.8E-17 T 22-04-2016 IPR013987 PhnA protein, N-terminal PP4_RS23110 ac6dca28f21b8c087f688bf255ca0cda 113 Gene3D G3DSA:2.20.25.10 2 40 1.9E-22 T 22-04-2016 PP4_RS23110 ac6dca28f21b8c087f688bf255ca0cda 113 SUPERFAMILY SSF82057 42 113 5.95E-29 T 22-04-2016 PP4_RS06945 648bf1c77a4282184123a0f64b17bb3d 332 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 175 330 8.3E-44 T 22-04-2016 IPR000160 GGDEF domain PP4_RS06945 648bf1c77a4282184123a0f64b17bb3d 332 PANTHER PTHR10799:SF750 20 90 1.2E-28 T 22-04-2016 PP4_RS06945 648bf1c77a4282184123a0f64b17bb3d 332 PANTHER PTHR10799:SF750 209 331 1.2E-28 T 22-04-2016 PP4_RS06945 648bf1c77a4282184123a0f64b17bb3d 332 Gene3D G3DSA:3.30.450.20 13 153 4.8E-31 T 22-04-2016 PP4_RS06945 648bf1c77a4282184123a0f64b17bb3d 332 SMART SM00091 15 83 2.6E-6 T 22-04-2016 IPR000014 PAS domain PP4_RS06945 648bf1c77a4282184123a0f64b17bb3d 332 PANTHER PTHR10799 20 90 1.2E-28 T 22-04-2016 PP4_RS06945 648bf1c77a4282184123a0f64b17bb3d 332 PANTHER PTHR10799 209 331 1.2E-28 T 22-04-2016 PP4_RS06945 648bf1c77a4282184123a0f64b17bb3d 332 SUPERFAMILY SSF55785 20 135 7.33E-24 T 22-04-2016 IPR000014 PAS domain PP4_RS06945 648bf1c77a4282184123a0f64b17bb3d 332 SMART SM00086 90 133 0.0074 T 22-04-2016 IPR001610 PAC motif PP4_RS06945 648bf1c77a4282184123a0f64b17bb3d 332 SUPERFAMILY SSF55073 181 330 1.8E-43 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS06945 648bf1c77a4282184123a0f64b17bb3d 332 Pfam PF08447 PAS fold 38 126 7.9E-23 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 PP4_RS06945 648bf1c77a4282184123a0f64b17bb3d 332 Gene3D G3DSA:3.30.70.270 178 330 1.5E-47 T 22-04-2016 PP4_RS06945 648bf1c77a4282184123a0f64b17bb3d 332 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 13 138 2.3E-11 T 22-04-2016 IPR000014 PAS domain PP4_RS06945 648bf1c77a4282184123a0f64b17bb3d 332 Pfam PF00990 Diguanylate cyclase, GGDEF domain 176 328 2.0E-43 T 22-04-2016 IPR000160 GGDEF domain PP4_RS06945 648bf1c77a4282184123a0f64b17bb3d 332 SMART SM00267 166 331 6.7E-50 T 22-04-2016 IPR000160 GGDEF domain PP4_RS03030 2b5c058c36d8c5bd2a373de42560d6a5 531 SMART SM00327 94 264 7.1E-6 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS03030 2b5c058c36d8c5bd2a373de42560d6a5 531 Pfam PF13414 TPR repeat 417 455 6.6E-7 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS03030 2b5c058c36d8c5bd2a373de42560d6a5 531 PANTHER PTHR22550:SF8 1 206 2.5E-14 T 22-04-2016 PP4_RS03030 2b5c058c36d8c5bd2a373de42560d6a5 531 SUPERFAMILY SSF53300 94 271 5.19E-19 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS03030 2b5c058c36d8c5bd2a373de42560d6a5 531 Gene3D G3DSA:3.40.50.410 96 256 4.0E-8 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS03030 2b5c058c36d8c5bd2a373de42560d6a5 531 SMART SM00028 410 443 2.1E-5 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS03030 2b5c058c36d8c5bd2a373de42560d6a5 531 Pfam PF13519 von Willebrand factor type A domain 97 203 6.1E-16 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS03030 2b5c058c36d8c5bd2a373de42560d6a5 531 PANTHER PTHR22550 1 206 2.5E-14 T 22-04-2016 PP4_RS03030 2b5c058c36d8c5bd2a373de42560d6a5 531 SUPERFAMILY SSF48452 364 465 1.98E-11 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS03030 2b5c058c36d8c5bd2a373de42560d6a5 531 Gene3D G3DSA:1.25.40.10 385 461 6.5E-11 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS21400 37da2b7cdbeab7080c663dc326ebecd9 83 SUPERFAMILY SSF54565 1 78 1.24E-27 T 22-04-2016 IPR023803 Ribosomal protein S16 domain PP4_RS21400 37da2b7cdbeab7080c663dc326ebecd9 83 Pfam PF00886 Ribosomal protein S16 8 68 3.5E-23 T 22-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS21400 37da2b7cdbeab7080c663dc326ebecd9 83 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 1 78 23.329 T 22-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS21400 37da2b7cdbeab7080c663dc326ebecd9 83 Gene3D G3DSA:3.30.1320.10 1 78 3.4E-31 T 22-04-2016 IPR023803 Ribosomal protein S16 domain PP4_RS21400 37da2b7cdbeab7080c663dc326ebecd9 83 PANTHER PTHR12919 1 78 9.0E-39 T 22-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS21400 37da2b7cdbeab7080c663dc326ebecd9 83 TIGRFAM TIGR00002 S16: ribosomal protein bS16 2 78 1.2E-28 T 22-04-2016 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS22620 215930c34287dd3b948b1dbd9602a0e8 258 PIRSF PIRSF005902 1 258 6.9E-68 T 22-04-2016 IPR001130 TatD family GO:0016788 PP4_RS22620 215930c34287dd3b948b1dbd9602a0e8 258 SUPERFAMILY SSF51556 3 257 1.23E-76 T 22-04-2016 IPR032466 Metal-dependent hydrolase PP4_RS22620 215930c34287dd3b948b1dbd9602a0e8 258 Pfam PF01026 TatD related DNase 4 256 1.1E-63 T 22-04-2016 IPR001130 TatD family GO:0016788 PP4_RS22620 215930c34287dd3b948b1dbd9602a0e8 258 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 3 257 2.4E-62 T 22-04-2016 IPR015991 Uncharacterised deoxyribonuclease TatD-type GO:0004536 PP4_RS22620 215930c34287dd3b948b1dbd9602a0e8 258 PANTHER PTHR10060 1 258 1.1E-81 T 22-04-2016 IPR001130 TatD family GO:0016788 PP4_RS22620 215930c34287dd3b948b1dbd9602a0e8 258 Gene3D G3DSA:3.20.20.140 1 257 1.4E-78 T 22-04-2016 PP4_RS22620 215930c34287dd3b948b1dbd9602a0e8 258 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 3 11 - T 22-04-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 PP4_RS18240 9ef60441e557d85fcd7cd1bac5063101 374 PANTHER PTHR30173:SF30 7 360 2.9E-37 T 22-04-2016 PP4_RS18240 9ef60441e557d85fcd7cd1bac5063101 374 Pfam PF08281 Sigma-70, region 4 111 163 7.0E-15 T 22-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS18240 9ef60441e557d85fcd7cd1bac5063101 374 SUPERFAMILY SSF88946 12 88 7.46E-12 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS18240 9ef60441e557d85fcd7cd1bac5063101 374 Gene3D G3DSA:1.10.1740.10 12 79 4.1E-12 T 22-04-2016 PP4_RS18240 9ef60441e557d85fcd7cd1bac5063101 374 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 13 165 9.9E-26 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS18240 9ef60441e557d85fcd7cd1bac5063101 374 PANTHER PTHR30173 7 360 2.9E-37 T 22-04-2016 PP4_RS18240 9ef60441e557d85fcd7cd1bac5063101 374 Gene3D G3DSA:1.10.10.10 104 169 2.5E-16 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS18240 9ef60441e557d85fcd7cd1bac5063101 374 Pfam PF04773 FecR protein 195 278 4.5E-13 T 22-04-2016 IPR006860 FecR protein PP4_RS18240 9ef60441e557d85fcd7cd1bac5063101 374 Pfam PF04542 Sigma-70 region 2 13 79 1.3E-9 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS18240 9ef60441e557d85fcd7cd1bac5063101 374 SUPERFAMILY SSF88659 97 169 1.16E-14 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS18240 9ef60441e557d85fcd7cd1bac5063101 374 Pfam PF16344 Domain of unknown function (DUF4974) 292 364 3.6E-8 T 22-04-2016 IPR032508 Protein FecR, C-terminal PP4_RS09460 ca786b3d92247a462e0e4d3ae7711429 451 PANTHER PTHR22912:SF106 1 450 2.0E-221 T 22-04-2016 PP4_RS09460 ca786b3d92247a462e0e4d3ae7711429 451 SUPERFAMILY SSF51905 5 368 1.18E-60 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS09460 ca786b3d92247a462e0e4d3ae7711429 451 PANTHER PTHR22912 1 450 2.0E-221 T 22-04-2016 PP4_RS09460 ca786b3d92247a462e0e4d3ae7711429 451 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 317 2.5E-72 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS09460 ca786b3d92247a462e0e4d3ae7711429 451 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 338 446 7.3E-38 T 22-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 PP4_RS09460 ca786b3d92247a462e0e4d3ae7711429 451 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 39 49 - T 22-04-2016 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 PP4_RS09460 ca786b3d92247a462e0e4d3ae7711429 451 Gene3D G3DSA:3.50.50.60 134 325 2.7E-56 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS09460 ca786b3d92247a462e0e4d3ae7711429 451 Gene3D G3DSA:3.50.50.60 3 133 8.0E-44 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS09460 ca786b3d92247a462e0e4d3ae7711429 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 168 186 1.2E-29 T 22-04-2016 PP4_RS09460 ca786b3d92247a462e0e4d3ae7711429 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 253 269 1.2E-29 T 22-04-2016 PP4_RS09460 ca786b3d92247a462e0e4d3ae7711429 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 131 149 1.2E-29 T 22-04-2016 PP4_RS09460 ca786b3d92247a462e0e4d3ae7711429 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 7 26 1.2E-29 T 22-04-2016 PP4_RS09460 ca786b3d92247a462e0e4d3ae7711429 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 282 304 1.2E-29 T 22-04-2016 PP4_RS09460 ca786b3d92247a462e0e4d3ae7711429 451 Gene3D G3DSA:3.30.390.30 337 449 2.9E-46 T 22-04-2016 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 PP4_RS09460 ca786b3d92247a462e0e4d3ae7711429 451 SUPERFAMILY SSF55424 335 448 1.72E-37 T 22-04-2016 IPR016156 FAD/NAD-linked reductase, dimerisation domain GO:0016491|GO:0050660|GO:0055114 PP4_RS09460 ca786b3d92247a462e0e4d3ae7711429 451 TIGRFAM TIGR01424 gluta_reduc_2: glutathione-disulfide reductase 3 447 1.4E-189 T 22-04-2016 IPR006324 Glutathione-disulphide reductase GO:0004362|GO:0006749|GO:0050660|GO:0050661|GO:0055114 KEGG: 00480+1.8.1.7|MetaCyc: PWY-4081 PP4_RS09460 ca786b3d92247a462e0e4d3ae7711429 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 334 355 5.8E-71 T 22-04-2016 PP4_RS09460 ca786b3d92247a462e0e4d3ae7711429 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 168 193 5.8E-71 T 22-04-2016 PP4_RS09460 ca786b3d92247a462e0e4d3ae7711429 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 297 304 5.8E-71 T 22-04-2016 PP4_RS09460 ca786b3d92247a462e0e4d3ae7711429 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 6 28 5.8E-71 T 22-04-2016 PP4_RS09460 ca786b3d92247a462e0e4d3ae7711429 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 134 143 5.8E-71 T 22-04-2016 PP4_RS09460 ca786b3d92247a462e0e4d3ae7711429 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 421 441 5.8E-71 T 22-04-2016 PP4_RS09460 ca786b3d92247a462e0e4d3ae7711429 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 399 414 5.8E-71 T 22-04-2016 PP4_RS09460 ca786b3d92247a462e0e4d3ae7711429 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 38 53 5.8E-71 T 22-04-2016 PP4_RS09460 ca786b3d92247a462e0e4d3ae7711429 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 254 268 5.8E-71 T 22-04-2016 PP4_RS09460 ca786b3d92247a462e0e4d3ae7711429 451 PIRSF PIRSF000350 1 446 4.4E-90 T 22-04-2016 PP4_RS09740 8849228b16bf6d085db33a028b20386a 64 Pfam PF01632 Ribosomal protein L35 2 61 1.9E-24 T 22-04-2016 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS09740 8849228b16bf6d085db33a028b20386a 64 PRINTS PR00064 Ribosomal protein L35 signature 20 34 3.1E-19 T 22-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 PP4_RS09740 8849228b16bf6d085db33a028b20386a 64 PRINTS PR00064 Ribosomal protein L35 signature 35 53 3.1E-19 T 22-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 PP4_RS09740 8849228b16bf6d085db33a028b20386a 64 PRINTS PR00064 Ribosomal protein L35 signature 3 20 3.1E-19 T 22-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 PP4_RS09740 8849228b16bf6d085db33a028b20386a 64 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 62 3.0E-25 T 22-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 PP4_RS09740 8849228b16bf6d085db33a028b20386a 64 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 30 - T 22-04-2016 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS09740 8849228b16bf6d085db33a028b20386a 64 PANTHER PTHR33343 1 61 3.6E-23 T 22-04-2016 PP4_RS09740 8849228b16bf6d085db33a028b20386a 64 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 63 16.481 T 22-04-2016 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 PP4_RS09740 8849228b16bf6d085db33a028b20386a 64 SUPERFAMILY SSF143034 2 61 2.35E-20 T 22-04-2016 PP4_RS17945 5989fcf0abc7023099fdf16cfcf6a394 349 SUPERFAMILY SSF56112 22 337 5.1E-46 T 22-04-2016 IPR011009 Protein kinase-like domain PP4_RS17945 5989fcf0abc7023099fdf16cfcf6a394 349 PANTHER PTHR21310 69 339 6.9E-29 T 22-04-2016 PP4_RS17945 5989fcf0abc7023099fdf16cfcf6a394 349 PANTHER PTHR21310:SF14 69 339 6.9E-29 T 22-04-2016 PP4_RS17945 5989fcf0abc7023099fdf16cfcf6a394 349 Pfam PF01636 Phosphotransferase enzyme family 42 286 3.7E-39 T 22-04-2016 IPR002575 Aminoglycoside phosphotransferase PP4_RS17945 5989fcf0abc7023099fdf16cfcf6a394 349 Gene3D G3DSA:3.90.1200.10 138 323 9.8E-33 T 22-04-2016 PP4_RS22400 e71e130cf74fe6c1d2415e1b90b5b3d5 159 Pfam PF00583 Acetyltransferase (GNAT) family 57 134 4.6E-11 T 22-04-2016 IPR000182 GNAT domain GO:0008080 PP4_RS22400 e71e130cf74fe6c1d2415e1b90b5b3d5 159 Gene3D G3DSA:3.40.630.30 1 155 2.9E-32 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS22400 e71e130cf74fe6c1d2415e1b90b5b3d5 159 PANTHER PTHR23091:SF250 6 154 4.4E-36 T 22-04-2016 PP4_RS22400 e71e130cf74fe6c1d2415e1b90b5b3d5 159 PANTHER PTHR23091 6 154 4.4E-36 T 22-04-2016 PP4_RS22400 e71e130cf74fe6c1d2415e1b90b5b3d5 159 SUPERFAMILY SSF55729 1 155 8.92E-32 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS12810 f0026f232a0537dde1898447ff715fb1 294 PANTHER PTHR12277 72 294 3.9E-46 T 22-04-2016 PP4_RS12810 f0026f232a0537dde1898447ff715fb1 294 PRINTS PR00111 Alpha/beta hydrolase fold signature 114 129 1.3E-5 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS12810 f0026f232a0537dde1898447ff715fb1 294 PRINTS PR00111 Alpha/beta hydrolase fold signature 161 174 1.3E-5 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS12810 f0026f232a0537dde1898447ff715fb1 294 Pfam PF12146 Serine aminopeptidase, S33 89 224 4.6E-17 T 22-04-2016 IPR022742 Serine aminopeptidase, S33 PP4_RS12810 f0026f232a0537dde1898447ff715fb1 294 Pfam PF12146 Serine aminopeptidase, S33 230 276 1.1E-6 T 22-04-2016 IPR022742 Serine aminopeptidase, S33 PP4_RS12810 f0026f232a0537dde1898447ff715fb1 294 Gene3D G3DSA:3.40.50.1820 68 286 1.7E-39 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS12810 f0026f232a0537dde1898447ff715fb1 294 SUPERFAMILY SSF53474 71 292 1.87E-41 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS06050 e0ec63876aee1e1a11d76cdb2309d9a4 387 SUPERFAMILY SSF52540 6 288 1.24E-19 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS06050 e0ec63876aee1e1a11d76cdb2309d9a4 387 Gene3D G3DSA:3.40.50.300 6 186 1.8E-11 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS06050 e0ec63876aee1e1a11d76cdb2309d9a4 387 Pfam PF13191 AAA ATPase domain 19 203 8.1E-11 T 22-04-2016 PP4_RS17110 5264284bced7b1355b695c7c4addf8c4 417 Gene3D G3DSA:1.20.1600.10 19 403 3.2E-61 T 22-04-2016 PP4_RS17110 5264284bced7b1355b695c7c4addf8c4 417 SUPERFAMILY SSF56954 5 403 8.76E-82 T 22-04-2016 PP4_RS17110 5264284bced7b1355b695c7c4addf8c4 417 PANTHER PTHR30203:SF1 21 404 1.5E-71 T 22-04-2016 PP4_RS17110 5264284bced7b1355b695c7c4addf8c4 417 Pfam PF02321 Outer membrane efflux protein 239 399 5.8E-22 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PP4_RS17110 5264284bced7b1355b695c7c4addf8c4 417 Pfam PF02321 Outer membrane efflux protein 29 202 1.5E-23 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PP4_RS17110 5264284bced7b1355b695c7c4addf8c4 417 PANTHER PTHR30203 21 404 1.5E-71 T 22-04-2016 PP4_RS22070 f85411e9a9e684bddb260cbaa10a026d 186 Gene3D G3DSA:1.10.10.60 132 185 7.7E-30 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS22070 f85411e9a9e684bddb260cbaa10a026d 186 Pfam PF00072 Response regulator receiver domain 16 124 1.3E-20 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS22070 f85411e9a9e684bddb260cbaa10a026d 186 SUPERFAMILY SSF52172 14 171 1.01E-30 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS22070 f85411e9a9e684bddb260cbaa10a026d 186 Pfam PF02954 Bacterial regulatory protein, Fis family 148 181 7.4E-12 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS22070 f85411e9a9e684bddb260cbaa10a026d 186 SMART SM00448 13 124 1.0E-21 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS22070 f85411e9a9e684bddb260cbaa10a026d 186 PANTHER PTHR26402 13 124 1.3E-63 T 22-04-2016 PP4_RS22070 f85411e9a9e684bddb260cbaa10a026d 186 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 165 185 1.7E-7 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS22070 f85411e9a9e684bddb260cbaa10a026d 186 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 148 165 1.7E-7 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS22070 f85411e9a9e684bddb260cbaa10a026d 186 Gene3D G3DSA:3.40.50.2300 14 125 3.8E-29 T 22-04-2016 PP4_RS22070 f85411e9a9e684bddb260cbaa10a026d 186 PANTHER PTHR26402:SF344 13 124 1.3E-63 T 22-04-2016 PP4_RS19110 92ef3cd1926b4897f46bd897ed789fdb 400 PANTHER PTHR23505 391 397 2.5E-42 T 22-04-2016 PP4_RS19110 92ef3cd1926b4897f46bd897ed789fdb 400 PANTHER PTHR23505 9 371 2.5E-42 T 22-04-2016 PP4_RS19110 92ef3cd1926b4897f46bd897ed789fdb 400 Gene3D G3DSA:1.20.1250.20 10 178 4.1E-20 T 22-04-2016 PP4_RS19110 92ef3cd1926b4897f46bd897ed789fdb 400 PANTHER PTHR23505:SF8 391 397 2.5E-42 T 22-04-2016 PP4_RS19110 92ef3cd1926b4897f46bd897ed789fdb 400 PANTHER PTHR23505:SF8 9 371 2.5E-42 T 22-04-2016 PP4_RS19110 92ef3cd1926b4897f46bd897ed789fdb 400 SUPERFAMILY SSF103473 8 387 1.31E-44 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS19110 92ef3cd1926b4897f46bd897ed789fdb 400 Pfam PF07690 Major Facilitator Superfamily 241 384 1.9E-12 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS19110 92ef3cd1926b4897f46bd897ed789fdb 400 Pfam PF07690 Major Facilitator Superfamily 14 211 4.8E-14 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS19110 92ef3cd1926b4897f46bd897ed789fdb 400 Gene3D G3DSA:1.20.1250.20 210 386 7.9E-17 T 22-04-2016 PP4_RS25680 1df20106e483645ae70b6cc3335f4e03 323 TIGRFAM TIGR01249 pro_imino_pep_1: prolyl aminopeptidase 9 311 4.4E-132 T 22-04-2016 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 PP4_RS25680 1df20106e483645ae70b6cc3335f4e03 323 PANTHER PTHR10992:SF860 210 311 8.2E-125 T 22-04-2016 PP4_RS25680 1df20106e483645ae70b6cc3335f4e03 323 PANTHER PTHR10992:SF860 1 174 8.2E-125 T 22-04-2016 PP4_RS25680 1df20106e483645ae70b6cc3335f4e03 323 Pfam PF00561 alpha/beta hydrolase fold 36 296 1.5E-37 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS25680 1df20106e483645ae70b6cc3335f4e03 323 PIRSF PIRSF006431 1 315 3.8E-139 T 22-04-2016 IPR005944 Proline iminopeptidase GO:0004177|GO:0005737|GO:0006508 KEGG: 00330+3.4.11.5 PP4_RS25680 1df20106e483645ae70b6cc3335f4e03 323 Gene3D G3DSA:3.40.50.1820 11 297 2.2E-76 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS25680 1df20106e483645ae70b6cc3335f4e03 323 PRINTS PR00111 Alpha/beta hydrolase fold signature 106 119 4.5E-6 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS25680 1df20106e483645ae70b6cc3335f4e03 323 PRINTS PR00111 Alpha/beta hydrolase fold signature 120 133 4.5E-6 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS25680 1df20106e483645ae70b6cc3335f4e03 323 PRINTS PR00111 Alpha/beta hydrolase fold signature 60 75 4.5E-6 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS25680 1df20106e483645ae70b6cc3335f4e03 323 SUPERFAMILY SSF53474 2 296 1.21E-65 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS25680 1df20106e483645ae70b6cc3335f4e03 323 PANTHER PTHR10992 210 311 8.2E-125 T 22-04-2016 PP4_RS25680 1df20106e483645ae70b6cc3335f4e03 323 PANTHER PTHR10992 1 174 8.2E-125 T 22-04-2016 PP4_RS25680 1df20106e483645ae70b6cc3335f4e03 323 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 106 120 7.1E-14 T 22-04-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 PP4_RS25680 1df20106e483645ae70b6cc3335f4e03 323 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 37 45 7.1E-14 T 22-04-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 PP4_RS25680 1df20106e483645ae70b6cc3335f4e03 323 PRINTS PR00793 Prolyl aminopeptidase (S33) family signature 63 74 7.1E-14 T 22-04-2016 IPR002410 Peptidase S33 GO:0006508|GO:0008233 KEGG: 00330+3.4.11.5 PP4_RS12905 3dfb8056c3872f07fa094da4dbe5fbf6 375 PANTHER PTHR22893 2 365 4.4E-154 T 22-04-2016 PP4_RS12905 3dfb8056c3872f07fa094da4dbe5fbf6 375 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 2 341 8.1E-88 T 22-04-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 PP4_RS12905 3dfb8056c3872f07fa094da4dbe5fbf6 375 PANTHER PTHR22893:SF14 2 365 4.4E-154 T 22-04-2016 PP4_RS12905 3dfb8056c3872f07fa094da4dbe5fbf6 375 Gene3D G3DSA:3.20.20.70 2 361 5.7E-126 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS12905 3dfb8056c3872f07fa094da4dbe5fbf6 375 SUPERFAMILY SSF51395 2 363 6.72E-113 T 22-04-2016 PP4_RS20920 0a3d377c1666279edf8e935601de001c 284 PANTHER PTHR10061 2 284 1.2E-184 T 22-04-2016 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801 PP4_RS20920 0a3d377c1666279edf8e935601de001c 284 TIGRFAM TIGR02821 fghA_ester_D: S-formylglutathione hydrolase 6 281 1.0E-127 T 22-04-2016 IPR014186 S-formylglutathione hydrolase GO:0018738|GO:0046294 KEGG: 00680+3.1.2.12|MetaCyc: PWY-1801 PP4_RS20920 0a3d377c1666279edf8e935601de001c 284 Pfam PF00756 Putative esterase 23 275 7.7E-66 T 22-04-2016 IPR000801 Putative esterase PP4_RS20920 0a3d377c1666279edf8e935601de001c 284 Gene3D G3DSA:3.40.50.1820 3 281 1.3E-82 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS20920 0a3d377c1666279edf8e935601de001c 284 SUPERFAMILY SSF53474 4 278 2.13E-97 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS12215 148e352f1199a9b0a42e7f9bb0a815b9 504 SUPERFAMILY SSF55021 410 503 7.32E-25 T 22-04-2016 PP4_RS12215 148e352f1199a9b0a42e7f9bb0a815b9 504 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 421 503 4.4E-21 T 22-04-2016 IPR001721 ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19|UniPathway: UPA00047 PP4_RS12215 148e352f1199a9b0a42e7f9bb0a815b9 504 Pfam PF00585 C-terminal regulatory domain of Threonine dehydratase 319 409 7.3E-25 T 22-04-2016 IPR001721 ACT-like domain KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19|UniPathway: UPA00047 PP4_RS12215 148e352f1199a9b0a42e7f9bb0a815b9 504 SUPERFAMILY SSF55021 326 413 1.49E-26 T 22-04-2016 PP4_RS12215 148e352f1199a9b0a42e7f9bb0a815b9 504 SUPERFAMILY SSF53686 6 355 3.14E-105 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PP4_RS12215 148e352f1199a9b0a42e7f9bb0a815b9 504 PANTHER PTHR10314:SF30 8 358 7.2E-199 T 22-04-2016 PP4_RS12215 148e352f1199a9b0a42e7f9bb0a815b9 504 PANTHER PTHR10314 8 358 7.2E-199 T 22-04-2016 PP4_RS12215 148e352f1199a9b0a42e7f9bb0a815b9 504 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 18 306 5.3E-84 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PP4_RS12215 148e352f1199a9b0a42e7f9bb0a815b9 504 Gene3D G3DSA:3.40.50.1100 69 325 1.3E-85 T 22-04-2016 PP4_RS12215 148e352f1199a9b0a42e7f9bb0a815b9 504 Gene3D G3DSA:3.40.1020.10 384 503 6.5E-39 T 22-04-2016 PP4_RS12215 148e352f1199a9b0a42e7f9bb0a815b9 504 TIGRFAM TIGR01124 ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 5 503 4.4E-235 T 22-04-2016 IPR005787 Threonine dehydratase, biosynthetic GO:0004794|GO:0009097 KEGG: 00260+4.3.1.19|KEGG: 00290+4.3.1.19|UniPathway: UPA00047 PP4_RS12215 148e352f1199a9b0a42e7f9bb0a815b9 504 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 42 55 - T 22-04-2016 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 PP4_RS19795 729402b0fe5f91164d87809ae1b3b3f5 156 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 85 146 2.7E-6 T 22-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 PP4_RS19795 729402b0fe5f91164d87809ae1b3b3f5 156 SUPERFAMILY SSF54534 84 146 2.88E-7 T 22-04-2016 PP4_RS19795 729402b0fe5f91164d87809ae1b3b3f5 156 PIRSF PIRSF006092 2 150 3.1E-8 T 22-04-2016 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 PP4_RS19795 729402b0fe5f91164d87809ae1b3b3f5 156 Gene3D G3DSA:3.10.50.30 80 147 6.1E-10 T 22-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 PP4_RS11565 7b0f4e1074c41d4396df52b5a6cff2a7 468 SMART SM00091 111 177 1.1E-11 T 22-04-2016 IPR000014 PAS domain PP4_RS11565 7b0f4e1074c41d4396df52b5a6cff2a7 468 SMART SM00388 241 314 2.4E-4 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS11565 7b0f4e1074c41d4396df52b5a6cff2a7 468 PANTHER PTHR24423:SF497 74 463 4.2E-111 T 22-04-2016 PP4_RS11565 7b0f4e1074c41d4396df52b5a6cff2a7 468 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 110 233 2.3E-18 T 22-04-2016 IPR000014 PAS domain PP4_RS11565 7b0f4e1074c41d4396df52b5a6cff2a7 468 Pfam PF08447 PAS fold 134 219 4.9E-9 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 PP4_RS11565 7b0f4e1074c41d4396df52b5a6cff2a7 468 SUPERFAMILY SSF55785 116 226 2.09E-22 T 22-04-2016 IPR000014 PAS domain PP4_RS11565 7b0f4e1074c41d4396df52b5a6cff2a7 468 SUPERFAMILY SSF55874 313 463 1.17E-32 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS11565 7b0f4e1074c41d4396df52b5a6cff2a7 468 SMART SM00086 183 226 0.0057 T 22-04-2016 IPR001610 PAC motif PP4_RS11565 7b0f4e1074c41d4396df52b5a6cff2a7 468 Gene3D G3DSA:3.30.565.10 290 465 1.6E-32 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS11565 7b0f4e1074c41d4396df52b5a6cff2a7 468 Gene3D G3DSA:3.30.450.20 111 257 1.1E-26 T 22-04-2016 PP4_RS11565 7b0f4e1074c41d4396df52b5a6cff2a7 468 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 357 456 3.6E-16 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS11565 7b0f4e1074c41d4396df52b5a6cff2a7 468 SUPERFAMILY SSF47384 237 311 9.42E-8 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS11565 7b0f4e1074c41d4396df52b5a6cff2a7 468 PANTHER PTHR24423 74 463 4.2E-111 T 22-04-2016 PP4_RS11565 7b0f4e1074c41d4396df52b5a6cff2a7 468 Pfam PF00512 His Kinase A (phospho-acceptor) domain 242 310 2.6E-8 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS11565 7b0f4e1074c41d4396df52b5a6cff2a7 468 SMART SM00387 356 467 2.9E-23 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS11565 7b0f4e1074c41d4396df52b5a6cff2a7 468 PRINTS PR00344 Bacterial sensor protein C-terminal signature 416 426 3.8E-11 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS11565 7b0f4e1074c41d4396df52b5a6cff2a7 468 PRINTS PR00344 Bacterial sensor protein C-terminal signature 427 445 3.8E-11 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS11565 7b0f4e1074c41d4396df52b5a6cff2a7 468 PRINTS PR00344 Bacterial sensor protein C-terminal signature 398 412 3.8E-11 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS13795 76d6c562abc33bcefad398b323837d89 219 SUPERFAMILY SSF161098 15 200 3.92E-43 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS13795 76d6c562abc33bcefad398b323837d89 219 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 35 215 8.6E-18 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS13795 76d6c562abc33bcefad398b323837d89 219 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 14 110 3.0E-21 T 22-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PP4_RS13795 76d6c562abc33bcefad398b323837d89 219 Gene3D G3DSA:1.10.3720.10 15 215 2.0E-43 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS13795 76d6c562abc33bcefad398b323837d89 219 PANTHER PTHR30614 4 219 2.6E-69 T 22-04-2016 PP4_RS22150 0fa7a75b57e2f53f8bdcd95125b7289f 527 Hamap MF_00072 Peptide chain release factor 3 [prfC]. 2 524 51.255 T 22-04-2016 IPR004548 Peptide chain release factor 3 GO:0005525|GO:0005737|GO:0006415|GO:0016149 PP4_RS22150 0fa7a75b57e2f53f8bdcd95125b7289f 527 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 146 1.2E-16 T 22-04-2016 IPR005225 Small GTP-binding protein domain GO:0005525 PP4_RS22150 0fa7a75b57e2f53f8bdcd95125b7289f 527 TIGRFAM TIGR00503 prfC: peptide chain release factor 3 3 526 7.3E-259 T 22-04-2016 IPR004548 Peptide chain release factor 3 GO:0005525|GO:0005737|GO:0006415|GO:0016149 PP4_RS22150 0fa7a75b57e2f53f8bdcd95125b7289f 527 SUPERFAMILY SSF50447 259 390 2.26E-30 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain PP4_RS22150 0fa7a75b57e2f53f8bdcd95125b7289f 527 Gene3D G3DSA:3.30.70.870 392 461 6.5E-16 T 22-04-2016 PP4_RS22150 0fa7a75b57e2f53f8bdcd95125b7289f 527 SUPERFAMILY SSF52540 8 274 2.47E-86 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS22150 0fa7a75b57e2f53f8bdcd95125b7289f 527 Pfam PF00009 Elongation factor Tu GTP binding domain 11 274 1.4E-46 T 22-04-2016 PP4_RS22150 0fa7a75b57e2f53f8bdcd95125b7289f 527 SUPERFAMILY SSF54980 390 465 1.62E-18 T 22-04-2016 IPR009022 Elongation factor G, III-V domain PP4_RS22150 0fa7a75b57e2f53f8bdcd95125b7289f 527 Pfam PF16658 Class II release factor RF3, C-terminal domain 384 511 3.0E-46 T 22-04-2016 IPR032090 Peptide chain release factor 3, C-terminal PP4_RS22150 0fa7a75b57e2f53f8bdcd95125b7289f 527 Gene3D G3DSA:3.40.50.300 8 278 8.0E-64 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS22150 0fa7a75b57e2f53f8bdcd95125b7289f 527 PRINTS PR00315 GTP-binding elongation factor signature 13 26 7.6E-12 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS22150 0fa7a75b57e2f53f8bdcd95125b7289f 527 PRINTS PR00315 GTP-binding elongation factor signature 99 110 7.6E-12 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS22150 0fa7a75b57e2f53f8bdcd95125b7289f 527 PRINTS PR00315 GTP-binding elongation factor signature 135 144 7.6E-12 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS22150 0fa7a75b57e2f53f8bdcd95125b7289f 527 PRINTS PR00315 GTP-binding elongation factor signature 83 93 7.6E-12 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS22150 0fa7a75b57e2f53f8bdcd95125b7289f 527 PRINTS PR00315 GTP-binding elongation factor signature 63 71 7.6E-12 T 22-04-2016 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 PP4_RS22150 0fa7a75b57e2f53f8bdcd95125b7289f 527 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 56 71 - T 22-04-2016 IPR031157 Tr-type G domain, conserved site PP4_RS22150 0fa7a75b57e2f53f8bdcd95125b7289f 527 PANTHER PTHR23115:SF69 248 465 1.6E-239 T 22-04-2016 PP4_RS22150 0fa7a75b57e2f53f8bdcd95125b7289f 527 PANTHER PTHR23115:SF69 1 182 1.6E-239 T 22-04-2016 PP4_RS22150 0fa7a75b57e2f53f8bdcd95125b7289f 527 Pfam PF03144 Elongation factor Tu domain 2 311 377 1.7E-11 T 22-04-2016 IPR004161 Translation elongation factor EFTu/EF1A, domain 2 GO:0005525 PP4_RS22150 0fa7a75b57e2f53f8bdcd95125b7289f 527 Gene3D G3DSA:2.40.30.10 289 391 8.7E-26 T 22-04-2016 PP4_RS22150 0fa7a75b57e2f53f8bdcd95125b7289f 527 PANTHER PTHR23115 248 465 1.6E-239 T 22-04-2016 PP4_RS22150 0fa7a75b57e2f53f8bdcd95125b7289f 527 PANTHER PTHR23115 1 182 1.6E-239 T 22-04-2016 PP4_RS11870 dec25fd041b7549c90551d7fafef4c81 183 ProSitePatterns PS00398 Site-specific recombinases signature 2. 59 71 - T 22-04-2016 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 PP4_RS11870 dec25fd041b7549c90551d7fafef4c81 183 ProSitePatterns PS00397 Site-specific recombinases active site. 6 14 - T 22-04-2016 IPR006118 Recombinase, conserved site GO:0000150|GO:0006310 PP4_RS11870 dec25fd041b7549c90551d7fafef4c81 183 PANTHER PTHR30461:SF9 1 179 4.9E-41 T 22-04-2016 PP4_RS11870 dec25fd041b7549c90551d7fafef4c81 183 PANTHER PTHR30461 1 179 4.9E-41 T 22-04-2016 PP4_RS11870 dec25fd041b7549c90551d7fafef4c81 183 SMART SM00857 3 140 2.3E-49 T 22-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 PP4_RS11870 dec25fd041b7549c90551d7fafef4c81 183 SUPERFAMILY SSF53041 1 139 1.28E-38 T 22-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 PP4_RS11870 dec25fd041b7549c90551d7fafef4c81 183 Pfam PF00239 Resolvase, N terminal domain 3 139 5.8E-39 T 22-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 PP4_RS11870 dec25fd041b7549c90551d7fafef4c81 183 Gene3D G3DSA:3.40.50.1390 1 123 1.5E-36 T 22-04-2016 IPR006119 Resolvase, N-terminal catalytic domain GO:0000150|GO:0003677|GO:0006310 PP4_RS20615 2878a1c39cdc6758b3ebd8307e1a6404 240 PANTHER PTHR34148:SF1 4 239 4.9E-47 T 22-04-2016 PP4_RS20615 2878a1c39cdc6758b3ebd8307e1a6404 240 TIGRFAM TIGR00317 cobS: cobalamin 5'-phosphate synthase 4 236 1.4E-32 T 22-04-2016 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148 PP4_RS20615 2878a1c39cdc6758b3ebd8307e1a6404 240 Hamap MF_00719 Adenosylcobinamide-GDP ribazoletransferase [cobS]. 1 240 48.813 T 22-04-2016 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148 PP4_RS20615 2878a1c39cdc6758b3ebd8307e1a6404 240 PANTHER PTHR34148 4 239 4.9E-47 T 22-04-2016 PP4_RS20615 2878a1c39cdc6758b3ebd8307e1a6404 240 Pfam PF02654 Cobalamin-5-phosphate synthase 7 233 1.1E-51 T 22-04-2016 IPR003805 Adenosylcobinamide-GDP ribazoletransferase GO:0008818|GO:0009236|GO:0051073 KEGG: 00860+2.7.8.26|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6269|UniPathway: UPA00148 PP4_RS15845 c9b450d923c7f46369e5213945e69f1f 259 PANTHER PTHR33490:SF5 1 256 8.3E-107 T 22-04-2016 PP4_RS15845 c9b450d923c7f46369e5213945e69f1f 259 Pfam PF01841 Transglutaminase-like superfamily 114 212 8.9E-23 T 22-04-2016 IPR002931 Transglutaminase-like PP4_RS15845 c9b450d923c7f46369e5213945e69f1f 259 Gene3D G3DSA:3.90.260.10 140 245 7.6E-12 T 22-04-2016 IPR002931 Transglutaminase-like PP4_RS15845 c9b450d923c7f46369e5213945e69f1f 259 SMART SM00460 153 215 3.6E-19 T 22-04-2016 IPR002931 Transglutaminase-like PP4_RS15845 c9b450d923c7f46369e5213945e69f1f 259 PANTHER PTHR33490 1 256 8.3E-107 T 22-04-2016 PP4_RS15845 c9b450d923c7f46369e5213945e69f1f 259 Pfam PF08379 Bacterial transglutaminase-like N-terminal region 3 79 3.5E-21 T 22-04-2016 IPR013589 Bacterial transglutaminase-like, N-terminal PP4_RS15845 c9b450d923c7f46369e5213945e69f1f 259 SUPERFAMILY SSF54001 51 256 8.24E-44 T 22-04-2016 PP4_RS03250 4b3fccb80e01a24140ed7b8e614b6523 451 Pfam PF00072 Response regulator receiver domain 164 275 7.7E-21 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS03250 4b3fccb80e01a24140ed7b8e614b6523 451 Pfam PF00072 Response regulator receiver domain 45 150 3.3E-7 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS03250 4b3fccb80e01a24140ed7b8e614b6523 451 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 286 447 4.8E-45 T 22-04-2016 IPR000160 GGDEF domain PP4_RS03250 4b3fccb80e01a24140ed7b8e614b6523 451 SMART SM00267 278 449 8.9E-51 T 22-04-2016 IPR000160 GGDEF domain PP4_RS03250 4b3fccb80e01a24140ed7b8e614b6523 451 SUPERFAMILY SSF55073 294 449 1.96E-46 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS03250 4b3fccb80e01a24140ed7b8e614b6523 451 Pfam PF00990 Diguanylate cyclase, GGDEF domain 291 444 1.4E-40 T 22-04-2016 IPR000160 GGDEF domain PP4_RS03250 4b3fccb80e01a24140ed7b8e614b6523 451 SUPERFAMILY SSF52172 157 290 9.11E-30 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS03250 4b3fccb80e01a24140ed7b8e614b6523 451 SMART SM00448 38 150 0.0049 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS03250 4b3fccb80e01a24140ed7b8e614b6523 451 SMART SM00448 162 275 4.6E-25 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS03250 4b3fccb80e01a24140ed7b8e614b6523 451 Gene3D G3DSA:3.40.50.2300 48 154 1.1E-8 T 22-04-2016 PP4_RS03250 4b3fccb80e01a24140ed7b8e614b6523 451 Gene3D G3DSA:3.40.50.2300 159 288 8.0E-27 T 22-04-2016 PP4_RS03250 4b3fccb80e01a24140ed7b8e614b6523 451 PANTHER PTHR10799:SF710 178 444 3.1E-28 T 22-04-2016 PP4_RS03250 4b3fccb80e01a24140ed7b8e614b6523 451 Gene3D G3DSA:3.30.70.270 291 448 5.1E-49 T 22-04-2016 PP4_RS03250 4b3fccb80e01a24140ed7b8e614b6523 451 PANTHER PTHR10799 178 444 3.1E-28 T 22-04-2016 PP4_RS03250 4b3fccb80e01a24140ed7b8e614b6523 451 SUPERFAMILY SSF52172 46 154 8.4E-10 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS17750 27dd118f6f2c507d4f8cd20239158447 562 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 124 288 7.2E-45 T 22-04-2016 IPR000160 GGDEF domain PP4_RS17750 27dd118f6f2c507d4f8cd20239158447 562 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 4 120 6.0E-17 T 22-04-2016 IPR000014 PAS domain PP4_RS17750 27dd118f6f2c507d4f8cd20239158447 562 PANTHER PTHR33121:SF13 205 555 3.8E-76 T 22-04-2016 PP4_RS17750 27dd118f6f2c507d4f8cd20239158447 562 PANTHER PTHR33121 205 555 3.8E-76 T 22-04-2016 PP4_RS17750 27dd118f6f2c507d4f8cd20239158447 562 SMART SM00091 3 68 0.0026 T 22-04-2016 IPR000014 PAS domain PP4_RS17750 27dd118f6f2c507d4f8cd20239158447 562 Gene3D G3DSA:3.30.450.20 13 116 1.5E-25 T 22-04-2016 PP4_RS17750 27dd118f6f2c507d4f8cd20239158447 562 SMART SM00267 117 289 2.2E-59 T 22-04-2016 IPR000160 GGDEF domain PP4_RS17750 27dd118f6f2c507d4f8cd20239158447 562 Gene3D G3DSA:3.20.20.450 304 552 4.3E-91 T 22-04-2016 IPR001633 EAL domain PP4_RS17750 27dd118f6f2c507d4f8cd20239158447 562 Gene3D G3DSA:3.30.70.270 130 296 1.5E-59 T 22-04-2016 PP4_RS17750 27dd118f6f2c507d4f8cd20239158447 562 SUPERFAMILY SSF141868 306 553 1.44E-85 T 22-04-2016 IPR001633 EAL domain PP4_RS17750 27dd118f6f2c507d4f8cd20239158447 562 Pfam PF13426 PAS domain 14 116 1.5E-13 T 22-04-2016 IPR000014 PAS domain PP4_RS17750 27dd118f6f2c507d4f8cd20239158447 562 Pfam PF00990 Diguanylate cyclase, GGDEF domain 130 285 6.8E-50 T 22-04-2016 IPR000160 GGDEF domain PP4_RS17750 27dd118f6f2c507d4f8cd20239158447 562 SUPERFAMILY SSF55785 14 119 2.79E-26 T 22-04-2016 IPR000014 PAS domain PP4_RS17750 27dd118f6f2c507d4f8cd20239158447 562 Pfam PF00563 EAL domain 305 540 6.3E-72 T 22-04-2016 IPR001633 EAL domain PP4_RS17750 27dd118f6f2c507d4f8cd20239158447 562 SUPERFAMILY SSF55073 133 290 1.18E-52 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS17750 27dd118f6f2c507d4f8cd20239158447 562 SMART SM00052 299 545 1.1E-107 T 22-04-2016 IPR001633 EAL domain PP4_RS17750 27dd118f6f2c507d4f8cd20239158447 562 SMART SM00086 74 117 2.5E-5 T 22-04-2016 IPR001610 PAC motif PP4_RS09840 a9fedc11048c32a633565cdbb6fd21a8 992 Gene3D G3DSA:2.40.128.130 680 992 3.6E-70 T 22-04-2016 IPR005546 Autotransporter beta-domain PP4_RS09840 a9fedc11048c32a633565cdbb6fd21a8 992 SUPERFAMILY SSF103515 668 992 9.15E-71 T 22-04-2016 IPR005546 Autotransporter beta-domain PP4_RS09840 a9fedc11048c32a633565cdbb6fd21a8 992 PANTHER PTHR35037:SF3 723 973 6.2E-17 T 22-04-2016 PP4_RS09840 a9fedc11048c32a633565cdbb6fd21a8 992 PANTHER PTHR35037:SF3 661 706 6.2E-17 T 22-04-2016 PP4_RS09840 a9fedc11048c32a633565cdbb6fd21a8 992 PANTHER PTHR35037 723 973 6.2E-17 T 22-04-2016 PP4_RS09840 a9fedc11048c32a633565cdbb6fd21a8 992 PANTHER PTHR35037 661 706 6.2E-17 T 22-04-2016 PP4_RS09840 a9fedc11048c32a633565cdbb6fd21a8 992 Pfam PF03797 Autotransporter beta-domain 718 976 3.9E-63 T 22-04-2016 IPR005546 Autotransporter beta-domain PP4_RS09840 a9fedc11048c32a633565cdbb6fd21a8 992 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 435 992 8.5E-51 T 22-04-2016 IPR006315 Outer membrane autotransporter barrel GO:0019867 PP4_RS09840 a9fedc11048c32a633565cdbb6fd21a8 992 SUPERFAMILY SSF51126 111 511 5.02E-5 T 22-04-2016 IPR011050 Pectin lyase fold/virulence factor PP4_RS09840 a9fedc11048c32a633565cdbb6fd21a8 992 TIGRFAM TIGR04393 rpt_T5SS_PEPC: T5SS/PEP-CTERM-associated repeat 56 103 9.7E-7 T 22-04-2016 IPR030895 T5SS/PEP-CTERM-associated repeat PP4_RS09840 a9fedc11048c32a633565cdbb6fd21a8 992 SMART SM00869 720 982 4.6E-59 T 22-04-2016 IPR005546 Autotransporter beta-domain PP4_RS10345 76897055fe8efe61a1e0fb219a8eeec7 145 PANTHER PTHR34846 10 136 9.4E-13 T 22-04-2016 PP4_RS10345 76897055fe8efe61a1e0fb219a8eeec7 145 PANTHER PTHR34846:SF2 10 136 9.4E-13 T 22-04-2016 PP4_RS10345 76897055fe8efe61a1e0fb219a8eeec7 145 SUPERFAMILY SSF69118 3 144 5.43E-46 T 22-04-2016 IPR029032 AhpD-like PP4_RS10345 76897055fe8efe61a1e0fb219a8eeec7 145 TIGRFAM TIGR00778 ahpD_dom: alkylhydroperoxidase AhpD family core domain 29 76 3.1E-15 T 22-04-2016 IPR004675 Alkylhydroperoxidase AhpD core GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 PP4_RS10345 76897055fe8efe61a1e0fb219a8eeec7 145 Pfam PF02627 Carboxymuconolactone decarboxylase family 12 93 3.3E-21 T 22-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 PP4_RS10345 76897055fe8efe61a1e0fb219a8eeec7 145 Gene3D G3DSA:1.20.1290.10 1 144 3.1E-54 T 22-04-2016 IPR029032 AhpD-like PP4_RS08090 8449832fbe2a28226bde71f7a4dfe2d8 704 PANTHER PTHR32552 516 671 1.7E-142 T 22-04-2016 PP4_RS08090 8449832fbe2a28226bde71f7a4dfe2d8 704 Pfam PF07715 TonB-dependent Receptor Plug Domain 48 156 4.1E-21 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS08090 8449832fbe2a28226bde71f7a4dfe2d8 704 SUPERFAMILY SSF56935 358 489 1.68E-82 T 22-04-2016 PP4_RS08090 8449832fbe2a28226bde71f7a4dfe2d8 704 SUPERFAMILY SSF56935 518 671 1.68E-82 T 22-04-2016 PP4_RS08090 8449832fbe2a28226bde71f7a4dfe2d8 704 SUPERFAMILY SSF56935 37 326 1.68E-82 T 22-04-2016 PP4_RS08090 8449832fbe2a28226bde71f7a4dfe2d8 704 PANTHER PTHR32552 9 494 1.7E-142 T 22-04-2016 PP4_RS08090 8449832fbe2a28226bde71f7a4dfe2d8 704 Pfam PF00593 TonB dependent receptor 460 650 6.2E-14 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS08090 8449832fbe2a28226bde71f7a4dfe2d8 704 PANTHER PTHR32552:SF31 516 671 1.7E-142 T 22-04-2016 PP4_RS08090 8449832fbe2a28226bde71f7a4dfe2d8 704 PANTHER PTHR32552:SF31 9 494 1.7E-142 T 22-04-2016 PP4_RS08090 8449832fbe2a28226bde71f7a4dfe2d8 704 Gene3D G3DSA:2.40.170.20 378 668 3.1E-53 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS08090 8449832fbe2a28226bde71f7a4dfe2d8 704 Gene3D G3DSA:2.40.170.20 161 309 3.1E-53 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS08090 8449832fbe2a28226bde71f7a4dfe2d8 704 Gene3D G3DSA:2.40.170.20 343 345 3.1E-53 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS08090 8449832fbe2a28226bde71f7a4dfe2d8 704 Gene3D G3DSA:2.170.130.10 37 160 7.0E-28 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS16825 afab12e20715e08adb4aa4d707bb697e 463 SUPERFAMILY SSF51905 27 252 2.22E-40 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS16825 afab12e20715e08adb4aa4d707bb697e 463 SUPERFAMILY SSF51905 353 404 2.22E-40 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS16825 afab12e20715e08adb4aa4d707bb697e 463 TIGRFAM TIGR03329 Phn_aa_oxid: putative aminophosphonate oxidoreductase 3 462 1.6E-246 T 22-04-2016 IPR017715 Putative aminophosphonate oxidoreductase PP4_RS16825 afab12e20715e08adb4aa4d707bb697e 463 Pfam PF01266 FAD dependent oxidoreductase 28 390 2.0E-48 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PP4_RS16825 afab12e20715e08adb4aa4d707bb697e 463 Gene3D G3DSA:3.50.50.60 16 118 1.2E-45 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS16825 afab12e20715e08adb4aa4d707bb697e 463 Gene3D G3DSA:3.50.50.60 172 251 1.2E-45 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS16825 afab12e20715e08adb4aa4d707bb697e 463 Gene3D G3DSA:3.50.50.60 353 400 1.2E-45 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS16825 afab12e20715e08adb4aa4d707bb697e 463 PANTHER PTHR13847 1 452 5.3E-230 T 22-04-2016 PP4_RS16825 afab12e20715e08adb4aa4d707bb697e 463 PANTHER PTHR13847:SF208 1 452 5.3E-230 T 22-04-2016 PP4_RS18785 8b47faf7580d4eefbec332a876b0ee28 80 Hamap MF_00413 Sulfurtransferase TusA [tusA]. 1 79 25.149 T 22-04-2016 IPR022931 Sulphurtransferase TusA GO:0016783 PP4_RS18785 8b47faf7580d4eefbec332a876b0ee28 80 Pfam PF01206 Sulfurtransferase TusA 9 77 1.9E-23 T 22-04-2016 IPR001455 TusA-like domain PP4_RS18785 8b47faf7580d4eefbec332a876b0ee28 80 Gene3D G3DSA:3.30.110.40 3 78 5.0E-30 T 22-04-2016 IPR001455 TusA-like domain PP4_RS18785 8b47faf7580d4eefbec332a876b0ee28 80 PANTHER PTHR33279 1 77 2.9E-38 T 22-04-2016 PP4_RS18785 8b47faf7580d4eefbec332a876b0ee28 80 SUPERFAMILY SSF64307 2 77 6.28E-26 T 22-04-2016 IPR001455 TusA-like domain PP4_RS18785 8b47faf7580d4eefbec332a876b0ee28 80 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 10 34 - T 22-04-2016 IPR001455 TusA-like domain PP4_RS18785 8b47faf7580d4eefbec332a876b0ee28 80 PANTHER PTHR33279:SF5 1 77 2.9E-38 T 22-04-2016 PP4_RS17340 3cc7968d7dabba4ca04a4e400ef10e0c 320 SUPERFAMILY SSF53850 26 245 2.83E-42 T 22-04-2016 PP4_RS17340 3cc7968d7dabba4ca04a4e400ef10e0c 320 PANTHER PTHR30024 3 310 7.5E-140 T 22-04-2016 PP4_RS17340 3cc7968d7dabba4ca04a4e400ef10e0c 320 SMART SM00062 27 275 1.0E-4 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS17340 3cc7968d7dabba4ca04a4e400ef10e0c 320 Gene3D G3DSA:3.40.190.10 104 204 3.5E-24 T 22-04-2016 PP4_RS17340 3cc7968d7dabba4ca04a4e400ef10e0c 320 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 28 309 1.9E-63 T 22-04-2016 IPR010067 Aliphatic sulfonates-binding protein GO:0006790|GO:0006810|GO:0016020 PP4_RS17340 3cc7968d7dabba4ca04a4e400ef10e0c 320 Pfam PF09084 NMT1/THI5 like 66 183 2.7E-12 T 22-04-2016 IPR015168 SsuA/THI5-like PP4_RS17340 3cc7968d7dabba4ca04a4e400ef10e0c 320 PANTHER PTHR30024:SF3 3 310 7.5E-140 T 22-04-2016 PP4_RS10675 2680c4a2736d95a531214de0adce43e3 470 PANTHER PTHR11699 1 468 4.4E-204 T 22-04-2016 PP4_RS10675 2680c4a2736d95a531214de0adce43e3 470 SUPERFAMILY SSF53720 4 468 7.46E-148 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS10675 2680c4a2736d95a531214de0adce43e3 470 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 244 251 - T 22-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 PP4_RS10675 2680c4a2736d95a531214de0adce43e3 470 Gene3D G3DSA:3.40.605.10 5 257 2.0E-81 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS10675 2680c4a2736d95a531214de0adce43e3 470 Gene3D G3DSA:3.40.309.10 258 443 1.9E-60 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PP4_RS10675 2680c4a2736d95a531214de0adce43e3 470 PANTHER PTHR11699:SF212 1 468 4.4E-204 T 22-04-2016 PP4_RS10675 2680c4a2736d95a531214de0adce43e3 470 Pfam PF00171 Aldehyde dehydrogenase family 19 468 4.4E-154 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PP4_RS04600 68fb4fdbca27bc330d7c6ace297d90da 192 SUPERFAMILY SSF52317 4 188 2.29E-53 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS04600 68fb4fdbca27bc330d7c6ace297d90da 192 PANTHER PTHR11019 4 94 4.9E-55 T 22-04-2016 PP4_RS04600 68fb4fdbca27bc330d7c6ace297d90da 192 PANTHER PTHR11019 112 145 4.9E-55 T 22-04-2016 PP4_RS04600 68fb4fdbca27bc330d7c6ace297d90da 192 Pfam PF01965 DJ-1/PfpI family 4 185 2.3E-50 T 22-04-2016 IPR002818 DJ-1/PfpI PP4_RS04600 68fb4fdbca27bc330d7c6ace297d90da 192 PANTHER PTHR11019:SF112 4 94 4.9E-55 T 22-04-2016 PP4_RS04600 68fb4fdbca27bc330d7c6ace297d90da 192 PANTHER PTHR11019:SF112 112 145 4.9E-55 T 22-04-2016 PP4_RS04600 68fb4fdbca27bc330d7c6ace297d90da 192 Gene3D G3DSA:3.40.50.880 3 187 2.1E-59 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS04600 68fb4fdbca27bc330d7c6ace297d90da 192 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 5 187 1.3E-54 T 22-04-2016 IPR006286 Peptidase C56, PfpI GO:0016798 PP4_RS18940 1645723ba9c8ebd25231de33d5315293 342 SUPERFAMILY SSF53474 63 324 2.07E-30 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS18940 1645723ba9c8ebd25231de33d5315293 342 PANTHER PTHR11005 69 180 6.0E-14 T 22-04-2016 PP4_RS18940 1645723ba9c8ebd25231de33d5315293 342 Pfam PF12697 Alpha/beta hydrolase family 70 284 5.1E-11 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS18940 1645723ba9c8ebd25231de33d5315293 342 PANTHER PTHR11005:SF6 69 180 6.0E-14 T 22-04-2016 PP4_RS18940 1645723ba9c8ebd25231de33d5315293 342 Gene3D G3DSA:3.40.50.1820 34 323 3.7E-35 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS03770 7060e465da23064f90b904d2d2e5cb9c 301 PRINTS PR00412 Epoxide hydrolase signature 264 286 2.1E-5 T 22-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 PP4_RS03770 7060e465da23064f90b904d2d2e5cb9c 301 PRINTS PR00412 Epoxide hydrolase signature 105 118 2.1E-5 T 22-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 PP4_RS03770 7060e465da23064f90b904d2d2e5cb9c 301 PRINTS PR00412 Epoxide hydrolase signature 40 58 2.1E-5 T 22-04-2016 IPR000639 Epoxide hydrolase-like GO:0003824 PP4_RS03770 7060e465da23064f90b904d2d2e5cb9c 301 Pfam PF00561 alpha/beta hydrolase fold 35 149 4.5E-18 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS03770 7060e465da23064f90b904d2d2e5cb9c 301 Gene3D G3DSA:3.40.50.1820 14 286 6.0E-58 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS03770 7060e465da23064f90b904d2d2e5cb9c 301 PANTHER PTHR10992:SF800 5 289 6.4E-85 T 22-04-2016 PP4_RS03770 7060e465da23064f90b904d2d2e5cb9c 301 SUPERFAMILY SSF53474 11 286 4.68E-57 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS03770 7060e465da23064f90b904d2d2e5cb9c 301 PANTHER PTHR10992 5 289 6.4E-85 T 22-04-2016 PP4_RS12290 694bed0fa38ffcbc4eb25e277e6acae5 338 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 10 44 3.1E-6 T 22-04-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain PP4_RS12290 694bed0fa38ffcbc4eb25e277e6acae5 338 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 157 337 5.5E-30 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS12290 694bed0fa38ffcbc4eb25e277e6acae5 338 SUPERFAMILY SSF161098 134 321 1.96E-21 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS12290 694bed0fa38ffcbc4eb25e277e6acae5 338 PANTHER PTHR30325 1 337 6.6E-176 T 22-04-2016 PP4_RS12290 694bed0fa38ffcbc4eb25e277e6acae5 338 Gene3D G3DSA:1.10.3720.10 130 336 9.2E-24 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS14190 1e0146b3a3f223d8ad992538d60fb67e 825 Pfam PF07715 TonB-dependent Receptor Plug Domain 48 168 1.2E-19 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS14190 1e0146b3a3f223d8ad992538d60fb67e 825 Gene3D G3DSA:2.170.130.10 47 170 1.7E-28 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS14190 1e0146b3a3f223d8ad992538d60fb67e 825 Pfam PF00593 TonB dependent receptor 508 803 8.3E-21 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS14190 1e0146b3a3f223d8ad992538d60fb67e 825 PANTHER PTHR30069 1 788 1.8E-111 T 22-04-2016 PP4_RS14190 1e0146b3a3f223d8ad992538d60fb67e 825 SUPERFAMILY SSF56935 32 809 1.43E-91 T 22-04-2016 PP4_RS14190 1e0146b3a3f223d8ad992538d60fb67e 825 PANTHER PTHR30069:SF4 1 788 1.8E-111 T 22-04-2016 PP4_RS14190 1e0146b3a3f223d8ad992538d60fb67e 825 Gene3D G3DSA:2.40.170.20 171 825 1.2E-77 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS19315 3d64baea3cfb6ca29bb99e7201d3275f 917 Gene3D G3DSA:1.25.40.10 505 546 3.0E-4 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS19315 3d64baea3cfb6ca29bb99e7201d3275f 917 Gene3D G3DSA:1.25.40.10 871 899 3.0E-4 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS19315 3d64baea3cfb6ca29bb99e7201d3275f 917 Gene3D G3DSA:1.25.40.10 727 728 3.0E-4 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS19315 3d64baea3cfb6ca29bb99e7201d3275f 917 TIGRFAM TIGR03505 FimV_core: FimV N-terminal domain 160 231 1.3E-27 T 22-04-2016 IPR020012 Motility protein FimV, N-terminal PP4_RS19315 3d64baea3cfb6ca29bb99e7201d3275f 917 TIGRFAM TIGR03504 FimV_Cterm: FimV C-terminal domain 873 916 3.7E-20 T 22-04-2016 IPR020011 Motility protein FimV, C-terminal PP4_RS19315 3d64baea3cfb6ca29bb99e7201d3275f 917 Gene3D G3DSA:3.10.350.10 152 207 5.0E-6 T 22-04-2016 IPR018392 LysM domain PP4_RS19315 3d64baea3cfb6ca29bb99e7201d3275f 917 Pfam PF01476 LysM domain 154 207 1.9E-4 T 22-04-2016 IPR018392 LysM domain PP4_RS05860 74e5151d9244b000df229a71fbe966e9 197 PANTHER PTHR11544 131 194 7.7E-30 T 22-04-2016 PP4_RS05860 74e5151d9244b000df229a71fbe966e9 197 ProSitePatterns PS00352 'Cold-shock' domain signature. 143 161 - T 22-04-2016 IPR019844 Cold-shock conserved site PP4_RS05860 74e5151d9244b000df229a71fbe966e9 197 SUPERFAMILY SSF50249 129 193 1.91E-21 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS05860 74e5151d9244b000df229a71fbe966e9 197 PRINTS PR00050 Cold shock protein signature 152 161 8.9E-15 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PP4_RS05860 74e5151d9244b000df229a71fbe966e9 197 PRINTS PR00050 Cold shock protein signature 132 147 8.9E-15 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PP4_RS05860 74e5151d9244b000df229a71fbe966e9 197 PRINTS PR00050 Cold shock protein signature 167 185 8.9E-15 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PP4_RS05860 74e5151d9244b000df229a71fbe966e9 197 SMART SM00357 131 194 6.2E-23 T 22-04-2016 IPR011129 Cold shock protein GO:0003676 PP4_RS05860 74e5151d9244b000df229a71fbe966e9 197 Gene3D G3DSA:2.40.50.140 131 192 1.1E-26 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS05860 74e5151d9244b000df229a71fbe966e9 197 Pfam PF00313 'Cold-shock' DNA-binding domain 131 193 6.3E-25 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PP4_RS01640 f0813649a506b97ee73b48eb91aa1443 281 PANTHER PTHR30177 5 272 2.6E-114 T 22-04-2016 PP4_RS01640 f0813649a506b97ee73b48eb91aa1443 281 PANTHER PTHR30177:SF2 5 272 2.6E-114 T 22-04-2016 PP4_RS01640 f0813649a506b97ee73b48eb91aa1443 281 TIGRFAM TIGR03416 ABC_choXWV_perm: choline ABC transporter, permease protein 4 270 1.4E-131 T 22-04-2016 IPR017784 ABC transporter, choline, permease protein PP4_RS01640 f0813649a506b97ee73b48eb91aa1443 281 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 109 265 3.4E-26 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS01640 f0813649a506b97ee73b48eb91aa1443 281 Gene3D G3DSA:1.10.3720.10 63 266 9.6E-35 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS01640 f0813649a506b97ee73b48eb91aa1443 281 SUPERFAMILY SSF161098 86 270 4.19E-38 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS25100 5745830979cd841224dc0eae7d8f7552 172 Pfam PF13975 gag-polyprotein putative aspartyl protease 66 155 4.9E-25 T 22-04-2016 PP4_RS25100 5745830979cd841224dc0eae7d8f7552 172 PANTHER PTHR41535:SF1 1 170 8.4E-36 T 22-04-2016 PP4_RS25100 5745830979cd841224dc0eae7d8f7552 172 ProSitePatterns PS00141 Eukaryotic and viral aspartyl proteases active site. 77 88 - T 22-04-2016 IPR001969 Aspartic peptidase, active site GO:0004190|GO:0006508 PP4_RS25100 5745830979cd841224dc0eae7d8f7552 172 PANTHER PTHR41535 1 170 8.4E-36 T 22-04-2016 PP4_RS25100 5745830979cd841224dc0eae7d8f7552 172 TIGRFAM TIGR02281 clan_AA_DTGA: clan AA aspartic protease, TIGR02281 family 54 169 7.9E-32 T 22-04-2016 IPR011969 Clan AA aspartic peptidase, C-terminal PP4_RS25100 5745830979cd841224dc0eae7d8f7552 172 SUPERFAMILY SSF50630 59 159 3.41E-20 T 22-04-2016 IPR021109 Aspartic peptidase domain PP4_RS12430 61dc1894bc91599bd0e23995aacc3f72 179 PANTHER PTHR35850:SF1 2 178 2.5E-76 T 22-04-2016 PP4_RS12430 61dc1894bc91599bd0e23995aacc3f72 179 PANTHER PTHR35850 2 178 2.5E-76 T 22-04-2016 PP4_RS12430 61dc1894bc91599bd0e23995aacc3f72 179 PIRSF PIRSF028301 2 177 1.8E-71 T 22-04-2016 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 PP4_RS12430 61dc1894bc91599bd0e23995aacc3f72 179 Pfam PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 12 164 7.7E-62 T 22-04-2016 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 PP4_RS12430 61dc1894bc91599bd0e23995aacc3f72 179 TIGRFAM TIGR03358 VI_chp_5: type VI secretion protein, VC_A0107 family 8 164 2.4E-62 T 22-04-2016 IPR008312 Type VI secretion system, VipA, VC_A0107 or Hcp2 PP4_RS01545 c029ebd59d6dd740fd0bbb4f10f7ab2e 401 PANTHER PTHR13369 99 252 3.7E-85 T 22-04-2016 PP4_RS01545 c029ebd59d6dd740fd0bbb4f10f7ab2e 401 PANTHER PTHR13369 332 399 3.7E-85 T 22-04-2016 PP4_RS01545 c029ebd59d6dd740fd0bbb4f10f7ab2e 401 SUPERFAMILY SSF53335 112 182 3.81E-7 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS01545 c029ebd59d6dd740fd0bbb4f10f7ab2e 401 Gene3D G3DSA:3.40.50.150 115 243 1.3E-4 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS01545 c029ebd59d6dd740fd0bbb4f10f7ab2e 401 Pfam PF13679 Methyltransferase domain 107 232 1.8E-14 T 22-04-2016 IPR025714 Methyltransferase domain PP4_RS01545 c029ebd59d6dd740fd0bbb4f10f7ab2e 401 PANTHER PTHR13369:SF1 99 252 3.7E-85 T 22-04-2016 PP4_RS01545 c029ebd59d6dd740fd0bbb4f10f7ab2e 401 PANTHER PTHR13369:SF1 332 399 3.7E-85 T 22-04-2016 PP4_RS07050 d079f38001c048b09ad6b84e3a97a395 231 PRINTS PR01008 Flagellar L-ring protein signature 191 205 3.1E-26 T 22-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 PP4_RS07050 d079f38001c048b09ad6b84e3a97a395 231 PRINTS PR01008 Flagellar L-ring protein signature 170 186 3.1E-26 T 22-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 PP4_RS07050 d079f38001c048b09ad6b84e3a97a395 231 PRINTS PR01008 Flagellar L-ring protein signature 207 221 3.1E-26 T 22-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 PP4_RS07050 d079f38001c048b09ad6b84e3a97a395 231 PRINTS PR01008 Flagellar L-ring protein signature 66 78 3.1E-26 T 22-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 PP4_RS07050 d079f38001c048b09ad6b84e3a97a395 231 PRINTS PR01008 Flagellar L-ring protein signature 144 159 3.1E-26 T 22-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 PP4_RS07050 d079f38001c048b09ad6b84e3a97a395 231 PANTHER PTHR34933 1 231 3.6E-107 T 22-04-2016 PP4_RS07050 d079f38001c048b09ad6b84e3a97a395 231 Hamap MF_00415 Flagellar L-ring protein [flgH]. 1 228 30.619 T 22-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 PP4_RS07050 d079f38001c048b09ad6b84e3a97a395 231 PANTHER PTHR34933:SF2 1 231 3.6E-107 T 22-04-2016 PP4_RS07050 d079f38001c048b09ad6b84e3a97a395 231 Pfam PF02107 Flagellar L-ring protein 44 230 5.2E-59 T 22-04-2016 IPR000527 Flagellar L-ring protein GO:0003774|GO:0009427|GO:0071973 PP4_RS04655 19a0cbb1272e623849a5bfdafb801df2 283 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 256 281 3.5E-60 T 22-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PP4_RS04655 19a0cbb1272e623849a5bfdafb801df2 283 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 88 110 3.5E-60 T 22-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PP4_RS04655 19a0cbb1272e623849a5bfdafb801df2 283 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 6 32 3.5E-60 T 22-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PP4_RS04655 19a0cbb1272e623849a5bfdafb801df2 283 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 234 256 3.5E-60 T 22-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PP4_RS04655 19a0cbb1272e623849a5bfdafb801df2 283 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 110 137 3.5E-60 T 22-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PP4_RS04655 19a0cbb1272e623849a5bfdafb801df2 283 PRINTS PR01575 Formyltetrahydrofolate deformylase signature 38 50 3.5E-60 T 22-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PP4_RS04655 19a0cbb1272e623849a5bfdafb801df2 283 PANTHER PTHR10520 1 276 1.1E-142 T 22-04-2016 PP4_RS04655 19a0cbb1272e623849a5bfdafb801df2 283 Pfam PF00551 Formyl transferase 87 262 2.3E-39 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PP4_RS04655 19a0cbb1272e623849a5bfdafb801df2 283 Gene3D G3DSA:3.40.50.170 87 282 2.6E-57 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PP4_RS04655 19a0cbb1272e623849a5bfdafb801df2 283 PANTHER PTHR10520:SF7 1 276 1.1E-142 T 22-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PP4_RS04655 19a0cbb1272e623849a5bfdafb801df2 283 Hamap MF_01927 Formyltetrahydrofolate deformylase [purU]. 1 282 49.123 T 22-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PP4_RS04655 19a0cbb1272e623849a5bfdafb801df2 283 Gene3D G3DSA:3.30.70.260 1 82 4.8E-21 T 22-04-2016 PP4_RS04655 19a0cbb1272e623849a5bfdafb801df2 283 SUPERFAMILY SSF53328 87 283 1.31E-61 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PP4_RS04655 19a0cbb1272e623849a5bfdafb801df2 283 SUPERFAMILY SSF55021 3 83 1.75E-14 T 22-04-2016 PP4_RS04655 19a0cbb1272e623849a5bfdafb801df2 283 PIRSF PIRSF036480 1 283 2.6E-118 T 22-04-2016 PP4_RS04655 19a0cbb1272e623849a5bfdafb801df2 283 TIGRFAM TIGR00655 PurU: formyltetrahydrofolate deformylase 5 282 9.9E-108 T 22-04-2016 IPR004810 Formyltetrahydrofolate deformylase GO:0006189|GO:0008864 KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00074 PP4_RS10155 e13b21e150fac6891a53527b222a1c22 239 SMART SM00824 Thioesterase 7 232 0.0061 T 22-04-2016 IPR020802 Polyketide synthase, thioesterase domain GO:0009058|GO:0016788 PP4_RS10155 e13b21e150fac6891a53527b222a1c22 239 Pfam PF00975 Thioesterase domain 6 230 5.4E-46 T 22-04-2016 IPR001031 Thioesterase GO:0009058|GO:0016788 PP4_RS10155 e13b21e150fac6891a53527b222a1c22 239 PANTHER PTHR11487 2 239 1.4E-83 T 22-04-2016 IPR012223 Thioesterase type II, NRPS/PKS/S-FAS GO:0009058 PP4_RS10155 e13b21e150fac6891a53527b222a1c22 239 Gene3D G3DSA:3.40.50.1820 168 234 3.9E-28 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS10155 e13b21e150fac6891a53527b222a1c22 239 Gene3D G3DSA:3.40.50.1820 5 110 3.9E-28 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS10155 e13b21e150fac6891a53527b222a1c22 239 SUPERFAMILY SSF53474 4 232 1.41E-46 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS07540 814571e461a9f5ff1e2879ecd2133bd0 261 Gene3D G3DSA:2.40.230.20 20 261 2.1E-80 T 22-04-2016 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 PP4_RS07540 814571e461a9f5ff1e2879ecd2133bd0 261 Pfam PF03502 Nucleoside-specific channel-forming protein, Tsx 48 252 4.5E-9 T 22-04-2016 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 PP4_RS07540 814571e461a9f5ff1e2879ecd2133bd0 261 SUPERFAMILY SSF111364 26 261 7.32E-70 T 22-04-2016 IPR018013 Nucleoside-specific channel-forming protein, Tsx-like GO:0009279 PP4_RS03205 ae014b72d1b9fd042847f03d204d47f0 340 SMART SM00861 5 189 6.4E-59 T 22-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain PP4_RS03205 ae014b72d1b9fd042847f03d204d47f0 340 SUPERFAMILY SSF52518 3 213 3.39E-64 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS03205 ae014b72d1b9fd042847f03d204d47f0 340 Gene3D G3DSA:3.40.50.970 3 203 3.4E-82 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS03205 ae014b72d1b9fd042847f03d204d47f0 340 Pfam PF02780 Transketolase, C-terminal domain 203 325 5.0E-43 T 22-04-2016 IPR033248 Transketolase, C-terminal domain PP4_RS03205 ae014b72d1b9fd042847f03d204d47f0 340 PANTHER PTHR11624:SF77 3 334 2.6E-175 T 22-04-2016 PP4_RS03205 ae014b72d1b9fd042847f03d204d47f0 340 PANTHER PTHR11624 3 334 2.6E-175 T 22-04-2016 IPR033247 Transketolase family PP4_RS03205 ae014b72d1b9fd042847f03d204d47f0 340 Pfam PF02779 Transketolase, pyrimidine binding domain 4 189 5.7E-57 T 22-04-2016 IPR005475 Transketolase-like, pyrimidine-binding domain PP4_RS03205 ae014b72d1b9fd042847f03d204d47f0 340 Gene3D G3DSA:3.40.50.920 204 333 1.3E-43 T 22-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 PP4_RS03205 ae014b72d1b9fd042847f03d204d47f0 340 SUPERFAMILY SSF52922 198 333 5.37E-41 T 22-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 PP4_RS02705 1ee191cef40a64bc9e6713ffa845a1d5 308 Hamap MF_00611 Protein FdhE [fdhE]. 2 306 35.847 T 22-04-2016 IPR006452 Formate dehydrogenase accessory protein GO:0005737 PP4_RS02705 1ee191cef40a64bc9e6713ffa845a1d5 308 PIRSF PIRSF018296 1 308 9.7E-111 T 22-04-2016 IPR006452 Formate dehydrogenase accessory protein GO:0005737 PP4_RS02705 1ee191cef40a64bc9e6713ffa845a1d5 308 PANTHER PTHR37689:SF1 1 308 7.4E-77 T 22-04-2016 PP4_RS02705 1ee191cef40a64bc9e6713ffa845a1d5 308 Pfam PF04216 Protein involved in formate dehydrogenase formation 16 303 4.0E-90 T 22-04-2016 IPR006452 Formate dehydrogenase accessory protein GO:0005737 PP4_RS02705 1ee191cef40a64bc9e6713ffa845a1d5 308 SUPERFAMILY SSF144020 18 306 3.66E-83 T 22-04-2016 IPR024064 FdhE-like PP4_RS02705 1ee191cef40a64bc9e6713ffa845a1d5 308 PANTHER PTHR37689 1 308 7.4E-77 T 22-04-2016 PP4_RS02705 1ee191cef40a64bc9e6713ffa845a1d5 308 Gene3D G3DSA:3.90.1670.10 19 306 5.2E-85 T 22-04-2016 IPR024064 FdhE-like PP4_RS02705 1ee191cef40a64bc9e6713ffa845a1d5 308 TIGRFAM TIGR01562 FdhE: formate dehydrogenase accessory protein FdhE 3 305 1.4E-104 T 22-04-2016 IPR006452 Formate dehydrogenase accessory protein GO:0005737 PP4_RS08470 755f3b87112533e07e10c04f2b71c9c4 223 SMART SM00342 132 215 4.4E-18 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS08470 755f3b87112533e07e10c04f2b71c9c4 223 Gene3D G3DSA:1.10.10.60 169 213 9.3E-8 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS08470 755f3b87112533e07e10c04f2b71c9c4 223 PANTHER PTHR11019 135 223 1.6E-12 T 22-04-2016 PP4_RS08470 755f3b87112533e07e10c04f2b71c9c4 223 Pfam PF12833 Helix-turn-helix domain 138 213 2.2E-13 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS08470 755f3b87112533e07e10c04f2b71c9c4 223 SUPERFAMILY SSF46689 168 214 6.81E-7 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS16005 22de0c3b9cc95b7abccae9a6d0fae8e9 322 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 26 314 2.8E-93 T 22-04-2016 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 PP4_RS16005 22de0c3b9cc95b7abccae9a6d0fae8e9 322 Gene3D G3DSA:1.10.3720.10 38 313 1.2E-32 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS16005 22de0c3b9cc95b7abccae9a6d0fae8e9 322 PANTHER PTHR30425 26 322 6.4E-98 T 22-04-2016 PP4_RS16005 22de0c3b9cc95b7abccae9a6d0fae8e9 322 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 102 317 2.8E-16 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS16005 22de0c3b9cc95b7abccae9a6d0fae8e9 322 PANTHER PTHR30425:SF1 26 322 6.4E-98 T 22-04-2016 PP4_RS16005 22de0c3b9cc95b7abccae9a6d0fae8e9 322 SUPERFAMILY SSF161098 63 308 3.66E-31 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS15925 e5524f54727e59ebc07bddf303854ad0 219 PANTHER PTHR14136 35 195 4.9E-31 T 22-04-2016 PP4_RS15925 e5524f54727e59ebc07bddf303854ad0 219 Pfam PF00805 Pentapeptide repeats (8 copies) 45 83 4.9E-9 T 22-04-2016 IPR001646 Pentapeptide repeat PP4_RS15925 e5524f54727e59ebc07bddf303854ad0 219 Pfam PF00805 Pentapeptide repeats (8 copies) 145 183 1.7E-11 T 22-04-2016 IPR001646 Pentapeptide repeat PP4_RS15925 e5524f54727e59ebc07bddf303854ad0 219 PANTHER PTHR14136:SF0 35 195 4.9E-31 T 22-04-2016 PP4_RS15925 e5524f54727e59ebc07bddf303854ad0 219 SUPERFAMILY SSF141571 43 211 4.94E-38 T 22-04-2016 PP4_RS15925 e5524f54727e59ebc07bddf303854ad0 219 Gene3D G3DSA:3.80.10.10 55 195 3.6E-5 T 22-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like PP4_RS05690 6c5b039aa9554d39887f037424d16972 268 PANTHER PTHR10366:SF476 8 219 5.6E-51 T 22-04-2016 PP4_RS05690 6c5b039aa9554d39887f037424d16972 268 PANTHER PTHR10366 8 219 5.6E-51 T 22-04-2016 PP4_RS05690 6c5b039aa9554d39887f037424d16972 268 Gene3D G3DSA:3.40.50.720 8 179 3.0E-32 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS05690 6c5b039aa9554d39887f037424d16972 268 SUPERFAMILY SSF51735 8 240 1.8E-42 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS05690 6c5b039aa9554d39887f037424d16972 268 Pfam PF01370 NAD dependent epimerase/dehydratase family 10 168 1.5E-20 T 22-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 PP4_RS16845 69f1175bc33a3cbfe2272691577846de 270 PANTHER PTHR10108:SF890 15 249 1.5E-52 T 22-04-2016 PP4_RS16845 69f1175bc33a3cbfe2272691577846de 270 Gene3D G3DSA:3.40.50.150 14 166 2.1E-32 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS16845 69f1175bc33a3cbfe2272691577846de 270 Gene3D G3DSA:1.10.150.290 195 251 8.0E-28 T 22-04-2016 IPR023149 Trans-aconitate 2-methyltransferase, C-terminal GO:0030798 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702 PP4_RS16845 69f1175bc33a3cbfe2272691577846de 270 SUPERFAMILY SSF53335 17 208 2.43E-30 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS16845 69f1175bc33a3cbfe2272691577846de 270 Pfam PF13649 Methyltransferase domain 48 136 4.0E-13 T 22-04-2016 PP4_RS16845 69f1175bc33a3cbfe2272691577846de 270 PANTHER PTHR10108 15 249 1.5E-52 T 22-04-2016 PP4_RS09320 197912ae3bf72c8783ccf78d725dbc37 329 Gene3D G3DSA:3.20.20.100 1 321 1.8E-110 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain PP4_RS09320 197912ae3bf72c8783ccf78d725dbc37 329 Pfam PF00248 Aldo/keto reductase family 16 308 1.8E-71 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain PP4_RS09320 197912ae3bf72c8783ccf78d725dbc37 329 SUPERFAMILY SSF51430 1 314 3.67E-99 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain PP4_RS09320 197912ae3bf72c8783ccf78d725dbc37 329 PANTHER PTHR11732:SF269 1 319 3.6E-194 T 22-04-2016 PP4_RS09320 197912ae3bf72c8783ccf78d725dbc37 329 PANTHER PTHR11732 1 319 3.6E-194 T 22-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta PP4_RS20970 60e04d235c7b0f0c497186029c648cf2 1174 SUPERFAMILY SSF89550 5 262 1.45E-12 T 22-04-2016 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 PP4_RS20970 60e04d235c7b0f0c497186029c648cf2 1174 Pfam PF01336 OB-fold nucleic acid binding domain 1010 1085 1.3E-9 T 22-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 PP4_RS20970 60e04d235c7b0f0c497186029c648cf2 1174 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 291 737 4.2E-175 T 22-04-2016 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS20970 60e04d235c7b0f0c497186029c648cf2 1174 SMART SM00481 6 73 1.5E-23 T 22-04-2016 IPR003141 Polymerase/histidinol phosphatase, N-terminal GO:0003677|GO:0003887|GO:0006260 PP4_RS20970 60e04d235c7b0f0c497186029c648cf2 1174 Gene3D G3DSA:1.10.150.280 834 884 1.2E-7 T 22-04-2016 PP4_RS20970 60e04d235c7b0f0c497186029c648cf2 1174 Gene3D G3DSA:2.40.50.140 993 1092 2.1E-13 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS20970 60e04d235c7b0f0c497186029c648cf2 1174 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 5 1046 0.0 T 22-04-2016 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS20970 60e04d235c7b0f0c497186029c648cf2 1174 Gene3D G3DSA:3.20.20.140 5 254 1.6E-18 T 22-04-2016 PP4_RS20970 60e04d235c7b0f0c497186029c648cf2 1174 Pfam PF02811 PHP domain 7 171 1.7E-38 T 22-04-2016 IPR004013 PHP domain GO:0003824 PP4_RS20970 60e04d235c7b0f0c497186029c648cf2 1174 PANTHER PTHR32294:SF0 1 895 0.0 T 22-04-2016 PP4_RS20970 60e04d235c7b0f0c497186029c648cf2 1174 PANTHER PTHR32294:SF0 911 1174 0.0 T 22-04-2016 PP4_RS20970 60e04d235c7b0f0c497186029c648cf2 1174 Pfam PF14579 Helix-hairpin-helix motif 812 896 8.4E-26 T 22-04-2016 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS20970 60e04d235c7b0f0c497186029c648cf2 1174 PANTHER PTHR32294 1 895 0.0 T 22-04-2016 PP4_RS20970 60e04d235c7b0f0c497186029c648cf2 1174 PANTHER PTHR32294 911 1174 0.0 T 22-04-2016 PP4_RS26470 d1fd42537b0cee495a0002d42096d507 365 PANTHER PTHR30222 1 365 7.5E-183 T 22-04-2016 PP4_RS26470 d1fd42537b0cee495a0002d42096d507 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 309 335 7.8E-64 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS26470 d1fd42537b0cee495a0002d42096d507 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 90 103 7.8E-64 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS26470 d1fd42537b0cee495a0002d42096d507 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 154 168 7.8E-64 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS26470 d1fd42537b0cee495a0002d42096d507 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 124 140 7.8E-64 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS26470 d1fd42537b0cee495a0002d42096d507 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 74 88 7.8E-64 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS26470 d1fd42537b0cee495a0002d42096d507 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 31 47 7.8E-64 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS26470 d1fd42537b0cee495a0002d42096d507 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 264 283 7.8E-64 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS26470 d1fd42537b0cee495a0002d42096d507 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 177 196 7.8E-64 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS26470 d1fd42537b0cee495a0002d42096d507 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 214 233 7.8E-64 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS26470 d1fd42537b0cee495a0002d42096d507 365 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 47 68 7.8E-64 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS26470 d1fd42537b0cee495a0002d42096d507 365 PANTHER PTHR30222:SF11 1 365 7.5E-183 T 22-04-2016 PP4_RS26470 d1fd42537b0cee495a0002d42096d507 365 Gene3D G3DSA:3.40.190.10 27 147 2.6E-27 T 22-04-2016 PP4_RS26470 d1fd42537b0cee495a0002d42096d507 365 Gene3D G3DSA:3.40.190.10 148 313 1.2E-65 T 22-04-2016 PP4_RS26470 d1fd42537b0cee495a0002d42096d507 365 PIRSF PIRSF019574 1 365 1.2E-137 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS26470 d1fd42537b0cee495a0002d42096d507 365 SUPERFAMILY SSF53850 25 364 6.34E-98 T 22-04-2016 PP4_RS26470 d1fd42537b0cee495a0002d42096d507 365 Pfam PF13416 Bacterial extracellular solute-binding protein 42 328 4.4E-34 T 22-04-2016 PP4_RS19745 d34d9a0928bd330cccb20ebea156017c 448 Pfam PF01474 Class-II DAHP synthetase family 5 440 1.3E-205 T 22-04-2016 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 PP4_RS19745 d34d9a0928bd330cccb20ebea156017c 448 PANTHER PTHR21337 5 448 1.2E-300 T 22-04-2016 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 PP4_RS19745 d34d9a0928bd330cccb20ebea156017c 448 TIGRFAM TIGR01358 DAHP_synth_II: 3-deoxy-7-phosphoheptulonate synthase 5 447 1.3E-218 T 22-04-2016 IPR002480 DAHP synthetase, class II GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 PP4_RS19745 d34d9a0928bd330cccb20ebea156017c 448 SUPERFAMILY SSF51569 3 444 4.32E-204 T 22-04-2016 PP4_RS27045 d8b6cd869647f469068d1d30c65f8f52 243 PRINTS PR01217 Proline rich extensin signature 104 129 8.0E-13 T 22-04-2016 PP4_RS27045 d8b6cd869647f469068d1d30c65f8f52 243 PRINTS PR01217 Proline rich extensin signature 59 75 8.0E-13 T 22-04-2016 PP4_RS27045 d8b6cd869647f469068d1d30c65f8f52 243 PRINTS PR01217 Proline rich extensin signature 37 58 8.0E-13 T 22-04-2016 PP4_RS27045 d8b6cd869647f469068d1d30c65f8f52 243 PRINTS PR01217 Proline rich extensin signature 82 99 8.0E-13 T 22-04-2016 PP4_RS27045 d8b6cd869647f469068d1d30c65f8f52 243 Gene3D G3DSA:3.30.1150.10 128 241 6.8E-16 T 22-04-2016 PP4_RS27045 d8b6cd869647f469068d1d30c65f8f52 243 PANTHER PTHR33446:SF2 36 242 1.3E-16 T 22-04-2016 PP4_RS27045 d8b6cd869647f469068d1d30c65f8f52 243 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 162 240 3.0E-18 T 22-04-2016 IPR006260 TonB, C-terminal GO:0006810 PP4_RS27045 d8b6cd869647f469068d1d30c65f8f52 243 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 161 240 9.0E-16 T 22-04-2016 IPR006260 TonB, C-terminal GO:0006810 PP4_RS27045 d8b6cd869647f469068d1d30c65f8f52 243 SUPERFAMILY SSF74653 154 234 2.49E-16 T 22-04-2016 PP4_RS27045 d8b6cd869647f469068d1d30c65f8f52 243 PANTHER PTHR33446 36 242 1.3E-16 T 22-04-2016 PP4_RS02885 d28ca2deed40f1705bb0ad6195cd54b6 615 Gene3D G3DSA:2.40.170.20 154 612 3.8E-77 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS02885 d28ca2deed40f1705bb0ad6195cd54b6 615 Pfam PF07715 TonB-dependent Receptor Plug Domain 43 147 8.4E-30 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS02885 d28ca2deed40f1705bb0ad6195cd54b6 615 PANTHER PTHR32552 6 613 6.6E-53 T 22-04-2016 PP4_RS02885 d28ca2deed40f1705bb0ad6195cd54b6 615 Gene3D G3DSA:2.170.130.10 19 153 9.7E-36 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS02885 d28ca2deed40f1705bb0ad6195cd54b6 615 SUPERFAMILY SSF56935 30 611 8.06E-109 T 22-04-2016 PP4_RS02885 d28ca2deed40f1705bb0ad6195cd54b6 615 Pfam PF00593 TonB dependent receptor 386 612 1.3E-29 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS04395 586e8a93872fdac6b294921a0279af7b 161 Gene3D G3DSA:3.30.70.860 95 161 4.5E-35 T 22-04-2016 PP4_RS04395 586e8a93872fdac6b294921a0279af7b 161 PANTHER PTHR30476 1 161 4.7E-83 T 22-04-2016 PP4_RS04395 586e8a93872fdac6b294921a0279af7b 161 Pfam PF04461 Protein of unknown function (DUF520) 2 160 5.3E-63 T 22-04-2016 IPR007551 Protein of unknown function DUF520 PP4_RS04395 586e8a93872fdac6b294921a0279af7b 161 PANTHER PTHR30476:SF0 1 161 4.7E-83 T 22-04-2016 PP4_RS04395 586e8a93872fdac6b294921a0279af7b 161 Hamap MF_00632 UPF0234 protein YajQ [yajQ]. 1 161 28.036 T 22-04-2016 IPR007551 Protein of unknown function DUF520 PP4_RS04395 586e8a93872fdac6b294921a0279af7b 161 Gene3D G3DSA:3.30.70.990 9 94 2.1E-27 T 22-04-2016 PP4_RS04395 586e8a93872fdac6b294921a0279af7b 161 SUPERFAMILY SSF89963 2 87 3.14E-27 T 22-04-2016 IPR007551 Protein of unknown function DUF520 PP4_RS04395 586e8a93872fdac6b294921a0279af7b 161 SUPERFAMILY SSF89963 90 161 2.25E-29 T 22-04-2016 IPR007551 Protein of unknown function DUF520 PP4_RS18125 9e5dd198063dc5b094bb44ffe6e56071 255 Pfam PF00106 short chain dehydrogenase 6 204 4.2E-45 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS18125 9e5dd198063dc5b094bb44ffe6e56071 255 Gene3D G3DSA:3.40.50.720 2 252 4.7E-70 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS18125 9e5dd198063dc5b094bb44ffe6e56071 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 7.5E-9 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS18125 9e5dd198063dc5b094bb44ffe6e56071 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 7.5E-9 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS18125 9e5dd198063dc5b094bb44ffe6e56071 255 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 7.5E-9 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS18125 9e5dd198063dc5b094bb44ffe6e56071 255 SUPERFAMILY SSF51735 4 250 4.18E-62 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS18125 9e5dd198063dc5b094bb44ffe6e56071 255 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PP4_RS18125 9e5dd198063dc5b094bb44ffe6e56071 255 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 192 0.0049 T 22-04-2016 PP4_RS18125 9e5dd198063dc5b094bb44ffe6e56071 255 PANTHER PTHR24322 161 192 9.4E-50 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS18125 9e5dd198063dc5b094bb44ffe6e56071 255 PANTHER PTHR24322 10 145 9.4E-50 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS18125 9e5dd198063dc5b094bb44ffe6e56071 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 1.5E-24 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS18125 9e5dd198063dc5b094bb44ffe6e56071 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.5E-24 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS18125 9e5dd198063dc5b094bb44ffe6e56071 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 1.5E-24 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS18125 9e5dd198063dc5b094bb44ffe6e56071 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 216 236 1.5E-24 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS18125 9e5dd198063dc5b094bb44ffe6e56071 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 1.5E-24 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS18125 9e5dd198063dc5b094bb44ffe6e56071 255 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 1.5E-24 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS18125 9e5dd198063dc5b094bb44ffe6e56071 255 PANTHER PTHR24322:SF356 161 192 9.4E-50 T 22-04-2016 PP4_RS18125 9e5dd198063dc5b094bb44ffe6e56071 255 PANTHER PTHR24322:SF356 10 145 9.4E-50 T 22-04-2016 PP4_RS24895 2670bbafc20e22a606a125611e827f63 149 SUPERFAMILY SSF49503 21 149 1.18E-43 T 22-04-2016 IPR008972 Cupredoxin PP4_RS24895 2670bbafc20e22a606a125611e827f63 149 PANTHER PTHR38439 4 149 2.2E-40 T 22-04-2016 PP4_RS24895 2670bbafc20e22a606a125611e827f63 149 TIGRFAM TIGR02695 azurin: azurin 23 147 2.3E-52 T 22-04-2016 IPR014068 Azurin, proteobacteria PP4_RS24895 2670bbafc20e22a606a125611e827f63 149 ProDom PD003655 COPPER ELECTRON AZURIN METAL-BINDING PERIPLASMIC PRECURSOR SIGNAL SEQUENCING DIRECT MEMBRANE 25 144 3.0E-61 T 22-04-2016 PP4_RS24895 2670bbafc20e22a606a125611e827f63 149 Pfam PF00127 Copper binding proteins, plastocyanin/azurin family 21 149 1.1E-24 T 22-04-2016 IPR000923 Blue (type 1) copper domain GO:0005507|GO:0009055 PP4_RS24895 2670bbafc20e22a606a125611e827f63 149 ProSitePatterns PS00196 Type-1 copper (blue) proteins signature. 126 142 - T 22-04-2016 IPR028871 Blue (type 1) copper protein, binding site PP4_RS24895 2670bbafc20e22a606a125611e827f63 149 Gene3D G3DSA:2.60.40.420 22 149 7.2E-52 T 22-04-2016 IPR008972 Cupredoxin PP4_RS24895 2670bbafc20e22a606a125611e827f63 149 PANTHER PTHR38439:SF2 4 149 2.2E-40 T 22-04-2016 PP4_RS21285 a20da1e39a9259f8f49278658265e3b9 227 Gene3D G3DSA:1.10.3680.10 75 221 1.7E-22 T 22-04-2016 IPR029024 TerB-like PP4_RS21285 a20da1e39a9259f8f49278658265e3b9 227 Pfam PF04391 Protein of unknown function (DUF533) 41 221 7.9E-68 T 22-04-2016 IPR007486 Inner membrane protein YebE PP4_RS21285 a20da1e39a9259f8f49278658265e3b9 227 SUPERFAMILY SSF158682 76 221 4.58E-25 T 22-04-2016 IPR029024 TerB-like PP4_RS07630 bd0e77381a15af042dd70f5945805dfc 361 Pfam PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) 45 121 1.8E-9 T 22-04-2016 IPR029464 Type I restriction enzyme R protein, N-terminal domain PP4_RS07630 bd0e77381a15af042dd70f5945805dfc 361 PANTHER PTHR41907 1 360 1.4E-75 T 22-04-2016 PP4_RS07630 bd0e77381a15af042dd70f5945805dfc 361 PIRSF PIRSF035009 1 361 1.7E-145 T 22-04-2016 IPR017035 Uncharacterised conserved protein UCP035009, HsdR, All3000-type PP4_RS07675 74e602423a8aaaf58237e89bd28a1aac 111 PIRSF PIRSF004555 2 111 4.8E-38 T 22-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family PP4_RS07675 74e602423a8aaaf58237e89bd28a1aac 111 PANTHER PTHR33449 1 111 2.6E-48 T 22-04-2016 PP4_RS07675 74e602423a8aaaf58237e89bd28a1aac 111 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 4 100 23.416 T 22-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family PP4_RS07675 74e602423a8aaaf58237e89bd28a1aac 111 Pfam PF02575 YbaB/EbfC DNA-binding family 10 101 4.6E-35 T 22-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family PP4_RS07675 74e602423a8aaaf58237e89bd28a1aac 111 Gene3D G3DSA:3.30.1310.10 1 111 6.9E-48 T 22-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family PP4_RS07675 74e602423a8aaaf58237e89bd28a1aac 111 SUPERFAMILY SSF82607 10 105 6.28E-34 T 22-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family PP4_RS07675 74e602423a8aaaf58237e89bd28a1aac 111 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 3 107 1.2E-32 T 22-04-2016 IPR004401 Nucleoid-associated protein YbaB/EbfC family PP4_RS07675 74e602423a8aaaf58237e89bd28a1aac 111 PANTHER PTHR33449:SF1 1 111 2.6E-48 T 22-04-2016 PP4_RS22405 fd79f0f88438722a49350c9b513f8547 98 PANTHER PTHR40275:SF1 1 97 4.1E-26 T 22-04-2016 PP4_RS22405 fd79f0f88438722a49350c9b513f8547 98 TIGRFAM TIGR02684 dnstrm_HI1420: probable addiction module antidote protein 5 91 3.6E-35 T 22-04-2016 IPR014057 Addiction module antidote protein, HI1420 PP4_RS22405 fd79f0f88438722a49350c9b513f8547 98 PANTHER PTHR40275 1 97 4.1E-26 T 22-04-2016 PP4_RS22405 fd79f0f88438722a49350c9b513f8547 98 Gene3D G3DSA:1.10.260.40 33 89 1.2E-4 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS22405 fd79f0f88438722a49350c9b513f8547 98 SUPERFAMILY SSF47413 31 89 6.98E-8 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS14670 df61180df8eedb26c86fe0f713e01e96 325 ProDom PD135861 METAL-BINDING IRON CSID GAB CYTOPLASMIC 3D-STRUCTURE HOMOLOG DIRECT SEQUENCING 20 312 2.0E-160 T 22-04-2016 IPR015038 Uncharacterised protein family CsiD GO:0005506 PP4_RS14670 df61180df8eedb26c86fe0f713e01e96 325 Gene3D G3DSA:3.60.130.10 18 322 2.7E-116 T 22-04-2016 PP4_RS14670 df61180df8eedb26c86fe0f713e01e96 325 Pfam PF08943 CsiD 21 313 1.7E-142 T 22-04-2016 IPR015038 Uncharacterised protein family CsiD GO:0005506 PP4_RS14670 df61180df8eedb26c86fe0f713e01e96 325 SUPERFAMILY SSF51197 18 322 7.78E-87 T 22-04-2016 PP4_RS14670 df61180df8eedb26c86fe0f713e01e96 325 Hamap MF_01083 Protein CsiD [csiD]. 1 325 77.478 T 22-04-2016 IPR015038 Uncharacterised protein family CsiD GO:0005506 PP4_RS16170 df0029dc415cc1065a8442bb5962fa4d 256 SMART SM00421 172 229 5.6E-6 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS16170 df0029dc415cc1065a8442bb5962fa4d 256 Gene3D G3DSA:1.10.10.10 176 219 1.7E-9 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16170 df0029dc415cc1065a8442bb5962fa4d 256 SMART SM00448 1 134 3.5E-15 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS16170 df0029dc415cc1065a8442bb5962fa4d 256 SUPERFAMILY SSF46894 162 230 3.4E-9 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS16170 df0029dc415cc1065a8442bb5962fa4d 256 Pfam PF00196 Bacterial regulatory proteins, luxR family 176 219 6.3E-8 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS16170 df0029dc415cc1065a8442bb5962fa4d 256 Gene3D G3DSA:3.40.50.2300 1 146 5.7E-22 T 22-04-2016 PP4_RS16170 df0029dc415cc1065a8442bb5962fa4d 256 SUPERFAMILY SSF52172 1 147 2.56E-18 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS16170 df0029dc415cc1065a8442bb5962fa4d 256 PANTHER PTHR26402 1 219 1.5E-29 T 22-04-2016 PP4_RS16170 df0029dc415cc1065a8442bb5962fa4d 256 Pfam PF00072 Response regulator receiver domain 3 134 1.1E-13 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS05990 6ad12f8bf561eafa8da2dbb7c73a4b89 356 PANTHER PTHR21716:SF19 6 350 7.5E-138 T 22-04-2016 PP4_RS05990 6ad12f8bf561eafa8da2dbb7c73a4b89 356 PANTHER PTHR21716 6 350 7.5E-138 T 22-04-2016 IPR002549 Transmembrane protein TqsA-like PP4_RS05990 6ad12f8bf561eafa8da2dbb7c73a4b89 356 Pfam PF01594 Domain of unknown function DUF20 21 345 1.2E-68 T 22-04-2016 IPR002549 Transmembrane protein TqsA-like PP4_RS15390 4de4087f6cec00c11919bb13c90edec5 195 Gene3D G3DSA:1.10.10.10 127 187 2.2E-15 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS15390 4de4087f6cec00c11919bb13c90edec5 195 PANTHER PTHR30173 6 187 5.6E-37 T 22-04-2016 PP4_RS15390 4de4087f6cec00c11919bb13c90edec5 195 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 31 184 2.2E-19 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS15390 4de4087f6cec00c11919bb13c90edec5 195 SUPERFAMILY SSF88659 125 186 1.2E-12 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS15390 4de4087f6cec00c11919bb13c90edec5 195 SUPERFAMILY SSF88946 15 120 1.88E-18 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS15390 4de4087f6cec00c11919bb13c90edec5 195 PANTHER PTHR30173:SF3 6 187 5.6E-37 T 22-04-2016 PP4_RS15390 4de4087f6cec00c11919bb13c90edec5 195 Pfam PF04542 Sigma-70 region 2 42 103 5.4E-10 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS15390 4de4087f6cec00c11919bb13c90edec5 195 Pfam PF08281 Sigma-70, region 4 131 182 1.6E-13 T 22-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS15390 4de4087f6cec00c11919bb13c90edec5 195 Gene3D G3DSA:1.10.1740.10 16 126 1.0E-18 T 22-04-2016 PP4_RS09115 a4bc0119f0d2866740213e12801dd031 386 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 214 380 3.6E-49 T 22-04-2016 IPR000160 GGDEF domain PP4_RS09115 a4bc0119f0d2866740213e12801dd031 386 PANTHER PTHR10799 102 377 1.9E-23 T 22-04-2016 PP4_RS09115 a4bc0119f0d2866740213e12801dd031 386 SUPERFAMILY SSF55073 223 379 3.92E-46 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS09115 a4bc0119f0d2866740213e12801dd031 386 SMART SM00267 207 380 5.0E-58 T 22-04-2016 IPR000160 GGDEF domain PP4_RS09115 a4bc0119f0d2866740213e12801dd031 386 Gene3D G3DSA:3.30.70.270 220 379 5.1E-51 T 22-04-2016 PP4_RS09115 a4bc0119f0d2866740213e12801dd031 386 Pfam PF00990 Diguanylate cyclase, GGDEF domain 218 376 9.6E-44 T 22-04-2016 IPR000160 GGDEF domain PP4_RS09115 a4bc0119f0d2866740213e12801dd031 386 PANTHER PTHR10799:SF750 102 377 1.9E-23 T 22-04-2016 PP4_RS14505 070f6faae2d34918a6da1b241407a9b6 279 SUPERFAMILY SSF52833 39 132 1.61E-15 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS14505 070f6faae2d34918a6da1b241407a9b6 279 PANTHER PTHR11260 18 253 2.8E-126 T 22-04-2016 PP4_RS14505 070f6faae2d34918a6da1b241407a9b6 279 Pfam PF02798 Glutathione S-transferase, N-terminal domain 47 126 2.5E-6 T 22-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 PP4_RS14505 070f6faae2d34918a6da1b241407a9b6 279 Pfam PF13410 Glutathione S-transferase, C-terminal domain 175 244 7.2E-13 T 22-04-2016 PP4_RS14505 070f6faae2d34918a6da1b241407a9b6 279 Gene3D G3DSA:3.40.30.10 33 130 2.1E-24 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS14505 070f6faae2d34918a6da1b241407a9b6 279 SUPERFAMILY SSF47616 133 276 9.55E-33 T 22-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like PP4_RS14505 070f6faae2d34918a6da1b241407a9b6 279 Gene3D G3DSA:1.20.1050.10 131 254 1.1E-44 T 22-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like PP4_RS14505 070f6faae2d34918a6da1b241407a9b6 279 PANTHER PTHR11260:SF258 18 253 2.8E-126 T 22-04-2016 PP4_RS00720 890e82cad98f550370d0d5a76b7e5030 105 TIGRFAM TIGR02448 TIGR02448: conserverd hypothetical protein 1 104 2.4E-39 T 22-04-2016 IPR012661 Conserved hypothetical protein CHP02448 PP4_RS00720 890e82cad98f550370d0d5a76b7e5030 105 Pfam PF09498 Protein of unknown function (DUF2388) 35 104 1.3E-31 T 22-04-2016 IPR012661 Conserved hypothetical protein CHP02448 PP4_RS11800 0d49c07113d84cf031467022cbb5b15a 142 PANTHER PTHR42641 5 140 4.2E-52 T 22-04-2016 PP4_RS11800 0d49c07113d84cf031467022cbb5b15a 142 PANTHER PTHR42641:SF2 5 140 4.2E-52 T 22-04-2016 PP4_RS11800 0d49c07113d84cf031467022cbb5b15a 142 Pfam PF05232 Chlorhexidine efflux transporter 5 66 1.0E-23 T 22-04-2016 IPR007896 Chlorhexidine efflux transporter PP4_RS11800 0d49c07113d84cf031467022cbb5b15a 142 Pfam PF05232 Chlorhexidine efflux transporter 76 133 3.3E-21 T 22-04-2016 IPR007896 Chlorhexidine efflux transporter PP4_RS20430 617ca8554a1ae20b4d220c912c1be822 320 Gene3D G3DSA:3.90.180.10 11 140 1.5E-46 T 22-04-2016 IPR011032 GroES-like PP4_RS20430 617ca8554a1ae20b4d220c912c1be822 320 SUPERFAMILY SSF50129 10 136 8.07E-38 T 22-04-2016 IPR011032 GroES-like PP4_RS20430 617ca8554a1ae20b4d220c912c1be822 320 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 24 82 3.8E-8 T 22-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 PP4_RS20430 617ca8554a1ae20b4d220c912c1be822 320 SUPERFAMILY SSF51735 106 278 1.39E-41 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS20430 617ca8554a1ae20b4d220c912c1be822 320 PANTHER PTHR11695:SF610 11 316 4.2E-114 T 22-04-2016 PP4_RS20430 617ca8554a1ae20b4d220c912c1be822 320 Pfam PF00107 Zinc-binding dehydrogenase 146 259 3.9E-20 T 22-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 PP4_RS20430 617ca8554a1ae20b4d220c912c1be822 320 SMART SM00829 6 313 2.4E-46 T 22-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 PP4_RS20430 617ca8554a1ae20b4d220c912c1be822 320 PANTHER PTHR11695 11 316 4.2E-114 T 22-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PP4_RS20430 617ca8554a1ae20b4d220c912c1be822 320 Gene3D G3DSA:3.40.50.720 141 252 2.0E-21 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS20430 617ca8554a1ae20b4d220c912c1be822 320 TIGRFAM TIGR02824 quinone_pig3: putative NAD(P)H quinone oxidoreductase, PIG3 family 6 314 5.8E-118 T 22-04-2016 IPR014189 Quinone oxidoreductase PIG3 KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.- PP4_RS15080 d39a0f23cf9b063381a3b6640d8fab7a 430 Gene3D G3DSA:3.40.50.300 214 316 5.5E-10 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS15080 d39a0f23cf9b063381a3b6640d8fab7a 430 Gene3D G3DSA:3.40.50.300 1 95 2.2E-8 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS15080 d39a0f23cf9b063381a3b6640d8fab7a 430 SUPERFAMILY SSF52540 1 313 1.51E-16 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS15080 d39a0f23cf9b063381a3b6640d8fab7a 430 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 24 314 2.3E-27 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 PP4_RS24905 b274bac2284a6d07a6059180a427700a 766 TIGRFAM TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ 23 643 3.7E-263 T 22-04-2016 IPR022946 Uncharacterised protein family UPF0313 PP4_RS24905 b274bac2284a6d07a6059180a427700a 766 Pfam PF11842 Domain of unknown function (DUF3362) 593 743 2.6E-51 T 22-04-2016 IPR024560 Uncharacterised protein family UPF0313, C-terminal PP4_RS24905 b274bac2284a6d07a6059180a427700a 766 Gene3D G3DSA:3.80.30.20 373 613 9.7E-49 T 22-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe PP4_RS24905 b274bac2284a6d07a6059180a427700a 766 PANTHER PTHR32331:SF3 2 727 0.0 T 22-04-2016 PP4_RS24905 b274bac2284a6d07a6059180a427700a 766 SMART SM00729 375 628 2.0E-6 T 22-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 PP4_RS24905 b274bac2284a6d07a6059180a427700a 766 Pfam PF08497 Radical SAM N-terminal 23 378 3.0E-145 T 22-04-2016 IPR013704 Uncharacterised protein family UPF0313, N-terminal PP4_RS24905 b274bac2284a6d07a6059180a427700a 766 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 379 399 - T 22-04-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 PP4_RS24905 b274bac2284a6d07a6059180a427700a 766 SUPERFAMILY SSF102114 469 617 3.66E-13 T 22-04-2016 PP4_RS24905 b274bac2284a6d07a6059180a427700a 766 SUPERFAMILY SSF102114 354 439 3.66E-13 T 22-04-2016 PP4_RS24905 b274bac2284a6d07a6059180a427700a 766 Pfam PF04055 Radical SAM superfamily 379 584 8.6E-22 T 22-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 PP4_RS24905 b274bac2284a6d07a6059180a427700a 766 Hamap MF_01251 UPF0313 protein YgiQ [ygiQ]. 22 694 49.646 T 22-04-2016 IPR022946 Uncharacterised protein family UPF0313 PP4_RS24905 b274bac2284a6d07a6059180a427700a 766 PANTHER PTHR32331 2 727 0.0 T 22-04-2016 PP4_RS17545 be01985efa3666b5f8668c5fbbfc810b 315 SUPERFAMILY SSF48179 186 309 3.4E-25 T 22-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PP4_RS17545 be01985efa3666b5f8668c5fbbfc810b 315 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 7 310 2.3E-71 T 22-04-2016 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0015940|GO:0016491|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 PP4_RS17545 be01985efa3666b5f8668c5fbbfc810b 315 SUPERFAMILY SSF51735 7 160 8.08E-14 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS17545 be01985efa3666b5f8668c5fbbfc810b 315 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 186 307 9.3E-24 T 22-04-2016 IPR013752 Ketopantoate reductase, C-terminal domain GO:0016491|GO:0050661|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 PP4_RS17545 be01985efa3666b5f8668c5fbbfc810b 315 Pfam PF02558 Ketopantoate reductase PanE/ApbA 8 156 4.2E-36 T 22-04-2016 IPR013332 Ketopantoate reductase, N-terminal domain GO:0008677|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 PP4_RS17545 be01985efa3666b5f8668c5fbbfc810b 315 Gene3D G3DSA:1.10.1040.10 187 308 6.6E-24 T 22-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PP4_RS17545 be01985efa3666b5f8668c5fbbfc810b 315 Gene3D G3DSA:3.40.50.720 5 182 1.6E-43 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS17545 be01985efa3666b5f8668c5fbbfc810b 315 PANTHER PTHR21708 2 310 2.7E-61 T 22-04-2016 PP4_RS23030 2e8d1047574e02427c50065fedb07221 308 Pfam PF16220 Domain of unknown function (DUF4880) 13 53 2.9E-9 T 22-04-2016 IPR032623 FecR, N-terminal PP4_RS23030 2e8d1047574e02427c50065fedb07221 308 Pfam PF04773 FecR protein 106 196 6.6E-15 T 22-04-2016 IPR006860 FecR protein PP4_RS23030 2e8d1047574e02427c50065fedb07221 308 PANTHER PTHR30273 5 298 1.2E-31 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS23030 2e8d1047574e02427c50065fedb07221 308 PIRSF PIRSF018266 2 308 2.5E-71 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS23030 2e8d1047574e02427c50065fedb07221 308 Gene3D G3DSA:2.60.120.10 153 215 6.0E-4 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS23030 2e8d1047574e02427c50065fedb07221 308 PANTHER PTHR30273:SF2 5 298 1.2E-31 T 22-04-2016 PP4_RS20130 4502be83c035b4ab67bd9030bcb813ad 476 SMART SM01027 245 389 4.1E-52 T 22-04-2016 IPR022712 Beta-Casp domain PP4_RS20130 4502be83c035b4ab67bd9030bcb813ad 476 Gene3D G3DSA:3.60.15.10 8 255 3.8E-37 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS20130 4502be83c035b4ab67bd9030bcb813ad 476 PANTHER PTHR11203 5 476 1.1E-99 T 22-04-2016 PP4_RS20130 4502be83c035b4ab67bd9030bcb813ad 476 SUPERFAMILY SSF56281 6 476 9.61E-106 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS20130 4502be83c035b4ab67bd9030bcb813ad 476 Pfam PF10996 Beta-Casp domain 245 388 3.5E-26 T 22-04-2016 IPR022712 Beta-Casp domain PP4_RS20130 4502be83c035b4ab67bd9030bcb813ad 476 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 408 461 2.5E-9 T 22-04-2016 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain PP4_RS20130 4502be83c035b4ab67bd9030bcb813ad 476 Pfam PF00753 Metallo-beta-lactamase superfamily 26 238 6.2E-10 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS20130 4502be83c035b4ab67bd9030bcb813ad 476 PANTHER PTHR11203:SF11 5 476 1.1E-99 T 22-04-2016 PP4_RS20130 4502be83c035b4ab67bd9030bcb813ad 476 SMART SM00849 16 240 1.4E-9 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS11495 abd74cd58452e401082d95b3096f3df5 399 Gene3D G3DSA:1.20.1250.20 227 393 4.7E-13 T 22-04-2016 PP4_RS11495 abd74cd58452e401082d95b3096f3df5 399 Gene3D G3DSA:1.20.1250.20 21 202 6.2E-25 T 22-04-2016 PP4_RS11495 abd74cd58452e401082d95b3096f3df5 399 PANTHER PTHR23501:SF56 15 395 2.0E-110 T 22-04-2016 PP4_RS11495 abd74cd58452e401082d95b3096f3df5 399 SUPERFAMILY SSF103473 13 393 5.1E-52 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS11495 abd74cd58452e401082d95b3096f3df5 399 Pfam PF07690 Major Facilitator Superfamily 22 332 2.4E-31 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS11495 abd74cd58452e401082d95b3096f3df5 399 PANTHER PTHR23501 15 395 2.0E-110 T 22-04-2016 PP4_RS23825 1e83f70d079d20f909701cc718edf552 127 PANTHER PTHR14552 14 127 1.1E-41 T 22-04-2016 PP4_RS23825 1e83f70d079d20f909701cc718edf552 127 PANTHER PTHR14552:SF12 14 127 1.1E-41 T 22-04-2016 PP4_RS23825 1e83f70d079d20f909701cc718edf552 127 Pfam PF12643 MazG-like family 45 127 4.9E-18 T 22-04-2016 IPR025984 MazG-like domain KEGG: 00240+3.6.1.12 PP4_RS23825 1e83f70d079d20f909701cc718edf552 127 Gene3D G3DSA:1.10.287.1080 9 105 3.3E-27 T 22-04-2016 PP4_RS23825 1e83f70d079d20f909701cc718edf552 127 SUPERFAMILY SSF101386 10 126 1.6E-35 T 22-04-2016 PP4_RS23825 1e83f70d079d20f909701cc718edf552 127 PIRSF PIRSF029826 5 127 5.1E-46 T 22-04-2016 IPR011394 NTP Pyrophosphohydrolase MazG-related, RS21-C6 PP4_RS13215 2004c519f5fc0a8aa652e8df193242ad 308 SUPERFAMILY SSF52402 19 146 3.6E-12 T 22-04-2016 PP4_RS13215 2004c519f5fc0a8aa652e8df193242ad 308 Pfam PF00582 Universal stress protein family 20 146 5.1E-5 T 22-04-2016 IPR006016 UspA GO:0006950 PP4_RS13215 2004c519f5fc0a8aa652e8df193242ad 308 Pfam PF00582 Universal stress protein family 154 301 3.2E-15 T 22-04-2016 IPR006016 UspA GO:0006950 PP4_RS13215 2004c519f5fc0a8aa652e8df193242ad 308 SUPERFAMILY SSF52402 154 304 2.18E-23 T 22-04-2016 PP4_RS13215 2004c519f5fc0a8aa652e8df193242ad 308 Gene3D G3DSA:3.40.50.620 19 146 3.8E-9 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS13215 2004c519f5fc0a8aa652e8df193242ad 308 Gene3D G3DSA:3.40.50.620 154 304 1.8E-26 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS15455 0650a55c1df098a6c822913ae398ecae 335 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 33 90 5.1E-7 T 22-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 PP4_RS15455 0650a55c1df098a6c822913ae398ecae 335 SUPERFAMILY SSF50129 1 141 1.14E-32 T 22-04-2016 IPR011032 GroES-like PP4_RS15455 0650a55c1df098a6c822913ae398ecae 335 PANTHER PTHR11695:SF558 19 333 1.4E-129 T 22-04-2016 PP4_RS15455 0650a55c1df098a6c822913ae398ecae 335 Gene3D G3DSA:3.40.50.720 157 263 2.8E-17 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS15455 0650a55c1df098a6c822913ae398ecae 335 SMART SM00829 14 332 5.4E-12 T 22-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 PP4_RS15455 0650a55c1df098a6c822913ae398ecae 335 TIGRFAM TIGR02817 adh_fam_1: zinc-binding alcohol dehydrogenase family protein 2 335 6.8E-169 T 22-04-2016 IPR014182 Alcohol dehydrogenase, zinc-binding type 1 GO:0008270 PP4_RS15455 0650a55c1df098a6c822913ae398ecae 335 PANTHER PTHR11695 19 333 1.4E-129 T 22-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PP4_RS15455 0650a55c1df098a6c822913ae398ecae 335 Gene3D G3DSA:3.90.180.10 1 156 4.9E-36 T 22-04-2016 IPR011032 GroES-like PP4_RS15455 0650a55c1df098a6c822913ae398ecae 335 Pfam PF13602 Zinc-binding dehydrogenase 193 332 6.3E-25 T 22-04-2016 PP4_RS15455 0650a55c1df098a6c822913ae398ecae 335 SUPERFAMILY SSF51735 116 285 2.68E-35 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS10400 4c1ccae15db45b3c41d40690370b3ea2 483 SUPERFAMILY SSF53720 5 480 6.94E-155 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS10400 4c1ccae15db45b3c41d40690370b3ea2 483 Gene3D G3DSA:3.40.605.10 7 265 2.0E-86 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS10400 4c1ccae15db45b3c41d40690370b3ea2 483 PANTHER PTHR11699 9 480 9.1E-220 T 22-04-2016 PP4_RS10400 4c1ccae15db45b3c41d40690370b3ea2 483 Gene3D G3DSA:3.40.309.10 266 453 5.9E-69 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PP4_RS10400 4c1ccae15db45b3c41d40690370b3ea2 483 Pfam PF00171 Aldehyde dehydrogenase family 22 478 3.7E-159 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PP4_RS10400 4c1ccae15db45b3c41d40690370b3ea2 483 PANTHER PTHR11699:SF200 9 480 9.1E-220 T 22-04-2016 PP4_RS10400 4c1ccae15db45b3c41d40690370b3ea2 483 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 251 258 - T 22-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 PP4_RS10400 4c1ccae15db45b3c41d40690370b3ea2 483 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 279 290 - T 22-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 PP4_RS01230 bdb5d04cc1b834d3f9c2722ed6d5565b 266 SUPERFAMILY SSF53850 28 264 1.48E-63 T 22-04-2016 PP4_RS01230 bdb5d04cc1b834d3f9c2722ed6d5565b 266 Gene3D G3DSA:3.40.190.10 26 155 2.3E-45 T 22-04-2016 PP4_RS01230 bdb5d04cc1b834d3f9c2722ed6d5565b 266 Pfam PF03180 NLPA lipoprotein 28 263 7.3E-71 T 22-04-2016 IPR004872 Lipoprotein NlpA family PP4_RS01230 bdb5d04cc1b834d3f9c2722ed6d5565b 266 PANTHER PTHR30429 1 265 6.2E-105 T 22-04-2016 IPR004872 Lipoprotein NlpA family PP4_RS13825 c1ce65969b3d3e0af1dce20229f58c39 134 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 91 126 5.4E-9 T 22-04-2016 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 PP4_RS13825 c1ce65969b3d3e0af1dce20229f58c39 134 SUPERFAMILY SSF109635 1 92 5.49E-24 T 22-04-2016 PP4_RS13825 c1ce65969b3d3e0af1dce20229f58c39 134 TIGRFAM TIGR02420 dksA: RNA polymerase-binding protein DksA 15 123 1.4E-36 T 22-04-2016 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 PP4_RS13825 c1ce65969b3d3e0af1dce20229f58c39 134 Hamap MF_00926 RNA polymerase-binding transcription factor DksA [dksA]. 11 132 24.563 T 22-04-2016 IPR012784 RNA polymerase-binding transcription factor DksA GO:0008270 PP4_RS13825 c1ce65969b3d3e0af1dce20229f58c39 134 SUPERFAMILY SSF57716 93 131 3.56E-8 T 22-04-2016 PP4_RS13825 c1ce65969b3d3e0af1dce20229f58c39 134 PANTHER PTHR33823:SF2 9 133 1.1E-28 T 22-04-2016 PP4_RS13825 c1ce65969b3d3e0af1dce20229f58c39 134 PANTHER PTHR33823 9 133 1.1E-28 T 22-04-2016 PP4_RS00385 4c91385f27cd3f0a31f1a0a2944ba461 71 PANTHER PTHR39324 1 71 1.4E-24 T 22-04-2016 PP4_RS00385 4c91385f27cd3f0a31f1a0a2944ba461 71 SUPERFAMILY SSF89807 6 69 9.55E-27 T 22-04-2016 IPR009923 Dodecin PP4_RS00385 4c91385f27cd3f0a31f1a0a2944ba461 71 Pfam PF07311 Dodecin 6 68 3.3E-30 T 22-04-2016 IPR009923 Dodecin PP4_RS00385 4c91385f27cd3f0a31f1a0a2944ba461 71 Gene3D G3DSA:3.30.1660.10 4 69 8.8E-34 T 22-04-2016 IPR025543 Dodecin-like PP4_RS00385 4c91385f27cd3f0a31f1a0a2944ba461 71 PANTHER PTHR39324:SF1 1 71 1.4E-24 T 22-04-2016 PP4_RS01130 fd5bec825722b4575c7462eb1c124c47 260 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 252 9.6E-23 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS01130 fd5bec825722b4575c7462eb1c124c47 260 PANTHER PTHR30151 5 258 1.7E-116 T 22-04-2016 PP4_RS01130 fd5bec825722b4575c7462eb1c124c47 260 PANTHER PTHR30151:SF12 5 258 1.7E-116 T 22-04-2016 PP4_RS01130 fd5bec825722b4575c7462eb1c124c47 260 SUPERFAMILY SSF161098 57 238 7.85E-32 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS01130 fd5bec825722b4575c7462eb1c124c47 260 Gene3D G3DSA:1.10.3720.10 55 247 5.2E-26 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS09565 f9862a940ca1c561fee21bb67b65cd7e 405 Gene3D G3DSA:1.20.1250.20 27 196 2.7E-26 T 22-04-2016 PP4_RS09565 f9862a940ca1c561fee21bb67b65cd7e 405 Gene3D G3DSA:1.20.1250.20 215 395 1.3E-8 T 22-04-2016 PP4_RS09565 f9862a940ca1c561fee21bb67b65cd7e 405 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 11 389 7.3E-75 T 22-04-2016 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 PP4_RS09565 f9862a940ca1c561fee21bb67b65cd7e 405 SUPERFAMILY SSF103473 5 394 1.23E-53 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS09565 f9862a940ca1c561fee21bb67b65cd7e 405 PANTHER PTHR23502 11 394 3.6E-92 T 22-04-2016 PP4_RS09565 f9862a940ca1c561fee21bb67b65cd7e 405 Pfam PF07690 Major Facilitator Superfamily 19 353 1.7E-40 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS09565 f9862a940ca1c561fee21bb67b65cd7e 405 PANTHER PTHR23502:SF19 11 394 3.6E-92 T 22-04-2016 PP4_RS05795 f03afdc7e697f5e78d8e5e74c558a5c6 443 SMART SM00729 141 367 1.7E-49 T 22-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 PP4_RS05795 f03afdc7e697f5e78d8e5e74c558a5c6 443 PANTHER PTHR11918 1 443 4.0E-240 T 22-04-2016 IPR023970 Methylthiotransferase/radical SAM-type protein PP4_RS05795 f03afdc7e697f5e78d8e5e74c558a5c6 443 Pfam PF04055 Radical SAM superfamily 147 324 9.0E-29 T 22-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 PP4_RS05795 f03afdc7e697f5e78d8e5e74c558a5c6 443 Pfam PF00919 Uncharacterized protein family UPF0004 9 90 1.0E-20 T 22-04-2016 IPR013848 Methylthiotransferase, N-terminal GO:0003824|GO:0009451|GO:0051539 PP4_RS05795 f03afdc7e697f5e78d8e5e74c558a5c6 443 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 9 440 1.4E-101 T 22-04-2016 IPR005839 Methylthiotransferase GO:0016740|GO:0043412|GO:0051539 PP4_RS05795 f03afdc7e697f5e78d8e5e74c558a5c6 443 SUPERFAMILY SSF102114 111 372 3.27E-51 T 22-04-2016 PP4_RS05795 f03afdc7e697f5e78d8e5e74c558a5c6 443 PANTHER PTHR11918:SF57 1 443 4.0E-240 T 22-04-2016 PP4_RS05795 f03afdc7e697f5e78d8e5e74c558a5c6 443 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 145 165 - T 22-04-2016 IPR020612 Methylthiotransferase, conserved site GO:0051539 PP4_RS05795 f03afdc7e697f5e78d8e5e74c558a5c6 443 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 9 439 1.0E-173 T 22-04-2016 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 PP4_RS05795 f03afdc7e697f5e78d8e5e74c558a5c6 443 Gene3D G3DSA:2.40.50.140 382 443 2.3E-24 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS05795 f03afdc7e697f5e78d8e5e74c558a5c6 443 Gene3D G3DSA:3.80.30.20 139 378 3.5E-70 T 22-04-2016 IPR023404 Radical SAM, alpha/beta horseshoe PP4_RS05795 f03afdc7e697f5e78d8e5e74c558a5c6 443 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 8 442 60.871 T 22-04-2016 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 PP4_RS25950 52068ca7c263424e99b7abe05d23a094 817 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 66 746 8.2E-179 T 22-04-2016 PP4_RS25950 52068ca7c263424e99b7abe05d23a094 817 Pfam PF17092 Penicillin-binding protein OB-like domain 317 421 2.1E-23 T 22-04-2016 IPR031376 Penicillin-binding protein, OB-like domain KEGG: 00230+2.4.2.-|KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00514+2.4.2.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.-|UniPathway: UPA00219 PP4_RS25950 52068ca7c263424e99b7abe05d23a094 817 Pfam PF00905 Penicillin binding protein transpeptidase domain 426 737 8.3E-32 T 22-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 PP4_RS25950 52068ca7c263424e99b7abe05d23a094 817 PANTHER PTHR32282:SF5 418 609 7.5E-264 T 22-04-2016 PP4_RS25950 52068ca7c263424e99b7abe05d23a094 817 PANTHER PTHR32282:SF5 2 311 7.5E-264 T 22-04-2016 PP4_RS25950 52068ca7c263424e99b7abe05d23a094 817 PANTHER PTHR32282 418 609 7.5E-264 T 22-04-2016 PP4_RS25950 52068ca7c263424e99b7abe05d23a094 817 PANTHER PTHR32282:SF5 652 815 7.5E-264 T 22-04-2016 PP4_RS25950 52068ca7c263424e99b7abe05d23a094 817 Gene3D G3DSA:1.10.3810.10 56 232 1.8E-70 T 22-04-2016 PP4_RS25950 52068ca7c263424e99b7abe05d23a094 817 Pfam PF00912 Transglycosylase 56 230 1.9E-62 T 22-04-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 PP4_RS25950 52068ca7c263424e99b7abe05d23a094 817 PANTHER PTHR32282 652 815 7.5E-264 T 22-04-2016 PP4_RS25950 52068ca7c263424e99b7abe05d23a094 817 PANTHER PTHR32282 2 311 7.5E-264 T 22-04-2016 PP4_RS25950 52068ca7c263424e99b7abe05d23a094 817 Gene3D G3DSA:3.40.710.10 653 795 1.0E-133 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS25950 52068ca7c263424e99b7abe05d23a094 817 Gene3D G3DSA:3.40.710.10 419 608 1.0E-133 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS25950 52068ca7c263424e99b7abe05d23a094 817 Gene3D G3DSA:3.40.710.10 233 314 1.0E-133 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS25950 52068ca7c263424e99b7abe05d23a094 817 SUPERFAMILY SSF53955 44 256 3.09E-75 T 22-04-2016 IPR023346 Lysozyme-like domain PP4_RS25950 52068ca7c263424e99b7abe05d23a094 817 Gene3D G3DSA:2.40.50.140 343 418 1.5E-19 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS25950 52068ca7c263424e99b7abe05d23a094 817 SUPERFAMILY SSF56601 652 795 1.19E-127 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS25950 52068ca7c263424e99b7abe05d23a094 817 SUPERFAMILY SSF56601 419 607 1.19E-127 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS25950 52068ca7c263424e99b7abe05d23a094 817 SUPERFAMILY SSF56601 212 234 1.19E-127 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS25950 52068ca7c263424e99b7abe05d23a094 817 SUPERFAMILY SSF56601 263 314 1.19E-127 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS15995 a71f474bd37241adf1f1ea488a0f1541 262 ProSitePatterns PS00211 ABC transporters family signature. 151 165 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS15995 a71f474bd37241adf1f1ea488a0f1541 262 PANTHER PTHR24220 11 259 5.0E-109 T 22-04-2016 PP4_RS15995 a71f474bd37241adf1f1ea488a0f1541 262 Gene3D G3DSA:3.40.50.300 16 254 2.7E-57 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS15995 a71f474bd37241adf1f1ea488a0f1541 262 SMART SM00382 34 230 9.6E-8 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS15995 a71f474bd37241adf1f1ea488a0f1541 262 Pfam PF00005 ABC transporter 28 178 2.0E-27 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS15995 a71f474bd37241adf1f1ea488a0f1541 262 SUPERFAMILY SSF52540 17 249 4.24E-51 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS15995 a71f474bd37241adf1f1ea488a0f1541 262 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 10 262 4.0E-117 T 22-04-2016 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 PP4_RS15995 a71f474bd37241adf1f1ea488a0f1541 262 PANTHER PTHR24220:SF585 11 259 5.0E-109 T 22-04-2016 PP4_RS08025 e9b630765e409f23a5a864c573a23bec 437 Pfam PF05525 Branched-chain amino acid transport protein 7 427 9.9E-157 T 22-04-2016 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 PP4_RS08025 e9b630765e409f23a5a864c573a23bec 437 PANTHER PTHR30588:SF0 1 437 3.3E-212 T 22-04-2016 PP4_RS08025 e9b630765e409f23a5a864c573a23bec 437 PANTHER PTHR30588 1 437 3.3E-212 T 22-04-2016 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 PP4_RS08025 e9b630765e409f23a5a864c573a23bec 437 TIGRFAM TIGR00796 livcs: branched-chain amino acid transport system II carrier protein 13 414 1.3E-159 T 22-04-2016 IPR004685 Branched-chain amino acid transport system II carrier protein GO:0015658|GO:0015803|GO:0016021 PP4_RS15965 7f936ffdc0c958e3bc91b7a31418710d 221 SUPERFAMILY SSF46894 145 213 1.19E-17 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS15965 7f936ffdc0c958e3bc91b7a31418710d 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 170 186 3.6E-10 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS15965 7f936ffdc0c958e3bc91b7a31418710d 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 170 3.6E-10 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS15965 7f936ffdc0c958e3bc91b7a31418710d 221 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 186 198 3.6E-10 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS15965 7f936ffdc0c958e3bc91b7a31418710d 221 Gene3D G3DSA:3.40.50.2300 1 121 2.8E-29 T 22-04-2016 PP4_RS15965 7f936ffdc0c958e3bc91b7a31418710d 221 Pfam PF00196 Bacterial regulatory proteins, luxR family 155 210 1.2E-20 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS15965 7f936ffdc0c958e3bc91b7a31418710d 221 Pfam PF00072 Response regulator receiver domain 4 117 9.5E-29 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS15965 7f936ffdc0c958e3bc91b7a31418710d 221 Gene3D G3DSA:1.10.10.10 122 210 2.6E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS15965 7f936ffdc0c958e3bc91b7a31418710d 221 SMART SM00448 2 116 3.6E-25 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS15965 7f936ffdc0c958e3bc91b7a31418710d 221 PANTHER PTHR26402:SF511 2 210 1.9E-72 T 22-04-2016 PP4_RS15965 7f936ffdc0c958e3bc91b7a31418710d 221 SUPERFAMILY SSF52172 1 131 1.57E-28 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS15965 7f936ffdc0c958e3bc91b7a31418710d 221 ProSitePatterns PS00622 LuxR-type HTH domain signature. 170 197 - T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS15965 7f936ffdc0c958e3bc91b7a31418710d 221 PANTHER PTHR26402 2 210 1.9E-72 T 22-04-2016 PP4_RS15965 7f936ffdc0c958e3bc91b7a31418710d 221 SMART SM00421 153 210 6.6E-20 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS12920 7c862f5edf2a219f6ee1151b8ef443ce 442 Pfam PF07690 Major Facilitator Superfamily 30 396 1.1E-46 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS12920 7c862f5edf2a219f6ee1151b8ef443ce 442 SUPERFAMILY SSF103473 8 432 4.19E-82 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS12920 7c862f5edf2a219f6ee1151b8ef443ce 442 Gene3D G3DSA:1.20.1250.20 20 224 2.5E-44 T 22-04-2016 PP4_RS12920 7c862f5edf2a219f6ee1151b8ef443ce 442 Gene3D G3DSA:1.20.1250.20 248 431 2.4E-22 T 22-04-2016 PP4_RS12920 7c862f5edf2a219f6ee1151b8ef443ce 442 PANTHER PTHR11662:SF3 8 432 4.2E-143 T 22-04-2016 PP4_RS12920 7c862f5edf2a219f6ee1151b8ef443ce 442 PANTHER PTHR11662 8 432 4.2E-143 T 22-04-2016 PP4_RS06145 7986ec5ffc5cf8ff3ee0fc82fa992a13 314 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 1 314 3.5E-106 T 22-04-2016 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 PP4_RS06145 7986ec5ffc5cf8ff3ee0fc82fa992a13 314 SMART SM00729 1 201 5.9E-9 T 22-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 PP4_RS06145 7986ec5ffc5cf8ff3ee0fc82fa992a13 314 SUPERFAMILY SSF102114 2 261 1.27E-69 T 22-04-2016 PP4_RS06145 7986ec5ffc5cf8ff3ee0fc82fa992a13 314 Pfam PF04055 Radical SAM superfamily 1 161 2.0E-31 T 22-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 PP4_RS06145 7986ec5ffc5cf8ff3ee0fc82fa992a13 314 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 3 14 - T 22-04-2016 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 PP4_RS06145 7986ec5ffc5cf8ff3ee0fc82fa992a13 314 PANTHER PTHR22960 1 266 3.4E-111 T 22-04-2016 PP4_RS06145 7986ec5ffc5cf8ff3ee0fc82fa992a13 314 Hamap MF_01225_B Cyclic pyranopterin monophosphate synthase [moaA]. 1 314 35.684 T 22-04-2016 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 PP4_RS06145 7986ec5ffc5cf8ff3ee0fc82fa992a13 314 Pfam PF06463 Molybdenum Cofactor Synthesis C 168 297 3.2E-39 T 22-04-2016 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 PP4_RS06145 7986ec5ffc5cf8ff3ee0fc82fa992a13 314 Gene3D G3DSA:3.20.20.70 2 284 2.2E-67 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS06145 7986ec5ffc5cf8ff3ee0fc82fa992a13 314 Pfam PF13353 4Fe-4S single cluster domain 5 91 2.0E-7 T 22-04-2016 PP4_RS12360 56b9de1b041c0d05e32e60edd2d942d6 838 PANTHER PTHR32282:SF4 572 838 0.0 T 22-04-2016 PP4_RS12360 56b9de1b041c0d05e32e60edd2d942d6 838 PANTHER PTHR32282:SF4 9 548 0.0 T 22-04-2016 PP4_RS12360 56b9de1b041c0d05e32e60edd2d942d6 838 Gene3D G3DSA:3.40.50.300 487 556 1.1E-53 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS12360 56b9de1b041c0d05e32e60edd2d942d6 838 Gene3D G3DSA:3.40.50.300 719 836 1.1E-53 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS12360 56b9de1b041c0d05e32e60edd2d942d6 838 Gene3D G3DSA:3.40.50.300 366 482 1.1E-46 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS12360 56b9de1b041c0d05e32e60edd2d942d6 838 Gene3D G3DSA:3.40.50.300 14 59 1.1E-46 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS12360 56b9de1b041c0d05e32e60edd2d942d6 838 ProSitePatterns PS00211 ABC transporters family signature. 375 389 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS12360 56b9de1b041c0d05e32e60edd2d942d6 838 ProSitePatterns PS00211 ABC transporters family signature. 728 742 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS12360 56b9de1b041c0d05e32e60edd2d942d6 838 Gene3D G3DSA:1.10.8.280 156 283 2.7E-26 T 22-04-2016 PP4_RS12360 56b9de1b041c0d05e32e60edd2d942d6 838 SUPERFAMILY SSF52540 505 546 2.28E-45 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS12360 56b9de1b041c0d05e32e60edd2d942d6 838 SUPERFAMILY SSF52540 578 811 2.28E-45 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS12360 56b9de1b041c0d05e32e60edd2d942d6 838 PANTHER PTHR32282 572 838 0.0 T 22-04-2016 PP4_RS12360 56b9de1b041c0d05e32e60edd2d942d6 838 PANTHER PTHR32282 9 548 0.0 T 22-04-2016 PP4_RS12360 56b9de1b041c0d05e32e60edd2d942d6 838 Gene3D G3DSA:1.20.1580.10 592 718 8.1E-48 T 22-04-2016 PP4_RS12360 56b9de1b041c0d05e32e60edd2d942d6 838 Gene3D G3DSA:1.20.1580.10 284 365 6.8E-31 T 22-04-2016 PP4_RS12360 56b9de1b041c0d05e32e60edd2d942d6 838 Gene3D G3DSA:1.20.1580.10 101 154 6.8E-31 T 22-04-2016 PP4_RS12360 56b9de1b041c0d05e32e60edd2d942d6 838 Pfam PF00005 ABC transporter 508 759 9.4E-9 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS12360 56b9de1b041c0d05e32e60edd2d942d6 838 SUPERFAMILY SSF52540 149 194 1.42E-30 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS12360 56b9de1b041c0d05e32e60edd2d942d6 838 SUPERFAMILY SSF52540 17 95 1.42E-30 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS12360 56b9de1b041c0d05e32e60edd2d942d6 838 SUPERFAMILY SSF52540 318 457 1.42E-30 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS01365 fc6b666fbf4117884b80319621ec77d6 301 Pfam PF08443 RimK-like ATP-grasp domain 98 285 3.4E-69 T 22-04-2016 IPR013651 ATP-grasp fold, RimK-type PP4_RS01365 fc6b666fbf4117884b80319621ec77d6 301 PANTHER PTHR21621 1 288 1.6E-126 T 22-04-2016 PP4_RS01365 fc6b666fbf4117884b80319621ec77d6 301 Gene3D G3DSA:3.30.470.20 173 276 6.7E-35 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PP4_RS01365 fc6b666fbf4117884b80319621ec77d6 301 PANTHER PTHR21621:SF0 1 288 1.6E-126 T 22-04-2016 PP4_RS01365 fc6b666fbf4117884b80319621ec77d6 301 Gene3D G3DSA:3.40.50.20 8 102 3.3E-17 T 22-04-2016 IPR016185 Pre-ATP-grasp domain PP4_RS01365 fc6b666fbf4117884b80319621ec77d6 301 Hamap MF_01552 Ribosomal protein S6--L-glutamate ligase [rimK]. 1 295 55.144 T 22-04-2016 IPR023533 Ribosomal protein S6--L-glutamate ligase RimK PP4_RS01365 fc6b666fbf4117884b80319621ec77d6 301 Gene3D G3DSA:3.30.1490.20 103 172 1.2E-6 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 PP4_RS01365 fc6b666fbf4117884b80319621ec77d6 301 SUPERFAMILY SSF56059 98 288 8.66E-48 T 22-04-2016 PP4_RS01365 fc6b666fbf4117884b80319621ec77d6 301 TIGRFAM TIGR00768 rimK_fam: alpha-L-glutamate ligase, RimK family 2 285 1.9E-85 T 22-04-2016 IPR004666 Ribosomal S6 modification enzyme RimK/Lysine biosynthesis enzyme LysX GO:0006464 PP4_RS17085 e82b3f6b256e2d6a063a40db1a166067 716 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 699 716 - T 22-04-2016 IPR010917 TonB-dependent receptor, conserved site PP4_RS17085 e82b3f6b256e2d6a063a40db1a166067 716 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 59 716 3.4E-78 T 22-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 PP4_RS17085 e82b3f6b256e2d6a063a40db1a166067 716 PANTHER PTHR32552:SF10 34 716 1.2E-144 T 22-04-2016 PP4_RS17085 e82b3f6b256e2d6a063a40db1a166067 716 PANTHER PTHR32552 34 716 1.2E-144 T 22-04-2016 PP4_RS17085 e82b3f6b256e2d6a063a40db1a166067 716 Gene3D G3DSA:2.40.170.20 176 716 3.4E-119 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS17085 e82b3f6b256e2d6a063a40db1a166067 716 Pfam PF07715 TonB-dependent Receptor Plug Domain 57 156 2.8E-16 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS17085 e82b3f6b256e2d6a063a40db1a166067 716 Pfam PF00593 TonB dependent receptor 476 714 1.1E-28 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS17085 e82b3f6b256e2d6a063a40db1a166067 716 SUPERFAMILY SSF56935 40 716 3.46E-117 T 22-04-2016 PP4_RS17085 e82b3f6b256e2d6a063a40db1a166067 716 Gene3D G3DSA:2.170.130.10 40 163 2.0E-28 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS26130 0372d686b493a15a665d81e5d69cf839 532 Pfam PF00732 GMC oxidoreductase 35 296 3.2E-52 T 22-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 PP4_RS26130 0372d686b493a15a665d81e5d69cf839 532 PANTHER PTHR11552 7 528 4.0E-141 T 22-04-2016 PP4_RS26130 0372d686b493a15a665d81e5d69cf839 532 PANTHER PTHR11552:SF92 7 528 4.0E-141 T 22-04-2016 PP4_RS26130 0372d686b493a15a665d81e5d69cf839 532 Pfam PF05199 GMC oxidoreductase 381 519 3.6E-23 T 22-04-2016 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 PP4_RS26130 0372d686b493a15a665d81e5d69cf839 532 Gene3D G3DSA:3.50.50.60 193 297 1.0E-70 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS26130 0372d686b493a15a665d81e5d69cf839 532 Gene3D G3DSA:3.50.50.60 399 412 1.0E-70 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS26130 0372d686b493a15a665d81e5d69cf839 532 Gene3D G3DSA:3.50.50.60 459 525 1.0E-70 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS26130 0372d686b493a15a665d81e5d69cf839 532 Gene3D G3DSA:3.50.50.60 30 148 1.0E-70 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS26130 0372d686b493a15a665d81e5d69cf839 532 SUPERFAMILY SSF51905 465 528 2.16E-55 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS26130 0372d686b493a15a665d81e5d69cf839 532 SUPERFAMILY SSF51905 25 295 2.16E-55 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS06230 f0a873bd05d76990100dbcd4f1d0bab6 496 PANTHER PTHR11699 1 494 2.7E-303 T 22-04-2016 PP4_RS06230 f0a873bd05d76990100dbcd4f1d0bab6 496 Gene3D G3DSA:3.40.309.10 281 465 3.7E-61 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PP4_RS06230 f0a873bd05d76990100dbcd4f1d0bab6 496 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 267 274 - T 22-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 PP4_RS06230 f0a873bd05d76990100dbcd4f1d0bab6 496 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 296 307 - T 22-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 PP4_RS06230 f0a873bd05d76990100dbcd4f1d0bab6 496 SUPERFAMILY SSF53720 16 494 1.83E-159 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS06230 f0a873bd05d76990100dbcd4f1d0bab6 496 PANTHER PTHR11699:SF174 1 494 2.7E-303 T 22-04-2016 PP4_RS06230 f0a873bd05d76990100dbcd4f1d0bab6 496 Pfam PF00171 Aldehyde dehydrogenase family 34 491 9.0E-164 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PP4_RS06230 f0a873bd05d76990100dbcd4f1d0bab6 496 Gene3D G3DSA:3.40.605.10 19 280 6.1E-96 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS14050 c969f7d8d579a7a0114f7e837bc007d1 157 PANTHER PTHR34771 3 157 3.8E-13 T 22-04-2016 PP4_RS14050 c969f7d8d579a7a0114f7e837bc007d1 157 Pfam PF07012 Curlin associated repeat 95 124 1.4E-8 T 22-04-2016 IPR009742 Curlin associated GO:0007155|GO:0009289 PP4_RS14050 c969f7d8d579a7a0114f7e837bc007d1 157 Pfam PF07012 Curlin associated repeat 124 156 2.1E-6 T 22-04-2016 IPR009742 Curlin associated GO:0007155|GO:0009289 PP4_RS14050 c969f7d8d579a7a0114f7e837bc007d1 157 Pfam PF07012 Curlin associated repeat 75 102 4.4E-6 T 22-04-2016 IPR009742 Curlin associated GO:0007155|GO:0009289 PP4_RS14050 c969f7d8d579a7a0114f7e837bc007d1 157 Pfam PF07012 Curlin associated repeat 102 135 7.7E-10 T 22-04-2016 IPR009742 Curlin associated GO:0007155|GO:0009289 PP4_RS15620 e9ebe6b27dcf019d1858da0306fd318a 784 SMART SM00028 700 733 3.5E-4 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS15620 e9ebe6b27dcf019d1858da0306fd318a 784 SMART SM00028 734 767 170.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS15620 e9ebe6b27dcf019d1858da0306fd318a 784 SMART SM00028 594 627 0.01 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS15620 e9ebe6b27dcf019d1858da0306fd318a 784 SMART SM00028 628 661 34.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS15620 e9ebe6b27dcf019d1858da0306fd318a 784 Pfam PF14559 Tetratricopeptide repeat 607 655 1.3E-5 T 22-04-2016 PP4_RS15620 e9ebe6b27dcf019d1858da0306fd318a 784 Pfam PF14559 Tetratricopeptide repeat 676 735 5.9E-6 T 22-04-2016 PP4_RS15620 e9ebe6b27dcf019d1858da0306fd318a 784 Pfam PF13646 HEAT repeats 510 588 4.9E-7 T 22-04-2016 PP4_RS15620 e9ebe6b27dcf019d1858da0306fd318a 784 PANTHER PTHR23083 567 771 2.5E-24 T 22-04-2016 PP4_RS15620 e9ebe6b27dcf019d1858da0306fd318a 784 Gene3D G3DSA:1.10.710.10 321 437 1.7E-41 T 22-04-2016 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674|UniPathway: UPA00653 PP4_RS15620 e9ebe6b27dcf019d1858da0306fd318a 784 Gene3D G3DSA:1.10.710.10 184 282 1.7E-41 T 22-04-2016 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674|UniPathway: UPA00653 PP4_RS15620 e9ebe6b27dcf019d1858da0306fd318a 784 Gene3D G3DSA:1.10.710.10 52 95 1.7E-41 T 22-04-2016 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674|UniPathway: UPA00653 PP4_RS15620 e9ebe6b27dcf019d1858da0306fd318a 784 SUPERFAMILY SSF48695 52 75 2.0E-66 T 22-04-2016 IPR011031 Multihaem cytochrome PP4_RS15620 e9ebe6b27dcf019d1858da0306fd318a 784 SUPERFAMILY SSF48695 120 257 2.0E-66 T 22-04-2016 IPR011031 Multihaem cytochrome PP4_RS15620 e9ebe6b27dcf019d1858da0306fd318a 784 SUPERFAMILY SSF48695 300 566 2.0E-66 T 22-04-2016 IPR011031 Multihaem cytochrome PP4_RS15620 e9ebe6b27dcf019d1858da0306fd318a 784 Pfam PF13435 Cytochrome c554 and c-prime 194 231 0.0045 T 22-04-2016 IPR023155 Cytochrome c-552/4 KEGG: 00910+1.7.2.2|MetaCyc: PWY-5674|UniPathway: UPA00653 PP4_RS15620 e9ebe6b27dcf019d1858da0306fd318a 784 Gene3D G3DSA:1.25.10.10 489 580 1.2E-11 T 22-04-2016 IPR011989 Armadillo-like helical PP4_RS15620 e9ebe6b27dcf019d1858da0306fd318a 784 Pfam PF09699 Doubled CXXCH motif (Paired_CXXCH_1) 335 360 4.8E-5 T 22-04-2016 IPR010177 Doubled CXXCH motif UniPathway: UPA00045 PP4_RS15620 e9ebe6b27dcf019d1858da0306fd318a 784 Gene3D G3DSA:1.25.40.10 581 769 3.7E-35 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS15620 e9ebe6b27dcf019d1858da0306fd318a 784 SUPERFAMILY SSF48452 575 767 1.9E-21 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS18210 4838c9207e6e5bcb67bd795ac8cfb033 381 PANTHER PTHR19328 35 378 2.1E-86 T 22-04-2016 PP4_RS18210 4838c9207e6e5bcb67bd795ac8cfb033 381 SUPERFAMILY SSF50952 35 377 6.15E-49 T 22-04-2016 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 PP4_RS18210 4838c9207e6e5bcb67bd795ac8cfb033 381 Gene3D G3DSA:2.120.10.30 22 377 3.2E-107 T 22-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like PP4_RS18210 4838c9207e6e5bcb67bd795ac8cfb033 381 Pfam PF07995 Glucose / Sorbosone dehydrogenase 44 376 1.3E-138 T 22-04-2016 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 PP4_RS06975 af4fe8c8850b7949be1f852680bc828b 439 SMART SM01230 101 357 1.5E-99 T 22-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS06975 af4fe8c8850b7949be1f852680bc828b 439 Gene3D G3DSA:3.30.590.10 104 423 2.0E-90 T 22-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 PP4_RS06975 af4fe8c8850b7949be1f852680bc828b 439 Pfam PF00120 Glutamine synthetase, catalytic domain 103 433 7.0E-105 T 22-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS06975 af4fe8c8850b7949be1f852680bc828b 439 SUPERFAMILY SSF55931 102 434 4.02E-101 T 22-04-2016 PP4_RS06975 af4fe8c8850b7949be1f852680bc828b 439 SUPERFAMILY SSF54368 8 99 1.57E-10 T 22-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS06975 af4fe8c8850b7949be1f852680bc828b 439 PANTHER PTHR20852:SF63 9 439 2.3E-206 T 22-04-2016 PP4_RS06975 af4fe8c8850b7949be1f852680bc828b 439 PANTHER PTHR20852 9 439 2.3E-206 T 22-04-2016 PP4_RS06975 af4fe8c8850b7949be1f852680bc828b 439 Gene3D G3DSA:3.10.20.70 7 101 3.8E-5 T 22-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS15860 001180bee4d24dbaef5cda03727603c8 449 PANTHER PTHR10314 153 442 7.9E-195 T 22-04-2016 PP4_RS15860 001180bee4d24dbaef5cda03727603c8 449 PANTHER PTHR10314 40 132 7.9E-195 T 22-04-2016 PP4_RS15860 001180bee4d24dbaef5cda03727603c8 449 PANTHER PTHR10314 11 22 7.9E-195 T 22-04-2016 PP4_RS15860 001180bee4d24dbaef5cda03727603c8 449 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 109 123 - T 22-04-2016 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 PP4_RS15860 001180bee4d24dbaef5cda03727603c8 449 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 90 403 4.1E-50 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PP4_RS15860 001180bee4d24dbaef5cda03727603c8 449 PANTHER PTHR10314:SF9 153 442 7.9E-195 T 22-04-2016 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 PP4_RS15860 001180bee4d24dbaef5cda03727603c8 449 PANTHER PTHR10314:SF9 40 132 7.9E-195 T 22-04-2016 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 PP4_RS15860 001180bee4d24dbaef5cda03727603c8 449 PANTHER PTHR10314:SF9 11 22 7.9E-195 T 22-04-2016 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 PP4_RS15860 001180bee4d24dbaef5cda03727603c8 449 Gene3D G3DSA:3.40.50.1100 164 433 2.5E-41 T 22-04-2016 PP4_RS15860 001180bee4d24dbaef5cda03727603c8 449 SUPERFAMILY SSF53686 78 435 3.57E-53 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PP4_RS15860 001180bee4d24dbaef5cda03727603c8 449 TIGRFAM TIGR02035 D_Ser_am_lyase: D-serine ammonia-lyase 13 439 2.4E-209 T 22-04-2016 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 PP4_RS15860 001180bee4d24dbaef5cda03727603c8 449 Hamap MF_01030 D-serine dehydratase [dsdA]. 1 449 254.004 T 22-04-2016 IPR011780 D-serine ammonia-lyase GO:0008721|GO:0030170|GO:0046416 KEGG: 00260+4.3.1.18 PP4_RS13765 7db44abb5d1fd711e1b6cc258158447e 309 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 6 117 3.6E-9 T 22-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 PP4_RS13765 7db44abb5d1fd711e1b6cc258158447e 309 SMART SM00859 6 121 1.2E-4 T 22-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 PP4_RS13765 7db44abb5d1fd711e1b6cc258158447e 309 SUPERFAMILY SSF55347 131 269 2.09E-58 T 22-04-2016 PP4_RS13765 7db44abb5d1fd711e1b6cc258158447e 309 Gene3D G3DSA:3.40.50.720 1 143 7.1E-70 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS13765 7db44abb5d1fd711e1b6cc258158447e 309 Gene3D G3DSA:3.30.360.10 144 268 1.1E-64 T 22-04-2016 PP4_RS13765 7db44abb5d1fd711e1b6cc258158447e 309 SUPERFAMILY SSF51735 1 155 3.71E-24 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS13765 7db44abb5d1fd711e1b6cc258158447e 309 PANTHER PTHR41706 1 300 2.4E-117 T 22-04-2016 PP4_RS13765 7db44abb5d1fd711e1b6cc258158447e 309 PIRSF PIRSF015689 1 298 9.2E-132 T 22-04-2016 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 PP4_RS13765 7db44abb5d1fd711e1b6cc258158447e 309 Pfam PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation 131 268 1.3E-63 T 22-04-2016 IPR015426 Acetaldehyde dehydrogenase, C-terminal GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 PP4_RS13765 7db44abb5d1fd711e1b6cc258158447e 309 Hamap MF_01657 Acetaldehyde dehydrogenase [mhpF]. 1 309 144.767 T 22-04-2016 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 PP4_RS13765 7db44abb5d1fd711e1b6cc258158447e 309 TIGRFAM TIGR03215 ac_ald_DH_ac: acetaldehyde dehydrogenase (acetylating) 4 293 2.5E-140 T 22-04-2016 IPR003361 Acetaldehyde dehydrogenase GO:0008774|GO:0019439|GO:0055114 KEGG: 00360+1.2.1.10|KEGG: 00362+1.2.1.10|KEGG: 00620+1.2.1.10|KEGG: 00621+1.2.1.10|KEGG: 00622+1.2.1.10|KEGG: 00650+1.2.1.10|MetaCyc: PWY-5162|MetaCyc: PWY-5436|MetaCyc: PWY-5480|MetaCyc: PWY-6587|MetaCyc: PWY-7085|MetaCyc: PWY-7180 PP4_RS26460 56b95a47d549f46247289679589bacb3 380 Pfam PF00005 ABC transporter 39 180 1.7E-37 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS26460 56b95a47d549f46247289679589bacb3 380 SMART SM00382 47 235 4.5E-16 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS26460 56b95a47d549f46247289679589bacb3 380 SUPERFAMILY SSF52540 22 263 9.05E-87 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26460 56b95a47d549f46247289679589bacb3 380 TIGRFAM TIGR01187 potA: polyamine ABC transporter, ATP-binding protein 53 378 2.0E-128 T 22-04-2016 IPR005893 Spermidine/putrescine ABC transporter, ATP-binding subunit GO:0015417|GO:0015846|GO:0043190 PP4_RS26460 56b95a47d549f46247289679589bacb3 380 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS26460 56b95a47d549f46247289679589bacb3 380 Pfam PF08402 TOBE domain 300 378 1.0E-16 T 22-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 PP4_RS26460 56b95a47d549f46247289679589bacb3 380 Gene3D G3DSA:3.40.50.300 19 252 6.9E-81 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26460 56b95a47d549f46247289679589bacb3 380 SUPERFAMILY SSF50331 255 378 1.42E-15 T 22-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal PP4_RS26460 56b95a47d549f46247289679589bacb3 380 PANTHER PTHR24220:SF481 24 313 5.9E-189 T 22-04-2016 PP4_RS26460 56b95a47d549f46247289679589bacb3 380 PANTHER PTHR24220 24 313 5.9E-189 T 22-04-2016 PP4_RS18230 c34882d00fa7518de6ca2371d94a8e64 296 SUPERFAMILY SSF53850 95 296 1.81E-23 T 22-04-2016 PP4_RS18230 c34882d00fa7518de6ca2371d94a8e64 296 SUPERFAMILY SSF46785 9 92 1.36E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS18230 c34882d00fa7518de6ca2371d94a8e64 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 68 3.1E-17 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS18230 c34882d00fa7518de6ca2371d94a8e64 296 PANTHER PTHR30126 8 294 2.2E-79 T 22-04-2016 PP4_RS18230 c34882d00fa7518de6ca2371d94a8e64 296 Gene3D G3DSA:1.10.10.10 9 87 2.3E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS18230 c34882d00fa7518de6ca2371d94a8e64 296 Pfam PF03466 LysR substrate binding domain 96 295 8.0E-21 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS18230 c34882d00fa7518de6ca2371d94a8e64 296 PANTHER PTHR30126:SF16 8 294 2.2E-79 T 22-04-2016 PP4_RS18230 c34882d00fa7518de6ca2371d94a8e64 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 7.5E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS18230 c34882d00fa7518de6ca2371d94a8e64 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 7.5E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS18230 c34882d00fa7518de6ca2371d94a8e64 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 7.5E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS18230 c34882d00fa7518de6ca2371d94a8e64 296 Gene3D G3DSA:3.40.190.10 88 211 2.7E-14 T 22-04-2016 PP4_RS10745 89e9453d3fe930b41bf27711122d9731 290 PANTHER PTHR30346 1 286 8.3E-90 T 22-04-2016 PP4_RS10745 89e9453d3fe930b41bf27711122d9731 290 SUPERFAMILY SSF46785 1 85 1.32E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS10745 89e9453d3fe930b41bf27711122d9731 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 61 2.2E-20 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS10745 89e9453d3fe930b41bf27711122d9731 290 PANTHER PTHR30346:SF0 1 286 8.3E-90 T 22-04-2016 PP4_RS10745 89e9453d3fe930b41bf27711122d9731 290 Gene3D G3DSA:1.10.10.10 1 84 8.8E-26 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS10745 89e9453d3fe930b41bf27711122d9731 290 Pfam PF03466 LysR substrate binding domain 86 285 2.9E-35 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS10745 89e9453d3fe930b41bf27711122d9731 290 SUPERFAMILY SSF53850 86 285 7.97E-34 T 22-04-2016 PP4_RS10745 89e9453d3fe930b41bf27711122d9731 290 Gene3D G3DSA:3.40.190.10 87 172 1.1E-29 T 22-04-2016 PP4_RS10745 89e9453d3fe930b41bf27711122d9731 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 9.9E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS10745 89e9453d3fe930b41bf27711122d9731 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 9.9E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS10745 89e9453d3fe930b41bf27711122d9731 290 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 9.9E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS10745 89e9453d3fe930b41bf27711122d9731 290 Gene3D G3DSA:3.40.190.10 173 264 9.9E-37 T 22-04-2016 PP4_RS16755 621b79bba3dd534e7c4a5c2482828e81 815 Pfam PF00593 TonB dependent receptor 503 813 2.5E-31 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS16755 621b79bba3dd534e7c4a5c2482828e81 815 Gene3D G3DSA:2.170.130.10 48 171 2.3E-31 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS16755 621b79bba3dd534e7c4a5c2482828e81 815 PANTHER PTHR30069 7 815 2.4E-101 T 22-04-2016 PP4_RS16755 621b79bba3dd534e7c4a5c2482828e81 815 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 39 - T 22-04-2016 IPR010916 TonB box, conserved site PP4_RS16755 621b79bba3dd534e7c4a5c2482828e81 815 Pfam PF07715 TonB-dependent Receptor Plug Domain 48 169 2.7E-21 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS16755 621b79bba3dd534e7c4a5c2482828e81 815 PANTHER PTHR30069:SF4 7 815 2.4E-101 T 22-04-2016 PP4_RS16755 621b79bba3dd534e7c4a5c2482828e81 815 SUPERFAMILY SSF56935 24 230 3.83E-98 T 22-04-2016 PP4_RS16755 621b79bba3dd534e7c4a5c2482828e81 815 SUPERFAMILY SSF56935 569 815 3.83E-98 T 22-04-2016 PP4_RS16755 621b79bba3dd534e7c4a5c2482828e81 815 SUPERFAMILY SSF56935 263 531 3.83E-98 T 22-04-2016 PP4_RS16755 621b79bba3dd534e7c4a5c2482828e81 815 Gene3D G3DSA:2.40.170.20 172 815 9.3E-84 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS06520 ac0d3097ecc3e38061fd882f058bb469 414 Pfam PF16930 Putative porin 107 274 1.3E-33 T 22-04-2016 IPR032638 Putative bacterial porin PP4_RS06520 ac0d3097ecc3e38061fd882f058bb469 414 Pfam PF16930 Putative porin 313 414 1.1E-9 T 22-04-2016 IPR032638 Putative bacterial porin PP4_RS06520 ac0d3097ecc3e38061fd882f058bb469 414 SUPERFAMILY SSF56935 82 414 2.87E-9 T 22-04-2016 PP4_RS15815 6efeb81b4f9f51ccc47cb09351c248ec 516 PANTHER PTHR30047 12 508 7.2E-115 T 22-04-2016 PP4_RS15815 6efeb81b4f9f51ccc47cb09351c248ec 516 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 27 508 1.4E-138 T 22-04-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 PP4_RS00290 729a1e8550e7011be45c7d661eb70bb8 310 Pfam PF02911 Formyl transferase, C-terminal domain 203 298 3.7E-28 T 22-04-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PP4_RS00290 729a1e8550e7011be45c7d661eb70bb8 310 Gene3D G3DSA:3.10.25.10 206 301 7.5E-33 T 22-04-2016 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PP4_RS00290 729a1e8550e7011be45c7d661eb70bb8 310 SUPERFAMILY SSF50486 204 304 1.08E-32 T 22-04-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 PP4_RS00290 729a1e8550e7011be45c7d661eb70bb8 310 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 1 301 37.398 T 22-04-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PP4_RS00290 729a1e8550e7011be45c7d661eb70bb8 310 PANTHER PTHR11138 1 301 8.1E-118 T 22-04-2016 PP4_RS00290 729a1e8550e7011be45c7d661eb70bb8 310 Pfam PF00551 Formyl transferase 1 180 9.9E-47 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PP4_RS00290 729a1e8550e7011be45c7d661eb70bb8 310 SUPERFAMILY SSF53328 1 206 1.96E-68 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PP4_RS00290 729a1e8550e7011be45c7d661eb70bb8 310 Gene3D G3DSA:3.40.50.170 1 204 1.6E-75 T 22-04-2016 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PP4_RS00290 729a1e8550e7011be45c7d661eb70bb8 310 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site. 132 155 - T 22-04-2016 IPR001555 Phosphoribosylglycinamide formyltransferase, active site KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PP4_RS00290 729a1e8550e7011be45c7d661eb70bb8 310 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 1 303 9.7E-98 T 22-04-2016 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 PP4_RS10900 ee68f06de525da22a7a6b55887992933 127 Pfam PF14534 Domain of unknown function (DUF4440) 12 117 2.5E-12 T 22-04-2016 IPR027843 Domain of unknown function DUF4440 PP4_RS10900 ee68f06de525da22a7a6b55887992933 127 SUPERFAMILY SSF54427 8 126 2.77E-24 T 22-04-2016 IPR032710 NTF2-like domain PP4_RS10900 ee68f06de525da22a7a6b55887992933 127 Gene3D G3DSA:3.10.450.50 7 126 1.6E-25 T 22-04-2016 IPR032710 NTF2-like domain PP4_RS03350 51db3a7f4140d921efce4f06a5794578 259 SUPERFAMILY SSF51182 15 185 4.22E-18 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS03350 51db3a7f4140d921efce4f06a5794578 259 PANTHER PTHR11019:SF98 1 258 7.1E-91 T 22-04-2016 PP4_RS03350 51db3a7f4140d921efce4f06a5794578 259 Gene3D G3DSA:1.10.10.60 168 213 9.3E-11 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS03350 51db3a7f4140d921efce4f06a5794578 259 PANTHER PTHR11019 1 258 7.1E-91 T 22-04-2016 PP4_RS03350 51db3a7f4140d921efce4f06a5794578 259 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 211 254 - T 22-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PP4_RS03350 51db3a7f4140d921efce4f06a5794578 259 Gene3D G3DSA:2.60.120.10 17 91 1.6E-7 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS03350 51db3a7f4140d921efce4f06a5794578 259 SMART SM00342 176 258 1.5E-23 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS03350 51db3a7f4140d921efce4f06a5794578 259 Pfam PF12833 Helix-turn-helix domain 182 257 6.3E-21 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS03350 51db3a7f4140d921efce4f06a5794578 259 Gene3D G3DSA:1.10.10.60 214 257 4.2E-9 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS03350 51db3a7f4140d921efce4f06a5794578 259 SUPERFAMILY SSF46689 213 258 3.29E-7 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS03350 51db3a7f4140d921efce4f06a5794578 259 Pfam PF02311 AraC-like ligand binding domain 33 111 4.3E-5 T 22-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PP4_RS18280 9a4e9e433090940fc8a39969d137f607 519 PANTHER PTHR11780:SF0 1 510 1.4E-218 T 22-04-2016 PP4_RS18280 9a4e9e433090940fc8a39969d137f607 519 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 427 511 3.0E-27 T 22-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 PP4_RS18280 9a4e9e433090940fc8a39969d137f607 519 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 145 315 7.5E-46 T 22-04-2016 IPR011538 NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain PP4_RS18280 9a4e9e433090940fc8a39969d137f607 519 SUPERFAMILY SSF142019 96 334 1.96E-84 T 22-04-2016 PP4_RS18280 9a4e9e433090940fc8a39969d137f607 519 SUPERFAMILY SSF140490 422 510 1.96E-24 T 22-04-2016 PP4_RS18280 9a4e9e433090940fc8a39969d137f607 519 PANTHER PTHR11780 1 510 1.4E-218 T 22-04-2016 PP4_RS18280 9a4e9e433090940fc8a39969d137f607 519 ProSitePatterns PS00644 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 1. 263 278 - T 22-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 PP4_RS18280 9a4e9e433090940fc8a39969d137f607 519 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 438 449 - T 22-04-2016 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 PP4_RS18280 9a4e9e433090940fc8a39969d137f607 519 SMART SM00928 425 470 6.0E-14 T 22-04-2016 IPR019575 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain GO:0051539 PP4_RS18280 9a4e9e433090940fc8a39969d137f607 519 SUPERFAMILY SSF52833 7 78 4.47E-5 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS18280 9a4e9e433090940fc8a39969d137f607 519 SUPERFAMILY SSF142984 339 420 5.36E-21 T 22-04-2016 PP4_RS21110 e0bcce8c585adef2d8adfc2bddc802ef 270 PIRSF PIRSF018249 1 269 4.1E-93 T 22-04-2016 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted GO:0008168 PP4_RS21110 e0bcce8c585adef2d8adfc2bddc802ef 270 Gene3D G3DSA:3.40.50.150 65 189 5.2E-21 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS21110 e0bcce8c585adef2d8adfc2bddc802ef 270 SUPERFAMILY SSF53335 1 239 1.52E-42 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS21110 e0bcce8c585adef2d8adfc2bddc802ef 270 PANTHER PTHR10108:SF886 20 192 9.0E-51 T 22-04-2016 PP4_RS21110 e0bcce8c585adef2d8adfc2bddc802ef 270 Pfam PF13649 Methyltransferase domain 86 168 7.6E-12 T 22-04-2016 PP4_RS21110 e0bcce8c585adef2d8adfc2bddc802ef 270 PANTHER PTHR10108 20 192 9.0E-51 T 22-04-2016 PP4_RS00925 ba6568d16bf672bf6da06fd2bf082012 81 Pfam PF06146 Phosphate-starvation-inducible E 7 65 7.8E-9 T 22-04-2016 IPR020948 Phosphate-starvation-induced PsiE-like PP4_RS00925 ba6568d16bf672bf6da06fd2bf082012 81 TIGRFAM TIGR02647 DNA: TIGR02647 family protein 1 77 9.4E-42 T 22-04-2016 IPR013468 Conserved hypothetical protein CHP02647 PP4_RS01290 93ee526490280c03fa24342a9016eaef 323 Pfam PF09084 NMT1/THI5 like 58 242 1.1E-21 T 22-04-2016 IPR015168 SsuA/THI5-like PP4_RS01290 93ee526490280c03fa24342a9016eaef 323 Gene3D G3DSA:3.40.190.10 110 227 7.2E-20 T 22-04-2016 PP4_RS01290 93ee526490280c03fa24342a9016eaef 323 SMART SM00062 26 241 7.1E-4 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS01290 93ee526490280c03fa24342a9016eaef 323 PANTHER PTHR30024:SF17 7 321 6.7E-78 T 22-04-2016 PP4_RS01290 93ee526490280c03fa24342a9016eaef 323 PANTHER PTHR30024 7 321 6.7E-78 T 22-04-2016 PP4_RS01290 93ee526490280c03fa24342a9016eaef 323 TIGRFAM TIGR01729 taurine_ABC_bnd: taurine ABC transporter, periplasmic binding protein 28 320 3.9E-132 T 22-04-2016 IPR010068 Periplasmic binding protein TauA GO:0015734|GO:0042597 PP4_RS01290 93ee526490280c03fa24342a9016eaef 323 SUPERFAMILY SSF53850 27 244 1.71E-42 T 22-04-2016 PP4_RS20575 a620d231696e472ca7ab5151ca86431c 421 Gene3D G3DSA:2.40.160.60 24 421 8.7E-124 T 22-04-2016 PP4_RS20575 a620d231696e472ca7ab5151ca86431c 421 PANTHER PTHR35093 1 421 2.0E-130 T 22-04-2016 PP4_RS20575 a620d231696e472ca7ab5151ca86431c 421 PANTHER PTHR35093:SF2 1 421 2.0E-130 T 22-04-2016 PP4_RS20575 a620d231696e472ca7ab5151ca86431c 421 SUPERFAMILY SSF56935 24 421 6.71E-99 T 22-04-2016 PP4_RS20575 a620d231696e472ca7ab5151ca86431c 421 Pfam PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) 15 421 1.7E-114 T 22-04-2016 IPR005017 Outer membrane protein transport protein (OMPP1/FadL/TodX) PP4_RS14350 f61eb8cec70d9292ea159f53c7f65d5b 228 PANTHER PTHR11019 3 65 9.5E-35 T 22-04-2016 PP4_RS14350 f61eb8cec70d9292ea159f53c7f65d5b 228 PANTHER PTHR11019 83 223 9.5E-35 T 22-04-2016 PP4_RS14350 f61eb8cec70d9292ea159f53c7f65d5b 228 Gene3D G3DSA:3.40.50.880 1 226 6.1E-77 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS14350 f61eb8cec70d9292ea159f53c7f65d5b 228 Pfam PF01965 DJ-1/PfpI family 28 223 9.6E-18 T 22-04-2016 IPR002818 DJ-1/PfpI PP4_RS14350 f61eb8cec70d9292ea159f53c7f65d5b 228 SUPERFAMILY SSF52317 1 225 4.58E-68 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS14350 f61eb8cec70d9292ea159f53c7f65d5b 228 PANTHER PTHR11019:SF97 3 65 9.5E-35 T 22-04-2016 PP4_RS14350 f61eb8cec70d9292ea159f53c7f65d5b 228 PANTHER PTHR11019:SF97 83 223 9.5E-35 T 22-04-2016 PP4_RS23155 14cca303555654e40a1485669db1bf7e 617 Pfam PF13387 Domain of unknown function (DUF4105) 118 290 3.4E-61 T 22-04-2016 IPR025178 Domain of unknown function DUF4105 PP4_RS10340 ca9cb5d56a46801ded7398e2888a9e8d 336 PANTHER PTHR11019:SF52 144 332 4.6E-26 T 22-04-2016 PP4_RS10340 ca9cb5d56a46801ded7398e2888a9e8d 336 SMART SM00342 247 330 2.7E-22 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS10340 ca9cb5d56a46801ded7398e2888a9e8d 336 Pfam PF12833 Helix-turn-helix domain 254 332 2.6E-16 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS10340 ca9cb5d56a46801ded7398e2888a9e8d 336 PANTHER PTHR11019 144 332 4.6E-26 T 22-04-2016 PP4_RS10340 ca9cb5d56a46801ded7398e2888a9e8d 336 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 26 204 3.5E-27 T 22-04-2016 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal PP4_RS10340 ca9cb5d56a46801ded7398e2888a9e8d 336 Gene3D G3DSA:1.10.10.60 283 332 7.6E-17 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS10340 ca9cb5d56a46801ded7398e2888a9e8d 336 SUPERFAMILY SSF46689 283 332 1.16E-12 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS10340 ca9cb5d56a46801ded7398e2888a9e8d 336 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 314 330 2.1E-6 T 22-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PP4_RS10340 ca9cb5d56a46801ded7398e2888a9e8d 336 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 299 314 2.1E-6 T 22-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PP4_RS25120 eef6e759e77cc82d07f0261cbc8d5d0b 265 Pfam PF00149 Calcineurin-like phosphoesterase 10 196 7.7E-10 T 22-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 PP4_RS25120 eef6e759e77cc82d07f0261cbc8d5d0b 265 PANTHER PTHR12905:SF7 9 29 9.3E-70 T 22-04-2016 PP4_RS25120 eef6e759e77cc82d07f0261cbc8d5d0b 265 PANTHER PTHR12905:SF7 45 265 9.3E-70 T 22-04-2016 PP4_RS25120 eef6e759e77cc82d07f0261cbc8d5d0b 265 PANTHER PTHR12905 9 29 9.3E-70 T 22-04-2016 PP4_RS25120 eef6e759e77cc82d07f0261cbc8d5d0b 265 PANTHER PTHR12905 45 265 9.3E-70 T 22-04-2016 PP4_RS25120 eef6e759e77cc82d07f0261cbc8d5d0b 265 Gene3D G3DSA:3.60.21.10 10 245 1.8E-31 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS25120 eef6e759e77cc82d07f0261cbc8d5d0b 265 SUPERFAMILY SSF56300 8 252 5.41E-50 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS25120 eef6e759e77cc82d07f0261cbc8d5d0b 265 ProDom PD587589 PHOSPHODIESTERASE ICC METALLOPHOSPHOESTERASE CYCLIC REGULATOR LACZ AMP HYDROLASE 3'5'-CYCLIC-NUCLEOTIDE EXPRESSION 196 250 9.0E-24 T 22-04-2016 IPR013622 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, C-terminal KEGG: 00230+3.1.4.53 PP4_RS25120 eef6e759e77cc82d07f0261cbc8d5d0b 265 Hamap MF_00905 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA [cpdA]. 9 251 37.912 T 22-04-2016 IPR026575 3,5-cyclic adenosine monophosphate phosphodiesterase CpdA GO:0004115 KEGG: 00230+3.1.4.53 PP4_RS00555 abe3f4be9670f46b4bd4697825955b89 318 SUPERFAMILY SSF53807 35 315 2.21E-71 T 22-04-2016 PP4_RS00555 abe3f4be9670f46b4bd4697825955b89 318 Gene3D G3DSA:3.40.50.1980 207 316 3.9E-20 T 22-04-2016 PP4_RS00555 abe3f4be9670f46b4bd4697825955b89 318 PANTHER PTHR30477 20 290 3.4E-68 T 22-04-2016 PP4_RS00555 abe3f4be9670f46b4bd4697825955b89 318 PANTHER PTHR30477:SF1 20 290 3.4E-68 T 22-04-2016 PP4_RS00555 abe3f4be9670f46b4bd4697825955b89 318 Gene3D G3DSA:3.40.50.1980 28 204 5.6E-46 T 22-04-2016 PP4_RS00555 abe3f4be9670f46b4bd4697825955b89 318 Pfam PF01297 Zinc-uptake complex component A periplasmic 38 305 7.9E-55 T 22-04-2016 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 PP4_RS03355 409c99e224f07c7c0b724439e641c835 647 PANTHER PTHR32089:SF64 136 647 4.0E-137 T 22-04-2016 PP4_RS03355 409c99e224f07c7c0b724439e641c835 647 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 512 541 2.3E-5 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS03355 409c99e224f07c7c0b724439e641c835 647 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 291 311 2.3E-5 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS03355 409c99e224f07c7c0b724439e641c835 647 SUPERFAMILY SSF58104 338 647 3.01E-75 T 22-04-2016 PP4_RS03355 409c99e224f07c7c0b724439e641c835 647 Pfam PF02743 Cache domain 46 277 6.2E-28 T 22-04-2016 IPR033479 Double Cache domain 1 PP4_RS03355 409c99e224f07c7c0b724439e641c835 647 SMART SM00283 385 646 1.4E-72 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS03355 409c99e224f07c7c0b724439e641c835 647 Pfam PF00672 HAMP domain 296 366 2.9E-10 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS03355 409c99e224f07c7c0b724439e641c835 647 PANTHER PTHR32089 136 647 4.0E-137 T 22-04-2016 PP4_RS03355 409c99e224f07c7c0b724439e641c835 647 Gene3D G3DSA:1.10.287.950 400 614 2.4E-57 T 22-04-2016 PP4_RS03355 409c99e224f07c7c0b724439e641c835 647 Gene3D G3DSA:3.30.450.20 159 294 4.6E-24 T 22-04-2016 PP4_RS03355 409c99e224f07c7c0b724439e641c835 647 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 443 645 8.7E-44 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS03355 409c99e224f07c7c0b724439e641c835 647 SMART SM00304 316 370 3.3E-9 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS03355 409c99e224f07c7c0b724439e641c835 647 SUPERFAMILY SSF103190 105 203 1.33E-8 T 22-04-2016 IPR029151 Periplasmic sensor domain-like PP4_RS26545 ab6e085035e68203c45afbe3c006066e 333 PANTHER PTHR30006 7 328 1.5E-154 T 22-04-2016 PP4_RS26545 ab6e085035e68203c45afbe3c006066e 333 Gene3D G3DSA:3.40.190.10 7 121 3.1E-32 T 22-04-2016 PP4_RS26545 ab6e085035e68203c45afbe3c006066e 333 Gene3D G3DSA:3.40.190.10 265 305 3.1E-32 T 22-04-2016 PP4_RS26545 ab6e085035e68203c45afbe3c006066e 333 Gene3D G3DSA:3.40.190.10 125 264 9.4E-54 T 22-04-2016 PP4_RS26545 ab6e085035e68203c45afbe3c006066e 333 SUPERFAMILY SSF53850 25 329 3.07E-80 T 22-04-2016 PP4_RS26545 ab6e085035e68203c45afbe3c006066e 333 Pfam PF13416 Bacterial extracellular solute-binding protein 41 306 1.5E-22 T 22-04-2016 PP4_RS26545 ab6e085035e68203c45afbe3c006066e 333 PANTHER PTHR30006:SF4 7 328 1.5E-154 T 22-04-2016 PP4_RS26545 ab6e085035e68203c45afbe3c006066e 333 PIRSF PIRSF002825 3 333 9.3E-105 T 22-04-2016 IPR026045 Ferric binding protein PP4_RS07975 8eb1ca40d2222680a9c4c8290171854f 429 Pfam PF00285 Citrate synthase, C-terminal domain 46 411 2.8E-133 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 PP4_RS07975 8eb1ca40d2222680a9c4c8290171854f 429 SUPERFAMILY SSF48256 6 428 9.42E-166 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 PP4_RS07975 8eb1ca40d2222680a9c4c8290171854f 429 Gene3D G3DSA:1.10.580.10 52 280 3.3E-100 T 22-04-2016 IPR016142 Citrate synthase-like, large alpha subdomain UniPathway: UPA00223 PP4_RS07975 8eb1ca40d2222680a9c4c8290171854f 429 Gene3D G3DSA:1.10.230.10 281 374 6.6E-40 T 22-04-2016 IPR016143 Citrate synthase-like, small alpha subdomain PP4_RS07975 8eb1ca40d2222680a9c4c8290171854f 429 ProSitePatterns PS00480 Citrate synthase signature. 303 315 - T 22-04-2016 IPR019810 Citrate synthase active site GO:0006099|GO:0046912 UniPathway: UPA00223 PP4_RS07975 8eb1ca40d2222680a9c4c8290171854f 429 PIRSF PIRSF001369 37 429 4.7E-177 T 22-04-2016 IPR024176 Citrate synthase, bacterial-type UniPathway: UPA00223 PP4_RS07975 8eb1ca40d2222680a9c4c8290171854f 429 TIGRFAM TIGR01798 cit_synth_I: citrate (Si)-synthase 16 422 4.4E-241 T 22-04-2016 IPR010953 Citrate synthase, type I GO:0004108|GO:0005737 UniPathway: UPA00223 PP4_RS07975 8eb1ca40d2222680a9c4c8290171854f 429 PANTHER PTHR11739 39 428 3.6E-199 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 PP4_RS07975 8eb1ca40d2222680a9c4c8290171854f 429 PRINTS PR00143 Citrate synthase signature 219 234 3.2E-56 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 PP4_RS07975 8eb1ca40d2222680a9c4c8290171854f 429 PRINTS PR00143 Citrate synthase signature 165 178 3.2E-56 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 PP4_RS07975 8eb1ca40d2222680a9c4c8290171854f 429 PRINTS PR00143 Citrate synthase signature 380 394 3.2E-56 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 PP4_RS07975 8eb1ca40d2222680a9c4c8290171854f 429 PRINTS PR00143 Citrate synthase signature 296 316 3.2E-56 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 PP4_RS07975 8eb1ca40d2222680a9c4c8290171854f 429 PRINTS PR00143 Citrate synthase signature 241 269 3.2E-56 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 PP4_RS07975 8eb1ca40d2222680a9c4c8290171854f 429 PRINTS PR00143 Citrate synthase signature 360 376 3.2E-56 T 22-04-2016 IPR002020 Citrate synthase GO:0046912 PP4_RS05310 1da6858c6d57748773d2c2e769a1530f 188 SUPERFAMILY SSF51283 3 187 6.15E-53 T 22-04-2016 IPR029054 dUTPase-like PP4_RS05310 1da6858c6d57748773d2c2e769a1530f 188 Hamap MF_00146 Deoxycytidine triphosphate deaminase [dcd]. 1 188 29.011 T 22-04-2016 IPR011962 Deoxycytidine triphosphate deaminase GO:0006229|GO:0008829 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187|UniPathway: UPA00610 PP4_RS05310 1da6858c6d57748773d2c2e769a1530f 188 PANTHER PTHR11241 1 187 6.4E-82 T 22-04-2016 PP4_RS05310 1da6858c6d57748773d2c2e769a1530f 188 Pfam PF00692 dUTPase 80 184 4.2E-8 T 22-04-2016 IPR008180 Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase GO:0016787|GO:0046080 PP4_RS05310 1da6858c6d57748773d2c2e769a1530f 188 PANTHER PTHR11241:SF1 1 187 6.4E-82 T 22-04-2016 PP4_RS05310 1da6858c6d57748773d2c2e769a1530f 188 TIGRFAM TIGR02274 dCTP_deam: deoxycytidine triphosphate deaminase 4 187 5.9E-50 T 22-04-2016 IPR011962 Deoxycytidine triphosphate deaminase GO:0006229|GO:0008829 KEGG: 00240+3.5.4.13|MetaCyc: PWY-7187|UniPathway: UPA00610 PP4_RS05310 1da6858c6d57748773d2c2e769a1530f 188 Gene3D G3DSA:2.70.40.10 3 187 2.6E-69 T 22-04-2016 IPR029054 dUTPase-like PP4_RS12575 831776c766b8c6f2daefddae3c9a65bf 109 Pfam PF07978 NIPSNAP 8 101 1.5E-25 T 22-04-2016 IPR012577 NIPSNAP PP4_RS12575 831776c766b8c6f2daefddae3c9a65bf 109 SUPERFAMILY SSF54909 4 101 7.87E-28 T 22-04-2016 IPR011008 Dimeric alpha-beta barrel PP4_RS12575 831776c766b8c6f2daefddae3c9a65bf 109 Gene3D G3DSA:3.30.70.900 3 101 2.6E-22 T 22-04-2016 PP4_RS12980 afb92b8884146b451e5e32e2c381ef6c 405 SUPERFAMILY SSF55073 145 288 2.67E-6 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS12980 afb92b8884146b451e5e32e2c381ef6c 405 Pfam PF13556 PucR C-terminal helix-turn-helix domain 337 394 2.3E-16 T 22-04-2016 IPR025736 PucR C-terminal helix-turn-helix domain PP4_RS12980 afb92b8884146b451e5e32e2c381ef6c 405 Pfam PF07905 Purine catabolism regulatory protein-like family 7 126 3.5E-27 T 22-04-2016 IPR012914 Purine catabolism PurC-like domain PP4_RS12980 afb92b8884146b451e5e32e2c381ef6c 405 PANTHER PTHR33744 134 405 9.2E-31 T 22-04-2016 PP4_RS12980 afb92b8884146b451e5e32e2c381ef6c 405 Gene3D G3DSA:1.10.10.60 339 373 3.7E-5 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS12980 afb92b8884146b451e5e32e2c381ef6c 405 Gene3D G3DSA:3.30.70.270 172 288 9.8E-4 T 22-04-2016 PP4_RS03815 902ab3fa32e7fe8f96ce0ed669c2f2b9 156 PANTHER PTHR37819 10 149 1.0E-35 T 22-04-2016 PP4_RS03815 902ab3fa32e7fe8f96ce0ed669c2f2b9 156 Pfam PF06146 Phosphate-starvation-inducible E 60 126 1.7E-17 T 22-04-2016 IPR020948 Phosphate-starvation-induced PsiE-like PP4_RS03815 902ab3fa32e7fe8f96ce0ed669c2f2b9 156 PANTHER PTHR37819:SF1 10 149 1.0E-35 T 22-04-2016 PP4_RS03815 902ab3fa32e7fe8f96ce0ed669c2f2b9 156 PIRSF PIRSF029598 2 145 3.9E-40 T 22-04-2016 IPR009315 Phosphate-starvation-induced PsiE GO:0016021|GO:0016036 PP4_RS21670 d94617612878722048c55ef9fee0489f 484 Gene3D G3DSA:1.10.287.130 272 325 4.0E-12 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS21670 d94617612878722048c55ef9fee0489f 484 SUPERFAMILY SSF47384 266 324 3.92E-11 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS21670 d94617612878722048c55ef9fee0489f 484 Pfam PF00672 HAMP domain 212 277 8.6E-10 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS21670 d94617612878722048c55ef9fee0489f 484 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 379 481 9.8E-18 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS21670 d94617612878722048c55ef9fee0489f 484 Gene3D G3DSA:3.30.565.10 326 481 1.3E-28 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS21670 d94617612878722048c55ef9fee0489f 484 SMART SM00304 229 281 2.0E-5 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS21670 d94617612878722048c55ef9fee0489f 484 SUPERFAMILY SSF55874 341 481 4.06E-29 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS21670 d94617612878722048c55ef9fee0489f 484 PANTHER PTHR24423 223 484 2.9E-40 T 22-04-2016 PP4_RS21670 d94617612878722048c55ef9fee0489f 484 PANTHER PTHR24423 5 17 2.9E-40 T 22-04-2016 PP4_RS21670 d94617612878722048c55ef9fee0489f 484 SMART SM00387 378 483 1.1E-25 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS21670 d94617612878722048c55ef9fee0489f 484 Pfam PF00512 His Kinase A (phospho-acceptor) domain 283 329 1.5E-7 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS21670 d94617612878722048c55ef9fee0489f 484 SMART SM00388 282 340 7.8E-5 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS21670 d94617612878722048c55ef9fee0489f 484 PRINTS PR00344 Bacterial sensor protein C-terminal signature 443 461 1.2E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS21670 d94617612878722048c55ef9fee0489f 484 PRINTS PR00344 Bacterial sensor protein C-terminal signature 412 426 1.2E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS21670 d94617612878722048c55ef9fee0489f 484 PRINTS PR00344 Bacterial sensor protein C-terminal signature 430 440 1.2E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS21735 0cfbdc3fc56dc6eb690210b72f14e4f5 336 PANTHER PTHR11405:SF44 298 336 1.4E-199 T 22-04-2016 PP4_RS21735 0cfbdc3fc56dc6eb690210b72f14e4f5 336 PANTHER PTHR11405:SF44 1 276 1.4E-199 T 22-04-2016 PP4_RS21735 0cfbdc3fc56dc6eb690210b72f14e4f5 336 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 156 331 2.5E-54 T 22-04-2016 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 PP4_RS21735 0cfbdc3fc56dc6eb690210b72f14e4f5 336 PANTHER PTHR11405 298 336 1.4E-199 T 22-04-2016 PP4_RS21735 0cfbdc3fc56dc6eb690210b72f14e4f5 336 PANTHER PTHR11405 1 276 1.4E-199 T 22-04-2016 PP4_RS21735 0cfbdc3fc56dc6eb690210b72f14e4f5 336 SUPERFAMILY SSF53671 4 334 3.4E-98 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PP4_RS21735 0cfbdc3fc56dc6eb690210b72f14e4f5 336 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 53 60 - T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PP4_RS21735 0cfbdc3fc56dc6eb690210b72f14e4f5 336 Gene3D G3DSA:3.40.50.1370 3 144 1.3E-54 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PP4_RS21735 0cfbdc3fc56dc6eb690210b72f14e4f5 336 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 7 334 80.531 T 22-04-2016 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 PP4_RS21735 0cfbdc3fc56dc6eb690210b72f14e4f5 336 PRINTS PR00102 Ornithine carbamoyltransferase signature 312 323 2.6E-30 T 22-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 PP4_RS21735 0cfbdc3fc56dc6eb690210b72f14e4f5 336 PRINTS PR00102 Ornithine carbamoyltransferase signature 51 65 2.6E-30 T 22-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 PP4_RS21735 0cfbdc3fc56dc6eb690210b72f14e4f5 336 PRINTS PR00102 Ornithine carbamoyltransferase signature 229 239 2.6E-30 T 22-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 PP4_RS21735 0cfbdc3fc56dc6eb690210b72f14e4f5 336 PRINTS PR00102 Ornithine carbamoyltransferase signature 124 138 2.6E-30 T 22-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 PP4_RS21735 0cfbdc3fc56dc6eb690210b72f14e4f5 336 PRINTS PR00102 Ornithine carbamoyltransferase signature 84 97 2.6E-30 T 22-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 PP4_RS21735 0cfbdc3fc56dc6eb690210b72f14e4f5 336 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 8 148 2.4E-45 T 22-04-2016 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 PP4_RS21735 0cfbdc3fc56dc6eb690210b72f14e4f5 336 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 8 333 1.5E-134 T 22-04-2016 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 PP4_RS21735 0cfbdc3fc56dc6eb690210b72f14e4f5 336 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 298 321 8.2E-25 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PP4_RS21735 0cfbdc3fc56dc6eb690210b72f14e4f5 336 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 267 276 8.2E-25 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PP4_RS21735 0cfbdc3fc56dc6eb690210b72f14e4f5 336 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 53 72 8.2E-25 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PP4_RS21735 0cfbdc3fc56dc6eb690210b72f14e4f5 336 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 135 146 8.2E-25 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PP4_RS21735 0cfbdc3fc56dc6eb690210b72f14e4f5 336 Gene3D G3DSA:3.40.50.1370 145 320 6.5E-72 T 22-04-2016 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 PP4_RS11710 49f4d06f74f8e31377659939ba3c2dc4 326 PANTHER PTHR30024:SF11 1 320 3.7E-81 T 22-04-2016 PP4_RS11710 49f4d06f74f8e31377659939ba3c2dc4 326 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 39 319 1.8E-56 T 22-04-2016 IPR010067 Aliphatic sulfonates-binding protein GO:0006790|GO:0006810|GO:0016020 PP4_RS11710 49f4d06f74f8e31377659939ba3c2dc4 326 SUPERFAMILY SSF53850 37 273 1.87E-44 T 22-04-2016 PP4_RS11710 49f4d06f74f8e31377659939ba3c2dc4 326 SMART SM00062 38 255 5.6E-15 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS11710 49f4d06f74f8e31377659939ba3c2dc4 326 PANTHER PTHR30024 1 320 3.7E-81 T 22-04-2016 PP4_RS11710 49f4d06f74f8e31377659939ba3c2dc4 326 Gene3D G3DSA:3.40.190.10 118 242 3.9E-23 T 22-04-2016 PP4_RS11710 49f4d06f74f8e31377659939ba3c2dc4 326 Pfam PF09084 NMT1/THI5 like 65 258 3.0E-14 T 22-04-2016 IPR015168 SsuA/THI5-like PP4_RS09715 67cf0d7e854ebc71fcf26e0f8bb571e0 105 Pfam PF11720 Peptidase inhibitor I78 family 41 105 2.5E-16 T 22-04-2016 IPR021719 Proteinase inhibitor I78 PP4_RS09715 67cf0d7e854ebc71fcf26e0f8bb571e0 105 PANTHER PTHR39600 34 105 7.4E-12 T 22-04-2016 PP4_RS22310 679b6005bcaa4e574a472b779f45fbd7 107 SUPERFAMILY SSF89360 1 96 6.28E-32 T 22-04-2016 IPR000361 FeS cluster biogenesis PP4_RS22310 679b6005bcaa4e574a472b779f45fbd7 107 PANTHER PTHR10072:SF48 1 107 2.3E-49 T 22-04-2016 IPR031108 FeS assembly protein IscA-like GO:0005198|GO:0016226|GO:0051536 PP4_RS22310 679b6005bcaa4e574a472b779f45fbd7 107 TIGRFAM TIGR02011 IscA: iron-sulfur cluster assembly protein IscA 3 107 3.2E-53 T 22-04-2016 IPR011302 Iron-binding protein IscA, proteobacteria GO:0005506|GO:0016226|GO:0051536 PP4_RS22310 679b6005bcaa4e574a472b779f45fbd7 107 ProSitePatterns PS01152 Hypothetical hesB/yadR/yfhF family signature. 88 105 - T 22-04-2016 IPR017870 FeS cluster insertion, C-terminal, conserved site PP4_RS22310 679b6005bcaa4e574a472b779f45fbd7 107 Pfam PF01521 Iron-sulphur cluster biosynthesis 1 103 3.7E-25 T 22-04-2016 IPR000361 FeS cluster biogenesis PP4_RS22310 679b6005bcaa4e574a472b779f45fbd7 107 PANTHER PTHR10072 1 107 2.3E-49 T 22-04-2016 PP4_RS22310 679b6005bcaa4e574a472b779f45fbd7 107 TIGRFAM TIGR00049 TIGR00049: iron-sulfur cluster assembly accessory protein 3 107 7.2E-36 T 22-04-2016 IPR016092 FeS cluster insertion protein GO:0005198|GO:0016226|GO:0051536 PP4_RS22310 679b6005bcaa4e574a472b779f45fbd7 107 Gene3D G3DSA:2.60.300.12 2 96 7.2E-34 T 22-04-2016 IPR000361 FeS cluster biogenesis PP4_RS14935 b85b3be8ec3a0b5bcc11916fb286a2fb 226 Gene3D G3DSA:3.90.70.10 56 180 4.3E-9 T 22-04-2016 PP4_RS14935 b85b3be8ec3a0b5bcc11916fb286a2fb 226 Pfam PF03412 Peptidase C39 family 47 179 3.7E-21 T 22-04-2016 IPR005074 Peptidase C39, bacteriocin processing GO:0005524|GO:0006508|GO:0008233|GO:0016021 PP4_RS22110 93ebbe43d19495e7e05ca750d296b053 308 PANTHER PTHR30465:SF10 16 306 3.3E-128 T 22-04-2016 PP4_RS22110 93ebbe43d19495e7e05ca750d296b053 308 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 23 75 5.7E-14 T 22-04-2016 IPR025966 Oligopeptide transport permease C-like, N-terminal domain PP4_RS22110 93ebbe43d19495e7e05ca750d296b053 308 SUPERFAMILY SSF161098 99 286 3.79E-27 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS22110 93ebbe43d19495e7e05ca750d296b053 308 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 122 305 7.4E-29 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS22110 93ebbe43d19495e7e05ca750d296b053 308 Gene3D G3DSA:1.10.3720.10 97 302 2.4E-25 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS22110 93ebbe43d19495e7e05ca750d296b053 308 PANTHER PTHR30465 16 306 3.3E-128 T 22-04-2016 PP4_RS26585 415a0d80988e6bac0239f66d75ef97d9 202 PANTHER PTHR23407:SF1 1 198 4.4E-51 T 22-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase PP4_RS26585 415a0d80988e6bac0239f66d75ef97d9 202 Pfam PF01812 5-formyltetrahydrofolate cyclo-ligase family 10 190 1.9E-36 T 22-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase PP4_RS26585 415a0d80988e6bac0239f66d75ef97d9 202 Gene3D G3DSA:3.40.50.10420 9 198 5.1E-51 T 22-04-2016 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain PP4_RS26585 415a0d80988e6bac0239f66d75ef97d9 202 PIRSF PIRSF006806 7 196 2.1E-32 T 22-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase PP4_RS26585 415a0d80988e6bac0239f66d75ef97d9 202 PANTHER PTHR23407 1 198 4.4E-51 T 22-04-2016 PP4_RS26585 415a0d80988e6bac0239f66d75ef97d9 202 TIGRFAM TIGR02727 MTHFS_bact: 5-formyltetrahydrofolate cyclo-ligase 11 192 2.3E-43 T 22-04-2016 IPR002698 5-formyltetrahydrofolate cyclo-ligase PP4_RS26585 415a0d80988e6bac0239f66d75ef97d9 202 SUPERFAMILY SSF100950 8 199 6.28E-49 T 22-04-2016 PP4_RS15350 a53ba5b7b2a2471ddfdc5ea2a8e4c962 147 TIGRFAM TIGR02801 tolR: protein TolR 12 145 2.9E-39 T 22-04-2016 IPR014168 Biopolymer transport, TolR GO:0015031|GO:0016021 PP4_RS15350 a53ba5b7b2a2471ddfdc5ea2a8e4c962 147 PANTHER PTHR30558:SF7 7 147 1.2E-44 T 22-04-2016 PP4_RS15350 a53ba5b7b2a2471ddfdc5ea2a8e4c962 147 Pfam PF02472 Biopolymer transport protein ExbD/TolR 11 145 2.0E-25 T 22-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 PP4_RS15350 a53ba5b7b2a2471ddfdc5ea2a8e4c962 147 PANTHER PTHR30558 7 147 1.2E-44 T 22-04-2016 PP4_RS08130 c389f2a293d73577cc7e5f8dac94fc36 350 PANTHER PTHR21716:SF20 3 349 4.7E-116 T 22-04-2016 PP4_RS08130 c389f2a293d73577cc7e5f8dac94fc36 350 Pfam PF01594 Domain of unknown function DUF20 11 338 6.9E-46 T 22-04-2016 IPR002549 Transmembrane protein TqsA-like PP4_RS08130 c389f2a293d73577cc7e5f8dac94fc36 350 PANTHER PTHR21716 3 349 4.7E-116 T 22-04-2016 IPR002549 Transmembrane protein TqsA-like PP4_RS06490 2510b2b06cefb943676602f8fa042e9b 565 Pfam PF00501 AMP-binding enzyme 31 461 7.9E-112 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PP4_RS06490 2510b2b06cefb943676602f8fa042e9b 565 Gene3D G3DSA:2.30.38.10 381 452 1.5E-28 T 22-04-2016 PP4_RS06490 2510b2b06cefb943676602f8fa042e9b 565 Gene3D G3DSA:3.30.300.30 458 558 5.2E-30 T 22-04-2016 PP4_RS06490 2510b2b06cefb943676602f8fa042e9b 565 Pfam PF13193 AMP-binding enzyme C-terminal domain 470 545 5.4E-17 T 22-04-2016 IPR025110 AMP-binding enzyme C-terminal domain PP4_RS06490 2510b2b06cefb943676602f8fa042e9b 565 Gene3D G3DSA:3.40.50.980 219 380 9.1E-42 T 22-04-2016 PP4_RS06490 2510b2b06cefb943676602f8fa042e9b 565 SUPERFAMILY SSF56801 18 557 2.49E-151 T 22-04-2016 PP4_RS06490 2510b2b06cefb943676602f8fa042e9b 565 PANTHER PTHR24096 177 554 1.1E-181 T 22-04-2016 PP4_RS06490 2510b2b06cefb943676602f8fa042e9b 565 PANTHER PTHR24096 25 161 1.1E-181 T 22-04-2016 PP4_RS06490 2510b2b06cefb943676602f8fa042e9b 565 ProSitePatterns PS00455 Putative AMP-binding domain signature. 212 223 - T 22-04-2016 IPR020845 AMP-binding, conserved site PP4_RS06490 2510b2b06cefb943676602f8fa042e9b 565 Gene3D G3DSA:3.40.50.980 25 145 1.1E-35 T 22-04-2016 PP4_RS06490 2510b2b06cefb943676602f8fa042e9b 565 Gene3D G3DSA:3.40.50.980 185 218 1.1E-35 T 22-04-2016 PP4_RS09300 fb0d1f9a3ee1f53910cfb5a041359295 257 Gene3D G3DSA:1.20.1290.10 162 231 8.4E-12 T 22-04-2016 IPR029032 AhpD-like PP4_RS09300 fb0d1f9a3ee1f53910cfb5a041359295 257 Gene3D G3DSA:1.20.1290.10 29 120 5.1E-9 T 22-04-2016 IPR029032 AhpD-like PP4_RS09300 fb0d1f9a3ee1f53910cfb5a041359295 257 SUPERFAMILY SSF69118 24 236 1.7E-39 T 22-04-2016 IPR029032 AhpD-like PP4_RS09300 fb0d1f9a3ee1f53910cfb5a041359295 257 Pfam PF02627 Carboxymuconolactone decarboxylase family 167 230 1.2E-8 T 22-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 PP4_RS05915 ec8e8614b903de81e1ec92a036e7b63e 150 PANTHER PTHR30558 1 150 4.0E-53 T 22-04-2016 PP4_RS05915 ec8e8614b903de81e1ec92a036e7b63e 150 TIGRFAM TIGR02801 tolR: protein TolR 11 148 9.0E-43 T 22-04-2016 IPR014168 Biopolymer transport, TolR GO:0015031|GO:0016021 PP4_RS05915 ec8e8614b903de81e1ec92a036e7b63e 150 PANTHER PTHR30558:SF7 1 150 4.0E-53 T 22-04-2016 PP4_RS05915 ec8e8614b903de81e1ec92a036e7b63e 150 Pfam PF02472 Biopolymer transport protein ExbD/TolR 8 148 2.1E-25 T 22-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 PP4_RS20070 3d4fc0f31935068f95b07f9e10533f8a 329 Pfam PF01370 NAD dependent epimerase/dehydratase family 12 234 1.7E-30 T 22-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 PP4_RS20070 3d4fc0f31935068f95b07f9e10533f8a 329 Gene3D G3DSA:3.40.50.720 12 319 1.5E-56 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS20070 3d4fc0f31935068f95b07f9e10533f8a 329 PANTHER PTHR10366 11 327 1.6E-99 T 22-04-2016 PP4_RS20070 3d4fc0f31935068f95b07f9e10533f8a 329 PANTHER PTHR10366:SF329 11 327 1.6E-99 T 22-04-2016 PP4_RS20070 3d4fc0f31935068f95b07f9e10533f8a 329 SUPERFAMILY SSF51735 12 323 1.82E-65 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS05235 d62f07c5f6b4b9683e92082a0735f1ca 348 ProSitePatterns PS00483 Dihydroorotase signature 2. 246 257 - T 22-04-2016 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 PP4_RS05235 d62f07c5f6b4b9683e92082a0735f1ca 348 TIGRFAM TIGR00856 pyrC_dimer: dihydroorotase, homodimeric type 5 343 4.7E-140 T 22-04-2016 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 PP4_RS05235 d62f07c5f6b4b9683e92082a0735f1ca 348 PIRSF PIRSF001237 1 346 3.9E-141 T 22-04-2016 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 PP4_RS05235 d62f07c5f6b4b9683e92082a0735f1ca 348 Hamap MF_00219 Dihydroorotase [pyrC]. 3 344 44.173 T 22-04-2016 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 PP4_RS05235 d62f07c5f6b4b9683e92082a0735f1ca 348 PANTHER PTHR11647:SF59 1 317 2.0E-163 T 22-04-2016 IPR004721 Dihydroorotase homodimeric type GO:0004151|GO:0019856 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 PP4_RS05235 d62f07c5f6b4b9683e92082a0735f1ca 348 Gene3D G3DSA:3.20.20.140 2 343 2.5E-133 T 22-04-2016 PP4_RS05235 d62f07c5f6b4b9683e92082a0735f1ca 348 PANTHER PTHR11647 1 317 2.0E-163 T 22-04-2016 PP4_RS05235 d62f07c5f6b4b9683e92082a0735f1ca 348 ProSitePatterns PS00482 Dihydroorotase signature 1. 12 20 - T 22-04-2016 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 PP4_RS05235 d62f07c5f6b4b9683e92082a0735f1ca 348 Pfam PF01979 Amidohydrolase family 12 310 3.7E-15 T 22-04-2016 IPR006680 Amidohydrolase-related GO:0016787 PP4_RS05235 d62f07c5f6b4b9683e92082a0735f1ca 348 SUPERFAMILY SSF51556 3 343 4.92E-146 T 22-04-2016 IPR032466 Metal-dependent hydrolase PP4_RS11975 c5a9d4c03fb0059d09c3dc92d66e640d 99 ProDom PD015450 MALONATE DECARBOXYLASE SUBUNIT DELTA ACYL CARRIER DECARBOXYLASE PLASMID DIRECT SEQUENCING 1 94 6.0E-47 T 22-04-2016 IPR009662 Malonate decarboxylase delta subunit PP4_RS11975 c5a9d4c03fb0059d09c3dc92d66e640d 99 Pfam PF06857 Malonate decarboxylase delta subunit (MdcD) 17 95 2.4E-24 T 22-04-2016 IPR023439 Malonate decarboxylase/citrate lyase acyl carrier protein PP4_RS11975 c5a9d4c03fb0059d09c3dc92d66e640d 99 Hamap MF_00710 Malonate decarboxylase acyl carrier protein [mdcC]. 1 99 51.519 T 22-04-2016 IPR009662 Malonate decarboxylase delta subunit PP4_RS11975 c5a9d4c03fb0059d09c3dc92d66e640d 99 TIGRFAM TIGR03130 malonate_delta: malonate decarboxylase acyl carrier protein 2 95 1.9E-33 T 22-04-2016 IPR009662 Malonate decarboxylase delta subunit PP4_RS08045 e0bb7b6b8a93f445a5933848b1c103ac 160 Gene3D G3DSA:3.10.129.10 21 145 5.4E-17 T 22-04-2016 IPR029069 HotDog domain PP4_RS08045 e0bb7b6b8a93f445a5933848b1c103ac 160 SUPERFAMILY SSF54637 17 145 5.27E-21 T 22-04-2016 IPR029069 HotDog domain PP4_RS08045 e0bb7b6b8a93f445a5933848b1c103ac 160 Pfam PF03061 Thioesterase superfamily 62 133 7.8E-12 T 22-04-2016 IPR006683 Thioesterase domain PP4_RS08045 e0bb7b6b8a93f445a5933848b1c103ac 160 PANTHER PTHR12418 18 159 4.6E-54 T 22-04-2016 PP4_RS08045 e0bb7b6b8a93f445a5933848b1c103ac 160 PANTHER PTHR12418:SF18 18 159 4.6E-54 T 22-04-2016 PP4_RS05865 83fb3a62834b3a7bbd1f0d978f52e6d0 157 SUPERFAMILY SSF47240 5 155 5.55E-47 T 22-04-2016 IPR009078 Ferritin-like superfamily PP4_RS05865 83fb3a62834b3a7bbd1f0d978f52e6d0 157 ProSitePatterns PS00818 Dps protein family signature 1. 37 53 - T 22-04-2016 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 PP4_RS05865 83fb3a62834b3a7bbd1f0d978f52e6d0 157 PANTHER PTHR30295:SF6 5 156 1.3E-68 T 22-04-2016 PP4_RS05865 83fb3a62834b3a7bbd1f0d978f52e6d0 157 Pfam PF00210 Ferritin-like domain 17 155 7.7E-26 T 22-04-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 PP4_RS05865 83fb3a62834b3a7bbd1f0d978f52e6d0 157 PIRSF PIRSF005900 1 157 2.1E-46 T 22-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 PP4_RS05865 83fb3a62834b3a7bbd1f0d978f52e6d0 157 Gene3D G3DSA:1.20.1260.10 2 155 1.3E-65 T 22-04-2016 IPR012347 Ferritin-related PP4_RS05865 83fb3a62834b3a7bbd1f0d978f52e6d0 157 ProSitePatterns PS00819 Dps protein family signature 2. 63 77 - T 22-04-2016 IPR023188 DNA-binding protein Dps, conserved site GO:0016722|GO:0055114 PP4_RS05865 83fb3a62834b3a7bbd1f0d978f52e6d0 157 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 132 150 5.5E-12 T 22-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 PP4_RS05865 83fb3a62834b3a7bbd1f0d978f52e6d0 157 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 61 77 5.5E-12 T 22-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 PP4_RS05865 83fb3a62834b3a7bbd1f0d978f52e6d0 157 PRINTS PR01346 Helicobacter neutrophil-activating protein A family signature 37 53 5.5E-12 T 22-04-2016 IPR002177 DNA-binding protein Dps GO:0006950|GO:0055114 PP4_RS05865 83fb3a62834b3a7bbd1f0d978f52e6d0 157 PANTHER PTHR30295 5 156 1.3E-68 T 22-04-2016 PP4_RS12490 dbf20d93904610cf770e48af9ed80d87 618 PANTHER PTHR32305:SF7 13 610 2.8E-122 T 22-04-2016 PP4_RS12490 dbf20d93904610cf770e48af9ed80d87 618 TIGRFAM TIGR01646 vgr_GE: Rhs element Vgr protein 32 517 1.5E-135 T 22-04-2016 IPR006533 Type VI secretion system, RhsGE-associated Vgr protein PP4_RS12490 dbf20d93904610cf770e48af9ed80d87 618 TIGRFAM TIGR03361 VI_Rhs_Vgr: type VI secretion system Vgr family protein 24 535 8.5E-186 T 22-04-2016 IPR017847 Type VI secretion system, RhsGE-associated Vgr family subset PP4_RS12490 dbf20d93904610cf770e48af9ed80d87 618 Pfam PF06715 Gp5 C-terminal repeat (3 copies) 525 547 1.5E-5 T 22-04-2016 IPR010609 Gp5, C-terminal PP4_RS12490 dbf20d93904610cf770e48af9ed80d87 618 SUPERFAMILY SSF69279 25 195 4.68E-52 T 22-04-2016 PP4_RS12490 dbf20d93904610cf770e48af9ed80d87 618 SUPERFAMILY SSF69255 376 464 4.58E-32 T 22-04-2016 PP4_RS12490 dbf20d93904610cf770e48af9ed80d87 618 Gene3D G3DSA:2.40.50.230 382 464 2.8E-36 T 22-04-2016 IPR006531 Gp5 N-terminal PP4_RS12490 dbf20d93904610cf770e48af9ed80d87 618 SUPERFAMILY SSF69279 203 376 3.4E-31 T 22-04-2016 PP4_RS12490 dbf20d93904610cf770e48af9ed80d87 618 PANTHER PTHR32305 13 610 2.8E-122 T 22-04-2016 PP4_RS12490 dbf20d93904610cf770e48af9ed80d87 618 SUPERFAMILY SSF69349 454 603 5.81E-35 T 22-04-2016 PP4_RS12490 dbf20d93904610cf770e48af9ed80d87 618 Pfam PF05954 Phage late control gene D protein (GPD) 38 346 5.6E-94 T 22-04-2016 PP4_RS12490 dbf20d93904610cf770e48af9ed80d87 618 Gene3D G3DSA:3.55.50.10 107 198 7.7E-30 T 22-04-2016 PP4_RS05065 83e40bd2b302e75af9cfdeae083eb33a 682 PANTHER PTHR30069 26 462 3.3E-249 T 22-04-2016 PP4_RS05065 83e40bd2b302e75af9cfdeae083eb33a 682 Pfam PF07715 TonB-dependent Receptor Plug Domain 40 144 1.6E-18 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS05065 83e40bd2b302e75af9cfdeae083eb33a 682 Gene3D G3DSA:2.170.130.10 19 151 2.5E-27 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS05065 83e40bd2b302e75af9cfdeae083eb33a 682 Pfam PF00593 TonB dependent receptor 417 680 1.0E-28 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS05065 83e40bd2b302e75af9cfdeae083eb33a 682 PANTHER PTHR30069:SF13 26 462 3.3E-249 T 22-04-2016 PP4_RS05065 83e40bd2b302e75af9cfdeae083eb33a 682 SUPERFAMILY SSF56935 38 500 1.13E-98 T 22-04-2016 PP4_RS05065 83e40bd2b302e75af9cfdeae083eb33a 682 SUPERFAMILY SSF56935 527 682 1.13E-98 T 22-04-2016 PP4_RS05065 83e40bd2b302e75af9cfdeae083eb33a 682 Gene3D G3DSA:2.40.170.20 161 682 3.2E-72 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS02640 4007e753f155d7db35ebc4f9cafa6c58 479 Pfam PF06628 Catalase-related immune-responsive 414 474 1.4E-21 T 22-04-2016 IPR010582 Catalase immune-responsive domain KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS02640 4007e753f155d7db35ebc4f9cafa6c58 479 SUPERFAMILY SSF56634 3 478 1.31E-217 T 22-04-2016 IPR020835 Catalase-like domain GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS02640 4007e753f155d7db35ebc4f9cafa6c58 479 ProSitePatterns PS00438 Catalase proximal active site signature. 42 58 - T 22-04-2016 IPR024708 Catalase active site GO:0004096 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS02640 4007e753f155d7db35ebc4f9cafa6c58 479 Pfam PF00199 Catalase 6 386 3.9E-195 T 22-04-2016 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS02640 4007e753f155d7db35ebc4f9cafa6c58 479 PRINTS PR00067 Catalase signature 82 100 7.2E-75 T 22-04-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS02640 4007e753f155d7db35ebc4f9cafa6c58 479 PRINTS PR00067 Catalase signature 319 345 7.2E-75 T 22-04-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS02640 4007e753f155d7db35ebc4f9cafa6c58 479 PRINTS PR00067 Catalase signature 19 42 7.2E-75 T 22-04-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS02640 4007e753f155d7db35ebc4f9cafa6c58 479 PRINTS PR00067 Catalase signature 103 120 7.2E-75 T 22-04-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS02640 4007e753f155d7db35ebc4f9cafa6c58 479 PRINTS PR00067 Catalase signature 122 140 7.2E-75 T 22-04-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS02640 4007e753f155d7db35ebc4f9cafa6c58 479 PRINTS PR00067 Catalase signature 287 314 7.2E-75 T 22-04-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS02640 4007e753f155d7db35ebc4f9cafa6c58 479 SMART SM01060 6 389 1.6E-291 T 22-04-2016 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS02640 4007e753f155d7db35ebc4f9cafa6c58 479 ProSitePatterns PS00437 Catalase proximal heme-ligand signature. 332 340 - T 22-04-2016 IPR002226 Catalase haem-binding site GO:0020037 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS02640 4007e753f155d7db35ebc4f9cafa6c58 479 Gene3D G3DSA:2.40.180.10 3 356 2.3E-184 T 22-04-2016 IPR011614 Catalase core domain GO:0004096|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS02640 4007e753f155d7db35ebc4f9cafa6c58 479 PANTHER PTHR11465 2 476 0.0 T 22-04-2016 IPR018028 Catalase, mono-functional, haem-containing GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS02640 4007e753f155d7db35ebc4f9cafa6c58 479 PIRSF PIRSF038928 1 478 2.9E-229 T 22-04-2016 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 GO:0004096|GO:0006979|GO:0020037|GO:0055114 KEGG: 00380+1.11.1.6|KEGG: 00630+1.11.1.6 PP4_RS03680 08cbf808efbfea70e0b9947a9c63a69a 495 SUPERFAMILY SSF51730 1 286 1.96E-39 T 22-04-2016 IPR029041 FAD-linked oxidoreductase-like PP4_RS03680 08cbf808efbfea70e0b9947a9c63a69a 495 Gene3D G3DSA:3.20.20.220 4 288 2.6E-30 T 22-04-2016 IPR029041 FAD-linked oxidoreductase-like PP4_RS03680 08cbf808efbfea70e0b9947a9c63a69a 495 Pfam PF12225 Methylene-tetrahydrofolate reductase C terminal 377 459 1.5E-18 T 22-04-2016 IPR022026 Methylene-tetrahydrofolate reductase C-terminal PP4_RS03680 08cbf808efbfea70e0b9947a9c63a69a 495 Pfam PF02219 Methylenetetrahydrofolate reductase 5 233 1.3E-11 T 22-04-2016 IPR003171 Methylenetetrahydrofolate reductase GO:0004489|GO:0006555|GO:0055114 KEGG: 00670+1.5.1.20|KEGG: 00720+1.5.1.20|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00193 PP4_RS07570 d3520c89a76317a526c7552faf7b2a6e 117 Gene3D G3DSA:2.60.40.180 2 117 1.3E-37 T 22-04-2016 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily PP4_RS07570 d3520c89a76317a526c7552faf7b2a6e 117 PRINTS PR00189 Transthyretin signature 95 117 7.2E-9 T 22-04-2016 IPR000895 Transthyretin/hydroxyisourate hydrolase PP4_RS07570 d3520c89a76317a526c7552faf7b2a6e 117 PRINTS PR00189 Transthyretin signature 3 23 7.2E-9 T 22-04-2016 IPR000895 Transthyretin/hydroxyisourate hydrolase PP4_RS07570 d3520c89a76317a526c7552faf7b2a6e 117 Pfam PF00576 HIUase/Transthyretin family 4 116 1.8E-35 T 22-04-2016 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily PP4_RS07570 d3520c89a76317a526c7552faf7b2a6e 117 PANTHER PTHR10395 1 117 5.6E-44 T 22-04-2016 PP4_RS07570 d3520c89a76317a526c7552faf7b2a6e 117 TIGRFAM TIGR02962 hdxy_isourate: hydroxyisourate hydrolase 2 117 4.5E-40 T 22-04-2016 IPR014306 Hydroxyisourate hydrolase GO:0006144|GO:0033971 KEGG: 00230+3.5.2.17|MetaCyc: PWY-5691|MetaCyc: PWY-7394 PP4_RS07570 d3520c89a76317a526c7552faf7b2a6e 117 SUPERFAMILY SSF49472 1 117 1.18E-41 T 22-04-2016 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily PP4_RS07570 d3520c89a76317a526c7552faf7b2a6e 117 ProSitePatterns PS00769 Transthyretin signature 2. 100 112 - T 22-04-2016 IPR023419 Transthyretin, conserved site PP4_RS07570 d3520c89a76317a526c7552faf7b2a6e 117 SMART SM00095 4 116 0.0062 T 22-04-2016 IPR023416 Transthyretin/hydroxyisourate hydrolase, superfamily PP4_RS07570 d3520c89a76317a526c7552faf7b2a6e 117 PANTHER PTHR10395:SF7 1 117 5.6E-44 T 22-04-2016 PP4_RS07570 d3520c89a76317a526c7552faf7b2a6e 117 ProSitePatterns PS00768 Transthyretin signature 1. 7 22 - T 22-04-2016 IPR023418 Transthyretin, thyroxine binding site PP4_RS23260 1477232970323c02d86e7a0364431a1d 442 ProSitePatterns PS00018 EF-hand calcium-binding domain. 409 421 - T 22-04-2016 IPR018247 EF-Hand 1, calcium-binding site PP4_RS23260 1477232970323c02d86e7a0364431a1d 442 PANTHER PTHR30629:SF4 3 434 6.3E-124 T 22-04-2016 PP4_RS23260 1477232970323c02d86e7a0364431a1d 442 Pfam PF00589 Phage integrase family 216 391 2.5E-12 T 22-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 PP4_RS23260 1477232970323c02d86e7a0364431a1d 442 SUPERFAMILY SSF56349 105 397 6.18E-48 T 22-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 PP4_RS23260 1477232970323c02d86e7a0364431a1d 442 Gene3D G3DSA:1.10.443.10 212 391 9.6E-18 T 22-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 PP4_RS23260 1477232970323c02d86e7a0364431a1d 442 PANTHER PTHR30629 3 434 6.3E-124 T 22-04-2016 PP4_RS23260 1477232970323c02d86e7a0364431a1d 442 Gene3D G3DSA:1.10.150.130 105 198 5.1E-14 T 22-04-2016 IPR023109 Integrase/recombinase, N-terminal PP4_RS23260 1477232970323c02d86e7a0364431a1d 442 Pfam PF13356 Domain of unknown function (DUF4102) 8 93 1.8E-15 T 22-04-2016 IPR025166 Domain of unknown function DUF4102 PP4_RS05925 4c65edfbd383f9c6e1123e8f7fb8a5ce 423 Gene3D G3DSA:3.40.50.10070 15 139 1.1E-46 T 22-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 PP4_RS05925 4c65edfbd383f9c6e1123e8f7fb8a5ce 423 TIGRFAM TIGR02800 propeller_TolB: Tol-Pal system beta propeller repeat protein TolB 9 419 1.1E-159 T 22-04-2016 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 PP4_RS05925 4c65edfbd383f9c6e1123e8f7fb8a5ce 423 SUPERFAMILY SSF52964 19 149 6.54E-40 T 22-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 PP4_RS05925 4c65edfbd383f9c6e1123e8f7fb8a5ce 423 Gene3D G3DSA:2.130.10.10 140 420 5.4E-74 T 22-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 PP4_RS05925 4c65edfbd383f9c6e1123e8f7fb8a5ce 423 PANTHER PTHR11731:SF123 1 111 6.2E-106 T 22-04-2016 PP4_RS05925 4c65edfbd383f9c6e1123e8f7fb8a5ce 423 PANTHER PTHR11731:SF123 148 420 6.2E-106 T 22-04-2016 PP4_RS05925 4c65edfbd383f9c6e1123e8f7fb8a5ce 423 Pfam PF07676 WD40-like Beta Propeller Repeat 192 218 4.7E-6 T 22-04-2016 IPR011659 WD40-like Beta Propeller PP4_RS05925 4c65edfbd383f9c6e1123e8f7fb8a5ce 423 Pfam PF07676 WD40-like Beta Propeller Repeat 361 390 0.0059 T 22-04-2016 IPR011659 WD40-like Beta Propeller PP4_RS05925 4c65edfbd383f9c6e1123e8f7fb8a5ce 423 Pfam PF07676 WD40-like Beta Propeller Repeat 227 262 3.9E-13 T 22-04-2016 IPR011659 WD40-like Beta Propeller PP4_RS05925 4c65edfbd383f9c6e1123e8f7fb8a5ce 423 Pfam PF07676 WD40-like Beta Propeller Repeat 272 305 2.6E-13 T 22-04-2016 IPR011659 WD40-like Beta Propeller PP4_RS05925 4c65edfbd383f9c6e1123e8f7fb8a5ce 423 SUPERFAMILY SSF69304 144 420 1.02E-52 T 22-04-2016 PP4_RS05925 4c65edfbd383f9c6e1123e8f7fb8a5ce 423 Hamap MF_00671 Protein TolB [tolB]. 2 418 35.036 T 22-04-2016 IPR014167 Tol-Pal system beta propeller repeat-containing protein, TolB GO:0017038|GO:0042597 PP4_RS05925 4c65edfbd383f9c6e1123e8f7fb8a5ce 423 Pfam PF04052 TolB amino-terminal domain 15 117 6.0E-30 T 22-04-2016 IPR007195 TolB, N-terminal GO:0015031|GO:0042597 PP4_RS05925 4c65edfbd383f9c6e1123e8f7fb8a5ce 423 PANTHER PTHR11731 1 111 6.2E-106 T 22-04-2016 PP4_RS05925 4c65edfbd383f9c6e1123e8f7fb8a5ce 423 PANTHER PTHR11731 148 420 6.2E-106 T 22-04-2016 PP4_RS14875 05b39b90269d7739fcbe90da1069299d 400 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 3 310 5.3E-44 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS14875 05b39b90269d7739fcbe90da1069299d 400 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 269 291 5.1E-11 T 22-04-2016 PP4_RS14875 05b39b90269d7739fcbe90da1069299d 400 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 101 119 5.1E-11 T 22-04-2016 PP4_RS14875 05b39b90269d7739fcbe90da1069299d 400 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 5.1E-11 T 22-04-2016 PP4_RS14875 05b39b90269d7739fcbe90da1069299d 400 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 153 171 5.1E-11 T 22-04-2016 PP4_RS14875 05b39b90269d7739fcbe90da1069299d 400 Gene3D G3DSA:3.50.50.60 110 321 4.2E-29 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS14875 05b39b90269d7739fcbe90da1069299d 400 Gene3D G3DSA:3.50.50.60 1 109 5.0E-12 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS14875 05b39b90269d7739fcbe90da1069299d 400 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 1.0E-6 T 22-04-2016 PP4_RS14875 05b39b90269d7739fcbe90da1069299d 400 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 284 291 1.0E-6 T 22-04-2016 PP4_RS14875 05b39b90269d7739fcbe90da1069299d 400 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 153 178 1.0E-6 T 22-04-2016 PP4_RS14875 05b39b90269d7739fcbe90da1069299d 400 PANTHER PTHR22912 2 136 1.6E-16 T 22-04-2016 PP4_RS14875 05b39b90269d7739fcbe90da1069299d 400 PANTHER PTHR22912 152 319 1.6E-16 T 22-04-2016 PP4_RS14875 05b39b90269d7739fcbe90da1069299d 400 SUPERFAMILY SSF51905 206 326 3.29E-28 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS14875 05b39b90269d7739fcbe90da1069299d 400 SUPERFAMILY SSF51905 3 165 3.29E-28 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS14875 05b39b90269d7739fcbe90da1069299d 400 PANTHER PTHR22912:SF180 2 136 1.6E-16 T 22-04-2016 PP4_RS14875 05b39b90269d7739fcbe90da1069299d 400 PANTHER PTHR22912:SF180 152 319 1.6E-16 T 22-04-2016 PP4_RS22960 c012324a6aab940a7d4c5ccf00a98e99 398 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 15 286 1.5E-81 T 22-04-2016 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 PP4_RS22960 c012324a6aab940a7d4c5ccf00a98e99 398 Pfam PF00999 Sodium/hydrogen exchanger family 13 377 3.4E-70 T 22-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 PP4_RS22960 c012324a6aab940a7d4c5ccf00a98e99 398 PANTHER PTHR16254:SF6 1 385 1.5E-143 T 22-04-2016 PP4_RS22960 c012324a6aab940a7d4c5ccf00a98e99 398 PANTHER PTHR16254 1 385 1.5E-143 T 22-04-2016 PP4_RS12335 727c70386c86d80633510e1bec605543 377 PANTHER PTHR30386 6 376 1.2E-92 T 22-04-2016 PP4_RS12335 727c70386c86d80633510e1bec605543 377 Pfam PF13533 Biotin-lipoyl like 80 129 1.2E-6 T 22-04-2016 PP4_RS12335 727c70386c86d80633510e1bec605543 377 Pfam PF13437 HlyD family secretion protein 246 364 1.4E-14 T 22-04-2016 PP4_RS12335 727c70386c86d80633510e1bec605543 377 Gene3D G3DSA:2.40.50.100 243 276 1.3E-15 T 22-04-2016 PP4_RS12335 727c70386c86d80633510e1bec605543 377 Gene3D G3DSA:2.40.50.100 82 112 1.3E-15 T 22-04-2016 PP4_RS12335 727c70386c86d80633510e1bec605543 377 PANTHER PTHR30386:SF0 6 376 1.2E-92 T 22-04-2016 PP4_RS12335 727c70386c86d80633510e1bec605543 377 SUPERFAMILY SSF111369 222 324 2.22E-11 T 22-04-2016 PP4_RS12335 727c70386c86d80633510e1bec605543 377 SUPERFAMILY SSF111369 150 208 4.45E-5 T 22-04-2016 PP4_RS12335 727c70386c86d80633510e1bec605543 377 SUPERFAMILY SSF111369 82 155 3.14E-8 T 22-04-2016 PP4_RS04745 1016e3ab2d24006724c31955aa182455 484 PANTHER PTHR30203:SF15 4 484 6.9E-175 T 22-04-2016 PP4_RS04745 1016e3ab2d24006724c31955aa182455 484 PANTHER PTHR30203 4 484 6.9E-175 T 22-04-2016 PP4_RS04745 1016e3ab2d24006724c31955aa182455 484 Gene3D G3DSA:1.20.1600.10 143 314 2.0E-100 T 22-04-2016 PP4_RS04745 1016e3ab2d24006724c31955aa182455 484 Gene3D G3DSA:1.20.1600.10 53 91 2.0E-100 T 22-04-2016 PP4_RS04745 1016e3ab2d24006724c31955aa182455 484 Gene3D G3DSA:1.20.1600.10 352 466 2.0E-100 T 22-04-2016 PP4_RS04745 1016e3ab2d24006724c31955aa182455 484 Pfam PF02321 Outer membrane efflux protein 283 463 4.8E-28 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PP4_RS04745 1016e3ab2d24006724c31955aa182455 484 Pfam PF02321 Outer membrane efflux protein 65 255 2.5E-24 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PP4_RS04745 1016e3ab2d24006724c31955aa182455 484 SUPERFAMILY SSF56954 2 30 2.75E-116 T 22-04-2016 PP4_RS04745 1016e3ab2d24006724c31955aa182455 484 SUPERFAMILY SSF56954 56 467 2.75E-116 T 22-04-2016 PP4_RS04745 1016e3ab2d24006724c31955aa182455 484 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 10 465 2.4E-147 T 22-04-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 PP4_RS04745 1016e3ab2d24006724c31955aa182455 484 Gene3D G3DSA:2.20.200.10 315 350 4.4E-23 T 22-04-2016 PP4_RS04745 1016e3ab2d24006724c31955aa182455 484 Gene3D G3DSA:2.20.200.10 101 142 4.4E-23 T 22-04-2016 PP4_RS16245 f0202a8bac277b0151ee427dbe72cf04 275 SMART SM00346 15 106 1.9E-15 T 22-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 PP4_RS16245 f0202a8bac277b0151ee427dbe72cf04 275 Gene3D G3DSA:1.10.10.10 11 83 1.9E-15 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16245 f0202a8bac277b0151ee427dbe72cf04 275 Gene3D G3DSA:3.30.450.40 84 260 1.8E-37 T 22-04-2016 IPR029016 GAF domain-like PP4_RS16245 f0202a8bac277b0151ee427dbe72cf04 275 SUPERFAMILY SSF46785 15 86 1.07E-10 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16245 f0202a8bac277b0151ee427dbe72cf04 275 Pfam PF01614 Bacterial transcriptional regulator 155 256 2.0E-12 T 22-04-2016 IPR014757 Transcription regulator IclR, C-terminal PP4_RS16245 f0202a8bac277b0151ee427dbe72cf04 275 SUPERFAMILY SSF55781 81 261 4.9E-36 T 22-04-2016 IPR029016 GAF domain-like PP4_RS16245 f0202a8bac277b0151ee427dbe72cf04 275 PANTHER PTHR30136:SF3 8 272 7.3E-46 T 22-04-2016 PP4_RS16245 f0202a8bac277b0151ee427dbe72cf04 275 PANTHER PTHR30136 8 272 7.3E-46 T 22-04-2016 PP4_RS16245 f0202a8bac277b0151ee427dbe72cf04 275 Pfam PF09339 IclR helix-turn-helix domain 17 67 6.6E-14 T 22-04-2016 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 PP4_RS03705 37a33d7241a3e7b9738b685bf6d83859 403 Pfam PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase 3 81 1.7E-34 T 22-04-2016 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 PP4_RS03705 37a33d7241a3e7b9738b685bf6d83859 403 PANTHER PTHR37480 3 403 7.6E-243 T 22-04-2016 PP4_RS03705 37a33d7241a3e7b9738b685bf6d83859 403 Pfam PF12241 Trans-2-enoyl-CoA reductase catalytic region 83 320 1.6E-108 T 22-04-2016 IPR024910 Trans-2-enoyl-CoA reductase catalytic domain, putative KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 PP4_RS03705 37a33d7241a3e7b9738b685bf6d83859 403 Hamap MF_01838 Trans-2-enoyl-CoA reductase [NADH] [fabV]. 2 398 56.418 T 22-04-2016 IPR010758 Trans-2-enoyl-CoA reductase GO:0016491|GO:0055114 KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 PP4_RS03705 37a33d7241a3e7b9738b685bf6d83859 403 Pfam PF07055 Enoyl reductase FAD binding domain 329 392 1.1E-29 T 22-04-2016 IPR024906 Enoyl reductase FAD binding domain KEGG: 00061+1.3.1.9|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 PP4_RS03705 37a33d7241a3e7b9738b685bf6d83859 403 Gene3D G3DSA:3.40.50.720 43 146 7.3E-4 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS03705 37a33d7241a3e7b9738b685bf6d83859 403 Gene3D G3DSA:3.40.50.720 179 262 7.3E-4 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS18320 f3bd98ecc9a478fdd69f88f4f8992780 185 SUPERFAMILY SSF55729 4 164 1.15E-28 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS18320 f3bd98ecc9a478fdd69f88f4f8992780 185 PANTHER PTHR13256 7 177 2.3E-19 T 22-04-2016 PP4_RS18320 f3bd98ecc9a478fdd69f88f4f8992780 185 Gene3D G3DSA:3.40.630.30 3 177 5.5E-34 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS18320 f3bd98ecc9a478fdd69f88f4f8992780 185 Pfam PF13302 Acetyltransferase (GNAT) domain 11 151 2.8E-25 T 22-04-2016 IPR000182 GNAT domain GO:0008080 PP4_RS00425 02effe1ce58c32eed45148a7fc9d7ab2 216 PANTHER PTHR18901 1 213 7.2E-84 T 22-04-2016 PP4_RS00425 02effe1ce58c32eed45148a7fc9d7ab2 216 SUPERFAMILY SSF56784 3 212 6.3E-52 T 22-04-2016 IPR023214 HAD-like domain PP4_RS00425 02effe1ce58c32eed45148a7fc9d7ab2 216 Gene3D G3DSA:1.10.150.240 18 75 1.7E-25 T 22-04-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 PP4_RS00425 02effe1ce58c32eed45148a7fc9d7ab2 216 Gene3D G3DSA:3.40.50.1000 76 211 1.4E-39 T 22-04-2016 IPR023214 HAD-like domain PP4_RS00425 02effe1ce58c32eed45148a7fc9d7ab2 216 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 184 1.6E-28 T 22-04-2016 IPR023214 HAD-like domain PP4_RS00425 02effe1ce58c32eed45148a7fc9d7ab2 216 PANTHER PTHR18901:SF23 1 213 7.2E-84 T 22-04-2016 PP4_RS02200 d0ef9493b0a5c9f75fc6bf371e6502d3 267 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 7 262 57.473 T 22-04-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 PP4_RS02200 d0ef9493b0a5c9f75fc6bf371e6502d3 267 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 39 66 - T 22-04-2016 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 PP4_RS02200 d0ef9493b0a5c9f75fc6bf371e6502d3 267 PANTHER PTHR11727 1 264 3.3E-99 T 22-04-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm PP4_RS02200 d0ef9493b0a5c9f75fc6bf371e6502d3 267 Gene3D G3DSA:3.40.50.150 3 195 4.2E-71 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS02200 d0ef9493b0a5c9f75fc6bf371e6502d3 267 Gene3D G3DSA:1.10.8.100 199 263 4.6E-25 T 22-04-2016 IPR023165 rRNA adenine dimethylase-like PP4_RS02200 d0ef9493b0a5c9f75fc6bf371e6502d3 267 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 7 260 3.5E-83 T 22-04-2016 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 PP4_RS02200 d0ef9493b0a5c9f75fc6bf371e6502d3 267 SMART SM00650 23 195 2.7E-90 T 22-04-2016 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 PP4_RS02200 d0ef9493b0a5c9f75fc6bf371e6502d3 267 Pfam PF00398 Ribosomal RNA adenine dimethylase 7 261 5.9E-63 T 22-04-2016 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm PP4_RS02200 d0ef9493b0a5c9f75fc6bf371e6502d3 267 SUPERFAMILY SSF53335 6 263 4.26E-80 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS20680 6a51e0fac98caf41e10e0fcad52e3ca0 213 SUPERFAMILY SSF54001 74 203 4.25E-37 T 22-04-2016 PP4_RS20680 6a51e0fac98caf41e10e0fcad52e3ca0 213 Pfam PF00877 NlpC/P60 family 91 200 3.5E-28 T 22-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PP4_RS20680 6a51e0fac98caf41e10e0fcad52e3ca0 213 PANTHER PTHR21666 80 201 1.0E-33 T 22-04-2016 PP4_RS20680 6a51e0fac98caf41e10e0fcad52e3ca0 213 Gene3D G3DSA:3.90.1720.10 76 206 1.1E-41 T 22-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PP4_RS05055 e86214477b2245c52f0645ce0167b7b7 803 PANTHER PTHR32303 132 268 0.0 T 22-04-2016 PP4_RS05055 e86214477b2245c52f0645ce0167b7b7 803 PANTHER PTHR32303 293 526 0.0 T 22-04-2016 PP4_RS05055 e86214477b2245c52f0645ce0167b7b7 803 PANTHER PTHR32303 594 803 0.0 T 22-04-2016 PP4_RS05055 e86214477b2245c52f0645ce0167b7b7 803 PANTHER PTHR32303:SF4 132 268 0.0 T 22-04-2016 PP4_RS05055 e86214477b2245c52f0645ce0167b7b7 803 PANTHER PTHR32303:SF4 293 526 0.0 T 22-04-2016 PP4_RS05055 e86214477b2245c52f0645ce0167b7b7 803 PANTHER PTHR32303:SF4 594 803 0.0 T 22-04-2016 PP4_RS05055 e86214477b2245c52f0645ce0167b7b7 803 Pfam PF01011 PQQ enzyme repeat 675 710 2.3E-5 T 22-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat PP4_RS05055 e86214477b2245c52f0645ce0167b7b7 803 Pfam PF01011 PQQ enzyme repeat 736 767 5.7E-6 T 22-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat PP4_RS05055 e86214477b2245c52f0645ce0167b7b7 803 SUPERFAMILY SSF50998 165 540 2.62E-148 T 22-04-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily PP4_RS05055 e86214477b2245c52f0645ce0167b7b7 803 SUPERFAMILY SSF50998 575 801 2.62E-148 T 22-04-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily PP4_RS05055 e86214477b2245c52f0645ce0167b7b7 803 TIGRFAM TIGR03074 PQQ_membr_DH: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family 16 801 0.0 T 22-04-2016 IPR017511 PQQ-dependent membrane bound dehydrogenase, glucose/quinate/shikimate-related GO:0016021|GO:0016614|GO:0048038|GO:0055114 PP4_RS05055 e86214477b2245c52f0645ce0167b7b7 803 Gene3D G3DSA:2.140.10.10 586 802 5.1E-156 T 22-04-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain PP4_RS05055 e86214477b2245c52f0645ce0167b7b7 803 Gene3D G3DSA:2.140.10.10 161 552 5.1E-156 T 22-04-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain PP4_RS05055 e86214477b2245c52f0645ce0167b7b7 803 SMART SM00564 426 477 88.0 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS05055 e86214477b2245c52f0645ce0167b7b7 803 SMART SM00564 724 757 0.0022 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS05055 e86214477b2245c52f0645ce0167b7b7 803 SMART SM00564 223 254 8.6E-6 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS05055 e86214477b2245c52f0645ce0167b7b7 803 SMART SM00564 301 333 200.0 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS05055 e86214477b2245c52f0645ce0167b7b7 803 SMART SM00564 358 399 12.0 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS05055 e86214477b2245c52f0645ce0167b7b7 803 Pfam PF13360 PQQ-like domain 221 404 4.1E-6 T 22-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat PP4_RS26135 525f5d92fd6df0fe7e8997d67824fc28 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 112 134 5.8E-51 T 22-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 PP4_RS26135 525f5d92fd6df0fe7e8997d67824fc28 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 20 41 5.8E-51 T 22-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 PP4_RS26135 525f5d92fd6df0fe7e8997d67824fc28 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 85 101 5.8E-51 T 22-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 PP4_RS26135 525f5d92fd6df0fe7e8997d67824fc28 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 49 73 5.8E-51 T 22-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 PP4_RS26135 525f5d92fd6df0fe7e8997d67824fc28 159 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 2 20 5.8E-51 T 22-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 PP4_RS26135 525f5d92fd6df0fe7e8997d67824fc28 159 Pfam PF01467 Cytidylyltransferase-like 5 133 1.1E-23 T 22-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 PP4_RS26135 525f5d92fd6df0fe7e8997d67824fc28 159 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 4 156 4.6E-59 T 22-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 PP4_RS26135 525f5d92fd6df0fe7e8997d67824fc28 159 PANTHER PTHR21342:SF1 1 159 1.9E-82 T 22-04-2016 PP4_RS26135 525f5d92fd6df0fe7e8997d67824fc28 159 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 2 158 36.66 T 22-04-2016 IPR001980 Coenzyme A biosynthesis protein GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|UniPathway: UPA00241 PP4_RS26135 525f5d92fd6df0fe7e8997d67824fc28 159 PANTHER PTHR21342 1 159 1.9E-82 T 22-04-2016 PP4_RS26135 525f5d92fd6df0fe7e8997d67824fc28 159 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 11 73 4.0E-4 T 22-04-2016 PP4_RS26135 525f5d92fd6df0fe7e8997d67824fc28 159 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 3 63 1.6E-19 T 22-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 PP4_RS26135 525f5d92fd6df0fe7e8997d67824fc28 159 Gene3D G3DSA:3.40.50.620 1 157 1.2E-56 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS26135 525f5d92fd6df0fe7e8997d67824fc28 159 SUPERFAMILY SSF52374 1 156 5.9E-47 T 22-04-2016 PP4_RS27335 bc49d2e1bdb95ed79989cca715d6a41c 479 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 13 479 1.0E-113 T 22-04-2016 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 PP4_RS27335 bc49d2e1bdb95ed79989cca715d6a41c 479 Hamap MF_00190 Cardiolipin synthase A [clsA]. 2 479 47.94 T 22-04-2016 IPR030840 Cardiolipin synthase A GO:0008808|GO:0016780|GO:0032049 PP4_RS27335 bc49d2e1bdb95ed79989cca715d6a41c 479 SUPERFAMILY SSF56024 270 462 8.07E-48 T 22-04-2016 PP4_RS27335 bc49d2e1bdb95ed79989cca715d6a41c 479 SUPERFAMILY SSF56024 88 308 1.54E-52 T 22-04-2016 PP4_RS27335 bc49d2e1bdb95ed79989cca715d6a41c 479 PANTHER PTHR21248:SF9 18 479 5.9E-187 T 22-04-2016 PP4_RS27335 bc49d2e1bdb95ed79989cca715d6a41c 479 PANTHER PTHR21248 18 479 5.9E-187 T 22-04-2016 PP4_RS27335 bc49d2e1bdb95ed79989cca715d6a41c 479 SMART SM00155 218 245 2.0E-5 T 22-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 PP4_RS27335 bc49d2e1bdb95ed79989cca715d6a41c 479 SMART SM00155 392 419 5.6E-7 T 22-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 PP4_RS27335 bc49d2e1bdb95ed79989cca715d6a41c 479 Pfam PF13396 Phospholipase_D-nuclease N-terminal 19 59 1.9E-5 T 22-04-2016 IPR027379 Cardiolipin synthase N-terminal PP4_RS27335 bc49d2e1bdb95ed79989cca715d6a41c 479 Pfam PF13091 PLD-like domain 136 278 6.6E-10 T 22-04-2016 IPR025202 Phospholipase D-like domain PP4_RS27335 bc49d2e1bdb95ed79989cca715d6a41c 479 Pfam PF13091 PLD-like domain 320 443 2.2E-24 T 22-04-2016 IPR025202 Phospholipase D-like domain PP4_RS27335 bc49d2e1bdb95ed79989cca715d6a41c 479 Gene3D G3DSA:3.30.870.10 113 312 1.0E-47 T 22-04-2016 PP4_RS27335 bc49d2e1bdb95ed79989cca715d6a41c 479 Gene3D G3DSA:3.30.870.10 318 476 1.8E-36 T 22-04-2016 PP4_RS18390 4cab1bc994ba98a5e8803e5dec9b20cc 506 PANTHER PTHR30618 1 487 1.3E-266 T 22-04-2016 PP4_RS18390 4cab1bc994ba98a5e8803e5dec9b20cc 506 PANTHER PTHR30618:SF6 1 487 1.3E-266 T 22-04-2016 PP4_RS18390 4cab1bc994ba98a5e8803e5dec9b20cc 506 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 41 473 2.6E-82 T 22-04-2016 IPR001248 Purine-cytosine permease GO:0005215|GO:0016020|GO:0055085 PP4_RS26335 8fc68969b4cc9a2fc09c3b04de86fe25 189 SUPERFAMILY SSF52833 45 188 2.52E-14 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS05480 f59b19a4ba4d3bad2d2638fe788c9821 255 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 233 253 2.7E-11 T 22-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal PP4_RS05480 f59b19a4ba4d3bad2d2638fe788c9821 255 Pfam PF00005 ABC transporter 22 181 4.1E-35 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS05480 f59b19a4ba4d3bad2d2638fe788c9821 255 SMART SM00382 30 231 4.3E-11 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS05480 f59b19a4ba4d3bad2d2638fe788c9821 255 PANTHER PTHR24220 7 105 1.0E-127 T 22-04-2016 PP4_RS05480 f59b19a4ba4d3bad2d2638fe788c9821 255 PANTHER PTHR24220 121 254 1.0E-127 T 22-04-2016 PP4_RS05480 f59b19a4ba4d3bad2d2638fe788c9821 255 PANTHER PTHR24220:SF358 7 105 1.0E-127 T 22-04-2016 PP4_RS05480 f59b19a4ba4d3bad2d2638fe788c9821 255 PANTHER PTHR24220:SF358 121 254 1.0E-127 T 22-04-2016 PP4_RS05480 f59b19a4ba4d3bad2d2638fe788c9821 255 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS05480 f59b19a4ba4d3bad2d2638fe788c9821 255 Gene3D G3DSA:3.40.50.300 2 251 6.3E-70 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS05480 f59b19a4ba4d3bad2d2638fe788c9821 255 SUPERFAMILY SSF52540 5 253 2.09E-64 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS13435 c4e0e913cfaad4184550988b12fab23e 398 SUPERFAMILY SSF89796 6 398 3.4E-122 T 22-04-2016 IPR023606 CoA-transferase family III domain PP4_RS13435 c4e0e913cfaad4184550988b12fab23e 398 PANTHER PTHR24023 247 385 3.8E-20 T 22-04-2016 PP4_RS13435 c4e0e913cfaad4184550988b12fab23e 398 PANTHER PTHR24023 84 216 3.8E-20 T 22-04-2016 PP4_RS13435 c4e0e913cfaad4184550988b12fab23e 398 PANTHER PTHR24023:SF593 247 385 3.8E-20 T 22-04-2016 PP4_RS13435 c4e0e913cfaad4184550988b12fab23e 398 PANTHER PTHR24023:SF593 84 216 3.8E-20 T 22-04-2016 PP4_RS13435 c4e0e913cfaad4184550988b12fab23e 398 Gene3D G3DSA:3.30.1540.10 225 309 1.0E-22 T 22-04-2016 PP4_RS13435 c4e0e913cfaad4184550988b12fab23e 398 Gene3D G3DSA:3.40.50.10540 4 219 3.0E-96 T 22-04-2016 IPR023606 CoA-transferase family III domain PP4_RS13435 c4e0e913cfaad4184550988b12fab23e 398 Gene3D G3DSA:3.40.50.10540 310 398 3.0E-96 T 22-04-2016 IPR023606 CoA-transferase family III domain PP4_RS13435 c4e0e913cfaad4184550988b12fab23e 398 Pfam PF02515 CoA-transferase family III 8 374 1.4E-104 T 22-04-2016 IPR003673 CoA-transferase family III GO:0003824 PP4_RS00985 c224554d06ebaed9ae26c780755c5195 394 ProDom PD032367 ALGINATE REGULATORY ALGR3 ALGP TRANSCRIPTION TRANSCRIPTIONAL DNA-BINDING ACTIVATOR KINASES KINASE 1 123 7.0E-28 T 22-04-2016 PP4_RS11820 ed73411673a65a6117eff61ff0480119 125 SUPERFAMILY SSF54593 5 119 5.64E-19 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PP4_RS11820 ed73411673a65a6117eff61ff0480119 125 Gene3D G3DSA:3.10.180.10 1 118 7.3E-33 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PP4_RS13880 df72f64eaf32ba7f4a3b1627b343da44 293 SUPERFAMILY SSF46785 1 86 4.91E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS13880 df72f64eaf32ba7f4a3b1627b343da44 293 Gene3D G3DSA:1.10.10.10 1 86 2.7E-30 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS13880 df72f64eaf32ba7f4a3b1627b343da44 293 Pfam PF03466 LysR substrate binding domain 88 287 3.9E-43 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS13880 df72f64eaf32ba7f4a3b1627b343da44 293 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.1E-22 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS13880 df72f64eaf32ba7f4a3b1627b343da44 293 SUPERFAMILY SSF53850 90 288 1.21E-42 T 22-04-2016 PP4_RS13880 df72f64eaf32ba7f4a3b1627b343da44 293 PANTHER PTHR30419:SF4 1 285 5.2E-74 T 22-04-2016 PP4_RS13880 df72f64eaf32ba7f4a3b1627b343da44 293 Gene3D G3DSA:3.40.190.10 176 258 1.1E-17 T 22-04-2016 PP4_RS13880 df72f64eaf32ba7f4a3b1627b343da44 293 PANTHER PTHR30419 1 285 5.2E-74 T 22-04-2016 PP4_RS13880 df72f64eaf32ba7f4a3b1627b343da44 293 Gene3D G3DSA:3.40.190.10 89 175 1.9E-15 T 22-04-2016 PP4_RS13880 df72f64eaf32ba7f4a3b1627b343da44 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.0E-11 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS13880 df72f64eaf32ba7f4a3b1627b343da44 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.0E-11 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS13880 df72f64eaf32ba7f4a3b1627b343da44 293 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.0E-11 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS22485 92cbb12334e33be47ef8b4286cde3e42 110 Pfam PF03626 Prokaryotic Cytochrome C oxidase subunit IV 20 93 2.5E-19 T 22-04-2016 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes GO:0016021 PP4_RS22485 92cbb12334e33be47ef8b4286cde3e42 110 PANTHER PTHR36835 1 108 9.5E-38 T 22-04-2016 PP4_RS22485 92cbb12334e33be47ef8b4286cde3e42 110 TIGRFAM TIGR02847 CyoD: cytochrome o ubiquinol oxidase subunit IV 13 108 2.2E-37 T 22-04-2016 IPR014210 Cytochrome o ubiquinol oxidase subunit IV GO:0008827|GO:0015990|GO:0016021 PP4_RS19640 cf7fc5c73ba3f702bab6cef7f0e93150 224 Gene3D G3DSA:2.60.40.360 9 126 5.4E-39 T 22-04-2016 IPR008962 PapD-like PP4_RS19640 cf7fc5c73ba3f702bab6cef7f0e93150 224 PRINTS PR00969 Pili chaperone signature 107 122 3.3E-27 T 22-04-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PP4_RS19640 cf7fc5c73ba3f702bab6cef7f0e93150 224 PRINTS PR00969 Pili chaperone signature 146 161 3.3E-27 T 22-04-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PP4_RS19640 cf7fc5c73ba3f702bab6cef7f0e93150 224 PRINTS PR00969 Pili chaperone signature 9 18 3.3E-27 T 22-04-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PP4_RS19640 cf7fc5c73ba3f702bab6cef7f0e93150 224 PRINTS PR00969 Pili chaperone signature 55 76 3.3E-27 T 22-04-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PP4_RS19640 cf7fc5c73ba3f702bab6cef7f0e93150 224 PRINTS PR00969 Pili chaperone signature 83 100 3.3E-27 T 22-04-2016 IPR001829 Pili assembly chaperone, bacterial GO:0030288|GO:0043711|GO:0061077 PP4_RS19640 cf7fc5c73ba3f702bab6cef7f0e93150 224 SUPERFAMILY SSF49354 4 125 1.7E-37 T 22-04-2016 IPR008962 PapD-like PP4_RS19640 cf7fc5c73ba3f702bab6cef7f0e93150 224 SUPERFAMILY SSF49584 126 215 3.92E-16 T 22-04-2016 IPR016148 Pili assembly chaperone, C-terminal PP4_RS19640 cf7fc5c73ba3f702bab6cef7f0e93150 224 PANTHER PTHR30251 3 223 5.9E-58 T 22-04-2016 PP4_RS19640 cf7fc5c73ba3f702bab6cef7f0e93150 224 Gene3D G3DSA:2.60.40.1070 128 217 5.2E-19 T 22-04-2016 IPR016148 Pili assembly chaperone, C-terminal PP4_RS19640 cf7fc5c73ba3f702bab6cef7f0e93150 224 Pfam PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain 9 126 1.9E-35 T 22-04-2016 IPR016147 Pili assembly chaperone, N-terminal GO:0030288|GO:0071555 PP4_RS19640 cf7fc5c73ba3f702bab6cef7f0e93150 224 Pfam PF02753 Pili assembly chaperone PapD, C-terminal domain 151 214 8.4E-16 T 22-04-2016 IPR016148 Pili assembly chaperone, C-terminal PP4_RS19855 80bbdfb988462c8777f2bcccc675b3d8 110 Pfam PF06877 Regulator of ribonuclease activity B 8 103 6.8E-22 T 22-04-2016 IPR009671 Regulator of ribonuclease activity B domain PP4_RS19855 80bbdfb988462c8777f2bcccc675b3d8 110 Gene3D G3DSA:3.30.70.970 8 106 2.8E-7 T 22-04-2016 IPR009671 Regulator of ribonuclease activity B domain PP4_RS19855 80bbdfb988462c8777f2bcccc675b3d8 110 SUPERFAMILY SSF89946 5 106 1.03E-22 T 22-04-2016 IPR009671 Regulator of ribonuclease activity B domain PP4_RS13740 856c05b7b87d10df29dcc8bc0d8a2b95 531 PANTHER PTHR11895 1 529 7.8E-124 T 22-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PP4_RS13740 856c05b7b87d10df29dcc8bc0d8a2b95 531 SUPERFAMILY SSF75304 54 520 4.71E-114 T 22-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PP4_RS13740 856c05b7b87d10df29dcc8bc0d8a2b95 531 Gene3D G3DSA:3.90.1300.10 56 527 5.9E-110 T 22-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PP4_RS13740 856c05b7b87d10df29dcc8bc0d8a2b95 531 PANTHER PTHR11895:SF35 1 529 7.8E-124 T 22-04-2016 PP4_RS13740 856c05b7b87d10df29dcc8bc0d8a2b95 531 ProSitePatterns PS00571 Amidases signature. 207 238 - T 22-04-2016 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PP4_RS13740 856c05b7b87d10df29dcc8bc0d8a2b95 531 Pfam PF01425 Amidase 80 512 3.3E-92 T 22-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PP4_RS05080 3da9b052fd66fcdbe7094eec22295844 253 Gene3D G3DSA:2.40.30.10 9 126 7.2E-38 T 22-04-2016 PP4_RS05080 3da9b052fd66fcdbe7094eec22295844 253 PANTHER PTHR30157 1 247 4.3E-74 T 22-04-2016 PP4_RS05080 3da9b052fd66fcdbe7094eec22295844 253 Pfam PF04954 Siderophore-interacting protein 136 246 2.7E-30 T 22-04-2016 IPR007037 Siderophore-interacting protein PP4_RS05080 3da9b052fd66fcdbe7094eec22295844 253 SUPERFAMILY SSF63380 8 131 1.49E-11 T 22-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 PP4_RS05080 3da9b052fd66fcdbe7094eec22295844 253 Pfam PF08021 Siderophore-interacting FAD-binding domain 18 128 4.2E-37 T 22-04-2016 IPR013113 FAD-binding 9, siderophore-interacting PP4_RS05080 3da9b052fd66fcdbe7094eec22295844 253 Gene3D G3DSA:3.40.50.80 131 250 2.8E-35 T 22-04-2016 PP4_RS05080 3da9b052fd66fcdbe7094eec22295844 253 PANTHER PTHR30157:SF1 1 247 4.3E-74 T 22-04-2016 PP4_RS14010 69f4f59d6e419b8fdd1f94bc6a79d535 282 PANTHER PTHR38033 27 281 4.9E-43 T 22-04-2016 PP4_RS14010 69f4f59d6e419b8fdd1f94bc6a79d535 282 Pfam PF09850 Type VI secretion system protein DotU 61 263 2.5E-53 T 22-04-2016 IPR017732 Type IV / VI secretion system, DotU PP4_RS14010 69f4f59d6e419b8fdd1f94bc6a79d535 282 TIGRFAM TIGR03349 IV_VI_DotU: type IV/VI secretion system protein, DotU family 59 267 2.7E-61 T 22-04-2016 IPR017732 Type IV / VI secretion system, DotU PP4_RS14010 69f4f59d6e419b8fdd1f94bc6a79d535 282 PANTHER PTHR38033:SF1 27 281 4.9E-43 T 22-04-2016 PP4_RS01340 afcfbd4e2de16ad436276237e159b539 530 PANTHER PTHR38761 7 529 1.1E-262 T 22-04-2016 PP4_RS01340 afcfbd4e2de16ad436276237e159b539 530 TIGRFAM TIGR01434 glu_cys_ligase: glutamate--cysteine ligase 12 520 8.6E-231 T 22-04-2016 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255|UniPathway: UPA00142 PP4_RS01340 afcfbd4e2de16ad436276237e159b539 530 Pfam PF04262 Glutamate-cysteine ligase 21 384 8.2E-170 T 22-04-2016 IPR007370 Glutamate--cysteine ligase GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255|UniPathway: UPA00142 PP4_RS01340 afcfbd4e2de16ad436276237e159b539 530 SUPERFAMILY SSF55931 17 518 1.24E-197 T 22-04-2016 PP4_RS01340 afcfbd4e2de16ad436276237e159b539 530 Hamap MF_00578 Glutamate--cysteine ligase [gshA]. 1 530 234.443 T 22-04-2016 IPR006334 Glutamate--cysteine ligase, monofunctional GO:0004357|GO:0006750 KEGG: 00270+6.3.2.2|KEGG: 00480+6.3.2.2|MetaCyc: PWY-6840|MetaCyc: PWY-7255|UniPathway: UPA00142 PP4_RS02950 a06a6866d79aa560a7958bc00c4409be 145 Pfam PF09722 Protein of unknown function (DUF2384) 93 138 1.5E-8 T 22-04-2016 IPR024467 Domain of unknown function DUF2384 PP4_RS12325 a7a354e4deaf4207a404991dd2c0ba67 432 Pfam PF07690 Major Facilitator Superfamily 208 390 1.9E-16 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS12325 a7a354e4deaf4207a404991dd2c0ba67 432 PANTHER PTHR23521:SF2 4 415 2.5E-89 T 22-04-2016 PP4_RS12325 a7a354e4deaf4207a404991dd2c0ba67 432 PANTHER PTHR23521 4 415 2.5E-89 T 22-04-2016 PP4_RS12325 a7a354e4deaf4207a404991dd2c0ba67 432 Gene3D G3DSA:1.20.1250.20 206 380 3.9E-20 T 22-04-2016 PP4_RS12325 a7a354e4deaf4207a404991dd2c0ba67 432 SUPERFAMILY SSF103473 6 378 2.62E-38 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS12325 a7a354e4deaf4207a404991dd2c0ba67 432 Gene3D G3DSA:1.20.1250.20 11 182 2.3E-10 T 22-04-2016 PP4_RS06910 b3e96b50dee5de60dfa25e1811a703e0 108 SUPERFAMILY SSF47598 12 58 1.25E-14 T 22-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 PP4_RS06910 b3e96b50dee5de60dfa25e1811a703e0 108 Gene3D G3DSA:1.10.1220.10 11 67 3.6E-22 T 22-04-2016 IPR013321 Arc-type ribbon-helix-helix GO:0006355 PP4_RS06910 b3e96b50dee5de60dfa25e1811a703e0 108 Pfam PF03869 Arc-like DNA binding domain 11 60 2.0E-26 T 22-04-2016 IPR005569 Arc-like DNA binding domain GO:0003677 PP4_RS16765 482cdee09b3c315660e4c1daf8ff632d 251 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 74 244 1.6E-19 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS16765 482cdee09b3c315660e4c1daf8ff632d 251 SUPERFAMILY SSF161098 50 236 4.97E-27 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS16765 482cdee09b3c315660e4c1daf8ff632d 251 Gene3D G3DSA:1.10.3720.10 50 245 8.7E-21 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS16765 482cdee09b3c315660e4c1daf8ff632d 251 PANTHER PTHR30151 1 248 2.2E-56 T 22-04-2016 PP4_RS19275 5593aeb2b01e980f4e2244c6daa8e6f8 403 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 20 400 4.1E-140 T 22-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 PP4_RS19275 5593aeb2b01e980f4e2244c6daa8e6f8 403 Gene3D G3DSA:3.40.640.10 19 267 1.8E-89 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS19275 5593aeb2b01e980f4e2244c6daa8e6f8 403 Gene3D G3DSA:3.90.1150.10 268 402 5.4E-53 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS19275 5593aeb2b01e980f4e2244c6daa8e6f8 403 PIRSF PIRSF001434 8 403 2.9E-134 T 22-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 PP4_RS19275 5593aeb2b01e980f4e2244c6daa8e6f8 403 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 211 225 - T 22-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 PP4_RS19275 5593aeb2b01e980f4e2244c6daa8e6f8 403 SUPERFAMILY SSF53383 41 401 1.61E-120 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS19275 5593aeb2b01e980f4e2244c6daa8e6f8 403 PANTHER PTHR11808 1 403 5.7E-227 T 22-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 PP4_RS19275 5593aeb2b01e980f4e2244c6daa8e6f8 403 TIGRFAM TIGR01325 O_suc_HS_sulf: O-succinylhomoserine sulfhydrylase 20 400 4.7E-189 T 22-04-2016 IPR006234 O-succinylhomoserine sulfhydrylase GO:0071268 UniPathway: UPA00051 PP4_RS19275 5593aeb2b01e980f4e2244c6daa8e6f8 403 PANTHER PTHR11808:SF36 1 403 5.7E-227 T 22-04-2016 PP4_RS24930 d34b04165f5d04d5f46c8279f62043ec 76 Gene3D G3DSA:4.10.640.10 8 74 4.3E-31 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS24930 d34b04165f5d04d5f46c8279f62043ec 76 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 21 71 7.0E-23 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS24930 d34b04165f5d04d5f46c8279f62043ec 76 Pfam PF01084 Ribosomal protein S18 19 68 6.0E-24 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS24930 d34b04165f5d04d5f46c8279f62043ec 76 ProSitePatterns PS00057 Ribosomal protein S18 signature. 21 44 - T 22-04-2016 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS24930 d34b04165f5d04d5f46c8279f62043ec 76 PANTHER PTHR13479 2 76 2.5E-29 T 22-04-2016 PP4_RS24930 d34b04165f5d04d5f46c8279f62043ec 76 TIGRFAM TIGR00165 S18: ribosomal protein bS18 4 72 3.0E-35 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS24930 d34b04165f5d04d5f46c8279f62043ec 76 PRINTS PR00974 Ribosomal protein S18 family signature 46 60 1.5E-17 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS24930 d34b04165f5d04d5f46c8279f62043ec 76 PRINTS PR00974 Ribosomal protein S18 family signature 60 70 1.5E-17 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS24930 d34b04165f5d04d5f46c8279f62043ec 76 PRINTS PR00974 Ribosomal protein S18 family signature 38 45 1.5E-17 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS24930 d34b04165f5d04d5f46c8279f62043ec 76 PRINTS PR00974 Ribosomal protein S18 family signature 28 38 1.5E-17 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS24930 d34b04165f5d04d5f46c8279f62043ec 76 SUPERFAMILY SSF46911 3 74 7.46E-28 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS24930 d34b04165f5d04d5f46c8279f62043ec 76 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 2 73 20.386 T 22-04-2016 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS00860 1368e4b24fb08fe0a6587a649c07e519 299 SUPERFAMILY SSF51197 19 299 1.88E-85 T 22-04-2016 PP4_RS00860 1368e4b24fb08fe0a6587a649c07e519 299 Gene3D G3DSA:3.60.130.10 15 299 2.4E-88 T 22-04-2016 PP4_RS00860 1368e4b24fb08fe0a6587a649c07e519 299 PANTHER PTHR30468 19 299 1.0E-159 T 22-04-2016 PP4_RS00860 1368e4b24fb08fe0a6587a649c07e519 299 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 20 292 2.2E-65 T 22-04-2016 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: REACT_13 PP4_RS00860 1368e4b24fb08fe0a6587a649c07e519 299 PANTHER PTHR30468:SF18 19 299 1.0E-159 T 22-04-2016 PP4_RS17575 92d6fb217751539ad3e8d1d16cb90f7d 201 ProSitePatterns PS01098 Lipolytic enzymes "G-D-S-L" family, serine active site. 24 34 - T 22-04-2016 IPR008265 Lipase, GDSL, active site GO:0006629|GO:0016298 PP4_RS17575 92d6fb217751539ad3e8d1d16cb90f7d 201 PANTHER PTHR30383 23 198 1.0E-44 T 22-04-2016 PP4_RS17575 92d6fb217751539ad3e8d1d16cb90f7d 201 Gene3D G3DSA:3.40.50.1110 23 200 2.1E-53 T 22-04-2016 IPR013830 SGNH hydrolase-type esterase domain PP4_RS17575 92d6fb217751539ad3e8d1d16cb90f7d 201 Pfam PF13472 GDSL-like Lipase/Acylhydrolase family 26 183 5.7E-27 T 22-04-2016 IPR013830 SGNH hydrolase-type esterase domain PP4_RS17575 92d6fb217751539ad3e8d1d16cb90f7d 201 SUPERFAMILY SSF52266 23 200 5.8E-50 T 22-04-2016 IPR013830 SGNH hydrolase-type esterase domain PP4_RS04385 6a7541a6ee7986449e8b73509898b10a 674 SMART SM00388 412 502 4.1E-7 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS04385 6a7541a6ee7986449e8b73509898b10a 674 Pfam PF00672 HAMP domain 167 234 5.8E-10 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS04385 6a7541a6ee7986449e8b73509898b10a 674 SMART SM00387 550 665 1.4E-25 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS04385 6a7541a6ee7986449e8b73509898b10a 674 SUPERFAMILY SSF47384 408 502 6.08E-8 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS04385 6a7541a6ee7986449e8b73509898b10a 674 SMART SM00304 185 238 1.6E-7 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS04385 6a7541a6ee7986449e8b73509898b10a 674 PANTHER PTHR24423 97 161 7.4E-142 T 22-04-2016 PP4_RS04385 6a7541a6ee7986449e8b73509898b10a 674 PANTHER PTHR24423 229 248 7.4E-142 T 22-04-2016 PP4_RS04385 6a7541a6ee7986449e8b73509898b10a 674 PANTHER PTHR24423 465 663 7.4E-142 T 22-04-2016 PP4_RS04385 6a7541a6ee7986449e8b73509898b10a 674 PANTHER PTHR24423 285 440 7.4E-142 T 22-04-2016 PP4_RS04385 6a7541a6ee7986449e8b73509898b10a 674 SUPERFAMILY SSF55874 493 666 1.44E-37 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS04385 6a7541a6ee7986449e8b73509898b10a 674 Pfam PF00989 PAS fold 289 394 7.4E-9 T 22-04-2016 IPR013767 PAS fold GO:0006355 PP4_RS04385 6a7541a6ee7986449e8b73509898b10a 674 Gene3D G3DSA:3.30.565.10 488 666 5.7E-41 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS04385 6a7541a6ee7986449e8b73509898b10a 674 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 288 403 7.9E-8 T 22-04-2016 IPR000014 PAS domain PP4_RS04385 6a7541a6ee7986449e8b73509898b10a 674 PRINTS PR00344 Bacterial sensor protein C-terminal signature 611 621 1.4E-14 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS04385 6a7541a6ee7986449e8b73509898b10a 674 PRINTS PR00344 Bacterial sensor protein C-terminal signature 593 607 1.4E-14 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS04385 6a7541a6ee7986449e8b73509898b10a 674 PRINTS PR00344 Bacterial sensor protein C-terminal signature 624 642 1.4E-14 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS04385 6a7541a6ee7986449e8b73509898b10a 674 PRINTS PR00344 Bacterial sensor protein C-terminal signature 649 662 1.4E-14 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS04385 6a7541a6ee7986449e8b73509898b10a 674 SMART SM00091 287 355 8.4E-6 T 22-04-2016 IPR000014 PAS domain PP4_RS04385 6a7541a6ee7986449e8b73509898b10a 674 SUPERFAMILY SSF158472 185 234 2.09E-6 T 22-04-2016 PP4_RS04385 6a7541a6ee7986449e8b73509898b10a 674 Gene3D G3DSA:1.10.287.130 414 487 3.1E-6 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS04385 6a7541a6ee7986449e8b73509898b10a 674 Pfam PF00512 His Kinase A (phospho-acceptor) domain 414 500 7.9E-10 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS04385 6a7541a6ee7986449e8b73509898b10a 674 PANTHER PTHR24423:SF450 97 161 7.4E-142 T 22-04-2016 PP4_RS04385 6a7541a6ee7986449e8b73509898b10a 674 PANTHER PTHR24423:SF450 229 248 7.4E-142 T 22-04-2016 PP4_RS04385 6a7541a6ee7986449e8b73509898b10a 674 PANTHER PTHR24423:SF450 465 663 7.4E-142 T 22-04-2016 PP4_RS04385 6a7541a6ee7986449e8b73509898b10a 674 PANTHER PTHR24423:SF450 285 440 7.4E-142 T 22-04-2016 PP4_RS04385 6a7541a6ee7986449e8b73509898b10a 674 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 554 663 3.4E-22 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS04385 6a7541a6ee7986449e8b73509898b10a 674 SUPERFAMILY SSF55785 275 395 4.71E-14 T 22-04-2016 IPR000014 PAS domain PP4_RS04385 6a7541a6ee7986449e8b73509898b10a 674 Gene3D G3DSA:3.30.450.20 286 395 2.2E-15 T 22-04-2016 PP4_RS18285 3306742dfd73109f4d044e73a4879b9a 160 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 11 154 8.1E-40 T 22-04-2016 PP4_RS18285 3306742dfd73109f4d044e73a4879b9a 160 PIRSF PIRSF000216 4 159 3.1E-43 T 22-04-2016 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 PP4_RS18285 3306742dfd73109f4d044e73a4879b9a 160 Gene3D G3DSA:3.40.30.10 75 153 2.4E-7 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS18285 3306742dfd73109f4d044e73a4879b9a 160 PANTHER PTHR10371 10 158 1.5E-39 T 22-04-2016 PP4_RS18285 3306742dfd73109f4d044e73a4879b9a 160 SUPERFAMILY SSF52833 9 157 1.57E-43 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS25440 ffa62b0e1344bcfc0a050f474953b983 192 SUPERFAMILY SSF101874 24 191 2.49E-52 T 22-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like PP4_RS25440 ffa62b0e1344bcfc0a050f474953b983 192 Gene3D G3DSA:2.40.128.110 23 191 2.6E-59 T 22-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like PP4_RS25440 ffa62b0e1344bcfc0a050f474953b983 192 Pfam PF04264 YceI-like domain 26 187 9.9E-41 T 22-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like PP4_RS25440 ffa62b0e1344bcfc0a050f474953b983 192 SMART SM00867 25 189 2.2E-68 T 22-04-2016 IPR007372 Lipid/polyisoprenoid-binding, YceI-like PP4_RS25440 ffa62b0e1344bcfc0a050f474953b983 192 PANTHER PTHR34406 1 191 1.9E-54 T 22-04-2016 PP4_RS25440 ffa62b0e1344bcfc0a050f474953b983 192 PANTHER PTHR34406:SF1 1 191 1.9E-54 T 22-04-2016 PP4_RS25440 ffa62b0e1344bcfc0a050f474953b983 192 Hamap MF_00780 Protein YceI [yceI]. 2 192 47.504 T 22-04-2016 IPR023480 Uncharacterised protein family UPF0312/YceI PP4_RS01880 d2044f5555ba38daf7469d187315ce16 977 SUPERFAMILY SSF81593 304 453 1.88E-42 T 22-04-2016 PP4_RS01880 d2044f5555ba38daf7469d187315ce16 977 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 572 824 7.1E-90 T 22-04-2016 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 PP4_RS01880 d2044f5555ba38daf7469d187315ce16 977 Pfam PF03710 Glutamate-ammonia ligase adenylyltransferase 45 293 2.1E-87 T 22-04-2016 IPR005190 Glutamate-ammonia ligase adenylyltransferase, repeated domain GO:0008882 PP4_RS01880 d2044f5555ba38daf7469d187315ce16 977 Pfam PF08335 GlnD PII-uridylyltransferase 872 945 1.2E-9 T 22-04-2016 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 PP4_RS01880 d2044f5555ba38daf7469d187315ce16 977 Pfam PF08335 GlnD PII-uridylyltransferase 314 453 4.5E-44 T 22-04-2016 IPR013546 PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase GO:0016779 PP4_RS01880 d2044f5555ba38daf7469d187315ce16 977 SUPERFAMILY SSF81301 544 831 3.76E-83 T 22-04-2016 PP4_RS01880 d2044f5555ba38daf7469d187315ce16 977 Hamap MF_00802 Glutamate-ammonia-ligase adenylyltransferase [glnE]. 42 977 20.068 T 22-04-2016 IPR023057 Glutamate-ammonia-ligase adenylyltransferase GO:0008882 PP4_RS01880 d2044f5555ba38daf7469d187315ce16 977 PANTHER PTHR30621 1 977 0.0 T 22-04-2016 PP4_RS01880 d2044f5555ba38daf7469d187315ce16 977 Gene3D G3DSA:3.30.460.10 130 302 6.4E-63 T 22-04-2016 PP4_RS01880 d2044f5555ba38daf7469d187315ce16 977 Gene3D G3DSA:3.30.460.10 658 830 9.9E-60 T 22-04-2016 PP4_RS01880 d2044f5555ba38daf7469d187315ce16 977 SUPERFAMILY SSF81593 835 973 1.33E-28 T 22-04-2016 PP4_RS01880 d2044f5555ba38daf7469d187315ce16 977 SUPERFAMILY SSF81301 17 303 2.94E-86 T 22-04-2016 PP4_RS14995 ae64ab0308e3693825302c2d9f038d16 277 PANTHER PTHR33643 1 274 8.1E-35 T 22-04-2016 PP4_RS14995 ae64ab0308e3693825302c2d9f038d16 277 Hamap MF_01384 Urease accessory protein UreD [ureD]. 16 261 28.412 T 22-04-2016 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 PP4_RS14995 ae64ab0308e3693825302c2d9f038d16 277 Pfam PF01774 UreD urease accessory protein 57 250 6.9E-44 T 22-04-2016 IPR002669 Urease accessory protein UreD GO:0006807|GO:0016151 PP4_RS14995 ae64ab0308e3693825302c2d9f038d16 277 PANTHER PTHR33643:SF1 1 274 8.1E-35 T 22-04-2016 PP4_RS14060 ee3ea0e84a3df8468ac8ad1a4fdf0dd0 215 Gene3D G3DSA:2.60.120.590 21 213 2.2E-54 T 22-04-2016 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like PP4_RS14060 ee3ea0e84a3df8468ac8ad1a4fdf0dd0 215 Pfam PF13532 2OG-Fe(II) oxygenase superfamily 22 211 9.9E-55 T 22-04-2016 IPR027450 Alpha-ketoglutarate-dependent dioxygenase AlkB-like PP4_RS14060 ee3ea0e84a3df8468ac8ad1a4fdf0dd0 215 PANTHER PTHR16557 67 211 1.5E-47 T 22-04-2016 IPR004574 Alkylated DNA repair protein AlkB GO:0006281|GO:0055114 PP4_RS14060 ee3ea0e84a3df8468ac8ad1a4fdf0dd0 215 SUPERFAMILY SSF51197 18 212 1.51E-60 T 22-04-2016 PP4_RS26755 c30582c8bf2ddb82c59447202ff59809 142 SUPERFAMILY SSF50331 74 140 1.36E-19 T 22-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal PP4_RS26755 c30582c8bf2ddb82c59447202ff59809 142 Gene3D G3DSA:2.40.50.100 73 140 3.9E-27 T 22-04-2016 PP4_RS26755 c30582c8bf2ddb82c59447202ff59809 142 Gene3D G3DSA:2.40.50.100 1 69 1.8E-27 T 22-04-2016 PP4_RS26755 c30582c8bf2ddb82c59447202ff59809 142 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 73 140 4.1E-23 T 22-04-2016 IPR004606 Molybdenum-pterin binding GO:0006810|GO:0030151 PP4_RS26755 c30582c8bf2ddb82c59447202ff59809 142 TIGRFAM TIGR00638 Mop: molybdenum-pterin binding domain 1 69 3.1E-24 T 22-04-2016 IPR004606 Molybdenum-pterin binding GO:0006810|GO:0030151 PP4_RS26755 c30582c8bf2ddb82c59447202ff59809 142 PANTHER PTHR30432 1 142 1.7E-12 T 22-04-2016 PP4_RS26755 c30582c8bf2ddb82c59447202ff59809 142 Pfam PF03459 TOBE domain 76 137 6.0E-15 T 22-04-2016 IPR005116 Transport-associated OB, type 1 PP4_RS26755 c30582c8bf2ddb82c59447202ff59809 142 Pfam PF03459 TOBE domain 4 64 1.7E-15 T 22-04-2016 IPR005116 Transport-associated OB, type 1 PP4_RS26755 c30582c8bf2ddb82c59447202ff59809 142 SUPERFAMILY SSF50331 1 70 1.94E-20 T 22-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal PP4_RS11065 c756feb0783fdfb9c57fb1c4b214de89 346 Gene3D G3DSA:3.20.20.30 1 346 5.2E-84 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS11065 c756feb0783fdfb9c57fb1c4b214de89 346 Pfam PF00296 Luciferase-like monooxygenase 1 316 5.1E-56 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS11065 c756feb0783fdfb9c57fb1c4b214de89 346 PANTHER PTHR30137 1 346 5.4E-45 T 22-04-2016 PP4_RS11065 c756feb0783fdfb9c57fb1c4b214de89 346 SUPERFAMILY SSF51679 1 345 3.06E-76 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS16720 b181f0cd64eecd212fc0dcfbcf3d2126 410 PANTHER PTHR10909 7 407 3.2E-65 T 22-04-2016 PP4_RS16720 b181f0cd64eecd212fc0dcfbcf3d2126 410 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 240 373 9.1E-17 T 22-04-2016 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain PP4_RS16720 b181f0cd64eecd212fc0dcfbcf3d2126 410 SUPERFAMILY SSF47203 232 390 4.83E-19 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS16720 b181f0cd64eecd212fc0dcfbcf3d2126 410 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 132 214 5.1E-9 T 22-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 PP4_RS16720 b181f0cd64eecd212fc0dcfbcf3d2126 410 PIRSF PIRSF016578 4 383 1.9E-26 T 22-04-2016 PP4_RS16720 b181f0cd64eecd212fc0dcfbcf3d2126 410 Gene3D G3DSA:1.10.540.10 7 111 2.1E-21 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS16720 b181f0cd64eecd212fc0dcfbcf3d2126 410 Gene3D G3DSA:2.40.110.10 137 215 5.1E-17 T 22-04-2016 PP4_RS16720 b181f0cd64eecd212fc0dcfbcf3d2126 410 Gene3D G3DSA:1.20.140.10 216 393 5.5E-46 T 22-04-2016 PP4_RS16720 b181f0cd64eecd212fc0dcfbcf3d2126 410 PANTHER PTHR10909:SF300 7 407 3.2E-65 T 22-04-2016 PP4_RS16720 b181f0cd64eecd212fc0dcfbcf3d2126 410 SUPERFAMILY SSF56645 21 221 6.02E-38 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 PP4_RS16720 b181f0cd64eecd212fc0dcfbcf3d2126 410 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 20 121 1.0E-6 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS23005 6d208bd100909c764c1d74370cfcecff 208 PANTHER PTHR10242:SF0 13 207 2.7E-60 T 22-04-2016 PP4_RS23005 6d208bd100909c764c1d74370cfcecff 208 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 50 191 6.1E-16 T 22-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 PP4_RS23005 6d208bd100909c764c1d74370cfcecff 208 PANTHER PTHR10242 13 207 2.7E-60 T 22-04-2016 PP4_RS23005 6d208bd100909c764c1d74370cfcecff 208 Gene3D G3DSA:1.10.1670.10 159 207 7.3E-16 T 22-04-2016 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal PP4_RS23005 6d208bd100909c764c1d74370cfcecff 208 SUPERFAMILY SSF48150 42 207 8.9E-42 T 22-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 PP4_RS23005 6d208bd100909c764c1d74370cfcecff 208 Gene3D G3DSA:1.10.340.30 45 157 4.9E-31 T 22-04-2016 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: REACT_216 PP4_RS23005 6d208bd100909c764c1d74370cfcecff 208 SMART SM00478 54 208 4.1E-16 T 22-04-2016 IPR003265 HhH-GPD domain GO:0006284 Reactome: REACT_216 PP4_RS00695 188f48f27a8ce1391243295ca57607cb 435 Pfam PF03600 Citrate transporter 13 377 5.8E-52 T 22-04-2016 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 PP4_RS00695 188f48f27a8ce1391243295ca57607cb 435 PANTHER PTHR10283 9 429 1.2E-196 T 22-04-2016 PP4_RS00695 188f48f27a8ce1391243295ca57607cb 435 PANTHER PTHR10283:SF87 9 429 1.2E-196 T 22-04-2016 IPR014738 Citrate transporter GO:0015137|GO:0015746 PP4_RS00695 188f48f27a8ce1391243295ca57607cb 435 TIGRFAM TIGR00784 citMHS: citrate transporter 1 429 2.6E-189 T 22-04-2016 IPR014738 Citrate transporter GO:0015137|GO:0015746 PP4_RS21425 1ac226dc0d893d2e21a498984e6f0a59 393 PANTHER PTHR11609 1 382 1.3E-221 T 22-04-2016 PP4_RS21425 1ac226dc0d893d2e21a498984e6f0a59 393 Gene3D G3DSA:3.30.470.20 199 389 4.5E-70 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PP4_RS21425 1ac226dc0d893d2e21a498984e6f0a59 393 TIGRFAM TIGR01142 purT: phosphoribosylglycinamide formyltransferase 2 14 392 3.8E-192 T 22-04-2016 IPR005862 Phosphoribosylglycinamide formyltransferase 2 GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 UniPathway: UPA00074 PP4_RS21425 1ac226dc0d893d2e21a498984e6f0a59 393 Gene3D G3DSA:3.40.50.20 5 120 4.3E-39 T 22-04-2016 IPR016185 Pre-ATP-grasp domain PP4_RS21425 1ac226dc0d893d2e21a498984e6f0a59 393 Pfam PF01370 NAD dependent epimerase/dehydratase family 21 81 1.4E-4 T 22-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 PP4_RS21425 1ac226dc0d893d2e21a498984e6f0a59 393 Gene3D G3DSA:3.30.1490.20 123 198 8.1E-27 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 PP4_RS21425 1ac226dc0d893d2e21a498984e6f0a59 393 SUPERFAMILY SSF56059 120 385 1.29E-56 T 22-04-2016 PP4_RS21425 1ac226dc0d893d2e21a498984e6f0a59 393 PANTHER PTHR11609:SF7 1 382 1.3E-221 T 22-04-2016 PP4_RS21425 1ac226dc0d893d2e21a498984e6f0a59 393 Hamap MF_01643 Phosphoribosylglycinamide formyltransferase 2 [purT]. 8 392 52.593 T 22-04-2016 IPR005862 Phosphoribosylglycinamide formyltransferase 2 GO:0000287|GO:0004644|GO:0005524|GO:0009152|GO:0016742 UniPathway: UPA00074 PP4_RS21425 1ac226dc0d893d2e21a498984e6f0a59 393 SUPERFAMILY SSF52440 3 112 3.6E-34 T 22-04-2016 IPR016185 Pre-ATP-grasp domain PP4_RS21425 1ac226dc0d893d2e21a498984e6f0a59 393 Pfam PF02222 ATP-grasp domain 123 295 1.0E-54 T 22-04-2016 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type UniPathway: UPA00074 PP4_RS07810 cbaa3e012dfef5d7db8c6a40f1cda25c 571 Gene3D G3DSA:3.40.30.10 459 566 2.6E-26 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS07810 cbaa3e012dfef5d7db8c6a40f1cda25c 571 Gene3D G3DSA:2.60.40.1250 22 134 4.5E-34 T 22-04-2016 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain PP4_RS07810 cbaa3e012dfef5d7db8c6a40f1cda25c 571 PANTHER PTHR32234:SF0 1 570 3.5E-177 T 22-04-2016 IPR022910 Thiol:disulphide interchange protein DsbD GO:0047134|GO:0055114 PP4_RS07810 cbaa3e012dfef5d7db8c6a40f1cda25c 571 SUPERFAMILY SSF52833 464 562 4.73E-19 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS07810 cbaa3e012dfef5d7db8c6a40f1cda25c 571 PANTHER PTHR32234 1 570 3.5E-177 T 22-04-2016 PP4_RS07810 cbaa3e012dfef5d7db8c6a40f1cda25c 571 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 165 365 2.6E-13 T 22-04-2016 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 PP4_RS07810 cbaa3e012dfef5d7db8c6a40f1cda25c 571 ProSitePatterns PS00194 Thioredoxin family active site. 476 494 - T 22-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 PP4_RS07810 cbaa3e012dfef5d7db8c6a40f1cda25c 571 SUPERFAMILY SSF74863 23 133 6.54E-33 T 22-04-2016 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain PP4_RS07810 cbaa3e012dfef5d7db8c6a40f1cda25c 571 Pfam PF13899 Thioredoxin-like 460 531 1.4E-11 T 22-04-2016 PP4_RS07810 cbaa3e012dfef5d7db8c6a40f1cda25c 571 Pfam PF11412 Disulphide bond corrector protein DsbC 25 132 6.8E-27 T 22-04-2016 IPR028250 Thiol:disulfide interchange protein DsbD, N-terminal domain PP4_RS07810 cbaa3e012dfef5d7db8c6a40f1cda25c 571 Hamap MF_00399 Thiol:disulfide interchange protein DsbD [dsbD]. 1 568 35.788 T 22-04-2016 IPR022910 Thiol:disulphide interchange protein DsbD GO:0047134|GO:0055114 PP4_RS18105 d12cc62f7efb706685b79fc8c48875b2 134 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger. 96 120 - T 22-04-2016 IPR020458 Zinc finger, DksA/TraR C4-type conserved site PP4_RS18105 d12cc62f7efb706685b79fc8c48875b2 134 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger 92 126 1.5E-11 T 22-04-2016 IPR000962 Zinc finger, DksA/TraR C4-type GO:0008270 PP4_RS18105 d12cc62f7efb706685b79fc8c48875b2 134 SUPERFAMILY SSF109635 1 90 9.02E-21 T 22-04-2016 PP4_RS18105 d12cc62f7efb706685b79fc8c48875b2 134 PANTHER PTHR33823 12 133 2.7E-23 T 22-04-2016 PP4_RS18105 d12cc62f7efb706685b79fc8c48875b2 134 PANTHER PTHR33823:SF2 12 133 2.7E-23 T 22-04-2016 PP4_RS18105 d12cc62f7efb706685b79fc8c48875b2 134 SUPERFAMILY SSF57716 93 131 2.0E-8 T 22-04-2016 PP4_RS25775 0abb4cbf955cc2a8422b0134a61d2e0c 478 Pfam PF00072 Response regulator receiver domain 7 115 4.2E-29 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS25775 0abb4cbf955cc2a8422b0134a61d2e0c 478 Gene3D G3DSA:1.10.10.60 398 466 5.1E-22 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS25775 0abb4cbf955cc2a8422b0134a61d2e0c 478 TIGRFAM TIGR01818 ntrC: nitrogen regulation protein NR(I) 7 463 7.5E-239 T 22-04-2016 IPR010114 Signal transduction response regulator, nitrogen regulation NR(I) GO:0000156|GO:0000160|GO:0003677|GO:0005524|GO:0006808 PP4_RS25775 0abb4cbf955cc2a8422b0134a61d2e0c 478 Gene3D G3DSA:1.10.8.60 314 387 4.8E-21 T 22-04-2016 PP4_RS25775 0abb4cbf955cc2a8422b0134a61d2e0c 478 Gene3D G3DSA:3.40.50.300 138 312 6.8E-61 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25775 0abb4cbf955cc2a8422b0134a61d2e0c 478 SUPERFAMILY SSF52540 140 384 2.18E-72 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25775 0abb4cbf955cc2a8422b0134a61d2e0c 478 Pfam PF00158 Sigma-54 interaction domain 141 308 1.9E-70 T 22-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 PP4_RS25775 0abb4cbf955cc2a8422b0134a61d2e0c 478 SMART SM00382 161 304 3.8E-12 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS25775 0abb4cbf955cc2a8422b0134a61d2e0c 478 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 227 242 - T 22-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PP4_RS25775 0abb4cbf955cc2a8422b0134a61d2e0c 478 SUPERFAMILY SSF52172 5 186 5.12E-42 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS25775 0abb4cbf955cc2a8422b0134a61d2e0c 478 PANTHER PTHR32071:SF15 1 476 8.4E-250 T 22-04-2016 PP4_RS25775 0abb4cbf955cc2a8422b0134a61d2e0c 478 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 429 446 2.5E-7 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS25775 0abb4cbf955cc2a8422b0134a61d2e0c 478 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 446 466 2.5E-7 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS25775 0abb4cbf955cc2a8422b0134a61d2e0c 478 SUPERFAMILY SSF46689 381 465 7.17E-21 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS25775 0abb4cbf955cc2a8422b0134a61d2e0c 478 Gene3D G3DSA:3.40.50.2300 6 127 2.6E-34 T 22-04-2016 PP4_RS25775 0abb4cbf955cc2a8422b0134a61d2e0c 478 PANTHER PTHR32071 1 476 8.4E-250 T 22-04-2016 PP4_RS25775 0abb4cbf955cc2a8422b0134a61d2e0c 478 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 165 178 - T 22-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 PP4_RS25775 0abb4cbf955cc2a8422b0134a61d2e0c 478 Pfam PF02954 Bacterial regulatory protein, Fis family 424 463 1.1E-12 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS25775 0abb4cbf955cc2a8422b0134a61d2e0c 478 SMART SM00448 5 116 6.0E-32 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS18745 fff38f7fc8315e07c4fad2b819722888 415 Pfam PF13579 Glycosyl transferase 4-like domain 16 206 3.0E-25 T 22-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain PP4_RS18745 fff38f7fc8315e07c4fad2b819722888 415 SUPERFAMILY SSF53756 1 393 4.71E-47 T 22-04-2016 PP4_RS18745 fff38f7fc8315e07c4fad2b819722888 415 PANTHER PTHR12526 1 400 1.1E-47 T 22-04-2016 PP4_RS18745 fff38f7fc8315e07c4fad2b819722888 415 Pfam PF13692 Glycosyl transferases group 1 222 358 3.2E-21 T 22-04-2016 PP4_RS18745 fff38f7fc8315e07c4fad2b819722888 415 PANTHER PTHR12526:SF220 1 400 1.1E-47 T 22-04-2016 PP4_RS05640 ff8be66ec8dca8ed0d138e4e10ae22e8 209 Pfam PF00043 Glutathione S-transferase, C-terminal domain 128 193 4.2E-8 T 22-04-2016 IPR004046 Glutathione S-transferase, C-terminal PP4_RS05640 ff8be66ec8dca8ed0d138e4e10ae22e8 209 PANTHER PTHR11260 1 195 6.4E-50 T 22-04-2016 PP4_RS05640 ff8be66ec8dca8ed0d138e4e10ae22e8 209 Gene3D G3DSA:1.20.1050.10 89 200 3.6E-29 T 22-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like PP4_RS05640 ff8be66ec8dca8ed0d138e4e10ae22e8 209 SUPERFAMILY SSF47616 75 198 3.68E-26 T 22-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like PP4_RS05640 ff8be66ec8dca8ed0d138e4e10ae22e8 209 SUPERFAMILY SSF52833 4 88 4.99E-27 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS05640 ff8be66ec8dca8ed0d138e4e10ae22e8 209 Pfam PF02798 Glutathione S-transferase, N-terminal domain 4 77 1.5E-18 T 22-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 PP4_RS05640 ff8be66ec8dca8ed0d138e4e10ae22e8 209 Gene3D G3DSA:3.40.30.10 5 88 3.6E-30 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS08910 9b1c049bc34d485d61bb5383335d6fe1 124 Pfam PF02537 CrcB-like protein, Camphor Resistance (CrcB) 7 118 6.7E-25 T 22-04-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 PP4_RS08910 9b1c049bc34d485d61bb5383335d6fe1 124 PANTHER PTHR28259 2 123 2.5E-34 T 22-04-2016 PP4_RS08910 9b1c049bc34d485d61bb5383335d6fe1 124 TIGRFAM TIGR00494 crcB: protein CrcB 7 121 6.0E-24 T 22-04-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 PP4_RS08910 9b1c049bc34d485d61bb5383335d6fe1 124 Hamap MF_00454 Putative fluoride ion transporter CrcB [crcB]. 5 123 19.274 T 22-04-2016 IPR003691 Putative fluoride ion transporter CrcB GO:0016021 PP4_RS18945 14ff24121873b2a49c5bcf037858e240 791 Gene3D G3DSA:3.20.20.60 480 786 2.0E-105 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PP4_RS18945 14ff24121873b2a49c5bcf037858e240 791 TIGRFAM TIGR01418 PEP_synth: phosphoenolpyruvate synthase 5 786 0.0 T 22-04-2016 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|UniPathway: UPA00138 PP4_RS18945 14ff24121873b2a49c5bcf037858e240 791 SUPERFAMILY SSF51621 461 786 1.99E-98 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PP4_RS18945 14ff24121873b2a49c5bcf037858e240 791 PIRSF PIRSF000854 1 791 0.0 T 22-04-2016 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|UniPathway: UPA00138 PP4_RS18945 14ff24121873b2a49c5bcf037858e240 791 Gene3D G3DSA:3.30.1490.20 3 192 6.8E-68 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 PP4_RS18945 14ff24121873b2a49c5bcf037858e240 791 SUPERFAMILY SSF56059 3 384 1.77E-107 T 22-04-2016 PP4_RS18945 14ff24121873b2a49c5bcf037858e240 791 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 481 780 6.1E-63 T 22-04-2016 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 PP4_RS18945 14ff24121873b2a49c5bcf037858e240 791 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 693 711 - T 22-04-2016 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 PP4_RS18945 14ff24121873b2a49c5bcf037858e240 791 Gene3D G3DSA:3.30.470.20 196 353 1.5E-61 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PP4_RS18945 14ff24121873b2a49c5bcf037858e240 791 PANTHER PTHR22931 2 266 0.0 T 22-04-2016 PP4_RS18945 14ff24121873b2a49c5bcf037858e240 791 PANTHER PTHR22931 282 786 0.0 T 22-04-2016 PP4_RS18945 14ff24121873b2a49c5bcf037858e240 791 PANTHER PTHR22931:SF7 2 266 0.0 T 22-04-2016 PP4_RS18945 14ff24121873b2a49c5bcf037858e240 791 PANTHER PTHR22931:SF7 282 786 0.0 T 22-04-2016 PP4_RS18945 14ff24121873b2a49c5bcf037858e240 791 Gene3D G3DSA:3.50.30.10 354 459 9.7E-36 T 22-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 PP4_RS18945 14ff24121873b2a49c5bcf037858e240 791 Pfam PF00391 PEP-utilising enzyme, mobile domain 383 454 2.9E-26 T 22-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 PP4_RS18945 14ff24121873b2a49c5bcf037858e240 791 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 17 343 2.7E-121 T 22-04-2016 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 PP4_RS18945 14ff24121873b2a49c5bcf037858e240 791 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 413 424 - T 22-04-2016 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 PP4_RS18945 14ff24121873b2a49c5bcf037858e240 791 SUPERFAMILY SSF52009 347 464 9.42E-35 T 22-04-2016 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 PP4_RS18945 14ff24121873b2a49c5bcf037858e240 791 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 693 708 9.0E-6 T 22-04-2016 PP4_RS18945 14ff24121873b2a49c5bcf037858e240 791 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 710 725 9.0E-6 T 22-04-2016 PP4_RS18945 14ff24121873b2a49c5bcf037858e240 791 PRINTS PR01736 Phosphoenolpyruvate-protein phosphotransferase signature 746 758 9.0E-6 T 22-04-2016 PP4_RS15415 05786caeb4c4e58c9684589f36aafbd2 822 TIGRFAM TIGR02779 NHEJ_ligase_lig: DNA ligase D, ligase domain 213 513 1.3E-110 T 22-04-2016 IPR014146 DNA ligase D, ligase domain PP4_RS15415 05786caeb4c4e58c9684589f36aafbd2 822 SUPERFAMILY SSF56091 202 394 6.0E-47 T 22-04-2016 PP4_RS15415 05786caeb4c4e58c9684589f36aafbd2 822 Gene3D G3DSA:3.30.470.30 235 342 1.3E-30 T 22-04-2016 PP4_RS15415 05786caeb4c4e58c9684589f36aafbd2 822 Gene3D G3DSA:3.30.1490.70 207 234 1.0E-18 T 22-04-2016 PP4_RS15415 05786caeb4c4e58c9684589f36aafbd2 822 Gene3D G3DSA:3.30.1490.70 351 394 1.0E-18 T 22-04-2016 PP4_RS15415 05786caeb4c4e58c9684589f36aafbd2 822 TIGRFAM TIGR02777 LigD_PE_dom: DNA ligase D, 3'-phosphoesterase domain 5 160 9.8E-73 T 22-04-2016 IPR014144 DNA ligase D, 3'-phosphoesterase domain PP4_RS15415 05786caeb4c4e58c9684589f36aafbd2 822 PANTHER PTHR10459:SF70 207 519 1.1E-77 T 22-04-2016 PP4_RS15415 05786caeb4c4e58c9684589f36aafbd2 822 PANTHER PTHR10459 207 519 1.1E-77 T 22-04-2016 PP4_RS15415 05786caeb4c4e58c9684589f36aafbd2 822 Pfam PF01068 ATP dependent DNA ligase domain 223 393 6.2E-28 T 22-04-2016 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 Reactome: REACT_216 PP4_RS15415 05786caeb4c4e58c9684589f36aafbd2 822 Pfam PF04679 ATP dependent DNA ligase C terminal region 412 508 2.1E-24 T 22-04-2016 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 Reactome: REACT_216 PP4_RS15415 05786caeb4c4e58c9684589f36aafbd2 822 Gene3D G3DSA:2.40.50.140 396 514 6.6E-45 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS15415 05786caeb4c4e58c9684589f36aafbd2 822 TIGRFAM TIGR02778 ligD_pol: DNA ligase D, polymerase domain 536 776 1.8E-86 T 22-04-2016 IPR014145 DNA ligase D, polymerase domain PP4_RS15415 05786caeb4c4e58c9684589f36aafbd2 822 TIGRFAM TIGR02776 NHEJ_ligase_prk: DNA ligase D 222 804 1.2E-225 T 22-04-2016 IPR014143 DNA ligase D PP4_RS15415 05786caeb4c4e58c9684589f36aafbd2 822 SUPERFAMILY SSF50249 396 513 4.28E-30 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS15415 05786caeb4c4e58c9684589f36aafbd2 822 Pfam PF13298 DNA polymerase Ligase (LigD) 38 141 9.0E-40 T 22-04-2016 IPR014144 DNA ligase D, 3'-phosphoesterase domain PP4_RS22275 1c02dafc4140e36cc81a05cafec0df7d 253 Pfam PF13181 Tetratricopeptide repeat 142 172 0.005 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS22275 1c02dafc4140e36cc81a05cafec0df7d 253 Pfam PF13181 Tetratricopeptide repeat 38 68 0.19 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS22275 1c02dafc4140e36cc81a05cafec0df7d 253 PANTHER PTHR23083 39 253 1.1E-23 T 22-04-2016 PP4_RS22275 1c02dafc4140e36cc81a05cafec0df7d 253 SMART SM00028 175 208 110.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS22275 1c02dafc4140e36cc81a05cafec0df7d 253 SMART SM00028 141 174 16.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS22275 1c02dafc4140e36cc81a05cafec0df7d 253 SMART SM00028 71 104 0.23 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS22275 1c02dafc4140e36cc81a05cafec0df7d 253 SMART SM00028 37 70 0.59 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS22275 1c02dafc4140e36cc81a05cafec0df7d 253 Pfam PF14559 Tetratricopeptide repeat 83 129 3.1E-6 T 22-04-2016 PP4_RS22275 1c02dafc4140e36cc81a05cafec0df7d 253 TIGRFAM TIGR02521 type_IV_pilW: type IV pilus biogenesis/stability protein PilW 8 240 3.2E-71 T 22-04-2016 IPR013360 Pilus biogenesis/stability type IV, PilW PP4_RS22275 1c02dafc4140e36cc81a05cafec0df7d 253 SUPERFAMILY SSF48452 38 225 3.03E-20 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS22275 1c02dafc4140e36cc81a05cafec0df7d 253 Gene3D G3DSA:1.25.40.10 35 238 4.9E-31 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS06785 becdc5576af7c3acef9500fdbca28773 262 TIGRFAM TIGR01267 Phe4hydrox_mono: phenylalanine-4-hydroxylase 11 254 3.1E-124 T 22-04-2016 IPR005960 Phenylalanine-4-hydroxylase, monomeric form GO:0004505|GO:0006559|GO:0055114 KEGG: 00360+1.14.16.1|KEGG: 00400+1.14.16.1|MetaCyc: PWY-6134|MetaCyc: PWY-7158|UniPathway: UPA00139 PP4_RS06785 becdc5576af7c3acef9500fdbca28773 262 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 138 157 3.1E-9 T 22-04-2016 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 PP4_RS06785 becdc5576af7c3acef9500fdbca28773 262 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 209 228 3.1E-9 T 22-04-2016 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 PP4_RS06785 becdc5576af7c3acef9500fdbca28773 262 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 178 196 3.1E-9 T 22-04-2016 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 PP4_RS06785 becdc5576af7c3acef9500fdbca28773 262 PRINTS PR00372 Biopterin-dependent aromatic amino acid hydroxylase signature 74 96 3.1E-9 T 22-04-2016 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 PP4_RS06785 becdc5576af7c3acef9500fdbca28773 262 Pfam PF00351 Biopterin-dependent aromatic amino acid hydroxylase 15 229 8.5E-47 T 22-04-2016 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 PP4_RS06785 becdc5576af7c3acef9500fdbca28773 262 SUPERFAMILY SSF56534 3 249 3.53E-100 T 22-04-2016 IPR019774 Aromatic amino acid hydroxylase, C-terminal GO:0016714|GO:0055114 PP4_RS06785 becdc5576af7c3acef9500fdbca28773 262 PANTHER PTHR11473 9 224 4.3E-91 T 22-04-2016 IPR001273 Aromatic amino acid hydroxylase GO:0004497|GO:0005506|GO:0009072|GO:0055114 PP4_RS06785 becdc5576af7c3acef9500fdbca28773 262 ProSitePatterns PS00367 Biopterin-dependent aromatic amino acid hydroxylases signature. 117 128 - T 22-04-2016 IPR018301 Aromatic amino acid hydroxylase, iron/copper binding site GO:0004497|GO:0005506|GO:0009072|GO:0055114 PP4_RS06785 becdc5576af7c3acef9500fdbca28773 262 Gene3D G3DSA:1.10.800.10 3 245 9.9E-93 T 22-04-2016 IPR001273 Aromatic amino acid hydroxylase GO:0004497|GO:0005506|GO:0009072|GO:0055114 PP4_RS19575 bb6880ba89d89847f494e6df9f29ccd2 333 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 18 327 5.4E-110 T 22-04-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 PP4_RS19575 bb6880ba89d89847f494e6df9f29ccd2 333 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 3 331 38.51 T 22-04-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 PP4_RS19575 bb6880ba89d89847f494e6df9f29ccd2 333 SUPERFAMILY SSF52540 51 205 7.75E-15 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS19575 bb6880ba89d89847f494e6df9f29ccd2 333 PANTHER PTHR30160:SF13 4 313 2.5E-88 T 22-04-2016 PP4_RS19575 bb6880ba89d89847f494e6df9f29ccd2 333 Gene3D G3DSA:3.40.50.300 49 160 4.1E-6 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS19575 bb6880ba89d89847f494e6df9f29ccd2 333 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 27 315 2.6E-78 T 22-04-2016 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00030+2.7.1.13|KEGG: 00540+2.7.1.130|UniPathway: UPA00359 PP4_RS19575 bb6880ba89d89847f494e6df9f29ccd2 333 PANTHER PTHR30160 4 313 2.5E-88 T 22-04-2016 PP4_RS19530 75a493caf9161461430d2753a5c2567f 192 SUPERFAMILY SSF52972 2 185 3.47E-54 T 22-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like PP4_RS19530 75a493caf9161461430d2753a5c2567f 192 TIGRFAM TIGR00172 maf: septum formation protein Maf 3 184 2.9E-49 T 22-04-2016 IPR003697 Maf-like protein GO:0005737 PP4_RS19530 75a493caf9161461430d2753a5c2567f 192 PANTHER PTHR11746 118 189 3.4E-31 T 22-04-2016 PP4_RS19530 75a493caf9161461430d2753a5c2567f 192 Hamap MF_00528 Septum formation protein Maf [maf]. 3 191 27.919 T 22-04-2016 IPR003697 Maf-like protein GO:0005737 PP4_RS19530 75a493caf9161461430d2753a5c2567f 192 PANTHER PTHR11746:SF102 118 189 3.4E-31 T 22-04-2016 PP4_RS19530 75a493caf9161461430d2753a5c2567f 192 Pfam PF02545 Maf-like protein 4 185 2.6E-41 T 22-04-2016 IPR003697 Maf-like protein GO:0005737 PP4_RS19530 75a493caf9161461430d2753a5c2567f 192 PIRSF PIRSF006305 1 190 1.5E-39 T 22-04-2016 IPR003697 Maf-like protein GO:0005737 PP4_RS19530 75a493caf9161461430d2753a5c2567f 192 Gene3D G3DSA:3.90.950.10 2 189 6.4E-53 T 22-04-2016 IPR029001 Inosine triphosphate pyrophosphatase-like PP4_RS05375 cc639b0a20efedc70fcc8ce0debe7da3 67 PANTHER PTHR33747 1 67 6.3E-13 T 22-04-2016 PP4_RS05375 cc639b0a20efedc70fcc8ce0debe7da3 67 SUPERFAMILY SSF103642 46 66 2.45E-8 T 22-04-2016 PP4_RS05375 cc639b0a20efedc70fcc8ce0debe7da3 67 Gene3D G3DSA:3.10.450.50 23 66 1.7E-11 T 22-04-2016 IPR032710 NTF2-like domain PP4_RS05375 cc639b0a20efedc70fcc8ce0debe7da3 67 Pfam PF02810 SEC-C motif 49 66 2.4E-11 T 22-04-2016 IPR004027 SEC-C motif PP4_RS00475 9c975434732b2de1c9174cf069cb903d 188 Pfam PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 27 168 3.2E-47 T 22-04-2016 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 PP4_RS00475 9c975434732b2de1c9174cf069cb903d 188 SUPERFAMILY SSF110111 53 171 1.18E-45 T 22-04-2016 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain PP4_RS00475 9c975434732b2de1c9174cf069cb903d 188 PANTHER PTHR21320:SF3 7 169 1.1E-38 T 22-04-2016 PP4_RS00475 9c975434732b2de1c9174cf069cb903d 188 PIRSF PIRSF005413 3 185 8.8E-64 T 22-04-2016 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 PP4_RS00475 9c975434732b2de1c9174cf069cb903d 188 Gene3D G3DSA:2.60.370.10 54 178 7.5E-47 T 22-04-2016 IPR023471 Cytochrome c oxidase assembly protein CtaG/Cox11, domain PP4_RS00475 9c975434732b2de1c9174cf069cb903d 188 PANTHER PTHR21320 7 169 1.1E-38 T 22-04-2016 IPR007533 Cytochrome c oxidase assembly protein CtaG/Cox11 GO:0005507 PP4_RS16690 90cbf52b7e362192a0fd832e7a5aee65 275 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 91 261 3.2E-26 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS16690 90cbf52b7e362192a0fd832e7a5aee65 275 SUPERFAMILY SSF161098 67 252 3.53E-24 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS16690 90cbf52b7e362192a0fd832e7a5aee65 275 PANTHER PTHR30465:SF10 15 272 3.3E-58 T 22-04-2016 PP4_RS16690 90cbf52b7e362192a0fd832e7a5aee65 275 PANTHER PTHR30465 15 272 3.3E-58 T 22-04-2016 PP4_RS16690 90cbf52b7e362192a0fd832e7a5aee65 275 Gene3D G3DSA:1.10.3720.10 66 264 4.5E-24 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS15950 48cfb6cd5d23a682f25baf65014c4de2 246 SMART SM00382 28 211 7.2E-12 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS15950 48cfb6cd5d23a682f25baf65014c4de2 246 Pfam PF00005 ABC transporter 19 162 1.4E-29 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS15950 48cfb6cd5d23a682f25baf65014c4de2 246 Gene3D G3DSA:3.40.50.300 3 224 2.3E-62 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS15950 48cfb6cd5d23a682f25baf65014c4de2 246 TIGRFAM TIGR03864 PQQ_ABC_ATP: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system 3 237 9.0E-105 T 22-04-2016 IPR022467 ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system PP4_RS15950 48cfb6cd5d23a682f25baf65014c4de2 246 PANTHER PTHR24220 5 221 2.2E-67 T 22-04-2016 PP4_RS15950 48cfb6cd5d23a682f25baf65014c4de2 246 SUPERFAMILY SSF52540 3 221 7.73E-56 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS00585 fd5b7203ca62f42f0973c34cdc33e2bb 205 Gene3D G3DSA:1.10.760.10 109 136 0.001 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS00585 fd5b7203ca62f42f0973c34cdc33e2bb 205 PIRSF PIRSF000005 1 205 5.7E-62 T 22-04-2016 IPR024167 Cytochrome c4 GO:0005506|GO:0009055|GO:0020037|GO:0042597 PP4_RS00585 fd5b7203ca62f42f0973c34cdc33e2bb 205 PANTHER PTHR33751:SF3 17 205 2.4E-64 T 22-04-2016 PP4_RS00585 fd5b7203ca62f42f0973c34cdc33e2bb 205 SUPERFAMILY SSF46626 108 204 3.49E-21 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS00585 fd5b7203ca62f42f0973c34cdc33e2bb 205 PANTHER PTHR33751 17 205 2.4E-64 T 22-04-2016 PP4_RS00585 fd5b7203ca62f42f0973c34cdc33e2bb 205 Gene3D G3DSA:1.10.760.10 137 205 3.0E-25 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS00585 fd5b7203ca62f42f0973c34cdc33e2bb 205 Pfam PF00034 Cytochrome c 116 203 7.9E-9 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS00585 fd5b7203ca62f42f0973c34cdc33e2bb 205 Pfam PF00034 Cytochrome c 35 104 1.2E-7 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS00585 fd5b7203ca62f42f0973c34cdc33e2bb 205 Gene3D G3DSA:1.10.760.10 26 105 6.8E-26 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS00585 fd5b7203ca62f42f0973c34cdc33e2bb 205 SUPERFAMILY SSF46626 16 103 5.42E-20 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS26625 a22b5fe8d89b22f48f75a1285c3621e5 322 Pfam PF00175 Oxidoreductase NAD-binding domain 197 297 4.5E-15 T 22-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 PP4_RS26625 a22b5fe8d89b22f48f75a1285c3621e5 322 SUPERFAMILY SSF54292 2 81 1.84E-18 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS26625 a22b5fe8d89b22f48f75a1285c3621e5 322 Gene3D G3DSA:3.40.50.80 191 317 6.2E-31 T 22-04-2016 PP4_RS26625 a22b5fe8d89b22f48f75a1285c3621e5 322 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 4 69 1.2E-8 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS26625 a22b5fe8d89b22f48f75a1285c3621e5 322 PANTHER PTHR19370 31 316 1.9E-79 T 22-04-2016 PP4_RS26625 a22b5fe8d89b22f48f75a1285c3621e5 322 Gene3D G3DSA:2.40.30.10 92 186 6.8E-20 T 22-04-2016 PP4_RS26625 a22b5fe8d89b22f48f75a1285c3621e5 322 PANTHER PTHR19370:SF68 31 316 1.9E-79 T 22-04-2016 PP4_RS26625 a22b5fe8d89b22f48f75a1285c3621e5 322 SUPERFAMILY SSF63380 92 186 9.32E-17 T 22-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 PP4_RS26625 a22b5fe8d89b22f48f75a1285c3621e5 322 SUPERFAMILY SSF52343 192 317 4.45E-31 T 22-04-2016 PP4_RS26625 a22b5fe8d89b22f48f75a1285c3621e5 322 PRINTS PR00410 Phenol hydroxylase reductase family signature 196 215 1.8E-9 T 22-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PP4_RS26625 a22b5fe8d89b22f48f75a1285c3621e5 322 PRINTS PR00410 Phenol hydroxylase reductase family signature 138 145 1.8E-9 T 22-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PP4_RS26625 a22b5fe8d89b22f48f75a1285c3621e5 322 PRINTS PR00410 Phenol hydroxylase reductase family signature 221 230 1.8E-9 T 22-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PP4_RS26625 a22b5fe8d89b22f48f75a1285c3621e5 322 PRINTS PR00410 Phenol hydroxylase reductase family signature 122 134 1.8E-9 T 22-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PP4_RS26625 a22b5fe8d89b22f48f75a1285c3621e5 322 Gene3D G3DSA:3.10.20.30 2 79 1.1E-18 T 22-04-2016 IPR012675 Beta-grasp domain PP4_RS05630 d15073d3b7d0e54c645a60591542ec74 183 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 9 178 9.9E-35 T 22-04-2016 IPR011978 Uncharacterised protein family UPF0149 PP4_RS05630 d15073d3b7d0e54c645a60591542ec74 183 Pfam PF03695 Uncharacterised protein family (UPF0149) 11 178 2.7E-29 T 22-04-2016 IPR011978 Uncharacterised protein family UPF0149 PP4_RS05630 d15073d3b7d0e54c645a60591542ec74 183 PANTHER PTHR33747:SF2 5 157 1.4E-28 T 22-04-2016 PP4_RS05630 d15073d3b7d0e54c645a60591542ec74 183 SUPERFAMILY SSF101327 9 177 3.79E-22 T 22-04-2016 IPR011978 Uncharacterised protein family UPF0149 PP4_RS05630 d15073d3b7d0e54c645a60591542ec74 183 PANTHER PTHR33747 5 157 1.4E-28 T 22-04-2016 PP4_RS07875 32e7674909ebbb65f7d04c1da8ee6035 322 ProSitePatterns PS01173 Lipolytic enzymes "G-D-X-G" family, putative histidine active site. 86 102 - T 22-04-2016 IPR002168 Lipase, GDXG, putative histidine active site GO:0008152|GO:0016787 PP4_RS07875 32e7674909ebbb65f7d04c1da8ee6035 322 Pfam PF07859 alpha/beta hydrolase fold 86 295 1.5E-60 T 22-04-2016 IPR013094 Alpha/beta hydrolase fold-3 GO:0008152|GO:0016787 PP4_RS07875 32e7674909ebbb65f7d04c1da8ee6035 322 SUPERFAMILY SSF53474 30 317 1.8E-62 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS07875 32e7674909ebbb65f7d04c1da8ee6035 322 PANTHER PTHR23024 54 316 2.6E-66 T 22-04-2016 PP4_RS07875 32e7674909ebbb65f7d04c1da8ee6035 322 PANTHER PTHR23024:SF207 54 316 2.6E-66 T 22-04-2016 PP4_RS07875 32e7674909ebbb65f7d04c1da8ee6035 322 Gene3D G3DSA:3.40.50.1820 5 317 7.2E-83 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS01610 2e6a1d9856768dcf138a87fcb6d8110b 197 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 4 197 41.669 T 22-04-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 PP4_RS01610 2e6a1d9856768dcf138a87fcb6d8110b 197 PANTHER PTHR23133:SF2 1 197 8.5E-100 T 22-04-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 PP4_RS01610 2e6a1d9856768dcf138a87fcb6d8110b 197 Gene3D G3DSA:3.30.230.40 92 197 1.5E-30 T 22-04-2016 PP4_RS01610 2e6a1d9856768dcf138a87fcb6d8110b 197 SUPERFAMILY SSF54211 89 181 1.26E-34 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PP4_RS01610 2e6a1d9856768dcf138a87fcb6d8110b 197 ProSitePatterns PS00955 Imidazoleglycerol-phosphate dehydratase signature 2. 158 170 - T 22-04-2016 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 PP4_RS01610 2e6a1d9856768dcf138a87fcb6d8110b 197 SUPERFAMILY SSF54211 4 88 6.2E-33 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PP4_RS01610 2e6a1d9856768dcf138a87fcb6d8110b 197 Gene3D G3DSA:3.30.230.40 3 90 5.7E-37 T 22-04-2016 PP4_RS01610 2e6a1d9856768dcf138a87fcb6d8110b 197 PANTHER PTHR23133 1 197 8.5E-100 T 22-04-2016 PP4_RS01610 2e6a1d9856768dcf138a87fcb6d8110b 197 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 63 76 - T 22-04-2016 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 PP4_RS01610 2e6a1d9856768dcf138a87fcb6d8110b 197 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 34 176 1.6E-61 T 22-04-2016 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19|UniPathway: UPA00031 PP4_RS10385 ba765d4ab1aec19ae842315846069a9a 499 PANTHER PTHR11748 1 487 3.2E-210 T 22-04-2016 PP4_RS10385 ba765d4ab1aec19ae842315846069a9a 499 PANTHER PTHR11748:SF78 1 487 3.2E-210 T 22-04-2016 PP4_RS10385 ba765d4ab1aec19ae842315846069a9a 499 Pfam PF02913 FAD linked oxidases, C-terminal domain 230 470 5.9E-71 T 22-04-2016 IPR004113 FAD-linked oxidase, C-terminal GO:0003824|GO:0050660 PP4_RS10385 ba765d4ab1aec19ae842315846069a9a 499 Gene3D G3DSA:1.10.45.10 432 471 3.1E-10 T 22-04-2016 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 PP4_RS10385 ba765d4ab1aec19ae842315846069a9a 499 Gene3D G3DSA:3.30.465.10 111 231 7.0E-33 T 22-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 PP4_RS10385 ba765d4ab1aec19ae842315846069a9a 499 SUPERFAMILY SSF55103 204 474 5.23E-80 T 22-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 PP4_RS10385 ba765d4ab1aec19ae842315846069a9a 499 Gene3D G3DSA:3.30.43.10 14 110 1.2E-28 T 22-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 PP4_RS10385 ba765d4ab1aec19ae842315846069a9a 499 TIGRFAM TIGR00387 glcD: glycolate oxidase, subunit GlcD 59 470 3.7E-177 T 22-04-2016 IPR004490 Glycolate oxidase subunit GlcD GO:0008891|GO:0009339 PP4_RS10385 ba765d4ab1aec19ae842315846069a9a 499 SUPERFAMILY SSF56176 20 231 2.52E-67 T 22-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 PP4_RS10385 ba765d4ab1aec19ae842315846069a9a 499 Pfam PF01565 FAD binding domain 56 194 2.4E-38 T 22-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 PP4_RS13565 7bfca244b8c087e57b23e2748476e0d4 386 Gene3D G3DSA:1.20.140.10 221 386 1.1E-29 T 22-04-2016 PP4_RS13565 7bfca244b8c087e57b23e2748476e0d4 386 Gene3D G3DSA:1.10.540.10 1 118 1.6E-26 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS13565 7bfca244b8c087e57b23e2748476e0d4 386 PANTHER PTHR10909:SF229 1 386 4.2E-134 T 22-04-2016 PP4_RS13565 7bfca244b8c087e57b23e2748476e0d4 386 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 118 3.1E-21 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS13565 7bfca244b8c087e57b23e2748476e0d4 386 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 125 218 4.1E-21 T 22-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 PP4_RS13565 7bfca244b8c087e57b23e2748476e0d4 386 SUPERFAMILY SSF47203 230 384 4.67E-19 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS13565 7bfca244b8c087e57b23e2748476e0d4 386 PANTHER PTHR10909 1 386 4.2E-134 T 22-04-2016 PP4_RS13565 7bfca244b8c087e57b23e2748476e0d4 386 SUPERFAMILY SSF56645 2 239 6.41E-68 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 PP4_RS13565 7bfca244b8c087e57b23e2748476e0d4 386 Gene3D G3DSA:2.40.110.10 123 220 5.6E-33 T 22-04-2016 PP4_RS13565 7bfca244b8c087e57b23e2748476e0d4 386 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 230 382 6.0E-19 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS20265 3503f95aca249efbc1374309fe0515cc 394 Gene3D G3DSA:2.40.30.40 79 174 8.7E-25 T 22-04-2016 IPR023367 Peptidase M42, domain 2 PP4_RS20265 3503f95aca249efbc1374309fe0515cc 394 Pfam PF05343 M42 glutamyl aminopeptidase 54 342 1.2E-70 T 22-04-2016 IPR008007 Peptidase M42 PP4_RS20265 3503f95aca249efbc1374309fe0515cc 394 SUPERFAMILY SSF101821 79 191 2.9E-24 T 22-04-2016 PP4_RS20265 3503f95aca249efbc1374309fe0515cc 394 TIGRFAM TIGR03106 trio_M42_hydro: hydrolase, peptidase M42 family 9 350 3.8E-182 T 22-04-2016 IPR017537 Peptidase M42, hydrolase PP4_RS20265 3503f95aca249efbc1374309fe0515cc 394 Gene3D G3DSA:3.40.630.10 11 78 2.6E-50 T 22-04-2016 PP4_RS20265 3503f95aca249efbc1374309fe0515cc 394 Gene3D G3DSA:3.40.630.10 175 349 2.6E-50 T 22-04-2016 PP4_RS20265 3503f95aca249efbc1374309fe0515cc 394 SUPERFAMILY SSF53187 12 91 5.82E-45 T 22-04-2016 PP4_RS20265 3503f95aca249efbc1374309fe0515cc 394 SUPERFAMILY SSF53187 186 348 5.82E-45 T 22-04-2016 PP4_RS20265 3503f95aca249efbc1374309fe0515cc 394 PANTHER PTHR32481:SF7 8 361 1.2E-176 T 22-04-2016 PP4_RS20265 3503f95aca249efbc1374309fe0515cc 394 PANTHER PTHR32481 8 361 1.2E-176 T 22-04-2016 PP4_RS20265 3503f95aca249efbc1374309fe0515cc 394 PIRSF PIRSF001123 11 350 4.9E-27 T 22-04-2016 IPR008007 Peptidase M42 PP4_RS25710 922e0d62315fd14f9f5eeb952de579ee 190 SUPERFAMILY SSF51182 4 188 4.45E-58 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS25710 922e0d62315fd14f9f5eeb952de579ee 190 PANTHER PTHR37943:SF1 2 174 2.0E-52 T 22-04-2016 PP4_RS25710 922e0d62315fd14f9f5eeb952de579ee 190 Gene3D G3DSA:2.60.120.10 10 106 2.0E-38 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS25710 922e0d62315fd14f9f5eeb952de579ee 190 Gene3D G3DSA:2.60.120.10 107 190 6.9E-39 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS25710 922e0d62315fd14f9f5eeb952de579ee 190 Pfam PF05962 HutD 10 180 4.4E-55 T 22-04-2016 IPR010282 Uncharacterised protein family HutD/Ves PP4_RS25710 922e0d62315fd14f9f5eeb952de579ee 190 PANTHER PTHR37943 2 174 2.0E-52 T 22-04-2016 PP4_RS15460 5ad85cbf026cf80df27207d464282e5f 314 SUPERFAMILY SSF53850 87 286 4.65E-35 T 22-04-2016 PP4_RS15460 5ad85cbf026cf80df27207d464282e5f 314 PANTHER PTHR30126:SF25 1 308 2.2E-134 T 22-04-2016 PP4_RS15460 5ad85cbf026cf80df27207d464282e5f 314 PANTHER PTHR30126 1 308 2.2E-134 T 22-04-2016 PP4_RS15460 5ad85cbf026cf80df27207d464282e5f 314 Gene3D G3DSA:3.40.190.10 89 181 1.6E-16 T 22-04-2016 PP4_RS15460 5ad85cbf026cf80df27207d464282e5f 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 8.4E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS15460 5ad85cbf026cf80df27207d464282e5f 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 8.4E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS15460 5ad85cbf026cf80df27207d464282e5f 314 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 8.4E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS15460 5ad85cbf026cf80df27207d464282e5f 314 SUPERFAMILY SSF46785 1 112 1.73E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS15460 5ad85cbf026cf80df27207d464282e5f 314 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 1.6E-16 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS15460 5ad85cbf026cf80df27207d464282e5f 314 Gene3D G3DSA:1.10.10.10 1 88 3.9E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS15460 5ad85cbf026cf80df27207d464282e5f 314 Pfam PF03466 LysR substrate binding domain 88 287 4.6E-36 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS15460 5ad85cbf026cf80df27207d464282e5f 314 Gene3D G3DSA:3.40.190.10 182 262 4.4E-15 T 22-04-2016 PP4_RS08515 1387d73175e01ca25a8c3f4f570f9129 84 PANTHER PTHR34040 1 79 6.9E-38 T 22-04-2016 PP4_RS08515 1387d73175e01ca25a8c3f4f570f9129 84 PIRSF PIRSF004669 1 84 2.7E-22 T 22-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 PP4_RS08515 1387d73175e01ca25a8c3f4f570f9129 84 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 37 52 1.2E-25 T 22-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 PP4_RS08515 1387d73175e01ca25a8c3f4f570f9129 84 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 16 37 1.2E-25 T 22-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 PP4_RS08515 1387d73175e01ca25a8c3f4f570f9129 84 PRINTS PR00952 Type III secretion system inner membrane Q protein family signature 52 74 1.2E-25 T 22-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 PP4_RS08515 1387d73175e01ca25a8c3f4f570f9129 84 Pfam PF01313 Bacterial export proteins, family 3 7 75 1.4E-23 T 22-04-2016 IPR002191 Bacterial export protein family 3 GO:0009306|GO:0016020 PP4_RS08515 1387d73175e01ca25a8c3f4f570f9129 84 PANTHER PTHR34040:SF3 1 79 6.9E-38 T 22-04-2016 PP4_RS08515 1387d73175e01ca25a8c3f4f570f9129 84 TIGRFAM TIGR01403 fliQ_rel_III: type III secretion protein, HrpO family 4 80 3.7E-29 T 22-04-2016 IPR006306 Type III secretion protein HrpO GO:0006810|GO:0016021 PP4_RS18205 a5bd4983b20c525a29e1d729c8c14aef 368 Pfam PF03969 AFG1-like ATPase 40 282 4.7E-79 T 22-04-2016 IPR005654 ATPase, AFG1-like GO:0005524 PP4_RS18205 a5bd4983b20c525a29e1d729c8c14aef 368 Pfam PF03969 AFG1-like ATPase 309 364 1.0E-15 T 22-04-2016 IPR005654 ATPase, AFG1-like GO:0005524 PP4_RS18205 a5bd4983b20c525a29e1d729c8c14aef 368 SUPERFAMILY SSF52540 29 174 9.49E-18 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS18205 a5bd4983b20c525a29e1d729c8c14aef 368 PANTHER PTHR12169 2 282 4.5E-129 T 22-04-2016 IPR005654 ATPase, AFG1-like GO:0005524 PP4_RS18205 a5bd4983b20c525a29e1d729c8c14aef 368 PANTHER PTHR12169 312 363 4.5E-129 T 22-04-2016 IPR005654 ATPase, AFG1-like GO:0005524 PP4_RS18205 a5bd4983b20c525a29e1d729c8c14aef 368 Gene3D G3DSA:3.40.50.300 6 153 1.4E-22 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS18205 a5bd4983b20c525a29e1d729c8c14aef 368 PANTHER PTHR12169:SF11 2 282 4.5E-129 T 22-04-2016 PP4_RS18205 a5bd4983b20c525a29e1d729c8c14aef 368 PANTHER PTHR12169:SF11 312 363 4.5E-129 T 22-04-2016 PP4_RS09305 7ea1ccab8e267fce15f6eafd82dde3ff 155 Gene3D G3DSA:2.60.120.10 32 152 2.2E-32 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS09305 7ea1ccab8e267fce15f6eafd82dde3ff 155 PANTHER PTHR33570 10 152 3.2E-51 T 22-04-2016 PP4_RS09305 7ea1ccab8e267fce15f6eafd82dde3ff 155 SUPERFAMILY SSF51182 33 153 4.89E-31 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS09305 7ea1ccab8e267fce15f6eafd82dde3ff 155 PANTHER PTHR33570:SF5 10 152 3.2E-51 T 22-04-2016 PP4_RS09305 7ea1ccab8e267fce15f6eafd82dde3ff 155 Pfam PF07883 Cupin domain 64 124 9.8E-13 T 22-04-2016 IPR013096 Cupin 2, conserved barrel PP4_RS20170 4075e4e8d0142c2be862bcb221a1aca7 361 Pfam PF00266 Aminotransferase class-V 6 349 1.3E-50 T 22-04-2016 IPR000192 Aminotransferase class V domain PP4_RS20170 4075e4e8d0142c2be862bcb221a1aca7 361 TIGRFAM TIGR01364 serC_1: phosphoserine transaminase 6 360 6.9E-163 T 22-04-2016 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|UniPathway: UPA00135|UniPathway: UPA00244 PP4_RS20170 4075e4e8d0142c2be862bcb221a1aca7 361 Hamap MF_00160 Phosphoserine aminotransferase [serC]. 3 360 51.531 T 22-04-2016 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|UniPathway: UPA00135|UniPathway: UPA00244 PP4_RS20170 4075e4e8d0142c2be862bcb221a1aca7 361 Gene3D G3DSA:3.90.1150.10 259 360 9.9E-41 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS20170 4075e4e8d0142c2be862bcb221a1aca7 361 PANTHER PTHR21152:SF1 2 361 5.4E-188 T 22-04-2016 PP4_RS20170 4075e4e8d0142c2be862bcb221a1aca7 361 PIRSF PIRSF000525 1 361 3.9E-149 T 22-04-2016 IPR022278 Phosphoserine aminotransferase GO:0004648|GO:0006564 KEGG: 00260+2.6.1.52|KEGG: 00680+2.6.1.52|KEGG: 00750+2.6.1.52|UniPathway: UPA00135|UniPathway: UPA00244 PP4_RS20170 4075e4e8d0142c2be862bcb221a1aca7 361 PANTHER PTHR21152 2 361 5.4E-188 T 22-04-2016 PP4_RS20170 4075e4e8d0142c2be862bcb221a1aca7 361 SUPERFAMILY SSF53383 4 359 1.85E-118 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS20170 4075e4e8d0142c2be862bcb221a1aca7 361 Gene3D G3DSA:3.40.640.10 19 258 4.0E-109 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS02500 6edcb6c8fe0e2b3fab0ef75102b811fc 103 ProSitePatterns PS00361 Ribosomal protein S10 signature. 29 44 - T 22-04-2016 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02500 6edcb6c8fe0e2b3fab0ef75102b811fc 103 SUPERFAMILY SSF54999 6 101 1.16E-36 T 22-04-2016 IPR027486 Ribosomal protein S10 domain PP4_RS02500 6edcb6c8fe0e2b3fab0ef75102b811fc 103 Pfam PF00338 Ribosomal protein S10p/S20e 7 100 1.9E-35 T 22-04-2016 IPR027486 Ribosomal protein S10 domain PP4_RS02500 6edcb6c8fe0e2b3fab0ef75102b811fc 103 SMART SM01403 7 101 1.7E-55 T 22-04-2016 IPR027486 Ribosomal protein S10 domain PP4_RS02500 6edcb6c8fe0e2b3fab0ef75102b811fc 103 PRINTS PR00971 Ribosomal protein S10 family signature 5 18 5.7E-18 T 22-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 PP4_RS02500 6edcb6c8fe0e2b3fab0ef75102b811fc 103 PRINTS PR00971 Ribosomal protein S10 family signature 40 55 5.7E-18 T 22-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 PP4_RS02500 6edcb6c8fe0e2b3fab0ef75102b811fc 103 PRINTS PR00971 Ribosomal protein S10 family signature 61 75 5.7E-18 T 22-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 PP4_RS02500 6edcb6c8fe0e2b3fab0ef75102b811fc 103 PANTHER PTHR11700 1 102 7.9E-54 T 22-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 PP4_RS02500 6edcb6c8fe0e2b3fab0ef75102b811fc 103 Gene3D G3DSA:3.30.70.600 3 102 1.0E-43 T 22-04-2016 IPR027486 Ribosomal protein S10 domain PP4_RS02500 6edcb6c8fe0e2b3fab0ef75102b811fc 103 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 3 102 27.096 T 22-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 PP4_RS02500 6edcb6c8fe0e2b3fab0ef75102b811fc 103 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 4 101 4.3E-46 T 22-04-2016 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 PP4_RS26000 a3bacc64e598cafd6d065204761f454c 228 ProSitePatterns PS01211 Uncharacterized protein family UPF0001 signature. 76 90 - T 22-04-2016 IPR011078 Uncharacterised protein family UPF0001 PP4_RS26000 a3bacc64e598cafd6d065204761f454c 228 PIRSF PIRSF004848 1 228 9.3E-72 T 22-04-2016 IPR011078 Uncharacterised protein family UPF0001 PP4_RS26000 a3bacc64e598cafd6d065204761f454c 228 Pfam PF01168 Alanine racemase, N-terminal domain 7 223 5.6E-36 T 22-04-2016 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383|UniPathway: UPA00042 PP4_RS26000 a3bacc64e598cafd6d065204761f454c 228 Gene3D G3DSA:3.20.20.10 1 227 1.3E-95 T 22-04-2016 IPR029066 PLP-binding barrel PP4_RS26000 a3bacc64e598cafd6d065204761f454c 228 SUPERFAMILY SSF51419 1 221 1.83E-81 T 22-04-2016 IPR029066 PLP-binding barrel PP4_RS26000 a3bacc64e598cafd6d065204761f454c 228 PANTHER PTHR10146 1 225 4.5E-106 T 22-04-2016 IPR011078 Uncharacterised protein family UPF0001 PP4_RS26000 a3bacc64e598cafd6d065204761f454c 228 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 1 223 6.8E-76 T 22-04-2016 IPR011078 Uncharacterised protein family UPF0001 PP4_RS02660 fd3df6179a299d403e9063c6cd85bdf1 183 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 2 183 1.3E-57 T 22-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 PP4_RS02660 fd3df6179a299d403e9063c6cd85bdf1 183 Gene3D G3DSA:2.40.50.140 1 125 3.4E-52 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS02660 fd3df6179a299d403e9063c6cd85bdf1 183 Gene3D G3DSA:2.40.50.140 163 183 3.4E-52 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS02660 fd3df6179a299d403e9063c6cd85bdf1 183 SUPERFAMILY SSF50249 3 183 3.43E-60 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS02660 fd3df6179a299d403e9063c6cd85bdf1 183 PIRSF PIRSF002070 1 183 5.5E-33 T 22-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 PP4_RS02660 fd3df6179a299d403e9063c6cd85bdf1 183 Hamap MF_00984 Single-stranded DNA-binding protein. 5 115 36.37 T 22-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 PP4_RS02660 fd3df6179a299d403e9063c6cd85bdf1 183 PANTHER PTHR10302 1 183 2.9E-51 T 22-04-2016 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 PP4_RS02660 fd3df6179a299d403e9063c6cd85bdf1 183 Pfam PF00436 Single-strand binding protein family 5 108 3.5E-37 T 22-04-2016 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 PP4_RS13610 63ac55458501d3b5a6bd44c10a3c0891 558 SUPERFAMILY SSF56935 217 525 8.74E-5 T 22-04-2016 PP4_RS13610 63ac55458501d3b5a6bd44c10a3c0891 558 Pfam PF06980 Protein of unknown function (DUF1302) 39 558 8.2E-110 T 22-04-2016 IPR010727 Protein of unknown function DUF1302 PP4_RS19290 8ee9d85f184775f70ffa02cf98031400 221 SUPERFAMILY SSF110997 146 217 2.22E-17 T 22-04-2016 IPR007730 Sporulation-related domain GO:0042834 PP4_RS19290 8ee9d85f184775f70ffa02cf98031400 221 Gene3D G3DSA:3.30.70.1070 145 218 2.3E-21 T 22-04-2016 IPR007730 Sporulation-related domain GO:0042834 PP4_RS19290 8ee9d85f184775f70ffa02cf98031400 221 PANTHER PTHR38687 5 221 2.0E-37 T 22-04-2016 PP4_RS19290 8ee9d85f184775f70ffa02cf98031400 221 Pfam PF05036 Sporulation related domain 146 215 7.1E-16 T 22-04-2016 IPR007730 Sporulation-related domain GO:0042834 PP4_RS19290 8ee9d85f184775f70ffa02cf98031400 221 PANTHER PTHR38687:SF1 5 221 2.0E-37 T 22-04-2016 PP4_RS11865 3498da5f31ccac91908be2c20d7c1e2a 443 Pfam PF00589 Phage integrase family 224 394 1.2E-12 T 22-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 PP4_RS11865 3498da5f31ccac91908be2c20d7c1e2a 443 Gene3D G3DSA:1.10.443.10 223 407 1.1E-23 T 22-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 PP4_RS11865 3498da5f31ccac91908be2c20d7c1e2a 443 SUPERFAMILY SSF56349 114 413 1.29E-52 T 22-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 PP4_RS11865 3498da5f31ccac91908be2c20d7c1e2a 443 Gene3D G3DSA:1.10.150.130 114 202 3.1E-12 T 22-04-2016 IPR023109 Integrase/recombinase, N-terminal PP4_RS11865 3498da5f31ccac91908be2c20d7c1e2a 443 PANTHER PTHR30629 40 307 2.5E-61 T 22-04-2016 PP4_RS11865 3498da5f31ccac91908be2c20d7c1e2a 443 PANTHER PTHR30629 325 423 2.5E-61 T 22-04-2016 PP4_RS11865 3498da5f31ccac91908be2c20d7c1e2a 443 PANTHER PTHR30629:SF2 40 307 2.5E-61 T 22-04-2016 PP4_RS11865 3498da5f31ccac91908be2c20d7c1e2a 443 PANTHER PTHR30629:SF2 325 423 2.5E-61 T 22-04-2016 PP4_RS11865 3498da5f31ccac91908be2c20d7c1e2a 443 Pfam PF14659 Phage integrase, N-terminal SAM-like domain 114 165 3.7E-5 T 22-04-2016 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 PP4_RS11865 3498da5f31ccac91908be2c20d7c1e2a 443 Pfam PF13356 Domain of unknown function (DUF4102) 33 101 2.9E-8 T 22-04-2016 IPR025166 Domain of unknown function DUF4102 PP4_RS24865 09d2fb1a9ec5c37701fa5b52e77b44d8 291 ProSitePatterns PS00211 ABC transporters family signature. 185 199 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS24865 09d2fb1a9ec5c37701fa5b52e77b44d8 291 Pfam PF00005 ABC transporter 22 212 2.3E-26 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS24865 09d2fb1a9ec5c37701fa5b52e77b44d8 291 Gene3D G3DSA:3.40.50.300 3 283 1.3E-64 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS24865 09d2fb1a9ec5c37701fa5b52e77b44d8 291 SMART SM00382 31 262 1.4E-10 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS24865 09d2fb1a9ec5c37701fa5b52e77b44d8 291 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 263 284 4.0E-11 T 22-04-2016 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal PP4_RS24865 09d2fb1a9ec5c37701fa5b52e77b44d8 291 PANTHER PTHR24220 152 289 8.7E-115 T 22-04-2016 PP4_RS24865 09d2fb1a9ec5c37701fa5b52e77b44d8 291 PANTHER PTHR24220 103 136 8.7E-115 T 22-04-2016 PP4_RS24865 09d2fb1a9ec5c37701fa5b52e77b44d8 291 PANTHER PTHR24220 8 65 8.7E-115 T 22-04-2016 PP4_RS24865 09d2fb1a9ec5c37701fa5b52e77b44d8 291 PANTHER PTHR24220:SF358 152 289 8.7E-115 T 22-04-2016 PP4_RS24865 09d2fb1a9ec5c37701fa5b52e77b44d8 291 PANTHER PTHR24220:SF358 103 136 8.7E-115 T 22-04-2016 PP4_RS24865 09d2fb1a9ec5c37701fa5b52e77b44d8 291 PANTHER PTHR24220:SF358 8 65 8.7E-115 T 22-04-2016 PP4_RS24865 09d2fb1a9ec5c37701fa5b52e77b44d8 291 SUPERFAMILY SSF52540 3 67 1.84E-58 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS24865 09d2fb1a9ec5c37701fa5b52e77b44d8 291 SUPERFAMILY SSF52540 100 284 1.84E-58 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS21000 f42c58c3e22a4ee3669c441da79ffa7f 167 SMART SM00935 10 164 6.6E-37 T 22-04-2016 IPR005632 Chaperone protein Skp GO:0051082 PP4_RS21000 f42c58c3e22a4ee3669c441da79ffa7f 167 Gene3D G3DSA:3.30.910.20 96 164 2.2E-16 T 22-04-2016 PP4_RS21000 f42c58c3e22a4ee3669c441da79ffa7f 167 Gene3D G3DSA:3.30.910.20 12 58 2.2E-16 T 22-04-2016 PP4_RS21000 f42c58c3e22a4ee3669c441da79ffa7f 167 SUPERFAMILY SSF111384 21 164 9.68E-30 T 22-04-2016 IPR024930 Skp domain PP4_RS21000 f42c58c3e22a4ee3669c441da79ffa7f 167 PANTHER PTHR35089 2 167 4.4E-41 T 22-04-2016 PP4_RS21000 f42c58c3e22a4ee3669c441da79ffa7f 167 PANTHER PTHR35089:SF1 2 167 4.4E-41 T 22-04-2016 PP4_RS21000 f42c58c3e22a4ee3669c441da79ffa7f 167 Pfam PF03938 Outer membrane protein (OmpH-like) 8 163 1.3E-22 T 22-04-2016 IPR005632 Chaperone protein Skp GO:0051082 PP4_RS00670 bfb5466e2483582691c708ba830d3a6a 377 PANTHER PTHR30188:SF3 37 377 2.4E-156 T 22-04-2016 PP4_RS00670 bfb5466e2483582691c708ba830d3a6a 377 Pfam PF02405 Permease MlaE 161 370 1.4E-68 T 22-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 PP4_RS00670 bfb5466e2483582691c708ba830d3a6a 377 PANTHER PTHR30188 37 377 2.4E-156 T 22-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 PP4_RS00670 bfb5466e2483582691c708ba830d3a6a 377 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 124 373 6.6E-70 T 22-04-2016 IPR003453 ABC transport permease subunit MlaE, Proteobacteria PP4_RS00670 bfb5466e2483582691c708ba830d3a6a 377 Pfam PF13466 STAS domain 20 73 9.7E-8 T 22-04-2016 IPR002645 STAS domain PP4_RS22225 d28fe3ca4edb081e8e0ea9b6b84f2db2 851 Pfam PF00175 Oxidoreductase NAD-binding domain 720 824 1.1E-12 T 22-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 PP4_RS22225 d28fe3ca4edb081e8e0ea9b6b84f2db2 851 PANTHER PTHR19384 371 851 7.5E-96 T 22-04-2016 PP4_RS22225 d28fe3ca4edb081e8e0ea9b6b84f2db2 851 PRINTS PR00369 Flavodoxin signature 474 484 5.2E-6 T 22-04-2016 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 PP4_RS22225 d28fe3ca4edb081e8e0ea9b6b84f2db2 851 PRINTS PR00369 Flavodoxin signature 443 454 5.2E-6 T 22-04-2016 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 PP4_RS22225 d28fe3ca4edb081e8e0ea9b6b84f2db2 851 PRINTS PR00369 Flavodoxin signature 395 408 5.2E-6 T 22-04-2016 IPR001094 Flavodoxin-like GO:0010181|GO:0055114 PP4_RS22225 d28fe3ca4edb081e8e0ea9b6b84f2db2 851 Pfam PF03929 PepSY-associated TM region 7 370 1.1E-61 T 22-04-2016 IPR005625 PepSY-associated TM protein PP4_RS22225 d28fe3ca4edb081e8e0ea9b6b84f2db2 851 Gene3D G3DSA:3.40.50.360 392 533 5.8E-38 T 22-04-2016 IPR029039 Flavoprotein-like domain PP4_RS22225 d28fe3ca4edb081e8e0ea9b6b84f2db2 851 SUPERFAMILY SSF52218 394 534 2.65E-38 T 22-04-2016 IPR029039 Flavoprotein-like domain PP4_RS22225 d28fe3ca4edb081e8e0ea9b6b84f2db2 851 SUPERFAMILY SSF63380 539 710 1.57E-21 T 22-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 PP4_RS22225 d28fe3ca4edb081e8e0ea9b6b84f2db2 851 Pfam PF00258 Flavodoxin 396 524 1.3E-25 T 22-04-2016 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 PP4_RS22225 d28fe3ca4edb081e8e0ea9b6b84f2db2 851 SUPERFAMILY SSF52343 708 851 5.37E-37 T 22-04-2016 PP4_RS22225 d28fe3ca4edb081e8e0ea9b6b84f2db2 851 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 743 752 6.8E-12 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS22225 d28fe3ca4edb081e8e0ea9b6b84f2db2 851 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 719 738 6.8E-12 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS22225 d28fe3ca4edb081e8e0ea9b6b84f2db2 851 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 787 803 6.8E-12 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS22225 d28fe3ca4edb081e8e0ea9b6b84f2db2 851 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 580 590 6.8E-12 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS22225 d28fe3ca4edb081e8e0ea9b6b84f2db2 851 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 756 767 6.8E-12 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS22225 d28fe3ca4edb081e8e0ea9b6b84f2db2 851 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 810 818 6.8E-12 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS22225 d28fe3ca4edb081e8e0ea9b6b84f2db2 851 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 655 662 6.8E-12 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS22225 d28fe3ca4edb081e8e0ea9b6b84f2db2 851 Gene3D G3DSA:2.40.30.10 652 716 1.4E-8 T 22-04-2016 PP4_RS22225 d28fe3ca4edb081e8e0ea9b6b84f2db2 851 Gene3D G3DSA:2.40.30.10 552 590 1.4E-8 T 22-04-2016 PP4_RS22225 d28fe3ca4edb081e8e0ea9b6b84f2db2 851 Gene3D G3DSA:3.40.50.80 717 850 1.8E-38 T 22-04-2016 PP4_RS18965 bb32e7abd6ff6be06f097e5c20777c2d 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 63 8.0E-17 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS18965 bb32e7abd6ff6be06f097e5c20777c2d 301 SUPERFAMILY SSF46785 3 80 1.74E-16 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS18965 bb32e7abd6ff6be06f097e5c20777c2d 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 1.1E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS18965 bb32e7abd6ff6be06f097e5c20777c2d 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 1.1E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS18965 bb32e7abd6ff6be06f097e5c20777c2d 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 1.1E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS18965 bb32e7abd6ff6be06f097e5c20777c2d 301 Pfam PF03466 LysR substrate binding domain 91 290 1.6E-37 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS18965 bb32e7abd6ff6be06f097e5c20777c2d 301 Gene3D G3DSA:1.10.10.10 4 89 5.2E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS18965 bb32e7abd6ff6be06f097e5c20777c2d 301 PANTHER PTHR30427 1 299 1.2E-105 T 22-04-2016 PP4_RS18965 bb32e7abd6ff6be06f097e5c20777c2d 301 SUPERFAMILY SSF53850 92 296 1.71E-37 T 22-04-2016 PP4_RS18965 bb32e7abd6ff6be06f097e5c20777c2d 301 Gene3D G3DSA:3.40.190.10 181 261 4.7E-20 T 22-04-2016 PP4_RS18965 bb32e7abd6ff6be06f097e5c20777c2d 301 Gene3D G3DSA:3.40.190.10 91 180 3.7E-18 T 22-04-2016 PP4_RS18965 bb32e7abd6ff6be06f097e5c20777c2d 301 PANTHER PTHR30427:SF1 1 299 1.2E-105 T 22-04-2016 PP4_RS18265 0ad1902fcb2476048f8ec7da0440ff84 287 SUPERFAMILY SSF52402 134 275 1.42E-12 T 22-04-2016 PP4_RS18265 0ad1902fcb2476048f8ec7da0440ff84 287 Pfam PF00582 Universal stress protein family 5 125 2.3E-6 T 22-04-2016 IPR006016 UspA GO:0006950 PP4_RS18265 0ad1902fcb2476048f8ec7da0440ff84 287 Pfam PF00582 Universal stress protein family 134 273 1.4E-9 T 22-04-2016 IPR006016 UspA GO:0006950 PP4_RS18265 0ad1902fcb2476048f8ec7da0440ff84 287 Gene3D G3DSA:3.40.50.620 119 273 1.5E-15 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS18265 0ad1902fcb2476048f8ec7da0440ff84 287 SUPERFAMILY SSF52402 2 125 5.44E-16 T 22-04-2016 PP4_RS18265 0ad1902fcb2476048f8ec7da0440ff84 287 PANTHER PTHR31964:SF41 118 276 5.5E-45 T 22-04-2016 PP4_RS18265 0ad1902fcb2476048f8ec7da0440ff84 287 Gene3D G3DSA:3.40.50.620 2 118 2.7E-11 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS18265 0ad1902fcb2476048f8ec7da0440ff84 287 PANTHER PTHR31964 118 276 5.5E-45 T 22-04-2016 PP4_RS04680 96ac8292baf641e6abde22b12acf7d51 491 Gene3D G3DSA:3.40.50.300 207 385 8.1E-52 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS04680 96ac8292baf641e6abde22b12acf7d51 491 Gene3D G3DSA:3.40.50.300 6 111 8.1E-52 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS04680 96ac8292baf641e6abde22b12acf7d51 491 Pfam PF05872 Bacterial protein of unknown function (DUF853) 11 491 8.4E-213 T 22-04-2016 IPR033186 Helicase HerA-like C-terminal PP4_RS04680 96ac8292baf641e6abde22b12acf7d51 491 PANTHER PTHR30121 2 445 1.3E-160 T 22-04-2016 PP4_RS04680 96ac8292baf641e6abde22b12acf7d51 491 PANTHER PTHR30121:SF3 2 445 1.3E-160 T 22-04-2016 PP4_RS04680 96ac8292baf641e6abde22b12acf7d51 491 SUPERFAMILY SSF52540 5 387 7.72E-49 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS04680 96ac8292baf641e6abde22b12acf7d51 491 Gene3D G3DSA:1.10.238.10 128 190 7.1E-4 T 22-04-2016 IPR011992 EF-hand domain pair PP4_RS17205 22044e67d5ed686e970f882b8b2d681d 262 PANTHER PTHR40045 27 246 4.0E-36 T 22-04-2016 PP4_RS17205 22044e67d5ed686e970f882b8b2d681d 262 Pfam PF08892 YqcI/YcgG family 35 247 6.9E-60 T 22-04-2016 IPR014988 Uncharacterised protein family, YqcI/YcgG PP4_RS16715 9586ec1d5a8ef719a87ec208cd7d4522 353 Gene3D G3DSA:3.40.190.10 102 259 2.6E-25 T 22-04-2016 PP4_RS16715 9586ec1d5a8ef719a87ec208cd7d4522 353 Pfam PF09084 NMT1/THI5 like 83 270 1.2E-6 T 22-04-2016 IPR015168 SsuA/THI5-like PP4_RS16715 9586ec1d5a8ef719a87ec208cd7d4522 353 SUPERFAMILY SSF53850 78 285 2.33E-19 T 22-04-2016 PP4_RS07980 0d806dfc4cd52fe56101dbb9b048ba19 124 Pfam PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit 2 118 9.6E-31 T 22-04-2016 IPR000701 Succinate dehydrogenase/Fumarate reductase, transmembrane subunit GO:0016627 UniPathway: UPA00223 PP4_RS07980 0d806dfc4cd52fe56101dbb9b048ba19 124 TIGRFAM TIGR02970 succ_dehyd_cytB: succinate dehydrogenase, cytochrome b556 subunit 4 122 3.5E-41 T 22-04-2016 IPR014314 Succinate dehydrogenase, cytochrome b556 subunit GO:0000104|GO:0006099|GO:0045281 UniPathway: UPA00223 PP4_RS07980 0d806dfc4cd52fe56101dbb9b048ba19 124 PANTHER PTHR10978 1 124 3.4E-65 T 22-04-2016 PP4_RS07980 0d806dfc4cd52fe56101dbb9b048ba19 124 PANTHER PTHR10978:SF4 1 124 3.4E-65 T 22-04-2016 PP4_RS07980 0d806dfc4cd52fe56101dbb9b048ba19 124 ProSitePatterns PS01000 Succinate dehydrogenase cytochrome b subunit signature 1. 5 29 - T 22-04-2016 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 UniPathway: UPA00223 PP4_RS07980 0d806dfc4cd52fe56101dbb9b048ba19 124 Gene3D G3DSA:1.20.1300.10 2 124 3.9E-41 T 22-04-2016 PP4_RS07980 0d806dfc4cd52fe56101dbb9b048ba19 124 PIRSF PIRSF000178 1 124 4.2E-31 T 22-04-2016 PP4_RS07980 0d806dfc4cd52fe56101dbb9b048ba19 124 SUPERFAMILY SSF81343 2 124 7.03E-35 T 22-04-2016 PP4_RS07980 0d806dfc4cd52fe56101dbb9b048ba19 124 ProSitePatterns PS01001 Succinate dehydrogenase cytochrome b subunit signature 2. 80 93 - T 22-04-2016 IPR018495 Succinate dehydrogenase, cytochrome b subunit, conserved site GO:0000104|GO:0006099|GO:0009055|GO:0016020 UniPathway: UPA00223 PP4_RS04515 c23ec587955062e396e615c5357a47f8 684 SUPERFAMILY SSF141868 427 677 2.09E-93 T 22-04-2016 IPR001633 EAL domain PP4_RS04515 c23ec587955062e396e615c5357a47f8 684 SMART SM00052 422 668 4.6E-117 T 22-04-2016 IPR001633 EAL domain PP4_RS04515 c23ec587955062e396e615c5357a47f8 684 Gene3D G3DSA:3.30.70.270 252 420 1.0E-42 T 22-04-2016 PP4_RS04515 c23ec587955062e396e615c5357a47f8 684 Pfam PF00563 EAL domain 428 663 4.3E-77 T 22-04-2016 IPR001633 EAL domain PP4_RS04515 c23ec587955062e396e615c5357a47f8 684 Pfam PF00990 Diguanylate cyclase, GGDEF domain 250 408 1.5E-35 T 22-04-2016 IPR000160 GGDEF domain PP4_RS04515 c23ec587955062e396e615c5357a47f8 684 Gene3D G3DSA:3.20.20.450 425 676 1.6E-101 T 22-04-2016 IPR001633 EAL domain PP4_RS04515 c23ec587955062e396e615c5357a47f8 684 PANTHER PTHR33121 372 681 1.4E-97 T 22-04-2016 PP4_RS04515 c23ec587955062e396e615c5357a47f8 684 PANTHER PTHR33121:SF13 372 681 1.4E-97 T 22-04-2016 PP4_RS04515 c23ec587955062e396e615c5357a47f8 684 SMART SM00267 239 412 4.8E-43 T 22-04-2016 IPR000160 GGDEF domain PP4_RS04515 c23ec587955062e396e615c5357a47f8 684 PANTHER PTHR33121:SF13 33 42 1.4E-97 T 22-04-2016 PP4_RS04515 c23ec587955062e396e615c5357a47f8 684 SUPERFAMILY SSF55073 255 412 1.65E-35 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS04515 c23ec587955062e396e615c5357a47f8 684 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 246 410 4.8E-30 T 22-04-2016 IPR000160 GGDEF domain PP4_RS04515 c23ec587955062e396e615c5357a47f8 684 PANTHER PTHR33121 33 42 1.4E-97 T 22-04-2016 PP4_RS07925 4dbeec5edfa392611292b7862ee34388 554 PANTHER PTHR10617:SF107 2 477 8.6E-245 T 22-04-2016 IPR007859 ETF-QO/FixX GO:0051536|GO:0055114 PP4_RS07925 4dbeec5edfa392611292b7862ee34388 554 Pfam PF13450 NAD(P)-binding Rossmann-like domain 12 57 2.2E-7 T 22-04-2016 PP4_RS07925 4dbeec5edfa392611292b7862ee34388 554 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 180 195 9.5E-7 T 22-04-2016 PP4_RS07925 4dbeec5edfa392611292b7862ee34388 554 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 9 31 9.5E-7 T 22-04-2016 PP4_RS07925 4dbeec5edfa392611292b7862ee34388 554 PANTHER PTHR10617 2 477 8.6E-245 T 22-04-2016 PP4_RS07925 4dbeec5edfa392611292b7862ee34388 554 Pfam PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S 450 551 1.2E-50 T 22-04-2016 IPR007859 ETF-QO/FixX GO:0051536|GO:0055114 PP4_RS07925 4dbeec5edfa392611292b7862ee34388 554 SUPERFAMILY SSF54862 454 554 3.14E-28 T 22-04-2016 PP4_RS07925 4dbeec5edfa392611292b7862ee34388 554 SUPERFAMILY SSF51905 311 452 2.78E-58 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS07925 4dbeec5edfa392611292b7862ee34388 554 SUPERFAMILY SSF51905 5 212 2.78E-58 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS07925 4dbeec5edfa392611292b7862ee34388 554 Gene3D G3DSA:3.50.50.60 6 286 3.1E-43 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS07925 4dbeec5edfa392611292b7862ee34388 554 Gene3D G3DSA:3.30.70.20 497 540 7.4E-4 T 22-04-2016 PP4_RS07925 4dbeec5edfa392611292b7862ee34388 554 SUPERFAMILY SSF54373 212 310 6.28E-35 T 22-04-2016 PP4_RS06590 857f3767893cb9fca57b0f5b1f1d9d66 100 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 19 90 1.4E-5 T 22-04-2016 IPR009241 Toxin HigB-like PP4_RS06590 857f3767893cb9fca57b0f5b1f1d9d66 100 PANTHER PTHR41791:SF1 1 98 3.4E-24 T 22-04-2016 PP4_RS06590 857f3767893cb9fca57b0f5b1f1d9d66 100 PIRSF PIRSF028744 1 100 3.6E-39 T 22-04-2016 IPR014056 Addiction module killer protein, predicted PP4_RS06590 857f3767893cb9fca57b0f5b1f1d9d66 100 TIGRFAM TIGR02683 upstrm_HI1419: putative addiction module killer protein 5 95 1.4E-37 T 22-04-2016 IPR014056 Addiction module killer protein, predicted PP4_RS06590 857f3767893cb9fca57b0f5b1f1d9d66 100 PANTHER PTHR41791 1 98 3.4E-24 T 22-04-2016 PP4_RS19485 434837a287b971a5fc0d214dccb83c58 396 PANTHER PTHR30518:SF2 1 341 1.7E-90 T 22-04-2016 PP4_RS19485 434837a287b971a5fc0d214dccb83c58 396 Pfam PF02618 YceG-like family 44 328 4.9E-77 T 22-04-2016 IPR003770 Uncharacterised protein family UPF0755, YceG-like PP4_RS19485 434837a287b971a5fc0d214dccb83c58 396 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 3 330 1.4E-80 T 22-04-2016 IPR003770 Uncharacterised protein family UPF0755, YceG-like PP4_RS19485 434837a287b971a5fc0d214dccb83c58 396 PANTHER PTHR30518 1 341 1.7E-90 T 22-04-2016 PP4_RS19485 434837a287b971a5fc0d214dccb83c58 396 Gene3D G3DSA:3.30.160.60 304 335 2.3E-16 T 22-04-2016 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain GO:0003676 PP4_RS22190 8727ba02cfd6f0f790726e37257a5f6a 320 Pfam PF16344 Domain of unknown function (DUF4974) 219 308 1.1E-7 T 22-04-2016 IPR032508 Protein FecR, C-terminal PP4_RS22190 8727ba02cfd6f0f790726e37257a5f6a 320 PANTHER PTHR30273 3 320 3.6E-63 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS22190 8727ba02cfd6f0f790726e37257a5f6a 320 Pfam PF16220 Domain of unknown function (DUF4880) 11 53 1.3E-10 T 22-04-2016 IPR032623 FecR, N-terminal PP4_RS22190 8727ba02cfd6f0f790726e37257a5f6a 320 PIRSF PIRSF018266 1 320 2.1E-90 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS22190 8727ba02cfd6f0f790726e37257a5f6a 320 Pfam PF04773 FecR protein 114 205 9.2E-24 T 22-04-2016 IPR006860 FecR protein PP4_RS22190 8727ba02cfd6f0f790726e37257a5f6a 320 PANTHER PTHR30273:SF2 3 320 3.6E-63 T 22-04-2016 PP4_RS24730 6454ad03ae87194aabdba64acc0634c3 161 Pfam PF04314 Protein of unknown function (DUF461) 30 141 1.0E-32 T 22-04-2016 IPR007410 DR1885-like metal-binding protein PP4_RS24730 6454ad03ae87194aabdba64acc0634c3 161 PANTHER PTHR36302 4 159 1.2E-25 T 22-04-2016 PP4_RS24730 6454ad03ae87194aabdba64acc0634c3 161 PANTHER PTHR36302:SF1 4 159 1.2E-25 T 22-04-2016 PP4_RS24730 6454ad03ae87194aabdba64acc0634c3 161 SUPERFAMILY SSF110087 1 150 6.54E-45 T 22-04-2016 IPR007410 DR1885-like metal-binding protein PP4_RS11805 817e05ddf0c4ee78b6545f4dd4d5edbc 339 Pfam PF01063 Amino-transferase class IV 56 292 7.9E-40 T 22-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 PP4_RS11805 817e05ddf0c4ee78b6545f4dd4d5edbc 339 TIGRFAM TIGR01123 ilvE_II: branched-chain amino acid aminotransferase 31 338 5.4E-134 T 22-04-2016 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|Reactome: REACT_13 PP4_RS11805 817e05ddf0c4ee78b6545f4dd4d5edbc 339 PANTHER PTHR11825:SF2 4 337 1.8E-152 T 22-04-2016 PP4_RS11805 817e05ddf0c4ee78b6545f4dd4d5edbc 339 PANTHER PTHR11825 4 337 1.8E-152 T 22-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 PP4_RS11805 817e05ddf0c4ee78b6545f4dd4d5edbc 339 Gene3D G3DSA:3.30.470.10 3 160 3.4E-66 T 22-04-2016 PP4_RS11805 817e05ddf0c4ee78b6545f4dd4d5edbc 339 SUPERFAMILY SSF56752 4 335 5.76E-103 T 22-04-2016 IPR001544 Aminotransferase class IV GO:0003824|GO:0008152 Reactome: REACT_13 PP4_RS11805 817e05ddf0c4ee78b6545f4dd4d5edbc 339 Gene3D G3DSA:3.20.10.10 161 324 4.2E-56 T 22-04-2016 PP4_RS11805 817e05ddf0c4ee78b6545f4dd4d5edbc 339 ProSitePatterns PS00770 Aminotransferases class-IV signature. 219 248 - T 22-04-2016 IPR018300 Aminotransferase, class IV, conserved site GO:0003824|GO:0008152 Reactome: REACT_13 PP4_RS11805 817e05ddf0c4ee78b6545f4dd4d5edbc 339 PIRSF PIRSF006468 1 339 5.2E-120 T 22-04-2016 IPR005786 Branched-chain amino acid aminotransferase II GO:0004084|GO:0009081 KEGG: 00270+2.6.1.42|KEGG: 00280+2.6.1.42|KEGG: 00290+2.6.1.42|KEGG: 00770+2.6.1.42|KEGG: 00966+2.6.1.42|MetaCyc: PWY-5057|MetaCyc: PWY-5076|MetaCyc: PWY-5078|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-5108|Reactome: REACT_13 PP4_RS02635 415397ed4ae8d633347de12b9c1ca97e 128 TIGRFAM TIGR00059 L17: ribosomal protein bL17 7 117 8.4E-46 T 22-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02635 415397ed4ae8d633347de12b9c1ca97e 128 ProSitePatterns PS01167 Ribosomal protein L17 signature. 34 56 - T 22-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02635 415397ed4ae8d633347de12b9c1ca97e 128 Gene3D G3DSA:3.90.1030.10 1 117 5.1E-49 T 22-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02635 415397ed4ae8d633347de12b9c1ca97e 128 Pfam PF01196 Ribosomal protein L17 20 116 1.9E-33 T 22-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02635 415397ed4ae8d633347de12b9c1ca97e 128 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 25.57 T 22-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02635 415397ed4ae8d633347de12b9c1ca97e 128 SUPERFAMILY SSF64263 1 119 4.84E-50 T 22-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02635 415397ed4ae8d633347de12b9c1ca97e 128 PANTHER PTHR14413 1 119 4.4E-63 T 22-04-2016 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS23885 a434437a2964b45633afe48db3de84be 513 Gene3D G3DSA:1.20.1250.20 7 187 1.7E-29 T 22-04-2016 PP4_RS23885 a434437a2964b45633afe48db3de84be 513 PANTHER PTHR23501:SF7 7 497 1.3E-111 T 22-04-2016 PP4_RS23885 a434437a2964b45633afe48db3de84be 513 Pfam PF07690 Major Facilitator Superfamily 13 403 2.7E-47 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS23885 a434437a2964b45633afe48db3de84be 513 SUPERFAMILY SSF103473 242 414 6.02E-59 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS23885 a434437a2964b45633afe48db3de84be 513 SUPERFAMILY SSF103473 471 502 6.02E-59 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS23885 a434437a2964b45633afe48db3de84be 513 SUPERFAMILY SSF103473 4 191 6.02E-59 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS23885 a434437a2964b45633afe48db3de84be 513 PANTHER PTHR23501 7 497 1.3E-111 T 22-04-2016 PP4_RS23885 a434437a2964b45633afe48db3de84be 513 Gene3D G3DSA:1.20.1250.20 252 415 2.5E-19 T 22-04-2016 PP4_RS23885 a434437a2964b45633afe48db3de84be 513 Gene3D G3DSA:1.20.1250.20 472 497 2.5E-19 T 22-04-2016 PP4_RS03485 b7dfa0b5b7a0e664b8e2cb9eaa03b20e 295 SUPERFAMILY SSF48179 162 293 4.87E-40 T 22-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PP4_RS03485 b7dfa0b5b7a0e664b8e2cb9eaa03b20e 295 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 2 161 7.6E-50 T 22-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 PP4_RS03485 b7dfa0b5b7a0e664b8e2cb9eaa03b20e 295 Gene3D G3DSA:1.10.1040.10 163 293 1.1E-47 T 22-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PP4_RS03485 b7dfa0b5b7a0e664b8e2cb9eaa03b20e 295 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 5 18 - T 22-04-2016 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 PP4_RS03485 b7dfa0b5b7a0e664b8e2cb9eaa03b20e 295 TIGRFAM TIGR01692 HIBADH: 3-hydroxyisobutyrate dehydrogenase 5 292 5.8E-133 T 22-04-2016 IPR011548 3-hydroxyisobutyrate dehydrogenase GO:0008442|GO:0051287|GO:0055114 KEGG: 00280+1.1.1.31|UniPathway: UPA00362 PP4_RS03485 b7dfa0b5b7a0e664b8e2cb9eaa03b20e 295 Gene3D G3DSA:3.40.50.720 1 162 7.9E-61 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS03485 b7dfa0b5b7a0e664b8e2cb9eaa03b20e 295 SUPERFAMILY SSF51735 1 161 2.56E-45 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS03485 b7dfa0b5b7a0e664b8e2cb9eaa03b20e 295 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 164 289 2.6E-35 T 22-04-2016 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 PP4_RS03485 b7dfa0b5b7a0e664b8e2cb9eaa03b20e 295 PIRSF PIRSF000103 1 295 2.5E-78 T 22-04-2016 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 PP4_RS03485 b7dfa0b5b7a0e664b8e2cb9eaa03b20e 295 PANTHER PTHR22981 1 294 3.1E-131 T 22-04-2016 PP4_RS05335 57a3a9bd5196e4d2e60b449ba7e755ef 552 PANTHER PTHR10459:SF10 141 550 7.8E-64 T 22-04-2016 PP4_RS05335 57a3a9bd5196e4d2e60b449ba7e755ef 552 SUPERFAMILY SSF50249 425 550 2.23E-28 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS05335 57a3a9bd5196e4d2e60b449ba7e755ef 552 TIGRFAM TIGR04120 DNA_lig_bact: DNA ligase, ATP-dependent, PP_1105 family 2 551 5.3E-216 T 22-04-2016 IPR026333 ATP-dependent DNA ligase, PP_1105 family PP4_RS05335 57a3a9bd5196e4d2e60b449ba7e755ef 552 Pfam PF01068 ATP dependent DNA ligase domain 214 420 1.6E-25 T 22-04-2016 IPR012310 DNA ligase, ATP-dependent, central GO:0003910|GO:0005524|GO:0006281|GO:0006310 Reactome: REACT_216 PP4_RS05335 57a3a9bd5196e4d2e60b449ba7e755ef 552 Gene3D G3DSA:3.30.1490.70 207 242 4.4E-14 T 22-04-2016 PP4_RS05335 57a3a9bd5196e4d2e60b449ba7e755ef 552 Gene3D G3DSA:3.30.1490.70 375 420 4.4E-14 T 22-04-2016 PP4_RS05335 57a3a9bd5196e4d2e60b449ba7e755ef 552 Gene3D G3DSA:2.40.50.140 425 551 2.0E-34 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS05335 57a3a9bd5196e4d2e60b449ba7e755ef 552 Gene3D G3DSA:3.30.470.30 243 362 1.6E-31 T 22-04-2016 PP4_RS05335 57a3a9bd5196e4d2e60b449ba7e755ef 552 Pfam PF04679 ATP dependent DNA ligase C terminal region 441 536 1.0E-8 T 22-04-2016 IPR012309 DNA ligase, ATP-dependent, C-terminal GO:0003910|GO:0006281|GO:0006310 Reactome: REACT_216 PP4_RS05335 57a3a9bd5196e4d2e60b449ba7e755ef 552 SUPERFAMILY SSF56091 208 420 1.05E-53 T 22-04-2016 PP4_RS05335 57a3a9bd5196e4d2e60b449ba7e755ef 552 PANTHER PTHR10459 141 550 7.8E-64 T 22-04-2016 PP4_RS05335 57a3a9bd5196e4d2e60b449ba7e755ef 552 ProSitePatterns PS00697 ATP-dependent DNA ligase AMP-binding site. 238 246 - T 22-04-2016 IPR016059 DNA ligase, ATP-dependent, conserved site GO:0003909|GO:0051103 Reactome: REACT_216 PP4_RS05335 57a3a9bd5196e4d2e60b449ba7e755ef 552 Pfam PF04675 DNA ligase N terminus 3 161 1.6E-16 T 22-04-2016 IPR012308 DNA ligase, ATP-dependent, N-terminal GO:0003677|GO:0003910|GO:0006281|GO:0006310 Reactome: REACT_216 PP4_RS10820 b5aa8b5f279de77b529371a0e5bd99f1 309 Gene3D G3DSA:3.40.190.10 176 263 2.2E-16 T 22-04-2016 PP4_RS10820 b5aa8b5f279de77b529371a0e5bd99f1 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 2.0E-14 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS10820 b5aa8b5f279de77b529371a0e5bd99f1 309 SUPERFAMILY SSF53850 94 294 1.63E-35 T 22-04-2016 PP4_RS10820 b5aa8b5f279de77b529371a0e5bd99f1 309 Gene3D G3DSA:3.40.190.10 94 175 2.6E-17 T 22-04-2016 PP4_RS10820 b5aa8b5f279de77b529371a0e5bd99f1 309 Gene3D G3DSA:1.10.10.10 3 89 1.4E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS10820 b5aa8b5f279de77b529371a0e5bd99f1 309 SUPERFAMILY SSF46785 2 112 7.62E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS10820 b5aa8b5f279de77b529371a0e5bd99f1 309 PANTHER PTHR30419 1 291 2.5E-67 T 22-04-2016 PP4_RS10820 b5aa8b5f279de77b529371a0e5bd99f1 309 PANTHER PTHR30419:SF2 1 291 2.5E-67 T 22-04-2016 PP4_RS10820 b5aa8b5f279de77b529371a0e5bd99f1 309 Pfam PF03466 LysR substrate binding domain 89 291 1.5E-33 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS13245 fc21d3a70f860da2e50fd07eb1ec14f4 175 Pfam PF16036 Chalcone isomerase-like 53 170 1.3E-11 T 22-04-2016 IPR016087 Chalcone isomerase GO:0016872 PP4_RS07865 1183aab90308b20513c04d05e6459c1b 85 Gene3D G3DSA:3.40.50.80 23 83 5.6E-17 T 22-04-2016 PP4_RS07865 1183aab90308b20513c04d05e6459c1b 85 Pfam PF04954 Siderophore-interacting protein 34 81 4.5E-14 T 22-04-2016 IPR007037 Siderophore-interacting protein PP4_RS07865 1183aab90308b20513c04d05e6459c1b 85 PANTHER PTHR30157 35 85 1.1E-14 T 22-04-2016 PP4_RS07865 1183aab90308b20513c04d05e6459c1b 85 PANTHER PTHR30157:SF0 35 85 1.1E-14 T 22-04-2016 PP4_RS10905 d31cbb43eab4da3f5fda7b6c1754a57a 304 Gene3D G3DSA:3.40.190.10 180 259 1.1E-6 T 22-04-2016 PP4_RS10905 d31cbb43eab4da3f5fda7b6c1754a57a 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 4.0E-19 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS10905 d31cbb43eab4da3f5fda7b6c1754a57a 304 Pfam PF03466 LysR substrate binding domain 89 293 2.5E-40 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS10905 d31cbb43eab4da3f5fda7b6c1754a57a 304 SUPERFAMILY SSF46785 7 112 2.83E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS10905 d31cbb43eab4da3f5fda7b6c1754a57a 304 Gene3D G3DSA:3.40.190.10 92 179 1.0E-20 T 22-04-2016 PP4_RS10905 d31cbb43eab4da3f5fda7b6c1754a57a 304 SUPERFAMILY SSF53850 89 296 4.89E-43 T 22-04-2016 PP4_RS10905 d31cbb43eab4da3f5fda7b6c1754a57a 304 PANTHER PTHR30537 1 297 6.9E-103 T 22-04-2016 PP4_RS10905 d31cbb43eab4da3f5fda7b6c1754a57a 304 Gene3D G3DSA:1.10.10.10 4 85 1.8E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS10905 d31cbb43eab4da3f5fda7b6c1754a57a 304 PANTHER PTHR30537:SF5 1 297 6.9E-103 T 22-04-2016 PP4_RS16885 4747abd0bc0f43c18d76fb237735b668 434 Pfam PF00083 Sugar (and other) transporter 15 226 1.0E-24 T 22-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 PP4_RS16885 4747abd0bc0f43c18d76fb237735b668 434 SUPERFAMILY SSF103473 8 427 3.66E-64 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS16885 4747abd0bc0f43c18d76fb237735b668 434 PANTHER PTHR23508:SF1 10 423 6.5E-150 T 22-04-2016 PP4_RS16885 4747abd0bc0f43c18d76fb237735b668 434 PANTHER PTHR23508 10 423 6.5E-150 T 22-04-2016 PP4_RS16885 4747abd0bc0f43c18d76fb237735b668 434 Gene3D G3DSA:1.20.1250.20 239 426 5.0E-19 T 22-04-2016 PP4_RS16885 4747abd0bc0f43c18d76fb237735b668 434 Gene3D G3DSA:1.20.1250.20 11 222 6.4E-24 T 22-04-2016 PP4_RS09555 c4bc219a18b61ed11756e038bdd12b5f 140 Gene3D G3DSA:3.30.1330.40 2 130 1.4E-27 T 22-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like PP4_RS09555 c4bc219a18b61ed11756e038bdd12b5f 140 PANTHER PTHR11803 9 140 1.8E-17 T 22-04-2016 IPR006175 YjgF/YER057c/UK114 family PP4_RS09555 c4bc219a18b61ed11756e038bdd12b5f 140 Pfam PF01042 Endoribonuclease L-PSP 13 125 1.4E-20 T 22-04-2016 IPR006175 YjgF/YER057c/UK114 family PP4_RS09555 c4bc219a18b61ed11756e038bdd12b5f 140 PANTHER PTHR11803:SF19 9 140 1.8E-17 T 22-04-2016 PP4_RS09555 c4bc219a18b61ed11756e038bdd12b5f 140 SUPERFAMILY SSF55298 4 127 1.73E-28 T 22-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like PP4_RS12315 e3eae30c44324c023deb7d155dcb532a 183 PANTHER PTHR30289 25 182 3.5E-29 T 22-04-2016 PP4_RS12315 e3eae30c44324c023deb7d155dcb532a 183 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 53 177 4.6E-26 T 22-04-2016 IPR005247 YbhB/YbcL PP4_RS12315 e3eae30c44324c023deb7d155dcb532a 183 SUPERFAMILY SSF49777 26 181 4.19E-40 T 22-04-2016 IPR008914 Phosphatidylethanolamine-binding protein PP4_RS12315 e3eae30c44324c023deb7d155dcb532a 183 Pfam PF01161 Phosphatidylethanolamine-binding protein 52 181 1.5E-31 T 22-04-2016 IPR008914 Phosphatidylethanolamine-binding protein PP4_RS12315 e3eae30c44324c023deb7d155dcb532a 183 Gene3D G3DSA:3.90.280.10 26 182 4.1E-41 T 22-04-2016 IPR008914 Phosphatidylethanolamine-binding protein PP4_RS23855 895e9dfbcf916020b652c43154a37b1a 269 SUPERFAMILY SSF52540 25 262 2.35E-77 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23855 895e9dfbcf916020b652c43154a37b1a 269 PANTHER PTHR24220 26 269 8.8E-122 T 22-04-2016 PP4_RS23855 895e9dfbcf916020b652c43154a37b1a 269 ProSitePatterns PS00211 ABC transporters family signature. 164 178 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS23855 895e9dfbcf916020b652c43154a37b1a 269 PANTHER PTHR24220:SF447 26 269 8.8E-122 T 22-04-2016 PP4_RS23855 895e9dfbcf916020b652c43154a37b1a 269 PIRSF PIRSF039085 21 268 1.1E-104 T 22-04-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 PP4_RS23855 895e9dfbcf916020b652c43154a37b1a 269 Pfam PF00005 ABC transporter 40 192 1.9E-35 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS23855 895e9dfbcf916020b652c43154a37b1a 269 Gene3D G3DSA:3.40.50.300 23 265 3.4E-84 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23855 895e9dfbcf916020b652c43154a37b1a 269 SMART SM00382 49 240 2.2E-18 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS05085 a6d0e18da55ca1d4d268e2b3f820ccbc 181 PANTHER PTHR33169 16 157 7.1E-25 T 22-04-2016 PP4_RS05085 a6d0e18da55ca1d4d268e2b3f820ccbc 181 Pfam PF03551 Transcriptional regulator PadR-like family 33 102 2.0E-18 T 22-04-2016 IPR005149 Transcription regulator PadR, N-terminal PP4_RS05085 a6d0e18da55ca1d4d268e2b3f820ccbc 181 Gene3D G3DSA:1.10.10.10 18 115 2.0E-27 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS05085 a6d0e18da55ca1d4d268e2b3f820ccbc 181 PANTHER PTHR33169:SF2 16 157 7.1E-25 T 22-04-2016 PP4_RS05085 a6d0e18da55ca1d4d268e2b3f820ccbc 181 SUPERFAMILY SSF46785 28 144 1.27E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16805 7517ecd3b1f7b4747c0927bd4773bd82 457 Pfam PF07690 Major Facilitator Superfamily 252 424 6.8E-10 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS16805 7517ecd3b1f7b4747c0927bd4773bd82 457 SUPERFAMILY SSF103473 9 431 1.26E-60 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS16805 7517ecd3b1f7b4747c0927bd4773bd82 457 Pfam PF00083 Sugar (and other) transporter 17 225 1.4E-20 T 22-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 PP4_RS16805 7517ecd3b1f7b4747c0927bd4773bd82 457 PANTHER PTHR23508:SF19 6 445 5.6E-242 T 22-04-2016 PP4_RS16805 7517ecd3b1f7b4747c0927bd4773bd82 457 Gene3D G3DSA:1.20.1250.20 15 218 5.9E-22 T 22-04-2016 PP4_RS16805 7517ecd3b1f7b4747c0927bd4773bd82 457 Gene3D G3DSA:1.20.1250.20 239 424 2.8E-19 T 22-04-2016 PP4_RS16805 7517ecd3b1f7b4747c0927bd4773bd82 457 ProSitePatterns PS00216 Sugar transport proteins signature 1. 294 310 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PP4_RS16805 7517ecd3b1f7b4747c0927bd4773bd82 457 PANTHER PTHR23508 6 445 5.6E-242 T 22-04-2016 PP4_RS21795 293a73b34b3838167ac346df637c663d 371 PANTHER PTHR33529:SF2 2 366 2.5E-107 T 22-04-2016 PP4_RS21795 293a73b34b3838167ac346df637c663d 371 TIGRFAM TIGR04407 LptF_YjgP: LPS export ABC transporter permease LptF 2 354 3.7E-118 T 22-04-2016 IPR030922 LPS export ABC transporter permease LptF GO:0043190|GO:0055085 PP4_RS21795 293a73b34b3838167ac346df637c663d 371 Pfam PF03739 Predicted permease YjgP/YjgQ family 5 353 1.1E-74 T 22-04-2016 IPR005495 Permease LptG/LptF-related GO:0016021 PP4_RS21795 293a73b34b3838167ac346df637c663d 371 PANTHER PTHR33529 2 366 2.5E-107 T 22-04-2016 PP4_RS18465 dd120b3a676a5269876603ef8d4dd7f9 85 Pfam PF10976 Protein of unknown function (DUF2790) 10 83 3.5E-29 T 22-04-2016 IPR021245 Protein of unknown function DUF2790 PP4_RS16750 e811d7ea8973e9322b91a954f3fa9259 747 Gene3D G3DSA:2.40.170.20 169 747 6.3E-96 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS16750 e811d7ea8973e9322b91a954f3fa9259 747 Pfam PF07715 TonB-dependent Receptor Plug Domain 51 159 9.0E-13 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS16750 e811d7ea8973e9322b91a954f3fa9259 747 Gene3D G3DSA:2.170.130.10 32 168 2.9E-29 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS16750 e811d7ea8973e9322b91a954f3fa9259 747 PANTHER PTHR32552:SF33 462 747 7.0E-95 T 22-04-2016 PP4_RS16750 e811d7ea8973e9322b91a954f3fa9259 747 PANTHER PTHR32552:SF33 21 445 7.0E-95 T 22-04-2016 PP4_RS16750 e811d7ea8973e9322b91a954f3fa9259 747 PANTHER PTHR32552 462 747 7.0E-95 T 22-04-2016 PP4_RS16750 e811d7ea8973e9322b91a954f3fa9259 747 PANTHER PTHR32552 21 445 7.0E-95 T 22-04-2016 PP4_RS16750 e811d7ea8973e9322b91a954f3fa9259 747 Pfam PF00593 TonB dependent receptor 487 744 4.3E-27 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS16750 e811d7ea8973e9322b91a954f3fa9259 747 ProSitePatterns PS00430 TonB-dependent receptor proteins signature 1. 1 45 - T 22-04-2016 IPR010916 TonB box, conserved site PP4_RS16750 e811d7ea8973e9322b91a954f3fa9259 747 SUPERFAMILY SSF56935 25 747 1.69E-122 T 22-04-2016 PP4_RS13725 95f3c8d02b6b838907575872dc5d708e 553 Gene3D G3DSA:3.50.50.60 256 319 4.8E-59 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS13725 95f3c8d02b6b838907575872dc5d708e 553 Gene3D G3DSA:3.50.50.60 478 538 4.8E-59 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS13725 95f3c8d02b6b838907575872dc5d708e 553 Gene3D G3DSA:3.50.50.60 9 213 4.8E-59 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS13725 95f3c8d02b6b838907575872dc5d708e 553 SUPERFAMILY SSF51905 481 538 1.38E-33 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS13725 95f3c8d02b6b838907575872dc5d708e 553 SUPERFAMILY SSF51905 256 324 1.38E-33 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS13725 95f3c8d02b6b838907575872dc5d708e 553 SUPERFAMILY SSF51905 14 131 1.38E-33 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS13725 95f3c8d02b6b838907575872dc5d708e 553 SUPERFAMILY SSF51905 158 213 1.38E-33 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS13725 95f3c8d02b6b838907575872dc5d708e 553 SUPERFAMILY SSF56425 327 465 7.67E-21 T 22-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain PP4_RS13725 95f3c8d02b6b838907575872dc5d708e 553 Pfam PF00890 FAD binding domain 20 510 7.1E-40 T 22-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain PP4_RS13725 95f3c8d02b6b838907575872dc5d708e 553 PANTHER PTHR11632 407 536 4.2E-32 T 22-04-2016 PP4_RS13725 95f3c8d02b6b838907575872dc5d708e 553 PANTHER PTHR11632 260 391 4.2E-32 T 22-04-2016 PP4_RS13725 95f3c8d02b6b838907575872dc5d708e 553 PANTHER PTHR11632 161 219 4.2E-32 T 22-04-2016 PP4_RS13725 95f3c8d02b6b838907575872dc5d708e 553 PANTHER PTHR11632 14 129 4.2E-32 T 22-04-2016 PP4_RS13725 95f3c8d02b6b838907575872dc5d708e 553 Gene3D G3DSA:3.90.700.10 328 465 8.1E-22 T 22-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain PP4_RS15935 805b83c15a66e79d63e8c3e438e2a46d 424 Gene3D G3DSA:3.30.565.10 332 422 8.7E-9 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS15935 805b83c15a66e79d63e8c3e438e2a46d 424 PANTHER PTHR24421:SF1 195 421 7.4E-45 T 22-04-2016 PP4_RS15935 805b83c15a66e79d63e8c3e438e2a46d 424 Pfam PF00672 HAMP domain 142 209 4.3E-8 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS15935 805b83c15a66e79d63e8c3e438e2a46d 424 SUPERFAMILY SSF55874 308 421 4.79E-18 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS15935 805b83c15a66e79d63e8c3e438e2a46d 424 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 336 413 2.8E-6 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS15935 805b83c15a66e79d63e8c3e438e2a46d 424 PANTHER PTHR24421 195 421 7.4E-45 T 22-04-2016 PP4_RS15935 805b83c15a66e79d63e8c3e438e2a46d 424 SMART SM00304 161 213 2.0E-5 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS15935 805b83c15a66e79d63e8c3e438e2a46d 424 Pfam PF07730 Histidine kinase 229 295 5.7E-12 T 22-04-2016 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 PP4_RS15935 805b83c15a66e79d63e8c3e438e2a46d 424 SMART SM00387 333 424 1.2E-5 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS23715 82d7afae73e30b485dac53902db54376 208 Pfam PF01728 FtsJ-like methyltransferase 29 205 3.9E-55 T 22-04-2016 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 PP4_RS23715 82d7afae73e30b485dac53902db54376 208 Hamap MF_01547 Ribosomal RNA large subunit methyltransferase E [rlmE]. 9 205 30.08 T 22-04-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 PP4_RS23715 82d7afae73e30b485dac53902db54376 208 Gene3D G3DSA:3.40.50.150 3 207 1.0E-69 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS23715 82d7afae73e30b485dac53902db54376 208 PANTHER PTHR10920 3 207 5.0E-125 T 22-04-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 PP4_RS23715 82d7afae73e30b485dac53902db54376 208 PANTHER PTHR10920:SF20 3 207 5.0E-125 T 22-04-2016 PP4_RS23715 82d7afae73e30b485dac53902db54376 208 PIRSF PIRSF005461 1 208 5.8E-80 T 22-04-2016 IPR015507 Ribosomal RNA large subunit methyltransferase E GO:0001510|GO:0008168 KEGG: 00564+2.1.1.16 PP4_RS23715 82d7afae73e30b485dac53902db54376 208 SUPERFAMILY SSF53335 28 207 6.31E-42 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS08950 559064f22d9f1fe00dca86abb105b910 130 Pfam PF02635 DsrE/DsrF-like family 1 127 1.2E-21 T 22-04-2016 IPR003787 Sulphur relay, DsrE/F-like protein PP4_RS08950 559064f22d9f1fe00dca86abb105b910 130 TIGRFAM TIGR03012 sulf_tusD_dsrE: sulfur relay protein TusD/DsrE 2 127 2.4E-45 T 22-04-2016 IPR017463 Sulphur relay, TusD/DsrE GO:0005737|GO:0008033|GO:0016783 PP4_RS08950 559064f22d9f1fe00dca86abb105b910 130 PANTHER PTHR34874 1 129 6.3E-49 T 22-04-2016 PP4_RS08950 559064f22d9f1fe00dca86abb105b910 130 PANTHER PTHR34874:SF1 1 129 6.3E-49 T 22-04-2016 PP4_RS08950 559064f22d9f1fe00dca86abb105b910 130 SUPERFAMILY SSF75169 1 127 6.87E-33 T 22-04-2016 IPR027396 DsrEFH-like PP4_RS08950 559064f22d9f1fe00dca86abb105b910 130 Gene3D G3DSA:3.40.1260.10 1 127 2.6E-18 T 22-04-2016 IPR027396 DsrEFH-like PP4_RS01895 916f27c26eb7b6bf810c9e6453483007 374 SUPERFAMILY SSF53756 4 363 3.45E-63 T 22-04-2016 PP4_RS01895 916f27c26eb7b6bf810c9e6453483007 374 Pfam PF00534 Glycosyl transferases group 1 184 348 1.4E-34 T 22-04-2016 IPR001296 Glycosyl transferase, family 1 PP4_RS01895 916f27c26eb7b6bf810c9e6453483007 374 PANTHER PTHR12526:SF220 79 352 7.7E-109 T 22-04-2016 PP4_RS01895 916f27c26eb7b6bf810c9e6453483007 374 PANTHER PTHR12526:SF220 1 55 7.7E-109 T 22-04-2016 PP4_RS01895 916f27c26eb7b6bf810c9e6453483007 374 Gene3D G3DSA:3.40.50.2000 154 348 1.3E-21 T 22-04-2016 PP4_RS01895 916f27c26eb7b6bf810c9e6453483007 374 PANTHER PTHR12526 79 352 7.7E-109 T 22-04-2016 PP4_RS01895 916f27c26eb7b6bf810c9e6453483007 374 PANTHER PTHR12526 1 55 7.7E-109 T 22-04-2016 PP4_RS05150 554b0c805b760b35ec6a7a050bc75a10 248 Gene3D G3DSA:1.10.3720.10 23 237 9.8E-49 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS05150 554b0c805b760b35ec6a7a050bc75a10 248 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 44 238 7.9E-25 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS05150 554b0c805b760b35ec6a7a050bc75a10 248 PANTHER PTHR30085 1 244 9.4E-142 T 22-04-2016 PP4_RS05150 554b0c805b760b35ec6a7a050bc75a10 248 SUPERFAMILY SSF161098 24 223 8.37E-42 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS05150 554b0c805b760b35ec6a7a050bc75a10 248 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 25 131 3.2E-18 T 22-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PP4_RS05150 554b0c805b760b35ec6a7a050bc75a10 248 PANTHER PTHR30085:SF4 1 244 9.4E-142 T 22-04-2016 IPR030202 Glutamate/aspartate transport system permease protein GltJ/AatQ GO:0006865|GO:0016021|GO:0043190 PP4_RS13620 93427a1f8477bcfca9a58f603133737a 621 SUPERFAMILY SSF56801 39 581 2.62E-99 T 22-04-2016 PP4_RS13620 93427a1f8477bcfca9a58f603133737a 621 Gene3D G3DSA:3.30.300.30 485 577 1.3E-4 T 22-04-2016 PP4_RS13620 93427a1f8477bcfca9a58f603133737a 621 Gene3D G3DSA:3.40.50.980 45 222 1.7E-33 T 22-04-2016 PP4_RS13620 93427a1f8477bcfca9a58f603133737a 621 Gene3D G3DSA:3.40.50.980 223 366 1.7E-29 T 22-04-2016 PP4_RS13620 93427a1f8477bcfca9a58f603133737a 621 Pfam PF00501 AMP-binding enzyme 50 484 5.4E-71 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PP4_RS13620 93427a1f8477bcfca9a58f603133737a 621 Gene3D G3DSA:2.30.38.10 407 475 1.2E-7 T 22-04-2016 PP4_RS13620 93427a1f8477bcfca9a58f603133737a 621 PANTHER PTHR24096 42 620 3.4E-198 T 22-04-2016 PP4_RS13620 93427a1f8477bcfca9a58f603133737a 621 ProSitePatterns PS00455 Putative AMP-binding domain signature. 216 227 - T 22-04-2016 IPR020845 AMP-binding, conserved site PP4_RS13620 93427a1f8477bcfca9a58f603133737a 621 PANTHER PTHR24096:SF192 42 620 3.4E-198 T 22-04-2016 IPR030310 Long-chain-fatty-acid--CoA ligase FadD17 GO:0004467|GO:0006633 PP4_RS17300 1d478a9d2c5f1a0ec6578d38441e675c 1344 Pfam PF14496 C-terminal novel E3 ligase, LRR-interacting 1070 1285 3.9E-61 T 22-04-2016 IPR029487 Novel E3 ligase domain GO:0004842|GO:0016567 KEGG: 00220+6.3.2.-|KEGG: 00261+6.3.2.-|KEGG: 00380+6.3.2.- PP4_RS17300 1d478a9d2c5f1a0ec6578d38441e675c 1344 Gene3D G3DSA:3.80.10.10 868 1041 1.1E-29 T 22-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like PP4_RS17300 1d478a9d2c5f1a0ec6578d38441e675c 1344 SUPERFAMILY SSF52058 859 1036 3.91E-24 T 22-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like PP4_RS17300 1d478a9d2c5f1a0ec6578d38441e675c 1344 Pfam PF13855 Leucine rich repeat 880 938 4.5E-7 T 22-04-2016 IPR001611 Leucine-rich repeat GO:0005515 PP4_RS17300 1d478a9d2c5f1a0ec6578d38441e675c 1344 PANTHER PTHR24365 868 1036 2.6E-17 T 22-04-2016 PP4_RS17300 1d478a9d2c5f1a0ec6578d38441e675c 1344 SMART SM00369 951 974 45.0 T 22-04-2016 IPR003591 Leucine-rich repeat, typical subtype PP4_RS17300 1d478a9d2c5f1a0ec6578d38441e675c 1344 SMART SM00369 902 925 0.71 T 22-04-2016 IPR003591 Leucine-rich repeat, typical subtype PP4_RS17300 1d478a9d2c5f1a0ec6578d38441e675c 1344 SMART SM00369 997 1019 17.0 T 22-04-2016 IPR003591 Leucine-rich repeat, typical subtype PP4_RS17300 1d478a9d2c5f1a0ec6578d38441e675c 1344 Gene3D G3DSA:1.20.1270.130 1069 1142 1.5E-7 T 22-04-2016 PP4_RS17300 1d478a9d2c5f1a0ec6578d38441e675c 1344 Gene3D G3DSA:1.20.58.360 1147 1280 4.9E-40 T 22-04-2016 PP4_RS17300 1d478a9d2c5f1a0ec6578d38441e675c 1344 SUPERFAMILY SSF89796 440 573 3.27E-5 T 22-04-2016 IPR023606 CoA-transferase family III domain PP4_RS19015 4ffe25c15e4aeb9c4e7a14147dd6e3c2 236 Gene3D G3DSA:1.10.10.60 127 184 8.6E-12 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS19015 4ffe25c15e4aeb9c4e7a14147dd6e3c2 236 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 184 225 - T 22-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PP4_RS19015 4ffe25c15e4aeb9c4e7a14147dd6e3c2 236 Gene3D G3DSA:2.60.120.10 1 69 3.9E-12 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS19015 4ffe25c15e4aeb9c4e7a14147dd6e3c2 236 Gene3D G3DSA:1.10.10.60 185 231 2.5E-10 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS19015 4ffe25c15e4aeb9c4e7a14147dd6e3c2 236 SUPERFAMILY SSF46689 184 231 3.05E-8 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS19015 4ffe25c15e4aeb9c4e7a14147dd6e3c2 236 PANTHER PTHR11019 1 231 1.6E-52 T 22-04-2016 PP4_RS19015 4ffe25c15e4aeb9c4e7a14147dd6e3c2 236 PANTHER PTHR11019:SF99 1 231 1.6E-52 T 22-04-2016 PP4_RS19015 4ffe25c15e4aeb9c4e7a14147dd6e3c2 236 SUPERFAMILY SSF51182 2 152 3.0E-14 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS19015 4ffe25c15e4aeb9c4e7a14147dd6e3c2 236 SMART SM00342 147 229 1.3E-21 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS19015 4ffe25c15e4aeb9c4e7a14147dd6e3c2 236 Pfam PF02311 AraC-like ligand binding domain 10 63 4.3E-6 T 22-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PP4_RS19015 4ffe25c15e4aeb9c4e7a14147dd6e3c2 236 Pfam PF12833 Helix-turn-helix domain 155 230 4.9E-19 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS17420 a7b67e3d13f51e5924354e6adc4ec6af 356 SUPERFAMILY SSF52540 45 180 1.06E-11 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS17420 a7b67e3d13f51e5924354e6adc4ec6af 356 PANTHER PTHR12169:SF11 64 354 8.5E-100 T 22-04-2016 PP4_RS17420 a7b67e3d13f51e5924354e6adc4ec6af 356 Gene3D G3DSA:3.40.50.300 56 176 2.0E-18 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS17420 a7b67e3d13f51e5924354e6adc4ec6af 356 Pfam PF03969 AFG1-like ATPase 61 353 1.0E-89 T 22-04-2016 IPR005654 ATPase, AFG1-like GO:0005524 PP4_RS17420 a7b67e3d13f51e5924354e6adc4ec6af 356 PANTHER PTHR12169 64 354 8.5E-100 T 22-04-2016 IPR005654 ATPase, AFG1-like GO:0005524 PP4_RS24815 9f3e16c91f99dc255720838d26b2775f 290 Gene3D G3DSA:1.20.1250.20 186 281 8.7E-5 T 22-04-2016 PP4_RS24815 9f3e16c91f99dc255720838d26b2775f 290 SUPERFAMILY SSF103481 185 283 5.49E-15 T 22-04-2016 PP4_RS24815 9f3e16c91f99dc255720838d26b2775f 290 Pfam PF00892 EamA-like transporter family 151 280 1.4E-23 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS24815 9f3e16c91f99dc255720838d26b2775f 290 Pfam PF00892 EamA-like transporter family 3 132 7.0E-23 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS24815 9f3e16c91f99dc255720838d26b2775f 290 SUPERFAMILY SSF103481 35 138 7.72E-13 T 22-04-2016 PP4_RS24815 9f3e16c91f99dc255720838d26b2775f 290 PANTHER PTHR12715:SF12 3 290 1.2E-85 T 22-04-2016 PP4_RS24815 9f3e16c91f99dc255720838d26b2775f 290 PANTHER PTHR12715 3 290 1.2E-85 T 22-04-2016 PP4_RS08830 ccdc81799b82955beae0480f6d9e7295 388 PANTHER PTHR13096 9 372 4.8E-69 T 22-04-2016 PP4_RS08830 ccdc81799b82955beae0480f6d9e7295 388 Gene3D G3DSA:2.60.120.650 7 215 2.1E-42 T 22-04-2016 PP4_RS08830 ccdc81799b82955beae0480f6d9e7295 388 SMART SM00558 101 229 2.3E-4 T 22-04-2016 IPR003347 JmjC domain PP4_RS08830 ccdc81799b82955beae0480f6d9e7295 388 Pfam PF08007 Cupin superfamily protein 16 318 1.1E-103 T 22-04-2016 IPR003347 JmjC domain PP4_RS08830 ccdc81799b82955beae0480f6d9e7295 388 SUPERFAMILY SSF51197 6 297 5.63E-76 T 22-04-2016 PP4_RS06285 43f3d891f054e0e11d5acd46598deac5 305 PANTHER PTHR18866 152 264 1.2E-29 T 22-04-2016 PP4_RS06285 43f3d891f054e0e11d5acd46598deac5 305 Pfam PF02626 Allophanate hydrolase subunit 2 26 286 9.9E-74 T 22-04-2016 IPR003778 Carboxyltransferase domain, subdomain A and B PP4_RS06285 43f3d891f054e0e11d5acd46598deac5 305 SMART SM00797 25 304 2.9E-123 T 22-04-2016 IPR003778 Carboxyltransferase domain, subdomain A and B PP4_RS06285 43f3d891f054e0e11d5acd46598deac5 305 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 4 295 9.1E-73 T 22-04-2016 IPR003778 Carboxyltransferase domain, subdomain A and B PP4_RS06285 43f3d891f054e0e11d5acd46598deac5 305 PANTHER PTHR18866:SF74 152 264 1.2E-29 T 22-04-2016 PP4_RS05400 cd46103428ff0915ab16fb4c51802400 239 Pfam PF00691 OmpA family 137 232 2.2E-25 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS05400 cd46103428ff0915ab16fb4c51802400 239 PRINTS PR01021 OMPA domain signature 168 183 2.5E-19 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PP4_RS05400 cd46103428ff0915ab16fb4c51802400 239 PRINTS PR01021 OMPA domain signature 138 160 2.5E-19 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PP4_RS05400 cd46103428ff0915ab16fb4c51802400 239 PRINTS PR01021 OMPA domain signature 183 199 2.5E-19 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PP4_RS05400 cd46103428ff0915ab16fb4c51802400 239 Gene3D G3DSA:4.10.1080.10 77 104 2.5E-4 T 22-04-2016 IPR028974 TSP type-3 repeat GO:0005509 PP4_RS05400 cd46103428ff0915ab16fb4c51802400 239 SUPERFAMILY SSF103088 112 237 5.23E-37 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS05400 cd46103428ff0915ab16fb4c51802400 239 Gene3D G3DSA:3.30.1330.60 124 238 5.3E-39 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS05400 cd46103428ff0915ab16fb4c51802400 239 PANTHER PTHR30128 63 238 2.8E-45 T 22-04-2016 PP4_RS05400 cd46103428ff0915ab16fb4c51802400 239 SUPERFAMILY SSF103647 77 112 4.05E-7 T 22-04-2016 IPR028974 TSP type-3 repeat GO:0005509 PP4_RS05400 cd46103428ff0915ab16fb4c51802400 239 ProSitePatterns PS01068 OmpA-like domain. 170 214 - T 22-04-2016 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 PP4_RS05400 cd46103428ff0915ab16fb4c51802400 239 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 221 239 7.0E-8 T 22-04-2016 PP4_RS05400 cd46103428ff0915ab16fb4c51802400 239 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 183 200 7.0E-8 T 22-04-2016 PP4_RS05400 cd46103428ff0915ab16fb4c51802400 239 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 201 220 7.0E-8 T 22-04-2016 PP4_RS16790 6e0ad9abd0ab105d72b2349eaaa374f9 287 SUPERFAMILY SSF55073 133 283 4.47E-42 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS16790 6e0ad9abd0ab105d72b2349eaaa374f9 287 SMART SM00267 117 287 5.8E-54 T 22-04-2016 IPR000160 GGDEF domain PP4_RS16790 6e0ad9abd0ab105d72b2349eaaa374f9 287 Gene3D G3DSA:3.30.450.20 7 125 4.5E-27 T 22-04-2016 PP4_RS16790 6e0ad9abd0ab105d72b2349eaaa374f9 287 SMART SM00091 7 73 4.7E-13 T 22-04-2016 IPR000014 PAS domain PP4_RS16790 6e0ad9abd0ab105d72b2349eaaa374f9 287 PANTHER PTHR10799:SF774 1 282 2.7E-30 T 22-04-2016 PP4_RS16790 6e0ad9abd0ab105d72b2349eaaa374f9 287 Gene3D G3DSA:3.30.70.270 129 283 6.9E-50 T 22-04-2016 PP4_RS16790 6e0ad9abd0ab105d72b2349eaaa374f9 287 PANTHER PTHR10799 1 282 2.7E-30 T 22-04-2016 PP4_RS16790 6e0ad9abd0ab105d72b2349eaaa374f9 287 Pfam PF08447 PAS fold 30 98 1.3E-13 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 PP4_RS16790 6e0ad9abd0ab105d72b2349eaaa374f9 287 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 7 124 1.8E-18 T 22-04-2016 IPR000014 PAS domain PP4_RS16790 6e0ad9abd0ab105d72b2349eaaa374f9 287 Pfam PF00990 Diguanylate cyclase, GGDEF domain 128 284 1.1E-46 T 22-04-2016 IPR000160 GGDEF domain PP4_RS16790 6e0ad9abd0ab105d72b2349eaaa374f9 287 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 125 283 3.3E-40 T 22-04-2016 IPR000160 GGDEF domain PP4_RS16790 6e0ad9abd0ab105d72b2349eaaa374f9 287 SUPERFAMILY SSF55785 18 125 2.79E-24 T 22-04-2016 IPR000014 PAS domain PP4_RS03405 a67484206ee37a940aa74122d0bb6da2 220 PANTHER PTHR30055:SF42 11 216 4.5E-78 T 22-04-2016 PP4_RS03405 a67484206ee37a940aa74122d0bb6da2 220 Pfam PF08362 YcdC-like protein, C-terminal region 75 215 1.1E-54 T 22-04-2016 IPR013573 Transcription regulator YcdC, C-terminal GO:0045892 PP4_RS03405 a67484206ee37a940aa74122d0bb6da2 220 SUPERFAMILY SSF46689 17 95 3.9E-16 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS03405 a67484206ee37a940aa74122d0bb6da2 220 Gene3D G3DSA:1.10.10.60 18 74 7.9E-18 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS03405 a67484206ee37a940aa74122d0bb6da2 220 Pfam PF00440 Bacterial regulatory proteins, tetR family 28 74 2.1E-11 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS03405 a67484206ee37a940aa74122d0bb6da2 220 SUPERFAMILY SSF48498 92 216 1.05E-41 T 22-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal PP4_RS03405 a67484206ee37a940aa74122d0bb6da2 220 Gene3D G3DSA:1.10.357.10 75 216 9.1E-58 T 22-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PP4_RS03405 a67484206ee37a940aa74122d0bb6da2 220 PANTHER PTHR30055 11 216 4.5E-78 T 22-04-2016 PP4_RS21050 03840ab61e18fbeeb55d96b5cddd9e78 260 Pfam PF00557 Metallopeptidase family M24 12 241 8.2E-59 T 22-04-2016 IPR000994 Peptidase M24, structural domain PP4_RS21050 03840ab61e18fbeeb55d96b5cddd9e78 260 SUPERFAMILY SSF55920 5 254 1.26E-94 T 22-04-2016 IPR000994 Peptidase M24, structural domain PP4_RS21050 03840ab61e18fbeeb55d96b5cddd9e78 260 Hamap MF_01974 Methionine aminopeptidase [map]. 3 250 43.024 T 22-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 PP4_RS21050 03840ab61e18fbeeb55d96b5cddd9e78 260 PRINTS PR00599 Methionine aminopeptidase-1 signature 69 82 3.4E-22 T 22-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase PP4_RS21050 03840ab61e18fbeeb55d96b5cddd9e78 260 PRINTS PR00599 Methionine aminopeptidase-1 signature 192 204 3.4E-22 T 22-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase PP4_RS21050 03840ab61e18fbeeb55d96b5cddd9e78 260 PRINTS PR00599 Methionine aminopeptidase-1 signature 91 107 3.4E-22 T 22-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase PP4_RS21050 03840ab61e18fbeeb55d96b5cddd9e78 260 PRINTS PR00599 Methionine aminopeptidase-1 signature 161 173 3.4E-22 T 22-04-2016 IPR001714 Peptidase M24, methionine aminopeptidase PP4_RS21050 03840ab61e18fbeeb55d96b5cddd9e78 260 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 4 249 5.0E-103 T 22-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 PP4_RS21050 03840ab61e18fbeeb55d96b5cddd9e78 260 PANTHER PTHR10804 1 257 9.9E-173 T 22-04-2016 PP4_RS21050 03840ab61e18fbeeb55d96b5cddd9e78 260 PANTHER PTHR10804:SF75 1 257 9.9E-173 T 22-04-2016 PP4_RS21050 03840ab61e18fbeeb55d96b5cddd9e78 260 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 167 185 - T 22-04-2016 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 PP4_RS21050 03840ab61e18fbeeb55d96b5cddd9e78 260 Gene3D G3DSA:3.90.230.10 5 256 8.6E-104 T 22-04-2016 IPR000994 Peptidase M24, structural domain PP4_RS05560 2f01c07120ac2beebb9a07f8c9d74f12 305 PANTHER PTHR30537:SF11 1 295 1.3E-136 T 22-04-2016 PP4_RS05560 2f01c07120ac2beebb9a07f8c9d74f12 305 Gene3D G3DSA:1.10.10.10 3 81 1.4E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS05560 2f01c07120ac2beebb9a07f8c9d74f12 305 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 6.4E-18 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS05560 2f01c07120ac2beebb9a07f8c9d74f12 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.0E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS05560 2f01c07120ac2beebb9a07f8c9d74f12 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.0E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS05560 2f01c07120ac2beebb9a07f8c9d74f12 305 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.0E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS05560 2f01c07120ac2beebb9a07f8c9d74f12 305 SUPERFAMILY SSF53850 89 297 3.26E-44 T 22-04-2016 PP4_RS05560 2f01c07120ac2beebb9a07f8c9d74f12 305 Gene3D G3DSA:3.40.190.10 180 260 8.7E-5 T 22-04-2016 PP4_RS05560 2f01c07120ac2beebb9a07f8c9d74f12 305 Pfam PF03466 LysR substrate binding domain 88 294 1.4E-42 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS05560 2f01c07120ac2beebb9a07f8c9d74f12 305 Gene3D G3DSA:3.40.190.10 92 179 6.5E-26 T 22-04-2016 PP4_RS05560 2f01c07120ac2beebb9a07f8c9d74f12 305 SUPERFAMILY SSF46785 4 85 9.33E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS05560 2f01c07120ac2beebb9a07f8c9d74f12 305 PANTHER PTHR30537 1 295 1.3E-136 T 22-04-2016 PP4_RS25845 cb958306703d0c32508878fcf992dfd3 716 Gene3D G3DSA:3.90.176.10 503 666 3.4E-6 T 22-04-2016 PP4_RS25845 cb958306703d0c32508878fcf992dfd3 716 SUPERFAMILY SSF56399 503 666 4.03E-16 T 22-04-2016 PP4_RS10435 c553caa69c6df6919276cd93f48deff2 439 Gene3D G3DSA:3.50.50.60 179 257 7.6E-34 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS10435 c553caa69c6df6919276cd93f48deff2 439 Gene3D G3DSA:3.50.50.60 356 403 7.6E-34 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS10435 c553caa69c6df6919276cd93f48deff2 439 Gene3D G3DSA:3.50.50.60 24 126 7.6E-34 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS10435 c553caa69c6df6919276cd93f48deff2 439 PANTHER PTHR13847:SF196 1 421 3.8E-103 T 22-04-2016 PP4_RS10435 c553caa69c6df6919276cd93f48deff2 439 SUPERFAMILY SSF51905 36 258 8.42E-35 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS10435 c553caa69c6df6919276cd93f48deff2 439 SUPERFAMILY SSF51905 366 402 8.42E-35 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS10435 c553caa69c6df6919276cd93f48deff2 439 Pfam PF01266 FAD dependent oxidoreductase 37 393 1.4E-42 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PP4_RS10435 c553caa69c6df6919276cd93f48deff2 439 PANTHER PTHR13847 1 421 3.8E-103 T 22-04-2016 PP4_RS25620 6f91561ddc645836f1301c74318f2367 90 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 77 22.106 T 22-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 PP4_RS25620 6f91561ddc645836f1301c74318f2367 90 PANTHER PTHR33162 1 47 1.2E-14 T 22-04-2016 PP4_RS25620 6f91561ddc645836f1301c74318f2367 90 Pfam PF02416 mttA/Hcf106 family 6 49 1.8E-13 T 22-04-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 PP4_RS25620 6f91561ddc645836f1301c74318f2367 90 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 4 48 2.7E-22 T 22-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 PP4_RS14265 1ff9c037043a24b5a549e1819dfdc8a3 486 SMART SM00387 377 484 9.6E-27 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS14265 1ff9c037043a24b5a549e1819dfdc8a3 486 PANTHER PTHR24423 260 483 1.7E-39 T 22-04-2016 PP4_RS14265 1ff9c037043a24b5a549e1819dfdc8a3 486 PANTHER PTHR24423 179 218 1.7E-39 T 22-04-2016 PP4_RS14265 1ff9c037043a24b5a549e1819dfdc8a3 486 PRINTS PR00344 Bacterial sensor protein C-terminal signature 444 462 3.4E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS14265 1ff9c037043a24b5a549e1819dfdc8a3 486 PRINTS PR00344 Bacterial sensor protein C-terminal signature 433 443 3.4E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS14265 1ff9c037043a24b5a549e1819dfdc8a3 486 PRINTS PR00344 Bacterial sensor protein C-terminal signature 468 481 3.4E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS14265 1ff9c037043a24b5a549e1819dfdc8a3 486 PRINTS PR00344 Bacterial sensor protein C-terminal signature 415 429 3.4E-12 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS14265 1ff9c037043a24b5a549e1819dfdc8a3 486 Pfam PF00512 His Kinase A (phospho-acceptor) domain 273 329 3.6E-10 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS14265 1ff9c037043a24b5a549e1819dfdc8a3 486 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 379 483 2.2E-20 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS14265 1ff9c037043a24b5a549e1819dfdc8a3 486 Gene3D G3DSA:1.10.287.130 274 320 5.8E-9 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS14265 1ff9c037043a24b5a549e1819dfdc8a3 486 SUPERFAMILY SSF55874 335 480 2.23E-32 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS14265 1ff9c037043a24b5a549e1819dfdc8a3 486 Gene3D G3DSA:3.30.565.10 321 482 7.4E-32 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS14265 1ff9c037043a24b5a549e1819dfdc8a3 486 SMART SM00388 272 336 6.3E-9 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS14265 1ff9c037043a24b5a549e1819dfdc8a3 486 SUPERFAMILY SSF47384 268 332 4.12E-10 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS13675 35827b9a2ce0e5c401af884c391c3a02 395 Gene3D G3DSA:1.10.540.10 5 127 3.3E-24 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS13675 35827b9a2ce0e5c401af884c391c3a02 395 PANTHER PTHR10909 4 393 5.7E-121 T 22-04-2016 PP4_RS13675 35827b9a2ce0e5c401af884c391c3a02 395 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 281 390 3.9E-8 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS13675 35827b9a2ce0e5c401af884c391c3a02 395 Gene3D G3DSA:2.40.110.10 128 223 2.6E-35 T 22-04-2016 PP4_RS13675 35827b9a2ce0e5c401af884c391c3a02 395 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 5 125 9.0E-20 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS13675 35827b9a2ce0e5c401af884c391c3a02 395 Gene3D G3DSA:1.20.140.10 224 394 4.9E-17 T 22-04-2016 PP4_RS13675 35827b9a2ce0e5c401af884c391c3a02 395 PANTHER PTHR10909:SF242 4 393 5.7E-121 T 22-04-2016 PP4_RS13675 35827b9a2ce0e5c401af884c391c3a02 395 SUPERFAMILY SSF47203 269 393 1.58E-11 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS13675 35827b9a2ce0e5c401af884c391c3a02 395 SUPERFAMILY SSF56645 5 248 6.15E-69 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 PP4_RS13675 35827b9a2ce0e5c401af884c391c3a02 395 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 129 223 6.2E-20 T 22-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 PP4_RS18170 b9bb78ca5f1eda80aee50d5df0726ae5 354 PANTHER PTHR21716 1 343 2.8E-90 T 22-04-2016 IPR002549 Transmembrane protein TqsA-like PP4_RS18170 b9bb78ca5f1eda80aee50d5df0726ae5 354 PANTHER PTHR21716:SF13 1 343 2.8E-90 T 22-04-2016 PP4_RS18170 b9bb78ca5f1eda80aee50d5df0726ae5 354 Pfam PF01594 Domain of unknown function DUF20 13 337 2.1E-55 T 22-04-2016 IPR002549 Transmembrane protein TqsA-like PP4_RS10970 65455554d2d7bfb84873c8fcd71ba1d6 278 Gene3D G3DSA:3.40.190.10 235 276 2.4E-34 T 22-04-2016 PP4_RS10970 65455554d2d7bfb84873c8fcd71ba1d6 278 Gene3D G3DSA:3.40.190.10 38 116 2.4E-34 T 22-04-2016 PP4_RS10970 65455554d2d7bfb84873c8fcd71ba1d6 278 Gene3D G3DSA:3.40.190.10 117 234 5.6E-23 T 22-04-2016 PP4_RS10970 65455554d2d7bfb84873c8fcd71ba1d6 278 PANTHER PTHR18966 43 273 9.5E-33 T 22-04-2016 PP4_RS10970 65455554d2d7bfb84873c8fcd71ba1d6 278 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 62 75 - T 22-04-2016 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 PP4_RS10970 65455554d2d7bfb84873c8fcd71ba1d6 278 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 46 273 5.9E-54 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS10970 65455554d2d7bfb84873c8fcd71ba1d6 278 SUPERFAMILY SSF53850 12 276 9.32E-58 T 22-04-2016 PP4_RS10970 65455554d2d7bfb84873c8fcd71ba1d6 278 SMART SM00062 39 275 5.3E-40 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS16370 9f1cfc337838e9d7305f5cfa006230a7 460 Gene3D G3DSA:3.40.640.10 76 346 2.4E-74 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS16370 9f1cfc337838e9d7305f5cfa006230a7 460 SUPERFAMILY SSF53383 12 451 7.69E-109 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS16370 9f1cfc337838e9d7305f5cfa006230a7 460 Gene3D G3DSA:3.90.1150.10 348 453 2.5E-37 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS16370 9f1cfc337838e9d7305f5cfa006230a7 460 Gene3D G3DSA:3.90.1150.10 11 72 2.5E-37 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS16370 9f1cfc337838e9d7305f5cfa006230a7 460 PANTHER PTHR11986:SF81 8 458 2.9E-127 T 22-04-2016 PP4_RS16370 9f1cfc337838e9d7305f5cfa006230a7 460 PANTHER PTHR11986 8 458 2.9E-127 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS16370 9f1cfc337838e9d7305f5cfa006230a7 460 Pfam PF00202 Aminotransferase class-III 38 447 8.2E-88 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS06645 6c93943f7b9eb4b26a2a8722dc9c7cf2 121 PANTHER PTHR35813 1 117 8.9E-45 T 22-04-2016 PP4_RS06645 6c93943f7b9eb4b26a2a8722dc9c7cf2 121 PANTHER PTHR35813:SF1 1 117 8.9E-45 T 22-04-2016 PP4_RS06645 6c93943f7b9eb4b26a2a8722dc9c7cf2 121 PIRSF PIRSF016789 1 121 4.2E-39 T 22-04-2016 IPR007401 Protein of unknown function DUF454 PP4_RS06645 6c93943f7b9eb4b26a2a8722dc9c7cf2 121 Pfam PF04304 Protein of unknown function (DUF454) 2 116 3.7E-42 T 22-04-2016 IPR007401 Protein of unknown function DUF454 PP4_RS08315 65f947313509a79b81e0ac0d97139a6a 182 PANTHER PTHR10849 14 182 7.5E-82 T 22-04-2016 PP4_RS08315 65f947313509a79b81e0ac0d97139a6a 182 Gene3D G3DSA:3.30.70.20 32 119 1.5E-18 T 22-04-2016 PP4_RS08315 65f947313509a79b81e0ac0d97139a6a 182 Hamap MF_01351 NAD(P)H-quinone oxidoreductase subunit I, chloroplastic [ndhI]. 2 152 28.559 T 22-04-2016 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 PP4_RS08315 65f947313509a79b81e0ac0d97139a6a 182 TIGRFAM TIGR01971 NuoI: NADH-quinone oxidoreductase, chain I 18 139 8.4E-53 T 22-04-2016 IPR010226 NADH-quinone oxidoreductase, chain I GO:0016020|GO:0016651|GO:0051539|GO:0055114 PP4_RS08315 65f947313509a79b81e0ac0d97139a6a 182 SUPERFAMILY SSF54862 35 162 1.05E-29 T 22-04-2016 PP4_RS08315 65f947313509a79b81e0ac0d97139a6a 182 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 62 73 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PP4_RS08315 65f947313509a79b81e0ac0d97139a6a 182 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 101 112 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PP4_RS08315 65f947313509a79b81e0ac0d97139a6a 182 Pfam PF12838 4Fe-4S dicluster domain 61 115 1.3E-11 T 22-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PP4_RS08315 65f947313509a79b81e0ac0d97139a6a 182 PANTHER PTHR10849:SF13 14 182 7.5E-82 T 22-04-2016 PP4_RS06090 1d9ea35f7de468b80e0cf5e3cf2f26ba 363 PANTHER PTHR22893:SF7 1 345 2.4E-138 T 22-04-2016 PP4_RS06090 1d9ea35f7de468b80e0cf5e3cf2f26ba 363 PANTHER PTHR22893 1 345 2.4E-138 T 22-04-2016 PP4_RS06090 1d9ea35f7de468b80e0cf5e3cf2f26ba 363 Gene3D G3DSA:3.20.20.70 1 347 4.1E-119 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS06090 1d9ea35f7de468b80e0cf5e3cf2f26ba 363 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 4 339 9.0E-68 T 22-04-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 PP4_RS06090 1d9ea35f7de468b80e0cf5e3cf2f26ba 363 SUPERFAMILY SSF51395 1 352 1.21E-111 T 22-04-2016 PP4_RS00505 006b2491b11706e4745295bfa49bd053 297 Pfam PF01040 UbiA prenyltransferase family 28 273 9.9E-62 T 22-04-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 PP4_RS00505 006b2491b11706e4745295bfa49bd053 297 TIGRFAM TIGR01473 cyoE_ctaB: protoheme IX farnesyltransferase 13 291 2.9E-103 T 22-04-2016 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 UniPathway: UPA00834 PP4_RS00505 006b2491b11706e4745295bfa49bd053 297 Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. 11 292 19.944 T 22-04-2016 IPR006369 Protohaem IX farnesyltransferase GO:0008495|GO:0016021|GO:0048034 UniPathway: UPA00834 PP4_RS00505 006b2491b11706e4745295bfa49bd053 297 PANTHER PTHR11048:SF3 12 291 1.2E-79 T 22-04-2016 PP4_RS00505 006b2491b11706e4745295bfa49bd053 297 ProSitePatterns PS00943 UbiA prenyltransferase family signature. 66 88 - T 22-04-2016 IPR030470 UbiA prenyltransferase conserved site PP4_RS00505 006b2491b11706e4745295bfa49bd053 297 PANTHER PTHR11048 12 291 1.2E-79 T 22-04-2016 PP4_RS15005 e18c950a1e02c7530896862e2a4a4918 753 Pfam PF13307 Helicase C-terminal domain 587 749 1.2E-33 T 22-04-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 PP4_RS15005 e18c950a1e02c7530896862e2a4a4918 753 Gene3D G3DSA:3.40.50.300 177 285 2.0E-15 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS15005 e18c950a1e02c7530896862e2a4a4918 753 Gene3D G3DSA:3.40.50.300 334 399 2.0E-15 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS15005 e18c950a1e02c7530896862e2a4a4918 753 Gene3D G3DSA:3.40.50.300 519 538 2.0E-15 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS15005 e18c950a1e02c7530896862e2a4a4918 753 SUPERFAMILY SSF52540 707 730 1.21E-8 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS15005 e18c950a1e02c7530896862e2a4a4918 753 SUPERFAMILY SSF52540 324 373 1.21E-8 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS15005 e18c950a1e02c7530896862e2a4a4918 753 SUPERFAMILY SSF52540 501 542 1.21E-8 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS15005 e18c950a1e02c7530896862e2a4a4918 753 SUPERFAMILY SSF52540 576 675 1.21E-8 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS15005 e18c950a1e02c7530896862e2a4a4918 753 PANTHER PTHR11472 178 748 3.2E-72 T 22-04-2016 PP4_RS15005 e18c950a1e02c7530896862e2a4a4918 753 Pfam PF06733 DEAD_2 270 392 4.0E-12 T 22-04-2016 IPR010614 DEAD2 GO:0003677|GO:0004003|GO:0005524 PP4_RS15005 e18c950a1e02c7530896862e2a4a4918 753 SMART SM00488 174 418 0.0017 T 22-04-2016 IPR006554 Helicase-like, DEXD box c2 type GO:0004003|GO:0016818 PP4_RS15005 e18c950a1e02c7530896862e2a4a4918 753 Gene3D G3DSA:3.40.50.300 572 674 1.4E-4 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS15005 e18c950a1e02c7530896862e2a4a4918 753 Gene3D G3DSA:3.40.50.300 706 741 1.4E-4 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS15005 e18c950a1e02c7530896862e2a4a4918 753 SUPERFAMILY SSF52540 337 391 7.98E-16 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS15005 e18c950a1e02c7530896862e2a4a4918 753 SUPERFAMILY SSF52540 505 531 7.98E-16 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS15005 e18c950a1e02c7530896862e2a4a4918 753 SUPERFAMILY SSF52540 155 285 7.98E-16 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS15005 e18c950a1e02c7530896862e2a4a4918 753 SMART SM00491 602 737 1.5E-10 T 22-04-2016 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 PP4_RS13180 0df70f7f5bc98c84e5306a446f0ac37b 146 Gene3D G3DSA:3.10.129.10 6 139 2.2E-45 T 22-04-2016 IPR029069 HotDog domain PP4_RS13180 0df70f7f5bc98c84e5306a446f0ac37b 146 PANTHER PTHR12418 14 146 4.6E-37 T 22-04-2016 PP4_RS13180 0df70f7f5bc98c84e5306a446f0ac37b 146 TIGRFAM TIGR02286 PaaD: phenylacetic acid degradation protein PaaD 22 134 3.3E-53 T 22-04-2016 IPR011973 Phenylacetic acid degradation protein PaaD GO:0016790 KEGG: 00360+3.1.2.-|KEGG: 00362+3.1.2.-|KEGG: 00592+3.1.2.-|KEGG: 00903+3.1.2.- PP4_RS13180 0df70f7f5bc98c84e5306a446f0ac37b 146 TIGRFAM TIGR00369 unchar_dom_1: uncharacterized domain 1 21 131 3.6E-24 T 22-04-2016 IPR003736 Phenylacetic acid degradation-related domain PP4_RS13180 0df70f7f5bc98c84e5306a446f0ac37b 146 SUPERFAMILY SSF54637 2 129 1.44E-32 T 22-04-2016 IPR029069 HotDog domain PP4_RS13180 0df70f7f5bc98c84e5306a446f0ac37b 146 PANTHER PTHR12418:SF24 14 146 4.6E-37 T 22-04-2016 PP4_RS13180 0df70f7f5bc98c84e5306a446f0ac37b 146 Pfam PF03061 Thioesterase superfamily 50 125 4.8E-15 T 22-04-2016 IPR006683 Thioesterase domain PP4_RS07280 b22e02d6dae9bfbffacf55be4f8b99a2 437 PANTHER PTHR11564:SF3 126 425 2.6E-66 T 22-04-2016 IPR020006 Flagellar biosynthesis protein FlhF GO:0003924|GO:0044781 PP4_RS07280 b22e02d6dae9bfbffacf55be4f8b99a2 437 Pfam PF00448 SRP54-type protein, GTPase domain 220 408 4.5E-46 T 22-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 PP4_RS07280 b22e02d6dae9bfbffacf55be4f8b99a2 437 SMART SM00382 217 387 5.3E-7 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS07280 b22e02d6dae9bfbffacf55be4f8b99a2 437 Gene3D G3DSA:3.40.50.300 231 407 6.6E-40 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS07280 b22e02d6dae9bfbffacf55be4f8b99a2 437 SMART SM00962 218 410 4.8E-50 T 22-04-2016 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: REACT_15380 PP4_RS07280 b22e02d6dae9bfbffacf55be4f8b99a2 437 TIGRFAM TIGR03499 FlhF: flagellar biosynthesis protein FlhF 1 306 4.9E-76 T 22-04-2016 IPR020006 Flagellar biosynthesis protein FlhF GO:0003924|GO:0044781 PP4_RS07280 b22e02d6dae9bfbffacf55be4f8b99a2 437 Gene3D G3DSA:1.20.120.140 191 230 3.0E-6 T 22-04-2016 PP4_RS07280 b22e02d6dae9bfbffacf55be4f8b99a2 437 PANTHER PTHR11564 126 425 2.6E-66 T 22-04-2016 PP4_RS07280 b22e02d6dae9bfbffacf55be4f8b99a2 437 SUPERFAMILY SSF52540 214 407 1.16E-29 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS19900 f3e70387ce4ccbcc0ba5949f51b57cf7 384 PANTHER PTHR23522 1 383 2.4E-112 T 22-04-2016 PP4_RS19900 f3e70387ce4ccbcc0ba5949f51b57cf7 384 Pfam PF12832 MFS_1 like family 6 359 6.7E-83 T 22-04-2016 IPR024989 Major facilitator superfamily associated domain PP4_RS19900 f3e70387ce4ccbcc0ba5949f51b57cf7 384 Gene3D G3DSA:1.20.1250.20 6 177 3.3E-16 T 22-04-2016 PP4_RS19900 f3e70387ce4ccbcc0ba5949f51b57cf7 384 Gene3D G3DSA:1.20.1250.20 196 380 3.6E-28 T 22-04-2016 PP4_RS19900 f3e70387ce4ccbcc0ba5949f51b57cf7 384 SUPERFAMILY SSF103473 6 383 6.8E-46 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS19900 f3e70387ce4ccbcc0ba5949f51b57cf7 384 PANTHER PTHR23522:SF3 1 383 2.4E-112 T 22-04-2016 PP4_RS19900 f3e70387ce4ccbcc0ba5949f51b57cf7 384 PIRSF PIRSF004925 1 384 1.5E-106 T 22-04-2016 IPR026032 Probable 3-phenylpropionic acid transporter PP4_RS12135 997130ca5a39b775836cc9837c2fd6bb 497 SUPERFAMILY SSF53720 11 496 5.76E-173 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS12135 997130ca5a39b775836cc9837c2fd6bb 497 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 270 277 - T 22-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 PP4_RS12135 997130ca5a39b775836cc9837c2fd6bb 497 PANTHER PTHR11699 2 497 3.6E-237 T 22-04-2016 PP4_RS12135 997130ca5a39b775836cc9837c2fd6bb 497 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 298 309 - T 22-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 PP4_RS12135 997130ca5a39b775836cc9837c2fd6bb 497 Gene3D G3DSA:3.40.309.10 284 468 8.2E-72 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PP4_RS12135 997130ca5a39b775836cc9837c2fd6bb 497 Gene3D G3DSA:3.40.605.10 18 283 3.2E-102 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS12135 997130ca5a39b775836cc9837c2fd6bb 497 Pfam PF00171 Aldehyde dehydrogenase family 27 493 2.0E-176 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PP4_RS03125 b9000d8d95f96ed7f1096902ec8aad26 175 Pfam PF00719 Inorganic pyrophosphatase 18 174 3.8E-53 T 22-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 PP4_RS03125 b9000d8d95f96ed7f1096902ec8aad26 175 Gene3D G3DSA:3.90.80.10 3 174 2.4E-60 T 22-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 PP4_RS03125 b9000d8d95f96ed7f1096902ec8aad26 175 PANTHER PTHR10286 6 174 3.0E-70 T 22-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 PP4_RS03125 b9000d8d95f96ed7f1096902ec8aad26 175 ProSitePatterns PS00387 Inorganic pyrophosphatase signature. 66 72 - T 22-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 PP4_RS03125 b9000d8d95f96ed7f1096902ec8aad26 175 SUPERFAMILY SSF50324 3 174 4.84E-67 T 22-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 PP4_RS03125 b9000d8d95f96ed7f1096902ec8aad26 175 Hamap MF_00209 Inorganic pyrophosphatase [ppa]. 14 174 37.135 T 22-04-2016 IPR008162 Inorganic pyrophosphatase GO:0000287|GO:0004427|GO:0005737|GO:0006796 KEGG: 00190+3.6.1.1|Reactome: REACT_21259|Reactome: REACT_71 PP4_RS18505 03b9948e9e0227796f6d04f47e358e8a 318 SUPERFAMILY SSF46785 24 101 3.05E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS18505 03b9948e9e0227796f6d04f47e358e8a 318 SUPERFAMILY SSF53850 113 308 1.21E-32 T 22-04-2016 PP4_RS18505 03b9948e9e0227796f6d04f47e358e8a 318 Gene3D G3DSA:3.40.190.10 197 277 1.5E-18 T 22-04-2016 PP4_RS18505 03b9948e9e0227796f6d04f47e358e8a 318 Gene3D G3DSA:3.40.190.10 113 196 7.6E-19 T 22-04-2016 PP4_RS18505 03b9948e9e0227796f6d04f47e358e8a 318 Gene3D G3DSA:1.10.10.10 20 101 2.0E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS18505 03b9948e9e0227796f6d04f47e358e8a 318 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 27 84 6.0E-17 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS18505 03b9948e9e0227796f6d04f47e358e8a 318 PANTHER PTHR30537 18 308 4.3E-65 T 22-04-2016 PP4_RS18505 03b9948e9e0227796f6d04f47e358e8a 318 Pfam PF03466 LysR substrate binding domain 113 307 4.7E-29 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS10615 ac3ff6d5ba49ac87130686906a8499de 248 Pfam PF00378 Enoyl-CoA hydratase/isomerase 10 239 7.2E-38 T 22-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 PP4_RS10615 ac3ff6d5ba49ac87130686906a8499de 248 PANTHER PTHR11941 2 247 1.5E-66 T 22-04-2016 PP4_RS10615 ac3ff6d5ba49ac87130686906a8499de 248 PANTHER PTHR11941:SF17 2 247 1.5E-66 T 22-04-2016 PP4_RS10615 ac3ff6d5ba49ac87130686906a8499de 248 SUPERFAMILY SSF52096 2 247 4.58E-64 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS10615 ac3ff6d5ba49ac87130686906a8499de 248 Gene3D G3DSA:3.90.226.10 4 246 8.4E-63 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS23175 3c12f9b05116db7b8a6d5741071d1160 555 Pfam PF00005 ABC transporter 340 473 2.9E-21 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS23175 3c12f9b05116db7b8a6d5741071d1160 555 Pfam PF00005 ABC transporter 22 191 2.2E-28 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS23175 3c12f9b05116db7b8a6d5741071d1160 555 PANTHER PTHR19211 3 555 0.0 T 22-04-2016 PP4_RS23175 3c12f9b05116db7b8a6d5741071d1160 555 Pfam PF12848 ABC transporter 230 305 3.0E-11 T 22-04-2016 IPR032781 ABC-transporter extension domain PP4_RS23175 3c12f9b05116db7b8a6d5741071d1160 555 PANTHER PTHR19211:SF7 3 555 0.0 T 22-04-2016 PP4_RS23175 3c12f9b05116db7b8a6d5741071d1160 555 ProSitePatterns PS00211 ABC transporters family signature. 163 177 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS23175 3c12f9b05116db7b8a6d5741071d1160 555 SMART SM00382 348 518 1.3E-8 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS23175 3c12f9b05116db7b8a6d5741071d1160 555 SMART SM00382 31 236 7.2E-7 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS23175 3c12f9b05116db7b8a6d5741071d1160 555 Gene3D G3DSA:3.40.50.300 8 105 1.1E-49 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23175 3c12f9b05116db7b8a6d5741071d1160 555 Gene3D G3DSA:3.40.50.300 141 288 1.1E-49 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23175 3c12f9b05116db7b8a6d5741071d1160 555 SUPERFAMILY SSF52540 301 522 4.51E-45 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23175 3c12f9b05116db7b8a6d5741071d1160 555 TIGRFAM TIGR03719 ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family 2 553 6.1E-297 T 22-04-2016 IPR022374 ABC transporter, ATP-binding protein, ChvD PP4_RS23175 3c12f9b05116db7b8a6d5741071d1160 555 SUPERFAMILY SSF52540 9 244 1.93E-48 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23175 3c12f9b05116db7b8a6d5741071d1160 555 Gene3D G3DSA:3.40.50.300 322 540 6.3E-43 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS17140 7dc31193b5933e4ceaf9bf3ad55f53e1 246 PANTHER PTHR26402 5 236 5.4E-97 T 22-04-2016 PP4_RS17140 7dc31193b5933e4ceaf9bf3ad55f53e1 246 Gene3D G3DSA:1.10.10.10 135 236 6.9E-27 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS17140 7dc31193b5933e4ceaf9bf3ad55f53e1 246 SMART SM00862 159 235 3.9E-20 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS17140 7dc31193b5933e4ceaf9bf3ad55f53e1 246 PANTHER PTHR26402:SF528 5 236 5.4E-97 T 22-04-2016 PP4_RS17140 7dc31193b5933e4ceaf9bf3ad55f53e1 246 SUPERFAMILY SSF46894 135 236 2.83E-24 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS17140 7dc31193b5933e4ceaf9bf3ad55f53e1 246 Pfam PF00486 Transcriptional regulatory protein, C terminal 161 235 2.2E-20 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS17140 7dc31193b5933e4ceaf9bf3ad55f53e1 246 Pfam PF00072 Response regulator receiver domain 7 118 1.8E-30 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS17140 7dc31193b5933e4ceaf9bf3ad55f53e1 246 SMART SM00448 5 117 3.5E-41 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS17140 7dc31193b5933e4ceaf9bf3ad55f53e1 246 SUPERFAMILY SSF52172 6 133 1.99E-41 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS17140 7dc31193b5933e4ceaf9bf3ad55f53e1 246 Gene3D G3DSA:3.40.50.2300 6 126 4.8E-41 T 22-04-2016 PP4_RS17785 717b5b441f1c91e04161b450dfa687b7 292 Gene3D G3DSA:1.10.10.10 6 81 1.9E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS17785 717b5b441f1c91e04161b450dfa687b7 292 SUPERFAMILY SSF53850 89 291 1.19E-27 T 22-04-2016 PP4_RS17785 717b5b441f1c91e04161b450dfa687b7 292 PANTHER PTHR30126 3 289 7.8E-78 T 22-04-2016 PP4_RS17785 717b5b441f1c91e04161b450dfa687b7 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 2.4E-17 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS17785 717b5b441f1c91e04161b450dfa687b7 292 SUPERFAMILY SSF46785 6 87 1.09E-16 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS17785 717b5b441f1c91e04161b450dfa687b7 292 Gene3D G3DSA:3.40.190.10 172 255 5.0E-12 T 22-04-2016 PP4_RS17785 717b5b441f1c91e04161b450dfa687b7 292 Gene3D G3DSA:3.40.190.10 91 171 8.1E-10 T 22-04-2016 PP4_RS17785 717b5b441f1c91e04161b450dfa687b7 292 Pfam PF03466 LysR substrate binding domain 88 291 1.5E-27 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS17785 717b5b441f1c91e04161b450dfa687b7 292 PANTHER PTHR30126:SF29 3 289 7.8E-78 T 22-04-2016 PP4_RS12940 3d2c092da627521c299e74321a2ca707 574 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 417 439 8.8E-31 T 22-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) PP4_RS12940 3d2c092da627521c299e74321a2ca707 574 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 300 317 8.8E-31 T 22-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) PP4_RS12940 3d2c092da627521c299e74321a2ca707 574 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 440 460 8.8E-31 T 22-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) PP4_RS12940 3d2c092da627521c299e74321a2ca707 574 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 479 496 8.8E-31 T 22-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) PP4_RS12940 3d2c092da627521c299e74321a2ca707 574 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 376 397 8.8E-31 T 22-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) PP4_RS12940 3d2c092da627521c299e74321a2ca707 574 PRINTS PR01790 Senescence marker protein-30 (SMP30) family signature 521 539 8.8E-31 T 22-04-2016 IPR005511 Senescence marker protein-30 (SMP-30) PP4_RS12940 3d2c092da627521c299e74321a2ca707 574 SUPERFAMILY SSF51735 6 248 8.89E-51 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS12940 3d2c092da627521c299e74321a2ca707 574 Pfam PF08450 SMP-30/Gluconolaconase/LRE-like region 299 540 1.4E-69 T 22-04-2016 IPR013658 SMP-30/Gluconolactonase/LRE-like region PP4_RS12940 3d2c092da627521c299e74321a2ca707 574 Gene3D G3DSA:3.40.50.720 5 248 8.0E-51 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS12940 3d2c092da627521c299e74321a2ca707 574 PANTHER PTHR10907 286 572 2.2E-60 T 22-04-2016 PP4_RS12940 3d2c092da627521c299e74321a2ca707 574 Gene3D G3DSA:2.120.10.30 289 572 4.5E-74 T 22-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like PP4_RS12940 3d2c092da627521c299e74321a2ca707 574 SUPERFAMILY SSF63829 289 568 1.41E-59 T 22-04-2016 PP4_RS12940 3d2c092da627521c299e74321a2ca707 574 PANTHER PTHR10907:SF47 286 572 2.2E-60 T 22-04-2016 PP4_RS12940 3d2c092da627521c299e74321a2ca707 574 Pfam PF00106 short chain dehydrogenase 10 201 3.4E-33 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS04015 75a0911c3da1907a36c3d62403870810 483 Pfam PF02321 Outer membrane efflux protein 289 469 1.9E-24 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PP4_RS04015 75a0911c3da1907a36c3d62403870810 483 Pfam PF02321 Outer membrane efflux protein 66 257 8.9E-24 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PP4_RS04015 75a0911c3da1907a36c3d62403870810 483 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 11 471 1.5E-113 T 22-04-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 PP4_RS04015 75a0911c3da1907a36c3d62403870810 483 SUPERFAMILY SSF56954 2 33 2.75E-104 T 22-04-2016 PP4_RS04015 75a0911c3da1907a36c3d62403870810 483 SUPERFAMILY SSF56954 57 474 2.75E-104 T 22-04-2016 PP4_RS04015 75a0911c3da1907a36c3d62403870810 483 Gene3D G3DSA:2.20.200.10 321 356 3.1E-20 T 22-04-2016 PP4_RS04015 75a0911c3da1907a36c3d62403870810 483 Gene3D G3DSA:2.20.200.10 102 146 3.1E-20 T 22-04-2016 PP4_RS04015 75a0911c3da1907a36c3d62403870810 483 Gene3D G3DSA:1.20.1600.10 358 472 3.3E-93 T 22-04-2016 PP4_RS04015 75a0911c3da1907a36c3d62403870810 483 Gene3D G3DSA:1.20.1600.10 147 320 3.3E-93 T 22-04-2016 PP4_RS04015 75a0911c3da1907a36c3d62403870810 483 Gene3D G3DSA:1.20.1600.10 55 92 3.3E-93 T 22-04-2016 PP4_RS04015 75a0911c3da1907a36c3d62403870810 483 PANTHER PTHR30203:SF3 10 477 3.3E-146 T 22-04-2016 PP4_RS04015 75a0911c3da1907a36c3d62403870810 483 PANTHER PTHR30203 10 477 3.3E-146 T 22-04-2016 PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 SUPERFAMILY SSF55785 687 794 2.97E-26 T 22-04-2016 IPR000014 PAS domain PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 SMART SM00267 796 968 1.9E-69 T 22-04-2016 IPR000160 GGDEF domain PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 SMART SM00086 385 425 0.36 T 22-04-2016 IPR001610 PAC motif PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 SMART SM00086 509 549 0.0073 T 22-04-2016 IPR001610 PAC motif PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 SMART SM00086 634 674 3.5E-5 T 22-04-2016 IPR001610 PAC motif PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 SMART SM00086 754 796 9.6E-7 T 22-04-2016 IPR001610 PAC motif PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 Gene3D G3DSA:3.30.450.20 293 428 1.0E-19 T 22-04-2016 PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 Pfam PF00990 Diguanylate cyclase, GGDEF domain 807 964 1.6E-51 T 22-04-2016 IPR000160 GGDEF domain PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 SMART SM00052 978 1224 9.2E-112 T 22-04-2016 IPR001633 EAL domain PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 SUPERFAMILY SSF141868 983 1231 5.75E-87 T 22-04-2016 IPR001633 EAL domain PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 Pfam PF08447 PAS fold 336 411 2.7E-10 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 SUPERFAMILY SSF55073 812 969 6.98E-52 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 38 255 3.9E-42 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 SUPERFAMILY SSF55785 296 423 1.68E-19 T 22-04-2016 IPR000014 PAS domain PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 803 967 2.5E-44 T 22-04-2016 IPR000160 GGDEF domain PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 Gene3D G3DSA:3.40.190.10 35 114 1.0E-26 T 22-04-2016 PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 Gene3D G3DSA:3.40.190.10 217 256 1.0E-26 T 22-04-2016 PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 PANTHER PTHR10799:SF774 603 714 8.4E-88 T 22-04-2016 PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 PANTHER PTHR10799:SF774 840 1058 8.4E-88 T 22-04-2016 PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 PANTHER PTHR10799:SF774 1164 1183 8.4E-88 T 22-04-2016 PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 SMART SM00091 437 504 4.8E-4 T 22-04-2016 IPR000014 PAS domain PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 SMART SM00091 561 628 7.7E-4 T 22-04-2016 IPR000014 PAS domain PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 SMART SM00091 682 748 4.4E-7 T 22-04-2016 IPR000014 PAS domain PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 SMART SM00091 311 379 1.3E-5 T 22-04-2016 IPR000014 PAS domain PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 Pfam PF13426 PAS domain 448 548 2.2E-7 T 22-04-2016 IPR000014 PAS domain PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 Pfam PF13426 PAS domain 571 673 1.1E-7 T 22-04-2016 IPR000014 PAS domain PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 Pfam PF13426 PAS domain 693 794 2.2E-14 T 22-04-2016 IPR000014 PAS domain PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 Pfam PF00563 EAL domain 985 1219 3.8E-74 T 22-04-2016 IPR001633 EAL domain PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 PANTHER PTHR10799 603 714 8.4E-88 T 22-04-2016 PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 PANTHER PTHR10799 840 1058 8.4E-88 T 22-04-2016 PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 PANTHER PTHR10799 1164 1183 8.4E-88 T 22-04-2016 PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 SUPERFAMILY SSF55785 546 672 1.09E-20 T 22-04-2016 IPR000014 PAS domain PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 SUPERFAMILY SSF53850 38 255 8.15E-52 T 22-04-2016 PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 SMART SM00062 37 257 1.2E-34 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 435 556 1.2E-11 T 22-04-2016 IPR000014 PAS domain PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 558 681 4.5E-15 T 22-04-2016 IPR000014 PAS domain PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 307 432 9.1E-13 T 22-04-2016 IPR000014 PAS domain PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 686 803 1.7E-19 T 22-04-2016 IPR000014 PAS domain PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 Gene3D G3DSA:3.40.190.10 115 213 2.9E-13 T 22-04-2016 PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 Gene3D G3DSA:3.30.70.270 808 975 1.9E-59 T 22-04-2016 PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 Gene3D G3DSA:3.30.450.20 547 671 1.9E-21 T 22-04-2016 PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 Gene3D G3DSA:3.30.450.20 429 546 9.0E-21 T 22-04-2016 PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 Gene3D G3DSA:3.20.20.450 982 1228 3.9E-97 T 22-04-2016 IPR001633 EAL domain PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 Gene3D G3DSA:3.30.450.20 672 790 3.1E-29 T 22-04-2016 PP4_RS02125 d5dc5820b30e9b46d51957f61221cb36 1247 SUPERFAMILY SSF55785 422 547 1.09E-18 T 22-04-2016 IPR000014 PAS domain PP4_RS01295 b33fbfb78e9d3cb7892a35875b98d75b 442 SUPERFAMILY SSF56935 176 357 2.78E-5 T 22-04-2016 PP4_RS01295 b33fbfb78e9d3cb7892a35875b98d75b 442 PANTHER PTHR34596 6 257 1.5E-122 T 22-04-2016 PP4_RS01295 b33fbfb78e9d3cb7892a35875b98d75b 442 PANTHER PTHR34596 273 442 1.5E-122 T 22-04-2016 PP4_RS01295 b33fbfb78e9d3cb7892a35875b98d75b 442 Gene3D G3DSA:2.40.160.10 27 442 3.4E-140 T 22-04-2016 IPR023614 Porin domain PP4_RS01295 b33fbfb78e9d3cb7892a35875b98d75b 442 Pfam PF03573 outer membrane porin, OprD family 22 441 2.1E-131 T 22-04-2016 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 PP4_RS24600 04478e5e3371d4da5588d255b8a95838 438 SMART SM00014 282 393 8.4E-18 T 22-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PP4_RS24600 04478e5e3371d4da5588d255b8a95838 438 SUPERFAMILY SSF48317 169 420 8.63E-46 T 22-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PP4_RS24600 04478e5e3371d4da5588d255b8a95838 438 Gene3D G3DSA:1.20.144.10 226 403 3.1E-34 T 22-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PP4_RS24600 04478e5e3371d4da5588d255b8a95838 438 PANTHER PTHR30353 1 415 2.7E-176 T 22-04-2016 IPR032818 DedA family PP4_RS24600 04478e5e3371d4da5588d255b8a95838 438 Pfam PF09335 SNARE associated Golgi protein 39 162 3.7E-18 T 22-04-2016 IPR032816 SNARE associated Golgi protein PP4_RS24600 04478e5e3371d4da5588d255b8a95838 438 PANTHER PTHR30353:SF5 1 415 2.7E-176 T 22-04-2016 PP4_RS24600 04478e5e3371d4da5588d255b8a95838 438 Pfam PF01569 PAP2 superfamily 286 398 2.9E-20 T 22-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PP4_RS18410 88b39354bbacf4fa3ba97a918737ac1c 119 SUPERFAMILY SSF51182 21 117 2.88E-17 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS18410 88b39354bbacf4fa3ba97a918737ac1c 119 Gene3D G3DSA:2.60.120.10 21 118 5.2E-24 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS18410 88b39354bbacf4fa3ba97a918737ac1c 119 Pfam PF05899 Protein of unknown function (DUF861) 49 115 5.9E-11 T 22-04-2016 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 PP4_RS04755 611f4a7aa0ba5c73ca6c9afcf42f3379 384 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 37 359 2.4E-75 T 22-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 PP4_RS04755 611f4a7aa0ba5c73ca6c9afcf42f3379 384 Pfam PF00529 HlyD membrane-fusion protein of T1SS 36 344 1.1E-8 T 22-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 PP4_RS04755 611f4a7aa0ba5c73ca6c9afcf42f3379 384 SUPERFAMILY SSF111369 48 284 4.71E-93 T 22-04-2016 PP4_RS04755 611f4a7aa0ba5c73ca6c9afcf42f3379 384 PANTHER PTHR30158 1 383 2.0E-159 T 22-04-2016 PP4_RS04755 611f4a7aa0ba5c73ca6c9afcf42f3379 384 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 60 277 2.0E-14 T 22-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PP4_RS04755 611f4a7aa0ba5c73ca6c9afcf42f3379 384 PANTHER PTHR30158:SF3 1 383 2.0E-159 T 22-04-2016 PP4_RS04755 611f4a7aa0ba5c73ca6c9afcf42f3379 384 Gene3D G3DSA:2.40.50.100 156 191 1.2E-25 T 22-04-2016 PP4_RS04755 611f4a7aa0ba5c73ca6c9afcf42f3379 384 Gene3D G3DSA:2.40.50.100 62 95 1.2E-25 T 22-04-2016 PP4_RS14965 5b607bd6a191a49042c8c399d4a50f56 224 Pfam PF01730 UreF 41 181 1.1E-30 T 22-04-2016 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 PP4_RS14965 5b607bd6a191a49042c8c399d4a50f56 224 Hamap MF_01385 Urease accessory protein UreF [ureF]. 6 224 30.743 T 22-04-2016 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 PP4_RS14965 5b607bd6a191a49042c8c399d4a50f56 224 PANTHER PTHR33620 1 224 1.4E-24 T 22-04-2016 PP4_RS14965 5b607bd6a191a49042c8c399d4a50f56 224 PIRSF PIRSF009467 3 224 1.5E-64 T 22-04-2016 IPR002639 Urease accessory protein UreF GO:0006807|GO:0016151 PP4_RS25170 5ee9483075429a4567ddfd52b7e784fc 110 PANTHER PTHR30561:SF1 1 110 7.7E-50 T 22-04-2016 PP4_RS25170 5ee9483075429a4567ddfd52b7e784fc 110 PANTHER PTHR30561 1 110 7.7E-50 T 22-04-2016 PP4_RS25170 5ee9483075429a4567ddfd52b7e784fc 110 SUPERFAMILY SSF103481 6 106 3.79E-19 T 22-04-2016 PP4_RS25170 5ee9483075429a4567ddfd52b7e784fc 110 Pfam PF00893 Small Multidrug Resistance protein 3 94 4.5E-26 T 22-04-2016 IPR000390 Small multidrug resistance protein family GO:0016021 PP4_RS18245 999d631226e845a8d0229bfd29f0c2e8 160 Pfam PF03168 Late embryogenesis abundant protein 56 146 5.4E-19 T 22-04-2016 IPR004864 Late embryogenesis abundant protein, LEA-14 PP4_RS18245 999d631226e845a8d0229bfd29f0c2e8 160 Gene3D G3DSA:2.60.40.10 49 108 1.0E-7 T 22-04-2016 IPR013783 Immunoglobulin-like fold PP4_RS18245 999d631226e845a8d0229bfd29f0c2e8 160 SUPERFAMILY SSF117070 12 156 8.5E-30 T 22-04-2016 PP4_RS18245 999d631226e845a8d0229bfd29f0c2e8 160 SMART SM00769 35 155 2.1E-40 T 22-04-2016 IPR013990 Water stress and hypersensitive response domain GO:0009269 PP4_RS09655 de373ddcbadd978aec517cf3a49032df 219 SUPERFAMILY SSF56529 11 217 5.1E-62 T 22-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 PP4_RS09655 de373ddcbadd978aec517cf3a49032df 219 TIGRFAM TIGR02305 HpaG-N-term: 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit 11 216 2.5E-89 T 22-04-2016 IPR012686 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit GO:0008704|GO:0018800 KEGG: 00350+5.3.3.10+4.1.1.68|UniPathway: UPA00208|UniPathway: UPA00208 PP4_RS09655 de373ddcbadd978aec517cf3a49032df 219 PANTHER PTHR11820 11 219 7.1E-90 T 22-04-2016 PP4_RS09655 de373ddcbadd978aec517cf3a49032df 219 PANTHER PTHR11820:SF8 11 219 7.1E-90 T 22-04-2016 PP4_RS09655 de373ddcbadd978aec517cf3a49032df 219 Gene3D G3DSA:3.90.850.10 12 218 5.4E-60 T 22-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 PP4_RS09655 de373ddcbadd978aec517cf3a49032df 219 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 14 216 1.6E-53 T 22-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 PP4_RS03600 9f8d836f338ec3d5bc6fc4981cdf5c3b 361 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 10 361 6.3E-175 T 22-04-2016 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 PP4_RS03600 9f8d836f338ec3d5bc6fc4981cdf5c3b 361 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 343 353 - T 22-04-2016 IPR030391 RNA methyltransferase TrmA, conserved site PP4_RS03600 9f8d836f338ec3d5bc6fc4981cdf5c3b 361 SUPERFAMILY SSF53335 9 360 2.96E-56 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS03600 9f8d836f338ec3d5bc6fc4981cdf5c3b 361 TIGRFAM TIGR02143 trmA_only: tRNA (uracil(54)-C(5))-methyltransferase 9 361 9.5E-176 T 22-04-2016 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 PP4_RS03600 9f8d836f338ec3d5bc6fc4981cdf5c3b 361 Hamap MF_01011 tRNA/tmRNA (uracil-C(5))-methyltransferase [trmA]. 3 361 41.2 T 22-04-2016 IPR011869 tRNA/tmRNA (uracil-C(5))-methyltransferase, TrmA GO:0006396|GO:0030697 PP4_RS03600 9f8d836f338ec3d5bc6fc4981cdf5c3b 361 PANTHER PTHR11061:SF25 8 361 7.0E-186 T 22-04-2016 PP4_RS03600 9f8d836f338ec3d5bc6fc4981cdf5c3b 361 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 294 323 - T 22-04-2016 IPR030390 RNA methyltransferase TrmA, active site PP4_RS03600 9f8d836f338ec3d5bc6fc4981cdf5c3b 361 Gene3D G3DSA:3.40.50.150 151 360 1.9E-44 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS03600 9f8d836f338ec3d5bc6fc4981cdf5c3b 361 PANTHER PTHR11061 8 361 7.0E-186 T 22-04-2016 PP4_RS07195 ecb52436236e2268e5fdb05174b8d759 339 PANTHER PTHR30534 1 339 3.8E-111 T 22-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 PP4_RS07195 ecb52436236e2268e5fdb05174b8d759 339 Pfam PF01706 FliG C-terminal domain 224 330 4.8E-41 T 22-04-2016 IPR023087 Flagellar motor switch protein FliG, C-terminal PP4_RS07195 ecb52436236e2268e5fdb05174b8d759 339 Gene3D G3DSA:1.10.220.30 80 200 4.4E-29 T 22-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical PP4_RS07195 ecb52436236e2268e5fdb05174b8d759 339 Gene3D G3DSA:1.10.220.30 201 339 7.1E-42 T 22-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical PP4_RS07195 ecb52436236e2268e5fdb05174b8d759 339 Gene3D G3DSA:1.10.220.30 14 79 2.0E-16 T 22-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical PP4_RS07195 ecb52436236e2268e5fdb05174b8d759 339 SUPERFAMILY SSF48029 13 123 3.92E-25 T 22-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical PP4_RS07195 ecb52436236e2268e5fdb05174b8d759 339 PANTHER PTHR30534:SF0 1 339 3.8E-111 T 22-04-2016 PP4_RS07195 ecb52436236e2268e5fdb05174b8d759 339 Pfam PF14842 FliG N-terminal domain 10 110 2.9E-33 T 22-04-2016 IPR028263 Flagellar motor switch protein FliG, N-terminal domain PP4_RS07195 ecb52436236e2268e5fdb05174b8d759 339 SUPERFAMILY SSF48029 120 331 8.63E-67 T 22-04-2016 IPR011002 Flagellar motor switch protein FliG, alpha-helical PP4_RS07195 ecb52436236e2268e5fdb05174b8d759 339 PIRSF PIRSF003161 5 339 1.6E-116 T 22-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 PP4_RS07195 ecb52436236e2268e5fdb05174b8d759 339 TIGRFAM TIGR00207 fliG: flagellar motor switch protein FliG 9 337 4.2E-101 T 22-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 PP4_RS07195 ecb52436236e2268e5fdb05174b8d759 339 Pfam PF14841 FliG middle domain 121 194 3.8E-24 T 22-04-2016 IPR032779 Flagellar motor switch protein FliG, middle domain PP4_RS07195 ecb52436236e2268e5fdb05174b8d759 339 PRINTS PR00954 Flagellar motor switch protein FliG signature 40 66 4.8E-64 T 22-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 PP4_RS07195 ecb52436236e2268e5fdb05174b8d759 339 PRINTS PR00954 Flagellar motor switch protein FliG signature 232 252 4.8E-64 T 22-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 PP4_RS07195 ecb52436236e2268e5fdb05174b8d759 339 PRINTS PR00954 Flagellar motor switch protein FliG signature 120 143 4.8E-64 T 22-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 PP4_RS07195 ecb52436236e2268e5fdb05174b8d759 339 PRINTS PR00954 Flagellar motor switch protein FliG signature 201 226 4.8E-64 T 22-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 PP4_RS07195 ecb52436236e2268e5fdb05174b8d759 339 PRINTS PR00954 Flagellar motor switch protein FliG signature 278 304 4.8E-64 T 22-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 PP4_RS07195 ecb52436236e2268e5fdb05174b8d759 339 PRINTS PR00954 Flagellar motor switch protein FliG signature 11 27 4.8E-64 T 22-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 PP4_RS07195 ecb52436236e2268e5fdb05174b8d759 339 PRINTS PR00954 Flagellar motor switch protein FliG signature 254 274 4.8E-64 T 22-04-2016 IPR000090 Flagellar motor switch protein FliG GO:0003774|GO:0006935|GO:0009288|GO:0071973 PP4_RS16600 3c5124388d6672bbf6d48c609d97fa85 816 Gene3D G3DSA:2.40.170.20 271 816 7.0E-130 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS16600 3c5124388d6672bbf6d48c609d97fa85 816 Pfam PF07715 TonB-dependent Receptor Plug Domain 154 254 3.1E-18 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS16600 3c5124388d6672bbf6d48c609d97fa85 816 Pfam PF00593 TonB dependent receptor 572 814 1.7E-30 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS16600 3c5124388d6672bbf6d48c609d97fa85 816 PANTHER PTHR32552:SF37 146 816 3.3E-220 T 22-04-2016 PP4_RS16600 3c5124388d6672bbf6d48c609d97fa85 816 PANTHER PTHR32552:SF37 19 46 3.3E-220 T 22-04-2016 PP4_RS16600 3c5124388d6672bbf6d48c609d97fa85 816 Pfam PF07660 Secretin and TonB N terminus short domain 68 107 2.5E-8 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS16600 3c5124388d6672bbf6d48c609d97fa85 816 Gene3D G3DSA:2.170.130.10 133 263 5.9E-36 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS16600 3c5124388d6672bbf6d48c609d97fa85 816 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 156 816 4.9E-106 T 22-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 PP4_RS16600 3c5124388d6672bbf6d48c609d97fa85 816 SMART SM00965 59 110 7.6E-11 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS16600 3c5124388d6672bbf6d48c609d97fa85 816 SUPERFAMILY SSF56935 146 816 1.28E-127 T 22-04-2016 PP4_RS16600 3c5124388d6672bbf6d48c609d97fa85 816 PANTHER PTHR32552 146 816 3.3E-220 T 22-04-2016 PP4_RS16600 3c5124388d6672bbf6d48c609d97fa85 816 PANTHER PTHR32552 19 46 3.3E-220 T 22-04-2016 PP4_RS26600 bfb54b467549517de1ebfda9033ad028 906 PANTHER PTHR24220 7 388 1.6E-177 T 22-04-2016 PP4_RS26600 bfb54b467549517de1ebfda9033ad028 906 SUPERFAMILY SSF52540 269 491 1.22E-59 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26600 bfb54b467549517de1ebfda9033ad028 906 Pfam PF00005 ABC transporter 21 168 5.2E-27 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS26600 bfb54b467549517de1ebfda9033ad028 906 Pfam PF00005 ABC transporter 285 428 8.1E-25 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS26600 bfb54b467549517de1ebfda9033ad028 906 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS26600 bfb54b467549517de1ebfda9033ad028 906 SUPERFAMILY SSF52540 5 229 1.82E-51 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26600 bfb54b467549517de1ebfda9033ad028 906 Gene3D G3DSA:3.40.50.300 261 490 2.0E-67 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26600 bfb54b467549517de1ebfda9033ad028 906 Gene3D G3DSA:3.40.50.300 3 230 1.6E-54 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26600 bfb54b467549517de1ebfda9033ad028 906 SMART SM00382 293 484 1.2E-9 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS26600 bfb54b467549517de1ebfda9033ad028 906 SMART SM00382 30 226 3.4E-5 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS26600 bfb54b467549517de1ebfda9033ad028 906 Pfam PF12698 ABC-2 family transporter protein 558 898 1.6E-39 T 22-04-2016 PP4_RS26600 bfb54b467549517de1ebfda9033ad028 906 PANTHER PTHR24220:SF388 7 388 1.6E-177 T 22-04-2016 PP4_RS25640 f3594c4c4e3dde19b1e481ae34438e26 656 Pfam PF00672 HAMP domain 290 358 7.4E-17 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS25640 f3594c4c4e3dde19b1e481ae34438e26 656 SMART SM00304 309 361 6.4E-11 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS25640 f3594c4c4e3dde19b1e481ae34438e26 656 SMART SM00304 368 414 8.7 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS25640 f3594c4c4e3dde19b1e481ae34438e26 656 SMART SM00283 376 655 3.6E-79 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS25640 f3594c4c4e3dde19b1e481ae34438e26 656 PANTHER PTHR32089 283 544 9.5E-131 T 22-04-2016 PP4_RS25640 f3594c4c4e3dde19b1e481ae34438e26 656 PANTHER PTHR32089 560 656 9.5E-131 T 22-04-2016 PP4_RS25640 f3594c4c4e3dde19b1e481ae34438e26 656 PANTHER PTHR32089 245 256 9.5E-131 T 22-04-2016 PP4_RS25640 f3594c4c4e3dde19b1e481ae34438e26 656 Gene3D G3DSA:1.10.287.950 391 626 2.5E-59 T 22-04-2016 PP4_RS25640 f3594c4c4e3dde19b1e481ae34438e26 656 SUPERFAMILY SSF58104 535 656 1.07E-21 T 22-04-2016 PP4_RS25640 f3594c4c4e3dde19b1e481ae34438e26 656 SUPERFAMILY SSF58104 329 536 8.76E-61 T 22-04-2016 PP4_RS25640 f3594c4c4e3dde19b1e481ae34438e26 656 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 438 534 5.6E-36 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS25640 f3594c4c4e3dde19b1e481ae34438e26 656 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 533 654 6.1E-17 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS25640 f3594c4c4e3dde19b1e481ae34438e26 656 Pfam PF16591 Helical bimodular sensor domain 37 285 4.9E-63 T 22-04-2016 IPR032255 Helical bimodular sensor domain PP4_RS25640 f3594c4c4e3dde19b1e481ae34438e26 656 PANTHER PTHR32089:SF64 283 544 9.5E-131 T 22-04-2016 PP4_RS25640 f3594c4c4e3dde19b1e481ae34438e26 656 PANTHER PTHR32089:SF64 560 656 9.5E-131 T 22-04-2016 PP4_RS25640 f3594c4c4e3dde19b1e481ae34438e26 656 PANTHER PTHR32089:SF64 245 256 9.5E-131 T 22-04-2016 PP4_RS25640 f3594c4c4e3dde19b1e481ae34438e26 656 SMART SM01358 37 287 4.0E-61 T 22-04-2016 IPR032255 Helical bimodular sensor domain PP4_RS14990 e5e91fbed385f00f87d575011f1dcd14 100 Hamap MF_00739 Urease subunit gamma [ureA]. 1 100 34.741 T 22-04-2016 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 PP4_RS14990 e5e91fbed385f00f87d575011f1dcd14 100 SUPERFAMILY SSF54111 1 99 2.09E-46 T 22-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 PP4_RS14990 e5e91fbed385f00f87d575011f1dcd14 100 PIRSF PIRSF001223 1 100 2.3E-50 T 22-04-2016 IPR012010 Urease, gamma subunit GO:0009039|GO:0019627 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 PP4_RS14990 e5e91fbed385f00f87d575011f1dcd14 100 TIGRFAM TIGR00193 urease_gam: urease, gamma subunit 1 99 3.0E-50 T 22-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 PP4_RS14990 e5e91fbed385f00f87d575011f1dcd14 100 PANTHER PTHR33569 2 100 6.7E-47 T 22-04-2016 PP4_RS14990 e5e91fbed385f00f87d575011f1dcd14 100 Pfam PF00547 Urease, gamma subunit 1 99 1.7E-48 T 22-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 PP4_RS14990 e5e91fbed385f00f87d575011f1dcd14 100 ProDom PD002319 SUBUNIT GAMMA HYDROLASE UREASE UREA AMIDOHYDROLASE UREASE ALPHA GAMMA/BETA METAL-BINDING 31 99 3.0E-33 T 22-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 PP4_RS14990 e5e91fbed385f00f87d575011f1dcd14 100 Gene3D G3DSA:3.30.280.10 1 99 1.2E-50 T 22-04-2016 IPR002026 Urease, gamma/gamma-beta subunit GO:0016151|GO:0043419 KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 PP4_RS14990 e5e91fbed385f00f87d575011f1dcd14 100 PANTHER PTHR33569:SF1 2 100 6.7E-47 T 22-04-2016 PP4_RS11725 62deb97eb4c4e08f64d597510e818832 223 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 31 44 6.9E-7 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS11725 62deb97eb4c4e08f64d597510e818832 223 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 52 75 6.9E-7 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS11725 62deb97eb4c4e08f64d597510e818832 223 Gene3D G3DSA:1.10.10.60 18 77 1.8E-21 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS11725 62deb97eb4c4e08f64d597510e818832 223 SUPERFAMILY SSF46689 18 96 6.16E-18 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS11725 62deb97eb4c4e08f64d597510e818832 223 PANTHER PTHR30328 18 221 6.1E-100 T 22-04-2016 PP4_RS11725 62deb97eb4c4e08f64d597510e818832 223 PANTHER PTHR30328:SF16 18 221 6.1E-100 T 22-04-2016 PP4_RS11725 62deb97eb4c4e08f64d597510e818832 223 SUPERFAMILY SSF48498 97 222 6.88E-32 T 22-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal PP4_RS11725 62deb97eb4c4e08f64d597510e818832 223 Gene3D G3DSA:1.10.357.10 80 219 4.6E-25 T 22-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PP4_RS11725 62deb97eb4c4e08f64d597510e818832 223 Pfam PF00440 Bacterial regulatory proteins, tetR family 31 74 1.4E-13 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS07455 c8e51778c10c7fd9abab97bef21a9842 298 Pfam PF00892 EamA-like transporter family 154 282 4.7E-15 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS07455 c8e51778c10c7fd9abab97bef21a9842 298 Pfam PF00892 EamA-like transporter family 9 139 1.5E-9 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS07455 c8e51778c10c7fd9abab97bef21a9842 298 SUPERFAMILY SSF103481 189 288 1.12E-12 T 22-04-2016 PP4_RS07455 c8e51778c10c7fd9abab97bef21a9842 298 PANTHER PTHR22911 6 297 4.1E-72 T 22-04-2016 PP4_RS07455 c8e51778c10c7fd9abab97bef21a9842 298 PANTHER PTHR22911:SF44 6 297 4.1E-72 T 22-04-2016 PP4_RS07455 c8e51778c10c7fd9abab97bef21a9842 298 SUPERFAMILY SSF103481 39 141 2.22E-10 T 22-04-2016 PP4_RS18890 22f6b5688e5f6dfe8cf717a5206b8bfe 191 Pfam PF00072 Response regulator receiver domain 4 110 8.9E-8 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS18890 22f6b5688e5f6dfe8cf717a5206b8bfe 191 PIRSF PIRSF036382 1 191 9.8E-64 T 22-04-2016 IPR008327 Signal transduction response regulator, antiterminator PP4_RS18890 22f6b5688e5f6dfe8cf717a5206b8bfe 191 Gene3D G3DSA:1.10.10.10 135 190 2.3E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS18890 22f6b5688e5f6dfe8cf717a5206b8bfe 191 SMART SM00448 2 113 5.0E-9 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS18890 22f6b5688e5f6dfe8cf717a5206b8bfe 191 SUPERFAMILY SSF52172 1 184 6.4E-47 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS18890 22f6b5688e5f6dfe8cf717a5206b8bfe 191 SMART SM01012 129 184 9.4E-19 T 22-04-2016 IPR005561 ANTAR domain GO:0003723 PP4_RS18890 22f6b5688e5f6dfe8cf717a5206b8bfe 191 Gene3D G3DSA:3.40.50.2300 1 119 1.1E-14 T 22-04-2016 PP4_RS18890 22f6b5688e5f6dfe8cf717a5206b8bfe 191 Pfam PF03861 ANTAR domain 134 184 1.7E-17 T 22-04-2016 IPR005561 ANTAR domain GO:0003723 PP4_RS18890 22f6b5688e5f6dfe8cf717a5206b8bfe 191 PANTHER PTHR26402 2 189 1.3E-68 T 22-04-2016 PP4_RS18890 22f6b5688e5f6dfe8cf717a5206b8bfe 191 PANTHER PTHR26402:SF567 2 189 1.3E-68 T 22-04-2016 PP4_RS07895 c57aa4ed25434918638f0bd170828835 471 Pfam PF02321 Outer membrane efflux protein 285 464 4.6E-25 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PP4_RS07895 c57aa4ed25434918638f0bd170828835 471 Pfam PF02321 Outer membrane efflux protein 64 258 1.6E-22 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PP4_RS07895 c57aa4ed25434918638f0bd170828835 471 Gene3D G3DSA:1.20.1600.10 50 468 1.7E-102 T 22-04-2016 PP4_RS07895 c57aa4ed25434918638f0bd170828835 471 SUPERFAMILY SSF56954 7 468 2.62E-99 T 22-04-2016 PP4_RS07895 c57aa4ed25434918638f0bd170828835 471 PANTHER PTHR30203 31 471 9.1E-174 T 22-04-2016 PP4_RS07895 c57aa4ed25434918638f0bd170828835 471 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 13 466 7.4E-105 T 22-04-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 PP4_RS07895 c57aa4ed25434918638f0bd170828835 471 PANTHER PTHR30203:SF10 31 471 9.1E-174 T 22-04-2016 PP4_RS19905 fa2e4c2bf2fa707b0b4c187e1340c49c 363 Pfam PF01264 Chorismate synthase 10 344 2.1E-137 T 22-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 PP4_RS19905 fa2e4c2bf2fa707b0b4c187e1340c49c 363 TIGRFAM TIGR00033 aroC: chorismate synthase 10 349 3.7E-137 T 22-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 PP4_RS19905 fa2e4c2bf2fa707b0b4c187e1340c49c 363 SUPERFAMILY SSF103263 4 353 7.33E-146 T 22-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 PP4_RS19905 fa2e4c2bf2fa707b0b4c187e1340c49c 363 ProSitePatterns PS00787 Chorismate synthase signature 1. 16 31 - T 22-04-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 PP4_RS19905 fa2e4c2bf2fa707b0b4c187e1340c49c 363 Hamap MF_00300 Chorismate synthase [aroC]. 10 351 36.179 T 22-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 PP4_RS19905 fa2e4c2bf2fa707b0b4c187e1340c49c 363 ProSitePatterns PS00789 Chorismate synthase signature 3. 318 334 - T 22-04-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 PP4_RS19905 fa2e4c2bf2fa707b0b4c187e1340c49c 363 PIRSF PIRSF001456 3 359 4.9E-135 T 22-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 PP4_RS19905 fa2e4c2bf2fa707b0b4c187e1340c49c 363 PANTHER PTHR21085 2 350 1.3E-208 T 22-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 PP4_RS19905 fa2e4c2bf2fa707b0b4c187e1340c49c 363 ProSitePatterns PS00788 Chorismate synthase signature 2. 124 140 - T 22-04-2016 IPR020541 Chorismate synthase, conserved site GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 PP4_RS19905 fa2e4c2bf2fa707b0b4c187e1340c49c 363 Gene3D G3DSA:3.60.150.10 9 354 1.3E-154 T 22-04-2016 IPR000453 Chorismate synthase GO:0004107|GO:0009073 KEGG: 00400+4.2.3.5|MetaCyc: PWY-6163|UniPathway: UPA00053 PP4_RS11575 688737e096d07325f55217bfeeb4bdf0 157 PANTHER PTHR18964:SF141 13 142 2.8E-31 T 22-04-2016 PP4_RS11575 688737e096d07325f55217bfeeb4bdf0 157 SUPERFAMILY SSF46785 12 143 9.97E-31 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS11575 688737e096d07325f55217bfeeb4bdf0 157 SMART SM00347 31 131 9.6E-20 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS11575 688737e096d07325f55217bfeeb4bdf0 157 ProSitePatterns PS01117 MarR-type HTH domain signature. 70 104 - T 22-04-2016 IPR023187 Transcriptional regulator MarR-type, conserved site PP4_RS11575 688737e096d07325f55217bfeeb4bdf0 157 PANTHER PTHR18964 13 142 2.8E-31 T 22-04-2016 PP4_RS11575 688737e096d07325f55217bfeeb4bdf0 157 PRINTS PR00598 Bacterial regulatory protein MarR family signature 72 87 5.9E-16 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS11575 688737e096d07325f55217bfeeb4bdf0 157 PRINTS PR00598 Bacterial regulatory protein MarR family signature 91 107 5.9E-16 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS11575 688737e096d07325f55217bfeeb4bdf0 157 PRINTS PR00598 Bacterial regulatory protein MarR family signature 55 71 5.9E-16 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS11575 688737e096d07325f55217bfeeb4bdf0 157 PRINTS PR00598 Bacterial regulatory protein MarR family signature 121 141 5.9E-16 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS11575 688737e096d07325f55217bfeeb4bdf0 157 Pfam PF01047 MarR family 39 96 1.3E-13 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS11575 688737e096d07325f55217bfeeb4bdf0 157 Gene3D G3DSA:1.10.10.10 13 142 6.2E-33 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS19420 72c8f860d1e48bd8bc516935b0503082 351 PANTHER PTHR30386 1 345 1.5E-118 T 22-04-2016 PP4_RS19420 72c8f860d1e48bd8bc516935b0503082 351 SUPERFAMILY SSF111369 104 174 1.96E-5 T 22-04-2016 PP4_RS19420 72c8f860d1e48bd8bc516935b0503082 351 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 44 286 9.6E-20 T 22-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PP4_RS19420 72c8f860d1e48bd8bc516935b0503082 351 SUPERFAMILY SSF111369 186 284 2.09E-12 T 22-04-2016 PP4_RS19420 72c8f860d1e48bd8bc516935b0503082 351 Gene3D G3DSA:2.40.50.100 210 243 6.5E-17 T 22-04-2016 PP4_RS19420 72c8f860d1e48bd8bc516935b0503082 351 Gene3D G3DSA:2.40.50.100 47 79 6.5E-17 T 22-04-2016 PP4_RS19420 72c8f860d1e48bd8bc516935b0503082 351 SUPERFAMILY SSF111369 45 105 1.03E-5 T 22-04-2016 PP4_RS19420 72c8f860d1e48bd8bc516935b0503082 351 PANTHER PTHR30386:SF7 1 345 1.5E-118 T 22-04-2016 PP4_RS19420 72c8f860d1e48bd8bc516935b0503082 351 Pfam PF00529 HlyD membrane-fusion protein of T1SS 18 339 1.2E-6 T 22-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 PP4_RS18475 3d954a5c12af4ea46619ad3556fa2bd5 417 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 11 339 8.9E-53 T 22-04-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 PP4_RS18475 3d954a5c12af4ea46619ad3556fa2bd5 417 PANTHER PTHR22893 1 346 3.6E-158 T 22-04-2016 PP4_RS18475 3d954a5c12af4ea46619ad3556fa2bd5 417 Gene3D G3DSA:3.20.20.70 3 343 2.3E-112 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS18475 3d954a5c12af4ea46619ad3556fa2bd5 417 SUPERFAMILY SSF51395 5 348 1.47E-102 T 22-04-2016 PP4_RS18475 3d954a5c12af4ea46619ad3556fa2bd5 417 PANTHER PTHR22893:SF6 1 346 3.6E-158 T 22-04-2016 PP4_RS12995 7294c8f8413a8eae6722b932505fcece 333 SUPERFAMILY SSF53686 21 323 3.4E-89 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PP4_RS12995 7294c8f8413a8eae6722b932505fcece 333 PANTHER PTHR10314:SF17 20 323 4.1E-104 T 22-04-2016 PP4_RS12995 7294c8f8413a8eae6722b932505fcece 333 PANTHER PTHR10314 20 323 4.1E-104 T 22-04-2016 PP4_RS12995 7294c8f8413a8eae6722b932505fcece 333 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 33 320 1.3E-75 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PP4_RS12995 7294c8f8413a8eae6722b932505fcece 333 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 58 71 - T 22-04-2016 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 PP4_RS12995 7294c8f8413a8eae6722b932505fcece 333 Gene3D G3DSA:3.40.50.1100 85 330 1.8E-65 T 22-04-2016 PP4_RS17770 bd39add24decf5b91a1c57ebd993aa9f 222 SUPERFAMILY SSF46785 20 85 5.36E-13 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS17770 bd39add24decf5b91a1c57ebd993aa9f 222 Pfam PF07729 FCD domain 92 213 8.2E-19 T 22-04-2016 IPR011711 GntR, C-terminal PP4_RS17770 bd39add24decf5b91a1c57ebd993aa9f 222 Gene3D G3DSA:1.10.10.10 15 77 1.8E-16 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS17770 bd39add24decf5b91a1c57ebd993aa9f 222 SMART SM00895 91 214 5.6E-15 T 22-04-2016 IPR011711 GntR, C-terminal PP4_RS17770 bd39add24decf5b91a1c57ebd993aa9f 222 SUPERFAMILY SSF48008 87 218 7.06E-24 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PP4_RS17770 bd39add24decf5b91a1c57ebd993aa9f 222 Pfam PF00392 Bacterial regulatory proteins, gntR family 20 75 9.8E-13 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS17770 bd39add24decf5b91a1c57ebd993aa9f 222 PANTHER PTHR11751 21 107 7.8E-13 T 22-04-2016 PP4_RS17770 bd39add24decf5b91a1c57ebd993aa9f 222 SMART SM00345 23 81 3.1E-7 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS17770 bd39add24decf5b91a1c57ebd993aa9f 222 Gene3D G3DSA:1.20.120.530 84 219 1.2E-27 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PP4_RS27415 82704e1c061b16f135d2a9e5a0ae73c7 263 PANTHER PTHR13696 1 261 8.3E-93 T 22-04-2016 PP4_RS27415 82704e1c061b16f135d2a9e5a0ae73c7 263 PANTHER PTHR13696:SF52 1 261 8.3E-93 T 22-04-2016 PP4_RS27415 82704e1c061b16f135d2a9e5a0ae73c7 263 Gene3D G3DSA:3.40.50.300 3 254 3.0E-71 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS27415 82704e1c061b16f135d2a9e5a0ae73c7 263 Pfam PF13614 AAA domain 3 178 8.6E-65 T 22-04-2016 IPR025669 AAA domain PP4_RS27415 82704e1c061b16f135d2a9e5a0ae73c7 263 SUPERFAMILY SSF52540 1 253 6.75E-68 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS19755 aea33a91c0bf8e5900902285cd272a3e 283 Gene3D G3DSA:1.10.10.10 8 90 1.1E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS19755 aea33a91c0bf8e5900902285cd272a3e 283 SUPERFAMILY SSF53850 96 282 4.16E-25 T 22-04-2016 PP4_RS19755 aea33a91c0bf8e5900902285cd272a3e 283 Gene3D G3DSA:3.40.190.10 96 187 1.3E-16 T 22-04-2016 PP4_RS19755 aea33a91c0bf8e5900902285cd272a3e 283 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 69 5.8E-20 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS19755 aea33a91c0bf8e5900902285cd272a3e 283 PANTHER PTHR30579:SF6 2 282 2.6E-140 T 22-04-2016 PP4_RS19755 aea33a91c0bf8e5900902285cd272a3e 283 Pfam PF03466 LysR substrate binding domain 96 276 4.8E-23 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS19755 aea33a91c0bf8e5900902285cd272a3e 283 PANTHER PTHR30579 2 282 2.6E-140 T 22-04-2016 PP4_RS19755 aea33a91c0bf8e5900902285cd272a3e 283 SUPERFAMILY SSF46785 6 116 1.62E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS19755 aea33a91c0bf8e5900902285cd272a3e 283 Gene3D G3DSA:3.40.190.10 188 237 9.9E-6 T 22-04-2016 PP4_RS20555 60293ae6ba75a33631e88a241add0faf 494 Pfam PF02646 RmuC family 175 466 2.2E-102 T 22-04-2016 IPR003798 DNA recombination RmuC PP4_RS20555 60293ae6ba75a33631e88a241add0faf 494 PANTHER PTHR30563 22 480 1.6E-114 T 22-04-2016 PP4_RS08925 fbd31bdfed7f3d169b197086fcb59f65 319 Pfam PF13410 Glutathione S-transferase, C-terminal domain 189 260 2.1E-9 T 22-04-2016 PP4_RS08925 fbd31bdfed7f3d169b197086fcb59f65 319 SUPERFAMILY SSF52833 35 147 1.97E-14 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS08925 fbd31bdfed7f3d169b197086fcb59f65 319 Gene3D G3DSA:3.40.30.10 23 156 2.2E-18 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS08925 fbd31bdfed7f3d169b197086fcb59f65 319 PANTHER PTHR32419 1 311 4.1E-167 T 22-04-2016 IPR016639 Glutathione S-transferase (GST) KEGG: 00480+2.5.1.18|KEGG: 00980+2.5.1.18|KEGG: 00982+2.5.1.18|MetaCyc: PWY-4061|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7533 PP4_RS08925 fbd31bdfed7f3d169b197086fcb59f65 319 PANTHER PTHR32419:SF6 1 311 4.1E-167 T 22-04-2016 PP4_RS08925 fbd31bdfed7f3d169b197086fcb59f65 319 Pfam PF13409 Glutathione S-transferase, N-terminal domain 48 143 1.3E-21 T 22-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 PP4_RS08925 fbd31bdfed7f3d169b197086fcb59f65 319 PIRSF PIRSF015753 4 309 1.7E-129 T 22-04-2016 IPR016639 Glutathione S-transferase (GST) KEGG: 00480+2.5.1.18|KEGG: 00980+2.5.1.18|KEGG: 00982+2.5.1.18|MetaCyc: PWY-4061|MetaCyc: PWY-6842|MetaCyc: PWY-7112|MetaCyc: PWY-7533 PP4_RS08925 fbd31bdfed7f3d169b197086fcb59f65 319 SUPERFAMILY SSF47616 172 311 3.06E-33 T 22-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like PP4_RS08925 fbd31bdfed7f3d169b197086fcb59f65 319 Gene3D G3DSA:1.20.1050.10 157 275 1.6E-23 T 22-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like PP4_RS13440 76f6ef1813ff6be2709c8d7ad100acd4 249 SMART SM00893 23 211 3.9E-66 T 22-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 PP4_RS13440 76f6ef1813ff6be2709c8d7ad100acd4 249 Pfam PF01012 Electron transfer flavoprotein domain 29 206 3.7E-45 T 22-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 PP4_RS13440 76f6ef1813ff6be2709c8d7ad100acd4 249 Gene3D G3DSA:3.40.50.620 1 247 1.6E-101 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS13440 76f6ef1813ff6be2709c8d7ad100acd4 249 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 155 175 - T 22-04-2016 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 PP4_RS13440 76f6ef1813ff6be2709c8d7ad100acd4 249 PANTHER PTHR21294:SF8 1 249 3.2E-150 T 22-04-2016 PP4_RS13440 76f6ef1813ff6be2709c8d7ad100acd4 249 PIRSF PIRSF000090 1 249 1.6E-82 T 22-04-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 PP4_RS13440 76f6ef1813ff6be2709c8d7ad100acd4 249 SUPERFAMILY SSF52402 1 242 1.12E-84 T 22-04-2016 PP4_RS13440 76f6ef1813ff6be2709c8d7ad100acd4 249 PANTHER PTHR21294 1 249 3.2E-150 T 22-04-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 PP4_RS06445 77ed04bb5321611e3f31a6ef6ef19767 85 Pfam PF10976 Protein of unknown function (DUF2790) 8 83 2.8E-30 T 22-04-2016 IPR021245 Protein of unknown function DUF2790 PP4_RS04665 ab6c586bd56e233e939f72b6ba3332ab 254 Gene3D G3DSA:3.20.20.370 39 237 5.3E-11 T 22-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 PP4_RS04665 ab6c586bd56e233e939f72b6ba3332ab 254 SUPERFAMILY SSF88713 11 172 6.67E-14 T 22-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 PP4_RS04665 ab6c586bd56e233e939f72b6ba3332ab 254 Pfam PF10096 Uncharacterized protein conserved in bacteria (DUF2334) 11 162 2.8E-30 T 22-04-2016 IPR018763 Protein of unknown function DUF2334 PP4_RS10680 d539eeaa750e7dd72904f535680af642 233 Gene3D G3DSA:3.40.50.360 2 226 3.0E-73 T 22-04-2016 IPR029039 Flavoprotein-like domain PP4_RS10680 d539eeaa750e7dd72904f535680af642 233 Pfam PF02525 Flavodoxin-like fold 2 210 1.4E-55 T 22-04-2016 IPR003680 Flavodoxin-like fold PP4_RS10680 d539eeaa750e7dd72904f535680af642 233 SUPERFAMILY SSF52218 2 230 2.59E-71 T 22-04-2016 IPR029039 Flavoprotein-like domain PP4_RS10680 d539eeaa750e7dd72904f535680af642 233 PANTHER PTHR10204:SF46 1 230 3.7E-137 T 22-04-2016 PP4_RS10680 d539eeaa750e7dd72904f535680af642 233 PANTHER PTHR10204 1 230 3.7E-137 T 22-04-2016 PP4_RS01070 b8b93b4ac7796b43f209b5286dfbe30f 232 PANTHER PTHR24220 25 212 1.3E-47 T 22-04-2016 PP4_RS01070 b8b93b4ac7796b43f209b5286dfbe30f 232 SMART SM00382 29 223 1.3E-7 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS01070 b8b93b4ac7796b43f209b5286dfbe30f 232 Gene3D G3DSA:3.40.50.300 24 211 1.0E-43 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS01070 b8b93b4ac7796b43f209b5286dfbe30f 232 SUPERFAMILY SSF52540 26 210 4.58E-42 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS01070 b8b93b4ac7796b43f209b5286dfbe30f 232 Pfam PF00005 ABC transporter 25 174 9.0E-21 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS24940 8279b4e5f754ffbf2f94a5a1f3bb73f6 248 SUPERFAMILY SSF55315 2 77 1.53E-17 T 22-04-2016 IPR029064 50S ribosomal protein L30e-like PP4_RS24940 8279b4e5f754ffbf2f94a5a1f3bb73f6 248 Gene3D G3DSA:3.30.1330.30 1 77 2.3E-24 T 22-04-2016 IPR029064 50S ribosomal protein L30e-like PP4_RS24940 8279b4e5f754ffbf2f94a5a1f3bb73f6 248 Hamap MF_01887 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [rlmB]. 4 245 43.183 T 22-04-2016 IPR024915 23S rRNA (guanosine-2-O-)-methyltransferase RlmB PP4_RS24940 8279b4e5f754ffbf2f94a5a1f3bb73f6 248 Gene3D G3DSA:3.40.1280.10 92 247 5.6E-55 T 22-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PP4_RS24940 8279b4e5f754ffbf2f94a5a1f3bb73f6 248 PANTHER PTHR12029 3 244 1.1E-77 T 22-04-2016 PP4_RS24940 8279b4e5f754ffbf2f94a5a1f3bb73f6 248 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 4 244 3.6E-82 T 22-04-2016 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 PP4_RS24940 8279b4e5f754ffbf2f94a5a1f3bb73f6 248 SUPERFAMILY SSF75217 69 245 9.16E-48 T 22-04-2016 IPR029028 Alpha/beta knot methyltransferases PP4_RS24940 8279b4e5f754ffbf2f94a5a1f3bb73f6 248 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 7 80 1.9E-20 T 22-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 PP4_RS24940 8279b4e5f754ffbf2f94a5a1f3bb73f6 248 Pfam PF00588 SpoU rRNA Methylase family 98 238 4.3E-39 T 22-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 PP4_RS24940 8279b4e5f754ffbf2f94a5a1f3bb73f6 248 SMART SM00967 6 81 1.8E-21 T 22-04-2016 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 PP4_RS05805 bd16d528f7ed8e1db1fdf5372de757a8 430 SUPERFAMILY SSF53474 220 417 2.23E-23 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS05805 bd16d528f7ed8e1db1fdf5372de757a8 430 PIRSF PIRSF029063 1 425 1.4E-148 T 22-04-2016 IPR011225 Type IV secretory pathway, VirJ component PP4_RS05805 bd16d528f7ed8e1db1fdf5372de757a8 430 Gene3D G3DSA:3.40.50.1820 273 337 1.1E-9 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS05805 bd16d528f7ed8e1db1fdf5372de757a8 430 Pfam PF06057 Bacterial virulence protein (VirJ) 232 420 5.8E-76 T 22-04-2016 IPR010333 Bacterial virulence PP4_RS04860 3f120da2b63af4a7710b5aa133a4c18d 404 PANTHER PTHR13369 167 372 5.6E-27 T 22-04-2016 PP4_RS04860 3f120da2b63af4a7710b5aa133a4c18d 404 Pfam PF13679 Methyltransferase domain 167 304 2.2E-26 T 22-04-2016 IPR025714 Methyltransferase domain PP4_RS04860 3f120da2b63af4a7710b5aa133a4c18d 404 Gene3D G3DSA:3.40.50.150 189 262 3.0E-10 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS04860 3f120da2b63af4a7710b5aa133a4c18d 404 SUPERFAMILY SSF53335 177 315 7.99E-16 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS03330 bfd56d3f6de8e4ff9378a143d320770d 101 PANTHER PTHR14552 1 101 7.9E-25 T 22-04-2016 PP4_RS03330 bfd56d3f6de8e4ff9378a143d320770d 101 Pfam PF12643 MazG-like family 31 97 4.4E-9 T 22-04-2016 IPR025984 MazG-like domain KEGG: 00240+3.6.1.12 PP4_RS03330 bfd56d3f6de8e4ff9378a143d320770d 101 PIRSF PIRSF029826 1 101 8.2E-37 T 22-04-2016 IPR011394 NTP Pyrophosphohydrolase MazG-related, RS21-C6 PP4_RS03330 bfd56d3f6de8e4ff9378a143d320770d 101 Gene3D G3DSA:1.10.287.1080 1 92 1.9E-19 T 22-04-2016 PP4_RS03330 bfd56d3f6de8e4ff9378a143d320770d 101 SUPERFAMILY SSF101386 1 99 1.28E-29 T 22-04-2016 PP4_RS01175 6f4811dbcf9f23f0fd1046c273fc634d 778 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 761 778 - T 22-04-2016 IPR010917 TonB-dependent receptor, conserved site PP4_RS01175 6f4811dbcf9f23f0fd1046c273fc634d 778 Gene3D G3DSA:2.170.130.10 42 179 5.4E-30 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS01175 6f4811dbcf9f23f0fd1046c273fc634d 778 Pfam PF07715 TonB-dependent Receptor Plug Domain 63 170 4.9E-16 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS01175 6f4811dbcf9f23f0fd1046c273fc634d 778 Gene3D G3DSA:2.40.170.20 180 778 2.1E-84 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS01175 6f4811dbcf9f23f0fd1046c273fc634d 778 SUPERFAMILY SSF56935 41 778 4.27E-118 T 22-04-2016 PP4_RS01175 6f4811dbcf9f23f0fd1046c273fc634d 778 PANTHER PTHR32552:SF33 44 467 1.7E-290 T 22-04-2016 PP4_RS01175 6f4811dbcf9f23f0fd1046c273fc634d 778 PANTHER PTHR32552:SF33 499 778 1.7E-290 T 22-04-2016 PP4_RS01175 6f4811dbcf9f23f0fd1046c273fc634d 778 PANTHER PTHR32552 44 467 1.7E-290 T 22-04-2016 PP4_RS01175 6f4811dbcf9f23f0fd1046c273fc634d 778 PANTHER PTHR32552 499 778 1.7E-290 T 22-04-2016 PP4_RS10875 dababb0a00cbb61abc2fa6b0b1488165 452 PANTHER PTHR37944:SF1 17 452 2.8E-153 T 22-04-2016 PP4_RS10875 dababb0a00cbb61abc2fa6b0b1488165 452 Pfam PF04966 Carbohydrate-selective porin, OprB family 80 452 7.4E-108 T 22-04-2016 IPR007049 Carbohydrate-selective porin OprB GO:0005215|GO:0006810|GO:0016021 PP4_RS10875 dababb0a00cbb61abc2fa6b0b1488165 452 PANTHER PTHR37944 17 452 2.8E-153 T 22-04-2016 PP4_RS19025 ea99c89f02b532bb7a23b8db8669b552 379 Pfam PF13533 Biotin-lipoyl like 63 110 4.0E-13 T 22-04-2016 PP4_RS19025 ea99c89f02b532bb7a23b8db8669b552 379 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 358 373 1.9E-11 T 22-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 PP4_RS19025 ea99c89f02b532bb7a23b8db8669b552 379 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 286 310 1.9E-11 T 22-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 PP4_RS19025 ea99c89f02b532bb7a23b8db8669b552 379 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 73 93 1.9E-11 T 22-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 PP4_RS19025 ea99c89f02b532bb7a23b8db8669b552 379 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 254 275 1.9E-11 T 22-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 PP4_RS19025 ea99c89f02b532bb7a23b8db8669b552 379 PANTHER PTHR30386 1 371 3.1E-92 T 22-04-2016 PP4_RS19025 ea99c89f02b532bb7a23b8db8669b552 379 SUPERFAMILY SSF111369 61 153 1.57E-9 T 22-04-2016 PP4_RS19025 ea99c89f02b532bb7a23b8db8669b552 379 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 188 318 1.4E-16 T 22-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PP4_RS19025 ea99c89f02b532bb7a23b8db8669b552 379 Gene3D G3DSA:2.40.50.100 240 273 3.4E-19 T 22-04-2016 PP4_RS19025 ea99c89f02b532bb7a23b8db8669b552 379 Gene3D G3DSA:2.40.50.100 63 95 3.4E-19 T 22-04-2016 PP4_RS19025 ea99c89f02b532bb7a23b8db8669b552 379 SUPERFAMILY SSF111369 193 314 8.24E-12 T 22-04-2016 PP4_RS19025 ea99c89f02b532bb7a23b8db8669b552 379 PANTHER PTHR30386:SF0 1 371 3.1E-92 T 22-04-2016 PP4_RS04770 5a2d95a874e7a36c7c01fc954bab3733 289 Gene3D G3DSA:3.20.20.60 7 258 9.7E-61 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PP4_RS04770 5a2d95a874e7a36c7c01fc954bab3733 289 Pfam PF13714 Phosphoenolpyruvate phosphomutase 13 245 2.8E-44 T 22-04-2016 PP4_RS04770 5a2d95a874e7a36c7c01fc954bab3733 289 SUPERFAMILY SSF51621 8 264 1.17E-66 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PP4_RS04770 5a2d95a874e7a36c7c01fc954bab3733 289 PANTHER PTHR21631:SF19 10 289 1.4E-148 T 22-04-2016 PP4_RS04770 5a2d95a874e7a36c7c01fc954bab3733 289 PANTHER PTHR21631 10 289 1.4E-148 T 22-04-2016 PP4_RS04770 5a2d95a874e7a36c7c01fc954bab3733 289 Hamap MF_01299 Oxaloacetate decarboxylase. 4 289 44.926 T 22-04-2016 IPR023687 Oxaloacetate decarboxylase, bacterial GO:0008948 KEGG: 00620+4.1.1.3|MetaCyc: PWY-6339 PP4_RS01730 5ef2b1a84ef1e43ec730f73fbe95605d 256 SMART SM00893 11 189 5.5E-8 T 22-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 PP4_RS01730 5ef2b1a84ef1e43ec730f73fbe95605d 256 Pfam PF01012 Electron transfer flavoprotein domain 25 183 1.3E-17 T 22-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 PP4_RS01730 5ef2b1a84ef1e43ec730f73fbe95605d 256 PANTHER PTHR21294 26 166 6.1E-21 T 22-04-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 PP4_RS01730 5ef2b1a84ef1e43ec730f73fbe95605d 256 SUPERFAMILY SSF52402 24 249 1.19E-27 T 22-04-2016 PP4_RS01730 5ef2b1a84ef1e43ec730f73fbe95605d 256 Gene3D G3DSA:3.40.50.620 24 254 2.8E-29 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS06320 f7a5526f43ee3d7caa06b83b0102e308 149 ProDom PD003655 COPPER ELECTRON AZURIN METAL-BINDING PERIPLASMIC PRECURSOR SIGNAL SEQUENCING DIRECT MEMBRANE 27 146 2.0E-43 T 22-04-2016 PP4_RS06320 f7a5526f43ee3d7caa06b83b0102e308 149 PANTHER PTHR38439:SF2 1 149 1.4E-42 T 22-04-2016 PP4_RS06320 f7a5526f43ee3d7caa06b83b0102e308 149 TIGRFAM TIGR02695 azurin: azurin 23 147 1.3E-55 T 22-04-2016 IPR014068 Azurin, proteobacteria PP4_RS06320 f7a5526f43ee3d7caa06b83b0102e308 149 Gene3D G3DSA:2.60.40.420 22 147 5.9E-51 T 22-04-2016 IPR008972 Cupredoxin PP4_RS06320 f7a5526f43ee3d7caa06b83b0102e308 149 PANTHER PTHR38439 1 149 1.4E-42 T 22-04-2016 PP4_RS06320 f7a5526f43ee3d7caa06b83b0102e308 149 SUPERFAMILY SSF49503 22 147 1.87E-42 T 22-04-2016 IPR008972 Cupredoxin PP4_RS06320 f7a5526f43ee3d7caa06b83b0102e308 149 Pfam PF00127 Copper binding proteins, plastocyanin/azurin family 22 147 7.1E-26 T 22-04-2016 IPR000923 Blue (type 1) copper domain GO:0005507|GO:0009055 PP4_RS06320 f7a5526f43ee3d7caa06b83b0102e308 149 ProSitePatterns PS00196 Type-1 copper (blue) proteins signature. 125 141 - T 22-04-2016 IPR028871 Blue (type 1) copper protein, binding site PP4_RS22650 58f46efaf4f560940b7cc055606341f5 242 Hamap MF_00468 Sulfate transporter CysZ [cysZ]. 5 242 26.075 T 22-04-2016 IPR022985 Sulfate transporter CysZ GO:0000103|GO:0005887|GO:0015116 PP4_RS22650 58f46efaf4f560940b7cc055606341f5 242 PANTHER PTHR37468 1 242 1.1E-84 T 22-04-2016 PP4_RS22650 58f46efaf4f560940b7cc055606341f5 242 Pfam PF07264 Etoposide-induced protein 2.4 (EI24) 11 227 1.8E-35 T 22-04-2016 PP4_RS10705 9a7c4b6f23da8458b61e208ac9fa91d4 323 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 272 280 - T 22-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 PP4_RS10705 9a7c4b6f23da8458b61e208ac9fa91d4 323 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 243 314 2.8E-10 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS10705 9a7c4b6f23da8458b61e208ac9fa91d4 323 PANTHER PTHR22924 1 279 7.1E-56 T 22-04-2016 PP4_RS10705 9a7c4b6f23da8458b61e208ac9fa91d4 323 Gene3D G3DSA:2.40.30.10 5 106 1.2E-28 T 22-04-2016 PP4_RS10705 9a7c4b6f23da8458b61e208ac9fa91d4 323 SUPERFAMILY SSF52343 104 232 1.44E-24 T 22-04-2016 PP4_RS10705 9a7c4b6f23da8458b61e208ac9fa91d4 323 SUPERFAMILY SSF54292 219 323 1.84E-23 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS10705 9a7c4b6f23da8458b61e208ac9fa91d4 323 PANTHER PTHR22924:SF20 1 279 7.1E-56 T 22-04-2016 PP4_RS10705 9a7c4b6f23da8458b61e208ac9fa91d4 323 SUPERFAMILY SSF63380 5 106 1.3E-22 T 22-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 PP4_RS10705 9a7c4b6f23da8458b61e208ac9fa91d4 323 Gene3D G3DSA:3.10.20.30 224 321 1.2E-23 T 22-04-2016 IPR012675 Beta-grasp domain PP4_RS10705 9a7c4b6f23da8458b61e208ac9fa91d4 323 Pfam PF00970 Oxidoreductase FAD-binding domain 10 105 7.9E-6 T 22-04-2016 IPR008333 Oxidoreductase, FAD-binding domain PP4_RS10705 9a7c4b6f23da8458b61e208ac9fa91d4 323 Gene3D G3DSA:3.40.50.80 110 223 2.0E-24 T 22-04-2016 PP4_RS10705 9a7c4b6f23da8458b61e208ac9fa91d4 323 PRINTS PR00409 Phthalate dioxygenase reductase family signature 32 42 1.3E-23 T 22-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 PP4_RS10705 9a7c4b6f23da8458b61e208ac9fa91d4 323 PRINTS PR00409 Phthalate dioxygenase reductase family signature 195 203 1.3E-23 T 22-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 PP4_RS10705 9a7c4b6f23da8458b61e208ac9fa91d4 323 PRINTS PR00409 Phthalate dioxygenase reductase family signature 118 137 1.3E-23 T 22-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 PP4_RS10705 9a7c4b6f23da8458b61e208ac9fa91d4 323 PRINTS PR00409 Phthalate dioxygenase reductase family signature 143 152 1.3E-23 T 22-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 PP4_RS10705 9a7c4b6f23da8458b61e208ac9fa91d4 323 PRINTS PR00409 Phthalate dioxygenase reductase family signature 96 110 1.3E-23 T 22-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 PP4_RS08740 44e195b80a1b3f5c7abbf4bc6785b13d 455 SUPERFAMILY SSF51971 139 381 2.12E-52 T 22-04-2016 PP4_RS08740 44e195b80a1b3f5c7abbf4bc6785b13d 455 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 20 127 3.2E-32 T 22-04-2016 IPR028261 Dihydroprymidine dehydrogenase domain II PP4_RS08740 44e195b80a1b3f5c7abbf4bc6785b13d 455 Gene3D G3DSA:1.10.1060.10 6 143 9.7E-34 T 22-04-2016 PP4_RS08740 44e195b80a1b3f5c7abbf4bc6785b13d 455 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 141 437 2.5E-35 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS08740 44e195b80a1b3f5c7abbf4bc6785b13d 455 Gene3D G3DSA:3.40.50.720 385 450 4.3E-27 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS08740 44e195b80a1b3f5c7abbf4bc6785b13d 455 Gene3D G3DSA:3.40.50.720 144 231 4.3E-27 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS08740 44e195b80a1b3f5c7abbf4bc6785b13d 455 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 272 296 7.9E-10 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PP4_RS08740 44e195b80a1b3f5c7abbf4bc6785b13d 455 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 142 164 7.9E-10 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PP4_RS08740 44e195b80a1b3f5c7abbf4bc6785b13d 455 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 411 429 7.9E-10 T 22-04-2016 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 PP4_RS08740 44e195b80a1b3f5c7abbf4bc6785b13d 455 Gene3D G3DSA:3.50.50.60 232 381 1.6E-32 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS08740 44e195b80a1b3f5c7abbf4bc6785b13d 455 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 401 423 2.2E-18 T 22-04-2016 PP4_RS08740 44e195b80a1b3f5c7abbf4bc6785b13d 455 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 372 388 2.2E-18 T 22-04-2016 PP4_RS08740 44e195b80a1b3f5c7abbf4bc6785b13d 455 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 276 294 2.2E-18 T 22-04-2016 PP4_RS08740 44e195b80a1b3f5c7abbf4bc6785b13d 455 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 143 162 2.2E-18 T 22-04-2016 PP4_RS08740 44e195b80a1b3f5c7abbf4bc6785b13d 455 SUPERFAMILY SSF46548 7 151 2.82E-28 T 22-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 PP4_RS08740 44e195b80a1b3f5c7abbf4bc6785b13d 455 PANTHER PTHR11938:SF108 1 386 2.0E-167 T 22-04-2016 PP4_RS08740 44e195b80a1b3f5c7abbf4bc6785b13d 455 PANTHER PTHR11938 1 386 2.0E-167 T 22-04-2016 PP4_RS04135 208771943106d4e356d1b4c984a46034 392 Gene3D G3DSA:1.10.3720.10 255 387 1.7E-46 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS04135 208771943106d4e356d1b4c984a46034 392 Gene3D G3DSA:1.10.3720.10 82 150 1.7E-46 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS04135 208771943106d4e356d1b4c984a46034 392 PANTHER PTHR30085 13 171 1.3E-152 T 22-04-2016 PP4_RS04135 208771943106d4e356d1b4c984a46034 392 PANTHER PTHR30085 250 392 1.3E-152 T 22-04-2016 PP4_RS04135 208771943106d4e356d1b4c984a46034 392 PANTHER PTHR30085:SF1 13 171 1.3E-152 T 22-04-2016 PP4_RS04135 208771943106d4e356d1b4c984a46034 392 PANTHER PTHR30085:SF1 250 392 1.3E-152 T 22-04-2016 PP4_RS04135 208771943106d4e356d1b4c984a46034 392 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 83 146 3.9E-15 T 22-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PP4_RS04135 208771943106d4e356d1b4c984a46034 392 SUPERFAMILY SSF161098 83 199 1.14E-12 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS04135 208771943106d4e356d1b4c984a46034 392 SUPERFAMILY SSF161098 175 373 4.97E-26 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS04135 208771943106d4e356d1b4c984a46034 392 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 221 387 1.9E-15 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS01665 44c4e51898783b3a8d11d016d1dde2ff 649 Pfam PF13582 Metallo-peptidase family M12B Reprolysin-like 235 342 6.3E-7 T 22-04-2016 PP4_RS01665 44c4e51898783b3a8d11d016d1dde2ff 649 SUPERFAMILY SSF55486 278 360 3.8E-6 T 22-04-2016 PP4_RS09920 29396281830568d5b1b5980c755d30ef 256 Gene3D G3DSA:3.40.50.720 11 256 3.0E-49 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS09920 29396281830568d5b1b5980c755d30ef 256 SUPERFAMILY SSF51735 11 256 3.31E-49 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS09920 29396281830568d5b1b5980c755d30ef 256 PANTHER PTHR24322:SF540 169 203 5.4E-40 T 22-04-2016 PP4_RS09920 29396281830568d5b1b5980c755d30ef 256 PANTHER PTHR24322:SF540 15 149 5.4E-40 T 22-04-2016 PP4_RS09920 29396281830568d5b1b5980c755d30ef 256 PANTHER PTHR24322 169 203 5.4E-40 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS09920 29396281830568d5b1b5980c755d30ef 256 PANTHER PTHR24322 15 149 5.4E-40 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS09920 29396281830568d5b1b5980c755d30ef 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 192 209 1.3E-8 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS09920 29396281830568d5b1b5980c755d30ef 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 12 29 1.3E-8 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS09920 29396281830568d5b1b5980c755d30ef 256 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 188 1.3E-8 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS09920 29396281830568d5b1b5980c755d30ef 256 Pfam PF00106 short chain dehydrogenase 12 211 2.2E-22 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS16580 41cf08b122d7ac7c76406665af496a3e 232 SUPERFAMILY SSF51182 1 231 6.74E-72 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS16580 41cf08b122d7ac7c76406665af496a3e 232 PANTHER PTHR13903 1 231 1.0E-101 T 22-04-2016 IPR012093 Pirin PP4_RS16580 41cf08b122d7ac7c76406665af496a3e 232 PIRSF PIRSF006232 3 230 2.0E-50 T 22-04-2016 IPR012093 Pirin PP4_RS16580 41cf08b122d7ac7c76406665af496a3e 232 PANTHER PTHR13903:SF7 1 231 1.0E-101 T 22-04-2016 PP4_RS16580 41cf08b122d7ac7c76406665af496a3e 232 Gene3D G3DSA:2.60.120.10 10 231 1.1E-66 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS16580 41cf08b122d7ac7c76406665af496a3e 232 Pfam PF02678 Pirin 12 118 1.1E-35 T 22-04-2016 IPR003829 Pirin, N-terminal domain PP4_RS08820 182d6e0cecd3279e16a1d221e39f7b40 653 Gene3D G3DSA:1.10.460.10 151 211 1.5E-51 T 22-04-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 PP4_RS08820 182d6e0cecd3279e16a1d221e39f7b40 653 Gene3D G3DSA:1.10.460.10 479 602 1.5E-51 T 22-04-2016 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 PP4_RS08820 182d6e0cecd3279e16a1d221e39f7b40 653 PANTHER PTHR11390 1 500 1.8E-158 T 22-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 PP4_RS08820 182d6e0cecd3279e16a1d221e39f7b40 653 PANTHER PTHR11390 518 602 1.8E-158 T 22-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 PP4_RS08820 182d6e0cecd3279e16a1d221e39f7b40 653 SMART SM00436 122 217 9.5E-33 T 22-04-2016 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 PP4_RS08820 182d6e0cecd3279e16a1d221e39f7b40 653 SUPERFAMILY SSF56712 1 602 2.62E-184 T 22-04-2016 IPR023405 DNA topoisomerase, type IA, core domain PP4_RS08820 182d6e0cecd3279e16a1d221e39f7b40 653 SMART SM00437 271 555 1.6E-73 T 22-04-2016 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 PP4_RS08820 182d6e0cecd3279e16a1d221e39f7b40 653 TIGRFAM TIGR01056 topB: DNA topoisomerase III 1 634 5.0E-215 T 22-04-2016 IPR005738 DNA topoisomerase III GO:0003677|GO:0003916|GO:0006265 PP4_RS08820 182d6e0cecd3279e16a1d221e39f7b40 653 ProSitePatterns PS00396 Prokaryotic DNA topoisomerase I active site. 308 323 - T 22-04-2016 IPR023406 DNA topoisomerase, type IA, active site GO:0003917 PP4_RS08820 182d6e0cecd3279e16a1d221e39f7b40 653 Pfam PF01751 Toprim domain 3 129 4.3E-18 T 22-04-2016 IPR006171 Toprim domain PP4_RS08820 182d6e0cecd3279e16a1d221e39f7b40 653 Gene3D G3DSA:3.40.50.140 1 146 9.2E-50 T 22-04-2016 IPR006171 Toprim domain PP4_RS08820 182d6e0cecd3279e16a1d221e39f7b40 653 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 518 532 1.1E-26 T 22-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 PP4_RS08820 182d6e0cecd3279e16a1d221e39f7b40 653 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 96 109 1.1E-26 T 22-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 PP4_RS08820 182d6e0cecd3279e16a1d221e39f7b40 653 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 314 323 1.1E-26 T 22-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 PP4_RS08820 182d6e0cecd3279e16a1d221e39f7b40 653 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 187 205 1.1E-26 T 22-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 PP4_RS08820 182d6e0cecd3279e16a1d221e39f7b40 653 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 395 411 1.1E-26 T 22-04-2016 IPR000380 DNA topoisomerase, type IA GO:0003677|GO:0003917|GO:0006265 PP4_RS08820 182d6e0cecd3279e16a1d221e39f7b40 653 Gene3D G3DSA:2.70.20.10 212 245 4.5E-37 T 22-04-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 PP4_RS08820 182d6e0cecd3279e16a1d221e39f7b40 653 Gene3D G3DSA:2.70.20.10 361 478 4.5E-37 T 22-04-2016 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 PP4_RS08820 182d6e0cecd3279e16a1d221e39f7b40 653 Pfam PF01131 DNA topoisomerase 149 589 4.3E-120 T 22-04-2016 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 PP4_RS08820 182d6e0cecd3279e16a1d221e39f7b40 653 SMART SM00493 1 122 2.9E-27 T 22-04-2016 IPR006171 Toprim domain PP4_RS02065 c1cc4c0df789a01e16a1a87e8c8139d4 91 TIGRFAM TIGR03859 PQQ_PqqD: coenzyme PQQ biosynthesis protein PqqD 9 88 1.2E-36 T 22-04-2016 IPR022479 Coenzyme PQQ synthesis D, bacteria GO:0018189|GO:0048038 UniPathway: UPA00539 PP4_RS02065 c1cc4c0df789a01e16a1a87e8c8139d4 91 Pfam PF05402 Coenzyme PQQ synthesis protein D (PqqD) 25 88 2.0E-15 T 22-04-2016 IPR008792 Coenzyme PQQ synthesis D UniPathway: UPA00539 PP4_RS02065 c1cc4c0df789a01e16a1a87e8c8139d4 91 Hamap MF_00655 Coenzyme PQQ synthesis protein D [pqqD]. 3 90 25.886 T 22-04-2016 IPR022479 Coenzyme PQQ synthesis D, bacteria GO:0018189|GO:0048038 UniPathway: UPA00539 PP4_RS07660 a473cece3a34682dc1b6d21659966ad6 64 Gene3D G3DSA:1.10.3840.10 10 56 4.1E-5 T 22-04-2016 IPR001388 Synaptobrevin GO:0016021|GO:0016192 PP4_RS21950 1b7251b5322595f2abce626d7a78e60c 284 SUPERFAMILY SSF52540 1 154 7.07E-14 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS21950 1b7251b5322595f2abce626d7a78e60c 284 Gene3D G3DSA:3.40.50.300 1 154 2.2E-15 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS21950 1b7251b5322595f2abce626d7a78e60c 284 PIRSF PIRSF005052 1 284 2.3E-113 T 22-04-2016 IPR005337 RapZ-like family GO:0005524 PP4_RS21950 1b7251b5322595f2abce626d7a78e60c 284 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 1 284 39.355 T 22-04-2016 IPR005337 RapZ-like family GO:0005524 PP4_RS21950 1b7251b5322595f2abce626d7a78e60c 284 PANTHER PTHR30448 1 284 7.1E-133 T 22-04-2016 PP4_RS21950 1b7251b5322595f2abce626d7a78e60c 284 Pfam PF03668 P-loop ATPase protein family 1 284 2.4E-93 T 22-04-2016 IPR005337 RapZ-like family GO:0005524 PP4_RS21950 1b7251b5322595f2abce626d7a78e60c 284 PANTHER PTHR30448:SF0 1 284 7.1E-133 T 22-04-2016 PP4_RS19505 f5076837c1a5df3b00b805f71850960e 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 141 169 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PP4_RS19505 f5076837c1a5df3b00b805f71850960e 246 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 185 1.5E-5 T 22-04-2016 PP4_RS19505 f5076837c1a5df3b00b805f71850960e 246 Gene3D G3DSA:3.40.50.720 1 245 4.8E-86 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS19505 f5076837c1a5df3b00b805f71850960e 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 1.5E-11 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19505 f5076837c1a5df3b00b805f71850960e 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 1.5E-11 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19505 f5076837c1a5df3b00b805f71850960e 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 1.5E-11 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19505 f5076837c1a5df3b00b805f71850960e 246 PANTHER PTHR24322:SF635 10 138 5.0E-70 T 22-04-2016 PP4_RS19505 f5076837c1a5df3b00b805f71850960e 246 PANTHER PTHR24322:SF635 154 186 5.0E-70 T 22-04-2016 PP4_RS19505 f5076837c1a5df3b00b805f71850960e 246 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 244 7.8E-64 T 22-04-2016 PP4_RS19505 f5076837c1a5df3b00b805f71850960e 246 PANTHER PTHR24322 10 138 5.0E-70 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19505 f5076837c1a5df3b00b805f71850960e 246 PANTHER PTHR24322 154 186 5.0E-70 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19505 f5076837c1a5df3b00b805f71850960e 246 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 8 245 8.7E-99 T 22-04-2016 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00040+1.1.1.10|KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5515|MetaCyc: PWY-5525|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 PP4_RS19505 f5076837c1a5df3b00b805f71850960e 246 SUPERFAMILY SSF51735 4 246 9.55E-83 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS19505 f5076837c1a5df3b00b805f71850960e 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 1.2E-45 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19505 f5076837c1a5df3b00b805f71850960e 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 1.2E-45 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19505 f5076837c1a5df3b00b805f71850960e 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 1.2E-45 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19505 f5076837c1a5df3b00b805f71850960e 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 1.2E-45 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19505 f5076837c1a5df3b00b805f71850960e 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 1.2E-45 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19505 f5076837c1a5df3b00b805f71850960e 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 208 228 1.2E-45 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS23390 17a7b18ad5087864630b4e8d4eca9cc8 163 Pfam PF12019 Type II transport protein GspH 41 146 7.4E-14 T 22-04-2016 IPR022346 General secretion pathway, GspH GO:0008565|GO:0015627|GO:0015628 PP4_RS23390 17a7b18ad5087864630b4e8d4eca9cc8 163 SUPERFAMILY SSF54523 7 89 7.85E-10 T 22-04-2016 PP4_RS27270 c3d14db2ba699171249f66b701608ff9 284 PANTHER PTHR41542 1 283 2.0E-79 T 22-04-2016 PP4_RS27270 c3d14db2ba699171249f66b701608ff9 284 SUPERFAMILY SSF54427 141 282 5.7E-8 T 22-04-2016 IPR032710 NTF2-like domain PP4_RS27270 c3d14db2ba699171249f66b701608ff9 284 Pfam PF04280 Tim44-like domain 160 280 1.0E-7 T 22-04-2016 IPR007379 Tim44-like domain PP4_RS27270 c3d14db2ba699171249f66b701608ff9 284 SMART SM00978 151 282 6.2E-25 T 22-04-2016 IPR007379 Tim44-like domain PP4_RS27270 c3d14db2ba699171249f66b701608ff9 284 PANTHER PTHR41542:SF1 1 283 2.0E-79 T 22-04-2016 PP4_RS25890 495f609af266815bdf7e57de3945cdd6 414 PANTHER PTHR23501:SF11 17 413 3.7E-192 T 22-04-2016 PP4_RS25890 495f609af266815bdf7e57de3945cdd6 414 PANTHER PTHR23501 17 413 3.7E-192 T 22-04-2016 PP4_RS25890 495f609af266815bdf7e57de3945cdd6 414 ProSitePatterns PS00216 Sugar transport proteins signature 1. 86 102 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PP4_RS25890 495f609af266815bdf7e57de3945cdd6 414 Pfam PF07690 Major Facilitator Superfamily 36 284 4.8E-32 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS25890 495f609af266815bdf7e57de3945cdd6 414 SUPERFAMILY SSF103473 18 409 8.11E-69 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS25890 495f609af266815bdf7e57de3945cdd6 414 ProSitePatterns PS00216 Sugar transport proteins signature 1. 289 305 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PP4_RS25890 495f609af266815bdf7e57de3945cdd6 414 Gene3D G3DSA:1.20.1250.20 31 210 1.9E-36 T 22-04-2016 PP4_RS25890 495f609af266815bdf7e57de3945cdd6 414 Gene3D G3DSA:1.20.1250.20 237 411 5.5E-17 T 22-04-2016 PP4_RS23345 7da91414a7b5b2133aa4df83d0a35b64 246 Gene3D G3DSA:3.60.140.10 6 245 8.4E-96 T 22-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase PP4_RS23345 7da91414a7b5b2133aa4df83d0a35b64 246 PANTHER PTHR30616 6 245 6.9E-122 T 22-04-2016 PP4_RS23345 7da91414a7b5b2133aa4df83d0a35b64 246 PANTHER PTHR30616:SF3 6 245 6.9E-122 T 22-04-2016 PP4_RS23345 7da91414a7b5b2133aa4df83d0a35b64 246 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 24 242 6.0E-72 T 22-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase PP4_RS23345 7da91414a7b5b2133aa4df83d0a35b64 246 SUPERFAMILY SSF64438 8 244 6.59E-84 T 22-04-2016 IPR011324 Cytotoxic necrotizing factor-like, catalytic PP4_RS23345 7da91414a7b5b2133aa4df83d0a35b64 246 TIGRFAM TIGR00726 TIGR00726: YfiH family protein 29 243 2.2E-59 T 22-04-2016 IPR003730 Multi-copper polyphenol oxidoreductase, laccase PP4_RS16240 0e0ec2780faddc9115f838362b6c4b41 618 Gene3D G3DSA:1.20.1560.10 28 334 6.2E-37 T 22-04-2016 PP4_RS16240 0e0ec2780faddc9115f838362b6c4b41 618 ProSitePatterns PS00211 ABC transporters family signature. 504 518 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS16240 0e0ec2780faddc9115f838362b6c4b41 618 Pfam PF00005 ABC transporter 378 532 2.4E-36 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS16240 0e0ec2780faddc9115f838362b6c4b41 618 Pfam PF00664 ABC transporter transmembrane region 39 308 5.2E-18 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PP4_RS16240 0e0ec2780faddc9115f838362b6c4b41 618 PANTHER PTHR24221:SF203 3 611 0.0 T 22-04-2016 PP4_RS16240 0e0ec2780faddc9115f838362b6c4b41 618 SUPERFAMILY SSF52540 353 602 7.37E-91 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS16240 0e0ec2780faddc9115f838362b6c4b41 618 PANTHER PTHR24221 3 611 0.0 T 22-04-2016 PP4_RS16240 0e0ec2780faddc9115f838362b6c4b41 618 SUPERFAMILY SSF90123 20 341 7.59E-49 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PP4_RS16240 0e0ec2780faddc9115f838362b6c4b41 618 Gene3D G3DSA:3.40.50.300 361 597 5.0E-83 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS16240 0e0ec2780faddc9115f838362b6c4b41 618 SMART SM00382 387 578 2.7E-21 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS18515 2f70a2a7458182879ebecdbf9d943749 96 Gene3D G3DSA:3.30.70.900 2 93 3.0E-20 T 22-04-2016 PP4_RS18515 2f70a2a7458182879ebecdbf9d943749 96 SUPERFAMILY SSF54909 2 93 4.02E-17 T 22-04-2016 IPR011008 Dimeric alpha-beta barrel PP4_RS18515 2f70a2a7458182879ebecdbf9d943749 96 Pfam PF07045 Domain of unknown function (DUF1330) 2 93 1.4E-17 T 22-04-2016 IPR010753 Domain of unknown function DUF1330 PP4_RS20790 062880bd519e60c682f5aada53f88a58 137 Pfam PF09842 Predicted membrane protein (DUF2069) 24 125 8.0E-31 T 22-04-2016 IPR018643 Protein of unknown function DUF2069, membrane PP4_RS02505 ad09d0407fcb5b6b5dc3f94c2e79fe79 211 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 2 207 39.946 T 22-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02505 ad09d0407fcb5b6b5dc3f94c2e79fe79 211 SUPERFAMILY SSF50447 1 208 2.47E-81 T 22-04-2016 IPR009000 Translation protein, beta-barrel domain PP4_RS02505 ad09d0407fcb5b6b5dc3f94c2e79fe79 211 Pfam PF00297 Ribosomal protein L3 49 182 1.3E-15 T 22-04-2016 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02505 ad09d0407fcb5b6b5dc3f94c2e79fe79 211 Gene3D G3DSA:4.10.960.10 78 157 3.8E-33 T 22-04-2016 PP4_RS02505 ad09d0407fcb5b6b5dc3f94c2e79fe79 211 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 4 204 2.8E-91 T 22-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02505 ad09d0407fcb5b6b5dc3f94c2e79fe79 211 PANTHER PTHR11229 1 208 1.8E-118 T 22-04-2016 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02505 ad09d0407fcb5b6b5dc3f94c2e79fe79 211 Gene3D G3DSA:2.40.30.10 4 33 2.2E-9 T 22-04-2016 PP4_RS02505 ad09d0407fcb5b6b5dc3f94c2e79fe79 211 Gene3D G3DSA:2.40.30.10 158 208 2.2E-9 T 22-04-2016 PP4_RS02505 ad09d0407fcb5b6b5dc3f94c2e79fe79 211 ProSitePatterns PS00474 Ribosomal protein L3 signature. 101 124 - T 22-04-2016 IPR019926 Ribosomal protein L3, conserved site PP4_RS22060 e82443c38da03189994cd6e2d551ab80 452 PANTHER PTHR11785 2 452 1.3E-272 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS22060 e82443c38da03189994cd6e2d551ab80 452 PANTHER PTHR11785:SF26 2 452 1.3E-272 T 22-04-2016 PP4_RS22060 e82443c38da03189994cd6e2d551ab80 452 ProSitePatterns PS00218 Amino acid permeases signature. 42 72 - T 22-04-2016 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 PP4_RS22060 e82443c38da03189994cd6e2d551ab80 452 PIRSF PIRSF006060 1 451 4.4E-71 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS22060 e82443c38da03189994cd6e2d551ab80 452 Pfam PF00324 Amino acid permease 17 448 7.4E-117 T 22-04-2016 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 PP4_RS20355 3f0ab0f942c257a8cc1dbad3572b0b3e 382 SUPERFAMILY SSF52151 4 287 6.02E-49 T 22-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 PP4_RS20355 3f0ab0f942c257a8cc1dbad3572b0b3e 382 PANTHER PTHR14226 4 161 1.8E-98 T 22-04-2016 PP4_RS20355 3f0ab0f942c257a8cc1dbad3572b0b3e 382 PANTHER PTHR14226 179 334 1.8E-98 T 22-04-2016 PP4_RS20355 3f0ab0f942c257a8cc1dbad3572b0b3e 382 Gene3D G3DSA:3.40.1090.10 6 221 3.1E-14 T 22-04-2016 PP4_RS20355 3f0ab0f942c257a8cc1dbad3572b0b3e 382 Pfam PF01734 Patatin-like phospholipase 9 221 1.9E-21 T 22-04-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 PP4_RS20355 3f0ab0f942c257a8cc1dbad3572b0b3e 382 PANTHER PTHR14226:SF34 4 161 1.8E-98 T 22-04-2016 PP4_RS20355 3f0ab0f942c257a8cc1dbad3572b0b3e 382 PANTHER PTHR14226:SF34 179 334 1.8E-98 T 22-04-2016 PP4_RS08745 d41256a351d563b21ed5d086547d434e 479 SUPERFAMILY SSF51556 54 383 7.69E-110 T 22-04-2016 IPR032466 Metal-dependent hydrolase PP4_RS08745 d41256a351d563b21ed5d086547d434e 479 Gene3D G3DSA:3.20.20.140 68 376 4.6E-123 T 22-04-2016 PP4_RS08745 d41256a351d563b21ed5d086547d434e 479 PANTHER PTHR11647 1 479 0.0 T 22-04-2016 PP4_RS08745 d41256a351d563b21ed5d086547d434e 479 Pfam PF01979 Amidohydrolase family 50 436 1.3E-28 T 22-04-2016 IPR006680 Amidohydrolase-related GO:0016787 PP4_RS08745 d41256a351d563b21ed5d086547d434e 479 PANTHER PTHR11647:SF69 1 479 0.0 T 22-04-2016 PP4_RS08745 d41256a351d563b21ed5d086547d434e 479 Gene3D G3DSA:2.30.40.10 377 460 9.7E-17 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PP4_RS08745 d41256a351d563b21ed5d086547d434e 479 TIGRFAM TIGR02033 D-hydantoinase: dihydropyrimidinase 3 455 7.8E-179 T 22-04-2016 IPR011778 Hydantoinase/dihydropyrimidinase GO:0005737 Reactome: REACT_18266 PP4_RS08745 d41256a351d563b21ed5d086547d434e 479 SUPERFAMILY SSF51338 342 459 1.86E-40 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PP4_RS08745 d41256a351d563b21ed5d086547d434e 479 SUPERFAMILY SSF51338 1 66 1.46E-16 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PP4_RS08745 d41256a351d563b21ed5d086547d434e 479 Gene3D G3DSA:2.30.40.10 3 67 2.8E-31 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PP4_RS19175 70a4acc732a91b7d9dd16843968f726a 791 Gene3D G3DSA:1.20.1640.10 200 402 4.1E-26 T 22-04-2016 PP4_RS19175 70a4acc732a91b7d9dd16843968f726a 791 Gene3D G3DSA:1.20.1640.10 579 779 4.8E-30 T 22-04-2016 PP4_RS19175 70a4acc732a91b7d9dd16843968f726a 791 Pfam PF03176 MMPL family 476 773 1.3E-29 T 22-04-2016 IPR004869 Membrane transport protein, MMPL domain GO:0016020 PP4_RS19175 70a4acc732a91b7d9dd16843968f726a 791 PANTHER PTHR33406 1 102 8.2E-150 T 22-04-2016 PP4_RS19175 70a4acc732a91b7d9dd16843968f726a 791 PANTHER PTHR33406 137 774 8.2E-150 T 22-04-2016 PP4_RS19175 70a4acc732a91b7d9dd16843968f726a 791 PANTHER PTHR33406:SF2 1 102 8.2E-150 T 22-04-2016 PP4_RS19175 70a4acc732a91b7d9dd16843968f726a 791 PANTHER PTHR33406:SF2 137 774 8.2E-150 T 22-04-2016 PP4_RS19175 70a4acc732a91b7d9dd16843968f726a 791 SUPERFAMILY SSF82866 576 777 3.14E-35 T 22-04-2016 PP4_RS19175 70a4acc732a91b7d9dd16843968f726a 791 SUPERFAMILY SSF82866 197 392 1.57E-26 T 22-04-2016 PP4_RS07585 e02ed799cf4ff5bc6e1d3e34913b99a1 232 PANTHER PTHR19139:SF103 11 232 3.8E-73 T 22-04-2016 PP4_RS07585 e02ed799cf4ff5bc6e1d3e34913b99a1 232 Pfam PF00230 Major intrinsic protein 4 225 5.4E-50 T 22-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PP4_RS07585 e02ed799cf4ff5bc6e1d3e34913b99a1 232 PANTHER PTHR19139 11 232 3.8E-73 T 22-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PP4_RS07585 e02ed799cf4ff5bc6e1d3e34913b99a1 232 Gene3D G3DSA:1.20.1080.10 4 229 3.9E-69 T 22-04-2016 IPR023271 Aquaporin-like PP4_RS07585 e02ed799cf4ff5bc6e1d3e34913b99a1 232 PRINTS PR00783 Major intrinsic protein family signature 83 102 5.7E-52 T 22-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PP4_RS07585 e02ed799cf4ff5bc6e1d3e34913b99a1 232 PRINTS PR00783 Major intrinsic protein family signature 46 70 5.7E-52 T 22-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PP4_RS07585 e02ed799cf4ff5bc6e1d3e34913b99a1 232 PRINTS PR00783 Major intrinsic protein family signature 139 157 5.7E-52 T 22-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PP4_RS07585 e02ed799cf4ff5bc6e1d3e34913b99a1 232 PRINTS PR00783 Major intrinsic protein family signature 7 26 5.7E-52 T 22-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PP4_RS07585 e02ed799cf4ff5bc6e1d3e34913b99a1 232 PRINTS PR00783 Major intrinsic protein family signature 208 228 5.7E-52 T 22-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PP4_RS07585 e02ed799cf4ff5bc6e1d3e34913b99a1 232 PRINTS PR00783 Major intrinsic protein family signature 169 191 5.7E-52 T 22-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PP4_RS07585 e02ed799cf4ff5bc6e1d3e34913b99a1 232 SUPERFAMILY SSF81338 8 228 3.92E-66 T 22-04-2016 IPR023271 Aquaporin-like PP4_RS07585 e02ed799cf4ff5bc6e1d3e34913b99a1 232 ProSitePatterns PS00221 MIP family signature. 64 72 - T 22-04-2016 IPR022357 Major intrinsic protein, conserved site GO:0005215|GO:0006810|GO:0016020 PP4_RS07585 e02ed799cf4ff5bc6e1d3e34913b99a1 232 Hamap MF_01146 Aquaporin Z [aqpZ]. 6 232 34.618 T 22-04-2016 IPR023743 Aquaporin Z GO:0006833|GO:0015250|GO:0016021|GO:0055085 PP4_RS07585 e02ed799cf4ff5bc6e1d3e34913b99a1 232 TIGRFAM TIGR00861 MIP: MIP family channel proteins 11 225 1.3E-60 T 22-04-2016 IPR000425 Major intrinsic protein GO:0005215|GO:0006810|GO:0016020 PP4_RS24220 9eb421c36f24bd46e34c2ea17f5d6486 507 Gene3D G3DSA:3.90.1300.10 23 496 7.2E-119 T 22-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PP4_RS24220 9eb421c36f24bd46e34c2ea17f5d6486 507 PANTHER PTHR11895 25 497 7.2E-115 T 22-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PP4_RS24220 9eb421c36f24bd46e34c2ea17f5d6486 507 ProSitePatterns PS00571 Amidases signature. 178 209 - T 22-04-2016 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PP4_RS24220 9eb421c36f24bd46e34c2ea17f5d6486 507 Pfam PF01425 Amidase 47 480 2.7E-93 T 22-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PP4_RS24220 9eb421c36f24bd46e34c2ea17f5d6486 507 SUPERFAMILY SSF75304 20 490 1.44E-114 T 22-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PP4_RS06515 cd458d70298800bd79bc4a9080d03b7c 373 PANTHER PTHR34069 1 25 2.0E-189 T 22-04-2016 PP4_RS06515 cd458d70298800bd79bc4a9080d03b7c 373 PANTHER PTHR34069 50 70 2.0E-189 T 22-04-2016 PP4_RS06515 cd458d70298800bd79bc4a9080d03b7c 373 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 282 371 2.4E-25 T 22-04-2016 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 PP4_RS06515 cd458d70298800bd79bc4a9080d03b7c 373 PANTHER PTHR34069:SF1 1 25 2.0E-189 T 22-04-2016 PP4_RS06515 cd458d70298800bd79bc4a9080d03b7c 373 PANTHER PTHR34069:SF1 50 70 2.0E-189 T 22-04-2016 PP4_RS06515 cd458d70298800bd79bc4a9080d03b7c 373 Gene3D G3DSA:3.40.47.10 2 205 2.7E-49 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS06515 cd458d70298800bd79bc4a9080d03b7c 373 Gene3D G3DSA:3.40.47.10 206 371 4.8E-32 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS06515 cd458d70298800bd79bc4a9080d03b7c 373 SUPERFAMILY SSF53901 3 372 1.04E-54 T 22-04-2016 IPR016039 Thiolase-like GO:0003824|GO:0008152 PP4_RS06515 cd458d70298800bd79bc4a9080d03b7c 373 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 150 217 1.7E-18 T 22-04-2016 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381|UniPathway: UPA00094 PP4_RS06515 cd458d70298800bd79bc4a9080d03b7c 373 PANTHER PTHR34069:SF1 91 371 2.0E-189 T 22-04-2016 PP4_RS06515 cd458d70298800bd79bc4a9080d03b7c 373 PANTHER PTHR34069 91 371 2.0E-189 T 22-04-2016 PP4_RS06515 cd458d70298800bd79bc4a9080d03b7c 373 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 147 163 - T 22-04-2016 IPR018201 Beta-ketoacyl synthase, active site PP4_RS10960 0ea8cfb5c64d1ec3a2e8f4d9bfd2b2a4 457 Gene3D G3DSA:3.20.20.30 18 318 1.4E-111 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS10960 0ea8cfb5c64d1ec3a2e8f4d9bfd2b2a4 457 Gene3D G3DSA:3.20.20.30 356 438 1.4E-111 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS10960 0ea8cfb5c64d1ec3a2e8f4d9bfd2b2a4 457 PIRSF PIRSF000337 10 449 4.6E-121 T 22-04-2016 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 PP4_RS10960 0ea8cfb5c64d1ec3a2e8f4d9bfd2b2a4 457 PANTHER PTHR30011 23 456 2.6E-157 T 22-04-2016 PP4_RS10960 0ea8cfb5c64d1ec3a2e8f4d9bfd2b2a4 457 SUPERFAMILY SSF51679 18 439 3.53E-106 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS10960 0ea8cfb5c64d1ec3a2e8f4d9bfd2b2a4 457 PANTHER PTHR30011:SF16 23 456 2.6E-157 T 22-04-2016 PP4_RS10960 0ea8cfb5c64d1ec3a2e8f4d9bfd2b2a4 457 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 18 435 5.2E-143 T 22-04-2016 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 PP4_RS10960 0ea8cfb5c64d1ec3a2e8f4d9bfd2b2a4 457 Pfam PF00296 Luciferase-like monooxygenase 25 390 7.2E-52 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS11770 61c72cc51adb54d40d93914c96a4bea8 459 Pfam PF11737 Protein of unknown function (DUF3300) 47 285 7.8E-90 T 22-04-2016 IPR021728 Protein of unknown function DUF3300 PP4_RS11770 61c72cc51adb54d40d93914c96a4bea8 459 PANTHER PTHR40269:SF1 5 459 2.3E-78 T 22-04-2016 PP4_RS11770 61c72cc51adb54d40d93914c96a4bea8 459 PANTHER PTHR40269 5 459 2.3E-78 T 22-04-2016 PP4_RS27115 0b6cd3a790c993c9ec0fb24a5c9330ba 446 Pfam PF00571 CBS domain 303 353 2.0E-6 T 22-04-2016 IPR000644 CBS domain PP4_RS27115 0b6cd3a790c993c9ec0fb24a5c9330ba 446 Pfam PF00571 CBS domain 237 288 1.5E-6 T 22-04-2016 IPR000644 CBS domain PP4_RS27115 0b6cd3a790c993c9ec0fb24a5c9330ba 446 Pfam PF01595 Domain of unknown function DUF21 21 208 8.6E-50 T 22-04-2016 IPR002550 Domain of unknown function DUF21 PP4_RS27115 0b6cd3a790c993c9ec0fb24a5c9330ba 446 Pfam PF03471 Transporter associated domain 372 444 2.6E-17 T 22-04-2016 IPR005170 Transporter-associated domain PP4_RS27115 0b6cd3a790c993c9ec0fb24a5c9330ba 446 Gene3D G3DSA:3.30.465.10 361 445 2.1E-18 T 22-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 PP4_RS27115 0b6cd3a790c993c9ec0fb24a5c9330ba 446 SMART SM00116 239 288 3.4E-4 T 22-04-2016 IPR000644 CBS domain PP4_RS27115 0b6cd3a790c993c9ec0fb24a5c9330ba 446 SMART SM00116 305 353 0.21 T 22-04-2016 IPR000644 CBS domain PP4_RS27115 0b6cd3a790c993c9ec0fb24a5c9330ba 446 SUPERFAMILY SSF56176 367 445 7.63E-15 T 22-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 PP4_RS27115 0b6cd3a790c993c9ec0fb24a5c9330ba 446 Gene3D G3DSA:3.10.580.10 220 360 3.1E-20 T 22-04-2016 PP4_RS27115 0b6cd3a790c993c9ec0fb24a5c9330ba 446 PANTHER PTHR22777:SF18 6 446 5.0E-173 T 22-04-2016 PP4_RS27115 0b6cd3a790c993c9ec0fb24a5c9330ba 446 SMART SM01091 368 446 4.3E-17 T 22-04-2016 IPR005170 Transporter-associated domain PP4_RS27115 0b6cd3a790c993c9ec0fb24a5c9330ba 446 PANTHER PTHR22777 6 446 5.0E-173 T 22-04-2016 PP4_RS27115 0b6cd3a790c993c9ec0fb24a5c9330ba 446 SUPERFAMILY SSF54631 227 368 8.59E-27 T 22-04-2016 PP4_RS13925 a8c5998584556a4c4a9bc54122f1700a 283 PANTHER PTHR30537:SF3 1 275 5.2E-57 T 22-04-2016 PP4_RS13925 a8c5998584556a4c4a9bc54122f1700a 283 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 63 2.8E-14 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS13925 a8c5998584556a4c4a9bc54122f1700a 283 SUPERFAMILY SSF53850 90 280 2.35E-29 T 22-04-2016 PP4_RS13925 a8c5998584556a4c4a9bc54122f1700a 283 Gene3D G3DSA:3.40.190.10 175 236 8.2E-4 T 22-04-2016 PP4_RS13925 a8c5998584556a4c4a9bc54122f1700a 283 Pfam PF03466 LysR substrate binding domain 88 277 6.0E-24 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS13925 a8c5998584556a4c4a9bc54122f1700a 283 Gene3D G3DSA:1.10.10.10 1 80 1.6E-17 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS13925 a8c5998584556a4c4a9bc54122f1700a 283 Gene3D G3DSA:3.40.190.10 92 174 4.4E-12 T 22-04-2016 PP4_RS13925 a8c5998584556a4c4a9bc54122f1700a 283 PANTHER PTHR30537 1 275 5.2E-57 T 22-04-2016 PP4_RS13925 a8c5998584556a4c4a9bc54122f1700a 283 SUPERFAMILY SSF46785 1 111 9.09E-16 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS21035 e42fc6eb327fc00d959c90a6ac2d1fad 247 PANTHER PTHR21499:SF23 1 244 5.5E-113 T 22-04-2016 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 PP4_RS21035 e42fc6eb327fc00d959c90a6ac2d1fad 247 PANTHER PTHR21499 1 244 5.5E-113 T 22-04-2016 PP4_RS21035 e42fc6eb327fc00d959c90a6ac2d1fad 247 PIRSF PIRSF005650 8 247 2.1E-90 T 22-04-2016 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 PP4_RS21035 e42fc6eb327fc00d959c90a6ac2d1fad 247 Hamap MF_01220_B Uridylate kinase [pyrH]. 10 243 43.721 T 22-04-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 PP4_RS21035 e42fc6eb327fc00d959c90a6ac2d1fad 247 SUPERFAMILY SSF53633 10 242 3.27E-73 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PP4_RS21035 e42fc6eb327fc00d959c90a6ac2d1fad 247 Gene3D G3DSA:3.40.1160.10 8 243 5.2E-86 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PP4_RS21035 e42fc6eb327fc00d959c90a6ac2d1fad 247 Pfam PF00696 Amino acid kinase family 13 222 8.2E-27 T 22-04-2016 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: REACT_13 PP4_RS21035 e42fc6eb327fc00d959c90a6ac2d1fad 247 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 12 243 1.5E-99 T 22-04-2016 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22|UniPathway: UPA00159 PP4_RS20780 9b4c398a73ba6b9a2f04016e3533e27f 117 Pfam PF03960 ArsC family 7 115 1.5E-21 T 22-04-2016 IPR006660 Arsenate reductase-like PP4_RS20780 9b4c398a73ba6b9a2f04016e3533e27f 117 TIGRFAM TIGR00014 arsC: arsenate reductase (glutaredoxin) 5 116 6.1E-47 T 22-04-2016 IPR006659 Arsenate reductase GO:0008794|GO:0055114 MetaCyc: PWY-4202|MetaCyc: PWY-4621 PP4_RS20780 9b4c398a73ba6b9a2f04016e3533e27f 117 SUPERFAMILY SSF52833 4 116 8.62E-38 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS20780 9b4c398a73ba6b9a2f04016e3533e27f 117 Gene3D G3DSA:3.40.30.10 1 117 1.1E-51 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS20780 9b4c398a73ba6b9a2f04016e3533e27f 117 PANTHER PTHR30041:SF4 1 116 2.5E-59 T 22-04-2016 PP4_RS20780 9b4c398a73ba6b9a2f04016e3533e27f 117 PANTHER PTHR30041 1 116 2.5E-59 T 22-04-2016 PP4_RS11930 9056043d65aac99a42cc8fd3c705d58e 462 Gene3D G3DSA:3.40.50.300 125 266 9.3E-9 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS11930 9056043d65aac99a42cc8fd3c705d58e 462 SUPERFAMILY SSF52540 128 293 1.0E-7 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS06420 2851f48ecb89b0b74403345a84c5a1f3 490 SUPERFAMILY SSF51126 15 338 1.16E-25 T 22-04-2016 IPR011050 Pectin lyase fold/virulence factor PP4_RS06420 2851f48ecb89b0b74403345a84c5a1f3 490 Pfam PF13229 Right handed beta helix region 130 256 2.5E-9 T 22-04-2016 PP4_RS06420 2851f48ecb89b0b74403345a84c5a1f3 490 SMART SM00710 290 311 70.0 T 22-04-2016 IPR006626 Parallel beta-helix repeat PP4_RS06420 2851f48ecb89b0b74403345a84c5a1f3 490 SMART SM00710 196 217 580.0 T 22-04-2016 IPR006626 Parallel beta-helix repeat PP4_RS06420 2851f48ecb89b0b74403345a84c5a1f3 490 SMART SM00710 247 267 3500.0 T 22-04-2016 IPR006626 Parallel beta-helix repeat PP4_RS06420 2851f48ecb89b0b74403345a84c5a1f3 490 SMART SM00710 269 289 1900.0 T 22-04-2016 IPR006626 Parallel beta-helix repeat PP4_RS06420 2851f48ecb89b0b74403345a84c5a1f3 490 SMART SM00710 315 365 8700.0 T 22-04-2016 IPR006626 Parallel beta-helix repeat PP4_RS06420 2851f48ecb89b0b74403345a84c5a1f3 490 SMART SM00710 161 184 2.8 T 22-04-2016 IPR006626 Parallel beta-helix repeat PP4_RS06420 2851f48ecb89b0b74403345a84c5a1f3 490 SMART SM00710 139 160 1700.0 T 22-04-2016 IPR006626 Parallel beta-helix repeat PP4_RS06420 2851f48ecb89b0b74403345a84c5a1f3 490 Gene3D G3DSA:2.160.20.10 16 344 4.2E-20 T 22-04-2016 IPR012334 Pectin lyase fold PP4_RS01715 ec8f2016c948ead4867babe621d44d1b 686 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 392 643 5.1E-11 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS01715 ec8f2016c948ead4867babe621d44d1b 686 SUPERFAMILY SSF51905 380 683 3.24E-32 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS01715 ec8f2016c948ead4867babe621d44d1b 686 Gene3D G3DSA:3.20.20.70 2 374 4.3E-106 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS01715 ec8f2016c948ead4867babe621d44d1b 686 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 6 342 4.0E-61 T 22-04-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 PP4_RS01715 ec8f2016c948ead4867babe621d44d1b 686 SUPERFAMILY SSF51395 4 370 8.74E-97 T 22-04-2016 PP4_RS01715 ec8f2016c948ead4867babe621d44d1b 686 Gene3D G3DSA:3.50.50.60 478 633 2.2E-31 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS01715 ec8f2016c948ead4867babe621d44d1b 686 Gene3D G3DSA:3.50.50.60 375 465 5.0E-19 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS01715 ec8f2016c948ead4867babe621d44d1b 686 PANTHER PTHR22893 1 433 1.7E-192 T 22-04-2016 PP4_RS01715 ec8f2016c948ead4867babe621d44d1b 686 PANTHER PTHR22893:SF25 1 433 1.7E-192 T 22-04-2016 PP4_RS01715 ec8f2016c948ead4867babe621d44d1b 686 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 609 623 1.17E-7 T 22-04-2016 PP4_RS01715 ec8f2016c948ead4867babe621d44d1b 686 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 660 667 1.17E-7 T 22-04-2016 PP4_RS01715 ec8f2016c948ead4867babe621d44d1b 686 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 392 414 1.17E-7 T 22-04-2016 PP4_RS01715 ec8f2016c948ead4867babe621d44d1b 686 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 608 624 2.42E-5 T 22-04-2016 PP4_RS01715 ec8f2016c948ead4867babe621d44d1b 686 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 393 412 2.42E-5 T 22-04-2016 PP4_RS14815 c49288b89658c62434be75ba88fd7d18 197 Pfam PF13699 Domain of unknown function (DUF4157) 77 156 2.1E-17 T 22-04-2016 IPR025295 Domain of unknown function DUF4157 PP4_RS09950 2af7d5db2cdb2689d9d6565331dad5da 332 PANTHER PTHR31367:SF5 1 319 1.7E-93 T 22-04-2016 PP4_RS09950 2af7d5db2cdb2689d9d6565331dad5da 332 PANTHER PTHR31367 1 319 1.7E-93 T 22-04-2016 PP4_RS09950 2af7d5db2cdb2689d9d6565331dad5da 332 Pfam PF06189 5'-nucleotidase 39 307 2.2E-106 T 22-04-2016 IPR010394 5-nucleotidase GO:0000166|GO:0000287|GO:0005737|GO:0008253|GO:0009117 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|Reactome: REACT_1698 PP4_RS06065 b82c6d38b16e1404a3b979648478c9ba 813 Gene3D G3DSA:2.40.170.20 279 813 1.2E-146 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS06065 b82c6d38b16e1404a3b979648478c9ba 813 SUPERFAMILY SSF56935 151 813 1.12E-133 T 22-04-2016 PP4_RS06065 b82c6d38b16e1404a3b979648478c9ba 813 SMART SM00965 64 115 1.6E-10 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS06065 b82c6d38b16e1404a3b979648478c9ba 813 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 161 811 5.1E-123 T 22-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 PP4_RS06065 b82c6d38b16e1404a3b979648478c9ba 813 Pfam PF07660 Secretin and TonB N terminus short domain 70 114 7.7E-8 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS06065 b82c6d38b16e1404a3b979648478c9ba 813 Pfam PF07715 TonB-dependent Receptor Plug Domain 160 265 1.6E-21 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS06065 b82c6d38b16e1404a3b979648478c9ba 813 PANTHER PTHR32552:SF17 151 813 4.3E-164 T 22-04-2016 PP4_RS06065 b82c6d38b16e1404a3b979648478c9ba 813 PANTHER PTHR32552:SF17 17 46 4.3E-164 T 22-04-2016 PP4_RS06065 b82c6d38b16e1404a3b979648478c9ba 813 Gene3D G3DSA:2.170.130.10 140 272 9.1E-37 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS06065 b82c6d38b16e1404a3b979648478c9ba 813 Pfam PF00593 TonB dependent receptor 574 810 6.0E-32 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS06065 b82c6d38b16e1404a3b979648478c9ba 813 PANTHER PTHR32552 151 813 4.3E-164 T 22-04-2016 PP4_RS06065 b82c6d38b16e1404a3b979648478c9ba 813 PANTHER PTHR32552 17 46 4.3E-164 T 22-04-2016 PP4_RS02140 a32f7374d808a7f923981e0f75c2c796 71 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 1.1E-16 T 22-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 PP4_RS02140 a32f7374d808a7f923981e0f75c2c796 71 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 1.1E-16 T 22-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 PP4_RS02140 a32f7374d808a7f923981e0f75c2c796 71 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 1.1E-16 T 22-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 PP4_RS02140 a32f7374d808a7f923981e0f75c2c796 71 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 1.1E-16 T 22-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 PP4_RS02140 a32f7374d808a7f923981e0f75c2c796 71 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 22-04-2016 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02140 a32f7374d808a7f923981e0f75c2c796 71 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 2 59 1.6E-25 T 22-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 PP4_RS02140 a32f7374d808a7f923981e0f75c2c796 71 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 21.389 T 22-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 PP4_RS02140 a32f7374d808a7f923981e0f75c2c796 71 PANTHER PTHR21109 1 63 1.0E-25 T 22-04-2016 PP4_RS02140 a32f7374d808a7f923981e0f75c2c796 71 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 15 39 6.0E-7 T 22-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 PP4_RS02140 a32f7374d808a7f923981e0f75c2c796 71 Pfam PF01165 Ribosomal protein S21 4 56 1.7E-22 T 22-04-2016 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 PP4_RS23675 bc6adde136893e4c3c4a47b38b7f71ed 152 Gene3D G3DSA:2.30.30.180 88 147 1.4E-13 T 22-04-2016 IPR028998 Ribosome maturation factor RimP, C-terminal PP4_RS23675 bc6adde136893e4c3c4a47b38b7f71ed 152 PANTHER PTHR33867:SF1 1 152 9.5E-57 T 22-04-2016 PP4_RS23675 bc6adde136893e4c3c4a47b38b7f71ed 152 SUPERFAMILY SSF74942 84 151 4.58E-18 T 22-04-2016 IPR028998 Ribosome maturation factor RimP, C-terminal PP4_RS23675 bc6adde136893e4c3c4a47b38b7f71ed 152 Gene3D G3DSA:3.30.300.70 3 80 1.2E-34 T 22-04-2016 IPR028989 Ribosome maturation factor RimP, N-terminal PP4_RS23675 bc6adde136893e4c3c4a47b38b7f71ed 152 PANTHER PTHR33867 1 152 9.5E-57 T 22-04-2016 PP4_RS23675 bc6adde136893e4c3c4a47b38b7f71ed 152 Pfam PF02576 Putative ribosome maturation factor RimP 11 147 5.5E-52 T 22-04-2016 IPR003728 Ribosome maturation factor RimP GO:0042274 PP4_RS23675 bc6adde136893e4c3c4a47b38b7f71ed 152 SUPERFAMILY SSF75420 3 83 7.19E-27 T 22-04-2016 IPR028989 Ribosome maturation factor RimP, N-terminal PP4_RS23675 bc6adde136893e4c3c4a47b38b7f71ed 152 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 6 151 25.913 T 22-04-2016 IPR003728 Ribosome maturation factor RimP GO:0042274 PP4_RS19055 4cff8ffa99f54a320ca338c78f39f2aa 82 Pfam PF05532 CsbD-like 4 55 1.1E-14 T 22-04-2016 IPR008462 CsbD-like PP4_RS19055 4cff8ffa99f54a320ca338c78f39f2aa 82 Gene3D G3DSA:1.10.1470.10 1 60 7.1E-15 T 22-04-2016 IPR008462 CsbD-like PP4_RS19055 4cff8ffa99f54a320ca338c78f39f2aa 82 SUPERFAMILY SSF69047 1 60 4.58E-13 T 22-04-2016 IPR008462 CsbD-like PP4_RS20075 2b8c75289986f0b66b1cced98a4b5a87 369 Pfam PF09314 Domain of unknown function (DUF1972) 5 173 1.5E-23 T 22-04-2016 IPR015393 Domain of unknown function DUF1972 PP4_RS20075 2b8c75289986f0b66b1cced98a4b5a87 369 SUPERFAMILY SSF53756 4 365 3.19E-41 T 22-04-2016 PP4_RS20075 2b8c75289986f0b66b1cced98a4b5a87 369 PANTHER PTHR12526 4 368 7.9E-25 T 22-04-2016 PP4_RS20075 2b8c75289986f0b66b1cced98a4b5a87 369 Pfam PF00534 Glycosyl transferases group 1 189 334 5.1E-11 T 22-04-2016 IPR001296 Glycosyl transferase, family 1 PP4_RS00610 0dfae372812f2a164dc77e8e510bad9a 534 PANTHER PTHR33121:SF16 245 521 3.5E-94 T 22-04-2016 PP4_RS00610 0dfae372812f2a164dc77e8e510bad9a 534 Gene3D G3DSA:3.20.20.450 278 525 2.5E-79 T 22-04-2016 IPR001633 EAL domain PP4_RS00610 0dfae372812f2a164dc77e8e510bad9a 534 SMART SM00052 274 518 3.0E-82 T 22-04-2016 IPR001633 EAL domain PP4_RS00610 0dfae372812f2a164dc77e8e510bad9a 534 PANTHER PTHR33121 245 521 3.5E-94 T 22-04-2016 PP4_RS00610 0dfae372812f2a164dc77e8e510bad9a 534 Pfam PF12792 CSS motif domain associated with EAL 47 245 5.8E-33 T 22-04-2016 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain PP4_RS00610 0dfae372812f2a164dc77e8e510bad9a 534 Pfam PF00563 EAL domain 280 513 4.3E-62 T 22-04-2016 IPR001633 EAL domain PP4_RS00610 0dfae372812f2a164dc77e8e510bad9a 534 SUPERFAMILY SSF141868 280 525 8.11E-74 T 22-04-2016 IPR001633 EAL domain PP4_RS10100 b1c2bd73c010c9100717478b57274185 294 Gene3D G3DSA:1.10.10.10 4 87 5.4E-26 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS10100 b1c2bd73c010c9100717478b57274185 294 SUPERFAMILY SSF53850 90 291 1.99E-52 T 22-04-2016 PP4_RS10100 b1c2bd73c010c9100717478b57274185 294 Gene3D G3DSA:3.40.190.10 92 177 2.2E-26 T 22-04-2016 PP4_RS10100 b1c2bd73c010c9100717478b57274185 294 PANTHER PTHR30537:SF5 1 291 3.1E-120 T 22-04-2016 PP4_RS10100 b1c2bd73c010c9100717478b57274185 294 Pfam PF03466 LysR substrate binding domain 88 291 5.9E-52 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS10100 b1c2bd73c010c9100717478b57274185 294 Gene3D G3DSA:3.40.190.10 178 258 1.0E-11 T 22-04-2016 PP4_RS10100 b1c2bd73c010c9100717478b57274185 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 1.3E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS10100 b1c2bd73c010c9100717478b57274185 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 1.3E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS10100 b1c2bd73c010c9100717478b57274185 294 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 1.3E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS10100 b1c2bd73c010c9100717478b57274185 294 PANTHER PTHR30537 1 291 3.1E-120 T 22-04-2016 PP4_RS10100 b1c2bd73c010c9100717478b57274185 294 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 2.9E-20 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS10100 b1c2bd73c010c9100717478b57274185 294 SUPERFAMILY SSF46785 4 111 1.78E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS04440 9b0140f0291c491325b55598b5c101d1 547 SUPERFAMILY SSF52029 184 376 1.31E-83 T 22-04-2016 IPR027409 GroEL-like apical domain PP4_RS04440 9b0140f0291c491325b55598b5c101d1 547 SUPERFAMILY SSF48592 406 521 1.91E-76 T 22-04-2016 PP4_RS04440 9b0140f0291c491325b55598b5c101d1 547 SUPERFAMILY SSF48592 7 134 1.91E-76 T 22-04-2016 PP4_RS04440 9b0140f0291c491325b55598b5c101d1 547 ProSitePatterns PS00296 Chaperonins cpn60 signature. 405 416 - T 22-04-2016 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 PP4_RS04440 9b0140f0291c491325b55598b5c101d1 547 Hamap MF_00600 60 kDa chaperonin [groL]. 2 546 41.712 T 22-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 PP4_RS04440 9b0140f0291c491325b55598b5c101d1 547 PRINTS PR00298 60kDa chaperonin signature 268 291 7.4E-75 T 22-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 PP4_RS04440 9b0140f0291c491325b55598b5c101d1 547 PRINTS PR00298 60kDa chaperonin signature 350 375 7.4E-75 T 22-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 PP4_RS04440 9b0140f0291c491325b55598b5c101d1 547 PRINTS PR00298 60kDa chaperonin signature 398 419 7.4E-75 T 22-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 PP4_RS04440 9b0140f0291c491325b55598b5c101d1 547 PRINTS PR00298 60kDa chaperonin signature 83 110 7.4E-75 T 22-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 PP4_RS04440 9b0140f0291c491325b55598b5c101d1 547 PRINTS PR00298 60kDa chaperonin signature 27 53 7.4E-75 T 22-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 PP4_RS04440 9b0140f0291c491325b55598b5c101d1 547 SUPERFAMILY SSF54849 137 203 3.2E-24 T 22-04-2016 PP4_RS04440 9b0140f0291c491325b55598b5c101d1 547 Pfam PF00118 TCP-1/cpn60 chaperonin family 23 524 7.8E-94 T 22-04-2016 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 PP4_RS04440 9b0140f0291c491325b55598b5c101d1 547 Gene3D G3DSA:1.10.560.10 3 188 4.6E-48 T 22-04-2016 IPR027413 GroEL-like equatorial domain PP4_RS04440 9b0140f0291c491325b55598b5c101d1 547 Gene3D G3DSA:1.10.560.10 368 518 7.9E-40 T 22-04-2016 IPR027413 GroEL-like equatorial domain PP4_RS04440 9b0140f0291c491325b55598b5c101d1 547 PANTHER PTHR11353 2 547 6.4E-252 T 22-04-2016 PP4_RS04440 9b0140f0291c491325b55598b5c101d1 547 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 526 6.4E-255 T 22-04-2016 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 PP4_RS04440 9b0140f0291c491325b55598b5c101d1 547 Gene3D G3DSA:3.50.7.10 189 367 5.8E-98 T 22-04-2016 IPR027409 GroEL-like apical domain PP4_RS19050 7ab84bd12e065fd277264e243662866d 151 Pfam PF00376 MerR family regulatory protein 10 46 2.7E-14 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS19050 7ab84bd12e065fd277264e243662866d 151 SUPERFAMILY SSF46955 9 131 4.03E-28 T 22-04-2016 IPR009061 Putative DNA-binding domain PP4_RS19050 7ab84bd12e065fd277264e243662866d 151 SMART SM00422 9 77 3.6E-24 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS19050 7ab84bd12e065fd277264e243662866d 151 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 10 21 2.8E-11 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS19050 7ab84bd12e065fd277264e243662866d 151 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 21 34 2.8E-11 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS19050 7ab84bd12e065fd277264e243662866d 151 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 44 64 2.8E-11 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS19050 7ab84bd12e065fd277264e243662866d 151 PANTHER PTHR30204:SF0 1 139 1.2E-65 T 22-04-2016 IPR010211 Redox-sensitive transcriptional activator SoxR GO:0003677|GO:0006355|GO:0006979|GO:0051537 PP4_RS19050 7ab84bd12e065fd277264e243662866d 151 Gene3D G3DSA:1.10.1660.10 6 62 7.5E-21 T 22-04-2016 PP4_RS19050 7ab84bd12e065fd277264e243662866d 151 TIGRFAM TIGR01950 SoxR: redox-sensitive transcriptional activator SoxR 9 148 1.2E-61 T 22-04-2016 IPR010211 Redox-sensitive transcriptional activator SoxR GO:0003677|GO:0006355|GO:0006979|GO:0051537 PP4_RS19050 7ab84bd12e065fd277264e243662866d 151 Gene3D G3DSA:1.10.1660.10 63 142 5.0E-15 T 22-04-2016 PP4_RS19050 7ab84bd12e065fd277264e243662866d 151 Pfam PF09278 MerR, DNA binding 51 116 3.9E-15 T 22-04-2016 IPR015358 Transcription regulator MerR, DNA binding PP4_RS19050 7ab84bd12e065fd277264e243662866d 151 ProSitePatterns PS00552 MerR-type HTH domain signature. 12 34 - T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS19050 7ab84bd12e065fd277264e243662866d 151 PANTHER PTHR30204 1 139 1.2E-65 T 22-04-2016 PP4_RS12635 3f314fa1a3bf9592514efabd9d549e4b 472 PANTHER PTHR41983 1 460 0.0 T 22-04-2016 PP4_RS12635 3f314fa1a3bf9592514efabd9d549e4b 472 Pfam PF02667 Short chain fatty acid transporter 12 456 3.7E-85 T 22-04-2016 IPR006160 Short chain fatty acid transporter AtoE PP4_RS12635 3f314fa1a3bf9592514efabd9d549e4b 472 PANTHER PTHR41983:SF1 1 460 0.0 T 22-04-2016 PP4_RS17275 38f0e5466317eb829218af85034e3e20 1235 Gene3D G3DSA:3.10.196.10 961 1234 9.2E-106 T 22-04-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 PP4_RS17275 38f0e5466317eb829218af85034e3e20 1235 Pfam PF02310 B12 binding domain 750 843 3.0E-19 T 22-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 PP4_RS17275 38f0e5466317eb829218af85034e3e20 1235 TIGRFAM TIGR02082 metH: methionine synthase 15 1201 0.0 T 22-04-2016 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0008898|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 PP4_RS17275 38f0e5466317eb829218af85034e3e20 1235 SUPERFAMILY SSF82282 11 402 6.15E-118 T 22-04-2016 IPR003726 Homocysteine-binding domain PP4_RS17275 38f0e5466317eb829218af85034e3e20 1235 SUPERFAMILY SSF52242 744 896 4.32E-45 T 22-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 PP4_RS17275 38f0e5466317eb829218af85034e3e20 1235 Gene3D G3DSA:1.10.1240.10 651 738 9.9E-38 T 22-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain PP4_RS17275 38f0e5466317eb829218af85034e3e20 1235 Pfam PF02965 Vitamin B12 dependent methionine synthase, activation domain 942 1217 1.4E-118 T 22-04-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 PP4_RS17275 38f0e5466317eb829218af85034e3e20 1235 Pfam PF02574 Homocysteine S-methyltransferase 20 328 4.8E-91 T 22-04-2016 IPR003726 Homocysteine-binding domain PP4_RS17275 38f0e5466317eb829218af85034e3e20 1235 Gene3D G3DSA:3.20.20.330 8 366 3.2E-129 T 22-04-2016 IPR003726 Homocysteine-binding domain PP4_RS17275 38f0e5466317eb829218af85034e3e20 1235 SMART SM01018 658 741 1.9E-42 T 22-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain PP4_RS17275 38f0e5466317eb829218af85034e3e20 1235 SUPERFAMILY SSF51717 359 632 4.19E-90 T 22-04-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 PP4_RS17275 38f0e5466317eb829218af85034e3e20 1235 PANTHER PTHR21091 1 405 9.1E-181 T 22-04-2016 PP4_RS17275 38f0e5466317eb829218af85034e3e20 1235 Gene3D G3DSA:3.20.20.20 367 639 3.8E-114 T 22-04-2016 IPR000489 Pterin-binding domain GO:0042558 PP4_RS17275 38f0e5466317eb829218af85034e3e20 1235 SUPERFAMILY SSF47644 653 740 8.5E-28 T 22-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain PP4_RS17275 38f0e5466317eb829218af85034e3e20 1235 Pfam PF02607 B12 binding domain 662 733 1.5E-24 T 22-04-2016 IPR003759 Cobalamin (vitamin B12)-binding module, cap domain PP4_RS17275 38f0e5466317eb829218af85034e3e20 1235 Gene3D G3DSA:3.40.50.280 747 897 8.6E-63 T 22-04-2016 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 PP4_RS17275 38f0e5466317eb829218af85034e3e20 1235 PANTHER PTHR21091:SF111 1 405 9.1E-181 T 22-04-2016 PP4_RS17275 38f0e5466317eb829218af85034e3e20 1235 PIRSF PIRSF000381 4 1204 0.0 T 22-04-2016 IPR011822 Cobalamin-dependent methionine synthase GO:0008270|GO:0008705|GO:0008898|GO:0009086|GO:0031419 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 PP4_RS17275 38f0e5466317eb829218af85034e3e20 1235 Pfam PF00809 Pterin binding enzyme 363 601 2.1E-58 T 22-04-2016 IPR000489 Pterin-binding domain GO:0042558 PP4_RS17275 38f0e5466317eb829218af85034e3e20 1235 SUPERFAMILY SSF56507 905 1234 2.49E-122 T 22-04-2016 IPR004223 Vitamin B12-dependent methionine synthase, activation domain GO:0005622|GO:0008705|GO:0009086 KEGG: 00270+2.1.1.13|KEGG: 00450+2.1.1.13|KEGG: 00670+2.1.1.13|MetaCyc: PWY-2201|MetaCyc: PWY-3841|UniPathway: UPA00051 PP4_RS18930 7c1c21ad604479688a7d235370640e18 331 Gene3D G3DSA:1.20.58.340 257 331 7.6E-24 T 22-04-2016 PP4_RS18930 7c1c21ad604479688a7d235370640e18 331 PANTHER PTHR21535 89 331 3.2E-32 T 22-04-2016 PP4_RS18930 7c1c21ad604479688a7d235370640e18 331 SUPERFAMILY SSF144083 266 328 7.98E-17 T 22-04-2016 PP4_RS18930 7c1c21ad604479688a7d235370640e18 331 Gene3D G3DSA:1.20.58.340 160 251 9.5E-8 T 22-04-2016 PP4_RS18930 7c1c21ad604479688a7d235370640e18 331 Pfam PF01544 CorA-like Mg2+ transporter protein 39 327 1.2E-60 T 22-04-2016 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 PP4_RS18930 7c1c21ad604479688a7d235370640e18 331 SUPERFAMILY SSF143865 8 257 1.19E-44 T 22-04-2016 PP4_RS26845 dce2511353d60d6656b66bf3143eb113 669 Gene3D G3DSA:3.40.50.300 551 640 1.7E-65 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26845 dce2511353d60d6656b66bf3143eb113 669 Gene3D G3DSA:3.40.50.300 280 383 1.7E-65 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26845 dce2511353d60d6656b66bf3143eb113 669 Pfam PF00580 UvrD/REP helicase N-terminal domain 4 265 2.3E-70 T 22-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 PP4_RS26845 dce2511353d60d6656b66bf3143eb113 669 TIGRFAM TIGR01074 rep: ATP-dependent DNA helicase Rep 3 668 0.0 T 22-04-2016 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 PP4_RS26845 dce2511353d60d6656b66bf3143eb113 669 SUPERFAMILY SSF52540 2 638 3.26E-161 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26845 dce2511353d60d6656b66bf3143eb113 669 Gene3D G3DSA:3.40.50.300 2 105 2.6E-63 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26845 dce2511353d60d6656b66bf3143eb113 669 Gene3D G3DSA:3.40.50.300 182 279 2.6E-63 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26845 dce2511353d60d6656b66bf3143eb113 669 PANTHER PTHR11070 1 648 0.0 T 22-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 PP4_RS26845 dce2511353d60d6656b66bf3143eb113 669 Pfam PF13361 UvrD-like helicase C-terminal domain 271 613 1.0E-67 T 22-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 PP4_RS26845 dce2511353d60d6656b66bf3143eb113 669 Hamap MF_01920 ATP-dependent DNA helicase Rep [rep]. 2 668 39.756 T 22-04-2016 IPR005752 ATP-dependent DNA helicase Rep GO:0003677|GO:0004003|GO:0005524|GO:0006268 PP4_RS26845 dce2511353d60d6656b66bf3143eb113 669 PANTHER PTHR11070:SF19 1 648 0.0 T 22-04-2016 PP4_RS26845 dce2511353d60d6656b66bf3143eb113 669 Gene3D G3DSA:1.10.10.160 109 181 6.0E-17 T 22-04-2016 IPR013986 DExx box DNA helicase domain PP4_RS26845 dce2511353d60d6656b66bf3143eb113 669 Gene3D G3DSA:1.10.486.10 384 523 1.3E-36 T 22-04-2016 PP4_RS02015 f95451f19b9339ebf14fc92d243be304 226 PIRSF PIRSF006755 1 225 7.6E-74 T 22-04-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380|UniPathway: UPA00078 PP4_RS02015 f95451f19b9339ebf14fc92d243be304 226 SUPERFAMILY SSF52540 1 216 7.25E-60 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS02015 f95451f19b9339ebf14fc92d243be304 226 Hamap MF_00336 ATP-dependent dethiobiotin synthetase BioD [bioD]. 2 213 28.583 T 22-04-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380|UniPathway: UPA00078 PP4_RS02015 f95451f19b9339ebf14fc92d243be304 226 PANTHER PTHR21343:SF13 1 223 5.3E-106 T 22-04-2016 PP4_RS02015 f95451f19b9339ebf14fc92d243be304 226 PANTHER PTHR21343 1 223 5.3E-106 T 22-04-2016 PP4_RS02015 f95451f19b9339ebf14fc92d243be304 226 TIGRFAM TIGR00347 bioD: dethiobiotin synthase 6 177 5.1E-46 T 22-04-2016 IPR004472 Dethiobiotin synthase BioD GO:0000287|GO:0004141|GO:0005524|GO:0009102 KEGG: 00780+6.3.3.3|MetaCyc: PWY-7380|UniPathway: UPA00078 PP4_RS02015 f95451f19b9339ebf14fc92d243be304 226 Gene3D G3DSA:3.40.50.300 3 221 1.7E-78 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS02015 f95451f19b9339ebf14fc92d243be304 226 Pfam PF13500 AAA domain 3 212 1.1E-37 T 22-04-2016 PP4_RS09350 6078dd387e80b162878d45d6008f93a0 488 ProSitePatterns PS00455 Putative AMP-binding domain signature. 145 156 - T 22-04-2016 IPR020845 AMP-binding, conserved site PP4_RS09350 6078dd387e80b162878d45d6008f93a0 488 Gene3D G3DSA:3.40.50.980 8 151 1.7E-18 T 22-04-2016 PP4_RS09350 6078dd387e80b162878d45d6008f93a0 488 PANTHER PTHR24096 8 449 1.1E-64 T 22-04-2016 PP4_RS09350 6078dd387e80b162878d45d6008f93a0 488 SUPERFAMILY SSF56801 4 483 9.81E-87 T 22-04-2016 PP4_RS09350 6078dd387e80b162878d45d6008f93a0 488 Pfam PF00501 AMP-binding enzyme 14 381 6.3E-54 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PP4_RS09350 6078dd387e80b162878d45d6008f93a0 488 Gene3D G3DSA:3.40.50.980 152 317 2.7E-26 T 22-04-2016 PP4_RS09350 6078dd387e80b162878d45d6008f93a0 488 Gene3D G3DSA:2.30.38.10 318 371 1.5E-8 T 22-04-2016 PP4_RS08945 663fb64496b6e50d8a81b59dbbc67a95 119 Pfam PF02635 DsrE/DsrF-like family 3 118 3.5E-22 T 22-04-2016 IPR003787 Sulphur relay, DsrE/F-like protein PP4_RS08945 663fb64496b6e50d8a81b59dbbc67a95 119 PANTHER PTHR38780:SF1 2 119 1.1E-48 T 22-04-2016 PP4_RS08945 663fb64496b6e50d8a81b59dbbc67a95 119 Gene3D G3DSA:3.40.1260.10 1 118 1.0E-41 T 22-04-2016 IPR027396 DsrEFH-like PP4_RS08945 663fb64496b6e50d8a81b59dbbc67a95 119 SUPERFAMILY SSF75169 3 118 2.49E-35 T 22-04-2016 IPR027396 DsrEFH-like PP4_RS08945 663fb64496b6e50d8a81b59dbbc67a95 119 PANTHER PTHR38780 2 119 1.1E-48 T 22-04-2016 PP4_RS08945 663fb64496b6e50d8a81b59dbbc67a95 119 TIGRFAM TIGR03010 sulf_tusC_dsrF: sulfur relay protein TusC/DsrF 5 118 6.8E-40 T 22-04-2016 IPR017462 Sulphur relay, TusC/DsrF PP4_RS12735 cecffba92c26c0070714b793af840d41 313 Gene3D G3DSA:1.10.10.10 12 87 7.8E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS12735 cecffba92c26c0070714b793af840d41 313 Gene3D G3DSA:3.40.190.10 88 179 6.6E-16 T 22-04-2016 PP4_RS12735 cecffba92c26c0070714b793af840d41 313 SUPERFAMILY SSF53850 93 304 3.67E-38 T 22-04-2016 PP4_RS12735 cecffba92c26c0070714b793af840d41 313 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 12 69 1.1E-18 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS12735 cecffba92c26c0070714b793af840d41 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 46 57 8.5E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS12735 cecffba92c26c0070714b793af840d41 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 25 36 8.5E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS12735 cecffba92c26c0070714b793af840d41 313 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 36 46 8.5E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS12735 cecffba92c26c0070714b793af840d41 313 Pfam PF03466 LysR substrate binding domain 92 301 9.4E-39 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS12735 cecffba92c26c0070714b793af840d41 313 PANTHER PTHR30537 1 306 7.0E-82 T 22-04-2016 PP4_RS12735 cecffba92c26c0070714b793af840d41 313 Gene3D G3DSA:3.40.190.10 180 269 1.4E-19 T 22-04-2016 PP4_RS12735 cecffba92c26c0070714b793af840d41 313 PANTHER PTHR30537:SF26 1 306 7.0E-82 T 22-04-2016 PP4_RS12735 cecffba92c26c0070714b793af840d41 313 SUPERFAMILY SSF46785 12 84 2.73E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS05505 3cf8727edbdf265e6a2d3b658b8c99f9 103 Pfam PF10052 Protein of unknown function (DUF2288) 8 96 4.9E-28 T 22-04-2016 IPR018741 Protein of unknown function DUF2288 PP4_RS08520 ec23a4c1739c497fd3baa15d358b8e34 259 PANTHER PTHR30065 1 259 2.3E-50 T 22-04-2016 PP4_RS08520 ec23a4c1739c497fd3baa15d358b8e34 259 TIGRFAM TIGR01401 fliR_like_III: type III secretion apparatus protein SpaR/YscT/HrcT 8 253 5.9E-77 T 22-04-2016 IPR006304 Type III secretion protein SpaR/YscT GO:0006810|GO:0016021 PP4_RS08520 ec23a4c1739c497fd3baa15d358b8e34 259 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 22 43 1.5E-28 T 22-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 PP4_RS08520 ec23a4c1739c497fd3baa15d358b8e34 259 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 200 219 1.5E-28 T 22-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 PP4_RS08520 ec23a4c1739c497fd3baa15d358b8e34 259 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 80 99 1.5E-28 T 22-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 PP4_RS08520 ec23a4c1739c497fd3baa15d358b8e34 259 PRINTS PR00953 Type III secretion system inner membrane R protein family signature 178 200 1.5E-28 T 22-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 PP4_RS08520 ec23a4c1739c497fd3baa15d358b8e34 259 Pfam PF01311 Bacterial export proteins, family 1 16 233 2.5E-47 T 22-04-2016 IPR002010 Type III secretion system inner membrane R protein GO:0006605|GO:0016020 PP4_RS27005 2df56e7496e51116403b3fe1ae8cf226 290 Gene3D G3DSA:3.40.190.10 95 171 3.8E-14 T 22-04-2016 PP4_RS27005 2df56e7496e51116403b3fe1ae8cf226 290 Gene3D G3DSA:3.40.190.10 172 243 4.5E-6 T 22-04-2016 PP4_RS27005 2df56e7496e51116403b3fe1ae8cf226 290 PANTHER PTHR30579:SF3 1 286 2.6E-88 T 22-04-2016 PP4_RS27005 2df56e7496e51116403b3fe1ae8cf226 290 SUPERFAMILY SSF53850 93 288 1.59E-29 T 22-04-2016 PP4_RS27005 2df56e7496e51116403b3fe1ae8cf226 290 PANTHER PTHR30579 1 286 2.6E-88 T 22-04-2016 PP4_RS27005 2df56e7496e51116403b3fe1ae8cf226 290 Gene3D G3DSA:1.10.10.10 8 88 4.1E-15 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS27005 2df56e7496e51116403b3fe1ae8cf226 290 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 66 1.4E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS27005 2df56e7496e51116403b3fe1ae8cf226 290 Pfam PF03466 LysR substrate binding domain 92 284 3.3E-29 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS27005 2df56e7496e51116403b3fe1ae8cf226 290 SUPERFAMILY SSF46785 5 115 4.9E-16 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS27180 6162244bed53e049576f5660a79a2625 360 SUPERFAMILY SSF51246 297 357 2.04E-14 T 22-04-2016 IPR011054 Rudiment single hybrid motif PP4_RS27180 6162244bed53e049576f5660a79a2625 360 SUPERFAMILY SSF56059 97 292 2.47E-56 T 22-04-2016 PP4_RS27180 6162244bed53e049576f5660a79a2625 360 Gene3D G3DSA:3.40.50.20 2 105 6.9E-28 T 22-04-2016 IPR016185 Pre-ATP-grasp domain PP4_RS27180 6162244bed53e049576f5660a79a2625 360 SUPERFAMILY SSF52440 2 94 7.63E-23 T 22-04-2016 IPR016185 Pre-ATP-grasp domain PP4_RS27180 6162244bed53e049576f5660a79a2625 360 PANTHER PTHR11609:SF8 1 354 2.0E-152 T 22-04-2016 PP4_RS27180 6162244bed53e049576f5660a79a2625 360 Gene3D G3DSA:3.30.1490.20 112 175 5.6E-22 T 22-04-2016 IPR013815 ATP-grasp fold, subdomain 1 GO:0003824|GO:0005524 PP4_RS27180 6162244bed53e049576f5660a79a2625 360 Pfam PF02222 ATP-grasp domain 106 272 3.7E-56 T 22-04-2016 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type UniPathway: UPA00074 PP4_RS27180 6162244bed53e049576f5660a79a2625 360 Gene3D G3DSA:3.30.470.20 176 357 2.3E-55 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PP4_RS27180 6162244bed53e049576f5660a79a2625 360 PANTHER PTHR11609 1 354 2.0E-152 T 22-04-2016 PP4_RS27180 6162244bed53e049576f5660a79a2625 360 TIGRFAM TIGR01161 purK: phosphoribosylaminoimidazole carboxylase, ATPase subunit 2 349 7.9E-108 T 22-04-2016 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 PP4_RS27180 6162244bed53e049576f5660a79a2625 360 Hamap MF_01928 N5-carboxyaminoimidazole ribonucleotide synthase [purK]. 2 344 39.218 T 22-04-2016 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit GO:0004638|GO:0006189 PP4_RS04150 a84985333f3ebcc2a7bd6b1abc02be9b 386 SMART SM00228 280 362 3.2E-16 T 22-04-2016 IPR001478 PDZ domain GO:0005515 PP4_RS04150 a84985333f3ebcc2a7bd6b1abc02be9b 386 Gene3D G3DSA:2.40.10.10 54 168 1.8E-35 T 22-04-2016 PP4_RS04150 a84985333f3ebcc2a7bd6b1abc02be9b 386 PANTHER PTHR22939 1 375 2.9E-167 T 22-04-2016 PP4_RS04150 a84985333f3ebcc2a7bd6b1abc02be9b 386 Pfam PF13365 Trypsin-like peptidase domain 107 241 6.8E-30 T 22-04-2016 PP4_RS04150 a84985333f3ebcc2a7bd6b1abc02be9b 386 Gene3D G3DSA:2.40.10.10 169 281 3.1E-42 T 22-04-2016 PP4_RS04150 a84985333f3ebcc2a7bd6b1abc02be9b 386 SUPERFAMILY SSF50156 238 363 9.99E-25 T 22-04-2016 IPR001478 PDZ domain GO:0005515 PP4_RS04150 a84985333f3ebcc2a7bd6b1abc02be9b 386 PRINTS PR00834 HtrA/DegQ protease family signature 116 128 4.8E-56 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 PP4_RS04150 a84985333f3ebcc2a7bd6b1abc02be9b 386 PRINTS PR00834 HtrA/DegQ protease family signature 137 157 4.8E-56 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 PP4_RS04150 a84985333f3ebcc2a7bd6b1abc02be9b 386 PRINTS PR00834 HtrA/DegQ protease family signature 212 229 4.8E-56 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 PP4_RS04150 a84985333f3ebcc2a7bd6b1abc02be9b 386 PRINTS PR00834 HtrA/DegQ protease family signature 234 251 4.8E-56 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 PP4_RS04150 a84985333f3ebcc2a7bd6b1abc02be9b 386 PRINTS PR00834 HtrA/DegQ protease family signature 320 332 4.8E-56 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 PP4_RS04150 a84985333f3ebcc2a7bd6b1abc02be9b 386 PRINTS PR00834 HtrA/DegQ protease family signature 177 201 4.8E-56 T 22-04-2016 IPR001940 Peptidase S1C GO:0004252|GO:0006508 PP4_RS04150 a84985333f3ebcc2a7bd6b1abc02be9b 386 Pfam PF13180 PDZ domain 281 367 4.3E-14 T 22-04-2016 IPR001478 PDZ domain GO:0005515 PP4_RS04150 a84985333f3ebcc2a7bd6b1abc02be9b 386 PANTHER PTHR22939:SF93 1 375 2.9E-167 T 22-04-2016 PP4_RS04150 a84985333f3ebcc2a7bd6b1abc02be9b 386 SUPERFAMILY SSF50494 51 271 7.82E-63 T 22-04-2016 IPR009003 Peptidase S1, PA clan PP4_RS04150 a84985333f3ebcc2a7bd6b1abc02be9b 386 Gene3D G3DSA:2.30.42.10 282 375 5.4E-25 T 22-04-2016 IPR001478 PDZ domain GO:0005515 PP4_RS25990 66df7b890485fe753aa1e06a40d7ab4c 208 PANTHER PTHR21666 75 196 5.7E-41 T 22-04-2016 PP4_RS25990 66df7b890485fe753aa1e06a40d7ab4c 208 SUPERFAMILY SSF54001 67 197 3.6E-45 T 22-04-2016 PP4_RS25990 66df7b890485fe753aa1e06a40d7ab4c 208 Gene3D G3DSA:3.90.1720.10 68 201 1.8E-49 T 22-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PP4_RS25990 66df7b890485fe753aa1e06a40d7ab4c 208 Pfam PF00877 NlpC/P60 family 86 193 5.7E-33 T 22-04-2016 IPR000064 Endopeptidase, NLPC/P60 domain KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PP4_RS20395 04cb23b000f0be59bcf64a0265ab0e37 237 PANTHER PTHR11751 120 143 1.7E-40 T 22-04-2016 PP4_RS20395 04cb23b000f0be59bcf64a0265ab0e37 237 PANTHER PTHR11751 12 73 1.7E-40 T 22-04-2016 PP4_RS20395 04cb23b000f0be59bcf64a0265ab0e37 237 Pfam PF07702 UTRA domain 92 230 3.5E-37 T 22-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 PP4_RS20395 04cb23b000f0be59bcf64a0265ab0e37 237 SUPERFAMILY SSF64288 59 234 8.79E-42 T 22-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain PP4_RS20395 04cb23b000f0be59bcf64a0265ab0e37 237 PANTHER PTHR11751:SF333 120 143 1.7E-40 T 22-04-2016 PP4_RS20395 04cb23b000f0be59bcf64a0265ab0e37 237 PANTHER PTHR11751:SF333 12 73 1.7E-40 T 22-04-2016 PP4_RS20395 04cb23b000f0be59bcf64a0265ab0e37 237 Gene3D G3DSA:3.40.1410.10 67 234 1.6E-40 T 22-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain PP4_RS20395 04cb23b000f0be59bcf64a0265ab0e37 237 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 45 61 1.2E-9 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS20395 04cb23b000f0be59bcf64a0265ab0e37 237 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 31 45 1.2E-9 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS20395 04cb23b000f0be59bcf64a0265ab0e37 237 SUPERFAMILY SSF46785 12 77 2.01E-17 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS20395 04cb23b000f0be59bcf64a0265ab0e37 237 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 71 4.3E-18 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS20395 04cb23b000f0be59bcf64a0265ab0e37 237 Gene3D G3DSA:1.10.10.10 9 66 6.9E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS20395 04cb23b000f0be59bcf64a0265ab0e37 237 SMART SM00345 12 71 3.6E-19 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS20395 04cb23b000f0be59bcf64a0265ab0e37 237 SMART SM00866 92 231 1.3E-31 T 22-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 PP4_RS00920 d18ee1fdce8639f3d1866d133faf619e 647 SUPERFAMILY SSF46626 128 237 1.81E-21 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS00920 d18ee1fdce8639f3d1866d133faf619e 647 PANTHER PTHR31632 379 612 2.9E-38 T 22-04-2016 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0006827|GO:0016020|GO:0033573 PP4_RS00920 d18ee1fdce8639f3d1866d133faf619e 647 PANTHER PTHR31632:SF4 379 612 2.9E-38 T 22-04-2016 PP4_RS00920 d18ee1fdce8639f3d1866d133faf619e 647 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 147 230 3.0E-13 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS00920 d18ee1fdce8639f3d1866d133faf619e 647 Pfam PF03239 Iron permease FTR1 family 360 492 4.8E-14 T 22-04-2016 IPR004923 Iron permease FTR1/Fip1/EfeU GO:0005381|GO:0006827|GO:0016020|GO:0033573 PP4_RS00920 d18ee1fdce8639f3d1866d133faf619e 647 Gene3D G3DSA:1.10.760.10 135 237 5.9E-20 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS02840 97227f0c0941e6662117ef728cf10eb5 363 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 7 198 1.4E-82 T 22-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PP4_RS02840 97227f0c0941e6662117ef728cf10eb5 363 PIRSF PIRSF001259 2 363 8.3E-117 T 22-04-2016 PP4_RS02840 97227f0c0941e6662117ef728cf10eb5 363 Pfam PF00925 GTP cyclohydrolase II 208 361 7.8E-30 T 22-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 PP4_RS02840 97227f0c0941e6662117ef728cf10eb5 363 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 3 199 1.4E-72 T 22-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PP4_RS02840 97227f0c0941e6662117ef728cf10eb5 363 SUPERFAMILY SSF55821 3 203 2.98E-85 T 22-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain PP4_RS02840 97227f0c0941e6662117ef728cf10eb5 363 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 1 203 38.357 T 22-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PP4_RS02840 97227f0c0941e6662117ef728cf10eb5 363 PANTHER PTHR21327 1 361 3.2E-147 T 22-04-2016 PP4_RS02840 97227f0c0941e6662117ef728cf10eb5 363 SUPERFAMILY SSF142695 204 361 1.01E-41 T 22-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 PP4_RS02840 97227f0c0941e6662117ef728cf10eb5 363 Gene3D G3DSA:3.90.870.10 2 211 1.4E-98 T 22-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain PP4_RS02840 97227f0c0941e6662117ef728cf10eb5 363 PANTHER PTHR21327:SF6 1 361 3.2E-147 T 22-04-2016 PP4_RS26260 36e1bd25e59b89c563c13115d77699f8 218 PANTHER PTHR10000:SF10 1 211 6.4E-68 T 22-04-2016 PP4_RS26260 36e1bd25e59b89c563c13115d77699f8 218 Gene3D G3DSA:3.40.50.1000 81 217 3.0E-55 T 22-04-2016 IPR023214 HAD-like domain PP4_RS26260 36e1bd25e59b89c563c13115d77699f8 218 SUPERFAMILY SSF56784 1 211 6.8E-39 T 22-04-2016 IPR023214 HAD-like domain PP4_RS26260 36e1bd25e59b89c563c13115d77699f8 218 Gene3D G3DSA:1.20.1440.100 15 80 5.2E-31 T 22-04-2016 PP4_RS26260 36e1bd25e59b89c563c13115d77699f8 218 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 3 201 4.5E-47 T 22-04-2016 IPR006385 HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial PP4_RS26260 36e1bd25e59b89c563c13115d77699f8 218 Pfam PF12710 haloacid dehalogenase-like hydrolase 4 188 8.8E-42 T 22-04-2016 PP4_RS26260 36e1bd25e59b89c563c13115d77699f8 218 PANTHER PTHR10000 1 211 6.4E-68 T 22-04-2016 PP4_RS26260 36e1bd25e59b89c563c13115d77699f8 218 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 3 190 2.1E-28 T 22-04-2016 IPR006383 HAD-superfamily hydrolase, subfamily IB, PSPase-like GO:0008152|GO:0016791 PP4_RS05190 ee415c8372cb6e01a6f62ad0778e3ea6 369 PANTHER PTHR24220:SF282 8 284 6.3E-128 T 22-04-2016 PP4_RS05190 ee415c8372cb6e01a6f62ad0778e3ea6 369 PANTHER PTHR24220 8 284 6.3E-128 T 22-04-2016 PP4_RS05190 ee415c8372cb6e01a6f62ad0778e3ea6 369 SUPERFAMILY SSF50331 262 345 1.7E-12 T 22-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal PP4_RS05190 ee415c8372cb6e01a6f62ad0778e3ea6 369 Pfam PF08402 TOBE domain 276 345 6.0E-10 T 22-04-2016 IPR013611 Transport-associated OB, type 2 GO:0005215|GO:0005524|GO:0006810|GO:0016820|GO:0043190 PP4_RS05190 ee415c8372cb6e01a6f62ad0778e3ea6 369 SUPERFAMILY SSF52540 6 242 3.15E-76 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS05190 ee415c8372cb6e01a6f62ad0778e3ea6 369 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS05190 ee415c8372cb6e01a6f62ad0778e3ea6 369 Gene3D G3DSA:3.40.50.300 4 237 1.2E-70 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS05190 ee415c8372cb6e01a6f62ad0778e3ea6 369 Pfam PF00005 ABC transporter 23 164 3.6E-32 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS05190 ee415c8372cb6e01a6f62ad0778e3ea6 369 SMART SM00382 31 214 8.9E-15 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS20635 c5855e4f4e72a5814254c8ed73ce0f09 484 Hamap MF_00028 Cobyric acid synthase [cobQ]. 1 484 214.352 T 22-04-2016 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 UniPathway: UPA00148 PP4_RS20635 c5855e4f4e72a5814254c8ed73ce0f09 484 Pfam PF07685 CobB/CobQ-like glutamine amidotransferase domain 250 433 2.7E-57 T 22-04-2016 IPR011698 CobB/CobQ-like glutamine amidotransferase GO:0003824|GO:0009236 UniPathway: UPA00148 PP4_RS20635 c5855e4f4e72a5814254c8ed73ce0f09 484 TIGRFAM TIGR00313 cobQ: cobyric acid synthase CobQ 4 474 3.5E-143 T 22-04-2016 IPR004459 Cobyric acid synthase CobQ GO:0003824|GO:0009236 UniPathway: UPA00148 PP4_RS20635 c5855e4f4e72a5814254c8ed73ce0f09 484 SUPERFAMILY SSF52317 250 443 2.69E-38 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS20635 c5855e4f4e72a5814254c8ed73ce0f09 484 Gene3D G3DSA:3.40.50.300 1 235 6.6E-50 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS20635 c5855e4f4e72a5814254c8ed73ce0f09 484 Gene3D G3DSA:3.40.50.880 250 442 2.1E-29 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS20635 c5855e4f4e72a5814254c8ed73ce0f09 484 PANTHER PTHR21343 1 481 9.0E-227 T 22-04-2016 PP4_RS20635 c5855e4f4e72a5814254c8ed73ce0f09 484 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 4 226 1.9E-25 T 22-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain PP4_RS20635 c5855e4f4e72a5814254c8ed73ce0f09 484 SUPERFAMILY SSF52540 1 241 8.79E-58 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS20635 c5855e4f4e72a5814254c8ed73ce0f09 484 PANTHER PTHR21343:SF1 1 481 9.0E-227 T 22-04-2016 PP4_RS16645 7cb0a67a03b8a17a265e270173c1cd7f 202 SUPERFAMILY SSF117457 3 177 3.66E-60 T 22-04-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 PP4_RS16645 7cb0a67a03b8a17a265e270173c1cd7f 202 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 12 178 7.9E-68 T 22-04-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 PP4_RS16645 7cb0a67a03b8a17a265e270173c1cd7f 202 Gene3D G3DSA:3.20.130.10 2 178 2.0E-70 T 22-04-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 PP4_RS16645 7cb0a67a03b8a17a265e270173c1cd7f 202 PANTHER PTHR30389 1 198 4.9E-94 T 22-04-2016 PP4_RS16645 7cb0a67a03b8a17a265e270173c1cd7f 202 Pfam PF05683 Fumarase C-terminus 8 178 1.0E-41 T 22-04-2016 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 PP4_RS08245 8741a9e866a27454ae4f55a8c85ac0b7 749 Gene3D G3DSA:3.90.1150.10 456 624 3.4E-59 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS08245 8741a9e866a27454ae4f55a8c85ac0b7 749 Pfam PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain 22 143 3.5E-24 T 22-04-2016 IPR005308 Orn/Lys/Arg decarboxylase, N-terminal GO:0016831 PP4_RS08245 8741a9e866a27454ae4f55a8c85ac0b7 749 PANTHER PTHR11751:SF406 544 667 1.0E-184 T 22-04-2016 PP4_RS08245 8741a9e866a27454ae4f55a8c85ac0b7 749 PANTHER PTHR11751:SF406 519 527 1.0E-184 T 22-04-2016 PP4_RS08245 8741a9e866a27454ae4f55a8c85ac0b7 749 PANTHER PTHR11751:SF406 150 491 1.0E-184 T 22-04-2016 PP4_RS08245 8741a9e866a27454ae4f55a8c85ac0b7 749 Gene3D G3DSA:3.90.100.10 625 747 2.8E-33 T 22-04-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 PP4_RS08245 8741a9e866a27454ae4f55a8c85ac0b7 749 ProSitePatterns PS00703 Orn/Lys/Arg decarboxylases family 1 pyridoxal-P attachment site. 388 402 - T 22-04-2016 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 PP4_RS08245 8741a9e866a27454ae4f55a8c85ac0b7 749 SUPERFAMILY SSF55904 605 742 3.14E-39 T 22-04-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 PP4_RS08245 8741a9e866a27454ae4f55a8c85ac0b7 749 SUPERFAMILY SSF53383 149 598 5.46E-109 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS08245 8741a9e866a27454ae4f55a8c85ac0b7 749 PANTHER PTHR11751 544 667 1.0E-184 T 22-04-2016 PP4_RS08245 8741a9e866a27454ae4f55a8c85ac0b7 749 PANTHER PTHR11751 519 527 1.0E-184 T 22-04-2016 PP4_RS08245 8741a9e866a27454ae4f55a8c85ac0b7 749 PANTHER PTHR11751 150 491 1.0E-184 T 22-04-2016 PP4_RS08245 8741a9e866a27454ae4f55a8c85ac0b7 749 Pfam PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain 607 736 3.9E-47 T 22-04-2016 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal GO:0003824 PP4_RS08245 8741a9e866a27454ae4f55a8c85ac0b7 749 Gene3D G3DSA:3.40.640.10 149 451 8.7E-111 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS08245 8741a9e866a27454ae4f55a8c85ac0b7 749 PIRSF PIRSF009393 3 748 5.2E-274 T 22-04-2016 IPR011193 Ornithine/lysine/arginine decarboxylase GO:0005737|GO:0006520|GO:0016831 PP4_RS08245 8741a9e866a27454ae4f55a8c85ac0b7 749 Pfam PF01276 Orn/Lys/Arg decarboxylase, major domain 149 582 3.7E-152 T 22-04-2016 IPR000310 Orn/Lys/Arg decarboxylase, major domain GO:0003824 PP4_RS23355 caed73bb1e833d3957021a203a1712f0 339 Hamap MF_00922 Outer membrane protein assembly factor BamD [bamD]. 1 242 46.777 T 22-04-2016 IPR017689 Outer membrane protein assembly factor BamD PP4_RS23355 caed73bb1e833d3957021a203a1712f0 339 PANTHER PTHR37423 1 290 2.7E-106 T 22-04-2016 PP4_RS23355 caed73bb1e833d3957021a203a1712f0 339 TIGRFAM TIGR03302 OM_YfiO: outer membrane assembly lipoprotein YfiO 5 245 1.4E-83 T 22-04-2016 IPR017689 Outer membrane protein assembly factor BamD PP4_RS23355 caed73bb1e833d3957021a203a1712f0 339 Pfam PF13525 Outer membrane lipoprotein 30 232 3.5E-74 T 22-04-2016 PP4_RS23355 caed73bb1e833d3957021a203a1712f0 339 SUPERFAMILY SSF48452 33 120 2.42E-5 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS07235 76a31ea7ca9d7b1eb284c3ada604fcc6 165 Pfam PF03748 Flagellar basal body-associated protein FliL 65 165 7.1E-20 T 22-04-2016 IPR005503 Flagellar basal body-associated protein FliL GO:0006935|GO:0009425|GO:0071973 PP4_RS07235 76a31ea7ca9d7b1eb284c3ada604fcc6 165 PANTHER PTHR35091:SF1 1 165 1.3E-53 T 22-04-2016 PP4_RS07235 76a31ea7ca9d7b1eb284c3ada604fcc6 165 PANTHER PTHR35091 1 165 1.3E-53 T 22-04-2016 PP4_RS25555 aab5c6a997e7069c8812632354a3c418 559 TIGRFAM TIGR01839 PHA_synth_II: poly(R)-hydroxyalkanoic acid synthase, class II 1 559 0.0 T 22-04-2016 IPR011287 Poly(R)-hydroxyalkanoic acid synthase, class II GO:0016746|GO:0042619 KEGG: 00061+2.3.1.-|KEGG: 00253+2.3.1.-|KEGG: 00261+2.3.1.-|KEGG: 00310+2.3.1.-|KEGG: 00330+2.3.1.-|KEGG: 00332+2.3.1.-|KEGG: 00340+2.3.1.-|KEGG: 00350+2.3.1.-|KEGG: 00564+2.3.1.-|KEGG: 00565+2.3.1.-|KEGG: 00604+2.3.1.-|KEGG: 00623+2.3.1.-|KEGG: 00626+2.3.1.-|KEGG: 00627+2.3.1.-|KEGG: 00642+2.3.1.-|KEGG: 00650+2.3.1.-|KEGG: 00680+2.3.1.-|KEGG: 00903+2.3.1.-|KEGG: 00904+2.3.1.-|KEGG: 00906+2.3.1.-|KEGG: 00940+2.3.1.-|KEGG: 00942+2.3.1.-|KEGG: 00950+2.3.1.-|KEGG: 00960+2.3.1.-|KEGG: 00965+2.3.1.- PP4_RS25555 aab5c6a997e7069c8812632354a3c418 559 Pfam PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus 75 243 5.3E-63 T 22-04-2016 IPR010941 Poly-beta-hydroxybutyrate polymerase, N-terminal domain GO:0042619 KEGG: 00061+2.3.1.-|KEGG: 00253+2.3.1.-|KEGG: 00261+2.3.1.-|KEGG: 00310+2.3.1.-|KEGG: 00330+2.3.1.-|KEGG: 00332+2.3.1.-|KEGG: 00340+2.3.1.-|KEGG: 00350+2.3.1.-|KEGG: 00564+2.3.1.-|KEGG: 00565+2.3.1.-|KEGG: 00604+2.3.1.-|KEGG: 00623+2.3.1.-|KEGG: 00626+2.3.1.-|KEGG: 00627+2.3.1.-|KEGG: 00642+2.3.1.-|KEGG: 00650+2.3.1.-|KEGG: 00680+2.3.1.-|KEGG: 00903+2.3.1.-|KEGG: 00904+2.3.1.-|KEGG: 00906+2.3.1.-|KEGG: 00940+2.3.1.-|KEGG: 00942+2.3.1.-|KEGG: 00950+2.3.1.-|KEGG: 00960+2.3.1.-|KEGG: 00965+2.3.1.- PP4_RS25555 aab5c6a997e7069c8812632354a3c418 559 SUPERFAMILY SSF53474 199 489 2.04E-36 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS25555 aab5c6a997e7069c8812632354a3c418 559 PANTHER PTHR36837 1 559 5.2E-264 T 22-04-2016 PP4_RS25555 aab5c6a997e7069c8812632354a3c418 559 Gene3D G3DSA:3.40.50.1820 161 529 2.7E-55 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS25555 aab5c6a997e7069c8812632354a3c418 559 PANTHER PTHR36837:SF2 1 559 5.2E-264 T 22-04-2016 PP4_RS02680 14dea80a366315b82ee4a9f7b88b1bce 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 135 163 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PP4_RS02680 14dea80a366315b82ee4a9f7b88b1bce 253 PANTHER PTHR24322 6 132 1.9E-61 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS02680 14dea80a366315b82ee4a9f7b88b1bce 253 PANTHER PTHR24322 148 179 1.9E-61 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS02680 14dea80a366315b82ee4a9f7b88b1bce 253 Gene3D G3DSA:3.40.50.720 2 233 7.1E-63 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS02680 14dea80a366315b82ee4a9f7b88b1bce 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 4.0E-23 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS02680 14dea80a366315b82ee4a9f7b88b1bce 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 4.0E-23 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS02680 14dea80a366315b82ee4a9f7b88b1bce 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 74 85 4.0E-23 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS02680 14dea80a366315b82ee4a9f7b88b1bce 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 203 223 4.0E-23 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS02680 14dea80a366315b82ee4a9f7b88b1bce 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 4.0E-23 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS02680 14dea80a366315b82ee4a9f7b88b1bce 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 122 138 4.0E-23 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS02680 14dea80a366315b82ee4a9f7b88b1bce 253 PANTHER PTHR24322:SF392 6 132 1.9E-61 T 22-04-2016 PP4_RS02680 14dea80a366315b82ee4a9f7b88b1bce 253 PANTHER PTHR24322:SF392 148 179 1.9E-61 T 22-04-2016 PP4_RS02680 14dea80a366315b82ee4a9f7b88b1bce 253 SUPERFAMILY SSF51735 2 233 1.77E-60 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS02680 14dea80a366315b82ee4a9f7b88b1bce 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 128 136 2.2E-9 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS02680 14dea80a366315b82ee4a9f7b88b1bce 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 2.2E-9 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS02680 14dea80a366315b82ee4a9f7b88b1bce 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 74 85 2.2E-9 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS02680 14dea80a366315b82ee4a9f7b88b1bce 253 Pfam PF00106 short chain dehydrogenase 2 186 3.4E-54 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS25810 5079a2fdf400f5883707bc0a064e92c0 438 PANTHER PTHR21666:SF213 1 265 3.2E-105 T 22-04-2016 PP4_RS25810 5079a2fdf400f5883707bc0a064e92c0 438 PANTHER PTHR21666:SF213 281 437 3.2E-105 T 22-04-2016 PP4_RS25810 5079a2fdf400f5883707bc0a064e92c0 438 Gene3D G3DSA:2.70.70.10 307 437 2.7E-35 T 22-04-2016 PP4_RS25810 5079a2fdf400f5883707bc0a064e92c0 438 SUPERFAMILY SSF51261 242 436 6.28E-47 T 22-04-2016 IPR011055 Duplicated hybrid motif PP4_RS25810 5079a2fdf400f5883707bc0a064e92c0 438 Pfam PF01551 Peptidase family M23 339 432 7.0E-25 T 22-04-2016 IPR016047 Peptidase M23 PP4_RS25810 5079a2fdf400f5883707bc0a064e92c0 438 PANTHER PTHR21666 1 265 3.2E-105 T 22-04-2016 PP4_RS25810 5079a2fdf400f5883707bc0a064e92c0 438 PANTHER PTHR21666 281 437 3.2E-105 T 22-04-2016 PP4_RS27100 b88cc8ae831ae65851008b9e02f099bb 122 PANTHER PTHR39335 26 122 1.1E-42 T 22-04-2016 PP4_RS27100 b88cc8ae831ae65851008b9e02f099bb 122 Pfam PF03640 Secreted repeat of unknown function 28 66 5.0E-14 T 22-04-2016 IPR005297 Lipoprotein repeat PP4_RS27100 b88cc8ae831ae65851008b9e02f099bb 122 Pfam PF03640 Secreted repeat of unknown function 80 121 3.9E-21 T 22-04-2016 IPR005297 Lipoprotein repeat PP4_RS27100 b88cc8ae831ae65851008b9e02f099bb 122 PIRSF PIRSF029720 1 122 2.5E-53 T 22-04-2016 IPR014558 Uncharacterised conserved lipoprotein PP4_RS17185 e982be152a7bd58ac7095e06fd07d366 786 PANTHER PTHR10322 71 781 2.3E-194 T 22-04-2016 PP4_RS17185 e982be152a7bd58ac7095e06fd07d366 786 Gene3D G3DSA:3.30.420.10 150 365 3.9E-33 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PP4_RS17185 e982be152a7bd58ac7095e06fd07d366 786 Pfam PF00136 DNA polymerase family B 381 739 3.5E-38 T 22-04-2016 IPR006134 DNA-directed DNA polymerase, family B, multifunctional domain GO:0000166|GO:0003677 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS17185 e982be152a7bd58ac7095e06fd07d366 786 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 490 502 7.1E-10 T 22-04-2016 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS17185 e982be152a7bd58ac7095e06fd07d366 786 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 416 429 7.1E-10 T 22-04-2016 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS17185 e982be152a7bd58ac7095e06fd07d366 786 PRINTS PR00106 DNA-directed DNA-polymerase family B signature 542 550 7.1E-10 T 22-04-2016 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS17185 e982be152a7bd58ac7095e06fd07d366 786 Pfam PF03104 DNA polymerase family B, exonuclease domain 76 246 1.8E-8 T 22-04-2016 IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS17185 e982be152a7bd58ac7095e06fd07d366 786 Gene3D G3DSA:3.90.1600.10 394 432 1.3E-11 T 22-04-2016 IPR023211 DNA polymerase, palm domain KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS17185 e982be152a7bd58ac7095e06fd07d366 786 Gene3D G3DSA:3.90.1600.10 513 570 1.3E-11 T 22-04-2016 IPR023211 DNA polymerase, palm domain KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS17185 e982be152a7bd58ac7095e06fd07d366 786 ProSitePatterns PS00116 DNA polymerase family B signature. 544 552 - T 22-04-2016 IPR017964 DNA-directed DNA polymerase, family B, conserved site GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS17185 e982be152a7bd58ac7095e06fd07d366 786 SMART SM00486 150 556 9.5E-65 T 22-04-2016 IPR006172 DNA-directed DNA polymerase, family B GO:0000166|GO:0003676|GO:0003887 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS17185 e982be152a7bd58ac7095e06fd07d366 786 SUPERFAMILY SSF53098 4 390 3.04E-88 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PP4_RS17185 e982be152a7bd58ac7095e06fd07d366 786 SUPERFAMILY SSF56672 386 781 7.79E-114 T 22-04-2016 PP4_RS03305 e44a3b776fdcf149a4fba8777361bfe8 257 SMART SM00421 186 243 9.4E-18 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS03305 e44a3b776fdcf149a4fba8777361bfe8 257 SMART SM00448 8 122 6.3E-27 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS03305 e44a3b776fdcf149a4fba8777361bfe8 257 Pfam PF00196 Bacterial regulatory proteins, luxR family 188 241 1.3E-13 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS03305 e44a3b776fdcf149a4fba8777361bfe8 257 Gene3D G3DSA:3.40.50.2300 6 130 5.6E-31 T 22-04-2016 PP4_RS03305 e44a3b776fdcf149a4fba8777361bfe8 257 PANTHER PTHR26402 168 241 4.1E-40 T 22-04-2016 PP4_RS03305 e44a3b776fdcf149a4fba8777361bfe8 257 PANTHER PTHR26402 8 137 4.1E-40 T 22-04-2016 PP4_RS03305 e44a3b776fdcf149a4fba8777361bfe8 257 Gene3D G3DSA:1.10.10.10 176 242 4.4E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS03305 e44a3b776fdcf149a4fba8777361bfe8 257 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 219 231 6.7E-9 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS03305 e44a3b776fdcf149a4fba8777361bfe8 257 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 203 219 6.7E-9 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS03305 e44a3b776fdcf149a4fba8777361bfe8 257 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 189 203 6.7E-9 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS03305 e44a3b776fdcf149a4fba8777361bfe8 257 Pfam PF00072 Response regulator receiver domain 11 122 4.1E-21 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS03305 e44a3b776fdcf149a4fba8777361bfe8 257 SUPERFAMILY SSF46894 177 242 7.82E-17 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS03305 e44a3b776fdcf149a4fba8777361bfe8 257 SUPERFAMILY SSF52172 6 156 5.41E-33 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS06685 7ab75f5f41c6d1c7460a4056c535b1b5 265 Gene3D G3DSA:3.30.30.10 182 205 8.4E-4 T 22-04-2016 IPR003614 Knottin, scorpion toxin-like GO:0006952 PP4_RS06685 7ab75f5f41c6d1c7460a4056c535b1b5 265 Gene3D G3DSA:3.60.21.10 206 251 3.1E-32 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS06685 7ab75f5f41c6d1c7460a4056c535b1b5 265 Gene3D G3DSA:3.60.21.10 16 149 3.1E-32 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS06685 7ab75f5f41c6d1c7460a4056c535b1b5 265 PANTHER PTHR34990 2 260 4.5E-138 T 22-04-2016 PP4_RS06685 7ab75f5f41c6d1c7460a4056c535b1b5 265 PANTHER PTHR34990:SF2 2 260 4.5E-138 T 22-04-2016 PP4_RS06685 7ab75f5f41c6d1c7460a4056c535b1b5 265 SUPERFAMILY SSF56300 15 136 1.38E-31 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS06685 7ab75f5f41c6d1c7460a4056c535b1b5 265 SUPERFAMILY SSF56300 192 250 1.38E-31 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS06685 7ab75f5f41c6d1c7460a4056c535b1b5 265 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 17 231 6.7E-13 T 22-04-2016 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type PP4_RS13150 4449aa34f1eedd152f503b81eb221fe2 177 Pfam PF01883 Domain of unknown function DUF59 23 83 6.7E-13 T 22-04-2016 IPR002744 Domain of unknown function DUF59 PP4_RS13150 4449aa34f1eedd152f503b81eb221fe2 177 TIGRFAM TIGR02159 PA_CoA_Oxy4: phenylacetate-CoA oxygenase, PaaJ subunit 31 177 4.4E-59 T 22-04-2016 IPR011883 Phenylacetate-CoA oxygenase, PaaJ subunit UniPathway: UPA00930 PP4_RS13150 4449aa34f1eedd152f503b81eb221fe2 177 SUPERFAMILY SSF117916 23 114 5.56E-22 T 22-04-2016 PP4_RS21620 a289fb94efe210fd93a563e6251eec7a 226 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 140 153 - T 22-04-2016 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 PP4_RS21620 a289fb94efe210fd93a563e6251eec7a 226 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 52 61 - T 22-04-2016 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562|UniPathway: UPA00227|UniPathway: UPA00856 PP4_RS21620 a289fb94efe210fd93a563e6251eec7a 226 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 22 221 6.1E-78 T 22-04-2016 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 PP4_RS21620 a289fb94efe210fd93a563e6251eec7a 226 SUPERFAMILY SSF51569 20 222 8.24E-66 T 22-04-2016 PP4_RS21620 a289fb94efe210fd93a563e6251eec7a 226 Gene3D G3DSA:3.20.20.70 16 224 2.6E-72 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS21620 a289fb94efe210fd93a563e6251eec7a 226 Pfam PF01081 KDPG and KHG aldolase 20 215 1.6E-94 T 22-04-2016 IPR000887 KDPG/KHG aldolase GO:0008152|GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 PP4_RS21620 a289fb94efe210fd93a563e6251eec7a 226 PANTHER PTHR30246:SF0 11 224 2.9E-106 T 22-04-2016 PP4_RS21620 a289fb94efe210fd93a563e6251eec7a 226 PANTHER PTHR30246 11 224 2.9E-106 T 22-04-2016 PP4_RS16970 73813a76ae32128d06a62927b35ba6aa 199 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 68 3.2E-11 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS16970 73813a76ae32128d06a62927b35ba6aa 199 PANTHER PTHR30055:SF71 5 146 2.5E-37 T 22-04-2016 PP4_RS16970 73813a76ae32128d06a62927b35ba6aa 199 PANTHER PTHR30055 5 146 2.5E-37 T 22-04-2016 PP4_RS16970 73813a76ae32128d06a62927b35ba6aa 199 Gene3D G3DSA:1.10.357.10 5 196 6.9E-26 T 22-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PP4_RS16970 73813a76ae32128d06a62927b35ba6aa 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 43 66 2.8E-7 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS16970 73813a76ae32128d06a62927b35ba6aa 199 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 22 35 2.8E-7 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS16970 73813a76ae32128d06a62927b35ba6aa 199 SUPERFAMILY SSF46689 10 84 3.54E-17 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS16925 ac5967a67dd1fe73bb25fb64a230b9e9 311 SUPERFAMILY SSF102198 58 310 6.54E-24 T 22-04-2016 PP4_RS16925 ac5967a67dd1fe73bb25fb64a230b9e9 311 Gene3D G3DSA:3.50.30.50 58 310 3.1E-27 T 22-04-2016 PP4_RS16925 ac5967a67dd1fe73bb25fb64a230b9e9 311 Pfam PF04199 Putative cyclase 62 247 1.3E-26 T 22-04-2016 IPR007325 Kynurenine formamidase GO:0004061|GO:0019441 KEGG: 00380+3.5.1.9|KEGG: 00630+3.5.1.9|MetaCyc: PWY-5651|MetaCyc: PWY-6309|MetaCyc: PWY-7717|MetaCyc: PWY-7733|MetaCyc: PWY-7734|UniPathway: UPA00333 PP4_RS16925 ac5967a67dd1fe73bb25fb64a230b9e9 311 PANTHER PTHR34861 30 311 1.9E-30 T 22-04-2016 PP4_RS03525 8f705854e21919e4abdd7e85ba8717f2 584 Gene3D G3DSA:3.40.50.150 391 565 2.6E-11 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS03525 8f705854e21919e4abdd7e85ba8717f2 584 Pfam PF12147 Putative methyltransferase 275 582 1.2E-153 T 22-04-2016 IPR022744 Methyltransferase domain, putative PP4_RS03525 8f705854e21919e4abdd7e85ba8717f2 584 PANTHER PTHR11614 1 303 5.5E-176 T 22-04-2016 PP4_RS03525 8f705854e21919e4abdd7e85ba8717f2 584 SUPERFAMILY SSF53474 5 282 6.46E-38 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS03525 8f705854e21919e4abdd7e85ba8717f2 584 Pfam PF12146 Serine aminopeptidase, S33 30 266 9.3E-70 T 22-04-2016 IPR022742 Serine aminopeptidase, S33 PP4_RS03525 8f705854e21919e4abdd7e85ba8717f2 584 Gene3D G3DSA:3.40.50.1820 13 280 2.3E-38 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS03525 8f705854e21919e4abdd7e85ba8717f2 584 SUPERFAMILY SSF53335 398 574 4.43E-16 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS03525 8f705854e21919e4abdd7e85ba8717f2 584 PANTHER PTHR11614:SF106 1 303 5.5E-176 T 22-04-2016 PP4_RS04195 67124644f6763d9c4d08751c11f3b20b 364 PANTHER PTHR12169:SF11 1 364 2.6E-194 T 22-04-2016 PP4_RS04195 67124644f6763d9c4d08751c11f3b20b 364 Pfam PF03969 AFG1-like ATPase 1 360 8.2E-162 T 22-04-2016 IPR005654 ATPase, AFG1-like GO:0005524 PP4_RS04195 67124644f6763d9c4d08751c11f3b20b 364 SUPERFAMILY SSF52540 48 190 3.7E-14 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS04195 67124644f6763d9c4d08751c11f3b20b 364 Gene3D G3DSA:3.40.50.300 5 169 1.2E-24 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS04195 67124644f6763d9c4d08751c11f3b20b 364 Hamap MF_01919 Cell division protein ZapE [zapE]. 1 364 54.201 T 22-04-2016 IPR030870 Cell division protein ZapE GO:0016887|GO:0051301 PP4_RS04195 67124644f6763d9c4d08751c11f3b20b 364 PANTHER PTHR12169 1 364 2.6E-194 T 22-04-2016 IPR005654 ATPase, AFG1-like GO:0005524 PP4_RS24270 45ec9da52697095cbd37363b8c5989cb 325 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 288 303 7.8E-8 T 22-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PP4_RS24270 45ec9da52697095cbd37363b8c5989cb 325 PRINTS PR00032 AraC bacterial regulatory protein HTH signature 303 319 7.8E-8 T 22-04-2016 IPR020449 Transcription regulator HTH, AraC- type GO:0003700|GO:0006355 PP4_RS24270 45ec9da52697095cbd37363b8c5989cb 325 SUPERFAMILY SSF46689 270 322 1.61E-12 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS24270 45ec9da52697095cbd37363b8c5989cb 325 Gene3D G3DSA:1.10.10.60 270 322 2.3E-18 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS24270 45ec9da52697095cbd37363b8c5989cb 325 PANTHER PTHR11019 70 322 4.3E-31 T 22-04-2016 PP4_RS24270 45ec9da52697095cbd37363b8c5989cb 325 PANTHER PTHR11019:SF50 70 322 4.3E-31 T 22-04-2016 PP4_RS24270 45ec9da52697095cbd37363b8c5989cb 325 Pfam PF14525 AraC-binding-like domain 21 200 3.2E-22 T 22-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PP4_RS24270 45ec9da52697095cbd37363b8c5989cb 325 SUPERFAMILY SSF51215 79 146 1.96E-6 T 22-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PP4_RS24270 45ec9da52697095cbd37363b8c5989cb 325 Gene3D G3DSA:2.60.120.280 80 149 3.0E-5 T 22-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PP4_RS24270 45ec9da52697095cbd37363b8c5989cb 325 SMART SM00342 234 319 1.4E-17 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS24270 45ec9da52697095cbd37363b8c5989cb 325 Pfam PF12833 Helix-turn-helix domain 243 320 2.5E-16 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS03990 702b1b6dafe62f812a9f6deab63fb16e 108 ProDom PD030562 SUPPRESSOR HTRA PROTEASE TRANSCRIPTIONAL REGULATOR HTAR SOHA ABRB YDCA BLL1688 5 97 1.0E-47 T 22-04-2016 PP4_RS03990 702b1b6dafe62f812a9f6deab63fb16e 108 SMART SM00966 9 55 0.0021 T 22-04-2016 IPR007159 SpoVT-AbrB domain GO:0003677 PP4_RS03990 702b1b6dafe62f812a9f6deab63fb16e 108 SUPERFAMILY SSF89447 7 49 5.06E-7 T 22-04-2016 PP4_RS03990 702b1b6dafe62f812a9f6deab63fb16e 108 Pfam PF15937 prlF antitoxin for toxin YhaV_toxin 8 106 1.1E-36 T 22-04-2016 IPR031848 PrlF antitoxin GO:0001558|GO:0003700|GO:0097351 PP4_RS03990 702b1b6dafe62f812a9f6deab63fb16e 108 Gene3D G3DSA:2.10.260.10 10 51 8.1E-5 T 22-04-2016 PP4_RS22050 5274d3b57346d9f83d7228dbea832f4c 123 Pfam PF03330 Lytic transglycolase 29 118 5.5E-25 T 22-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain PP4_RS22050 5274d3b57346d9f83d7228dbea832f4c 123 Gene3D G3DSA:2.40.40.10 65 116 5.7E-8 T 22-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain PP4_RS22050 5274d3b57346d9f83d7228dbea832f4c 123 PANTHER PTHR34183 23 122 7.8E-48 T 22-04-2016 PP4_RS22050 5274d3b57346d9f83d7228dbea832f4c 123 SUPERFAMILY SSF50685 27 117 8.37E-14 T 22-04-2016 IPR009009 RlpA-like protein, double-psi beta-barrel domain PP4_RS22050 5274d3b57346d9f83d7228dbea832f4c 123 TIGRFAM TIGR00413 rlpA: rare lipoprotein A 31 119 2.7E-42 T 22-04-2016 IPR012997 Rare lipoprotein A PP4_RS21355 168b6ccdcd9c2e934f776f5a89a59f6b 469 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 102 116 - T 22-04-2016 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 PP4_RS21355 168b6ccdcd9c2e934f776f5a89a59f6b 469 Gene3D G3DSA:3.40.50.1100 202 436 4.0E-97 T 22-04-2016 PP4_RS21355 168b6ccdcd9c2e934f776f5a89a59f6b 469 TIGRFAM TIGR00260 thrC: threonine synthase 69 430 1.8E-82 T 22-04-2016 IPR004450 Threonine synthase-like PP4_RS21355 168b6ccdcd9c2e934f776f5a89a59f6b 469 PANTHER PTHR10314:SF1 53 329 6.1E-167 T 22-04-2016 PP4_RS21355 168b6ccdcd9c2e934f776f5a89a59f6b 469 PANTHER PTHR10314:SF1 361 468 6.1E-167 T 22-04-2016 PP4_RS21355 168b6ccdcd9c2e934f776f5a89a59f6b 469 PANTHER PTHR10314:SF1 25 36 6.1E-167 T 22-04-2016 PP4_RS21355 168b6ccdcd9c2e934f776f5a89a59f6b 469 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 92 401 7.9E-25 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PP4_RS21355 168b6ccdcd9c2e934f776f5a89a59f6b 469 Gene3D G3DSA:3.90.1380.10 1 85 4.6E-31 T 22-04-2016 IPR029144 Threonine synthase, N-terminal PP4_RS21355 168b6ccdcd9c2e934f776f5a89a59f6b 469 SUPERFAMILY SSF53686 1 461 2.88E-165 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PP4_RS21355 168b6ccdcd9c2e934f776f5a89a59f6b 469 PANTHER PTHR10314 53 329 6.1E-167 T 22-04-2016 PP4_RS21355 168b6ccdcd9c2e934f776f5a89a59f6b 469 PANTHER PTHR10314 361 468 6.1E-167 T 22-04-2016 PP4_RS21355 168b6ccdcd9c2e934f776f5a89a59f6b 469 PANTHER PTHR10314 25 36 6.1E-167 T 22-04-2016 PP4_RS21355 168b6ccdcd9c2e934f776f5a89a59f6b 469 Gene3D G3DSA:3.40.50.1100 128 201 3.1E-7 T 22-04-2016 PP4_RS21355 168b6ccdcd9c2e934f776f5a89a59f6b 469 Pfam PF14821 Threonine synthase N terminus 2 80 1.1E-29 T 22-04-2016 IPR029144 Threonine synthase, N-terminal PP4_RS06365 a7264ba2054dbef837a669d402726493 246 Pfam PF03781 Sulfatase-modifying factor enzyme 1 1 244 4.5E-58 T 22-04-2016 IPR005532 Sulfatase-modifying factor enzyme PP4_RS06365 a7264ba2054dbef837a669d402726493 246 PANTHER PTHR23150 1 246 2.9E-62 T 22-04-2016 PP4_RS06365 a7264ba2054dbef837a669d402726493 246 Gene3D G3DSA:3.90.1580.10 1 245 8.2E-60 T 22-04-2016 IPR005532 Sulfatase-modifying factor enzyme PP4_RS06365 a7264ba2054dbef837a669d402726493 246 SUPERFAMILY SSF56436 1 245 1.01E-61 T 22-04-2016 IPR016187 C-type lectin fold PP4_RS14165 2671773870585e6f705691a0bc4e8c1f 296 SUPERFAMILY SSF161098 95 281 2.75E-25 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS14165 2671773870585e6f705691a0bc4e8c1f 296 PANTHER PTHR30465 18 288 2.1E-81 T 22-04-2016 PP4_RS14165 2671773870585e6f705691a0bc4e8c1f 296 PANTHER PTHR30465:SF10 18 288 2.1E-81 T 22-04-2016 PP4_RS14165 2671773870585e6f705691a0bc4e8c1f 296 Gene3D G3DSA:1.10.3720.10 94 292 7.5E-24 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS14165 2671773870585e6f705691a0bc4e8c1f 296 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 117 289 2.6E-26 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS09345 3e782fbc99d3702d87e362f96e07c36a 226 Gene3D G3DSA:1.20.910.10 1 218 1.4E-16 T 22-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 PP4_RS09345 3e782fbc99d3702d87e362f96e07c36a 226 SUPERFAMILY SSF48613 1 214 4.59E-63 T 22-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 PP4_RS09345 3e782fbc99d3702d87e362f96e07c36a 226 Pfam PF14518 Iron-containing redox enzyme 39 206 4.1E-24 T 22-04-2016 IPR028201 PqqC-like protein PP4_RS26220 c5937f9b5f90e031dbc9408ae834e9f5 750 PANTHER PTHR24093:SF317 45 741 3.1E-264 T 22-04-2016 PP4_RS26220 c5937f9b5f90e031dbc9408ae834e9f5 750 SUPERFAMILY SSF81665 345 436 3.79E-16 T 22-04-2016 PP4_RS26220 c5937f9b5f90e031dbc9408ae834e9f5 750 SUPERFAMILY SSF81665 194 247 3.79E-16 T 22-04-2016 PP4_RS26220 c5937f9b5f90e031dbc9408ae834e9f5 750 Pfam PF00702 haloacid dehalogenase-like hydrolase 443 657 8.5E-43 T 22-04-2016 PP4_RS26220 c5937f9b5f90e031dbc9408ae834e9f5 750 PANTHER PTHR24093 45 741 3.1E-264 T 22-04-2016 PP4_RS26220 c5937f9b5f90e031dbc9408ae834e9f5 750 Gene3D G3DSA:3.40.1110.10 460 571 3.2E-17 T 22-04-2016 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 PP4_RS26220 c5937f9b5f90e031dbc9408ae834e9f5 750 Pfam PF00122 E1-E2 ATPase 214 436 6.8E-66 T 22-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 PP4_RS26220 c5937f9b5f90e031dbc9408ae834e9f5 750 Gene3D G3DSA:3.40.50.1000 418 459 9.1E-43 T 22-04-2016 IPR023214 HAD-like domain PP4_RS26220 c5937f9b5f90e031dbc9408ae834e9f5 750 Gene3D G3DSA:3.40.50.1000 572 713 9.1E-43 T 22-04-2016 IPR023214 HAD-like domain PP4_RS26220 c5937f9b5f90e031dbc9408ae834e9f5 750 SUPERFAMILY SSF56784 444 463 2.95E-55 T 22-04-2016 IPR023214 HAD-like domain PP4_RS26220 c5937f9b5f90e031dbc9408ae834e9f5 750 SUPERFAMILY SSF56784 502 744 2.95E-55 T 22-04-2016 IPR023214 HAD-like domain PP4_RS26220 c5937f9b5f90e031dbc9408ae834e9f5 750 Gene3D G3DSA:3.30.70.100 56 119 5.2E-6 T 22-04-2016 PP4_RS26220 c5937f9b5f90e031dbc9408ae834e9f5 750 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 216 730 3.1E-79 T 22-04-2016 IPR001757 P-type ATPase GO:0016021 PP4_RS26220 c5937f9b5f90e031dbc9408ae834e9f5 750 Gene3D G3DSA:2.70.150.10 193 345 3.0E-26 T 22-04-2016 IPR008250 P-type ATPase, A domain GO:0000166|GO:0046872 PP4_RS26220 c5937f9b5f90e031dbc9408ae834e9f5 750 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 193 747 3.4E-177 T 22-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 PP4_RS26220 c5937f9b5f90e031dbc9408ae834e9f5 750 SUPERFAMILY SSF81653 247 344 5.1E-23 T 22-04-2016 PP4_RS26220 c5937f9b5f90e031dbc9408ae834e9f5 750 SUPERFAMILY SSF55008 51 120 2.52E-9 T 22-04-2016 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 PP4_RS26220 c5937f9b5f90e031dbc9408ae834e9f5 750 PRINTS PR00941 Cadmium-transporting ATPase signature 56 65 1.8E-5 T 22-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 PP4_RS26220 c5937f9b5f90e031dbc9408ae834e9f5 750 PRINTS PR00941 Cadmium-transporting ATPase signature 310 326 1.8E-5 T 22-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 PP4_RS26220 c5937f9b5f90e031dbc9408ae834e9f5 750 PRINTS PR00941 Cadmium-transporting ATPase signature 228 248 1.8E-5 T 22-04-2016 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 PP4_RS26220 c5937f9b5f90e031dbc9408ae834e9f5 750 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 447 453 - T 22-04-2016 IPR018303 P-type ATPase, phosphorylation site PP4_RS26220 c5937f9b5f90e031dbc9408ae834e9f5 750 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 445 459 2.4E-24 T 22-04-2016 PP4_RS26220 c5937f9b5f90e031dbc9408ae834e9f5 750 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 294 308 2.4E-24 T 22-04-2016 PP4_RS26220 c5937f9b5f90e031dbc9408ae834e9f5 750 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 668 680 2.4E-24 T 22-04-2016 PP4_RS26220 c5937f9b5f90e031dbc9408ae834e9f5 750 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 644 663 2.4E-24 T 22-04-2016 PP4_RS26220 c5937f9b5f90e031dbc9408ae834e9f5 750 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 591 601 2.4E-24 T 22-04-2016 PP4_RS16055 c8745836371cf83b2021e05fe6c90aef 312 Pfam PF03466 LysR substrate binding domain 99 305 6.1E-26 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS16055 c8745836371cf83b2021e05fe6c90aef 312 Gene3D G3DSA:3.40.190.10 102 188 1.1E-11 T 22-04-2016 PP4_RS16055 c8745836371cf83b2021e05fe6c90aef 312 Gene3D G3DSA:1.10.10.10 14 95 1.4E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16055 c8745836371cf83b2021e05fe6c90aef 312 SUPERFAMILY SSF53850 99 306 3.26E-29 T 22-04-2016 PP4_RS16055 c8745836371cf83b2021e05fe6c90aef 312 PANTHER PTHR30126 11 299 1.0E-53 T 22-04-2016 PP4_RS16055 c8745836371cf83b2021e05fe6c90aef 312 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 15 72 2.8E-16 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16055 c8745836371cf83b2021e05fe6c90aef 312 Gene3D G3DSA:3.40.190.10 189 274 8.0E-11 T 22-04-2016 PP4_RS16055 c8745836371cf83b2021e05fe6c90aef 312 PANTHER PTHR30126:SF3 11 299 1.0E-53 T 22-04-2016 PP4_RS16055 c8745836371cf83b2021e05fe6c90aef 312 SUPERFAMILY SSF46785 12 116 3.06E-17 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS26145 f37f06345d5932945352d0232498b914 270 PANTHER PTHR22993 1 270 1.2E-125 T 22-04-2016 PP4_RS26145 f37f06345d5932945352d0232498b914 270 SMART SM00898 2 116 3.9E-53 T 22-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 PP4_RS26145 f37f06345d5932945352d0232498b914 270 SUPERFAMILY SSF46946 131 222 1.83E-26 T 22-04-2016 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 PP4_RS26145 f37f06345d5932945352d0232498b914 270 SUPERFAMILY SSF81624 2 135 1.18E-39 T 22-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 PP4_RS26145 f37f06345d5932945352d0232498b914 270 Pfam PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain 1 115 1.2E-33 T 22-04-2016 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain GO:0003684|GO:0003906|GO:0006284|GO:0008270|GO:0016799 PP4_RS26145 f37f06345d5932945352d0232498b914 270 TIGRFAM TIGR00577 fpg: DNA-formamidopyrimidine glycosylase 1 269 1.3E-89 T 22-04-2016 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 PP4_RS26145 f37f06345d5932945352d0232498b914 270 SMART SM01232 130 222 3.3E-43 T 22-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 PP4_RS26145 f37f06345d5932945352d0232498b914 270 SUPERFAMILY SSF57716 218 269 3.8E-17 T 22-04-2016 PP4_RS26145 f37f06345d5932945352d0232498b914 270 PANTHER PTHR22993:SF15 1 270 1.2E-125 T 22-04-2016 PP4_RS26145 f37f06345d5932945352d0232498b914 270 Pfam PF06827 Zinc finger found in FPG and IleRS 242 269 4.1E-9 T 22-04-2016 IPR010663 Zinc finger, FPG/IleRS-type PP4_RS26145 f37f06345d5932945352d0232498b914 270 Gene3D G3DSA:1.10.8.50 131 270 1.6E-47 T 22-04-2016 PP4_RS26145 f37f06345d5932945352d0232498b914 270 Pfam PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain 130 219 1.2E-20 T 22-04-2016 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding GO:0003684|GO:0003906|GO:0006289|GO:0008270|GO:0016799 PP4_RS26145 f37f06345d5932945352d0232498b914 270 Gene3D G3DSA:3.20.190.10 2 130 2.2E-38 T 22-04-2016 PP4_RS26145 f37f06345d5932945352d0232498b914 270 ProSitePatterns PS01242 Zinc finger FPG-type signature. 245 269 - T 22-04-2016 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site GO:0003677|GO:0003906|GO:0006281|GO:0008270|GO:0016799 PP4_RS26145 f37f06345d5932945352d0232498b914 270 Hamap MF_00103 Formamidopyrimidine-DNA glycosylase [mutM]. 1 270 44.363 T 22-04-2016 IPR020629 Formamidopyrimidine-DNA glycosylase GO:0003906|GO:0006281|GO:0008270|GO:0008534 PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 SUPERFAMILY SSF55785 728 838 3.49E-23 T 22-04-2016 IPR000014 PAS domain PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 SUPERFAMILY SSF55073 846 1007 4.16E-48 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 838 1004 1.0E-39 T 22-04-2016 IPR000160 GGDEF domain PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 SUPERFAMILY SSF141868 1021 1269 1.23E-93 T 22-04-2016 IPR001633 EAL domain PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 Gene3D G3DSA:3.30.450.20 428 573 9.9E-28 T 22-04-2016 PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 Gene3D G3DSA:3.20.20.450 1019 1269 8.7E-106 T 22-04-2016 IPR001633 EAL domain PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 Gene3D G3DSA:3.30.70.270 842 1013 5.7E-57 T 22-04-2016 PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 Pfam PF00563 EAL domain 1022 1257 2.5E-76 T 22-04-2016 IPR001633 EAL domain PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 SMART SM00091 447 517 0.0055 T 22-04-2016 IPR000014 PAS domain PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 SMART SM00091 580 646 3.1 T 22-04-2016 IPR000014 PAS domain PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 SMART SM00091 716 782 1.4E-6 T 22-04-2016 IPR000014 PAS domain PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 Gene3D G3DSA:3.30.450.20 706 828 4.7E-22 T 22-04-2016 PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 Pfam PF08447 PAS fold 471 561 4.7E-11 T 22-04-2016 IPR013655 PAS fold-3 GO:0005515 PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 PANTHER PTHR10799:SF774 669 847 1.3E-80 T 22-04-2016 PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 PANTHER PTHR10799:SF774 874 1116 1.3E-80 T 22-04-2016 PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 Pfam PF00990 Diguanylate cyclase, GGDEF domain 841 1002 4.7E-48 T 22-04-2016 IPR000160 GGDEF domain PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 Gene3D G3DSA:3.30.450.20 340 427 1.2E-12 T 22-04-2016 PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 Gene3D G3DSA:3.30.450.20 279 305 1.2E-12 T 22-04-2016 PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 Gene3D G3DSA:3.30.450.20 574 705 7.5E-17 T 22-04-2016 PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 PANTHER PTHR10799 29 42 1.3E-80 T 22-04-2016 PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 SMART SM00086 666 708 0.004 T 22-04-2016 IPR001610 PAC motif PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 SMART SM00086 394 435 230.0 T 22-04-2016 IPR001610 PAC motif PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 SMART SM00086 525 568 0.0015 T 22-04-2016 IPR001610 PAC motif PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 SMART SM00086 788 830 1.3E-5 T 22-04-2016 IPR001610 PAC motif PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 PANTHER PTHR10799 874 1116 1.3E-80 T 22-04-2016 PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 Pfam PF13426 PAS domain 593 707 1.2E-5 T 22-04-2016 IPR000014 PAS domain PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 Pfam PF13426 PAS domain 728 829 2.1E-14 T 22-04-2016 IPR000014 PAS domain PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 720 836 2.9E-17 T 22-04-2016 IPR000014 PAS domain PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 576 715 1.3E-9 T 22-04-2016 IPR000014 PAS domain PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 444 574 9.1E-10 T 22-04-2016 IPR000014 PAS domain PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 SUPERFAMILY SSF55785 341 442 2.97E-6 T 22-04-2016 IPR000014 PAS domain PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 PANTHER PTHR10799:SF774 29 42 1.3E-80 T 22-04-2016 PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 SUPERFAMILY SSF55785 565 706 2.62E-14 T 22-04-2016 IPR000014 PAS domain PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 SMART SM00267 830 1006 4.5E-65 T 22-04-2016 IPR000160 GGDEF domain PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 SMART SM00052 1016 1262 7.1E-128 T 22-04-2016 IPR001633 EAL domain PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 SUPERFAMILY SSF55785 432 566 2.44E-16 T 22-04-2016 IPR000014 PAS domain PP4_RS23185 b8b2d85f797357bc846d7a896b7573b0 1276 PANTHER PTHR10799 669 847 1.3E-80 T 22-04-2016 PP4_RS22585 b5b02e9d797ef708ffd63cb3ba853582 496 SMART SM00267 323 494 2.2E-66 T 22-04-2016 IPR000160 GGDEF domain PP4_RS22585 b5b02e9d797ef708ffd63cb3ba853582 496 PANTHER PTHR10799:SF750 264 491 1.3E-32 T 22-04-2016 PP4_RS22585 b5b02e9d797ef708ffd63cb3ba853582 496 Gene3D G3DSA:3.30.450.20 168 292 1.3E-11 T 22-04-2016 PP4_RS22585 b5b02e9d797ef708ffd63cb3ba853582 496 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 331 493 5.2E-50 T 22-04-2016 IPR000160 GGDEF domain PP4_RS22585 b5b02e9d797ef708ffd63cb3ba853582 496 SUPERFAMILY SSF55073 339 492 1.33E-46 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS22585 b5b02e9d797ef708ffd63cb3ba853582 496 Gene3D G3DSA:3.30.70.270 336 492 2.7E-54 T 22-04-2016 PP4_RS22585 b5b02e9d797ef708ffd63cb3ba853582 496 Pfam PF02743 Cache domain 50 281 5.7E-16 T 22-04-2016 IPR033479 Double Cache domain 1 PP4_RS22585 b5b02e9d797ef708ffd63cb3ba853582 496 PANTHER PTHR10799 264 491 1.3E-32 T 22-04-2016 PP4_RS22585 b5b02e9d797ef708ffd63cb3ba853582 496 Pfam PF00990 Diguanylate cyclase, GGDEF domain 334 490 3.6E-48 T 22-04-2016 IPR000160 GGDEF domain PP4_RS19975 0fa4994ce2cd28f30655ef7cb613c9b2 253 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 14 251 8.1E-72 T 22-04-2016 PP4_RS19975 0fa4994ce2cd28f30655ef7cb613c9b2 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.2E-46 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19975 0fa4994ce2cd28f30655ef7cb613c9b2 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 1.2E-46 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19975 0fa4994ce2cd28f30655ef7cb613c9b2 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 83 94 1.2E-46 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19975 0fa4994ce2cd28f30655ef7cb613c9b2 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.2E-46 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19975 0fa4994ce2cd28f30655ef7cb613c9b2 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 1.2E-46 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19975 0fa4994ce2cd28f30655ef7cb613c9b2 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.2E-46 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19975 0fa4994ce2cd28f30655ef7cb613c9b2 253 PANTHER PTHR24321 3 252 2.3E-56 T 22-04-2016 PP4_RS19975 0fa4994ce2cd28f30655ef7cb613c9b2 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 6.9E-12 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19975 0fa4994ce2cd28f30655ef7cb613c9b2 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 6.9E-12 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19975 0fa4994ce2cd28f30655ef7cb613c9b2 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 6.9E-12 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19975 0fa4994ce2cd28f30655ef7cb613c9b2 253 PANTHER PTHR24321:SF6 3 252 2.3E-56 T 22-04-2016 PP4_RS19975 0fa4994ce2cd28f30655ef7cb613c9b2 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 144 172 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PP4_RS19975 0fa4994ce2cd28f30655ef7cb613c9b2 253 Gene3D G3DSA:3.40.50.720 1 251 1.5E-89 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS19975 0fa4994ce2cd28f30655ef7cb613c9b2 253 SUPERFAMILY SSF51735 1 252 5.76E-84 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS26910 c88699c51882e9427f1a006fda62714e 379 PANTHER PTHR23521 1 371 3.0E-86 T 22-04-2016 PP4_RS26910 c88699c51882e9427f1a006fda62714e 379 Gene3D G3DSA:1.20.1250.20 197 367 6.2E-17 T 22-04-2016 PP4_RS26910 c88699c51882e9427f1a006fda62714e 379 Gene3D G3DSA:1.20.1250.20 5 172 5.8E-14 T 22-04-2016 PP4_RS26910 c88699c51882e9427f1a006fda62714e 379 PANTHER PTHR23521:SF2 1 371 3.0E-86 T 22-04-2016 PP4_RS26910 c88699c51882e9427f1a006fda62714e 379 SUPERFAMILY SSF103473 2 368 8.89E-37 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS26910 c88699c51882e9427f1a006fda62714e 379 Pfam PF07690 Major Facilitator Superfamily 204 367 3.8E-14 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS15905 3a445dda69330215f5c335a4de629a8f 253 TIGRFAM TIGR04557 fuse_rel_SoxYZ: quinoprotein dehydrogenase-associated SoxYZ-like carrier 34 249 2.6E-59 T 22-04-2016 IPR030831 Quinoprotein dehydrogenase-associated SoxYZ-like carrier PP4_RS15905 3a445dda69330215f5c335a4de629a8f 253 Pfam PF08770 Sulphur oxidation protein SoxZ 171 251 4.1E-9 T 22-04-2016 IPR014880 Sulphur oxidation protein SoxZ PP4_RS15905 3a445dda69330215f5c335a4de629a8f 253 SUPERFAMILY SSF81296 167 252 2.66E-15 T 22-04-2016 IPR014756 Immunoglobulin E-set PP4_RS15905 3a445dda69330215f5c335a4de629a8f 253 Gene3D G3DSA:2.60.40.10 171 252 2.3E-11 T 22-04-2016 IPR013783 Immunoglobulin-like fold PP4_RS15905 3a445dda69330215f5c335a4de629a8f 253 Pfam PF13501 Sulfur oxidation protein SoxY 39 145 3.7E-24 T 22-04-2016 IPR032711 Ig-like SoxY domain PP4_RS17160 237f9629e2e188e1103ef3c54e07f047 277 Gene3D G3DSA:3.20.20.150 5 269 1.5E-100 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PP4_RS17160 237f9629e2e188e1103ef3c54e07f047 277 SUPERFAMILY SSF51658 25 246 2.73E-11 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PP4_RS17160 237f9629e2e188e1103ef3c54e07f047 277 Hamap MF_00697 UPF0276 protein . 8 276 44.93 T 22-04-2016 IPR007801 Uncharacterised protein family UPF0276 PP4_RS17160 237f9629e2e188e1103ef3c54e07f047 277 Pfam PF05114 Protein of unknown function (DUF692) 8 268 5.7E-102 T 22-04-2016 IPR007801 Uncharacterised protein family UPF0276 PP4_RS17160 237f9629e2e188e1103ef3c54e07f047 277 PANTHER PTHR42194 2 268 2.0E-120 T 22-04-2016 PP4_RS17160 237f9629e2e188e1103ef3c54e07f047 277 PANTHER PTHR42194:SF1 2 268 2.0E-120 T 22-04-2016 PP4_RS00465 24626695b6c7fa31924b8cdf45771fc9 375 ProSitePatterns PS00078 CO II and nitrous oxide reductase dinuclear copper centers signature. 187 235 - T 22-04-2016 IPR001505 Copper centre Cu(A) GO:0005507 PP4_RS00465 24626695b6c7fa31924b8cdf45771fc9 375 TIGRFAM TIGR02866 CoxB: cytochrome c oxidase, subunit II 32 251 3.2E-56 T 22-04-2016 IPR014222 Cytochrome c oxidase, subunit II GO:0016021|GO:0016491 PP4_RS00465 24626695b6c7fa31924b8cdf45771fc9 375 SUPERFAMILY SSF81464 17 111 4.41E-23 T 22-04-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 PP4_RS00465 24626695b6c7fa31924b8cdf45771fc9 375 Gene3D G3DSA:1.10.760.10 288 373 2.7E-24 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS00465 24626695b6c7fa31924b8cdf45771fc9 375 SUPERFAMILY SSF49503 116 257 1.15E-52 T 22-04-2016 IPR008972 Cupredoxin PP4_RS00465 24626695b6c7fa31924b8cdf45771fc9 375 Gene3D G3DSA:1.10.287.90 23 109 6.2E-23 T 22-04-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 PP4_RS00465 24626695b6c7fa31924b8cdf45771fc9 375 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 275 348 1.2E-11 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS00465 24626695b6c7fa31924b8cdf45771fc9 375 PANTHER PTHR22888 1 274 1.7E-119 T 22-04-2016 PP4_RS00465 24626695b6c7fa31924b8cdf45771fc9 375 SUPERFAMILY SSF46626 221 358 2.82E-23 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS00465 24626695b6c7fa31924b8cdf45771fc9 375 PRINTS PR01166 Cytochrome c oxidase subunit II signature 81 93 2.5E-37 T 22-04-2016 PP4_RS00465 24626695b6c7fa31924b8cdf45771fc9 375 PRINTS PR01166 Cytochrome c oxidase subunit II signature 115 134 2.5E-37 T 22-04-2016 PP4_RS00465 24626695b6c7fa31924b8cdf45771fc9 375 PRINTS PR01166 Cytochrome c oxidase subunit II signature 186 206 2.5E-37 T 22-04-2016 PP4_RS00465 24626695b6c7fa31924b8cdf45771fc9 375 PRINTS PR01166 Cytochrome c oxidase subunit II signature 206 223 2.5E-37 T 22-04-2016 PP4_RS00465 24626695b6c7fa31924b8cdf45771fc9 375 PRINTS PR01166 Cytochrome c oxidase subunit II signature 224 241 2.5E-37 T 22-04-2016 PP4_RS00465 24626695b6c7fa31924b8cdf45771fc9 375 PRINTS PR01166 Cytochrome c oxidase subunit II signature 93 113 2.5E-37 T 22-04-2016 PP4_RS00465 24626695b6c7fa31924b8cdf45771fc9 375 PRINTS PR01166 Cytochrome c oxidase subunit II signature 162 183 2.5E-37 T 22-04-2016 PP4_RS00465 24626695b6c7fa31924b8cdf45771fc9 375 Gene3D G3DSA:2.60.40.420 110 287 1.3E-55 T 22-04-2016 IPR008972 Cupredoxin PP4_RS00465 24626695b6c7fa31924b8cdf45771fc9 375 PANTHER PTHR22888:SF2 1 274 1.7E-119 T 22-04-2016 PP4_RS00465 24626695b6c7fa31924b8cdf45771fc9 375 Pfam PF00116 Cytochrome C oxidase subunit II, periplasmic domain 121 240 1.8E-36 T 22-04-2016 IPR002429 Cytochrome c oxidase subunit II C-terminal GO:0004129|GO:0005507|GO:0016020 PP4_RS00465 24626695b6c7fa31924b8cdf45771fc9 375 Pfam PF02790 Cytochrome C oxidase subunit II, transmembrane domain 23 104 3.9E-11 T 22-04-2016 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain GO:0016021|GO:0022900 PP4_RS10070 88ce1a0f38b438b91d9249ab51443f29 269 Gene3D G3DSA:1.10.3720.10 17 266 1.6E-52 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS10070 88ce1a0f38b438b91d9249ab51443f29 269 PANTHER PTHR30193 16 266 7.1E-71 T 22-04-2016 PP4_RS10070 88ce1a0f38b438b91d9249ab51443f29 269 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 265 2.0E-15 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS10070 88ce1a0f38b438b91d9249ab51443f29 269 PANTHER PTHR30193:SF20 16 266 7.1E-71 T 22-04-2016 PP4_RS10070 88ce1a0f38b438b91d9249ab51443f29 269 SUPERFAMILY SSF161098 10 265 2.09E-58 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS15330 8410d254ef4c1e9af5d2759bd7c559ff 400 Hamap MF_01917 Cardiolipin synthase B [clsB]. 2 378 51.465 T 22-04-2016 IPR030872 Cardiolipin synthase B GO:0008808|GO:0032049 PP4_RS15330 8410d254ef4c1e9af5d2759bd7c559ff 400 Gene3D G3DSA:3.30.870.10 200 336 1.9E-29 T 22-04-2016 PP4_RS15330 8410d254ef4c1e9af5d2759bd7c559ff 400 SMART SM00155 108 135 2.3E-5 T 22-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 PP4_RS15330 8410d254ef4c1e9af5d2759bd7c559ff 400 SMART SM00155 280 307 6.5 T 22-04-2016 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 PP4_RS15330 8410d254ef4c1e9af5d2759bd7c559ff 400 Pfam PF13091 PLD-like domain 208 325 1.4E-23 T 22-04-2016 IPR025202 Phospholipase D-like domain PP4_RS15330 8410d254ef4c1e9af5d2759bd7c559ff 400 Pfam PF13091 PLD-like domain 26 154 1.4E-13 T 22-04-2016 IPR025202 Phospholipase D-like domain PP4_RS15330 8410d254ef4c1e9af5d2759bd7c559ff 400 SUPERFAMILY SSF56024 182 354 6.73E-39 T 22-04-2016 PP4_RS15330 8410d254ef4c1e9af5d2759bd7c559ff 400 SUPERFAMILY SSF56024 4 169 1.55E-40 T 22-04-2016 PP4_RS15330 8410d254ef4c1e9af5d2759bd7c559ff 400 PANTHER PTHR21248 1 375 6.3E-103 T 22-04-2016 PP4_RS15330 8410d254ef4c1e9af5d2759bd7c559ff 400 Gene3D G3DSA:3.30.870.10 5 169 4.7E-40 T 22-04-2016 PP4_RS15330 8410d254ef4c1e9af5d2759bd7c559ff 400 PANTHER PTHR21248:SF5 1 375 6.3E-103 T 22-04-2016 PP4_RS13015 b48c914d6db7ff4c1d6dcb505e98f0b3 166 Gene3D G3DSA:1.20.1260.10 42 163 1.6E-6 T 22-04-2016 IPR012347 Ferritin-related PP4_RS13015 b48c914d6db7ff4c1d6dcb505e98f0b3 166 PANTHER PTHR38593 11 165 6.9E-26 T 22-04-2016 PP4_RS13015 b48c914d6db7ff4c1d6dcb505e98f0b3 166 PANTHER PTHR38593:SF2 11 165 6.9E-26 T 22-04-2016 PP4_RS13015 b48c914d6db7ff4c1d6dcb505e98f0b3 166 Pfam PF13628 Domain of unknown function (DUF4142) 27 160 3.7E-40 T 22-04-2016 IPR025419 Domain of unknown function DUF4142 PP4_RS08710 03a7e4af1d3b8129a13a4976a0e3ebf4 327 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 154 4.2E-42 T 22-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 PP4_RS08710 03a7e4af1d3b8129a13a4976a0e3ebf4 327 TIGRFAM TIGR00872 gnd_rel: 6-phosphogluconate dehydrogenase (decarboxylating) 1 325 2.1E-116 T 22-04-2016 IPR004849 6-phosphogluconate dehydrogenase, YqeC-type GO:0055114 PP4_RS08710 03a7e4af1d3b8129a13a4976a0e3ebf4 327 SMART SM01350 185 327 6.4E-6 T 22-04-2016 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 PP4_RS08710 03a7e4af1d3b8129a13a4976a0e3ebf4 327 Gene3D G3DSA:1.10.1040.10 187 303 2.5E-35 T 22-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PP4_RS08710 03a7e4af1d3b8129a13a4976a0e3ebf4 327 PANTHER PTHR11811 1 325 1.6E-159 T 22-04-2016 PP4_RS08710 03a7e4af1d3b8129a13a4976a0e3ebf4 327 SUPERFAMILY SSF51735 1 161 1.72E-48 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS08710 03a7e4af1d3b8129a13a4976a0e3ebf4 327 Pfam PF00393 6-phosphogluconate dehydrogenase, C-terminal domain 185 303 2.8E-21 T 22-04-2016 IPR006114 6-phosphogluconate dehydrogenase, C-terminal GO:0004616|GO:0006098|GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 PP4_RS08710 03a7e4af1d3b8129a13a4976a0e3ebf4 327 Gene3D G3DSA:3.40.50.720 1 186 1.5E-52 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS08710 03a7e4af1d3b8129a13a4976a0e3ebf4 327 PANTHER PTHR11811:SF28 1 325 1.6E-159 T 22-04-2016 PP4_RS08710 03a7e4af1d3b8129a13a4976a0e3ebf4 327 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 174 202 1.3E-18 T 22-04-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 PP4_RS08710 03a7e4af1d3b8129a13a4976a0e3ebf4 327 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 1 24 1.3E-18 T 22-04-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 PP4_RS08710 03a7e4af1d3b8129a13a4976a0e3ebf4 327 PRINTS PR00076 6-phosphogluconate dehydrogenase signature 258 285 1.3E-18 T 22-04-2016 IPR006183 6-phosphogluconate dehydrogenase GO:0055114 KEGG: 00030+1.1.1.44|KEGG: 00480+1.1.1.44|UniPathway: UPA00115 PP4_RS08710 03a7e4af1d3b8129a13a4976a0e3ebf4 327 SUPERFAMILY SSF48179 183 306 8.84E-39 T 22-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PP4_RS06250 5b132e943c1901682329766f58d1f30c 680 SUPERFAMILY SSF50993 4 412 8.37E-83 T 22-04-2016 PP4_RS06250 5b132e943c1901682329766f58d1f30c 680 Gene3D G3DSA:3.40.50.1820 419 658 1.7E-38 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS06250 5b132e943c1901682329766f58d1f30c 680 PANTHER PTHR11757 11 680 3.4E-297 T 22-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 PP4_RS06250 5b132e943c1901682329766f58d1f30c 680 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 607 629 3.0E-53 T 22-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 PP4_RS06250 5b132e943c1901682329766f58d1f30c 680 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 447 465 3.0E-53 T 22-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 PP4_RS06250 5b132e943c1901682329766f58d1f30c 680 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 531 551 3.0E-53 T 22-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 PP4_RS06250 5b132e943c1901682329766f58d1f30c 680 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 589 604 3.0E-53 T 22-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 PP4_RS06250 5b132e943c1901682329766f58d1f30c 680 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 473 497 3.0E-53 T 22-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 PP4_RS06250 5b132e943c1901682329766f58d1f30c 680 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 501 520 3.0E-53 T 22-04-2016 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 PP4_RS06250 5b132e943c1901682329766f58d1f30c 680 Pfam PF00326 Prolyl oligopeptidase family 463 678 1.6E-69 T 22-04-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 PP4_RS06250 5b132e943c1901682329766f58d1f30c 680 SUPERFAMILY SSF53474 417 656 1.28E-45 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS06250 5b132e943c1901682329766f58d1f30c 680 Gene3D G3DSA:2.130.10.120 66 408 2.3E-91 T 22-04-2016 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 PP4_RS06250 5b132e943c1901682329766f58d1f30c 680 Pfam PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain 7 404 8.2E-81 T 22-04-2016 IPR023302 Peptidase S9A, N-terminal domain GO:0004252|GO:0070008 PP4_RS06250 5b132e943c1901682329766f58d1f30c 680 PANTHER PTHR11757:SF3 11 680 3.4E-297 T 22-04-2016 PP4_RS08175 b1759296a617f8200b61bc97e0e62e31 976 PANTHER PTHR11986 543 972 7.8E-146 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS08175 b1759296a617f8200b61bc97e0e62e31 976 Pfam PF01636 Phosphotransferase enzyme family 50 284 1.0E-25 T 22-04-2016 IPR002575 Aminoglycoside phosphotransferase PP4_RS08175 b1759296a617f8200b61bc97e0e62e31 976 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 785 823 - T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS08175 b1759296a617f8200b61bc97e0e62e31 976 SUPERFAMILY SSF56112 25 335 6.46E-49 T 22-04-2016 IPR011009 Protein kinase-like domain PP4_RS08175 b1759296a617f8200b61bc97e0e62e31 976 Gene3D G3DSA:3.90.1200.10 131 337 6.3E-26 T 22-04-2016 PP4_RS08175 b1759296a617f8200b61bc97e0e62e31 976 Gene3D G3DSA:3.40.640.10 605 855 1.0E-63 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS08175 b1759296a617f8200b61bc97e0e62e31 976 Pfam PF00202 Aminotransferase class-III 574 972 3.1E-66 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS08175 b1759296a617f8200b61bc97e0e62e31 976 PANTHER PTHR11986:SF23 543 972 7.8E-146 T 22-04-2016 PP4_RS08175 b1759296a617f8200b61bc97e0e62e31 976 Gene3D G3DSA:3.30.200.20 38 111 3.2E-4 T 22-04-2016 PP4_RS08175 b1759296a617f8200b61bc97e0e62e31 976 Gene3D G3DSA:3.90.1150.10 856 973 5.9E-30 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS08175 b1759296a617f8200b61bc97e0e62e31 976 SUPERFAMILY SSF53383 560 973 1.57E-101 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS05655 059a0f81eacca16c8d4d6c315ea27303 431 PANTHER PTHR11662:SF285 2 413 2.1E-194 T 22-04-2016 PP4_RS05655 059a0f81eacca16c8d4d6c315ea27303 431 Gene3D G3DSA:1.20.1250.20 216 414 5.4E-27 T 22-04-2016 PP4_RS05655 059a0f81eacca16c8d4d6c315ea27303 431 Gene3D G3DSA:1.20.1250.20 6 198 1.0E-43 T 22-04-2016 PP4_RS05655 059a0f81eacca16c8d4d6c315ea27303 431 PANTHER PTHR11662 2 413 2.1E-194 T 22-04-2016 PP4_RS05655 059a0f81eacca16c8d4d6c315ea27303 431 SUPERFAMILY SSF103473 3 416 1.31E-81 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS05655 059a0f81eacca16c8d4d6c315ea27303 431 Pfam PF07690 Major Facilitator Superfamily 300 416 3.8E-10 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS05655 059a0f81eacca16c8d4d6c315ea27303 431 Pfam PF07690 Major Facilitator Superfamily 16 291 1.1E-45 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS19095 ef7b1683c73c5010f951cce2a0d9ad34 260 Gene3D G3DSA:3.40.225.10 31 238 5.7E-52 T 22-04-2016 IPR001303 Class II aldolase/adducin N-terminal PP4_RS19095 ef7b1683c73c5010f951cce2a0d9ad34 260 SMART SM01007 33 211 2.9E-43 T 22-04-2016 IPR001303 Class II aldolase/adducin N-terminal PP4_RS19095 ef7b1683c73c5010f951cce2a0d9ad34 260 PANTHER PTHR10672:SF17 22 247 3.1E-79 T 22-04-2016 PP4_RS19095 ef7b1683c73c5010f951cce2a0d9ad34 260 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 33 211 2.1E-37 T 22-04-2016 IPR001303 Class II aldolase/adducin N-terminal PP4_RS19095 ef7b1683c73c5010f951cce2a0d9ad34 260 PANTHER PTHR10672 22 247 3.1E-79 T 22-04-2016 PP4_RS19095 ef7b1683c73c5010f951cce2a0d9ad34 260 SUPERFAMILY SSF53639 27 242 1.82E-62 T 22-04-2016 IPR001303 Class II aldolase/adducin N-terminal PP4_RS10325 d916ce59d2413d9de279567d451831c7 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 16 29 3.89E-8 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS10325 d916ce59d2413d9de279567d451831c7 193 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 37 60 3.89E-8 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS10325 d916ce59d2413d9de279567d451831c7 193 Gene3D G3DSA:1.10.357.10 62 140 2.8E-10 T 22-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PP4_RS10325 d916ce59d2413d9de279567d451831c7 193 PANTHER PTHR30055 1 140 1.4E-19 T 22-04-2016 PP4_RS10325 d916ce59d2413d9de279567d451831c7 193 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 59 8.5E-17 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS10325 d916ce59d2413d9de279567d451831c7 193 ProSitePatterns PS01081 TetR-type HTH domain signature. 28 59 - T 22-04-2016 IPR023772 DNA-binding HTH domain, TetR-type, conserved site PP4_RS10325 d916ce59d2413d9de279567d451831c7 193 SUPERFAMILY SSF46689 18 78 2.79E-17 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS10325 d916ce59d2413d9de279567d451831c7 193 Gene3D G3DSA:1.10.10.60 18 61 5.7E-21 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS18905 d72a8121ae98fd8470ad9867977cb236 246 Gene3D G3DSA:3.30.950.10 118 241 6.4E-37 T 22-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 PP4_RS18905 d72a8121ae98fd8470ad9867977cb236 246 SUPERFAMILY SSF53790 2 237 1.44E-67 T 22-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 PP4_RS18905 d72a8121ae98fd8470ad9867977cb236 246 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 4 206 1.5E-44 T 22-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 PP4_RS18905 d72a8121ae98fd8470ad9867977cb236 246 PANTHER PTHR21091:SF16 1 235 6.6E-64 T 22-04-2016 PP4_RS18905 d72a8121ae98fd8470ad9867977cb236 246 ProSitePatterns PS00840 Uroporphyrin-III C-methyltransferase signature 2. 82 115 - T 22-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 PP4_RS18905 d72a8121ae98fd8470ad9867977cb236 246 Gene3D G3DSA:3.40.1010.10 2 117 2.6E-41 T 22-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 PP4_RS18905 d72a8121ae98fd8470ad9867977cb236 246 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 8 22 - T 22-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 PP4_RS18905 d72a8121ae98fd8470ad9867977cb236 246 TIGRFAM TIGR01469 cobA_cysG_Cterm: uroporphyrinogen-III C-methyltransferase 4 234 5.5E-89 T 22-04-2016 IPR006366 Uroporphyrin-III C-methyltransferase GO:0006779|GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 PP4_RS18905 d72a8121ae98fd8470ad9867977cb236 246 PANTHER PTHR21091 1 235 6.6E-64 T 22-04-2016 PP4_RS25940 06cda1bf05575f264f33c0497fe9bbed 178 PANTHER PTHR40278 1 161 1.7E-17 T 22-04-2016 PP4_RS25940 06cda1bf05575f264f33c0497fe9bbed 178 Pfam PF05137 Fimbrial assembly protein (PilN) 101 159 9.1E-11 T 22-04-2016 IPR007813 Fimbrial assembly PilN PP4_RS13235 454614db761a1ecaf6e555a3782dce5a 141 Gene3D G3DSA:1.10.287.70 43 135 9.6E-17 T 22-04-2016 PP4_RS13235 454614db761a1ecaf6e555a3782dce5a 141 SUPERFAMILY SSF81324 23 134 2.75E-20 T 22-04-2016 PP4_RS13235 454614db761a1ecaf6e555a3782dce5a 141 Pfam PF07885 Ion channel 53 131 2.4E-16 T 22-04-2016 IPR013099 Potassium channel domain PP4_RS16465 f36752ab67a87b7e509978a158a0f171 145 SUPERFAMILY SSF52304 4 144 6.41E-55 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PP4_RS16465 f36752ab67a87b7e509978a158a0f171 145 TIGRFAM TIGR01088 aroQ: 3-dehydroquinate dehydratase, type II 5 144 1.1E-54 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PP4_RS16465 f36752ab67a87b7e509978a158a0f171 145 PANTHER PTHR21272 1 145 2.5E-71 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PP4_RS16465 f36752ab67a87b7e509978a158a0f171 145 Hamap MF_00169 3-dehydroquinate dehydratase [aroQ]. 1 145 64.093 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PP4_RS16465 f36752ab67a87b7e509978a158a0f171 145 Gene3D G3DSA:3.40.50.9100 3 144 2.0E-57 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PP4_RS16465 f36752ab67a87b7e509978a158a0f171 145 PIRSF PIRSF001399 1 145 3.1E-56 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PP4_RS16465 f36752ab67a87b7e509978a158a0f171 145 ProDom PD004527 LYASE II 3-DEHYDROQUINATE BIOSYNTHESIS DEHYDRATASE TYPE 3-DEHYDROQUINASE DHQASE AMINO AROMATIC 5 134 1.0E-69 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PP4_RS16465 f36752ab67a87b7e509978a158a0f171 145 Pfam PF01220 Dehydroquinase class II 5 141 8.3E-53 T 22-04-2016 IPR001874 Dehydroquinase, class II GO:0003855 KEGG: 00400+4.2.1.10|MetaCyc: PWY-6163|MetaCyc: PWY-6416|MetaCyc: PWY-6707|UniPathway: UPA00053 PP4_RS15035 4f85f59822a3c4bbed7325b4f71dedca 325 Gene3D G3DSA:3.40.190.10 191 270 2.6E-14 T 22-04-2016 PP4_RS15035 4f85f59822a3c4bbed7325b4f71dedca 325 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 17 75 2.5E-15 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS15035 4f85f59822a3c4bbed7325b4f71dedca 325 Gene3D G3DSA:1.10.10.10 15 100 3.0E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS15035 4f85f59822a3c4bbed7325b4f71dedca 325 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 52 63 3.3E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS15035 4f85f59822a3c4bbed7325b4f71dedca 325 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 52 3.3E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS15035 4f85f59822a3c4bbed7325b4f71dedca 325 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 42 3.3E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS15035 4f85f59822a3c4bbed7325b4f71dedca 325 Pfam PF03466 LysR substrate binding domain 101 308 7.1E-36 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS15035 4f85f59822a3c4bbed7325b4f71dedca 325 Gene3D G3DSA:3.40.190.10 103 190 5.0E-13 T 22-04-2016 PP4_RS15035 4f85f59822a3c4bbed7325b4f71dedca 325 SUPERFAMILY SSF46785 13 95 1.33E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS15035 4f85f59822a3c4bbed7325b4f71dedca 325 PANTHER PTHR30126 14 323 5.2E-56 T 22-04-2016 PP4_RS15035 4f85f59822a3c4bbed7325b4f71dedca 325 SUPERFAMILY SSF53850 103 312 1.41E-38 T 22-04-2016 PP4_RS26890 cccd59725556d866df3adf30a019df5a 430 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 32 54 3.8E-5 T 22-04-2016 PP4_RS26890 cccd59725556d866df3adf30a019df5a 430 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 392 407 3.8E-5 T 22-04-2016 PP4_RS26890 cccd59725556d866df3adf30a019df5a 430 SUPERFAMILY SSF51905 31 255 9.32E-42 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS26890 cccd59725556d866df3adf30a019df5a 430 SUPERFAMILY SSF51905 347 411 9.32E-42 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS26890 cccd59725556d866df3adf30a019df5a 430 PANTHER PTHR13847:SF196 1 430 2.8E-148 T 22-04-2016 PP4_RS26890 cccd59725556d866df3adf30a019df5a 430 PANTHER PTHR13847 1 430 2.8E-148 T 22-04-2016 PP4_RS26890 cccd59725556d866df3adf30a019df5a 430 Pfam PF01266 FAD dependent oxidoreductase 32 384 1.5E-49 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PP4_RS26890 cccd59725556d866df3adf30a019df5a 430 Gene3D G3DSA:3.50.50.60 175 254 8.9E-49 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS26890 cccd59725556d866df3adf30a019df5a 430 Gene3D G3DSA:3.50.50.60 347 393 8.9E-49 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS26890 cccd59725556d866df3adf30a019df5a 430 Gene3D G3DSA:3.50.50.60 19 121 8.9E-49 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS03850 416e036391017a7b2c21a97c5c782502 233 SUPERFAMILY SSF48452 106 203 3.8E-13 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS03850 416e036391017a7b2c21a97c5c782502 233 Gene3D G3DSA:1.25.40.10 44 208 4.7E-15 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS03850 416e036391017a7b2c21a97c5c782502 233 SMART SM00028 103 136 3.5 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS03850 416e036391017a7b2c21a97c5c782502 233 SMART SM00028 137 170 1.2 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS03850 416e036391017a7b2c21a97c5c782502 233 Pfam PF14559 Tetratricopeptide repeat 115 170 1.9E-8 T 22-04-2016 PP4_RS26630 7f73b3852f6eed82cdde651a0e14a304 488 SUPERFAMILY SSF50475 3 322 1.14E-125 T 22-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 PP4_RS26630 7f73b3852f6eed82cdde651a0e14a304 488 TIGRFAM TIGR00148 TIGR00148: decarboxylase, UbiD family 6 455 7.3E-171 T 22-04-2016 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978|UniPathway: UPA00232 PP4_RS26630 7f73b3852f6eed82cdde651a0e14a304 488 SUPERFAMILY SSF143968 323 487 1.28E-66 T 22-04-2016 PP4_RS26630 7f73b3852f6eed82cdde651a0e14a304 488 Pfam PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 11 431 2.1E-172 T 22-04-2016 IPR002830 UbiD decarboxylyase family GO:0016831 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978|UniPathway: UPA00232 PP4_RS26630 7f73b3852f6eed82cdde651a0e14a304 488 Gene3D G3DSA:3.40.1670.10 337 453 3.2E-55 T 22-04-2016 PP4_RS26630 7f73b3852f6eed82cdde651a0e14a304 488 Gene3D G3DSA:1.20.5.570 455 487 5.6E-17 T 22-04-2016 PP4_RS26630 7f73b3852f6eed82cdde651a0e14a304 488 PANTHER PTHR30108 1 488 1.7E-268 T 22-04-2016 PP4_RS26630 7f73b3852f6eed82cdde651a0e14a304 488 Hamap MF_01636 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [ubiD]. 1 487 72.136 T 22-04-2016 IPR023677 UbiD decarboxylyase, bacteria GO:0005886|GO:0006744|GO:0008694 KEGG: 00130+4.1.1.98|MetaCyc: PWY-5855|MetaCyc: PWY-5856|MetaCyc: PWY-5857|MetaCyc: PWY-6708|MetaCyc: PWY-6978|UniPathway: UPA00232 PP4_RS26630 7f73b3852f6eed82cdde651a0e14a304 488 PANTHER PTHR30108:SF1 1 488 1.7E-268 T 22-04-2016 PP4_RS17815 f6ee192fcbd9cf22b08b7a50038f531b 261 PANTHER PTHR30269 1 261 2.0E-63 T 22-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 PP4_RS17815 f6ee192fcbd9cf22b08b7a50038f531b 261 Pfam PF01925 Sulfite exporter TauE/SafE 9 259 4.1E-49 T 22-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 PP4_RS17815 f6ee192fcbd9cf22b08b7a50038f531b 261 PANTHER PTHR30269:SF2 1 261 2.0E-63 T 22-04-2016 PP4_RS25920 d713f52a00daa49ecfeee3a1a8e8e9b8 365 PANTHER PTHR21090 1 359 1.5E-200 T 22-04-2016 PP4_RS25920 d713f52a00daa49ecfeee3a1a8e8e9b8 365 Pfam PF01761 3-dehydroquinate synthase 65 323 6.2E-108 T 22-04-2016 IPR030960 3-dehydroquinate synthase domain KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 PP4_RS25920 d713f52a00daa49ecfeee3a1a8e8e9b8 365 SUPERFAMILY SSF56796 4 354 8.24E-119 T 22-04-2016 PP4_RS25920 d713f52a00daa49ecfeee3a1a8e8e9b8 365 PIRSF PIRSF001455 4 361 9.3E-106 T 22-04-2016 IPR030963 3-dehydroquinate synthase family GO:0009073|GO:0016838 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 PP4_RS25920 d713f52a00daa49ecfeee3a1a8e8e9b8 365 TIGRFAM TIGR01357 aroB: 3-dehydroquinate synthase 13 350 1.8E-115 T 22-04-2016 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 PP4_RS25920 d713f52a00daa49ecfeee3a1a8e8e9b8 365 Gene3D G3DSA:3.40.50.1970 2 170 1.1E-68 T 22-04-2016 PP4_RS25920 d713f52a00daa49ecfeee3a1a8e8e9b8 365 Gene3D G3DSA:1.20.1090.10 171 354 6.2E-66 T 22-04-2016 PP4_RS25920 d713f52a00daa49ecfeee3a1a8e8e9b8 365 Hamap MF_00110 3-dehydroquinate synthase [aroB]. 2 356 42.92 T 22-04-2016 IPR016037 3-dehydroquinate synthase AroB GO:0003856|GO:0005737|GO:0009073 KEGG: 00400+4.2.3.4|MetaCyc: PWY-6164|UniPathway: UPA00053 PP4_RS25915 c4da6b034b19dabbe7aee13c1015f055 534 Gene3D G3DSA:3.40.50.300 63 153 6.6E-8 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25915 c4da6b034b19dabbe7aee13c1015f055 534 PANTHER PTHR35894 10 252 5.5E-15 T 22-04-2016 PP4_RS25915 c4da6b034b19dabbe7aee13c1015f055 534 PANTHER PTHR35894:SF1 10 252 5.5E-15 T 22-04-2016 PP4_RS25915 c4da6b034b19dabbe7aee13c1015f055 534 Gene3D G3DSA:3.40.50.300 51 62 1.7E-4 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25915 c4da6b034b19dabbe7aee13c1015f055 534 Gene3D G3DSA:3.40.50.300 158 201 1.7E-4 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25915 c4da6b034b19dabbe7aee13c1015f055 534 Pfam PF13401 AAA domain 49 167 3.0E-10 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS25915 c4da6b034b19dabbe7aee13c1015f055 534 Pfam PF05036 Sporulation related domain 448 520 9.4E-11 T 22-04-2016 IPR007730 Sporulation-related domain GO:0042834 PP4_RS25915 c4da6b034b19dabbe7aee13c1015f055 534 SUPERFAMILY SSF52540 19 246 1.77E-18 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS17125 181bbacda7184d793ceef121492f097e 171 PANTHER PTHR13833:SF51 24 171 3.2E-36 T 22-04-2016 PP4_RS17125 181bbacda7184d793ceef121492f097e 171 Gene3D G3DSA:3.40.30.10 29 169 7.5E-42 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS17125 181bbacda7184d793ceef121492f097e 171 SUPERFAMILY SSF52833 28 165 4.41E-33 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS17125 181bbacda7184d793ceef121492f097e 171 Pfam PF00578 AhpC/TSA family 49 148 8.9E-12 T 22-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 PP4_RS17125 181bbacda7184d793ceef121492f097e 171 PANTHER PTHR13833 24 171 3.2E-36 T 22-04-2016 PP4_RS07755 fa3be776e427fb2420ef0f33ce469e64 202 TIGRFAM TIGR00781 ccoO: cytochrome c oxidase, cbb3-type, subunit II 3 178 4.6E-87 T 22-04-2016 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO PP4_RS07755 fa3be776e427fb2420ef0f33ce469e64 202 PANTHER PTHR10422:SF23 22 159 3.3E-88 T 22-04-2016 PP4_RS07755 fa3be776e427fb2420ef0f33ce469e64 202 Pfam PF02433 Cytochrome C oxidase, mono-heme subunit/FixO 3 179 3.8E-83 T 22-04-2016 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO PP4_RS07755 fa3be776e427fb2420ef0f33ce469e64 202 Gene3D G3DSA:1.10.760.10 15 195 9.3E-38 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS07755 fa3be776e427fb2420ef0f33ce469e64 202 PANTHER PTHR10422 22 159 3.3E-88 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS07755 fa3be776e427fb2420ef0f33ce469e64 202 SUPERFAMILY SSF46626 13 192 3.58E-29 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS20600 13577f9b4d54178f5bcc2186cd8ac508 183 PRINTS PR01011 Glutathione peroxidase family signature 82 98 3.9E-9 T 22-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 PP4_RS20600 13577f9b4d54178f5bcc2186cd8ac508 183 PRINTS PR01011 Glutathione peroxidase family signature 141 150 3.9E-9 T 22-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 PP4_RS20600 13577f9b4d54178f5bcc2186cd8ac508 183 PRINTS PR01011 Glutathione peroxidase family signature 47 64 3.9E-9 T 22-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 PP4_RS20600 13577f9b4d54178f5bcc2186cd8ac508 183 PIRSF PIRSF000303 2 183 1.3E-52 T 22-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 PP4_RS20600 13577f9b4d54178f5bcc2186cd8ac508 183 PANTHER PTHR11592:SF31 10 182 4.2E-75 T 22-04-2016 PP4_RS20600 13577f9b4d54178f5bcc2186cd8ac508 183 PANTHER PTHR11592 10 182 4.2E-75 T 22-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 PP4_RS20600 13577f9b4d54178f5bcc2186cd8ac508 183 Gene3D G3DSA:3.40.30.10 39 180 6.1E-41 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS20600 13577f9b4d54178f5bcc2186cd8ac508 183 Pfam PF00255 Glutathione peroxidase 42 134 1.9E-19 T 22-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 PP4_RS20600 13577f9b4d54178f5bcc2186cd8ac508 183 SUPERFAMILY SSF52833 37 179 1.36E-38 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS20600 13577f9b4d54178f5bcc2186cd8ac508 183 ProSitePatterns PS00460 Glutathione peroxidases active site. 49 64 - T 22-04-2016 IPR029759 Glutathione peroxidase active site PP4_RS07090 c4ec03acae1db8de50f3ba2285585c4a 462 Pfam PF07195 Flagellar hook-associated protein 2 C-terminus 212 442 6.4E-46 T 22-04-2016 IPR010809 Flagellar hook-associated 2, C-terminal GO:0007155|GO:0009288 PP4_RS07090 c4ec03acae1db8de50f3ba2285585c4a 462 Pfam PF02465 Flagellar hook-associated protein 2 N-terminus 11 107 3.3E-18 T 22-04-2016 IPR003481 Flagellar hook-associated protein 2, N-terminal GO:0009424 PP4_RS07090 c4ec03acae1db8de50f3ba2285585c4a 462 PANTHER PTHR30288 2 458 1.1E-48 T 22-04-2016 PP4_RS07090 c4ec03acae1db8de50f3ba2285585c4a 462 Pfam PF07196 Flagellin hook IN motif 131 186 1.2E-11 T 22-04-2016 IPR010810 Flagellin hook, IN motif GO:0006928|GO:0009288|GO:0044781 PP4_RS07090 c4ec03acae1db8de50f3ba2285585c4a 462 PANTHER PTHR30288:SF0 2 458 1.1E-48 T 22-04-2016 PP4_RS13910 9b67d06fe844517061948bda70a3c629 431 Pfam PF01266 FAD dependent oxidoreductase 29 380 2.6E-49 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PP4_RS13910 9b67d06fe844517061948bda70a3c629 431 PANTHER PTHR13847 4 424 2.8E-80 T 22-04-2016 PP4_RS13910 9b67d06fe844517061948bda70a3c629 431 PANTHER PTHR13847:SF196 4 424 2.8E-80 T 22-04-2016 PP4_RS13910 9b67d06fe844517061948bda70a3c629 431 SUPERFAMILY SSF51905 28 252 7.12E-41 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS13910 9b67d06fe844517061948bda70a3c629 431 SUPERFAMILY SSF51905 344 396 7.12E-41 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS13910 9b67d06fe844517061948bda70a3c629 431 Gene3D G3DSA:3.50.50.60 344 395 2.1E-44 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS13910 9b67d06fe844517061948bda70a3c629 431 Gene3D G3DSA:3.50.50.60 171 251 2.1E-44 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS13910 9b67d06fe844517061948bda70a3c629 431 Gene3D G3DSA:3.50.50.60 17 118 2.1E-44 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS20545 dbf0c10040fb76041dadc3e1d2ae8094 392 SUPERFAMILY SSF103473 10 387 1.83E-44 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS20545 dbf0c10040fb76041dadc3e1d2ae8094 392 Pfam PF07690 Major Facilitator Superfamily 15 355 9.3E-29 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS20545 dbf0c10040fb76041dadc3e1d2ae8094 392 PANTHER PTHR23546:SF1 11 385 3.7E-43 T 22-04-2016 PP4_RS20545 dbf0c10040fb76041dadc3e1d2ae8094 392 Gene3D G3DSA:1.20.1250.20 11 188 3.2E-20 T 22-04-2016 PP4_RS20545 dbf0c10040fb76041dadc3e1d2ae8094 392 Gene3D G3DSA:1.20.1250.20 210 387 1.8E-14 T 22-04-2016 PP4_RS20545 dbf0c10040fb76041dadc3e1d2ae8094 392 PANTHER PTHR23546 11 385 3.7E-43 T 22-04-2016 PP4_RS15270 43ecfb8723372b975322208c3f0fe8e3 154 PANTHER PTHR35585 1 151 1.6E-31 T 22-04-2016 PP4_RS15270 43ecfb8723372b975322208c3f0fe8e3 154 Gene3D G3DSA:1.20.120.520 4 145 2.5E-14 T 22-04-2016 PP4_RS15270 43ecfb8723372b975322208c3f0fe8e3 154 Pfam PF01814 Hemerythrin HHE cation binding domain 3 124 5.0E-16 T 22-04-2016 IPR012312 Haemerythrin-like PP4_RS04865 f675b5619fafa9fd78a4342bd94b1bd5 336 Pfam PF16263 Domain of unknown function (DUF4917) 23 319 2.2E-39 T 22-04-2016 IPR032581 Protein of unknown function DUF4917 PP4_RS17025 88ea360d52d776e8c717b642fea6b83c 388 PANTHER PTHR40407 12 388 1.2E-89 T 22-04-2016 PP4_RS17025 88ea360d52d776e8c717b642fea6b83c 388 Pfam PF07786 Protein of unknown function (DUF1624) 14 224 7.1E-16 T 22-04-2016 IPR012429 Protein of unknown function DUF1624 KEGG: 00531+2.3.1.78 PP4_RS25155 980bb260cbe5fd69195639823787be5a 423 PANTHER PTHR23417 192 422 1.6E-127 T 22-04-2016 PP4_RS25155 980bb260cbe5fd69195639823787be5a 423 PANTHER PTHR23417 1 113 1.6E-127 T 22-04-2016 PP4_RS25155 980bb260cbe5fd69195639823787be5a 423 PANTHER PTHR23417 132 142 1.6E-127 T 22-04-2016 PP4_RS25155 980bb260cbe5fd69195639823787be5a 423 SUPERFAMILY SSF53756 57 419 6.73E-16 T 22-04-2016 PP4_RS25155 980bb260cbe5fd69195639823787be5a 423 Pfam PF00534 Glycosyl transferases group 1 239 402 1.2E-8 T 22-04-2016 IPR001296 Glycosyl transferase, family 1 PP4_RS25155 980bb260cbe5fd69195639823787be5a 423 PANTHER PTHR23417:SF2 192 422 1.6E-127 T 22-04-2016 PP4_RS25155 980bb260cbe5fd69195639823787be5a 423 PANTHER PTHR23417:SF2 1 113 1.6E-127 T 22-04-2016 PP4_RS25155 980bb260cbe5fd69195639823787be5a 423 PANTHER PTHR23417:SF2 132 142 1.6E-127 T 22-04-2016 PP4_RS25155 980bb260cbe5fd69195639823787be5a 423 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 34 212 1.9E-68 T 22-04-2016 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675|UniPathway: UPA00958 PP4_RS11220 eab074a64be03b402d0c97ecefd14a61 270 PANTHER PTHR10108:SF889 13 153 1.5E-43 T 22-04-2016 PP4_RS11220 eab074a64be03b402d0c97ecefd14a61 270 PANTHER PTHR10108 13 153 1.5E-43 T 22-04-2016 PP4_RS11220 eab074a64be03b402d0c97ecefd14a61 270 Gene3D G3DSA:3.40.50.150 33 202 5.2E-37 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS11220 eab074a64be03b402d0c97ecefd14a61 270 SUPERFAMILY SSF53335 24 242 3.41E-38 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS11220 eab074a64be03b402d0c97ecefd14a61 270 Pfam PF08241 Methyltransferase domain 50 143 3.1E-22 T 22-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 PP4_RS14235 f0ada0acca6d79f62e397f08a46a3e87 339 Gene3D G3DSA:3.40.50.2300 71 179 4.7E-32 T 22-04-2016 PP4_RS14235 f0ada0acca6d79f62e397f08a46a3e87 339 Gene3D G3DSA:1.10.260.40 12 70 1.2E-17 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS14235 f0ada0acca6d79f62e397f08a46a3e87 339 Pfam PF00356 Bacterial regulatory proteins, lacI family 13 58 8.0E-12 T 22-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PP4_RS14235 f0ada0acca6d79f62e397f08a46a3e87 339 Gene3D G3DSA:3.40.50.2300 180 338 2.8E-46 T 22-04-2016 PP4_RS14235 f0ada0acca6d79f62e397f08a46a3e87 339 PANTHER PTHR30146:SF2 11 339 6.1E-139 T 22-04-2016 PP4_RS14235 f0ada0acca6d79f62e397f08a46a3e87 339 SUPERFAMILY SSF47413 11 69 1.27E-13 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS14235 f0ada0acca6d79f62e397f08a46a3e87 339 Pfam PF13377 Periplasmic binding protein-like domain 178 339 1.5E-30 T 22-04-2016 PP4_RS14235 f0ada0acca6d79f62e397f08a46a3e87 339 PANTHER PTHR30146 11 339 6.1E-139 T 22-04-2016 PP4_RS14235 f0ada0acca6d79f62e397f08a46a3e87 339 SUPERFAMILY SSF53822 70 336 2.36E-55 T 22-04-2016 IPR028082 Periplasmic binding protein-like I PP4_RS14235 f0ada0acca6d79f62e397f08a46a3e87 339 SMART SM00354 11 81 8.4E-19 T 22-04-2016 IPR000843 Transcription regulator HTH, LacI GO:0003700|GO:0006355 PP4_RS07605 7555b4b54ef126e563aa5cb2edc54cc3 484 Gene3D G3DSA:1.10.150.120 87 188 5.9E-37 T 22-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 PP4_RS07605 7555b4b54ef126e563aa5cb2edc54cc3 484 TIGRFAM TIGR02963 xanthine_xdhA: xanthine dehydrogenase, small subunit 2 471 8.0E-216 T 22-04-2016 IPR014307 Xanthine dehydrogenase, small subunit GO:0004854|GO:0004855|GO:0050660|GO:0055114 KEGG: 00230+1.17.1.4|MetaCyc: PWY-5497|MetaCyc: PWY-5695|MetaCyc: PWY-6538|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-6999 PP4_RS07605 7555b4b54ef126e563aa5cb2edc54cc3 484 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 17 76 4.6E-6 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS07605 7555b4b54ef126e563aa5cb2edc54cc3 484 Gene3D G3DSA:3.10.20.30 2 85 4.4E-26 T 22-04-2016 IPR012675 Beta-grasp domain PP4_RS07605 7555b4b54ef126e563aa5cb2edc54cc3 484 Gene3D G3DSA:3.30.390.50 371 470 1.2E-39 T 22-04-2016 PP4_RS07605 7555b4b54ef126e563aa5cb2edc54cc3 484 SMART SM01092 370 471 2.9E-37 T 22-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal PP4_RS07605 7555b4b54ef126e563aa5cb2edc54cc3 484 SUPERFAMILY SSF54292 2 90 6.29E-18 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS07605 7555b4b54ef126e563aa5cb2edc54cc3 484 Pfam PF01799 [2Fe-2S] binding domain 87 158 9.5E-30 T 22-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 PP4_RS07605 7555b4b54ef126e563aa5cb2edc54cc3 484 SUPERFAMILY SSF56176 184 361 1.82E-53 T 22-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 PP4_RS07605 7555b4b54ef126e563aa5cb2edc54cc3 484 SUPERFAMILY SSF55447 367 472 3.27E-36 T 22-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal PP4_RS07605 7555b4b54ef126e563aa5cb2edc54cc3 484 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 199 362 3.0E-52 T 22-04-2016 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 PP4_RS07605 7555b4b54ef126e563aa5cb2edc54cc3 484 PIRSF PIRSF036557 1 484 2.5E-211 T 22-04-2016 IPR012175 Xanthine dehydrogenase, small subunit, bacteria PP4_RS07605 7555b4b54ef126e563aa5cb2edc54cc3 484 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 370 470 1.1E-33 T 22-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal PP4_RS07605 7555b4b54ef126e563aa5cb2edc54cc3 484 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 39 47 - T 22-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 PP4_RS07605 7555b4b54ef126e563aa5cb2edc54cc3 484 SUPERFAMILY SSF47741 97 202 4.32E-34 T 22-04-2016 IPR002888 [2Fe-2S]-binding GO:0016491|GO:0046872|GO:0055114 PP4_RS07605 7555b4b54ef126e563aa5cb2edc54cc3 484 Gene3D G3DSA:3.30.43.10 201 248 6.0E-23 T 22-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 PP4_RS07605 7555b4b54ef126e563aa5cb2edc54cc3 484 PANTHER PTHR11908 1 470 4.7E-144 T 22-04-2016 PP4_RS07605 7555b4b54ef126e563aa5cb2edc54cc3 484 Gene3D G3DSA:3.30.465.10 249 362 9.2E-36 T 22-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 PP4_RS06605 cb0b7b1f17e6c13aad3a3d7195aaeda1 389 SUPERFAMILY SSF103473 7 375 9.81E-23 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS06605 cb0b7b1f17e6c13aad3a3d7195aaeda1 389 PANTHER PTHR23537 2 384 6.4E-73 T 22-04-2016 PP4_RS06605 cb0b7b1f17e6c13aad3a3d7195aaeda1 389 Pfam PF06779 Uncharacterised MFS-type transporter YbfB 14 372 1.4E-122 T 22-04-2016 IPR010645 Uncharacterised MFS-type transporter YbfB PP4_RS06605 cb0b7b1f17e6c13aad3a3d7195aaeda1 389 Gene3D G3DSA:1.20.1250.20 206 377 3.4E-4 T 22-04-2016 PP4_RS06605 cb0b7b1f17e6c13aad3a3d7195aaeda1 389 PANTHER PTHR23537:SF1 2 384 6.4E-73 T 22-04-2016 PP4_RS06605 cb0b7b1f17e6c13aad3a3d7195aaeda1 389 Gene3D G3DSA:1.20.1250.20 8 186 3.4E-8 T 22-04-2016 PP4_RS11570 8c2b849ad50ffde3d4f9646eb8d3643c 210 Gene3D G3DSA:1.10.10.10 146 202 1.8E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS11570 8c2b849ad50ffde3d4f9646eb8d3643c 210 ProSitePatterns PS00622 LuxR-type HTH domain signature. 156 183 - T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS11570 8c2b849ad50ffde3d4f9646eb8d3643c 210 SMART SM00448 4 115 1.2E-26 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS11570 8c2b849ad50ffde3d4f9646eb8d3643c 210 PANTHER PTHR26402:SF546 4 197 2.3E-93 T 22-04-2016 PP4_RS11570 8c2b849ad50ffde3d4f9646eb8d3643c 210 Pfam PF00072 Response regulator receiver domain 6 115 1.4E-22 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS11570 8c2b849ad50ffde3d4f9646eb8d3643c 210 SUPERFAMILY SSF46894 132 202 1.33E-20 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS11570 8c2b849ad50ffde3d4f9646eb8d3643c 210 Gene3D G3DSA:3.40.50.2300 4 145 1.6E-32 T 22-04-2016 PP4_RS11570 8c2b849ad50ffde3d4f9646eb8d3643c 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 142 156 8.7E-12 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS11570 8c2b849ad50ffde3d4f9646eb8d3643c 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 172 184 8.7E-12 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS11570 8c2b849ad50ffde3d4f9646eb8d3643c 210 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 156 172 8.7E-12 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS11570 8c2b849ad50ffde3d4f9646eb8d3643c 210 Pfam PF00196 Bacterial regulatory proteins, luxR family 141 196 3.5E-18 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS11570 8c2b849ad50ffde3d4f9646eb8d3643c 210 SUPERFAMILY SSF52172 4 151 3.13E-33 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS11570 8c2b849ad50ffde3d4f9646eb8d3643c 210 SMART SM00421 139 196 2.9E-20 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS11570 8c2b849ad50ffde3d4f9646eb8d3643c 210 PANTHER PTHR26402 4 197 2.3E-93 T 22-04-2016 PP4_RS11370 b4ee908de243892a32856e4182421ae9 166 PANTHER PTHR10681 3 166 5.2E-51 T 22-04-2016 PP4_RS11370 b4ee908de243892a32856e4182421ae9 166 Pfam PF08534 Redoxin 20 162 3.8E-26 T 22-04-2016 IPR013740 Redoxin GO:0016491 PP4_RS11370 b4ee908de243892a32856e4182421ae9 166 ProSitePatterns PS01265 Tpx family signature. 83 94 - T 22-04-2016 IPR018219 Thiol peroxidase conserved site GO:0016684|GO:0055114 PP4_RS11370 b4ee908de243892a32856e4182421ae9 166 Gene3D G3DSA:3.40.30.10 2 166 2.6E-46 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS11370 b4ee908de243892a32856e4182421ae9 166 SUPERFAMILY SSF52833 1 163 4.27E-42 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS11370 b4ee908de243892a32856e4182421ae9 166 Hamap MF_00269 Probable thiol peroxidase [tpx]. 3 166 39.406 T 22-04-2016 IPR002065 Putative thiol peroxidase Tpx GO:0008379|GO:0016209|GO:0055114 PP4_RS11370 b4ee908de243892a32856e4182421ae9 166 PANTHER PTHR10681:SF81 3 166 5.2E-51 T 22-04-2016 PP4_RS11430 ac86d0380945364c508a8b69f035f651 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 43 4.1E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS11430 ac86d0380945364c508a8b69f035f651 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 53 64 4.1E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS11430 ac86d0380945364c508a8b69f035f651 309 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 53 4.1E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS11430 ac86d0380945364c508a8b69f035f651 309 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 17 76 2.7E-17 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS11430 ac86d0380945364c508a8b69f035f651 309 Pfam PF03466 LysR substrate binding domain 102 301 2.9E-38 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS11430 ac86d0380945364c508a8b69f035f651 309 Gene3D G3DSA:3.40.190.10 186 272 1.6E-19 T 22-04-2016 PP4_RS11430 ac86d0380945364c508a8b69f035f651 309 Gene3D G3DSA:1.10.10.10 15 91 2.9E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS11430 ac86d0380945364c508a8b69f035f651 309 SUPERFAMILY SSF46785 11 123 1.8E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS11430 ac86d0380945364c508a8b69f035f651 309 PANTHER PTHR30427 13 303 2.1E-66 T 22-04-2016 PP4_RS11430 ac86d0380945364c508a8b69f035f651 309 SUPERFAMILY SSF53850 105 306 6.7E-39 T 22-04-2016 PP4_RS11430 ac86d0380945364c508a8b69f035f651 309 Gene3D G3DSA:3.40.190.10 104 185 3.2E-17 T 22-04-2016 PP4_RS00820 3b5dd0334d1cbbe89eb367d1ab6c81d7 167 SUPERFAMILY SSF88659 101 159 3.92E-13 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS00820 3b5dd0334d1cbbe89eb367d1ab6c81d7 167 PANTHER PTHR30173 4 158 6.6E-41 T 22-04-2016 PP4_RS00820 3b5dd0334d1cbbe89eb367d1ab6c81d7 167 PANTHER PTHR30173:SF9 4 158 6.6E-41 T 22-04-2016 PP4_RS00820 3b5dd0334d1cbbe89eb367d1ab6c81d7 167 Pfam PF08281 Sigma-70, region 4 106 155 2.5E-14 T 22-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS00820 3b5dd0334d1cbbe89eb367d1ab6c81d7 167 SUPERFAMILY SSF88946 4 72 9.81E-15 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS00820 3b5dd0334d1cbbe89eb367d1ab6c81d7 167 Gene3D G3DSA:1.10.1740.10 4 75 1.0E-13 T 22-04-2016 PP4_RS00820 3b5dd0334d1cbbe89eb367d1ab6c81d7 167 Gene3D G3DSA:1.10.10.10 103 155 3.1E-13 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS00820 3b5dd0334d1cbbe89eb367d1ab6c81d7 167 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 7 155 1.2E-21 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS00820 3b5dd0334d1cbbe89eb367d1ab6c81d7 167 Pfam PF04542 Sigma-70 region 2 10 74 5.0E-15 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS15850 9a649001fc186378a1ba4637ca733c33 240 Gene3D G3DSA:3.60.20.10 2 222 2.0E-13 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PP4_RS15850 9a649001fc186378a1ba4637ca733c33 240 SUPERFAMILY SSF56235 2 237 5.56E-31 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PP4_RS15850 9a649001fc186378a1ba4637ca733c33 240 PIRSF PIRSF009120 1 240 8.9E-103 T 22-04-2016 IPR016545 Uncharacterised conserved protein UCP009120, proteasome-type protease, Sll0069 PP4_RS07680 dc97d888082ffd05277d938c885e52be 200 ProSitePatterns PS01300 RecR protein signature. 57 78 - T 22-04-2016 IPR015967 Recombination protein RecR, conserved site GO:0006281|GO:0006310 PP4_RS07680 dc97d888082ffd05277d938c885e52be 200 Pfam PF13662 Toprim domain 81 171 1.6E-23 T 22-04-2016 IPR006171 Toprim domain PP4_RS07680 dc97d888082ffd05277d938c885e52be 200 Hamap MF_00017 Recombination protein RecR [recR]. 1 198 100.001 T 22-04-2016 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 PP4_RS07680 dc97d888082ffd05277d938c885e52be 200 TIGRFAM TIGR00615 recR: recombination protein RecR 2 196 2.4E-73 T 22-04-2016 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 PP4_RS07680 dc97d888082ffd05277d938c885e52be 200 SMART SM00493 80 165 1.1E-15 T 22-04-2016 IPR006171 Toprim domain PP4_RS07680 dc97d888082ffd05277d938c885e52be 200 Pfam PF02132 RecR protein 41 78 2.6E-16 T 22-04-2016 IPR023628 Recombination protein RecR, C4-type zinc finger PP4_RS07680 dc97d888082ffd05277d938c885e52be 200 PANTHER PTHR30446:SF0 1 200 9.4E-110 T 22-04-2016 PP4_RS07680 dc97d888082ffd05277d938c885e52be 200 PANTHER PTHR30446 1 200 9.4E-110 T 22-04-2016 PP4_RS07680 dc97d888082ffd05277d938c885e52be 200 SUPERFAMILY SSF111304 3 198 2.75E-69 T 22-04-2016 IPR023627 Recombination protein RecR PP4_RS04575 3aab234cad3bbedbdf505b6676b92a93 295 SUPERFAMILY SSF56645 23 164 3.14E-11 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 PP4_RS04575 3aab234cad3bbedbdf505b6676b92a93 295 Gene3D G3DSA:2.40.110.10 91 163 1.1E-6 T 22-04-2016 PP4_RS03610 4f2445ab4f3ea683cc715c9a018204a7 406 Gene3D G3DSA:1.20.1250.20 12 192 6.2E-19 T 22-04-2016 PP4_RS03610 4f2445ab4f3ea683cc715c9a018204a7 406 Gene3D G3DSA:1.20.1250.20 229 398 2.6E-9 T 22-04-2016 PP4_RS03610 4f2445ab4f3ea683cc715c9a018204a7 406 PANTHER PTHR23513:SF9 9 405 2.2E-135 T 22-04-2016 PP4_RS03610 4f2445ab4f3ea683cc715c9a018204a7 406 SUPERFAMILY SSF103473 11 401 3.53E-39 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS03610 4f2445ab4f3ea683cc715c9a018204a7 406 Pfam PF05977 Transmembrane secretion effector 13 391 6.5E-33 T 22-04-2016 IPR010290 Transmembrane secretion effector PP4_RS03610 4f2445ab4f3ea683cc715c9a018204a7 406 PANTHER PTHR23513 9 405 2.2E-135 T 22-04-2016 PP4_RS04390 f5281f6324e03feacbbbd015e6598b05 305 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 176 291 1.1E-31 T 22-04-2016 IPR013752 Ketopantoate reductase, C-terminal domain GO:0016491|GO:0050661|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 PP4_RS04390 f5281f6324e03feacbbbd015e6598b05 305 Gene3D G3DSA:1.10.1040.10 185 291 5.3E-35 T 22-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PP4_RS04390 f5281f6324e03feacbbbd015e6598b05 305 Pfam PF02558 Ketopantoate reductase PanE/ApbA 5 152 2.2E-34 T 22-04-2016 IPR013332 Ketopantoate reductase, N-terminal domain GO:0008677|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 PP4_RS04390 f5281f6324e03feacbbbd015e6598b05 305 SUPERFAMILY SSF48179 176 293 2.52E-30 T 22-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PP4_RS04390 f5281f6324e03feacbbbd015e6598b05 305 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 4 293 4.7E-74 T 22-04-2016 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0015940|GO:0016491|GO:0055114 KEGG: 00052+1.1.1.16|KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654|UniPathway: UPA00028 PP4_RS04390 f5281f6324e03feacbbbd015e6598b05 305 PANTHER PTHR21708:SF24 1 293 4.5E-68 T 22-04-2016 PP4_RS04390 f5281f6324e03feacbbbd015e6598b05 305 PANTHER PTHR21708 1 293 4.5E-68 T 22-04-2016 PP4_RS04390 f5281f6324e03feacbbbd015e6598b05 305 Gene3D G3DSA:3.40.50.720 4 184 3.0E-44 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS04390 f5281f6324e03feacbbbd015e6598b05 305 SUPERFAMILY SSF51735 4 165 3.25E-31 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS25835 45c394a40c9c606a2e007cb3dd90fd31 490 Pfam PF00171 Aldehyde dehydrogenase family 17 479 8.5E-181 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PP4_RS25835 45c394a40c9c606a2e007cb3dd90fd31 490 Hamap MF_00804 NAD/NADP-dependent betaine aldehyde dehydrogenase [betB]. 4 490 60.451 T 22-04-2016 IPR011264 Betaine aldehyde dehydrogenase GO:0008802|GO:0019285|GO:0046872 KEGG: 00260+1.2.1.8|MetaCyc: PWY-3722|MetaCyc: PWY-7494|UniPathway: UPA00529 PP4_RS25835 45c394a40c9c606a2e007cb3dd90fd31 490 TIGRFAM TIGR01804 BADH: betaine-aldehyde dehydrogenase 10 477 7.0E-229 T 22-04-2016 IPR011264 Betaine aldehyde dehydrogenase GO:0008802|GO:0019285|GO:0046872 KEGG: 00260+1.2.1.8|MetaCyc: PWY-3722|MetaCyc: PWY-7494|UniPathway: UPA00529 PP4_RS25835 45c394a40c9c606a2e007cb3dd90fd31 490 PANTHER PTHR11699 1 484 0.0 T 22-04-2016 PP4_RS25835 45c394a40c9c606a2e007cb3dd90fd31 490 Gene3D G3DSA:3.40.605.10 7 265 1.2E-104 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS25835 45c394a40c9c606a2e007cb3dd90fd31 490 PANTHER PTHR11699:SF115 1 484 0.0 T 22-04-2016 PP4_RS25835 45c394a40c9c606a2e007cb3dd90fd31 490 Gene3D G3DSA:3.40.309.10 266 443 1.9E-71 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PP4_RS25835 45c394a40c9c606a2e007cb3dd90fd31 490 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 251 258 - T 22-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 PP4_RS25835 45c394a40c9c606a2e007cb3dd90fd31 490 SUPERFAMILY SSF53720 6 482 3.67E-172 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS25835 45c394a40c9c606a2e007cb3dd90fd31 490 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 279 290 - T 22-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 PP4_RS25545 024e92a3b443bb2b36820256fb84580a 447 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 3 447 7.0E-210 T 22-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 PP4_RS25545 024e92a3b443bb2b36820256fb84580a 447 Gene3D G3DSA:1.10.8.60 335 447 3.5E-29 T 22-04-2016 PP4_RS25545 024e92a3b443bb2b36820256fb84580a 447 PANTHER PTHR11262:SF3 3 104 6.9E-204 T 22-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 PP4_RS25545 024e92a3b443bb2b36820256fb84580a 447 PANTHER PTHR11262:SF3 218 447 6.9E-204 T 22-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 PP4_RS25545 024e92a3b443bb2b36820256fb84580a 447 Pfam PF07724 AAA domain (Cdc48 subfamily) 180 329 4.5E-39 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 PP4_RS25545 024e92a3b443bb2b36820256fb84580a 447 SUPERFAMILY SSF52540 3 445 2.17E-85 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25545 024e92a3b443bb2b36820256fb84580a 447 Gene3D G3DSA:1.10.8.10 110 178 5.1E-29 T 22-04-2016 PP4_RS25545 024e92a3b443bb2b36820256fb84580a 447 Gene3D G3DSA:1.10.8.10 213 243 5.1E-29 T 22-04-2016 PP4_RS25545 024e92a3b443bb2b36820256fb84580a 447 SMART SM00382 48 332 2.1E-11 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS25545 024e92a3b443bb2b36820256fb84580a 447 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 1 447 41.747 T 22-04-2016 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 PP4_RS25545 024e92a3b443bb2b36820256fb84580a 447 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 52 140 1.1E-7 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 PP4_RS25545 024e92a3b443bb2b36820256fb84580a 447 PANTHER PTHR11262 3 104 6.9E-204 T 22-04-2016 PP4_RS25545 024e92a3b443bb2b36820256fb84580a 447 PANTHER PTHR11262 218 447 6.9E-204 T 22-04-2016 PP4_RS25545 024e92a3b443bb2b36820256fb84580a 447 SMART SM01086 335 433 1.1E-15 T 22-04-2016 IPR019489 Clp ATPase, C-terminal PP4_RS25545 024e92a3b443bb2b36820256fb84580a 447 Gene3D G3DSA:3.40.50.300 3 109 1.1E-51 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25545 024e92a3b443bb2b36820256fb84580a 447 Gene3D G3DSA:3.40.50.300 245 331 1.1E-51 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS04210 64da11272887b119863afedf2e05757c 142 PIRSF PIRSF002181 1 142 3.0E-53 T 22-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 PP4_RS04210 64da11272887b119863afedf2e05757c 142 SUPERFAMILY SSF52161 1 139 9.68E-61 T 22-04-2016 IPR023564 Ribosomal protein L13 domain GO:0003735|GO:0005840|GO:0006412 PP4_RS04210 64da11272887b119863afedf2e05757c 142 PANTHER PTHR11545 1 142 4.4E-77 T 22-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 PP4_RS04210 64da11272887b119863afedf2e05757c 142 Gene3D G3DSA:3.90.1180.10 3 141 7.5E-66 T 22-04-2016 IPR023564 Ribosomal protein L13 domain GO:0003735|GO:0005840|GO:0006412 PP4_RS04210 64da11272887b119863afedf2e05757c 142 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 15 141 29.669 T 22-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 PP4_RS04210 64da11272887b119863afedf2e05757c 142 Pfam PF00572 Ribosomal protein L13 14 138 1.6E-58 T 22-04-2016 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 PP4_RS04210 64da11272887b119863afedf2e05757c 142 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 4 141 1.7E-65 T 22-04-2016 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 PP4_RS04210 64da11272887b119863afedf2e05757c 142 ProSitePatterns PS00783 Ribosomal protein L13 signature. 105 127 - T 22-04-2016 IPR023563 Ribosomal protein L13, conserved site GO:0003735|GO:0005840|GO:0006412 PP4_RS00865 e2e81cc45df559946691e34462e95be7 339 PANTHER PTHR30024 7 334 3.8E-157 T 22-04-2016 PP4_RS00865 e2e81cc45df559946691e34462e95be7 339 Gene3D G3DSA:3.40.190.10 57 159 5.0E-4 T 22-04-2016 PP4_RS00865 e2e81cc45df559946691e34462e95be7 339 Pfam PF13379 NMT1-like family 32 272 1.5E-25 T 22-04-2016 PP4_RS00865 e2e81cc45df559946691e34462e95be7 339 SUPERFAMILY SSF53850 43 290 7.97E-32 T 22-04-2016 PP4_RS00865 e2e81cc45df559946691e34462e95be7 339 PANTHER PTHR30024:SF2 7 334 3.8E-157 T 22-04-2016 PP4_RS15940 3b6d959cbcd154b98a00d2d9491e4748 397 SUPERFAMILY SSF53822 52 362 1.95E-21 T 22-04-2016 IPR028082 Periplasmic binding protein-like I PP4_RS15940 3b6d959cbcd154b98a00d2d9491e4748 397 Gene3D G3DSA:3.40.50.2300 55 219 1.5E-7 T 22-04-2016 PP4_RS15940 3b6d959cbcd154b98a00d2d9491e4748 397 TIGRFAM TIGR03863 PQQ_ABC_bind: ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system 52 394 2.2E-148 T 22-04-2016 IPR022478 ABC transporter, substrate-binding protein, PQQ-dependent alcohol dehydrogenase system PP4_RS25305 631b4e90d550d71b12533cc28d61c4bd 245 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 30 243 5.9E-21 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS25305 631b4e90d550d71b12533cc28d61c4bd 245 SMART SM00062 36 244 0.0086 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS25305 631b4e90d550d71b12533cc28d61c4bd 245 PANTHER PTHR35936 1 242 1.8E-42 T 22-04-2016 PP4_RS25305 631b4e90d550d71b12533cc28d61c4bd 245 SUPERFAMILY SSF53850 23 243 9.28E-37 T 22-04-2016 PP4_RS25305 631b4e90d550d71b12533cc28d61c4bd 245 Gene3D G3DSA:3.40.190.10 129 187 3.0E-4 T 22-04-2016 PP4_RS25305 631b4e90d550d71b12533cc28d61c4bd 245 PANTHER PTHR35936:SF3 1 242 1.8E-42 T 22-04-2016 PP4_RS25305 631b4e90d550d71b12533cc28d61c4bd 245 Gene3D G3DSA:3.40.190.10 30 128 5.8E-11 T 22-04-2016 PP4_RS19765 7d3023cf2692646340530050a313f4a6 317 Gene3D G3DSA:3.40.190.10 182 264 7.0E-17 T 22-04-2016 PP4_RS19765 7d3023cf2692646340530050a313f4a6 317 Pfam PF03466 LysR substrate binding domain 91 301 1.2E-32 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS19765 7d3023cf2692646340530050a313f4a6 317 PANTHER PTHR30126 7 315 8.0E-114 T 22-04-2016 PP4_RS19765 7d3023cf2692646340530050a313f4a6 317 SUPERFAMILY SSF46785 8 115 1.95E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS19765 7d3023cf2692646340530050a313f4a6 317 Gene3D G3DSA:1.10.10.10 8 88 2.4E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS19765 7d3023cf2692646340530050a313f4a6 317 Gene3D G3DSA:3.40.190.10 96 181 8.2E-18 T 22-04-2016 PP4_RS19765 7d3023cf2692646340530050a313f4a6 317 SUPERFAMILY SSF53850 93 305 1.81E-33 T 22-04-2016 PP4_RS19765 7d3023cf2692646340530050a313f4a6 317 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 65 1.1E-17 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS19765 7d3023cf2692646340530050a313f4a6 317 PANTHER PTHR30126:SF12 7 315 8.0E-114 T 22-04-2016 PP4_RS16415 867459033a9c171b620c9dc52b07f5f4 431 Gene3D G3DSA:1.20.1250.20 20 209 1.7E-40 T 22-04-2016 PP4_RS16415 867459033a9c171b620c9dc52b07f5f4 431 PIRSF PIRSF002808 1 431 3.6E-112 T 22-04-2016 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 PP4_RS16415 867459033a9c171b620c9dc52b07f5f4 431 Gene3D G3DSA:1.20.1250.20 241 429 9.8E-28 T 22-04-2016 PP4_RS16415 867459033a9c171b620c9dc52b07f5f4 431 PANTHER PTHR11662 17 429 5.7E-55 T 22-04-2016 PP4_RS16415 867459033a9c171b620c9dc52b07f5f4 431 Pfam PF07690 Major Facilitator Superfamily 29 393 6.4E-44 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS16415 867459033a9c171b620c9dc52b07f5f4 431 SUPERFAMILY SSF103473 15 431 1.44E-72 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS10865 4a4b4e3c8b4bf5e728084058edafe1dc 516 SMART SM00086 264 306 0.0096 T 22-04-2016 IPR001610 PAC motif PP4_RS10865 4a4b4e3c8b4bf5e728084058edafe1dc 516 Gene3D G3DSA:3.30.565.10 387 497 1.2E-13 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS10865 4a4b4e3c8b4bf5e728084058edafe1dc 516 Gene3D G3DSA:3.30.450.20 194 304 4.5E-17 T 22-04-2016 PP4_RS10865 4a4b4e3c8b4bf5e728084058edafe1dc 516 SUPERFAMILY SSF55785 203 313 3.54E-17 T 22-04-2016 IPR000014 PAS domain PP4_RS10865 4a4b4e3c8b4bf5e728084058edafe1dc 516 SUPERFAMILY SSF55874 419 514 1.7E-15 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS10865 4a4b4e3c8b4bf5e728084058edafe1dc 516 PANTHER PTHR24423 190 491 6.9E-34 T 22-04-2016 PP4_RS10865 4a4b4e3c8b4bf5e728084058edafe1dc 516 PANTHER PTHR24423 1 11 6.9E-34 T 22-04-2016 PP4_RS10865 4a4b4e3c8b4bf5e728084058edafe1dc 516 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 196 313 2.2E-7 T 22-04-2016 IPR000014 PAS domain PP4_RS10865 4a4b4e3c8b4bf5e728084058edafe1dc 516 Pfam PF08448 PAS fold 198 308 1.3E-21 T 22-04-2016 IPR013656 PAS fold-4 PP4_RS10865 4a4b4e3c8b4bf5e728084058edafe1dc 516 PANTHER PTHR24423:SF472 190 491 6.9E-34 T 22-04-2016 PP4_RS10865 4a4b4e3c8b4bf5e728084058edafe1dc 516 PANTHER PTHR24423:SF472 1 11 6.9E-34 T 22-04-2016 PP4_RS10865 4a4b4e3c8b4bf5e728084058edafe1dc 516 Pfam PF07568 Histidine kinase 333 405 1.2E-19 T 22-04-2016 IPR011495 Signal transduction histidine kinase, subgroup 2, dimerisation and phosphoacceptor domain PP4_RS10865 4a4b4e3c8b4bf5e728084058edafe1dc 516 SUPERFAMILY SSF55781 25 181 1.05E-14 T 22-04-2016 IPR029016 GAF domain-like PP4_RS10865 4a4b4e3c8b4bf5e728084058edafe1dc 516 Gene3D G3DSA:3.30.450.40 19 181 2.2E-25 T 22-04-2016 IPR029016 GAF domain-like PP4_RS10865 4a4b4e3c8b4bf5e728084058edafe1dc 516 SMART SM00065 40 188 1.2E-4 T 22-04-2016 IPR003018 GAF domain GO:0005515 PP4_RS10865 4a4b4e3c8b4bf5e728084058edafe1dc 516 SMART SM00387 425 516 1.2E-7 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS10865 4a4b4e3c8b4bf5e728084058edafe1dc 516 Pfam PF13185 GAF domain 39 179 7.7E-10 T 22-04-2016 IPR003018 GAF domain GO:0005515 PP4_RS10865 4a4b4e3c8b4bf5e728084058edafe1dc 516 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 430 513 3.5E-7 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS25930 8cb1a4b6dbc00ace569bb6615158d4a0 415 PRINTS PR00811 Bacterial general secretion pathway protein D signature 183 193 3.4E-19 T 22-04-2016 IPR001775 GspD/PilQ family PP4_RS25930 8cb1a4b6dbc00ace569bb6615158d4a0 415 PRINTS PR00811 Bacterial general secretion pathway protein D signature 394 408 3.4E-19 T 22-04-2016 IPR001775 GspD/PilQ family PP4_RS25930 8cb1a4b6dbc00ace569bb6615158d4a0 415 PRINTS PR00811 Bacterial general secretion pathway protein D signature 246 270 3.4E-19 T 22-04-2016 IPR001775 GspD/PilQ family PP4_RS25930 8cb1a4b6dbc00ace569bb6615158d4a0 415 PRINTS PR00811 Bacterial general secretion pathway protein D signature 371 389 3.4E-19 T 22-04-2016 IPR001775 GspD/PilQ family PP4_RS25930 8cb1a4b6dbc00ace569bb6615158d4a0 415 Pfam PF00263 Bacterial type II and III secretion system protein 250 406 9.2E-50 T 22-04-2016 IPR004846 Type II/III secretion system GO:0009306 PP4_RS25930 8cb1a4b6dbc00ace569bb6615158d4a0 415 Pfam PF03958 Bacterial type II/III secretion system short domain 118 183 3.7E-12 T 22-04-2016 IPR005644 NolW-like PP4_RS25930 8cb1a4b6dbc00ace569bb6615158d4a0 415 ProSitePatterns PS00875 Bacterial type II secretion system protein D signature. 352 385 - T 22-04-2016 IPR004845 Type II secretion system GspD, conserved site GO:0008565 PP4_RS25930 8cb1a4b6dbc00ace569bb6615158d4a0 415 Pfam PF07660 Secretin and TonB N terminus short domain 43 90 3.9E-10 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS25930 8cb1a4b6dbc00ace569bb6615158d4a0 415 SMART SM00965 43 91 1.3E-9 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS25930 8cb1a4b6dbc00ace569bb6615158d4a0 415 PANTHER PTHR30604 1 415 3.7E-101 T 22-04-2016 PP4_RS12820 e8e2544cbc803ea5618d9b6751bb3a71 386 Gene3D G3DSA:3.40.50.300 41 269 8.8E-79 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS12820 e8e2544cbc803ea5618d9b6751bb3a71 386 ProSitePatterns PS00211 ABC transporters family signature. 168 182 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS12820 e8e2544cbc803ea5618d9b6751bb3a71 386 SUPERFAMILY SSF52540 46 272 1.14E-75 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS12820 e8e2544cbc803ea5618d9b6751bb3a71 386 Gene3D G3DSA:3.10.580.10 340 385 2.2E-4 T 22-04-2016 PP4_RS12820 e8e2544cbc803ea5618d9b6751bb3a71 386 SUPERFAMILY SSF54631 306 384 1.69E-5 T 22-04-2016 PP4_RS12820 e8e2544cbc803ea5618d9b6751bb3a71 386 SMART SM00382 56 253 1.3E-15 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS12820 e8e2544cbc803ea5618d9b6751bb3a71 386 Pfam PF00005 ABC transporter 50 195 2.3E-33 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS12820 e8e2544cbc803ea5618d9b6751bb3a71 386 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 40 384 4.4E-122 T 22-04-2016 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 PP4_RS12820 e8e2544cbc803ea5618d9b6751bb3a71 386 PANTHER PTHR24220 44 277 7.8E-149 T 22-04-2016 PP4_RS12820 e8e2544cbc803ea5618d9b6751bb3a71 386 PANTHER PTHR24220 9 19 7.8E-149 T 22-04-2016 PP4_RS12820 e8e2544cbc803ea5618d9b6751bb3a71 386 PANTHER PTHR24220:SF374 44 277 7.8E-149 T 22-04-2016 PP4_RS12820 e8e2544cbc803ea5618d9b6751bb3a71 386 PANTHER PTHR24220:SF374 9 19 7.8E-149 T 22-04-2016 PP4_RS18080 afb23dd82636d7ca2b73cf076dae61ad 92 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 34 85 2.8E-17 T 22-04-2016 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 PP4_RS18080 afb23dd82636d7ca2b73cf076dae61ad 92 PANTHER PTHR34702 1 92 3.0E-15 T 22-04-2016 PP4_RS18080 afb23dd82636d7ca2b73cf076dae61ad 92 Gene3D G3DSA:1.20.1630.10 5 83 9.2E-4 T 22-04-2016 PP4_RS18080 afb23dd82636d7ca2b73cf076dae61ad 92 PANTHER PTHR34702:SF1 1 92 3.0E-15 T 22-04-2016 PP4_RS18080 afb23dd82636d7ca2b73cf076dae61ad 92 PIRSF PIRSF028784 1 92 4.8E-26 T 22-04-2016 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 PP4_RS11270 83902ee31354aec936966557b776561d 324 PANTHER PTHR11695:SF605 16 323 1.6E-96 T 22-04-2016 PP4_RS11270 83902ee31354aec936966557b776561d 324 Gene3D G3DSA:3.90.180.10 11 145 5.2E-32 T 22-04-2016 IPR011032 GroES-like PP4_RS11270 83902ee31354aec936966557b776561d 324 Pfam PF00107 Zinc-binding dehydrogenase 151 256 1.4E-20 T 22-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 PP4_RS11270 83902ee31354aec936966557b776561d 324 Gene3D G3DSA:3.40.50.720 146 255 3.2E-24 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS11270 83902ee31354aec936966557b776561d 324 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 29 87 2.9E-7 T 22-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 PP4_RS11270 83902ee31354aec936966557b776561d 324 SMART SM00829 11 322 1.1E-12 T 22-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 PP4_RS11270 83902ee31354aec936966557b776561d 324 SUPERFAMILY SSF50129 10 141 4.72E-30 T 22-04-2016 IPR011032 GroES-like PP4_RS11270 83902ee31354aec936966557b776561d 324 PANTHER PTHR11695 16 323 1.6E-96 T 22-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PP4_RS11270 83902ee31354aec936966557b776561d 324 SUPERFAMILY SSF51735 112 265 3.22E-34 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS07270 9be08896c83e3590b683e38efeba4f85 380 SUPERFAMILY SSF160544 245 353 2.35E-37 T 22-04-2016 IPR029025 Type III secretion system substrate exporter, C-terminal PP4_RS07270 9be08896c83e3590b683e38efeba4f85 380 PANTHER PTHR30531:SF4 1 363 2.5E-193 T 22-04-2016 PP4_RS07270 9be08896c83e3590b683e38efeba4f85 380 PANTHER PTHR30531 1 363 2.5E-193 T 22-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 PP4_RS07270 9be08896c83e3590b683e38efeba4f85 380 Pfam PF01312 FlhB HrpN YscU SpaS Family 8 349 1.1E-121 T 22-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 PP4_RS07270 9be08896c83e3590b683e38efeba4f85 380 TIGRFAM TIGR00328 flhB: flagellar biosynthetic protein FlhB 8 355 2.8E-118 T 22-04-2016 IPR006136 Flagellar biosynthetic protein FlhB GO:0015031|GO:0016021|GO:0044780 PP4_RS07270 9be08896c83e3590b683e38efeba4f85 380 Gene3D G3DSA:3.40.1690.10 218 358 5.9E-60 T 22-04-2016 IPR029025 Type III secretion system substrate exporter, C-terminal PP4_RS07270 9be08896c83e3590b683e38efeba4f85 380 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 304 325 2.4E-35 T 22-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 PP4_RS07270 9be08896c83e3590b683e38efeba4f85 380 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 273 288 2.4E-35 T 22-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 PP4_RS07270 9be08896c83e3590b683e38efeba4f85 380 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 209 227 2.4E-35 T 22-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 PP4_RS07270 9be08896c83e3590b683e38efeba4f85 380 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 11 33 2.4E-35 T 22-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 PP4_RS07270 9be08896c83e3590b683e38efeba4f85 380 PRINTS PR00950 Type III secretion system inner membrane S protein family signature 229 246 2.4E-35 T 22-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 PP4_RS01725 c9d64e8ded847e4bc8acbff6fdee54a0 410 PANTHER PTHR10909 256 361 3.1E-15 T 22-04-2016 PP4_RS01725 c9d64e8ded847e4bc8acbff6fdee54a0 410 Gene3D G3DSA:3.40.50.1220 277 399 1.0E-37 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain PP4_RS01725 c9d64e8ded847e4bc8acbff6fdee54a0 410 Pfam PF00766 Electron transfer flavoprotein FAD-binding domain 283 358 2.9E-24 T 22-04-2016 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal PP4_RS01725 c9d64e8ded847e4bc8acbff6fdee54a0 410 Gene3D G3DSA:3.40.50.620 95 219 2.9E-12 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS01725 c9d64e8ded847e4bc8acbff6fdee54a0 410 PANTHER PTHR10909:SF299 256 361 3.1E-15 T 22-04-2016 PP4_RS01725 c9d64e8ded847e4bc8acbff6fdee54a0 410 Pfam PF01012 Electron transfer flavoprotein domain 101 214 8.8E-14 T 22-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 PP4_RS01725 c9d64e8ded847e4bc8acbff6fdee54a0 410 SUPERFAMILY SSF52467 282 397 7.14E-33 T 22-04-2016 IPR029035 DHS-like NAD/FAD-binding domain PP4_RS01725 c9d64e8ded847e4bc8acbff6fdee54a0 410 SUPERFAMILY SSF52402 95 219 9.0E-19 T 22-04-2016 PP4_RS01725 c9d64e8ded847e4bc8acbff6fdee54a0 410 SMART SM00893 95 270 5.5E-4 T 22-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 PP4_RS25900 3c903eb0c7291406a1f2c65a23ed72d1 354 ProSitePatterns PS00907 Uroporphyrinogen decarboxylase signature 2. 142 158 - T 22-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PP4_RS25900 3c903eb0c7291406a1f2c65a23ed72d1 354 Hamap MF_00218 Uroporphyrinogen decarboxylase [hemE]. 6 349 50.803 T 22-04-2016 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PP4_RS25900 3c903eb0c7291406a1f2c65a23ed72d1 354 SUPERFAMILY SSF51726 1 353 1.41E-123 T 22-04-2016 PP4_RS25900 3c903eb0c7291406a1f2c65a23ed72d1 354 PANTHER PTHR21091:SF2 1 354 6.0E-156 T 22-04-2016 PP4_RS25900 3c903eb0c7291406a1f2c65a23ed72d1 354 PANTHER PTHR21091 1 354 6.0E-156 T 22-04-2016 PP4_RS25900 3c903eb0c7291406a1f2c65a23ed72d1 354 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 5 347 3.5E-140 T 22-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PP4_RS25900 3c903eb0c7291406a1f2c65a23ed72d1 354 ProSitePatterns PS00906 Uroporphyrinogen decarboxylase signature 1. 22 31 - T 22-04-2016 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PP4_RS25900 3c903eb0c7291406a1f2c65a23ed72d1 354 TIGRFAM TIGR01464 hemE: uroporphyrinogen decarboxylase 9 347 5.9E-135 T 22-04-2016 IPR006361 Uroporphyrinogen decarboxylase HemE GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PP4_RS25900 3c903eb0c7291406a1f2c65a23ed72d1 354 Gene3D G3DSA:3.20.20.210 3 353 7.0E-155 T 22-04-2016 PP4_RS04920 1704fdfd6fbc3d74289d6d4c344b654d 152 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 6 143 9.5E-21 T 22-04-2016 IPR009936 Protein of unknown function DUF1468 PP4_RS02920 8ef52b614ac1a8e347bcc46a31ee3b93 296 SUPERFAMILY SSF53474 35 294 6.49E-57 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS02920 8ef52b614ac1a8e347bcc46a31ee3b93 296 PANTHER PTHR40841 3 292 7.6E-85 T 22-04-2016 PP4_RS02920 8ef52b614ac1a8e347bcc46a31ee3b93 296 PANTHER PTHR40841:SF2 3 292 7.6E-85 T 22-04-2016 PP4_RS02920 8ef52b614ac1a8e347bcc46a31ee3b93 296 Pfam PF00756 Putative esterase 54 213 1.0E-13 T 22-04-2016 IPR000801 Putative esterase PP4_RS02920 8ef52b614ac1a8e347bcc46a31ee3b93 296 Gene3D G3DSA:3.40.50.1820 44 294 9.6E-68 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS16345 86bd1a136a879f4a9443de9767ed9d2a 336 PANTHER PTHR22604 1 336 3.4E-90 T 22-04-2016 PP4_RS16345 86bd1a136a879f4a9443de9767ed9d2a 336 SUPERFAMILY SSF55347 112 305 2.29E-30 T 22-04-2016 PP4_RS16345 86bd1a136a879f4a9443de9767ed9d2a 336 PANTHER PTHR22604:SF123 1 336 3.4E-90 T 22-04-2016 PP4_RS16345 86bd1a136a879f4a9443de9767ed9d2a 336 Gene3D G3DSA:3.40.50.720 1 125 1.8E-35 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS16345 86bd1a136a879f4a9443de9767ed9d2a 336 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 1 108 1.5E-20 T 22-04-2016 IPR000683 Oxidoreductase, N-terminal GO:0016491 PP4_RS16345 86bd1a136a879f4a9443de9767ed9d2a 336 SUPERFAMILY SSF51735 1 139 1.02E-37 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS16345 86bd1a136a879f4a9443de9767ed9d2a 336 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 123 213 1.1E-8 T 22-04-2016 IPR004104 Oxidoreductase, C-terminal GO:0008152|GO:0016491|GO:0055114 PP4_RS16345 86bd1a136a879f4a9443de9767ed9d2a 336 Gene3D G3DSA:3.30.360.10 126 331 9.1E-40 T 22-04-2016 PP4_RS04425 0252d34a075ec78415914bd3a96b16a9 243 PANTHER PTHR13343:SF4 4 243 2.4E-52 T 22-04-2016 PP4_RS04425 0252d34a075ec78415914bd3a96b16a9 243 PANTHER PTHR13343 4 243 2.4E-52 T 22-04-2016 PP4_RS04425 0252d34a075ec78415914bd3a96b16a9 243 SUPERFAMILY SSF50475 6 235 4.64E-55 T 22-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 PP4_RS04425 0252d34a075ec78415914bd3a96b16a9 243 Gene3D G3DSA:2.30.110.10 4 148 1.7E-54 T 22-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 PP4_RS04425 0252d34a075ec78415914bd3a96b16a9 243 Pfam PF10615 Protein of unknown function (DUF2470) 158 227 1.5E-15 T 22-04-2016 IPR019595 Domain of unknown function DUF2470 PP4_RS04425 0252d34a075ec78415914bd3a96b16a9 243 Gene3D G3DSA:3.20.180.10 152 238 3.3E-33 T 22-04-2016 IPR019595 Domain of unknown function DUF2470 PP4_RS04425 0252d34a075ec78415914bd3a96b16a9 243 Pfam PF13883 Pyridoxamine 5'-phosphate oxidase 5 146 2.2E-16 T 22-04-2016 PP4_RS10545 090ddedfcd0796ecc0887a0e9339dba0 443 PANTHER PTHR23508 1 228 2.3E-182 T 22-04-2016 PP4_RS10545 090ddedfcd0796ecc0887a0e9339dba0 443 PANTHER PTHR23508 245 429 2.3E-182 T 22-04-2016 PP4_RS10545 090ddedfcd0796ecc0887a0e9339dba0 443 SUPERFAMILY SSF103473 7 431 6.02E-75 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS10545 090ddedfcd0796ecc0887a0e9339dba0 443 Pfam PF07690 Major Facilitator Superfamily 33 335 3.1E-39 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS10545 090ddedfcd0796ecc0887a0e9339dba0 443 Gene3D G3DSA:1.20.1250.20 252 431 2.2E-17 T 22-04-2016 PP4_RS10545 090ddedfcd0796ecc0887a0e9339dba0 443 ProSitePatterns PS00217 Sugar transport proteins signature 2. 117 142 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PP4_RS10545 090ddedfcd0796ecc0887a0e9339dba0 443 PANTHER PTHR23508:SF15 1 228 2.3E-182 T 22-04-2016 PP4_RS10545 090ddedfcd0796ecc0887a0e9339dba0 443 PANTHER PTHR23508:SF15 245 429 2.3E-182 T 22-04-2016 PP4_RS10545 090ddedfcd0796ecc0887a0e9339dba0 443 Gene3D G3DSA:1.20.1250.20 16 199 2.0E-33 T 22-04-2016 PP4_RS09975 d0c23856e11a3d9f49c6963a0d2a527b 325 SUPERFAMILY SSF52283 1 136 4.68E-23 T 22-04-2016 PP4_RS09975 d0c23856e11a3d9f49c6963a0d2a527b 325 Gene3D G3DSA:3.40.50.720 119 287 5.2E-51 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS09975 d0c23856e11a3d9f49c6963a0d2a527b 325 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 31 317 7.1E-18 T 22-04-2016 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0008152|GO:0016616|GO:0051287|GO:0055114 PP4_RS09975 d0c23856e11a3d9f49c6963a0d2a527b 325 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 112 286 1.2E-46 T 22-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 PP4_RS09975 d0c23856e11a3d9f49c6963a0d2a527b 325 PANTHER PTHR10996 1 312 1.4E-95 T 22-04-2016 PP4_RS09975 d0c23856e11a3d9f49c6963a0d2a527b 325 Gene3D G3DSA:3.40.50.720 1 118 8.2E-28 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS09975 d0c23856e11a3d9f49c6963a0d2a527b 325 SUPERFAMILY SSF51735 107 286 1.82E-48 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS09975 d0c23856e11a3d9f49c6963a0d2a527b 325 PANTHER PTHR10996:SF127 1 312 1.4E-95 T 22-04-2016 PP4_RS00330 c8c4e75620a53ecb38a2579c1eca3451 274 Gene3D G3DSA:3.40.192.10 1 105 1.1E-34 T 22-04-2016 PP4_RS00330 c8c4e75620a53ecb38a2579c1eca3451 274 SUPERFAMILY SSF53223 1 100 2.01E-29 T 22-04-2016 PP4_RS00330 c8c4e75620a53ecb38a2579c1eca3451 274 PANTHER PTHR21089:SF2 1 273 2.2E-137 T 22-04-2016 PP4_RS00330 c8c4e75620a53ecb38a2579c1eca3451 274 Hamap MF_00222 Shikimate dehydrogenase (NADP(+)) [aroE]. 1 270 31.52 T 22-04-2016 IPR022893 Shikimate dehydrogenase family GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 PP4_RS00330 c8c4e75620a53ecb38a2579c1eca3451 274 Gene3D G3DSA:3.40.50.720 106 245 1.4E-44 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS00330 c8c4e75620a53ecb38a2579c1eca3451 274 SUPERFAMILY SSF51735 101 270 3.92E-40 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS00330 c8c4e75620a53ecb38a2579c1eca3451 274 TIGRFAM TIGR00507 aroE: shikimate dehydrogenase 4 271 1.7E-79 T 22-04-2016 IPR011342 Shikimate dehydrogenase GO:0004764|GO:0019632|GO:0050661|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 PP4_RS00330 c8c4e75620a53ecb38a2579c1eca3451 274 Pfam PF01488 Shikimate / quinate 5-dehydrogenase 116 191 7.2E-11 T 22-04-2016 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase PP4_RS00330 c8c4e75620a53ecb38a2579c1eca3451 274 PANTHER PTHR21089 1 273 2.2E-137 T 22-04-2016 PP4_RS00330 c8c4e75620a53ecb38a2579c1eca3451 274 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 6 87 2.5E-24 T 22-04-2016 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 PP4_RS26360 e1e3af092ec652cb5d1c35ba6ecaa80b 219 Gene3D G3DSA:1.10.3720.10 13 217 4.7E-35 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS26360 e1e3af092ec652cb5d1c35ba6ecaa80b 219 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 38 215 1.7E-13 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS26360 e1e3af092ec652cb5d1c35ba6ecaa80b 219 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 111 5.5E-20 T 22-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PP4_RS26360 e1e3af092ec652cb5d1c35ba6ecaa80b 219 SUPERFAMILY SSF161098 14 202 1.7E-37 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS26360 e1e3af092ec652cb5d1c35ba6ecaa80b 219 PANTHER PTHR30614 6 217 4.5E-60 T 22-04-2016 PP4_RS04215 6e08ce9256d59aded2d64b85423c7d44 130 PANTHER PTHR21569 1 130 3.1E-72 T 22-04-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 PP4_RS04215 6e08ce9256d59aded2d64b85423c7d44 130 Pfam PF00380 Ribosomal protein S9/S16 10 130 8.3E-48 T 22-04-2016 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 PP4_RS04215 6e08ce9256d59aded2d64b85423c7d44 130 Gene3D G3DSA:3.30.230.10 5 130 2.2E-51 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PP4_RS04215 6e08ce9256d59aded2d64b85423c7d44 130 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 1 130 33.032 T 22-04-2016 IPR023035 Ribosomal protein S9, bacterial/plastid PP4_RS04215 6e08ce9256d59aded2d64b85423c7d44 130 ProSitePatterns PS00360 Ribosomal protein S9 signature. 69 87 - T 22-04-2016 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 PP4_RS04215 6e08ce9256d59aded2d64b85423c7d44 130 SUPERFAMILY SSF54211 6 130 4.93E-48 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PP4_RS21100 0e98e1c172343e9f1e61363a1f171d30 863 SUPERFAMILY SSF53448 404 662 9.09E-49 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS21100 0e98e1c172343e9f1e61363a1f171d30 863 PANTHER PTHR10587:SF64 328 590 2.5E-81 T 22-04-2016 PP4_RS21100 0e98e1c172343e9f1e61363a1f171d30 863 Pfam PF13641 Glycosyltransferase like family 2 421 649 1.3E-32 T 22-04-2016 PP4_RS21100 0e98e1c172343e9f1e61363a1f171d30 863 SUPERFAMILY SSF51445 40 302 2.03E-50 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily PP4_RS21100 0e98e1c172343e9f1e61363a1f171d30 863 Gene3D G3DSA:3.90.550.10 421 665 8.7E-32 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS21100 0e98e1c172343e9f1e61363a1f171d30 863 Gene3D G3DSA:3.20.20.80 48 303 1.3E-34 T 22-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PP4_RS21100 0e98e1c172343e9f1e61363a1f171d30 863 PANTHER PTHR10587 328 590 2.5E-81 T 22-04-2016 PP4_RS22600 5fb7f8611d1490910ae47e97e542f3eb 579 Gene3D G3DSA:3.40.50.2300 1 102 6.2E-25 T 22-04-2016 PP4_RS22600 5fb7f8611d1490910ae47e97e542f3eb 579 Gene3D G3DSA:3.40.50.2300 118 219 3.5E-40 T 22-04-2016 PP4_RS22600 5fb7f8611d1490910ae47e97e542f3eb 579 TIGRFAM TIGR01427 PTS_IIC_fructo: PTS system, Fru family, IIC component 229 565 9.0E-141 T 22-04-2016 IPR006327 Phosphotransferase system, fructose IIC component GO:0005351|GO:0008982|GO:0009401|GO:0016021 PP4_RS22600 5fb7f8611d1490910ae47e97e542f3eb 579 Pfam PF02378 Phosphotransferase system, EIIC 246 509 3.2E-17 T 22-04-2016 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 PP4_RS22600 5fb7f8611d1490910ae47e97e542f3eb 579 PANTHER PTHR30505 1 564 5.0E-263 T 22-04-2016 PP4_RS22600 5fb7f8611d1490910ae47e97e542f3eb 579 PANTHER PTHR30505:SF0 1 564 5.0E-263 T 22-04-2016 PP4_RS22600 5fb7f8611d1490910ae47e97e542f3eb 579 SUPERFAMILY SSF52794 2 102 4.01E-24 T 22-04-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 PP4_RS22600 5fb7f8611d1490910ae47e97e542f3eb 579 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 5 86 8.8E-9 T 22-04-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 PP4_RS22600 5fb7f8611d1490910ae47e97e542f3eb 579 Pfam PF02302 PTS system, Lactose/Cellobiose specific IIB subunit 122 203 8.2E-18 T 22-04-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 PP4_RS22600 5fb7f8611d1490910ae47e97e542f3eb 579 SUPERFAMILY SSF52794 119 218 1.74E-35 T 22-04-2016 IPR003501 Phosphotransferase system, EIIB component, type 2/3 GO:0008982|GO:0009401 PP4_RS22600 5fb7f8611d1490910ae47e97e542f3eb 579 TIGRFAM TIGR00829 FRU: PTS system, Fru family, IIB component 121 204 1.4E-33 T 22-04-2016 IPR003353 Phosphotransferase system, fructose-specific IIB subunit GO:0009401|GO:0022877 PP4_RS24835 3a734e363ef061ccff39a7e2b35bcffe 688 PANTHER PTHR30441:SF2 6 680 2.9E-149 T 22-04-2016 PP4_RS24835 3a734e363ef061ccff39a7e2b35bcffe 688 PANTHER PTHR30441 6 680 2.9E-149 T 22-04-2016 PP4_RS24835 3a734e363ef061ccff39a7e2b35bcffe 688 Pfam PF05170 AsmA family 1 571 1.2E-149 T 22-04-2016 IPR007844 AsmA PP4_RS24455 6e240908d5b9c48af4eb0b7e383491a8 207 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 6 197 2.1E-56 T 22-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 PP4_RS24455 6e240908d5b9c48af4eb0b7e383491a8 207 PANTHER PTHR20857 1 200 2.0E-53 T 22-04-2016 PP4_RS24455 6e240908d5b9c48af4eb0b7e383491a8 207 SUPERFAMILY SSF51391 3 199 8.76E-60 T 22-04-2016 IPR022998 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 PP4_RS24455 6e240908d5b9c48af4eb0b7e383491a8 207 Gene3D G3DSA:3.20.20.70 4 199 1.1E-60 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS24455 6e240908d5b9c48af4eb0b7e383491a8 207 Pfam PF02581 Thiamine monophosphate synthase/TENI 6 184 7.1E-53 T 22-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 PP4_RS24455 6e240908d5b9c48af4eb0b7e383491a8 207 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 4 206 24.704 T 22-04-2016 IPR003733 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357|UniPathway: UPA00060 PP4_RS17680 9d97cfa31ae0af9a490f06146e9ca7a3 118 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 24 110 8.1E-20 T 22-04-2016 IPR009241 Toxin HigB-like PP4_RS06400 9cc22b9d677f16bc6323b51276b92e40 313 PANTHER PTHR30273:SF3 3 313 6.4E-97 T 22-04-2016 PP4_RS06400 9cc22b9d677f16bc6323b51276b92e40 313 PIRSF PIRSF018266 2 312 3.3E-83 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS06400 9cc22b9d677f16bc6323b51276b92e40 313 PANTHER PTHR30273 3 313 6.4E-97 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS06400 9cc22b9d677f16bc6323b51276b92e40 313 Pfam PF04773 FecR protein 108 198 9.0E-19 T 22-04-2016 IPR006860 FecR protein PP4_RS06400 9cc22b9d677f16bc6323b51276b92e40 313 Pfam PF16220 Domain of unknown function (DUF4880) 12 52 8.6E-9 T 22-04-2016 IPR032623 FecR, N-terminal PP4_RS24285 17e347f394ffe809145ac251d34d62da 253 PANTHER PTHR24322:SF228 12 184 4.5E-43 T 22-04-2016 PP4_RS24285 17e347f394ffe809145ac251d34d62da 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 5.1E-38 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS24285 17e347f394ffe809145ac251d34d62da 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 124 140 5.1E-38 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS24285 17e347f394ffe809145ac251d34d62da 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 76 87 5.1E-38 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS24285 17e347f394ffe809145ac251d34d62da 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 148 167 5.1E-38 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS24285 17e347f394ffe809145ac251d34d62da 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 215 235 5.1E-38 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS24285 17e347f394ffe809145ac251d34d62da 253 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 186 5.1E-38 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS24285 17e347f394ffe809145ac251d34d62da 253 Pfam PF00106 short chain dehydrogenase 8 184 5.3E-49 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS24285 17e347f394ffe809145ac251d34d62da 253 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 135 163 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PP4_RS24285 17e347f394ffe809145ac251d34d62da 253 Gene3D G3DSA:3.40.50.720 2 250 9.8E-68 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS24285 17e347f394ffe809145ac251d34d62da 253 SUPERFAMILY SSF51735 6 250 3.36E-67 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS24285 17e347f394ffe809145ac251d34d62da 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 130 138 1.3E-10 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS24285 17e347f394ffe809145ac251d34d62da 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 148 167 1.3E-10 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS24285 17e347f394ffe809145ac251d34d62da 253 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 76 87 1.3E-10 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS24285 17e347f394ffe809145ac251d34d62da 253 PANTHER PTHR24322 12 184 4.5E-43 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS04075 2d20d2a26a090de7739b84a200cdef59 388 Gene3D G3DSA:2.40.50.100 212 292 7.8E-5 T 22-04-2016 PP4_RS04075 2d20d2a26a090de7739b84a200cdef59 388 Gene3D G3DSA:2.40.10.220 14 119 5.6E-7 T 22-04-2016 PP4_RS04075 2d20d2a26a090de7739b84a200cdef59 388 Pfam PF13437 HlyD family secretion protein 261 352 4.3E-9 T 22-04-2016 PP4_RS04075 2d20d2a26a090de7739b84a200cdef59 388 SUPERFAMILY SSF141371 10 127 2.55E-17 T 22-04-2016 PP4_RS04075 2d20d2a26a090de7739b84a200cdef59 388 Pfam PF07238 PilZ domain 16 115 1.0E-12 T 22-04-2016 IPR009875 PilZ domain GO:0035438 PP4_RS08150 1e74e857389ea07025df5cd9d1fb398a 185 TIGRFAM TIGR00681 kdpC: K+-transporting ATPase, C subunit 5 181 2.0E-56 T 22-04-2016 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 PP4_RS08150 1e74e857389ea07025df5cd9d1fb398a 185 PANTHER PTHR30042 1 182 3.0E-73 T 22-04-2016 PP4_RS08150 1e74e857389ea07025df5cd9d1fb398a 185 PANTHER PTHR30042:SF2 1 182 3.0E-73 T 22-04-2016 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 PP4_RS08150 1e74e857389ea07025df5cd9d1fb398a 185 Pfam PF02669 K+-transporting ATPase, c chain 6 179 4.1E-61 T 22-04-2016 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 PP4_RS08150 1e74e857389ea07025df5cd9d1fb398a 185 Hamap MF_00276 Potassium-transporting ATPase KdpC subunit [kdpC]. 2 181 32.873 T 22-04-2016 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 PP4_RS08150 1e74e857389ea07025df5cd9d1fb398a 185 PIRSF PIRSF001296 1 185 6.9E-64 T 22-04-2016 IPR003820 Potassium-transporting ATPase C chain GO:0006813|GO:0008556|GO:0016021 PP4_RS13165 0b99aa1c76d6b41e4d261f8120829d64 329 SUPERFAMILY SSF47240 46 290 6.49E-81 T 22-04-2016 IPR009078 Ferritin-like superfamily PP4_RS13165 0b99aa1c76d6b41e4d261f8120829d64 329 Gene3D G3DSA:1.20.1260.10 36 292 5.5E-100 T 22-04-2016 IPR012347 Ferritin-related PP4_RS13165 0b99aa1c76d6b41e4d261f8120829d64 329 PANTHER PTHR30458 16 329 4.4E-156 T 22-04-2016 PP4_RS13165 0b99aa1c76d6b41e4d261f8120829d64 329 TIGRFAM TIGR02156 PA_CoA_Oxy1: phenylacetate-CoA oxygenase, PaaG subunit 26 315 1.2E-169 T 22-04-2016 IPR011881 1,2-phenylacetyl-CoA epoxidase, subunit A GO:0010124|GO:0097266 KEGG: 00360+1.14.13.149+1.14.13.14|KEGG: 00940+1.14.13.14|MetaCyc: PWY-5176|UniPathway: UPA00930 PP4_RS13165 0b99aa1c76d6b41e4d261f8120829d64 329 PANTHER PTHR30458:SF0 16 329 4.4E-156 T 22-04-2016 PP4_RS13165 0b99aa1c76d6b41e4d261f8120829d64 329 Pfam PF05138 Phenylacetic acid catabolic protein 36 311 1.7E-97 T 22-04-2016 IPR007814 1,2-phenylacetyl-CoA epoxidase, subunit A/C GO:0010124 UniPathway: UPA00930 PP4_RS17845 d57c4a064bb840c0c2f3a18954ae75de 427 TIGRFAM TIGR00935 2a45: arsenite/antimonite efflux pump membrane protein 4 426 3.7E-203 T 22-04-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 PP4_RS17845 d57c4a064bb840c0c2f3a18954ae75de 427 PANTHER PTHR10283 4 427 1.8E-144 T 22-04-2016 PP4_RS17845 d57c4a064bb840c0c2f3a18954ae75de 427 Pfam PF02040 Arsenical pump membrane protein 4 423 5.1E-153 T 22-04-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 PP4_RS17845 d57c4a064bb840c0c2f3a18954ae75de 427 PANTHER PTHR10283:SF21 4 427 1.8E-144 T 22-04-2016 PP4_RS17845 d57c4a064bb840c0c2f3a18954ae75de 427 PRINTS PR00758 Arsenical pump membrane protein signature 177 200 3.6E-113 T 22-04-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 PP4_RS17845 d57c4a064bb840c0c2f3a18954ae75de 427 PRINTS PR00758 Arsenical pump membrane protein signature 217 242 3.6E-113 T 22-04-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 PP4_RS17845 d57c4a064bb840c0c2f3a18954ae75de 427 PRINTS PR00758 Arsenical pump membrane protein signature 278 302 3.6E-113 T 22-04-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 PP4_RS17845 d57c4a064bb840c0c2f3a18954ae75de 427 PRINTS PR00758 Arsenical pump membrane protein signature 397 421 3.6E-113 T 22-04-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 PP4_RS17845 d57c4a064bb840c0c2f3a18954ae75de 427 PRINTS PR00758 Arsenical pump membrane protein signature 144 168 3.6E-113 T 22-04-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 PP4_RS17845 d57c4a064bb840c0c2f3a18954ae75de 427 PRINTS PR00758 Arsenical pump membrane protein signature 364 389 3.6E-113 T 22-04-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 PP4_RS17845 d57c4a064bb840c0c2f3a18954ae75de 427 PRINTS PR00758 Arsenical pump membrane protein signature 323 345 3.6E-113 T 22-04-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 PP4_RS17845 d57c4a064bb840c0c2f3a18954ae75de 427 PRINTS PR00758 Arsenical pump membrane protein signature 101 125 3.6E-113 T 22-04-2016 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 PP4_RS09295 afb55a4d9fe34564d96ea74b8599e9c4 354 PANTHER PTHR11177 101 354 2.3E-70 T 22-04-2016 PP4_RS09295 afb55a4d9fe34564d96ea74b8599e9c4 354 Pfam PF12697 Alpha/beta hydrolase family 81 311 1.5E-7 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS09295 afb55a4d9fe34564d96ea74b8599e9c4 354 PANTHER PTHR11177:SF162 101 354 2.3E-70 T 22-04-2016 PP4_RS09295 afb55a4d9fe34564d96ea74b8599e9c4 354 Gene3D G3DSA:3.40.50.1820 19 353 6.5E-106 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS09295 afb55a4d9fe34564d96ea74b8599e9c4 354 SUPERFAMILY SSF53474 183 350 3.57E-25 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS09295 afb55a4d9fe34564d96ea74b8599e9c4 354 SUPERFAMILY SSF53474 55 148 3.57E-25 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS14135 cc6d67847a03e3993a8c1a2584ce0f6d 296 SUPERFAMILY SSF53850 88 274 9.62E-32 T 22-04-2016 PP4_RS14135 cc6d67847a03e3993a8c1a2584ce0f6d 296 Gene3D G3DSA:3.40.190.10 191 262 1.7E-12 T 22-04-2016 PP4_RS14135 cc6d67847a03e3993a8c1a2584ce0f6d 296 PANTHER PTHR30126 1 286 8.0E-129 T 22-04-2016 PP4_RS14135 cc6d67847a03e3993a8c1a2584ce0f6d 296 Gene3D G3DSA:3.40.190.10 88 190 1.2E-20 T 22-04-2016 PP4_RS14135 cc6d67847a03e3993a8c1a2584ce0f6d 296 SUPERFAMILY SSF46785 1 84 1.07E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS14135 cc6d67847a03e3993a8c1a2584ce0f6d 296 Gene3D G3DSA:1.10.10.10 1 80 1.6E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS14135 cc6d67847a03e3993a8c1a2584ce0f6d 296 Pfam PF03466 LysR substrate binding domain 86 274 1.2E-35 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS14135 cc6d67847a03e3993a8c1a2584ce0f6d 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 61 5.2E-16 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS14135 cc6d67847a03e3993a8c1a2584ce0f6d 296 PANTHER PTHR30126:SF8 1 286 8.0E-129 T 22-04-2016 PP4_RS06005 e4c1eac5243b765c97662b0b8253037c 187 Gene3D G3DSA:3.30.70.260 98 182 5.6E-12 T 22-04-2016 PP4_RS06005 e4c1eac5243b765c97662b0b8253037c 187 PANTHER PTHR34875:SF3 8 184 2.2E-49 T 22-04-2016 PP4_RS06005 e4c1eac5243b765c97662b0b8253037c 187 Gene3D G3DSA:3.30.70.260 9 88 7.6E-14 T 22-04-2016 PP4_RS06005 e4c1eac5243b765c97662b0b8253037c 187 SUPERFAMILY SSF55021 95 182 3.2E-12 T 22-04-2016 PP4_RS06005 e4c1eac5243b765c97662b0b8253037c 187 PIRSF PIRSF028103 8 183 6.2E-57 T 22-04-2016 IPR016867 Glycine cleavage system transcriptional repressor GO:0006355 PP4_RS06005 e4c1eac5243b765c97662b0b8253037c 187 PANTHER PTHR34875 8 184 2.2E-49 T 22-04-2016 PP4_RS06005 e4c1eac5243b765c97662b0b8253037c 187 SUPERFAMILY SSF55021 9 88 4.12E-9 T 22-04-2016 PP4_RS06005 e4c1eac5243b765c97662b0b8253037c 187 Pfam PF13740 ACT domain 10 84 4.4E-17 T 22-04-2016 PP4_RS19980 03df2d218f1b54b9c8e7bbfba938ea18 333 PANTHER PTHR11695:SF595 23 333 5.2E-124 T 22-04-2016 PP4_RS19980 03df2d218f1b54b9c8e7bbfba938ea18 333 Pfam PF00107 Zinc-binding dehydrogenase 158 279 2.9E-22 T 22-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 PP4_RS19980 03df2d218f1b54b9c8e7bbfba938ea18 333 Gene3D G3DSA:3.90.180.10 1 140 1.1E-55 T 22-04-2016 IPR011032 GroES-like PP4_RS19980 03df2d218f1b54b9c8e7bbfba938ea18 333 PANTHER PTHR11695 23 333 5.2E-124 T 22-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PP4_RS19980 03df2d218f1b54b9c8e7bbfba938ea18 333 Gene3D G3DSA:3.40.50.720 141 301 2.7E-69 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS19980 03df2d218f1b54b9c8e7bbfba938ea18 333 SUPERFAMILY SSF50129 4 143 1.43E-39 T 22-04-2016 IPR011032 GroES-like PP4_RS19980 03df2d218f1b54b9c8e7bbfba938ea18 333 SMART SM00829 19 331 2.5E-6 T 22-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 PP4_RS19980 03df2d218f1b54b9c8e7bbfba938ea18 333 SUPERFAMILY SSF51735 124 296 3.27E-51 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS19980 03df2d218f1b54b9c8e7bbfba938ea18 333 Pfam PF16884 N-terminal domain of oxidoreductase 6 113 2.8E-39 T 22-04-2016 PP4_RS11790 47672db6131e84f006791cc0ff61fe96 588 PANTHER PTHR11365 4 538 2.1E-52 T 22-04-2016 PP4_RS11790 47672db6131e84f006791cc0ff61fe96 588 Pfam PF02538 Hydantoinase B/oxoprolinase 5 533 3.4E-141 T 22-04-2016 IPR003692 Hydantoinase B/oxoprolinase GO:0003824 PP4_RS16655 cf1155672e27545204dde9df0322510d 357 SUPERFAMILY SSF53850 56 257 1.16E-28 T 22-04-2016 PP4_RS16655 cf1155672e27545204dde9df0322510d 357 Pfam PF09084 NMT1/THI5 like 89 255 1.5E-9 T 22-04-2016 IPR015168 SsuA/THI5-like PP4_RS16655 cf1155672e27545204dde9df0322510d 357 Gene3D G3DSA:3.40.190.10 123 244 9.0E-16 T 22-04-2016 PP4_RS16655 cf1155672e27545204dde9df0322510d 357 PANTHER PTHR30024:SF1 6 281 1.2E-18 T 22-04-2016 PP4_RS16655 cf1155672e27545204dde9df0322510d 357 PANTHER PTHR30024 6 281 1.2E-18 T 22-04-2016 PP4_RS13290 fa6525c75fe3a5de026a9c68ca9db9e0 295 Pfam PF13411 MerR HTH family regulatory protein 12 78 2.3E-15 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS13290 fa6525c75fe3a5de026a9c68ca9db9e0 295 SUPERFAMILY SSF46955 12 89 2.61E-17 T 22-04-2016 IPR009061 Putative DNA-binding domain PP4_RS13290 fa6525c75fe3a5de026a9c68ca9db9e0 295 PANTHER PTHR30204 2 95 3.3E-32 T 22-04-2016 PP4_RS13290 fa6525c75fe3a5de026a9c68ca9db9e0 295 Gene3D G3DSA:1.10.1660.10 13 95 1.9E-19 T 22-04-2016 PP4_RS13290 fa6525c75fe3a5de026a9c68ca9db9e0 295 SMART SM00422 10 79 4.2E-21 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS13290 fa6525c75fe3a5de026a9c68ca9db9e0 295 PANTHER PTHR30204:SF19 2 95 3.3E-32 T 22-04-2016 PP4_RS21185 e5f311499cf76eefd2885f41e60666ac 224 SUPERFAMILY SSF53067 4 105 7.34E-29 T 22-04-2016 PP4_RS21185 e5f311499cf76eefd2885f41e60666ac 224 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 4 215 2.3E-64 T 22-04-2016 IPR022496 tRNA threonylcarbamoyl adenosine modification protein YeaZ GO:0002949 PP4_RS21185 e5f311499cf76eefd2885f41e60666ac 224 Gene3D G3DSA:3.30.420.40 4 132 4.9E-43 T 22-04-2016 PP4_RS21185 e5f311499cf76eefd2885f41e60666ac 224 SUPERFAMILY SSF53067 111 213 1.81E-23 T 22-04-2016 PP4_RS21185 e5f311499cf76eefd2885f41e60666ac 224 PANTHER PTHR11735 1 137 7.9E-56 T 22-04-2016 PP4_RS21185 e5f311499cf76eefd2885f41e60666ac 224 Pfam PF00814 Glycoprotease family 30 150 4.5E-29 T 22-04-2016 IPR000905 Gcp-like domain KEGG: 00564+2.3.1.23|MetaCyc: PWY-5353|MetaCyc: PWY-5368|MetaCyc: PWY-5995|MetaCyc: PWY-6433|MetaCyc: PWY-6803|MetaCyc: PWY-6958|MetaCyc: PWY-7409|MetaCyc: PWY-7416|MetaCyc: PWY-7470|MetaCyc: PWY-7618 PP4_RS21185 e5f311499cf76eefd2885f41e60666ac 224 PANTHER PTHR11735:SF11 1 137 7.9E-56 T 22-04-2016 PP4_RS22320 d5b235a24afb825885ba59f1ed348d28 404 SUPERFAMILY SSF53383 5 390 7.48E-109 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS22320 d5b235a24afb825885ba59f1ed348d28 404 PANTHER PTHR11601:SF45 4 404 2.4E-230 T 22-04-2016 PP4_RS22320 d5b235a24afb825885ba59f1ed348d28 404 PIRSF PIRSF005572 2 384 1.1E-129 T 22-04-2016 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250 PP4_RS22320 d5b235a24afb825885ba59f1ed348d28 404 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 197 216 - T 22-04-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site PP4_RS22320 d5b235a24afb825885ba59f1ed348d28 404 Pfam PF00266 Aminotransferase class-V 5 368 2.8E-85 T 22-04-2016 IPR000192 Aminotransferase class V domain PP4_RS22320 d5b235a24afb825885ba59f1ed348d28 404 Gene3D G3DSA:3.40.640.10 17 253 1.4E-93 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS22320 d5b235a24afb825885ba59f1ed348d28 404 Gene3D G3DSA:3.90.1150.10 254 374 2.5E-51 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS22320 d5b235a24afb825885ba59f1ed348d28 404 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 1 395 52.515 T 22-04-2016 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250|UniPathway: UPA00266 PP4_RS22320 d5b235a24afb825885ba59f1ed348d28 404 PANTHER PTHR11601 4 404 2.4E-230 T 22-04-2016 PP4_RS22320 d5b235a24afb825885ba59f1ed348d28 404 TIGRFAM TIGR02006 IscS: cysteine desulfurase IscS 1 404 2.9E-225 T 22-04-2016 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-6823|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7250|UniPathway: UPA00266 PP4_RS03670 43634d4a455c08ba9a5e9b840a2160d8 65 Pfam PF04328 Protein of unknown function (DUF466) 5 65 2.7E-30 T 22-04-2016 IPR007423 Protein of unknown function DUF466 PP4_RS03670 43634d4a455c08ba9a5e9b840a2160d8 65 PANTHER PTHR38453:SF2 1 65 3.8E-39 T 22-04-2016 PP4_RS03670 43634d4a455c08ba9a5e9b840a2160d8 65 PANTHER PTHR38453 1 65 3.8E-39 T 22-04-2016 PP4_RS13745 f56904c7328366e79e14ba1126621323 478 Gene3D G3DSA:3.40.605.10 3 233 7.7E-53 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS13745 f56904c7328366e79e14ba1126621323 478 SUPERFAMILY SSF53720 3 446 3.27E-107 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS13745 f56904c7328366e79e14ba1126621323 478 PANTHER PTHR11699 2 477 5.2E-126 T 22-04-2016 PP4_RS13745 f56904c7328366e79e14ba1126621323 478 PIRSF PIRSF036492 2 476 1.6E-141 T 22-04-2016 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0004030|GO:0006081|GO:0055114 PP4_RS13745 f56904c7328366e79e14ba1126621323 478 Pfam PF00171 Aldehyde dehydrogenase family 4 445 5.4E-86 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PP4_RS13745 f56904c7328366e79e14ba1126621323 478 Gene3D G3DSA:3.40.309.10 234 425 3.2E-45 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PP4_RS13745 f56904c7328366e79e14ba1126621323 478 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 219 226 - T 22-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 PP4_RS03560 9252f9eb9a4ef71788db29435cfe7391 555 TIGRFAM TIGR00066 g_glut_trans: gamma-glutamyltransferase 31 546 1.8E-155 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PP4_RS03560 9252f9eb9a4ef71788db29435cfe7391 555 SUPERFAMILY SSF56235 24 551 3.28E-172 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PP4_RS03560 9252f9eb9a4ef71788db29435cfe7391 555 PANTHER PTHR11686 29 550 2.2E-198 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PP4_RS03560 9252f9eb9a4ef71788db29435cfe7391 555 ProSitePatterns PS00462 Gamma-glutamyltranspeptidase signature. 363 387 - T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PP4_RS03560 9252f9eb9a4ef71788db29435cfe7391 555 Pfam PF01019 Gamma-glutamyltranspeptidase 44 549 6.1E-170 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PP4_RS03560 9252f9eb9a4ef71788db29435cfe7391 555 PANTHER PTHR11686:SF9 29 550 2.2E-198 T 22-04-2016 PP4_RS03560 9252f9eb9a4ef71788db29435cfe7391 555 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 123 141 2.0E-73 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PP4_RS03560 9252f9eb9a4ef71788db29435cfe7391 555 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 141 160 2.0E-73 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PP4_RS03560 9252f9eb9a4ef71788db29435cfe7391 555 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 363 381 2.0E-73 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PP4_RS03560 9252f9eb9a4ef71788db29435cfe7391 555 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 428 443 2.0E-73 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PP4_RS03560 9252f9eb9a4ef71788db29435cfe7391 555 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 265 284 2.0E-73 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PP4_RS03560 9252f9eb9a4ef71788db29435cfe7391 555 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 51 76 2.0E-73 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PP4_RS03560 9252f9eb9a4ef71788db29435cfe7391 555 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 387 405 2.0E-73 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PP4_RS03560 9252f9eb9a4ef71788db29435cfe7391 555 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 452 469 2.0E-73 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PP4_RS03560 9252f9eb9a4ef71788db29435cfe7391 555 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 235 251 2.0E-73 T 22-04-2016 IPR000101 Gamma-glutamyltranspeptidase GO:0003840|GO:0006749 KEGG: 00430+2.3.2.2|KEGG: 00460+2.3.2.2|KEGG: 00480+2.3.2.2+3.4.19.13|MetaCyc: PWY-4041|MetaCyc: PWY-5826 PP4_RS17865 0f560ab9a4f17f1e641dcab0056e2089 546 PANTHER PTHR24096 13 543 5.6E-267 T 22-04-2016 PP4_RS17865 0f560ab9a4f17f1e641dcab0056e2089 546 ProSitePatterns PS00455 Putative AMP-binding domain signature. 185 196 - T 22-04-2016 IPR020845 AMP-binding, conserved site PP4_RS17865 0f560ab9a4f17f1e641dcab0056e2089 546 SUPERFAMILY SSF56801 17 544 3.92E-130 T 22-04-2016 PP4_RS17865 0f560ab9a4f17f1e641dcab0056e2089 546 Gene3D G3DSA:3.40.50.980 194 352 3.3E-34 T 22-04-2016 PP4_RS17865 0f560ab9a4f17f1e641dcab0056e2089 546 Gene3D G3DSA:3.40.50.980 170 193 2.5E-31 T 22-04-2016 PP4_RS17865 0f560ab9a4f17f1e641dcab0056e2089 546 Gene3D G3DSA:3.40.50.980 20 131 2.5E-31 T 22-04-2016 PP4_RS17865 0f560ab9a4f17f1e641dcab0056e2089 546 Gene3D G3DSA:3.30.300.30 441 544 4.6E-25 T 22-04-2016 PP4_RS17865 0f560ab9a4f17f1e641dcab0056e2089 546 PANTHER PTHR24096:SF136 13 543 5.6E-267 T 22-04-2016 PP4_RS17865 0f560ab9a4f17f1e641dcab0056e2089 546 Pfam PF00501 AMP-binding enzyme 28 446 3.9E-88 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PP4_RS17865 0f560ab9a4f17f1e641dcab0056e2089 546 Pfam PF13193 AMP-binding enzyme C-terminal domain 456 535 4.0E-18 T 22-04-2016 IPR025110 AMP-binding enzyme C-terminal domain PP4_RS17865 0f560ab9a4f17f1e641dcab0056e2089 546 Gene3D G3DSA:2.30.38.10 365 440 1.5E-19 T 22-04-2016 PP4_RS12075 d06b5ebbe7d3c39f363118d80c1c5ed2 159 PANTHER PTHR30093 1 62 6.5E-12 T 22-04-2016 PP4_RS12075 d06b5ebbe7d3c39f363118d80c1c5ed2 159 SUPERFAMILY SSF54523 10 115 8.37E-15 T 22-04-2016 PP4_RS12075 d06b5ebbe7d3c39f363118d80c1c5ed2 159 Pfam PF07963 Prokaryotic N-terminal methylation motif 8 26 1.2E-5 T 22-04-2016 IPR012902 Prokaryotic N-terminal methylation site PP4_RS12075 d06b5ebbe7d3c39f363118d80c1c5ed2 159 Gene3D G3DSA:3.30.700.10 10 80 8.3E-4 T 22-04-2016 PP4_RS12075 d06b5ebbe7d3c39f363118d80c1c5ed2 159 PANTHER PTHR30093:SF3 1 62 6.5E-12 T 22-04-2016 PP4_RS12075 d06b5ebbe7d3c39f363118d80c1c5ed2 159 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 8 28 - T 22-04-2016 IPR012902 Prokaryotic N-terminal methylation site PP4_RS12075 d06b5ebbe7d3c39f363118d80c1c5ed2 159 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 8 30 4.4E-6 T 22-04-2016 IPR012902 Prokaryotic N-terminal methylation site PP4_RS14615 52cb4d6898a294a162c5cb87fe59851c 295 Pfam PF02682 Allophanate hydrolase subunit 1 11 225 2.3E-48 T 22-04-2016 IPR003833 Carboxyltransferase domain, subdomain C and D PP4_RS14615 52cb4d6898a294a162c5cb87fe59851c 295 Gene3D G3DSA:2.40.100.10 97 261 3.8E-43 T 22-04-2016 IPR029000 Cyclophilin-like domain PP4_RS14615 52cb4d6898a294a162c5cb87fe59851c 295 PANTHER PTHR34698 124 277 3.4E-84 T 22-04-2016 PP4_RS14615 52cb4d6898a294a162c5cb87fe59851c 295 PANTHER PTHR34698 6 107 3.4E-84 T 22-04-2016 PP4_RS14615 52cb4d6898a294a162c5cb87fe59851c 295 SUPERFAMILY SSF160467 11 101 2.22E-13 T 22-04-2016 PP4_RS14615 52cb4d6898a294a162c5cb87fe59851c 295 SMART SM00796 10 228 7.7E-74 T 22-04-2016 IPR003833 Carboxyltransferase domain, subdomain C and D PP4_RS14615 52cb4d6898a294a162c5cb87fe59851c 295 Gene3D G3DSA:3.30.1360.40 11 86 3.9E-9 T 22-04-2016 IPR024946 Arginine repressor C-terminal-like domain PP4_RS14615 52cb4d6898a294a162c5cb87fe59851c 295 SUPERFAMILY SSF50891 97 253 1.74E-26 T 22-04-2016 IPR029000 Cyclophilin-like domain PP4_RS14615 52cb4d6898a294a162c5cb87fe59851c 295 PANTHER PTHR34698:SF2 124 277 3.4E-84 T 22-04-2016 PP4_RS14615 52cb4d6898a294a162c5cb87fe59851c 295 PANTHER PTHR34698:SF2 6 107 3.4E-84 T 22-04-2016 PP4_RS13575 a3bc6ee7147f568ba538beaf4ff19fbe 368 SUPERFAMILY SSF51412 310 348 1.98E-49 T 22-04-2016 PP4_RS13575 a3bc6ee7147f568ba538beaf4ff19fbe 368 SUPERFAMILY SSF51412 7 250 1.98E-49 T 22-04-2016 PP4_RS13575 a3bc6ee7147f568ba538beaf4ff19fbe 368 Gene3D G3DSA:3.20.20.70 6 251 1.9E-53 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS13575 a3bc6ee7147f568ba538beaf4ff19fbe 368 Gene3D G3DSA:3.20.20.70 283 337 1.9E-53 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS13575 a3bc6ee7147f568ba538beaf4ff19fbe 368 Pfam PF03060 Nitronate monooxygenase 8 343 1.7E-60 T 22-04-2016 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 PP4_RS13575 a3bc6ee7147f568ba538beaf4ff19fbe 368 PANTHER PTHR32332 271 358 2.8E-71 T 22-04-2016 PP4_RS13575 a3bc6ee7147f568ba538beaf4ff19fbe 368 PANTHER PTHR32332 5 239 2.8E-71 T 22-04-2016 PP4_RS13575 a3bc6ee7147f568ba538beaf4ff19fbe 368 PANTHER PTHR32332:SF20 271 358 2.8E-71 T 22-04-2016 PP4_RS13575 a3bc6ee7147f568ba538beaf4ff19fbe 368 PANTHER PTHR32332:SF20 5 239 2.8E-71 T 22-04-2016 PP4_RS24530 63f71dfa62cfbcd598299d362ab0e06f 313 PIRSF PIRSF028757 11 312 2.3E-75 T 22-04-2016 IPR003507 Peptidase family S66 PP4_RS24530 63f71dfa62cfbcd598299d362ab0e06f 313 Gene3D G3DSA:3.50.30.60 178 304 1.1E-39 T 22-04-2016 IPR027461 LD-carboxypeptidase A, C-terminal domain PP4_RS24530 63f71dfa62cfbcd598299d362ab0e06f 313 Pfam PF02016 LD-carboxypeptidase 22 297 6.3E-77 T 22-04-2016 IPR003507 Peptidase family S66 PP4_RS24530 63f71dfa62cfbcd598299d362ab0e06f 313 PANTHER PTHR30237 10 308 3.8E-87 T 22-04-2016 PP4_RS24530 63f71dfa62cfbcd598299d362ab0e06f 313 SUPERFAMILY SSF52317 11 162 1.14E-41 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS24530 63f71dfa62cfbcd598299d362ab0e06f 313 PANTHER PTHR30237:SF2 10 308 3.8E-87 T 22-04-2016 PP4_RS24530 63f71dfa62cfbcd598299d362ab0e06f 313 SUPERFAMILY SSF141986 175 303 2.35E-38 T 22-04-2016 IPR027461 LD-carboxypeptidase A, C-terminal domain PP4_RS24530 63f71dfa62cfbcd598299d362ab0e06f 313 Gene3D G3DSA:3.40.50.10740 7 156 2.9E-47 T 22-04-2016 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal domain PP4_RS08415 20ae950f318dbcb53440ad4a1c034145 231 PANTHER PTHR11260 14 230 4.9E-62 T 22-04-2016 PP4_RS08415 20ae950f318dbcb53440ad4a1c034145 231 Gene3D G3DSA:1.20.1050.10 102 225 1.0E-37 T 22-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like PP4_RS08415 20ae950f318dbcb53440ad4a1c034145 231 SUPERFAMILY SSF47616 102 229 5.46E-28 T 22-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like PP4_RS08415 20ae950f318dbcb53440ad4a1c034145 231 SUPERFAMILY SSF52833 12 102 2.6E-20 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS08415 20ae950f318dbcb53440ad4a1c034145 231 Gene3D G3DSA:3.40.30.10 8 101 2.8E-27 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS08415 20ae950f318dbcb53440ad4a1c034145 231 Pfam PF00043 Glutathione S-transferase, C-terminal domain 136 221 9.3E-8 T 22-04-2016 IPR004046 Glutathione S-transferase, C-terminal PP4_RS08415 20ae950f318dbcb53440ad4a1c034145 231 Pfam PF02798 Glutathione S-transferase, N-terminal domain 21 99 4.1E-12 T 22-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 PP4_RS08415 20ae950f318dbcb53440ad4a1c034145 231 PANTHER PTHR11260:SF178 14 230 4.9E-62 T 22-04-2016 PP4_RS24205 a0e49be4ef55cf756b819552c1fcb434 217 SMART SM00283 7 215 1.3E-9 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS24205 a0e49be4ef55cf756b819552c1fcb434 217 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 47 191 2.5E-32 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS24205 a0e49be4ef55cf756b819552c1fcb434 217 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 83 110 1.7E-17 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS24205 a0e49be4ef55cf756b819552c1fcb434 217 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 112 141 1.7E-17 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS24205 a0e49be4ef55cf756b819552c1fcb434 217 PANTHER PTHR32089 12 189 3.2E-40 T 22-04-2016 PP4_RS24205 a0e49be4ef55cf756b819552c1fcb434 217 SUPERFAMILY SSF58104 11 203 5.36E-44 T 22-04-2016 PP4_RS24205 a0e49be4ef55cf756b819552c1fcb434 217 Gene3D G3DSA:1.10.287.950 9 204 2.1E-42 T 22-04-2016 PP4_RS07140 dc94fa92e39f88ebe63a8d9ae12b00de 306 Pfam PF13489 Methyltransferase domain 24 169 5.4E-16 T 22-04-2016 PP4_RS07140 dc94fa92e39f88ebe63a8d9ae12b00de 306 Gene3D G3DSA:3.40.50.150 25 175 5.5E-24 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS07140 dc94fa92e39f88ebe63a8d9ae12b00de 306 SUPERFAMILY SSF53335 20 181 2.46E-23 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS20105 fbaac8743f7db3473e7e1ddb05ac226a 423 PANTHER PTHR30250 3 412 5.2E-47 T 22-04-2016 PP4_RS20105 fbaac8743f7db3473e7e1ddb05ac226a 423 PANTHER PTHR30250:SF9 3 412 5.2E-47 T 22-04-2016 PP4_RS20105 fbaac8743f7db3473e7e1ddb05ac226a 423 Pfam PF13440 Polysaccharide biosynthesis protein 46 330 3.1E-15 T 22-04-2016 PP4_RS17710 5cd6e25ba66c7de964789af1db9d5107 284 PANTHER PTHR10025 1 283 2.2E-168 T 22-04-2016 PP4_RS17710 5cd6e25ba66c7de964789af1db9d5107 284 SUPERFAMILY SSF53223 1 122 6.62E-39 T 22-04-2016 PP4_RS17710 5cd6e25ba66c7de964789af1db9d5107 284 Gene3D G3DSA:3.40.192.10 7 140 3.8E-50 T 22-04-2016 PP4_RS17710 5cd6e25ba66c7de964789af1db9d5107 284 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 121 3.2E-38 T 22-04-2016 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 PP4_RS17710 5cd6e25ba66c7de964789af1db9d5107 284 SUPERFAMILY SSF51735 123 282 1.18E-52 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS17710 5cd6e25ba66c7de964789af1db9d5107 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 34 56 2.4E-80 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 PP4_RS17710 5cd6e25ba66c7de964789af1db9d5107 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 110 131 2.4E-80 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 PP4_RS17710 5cd6e25ba66c7de964789af1db9d5107 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 75 102 2.4E-80 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 PP4_RS17710 5cd6e25ba66c7de964789af1db9d5107 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 204 233 2.4E-80 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 PP4_RS17710 5cd6e25ba66c7de964789af1db9d5107 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 256 274 2.4E-80 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 PP4_RS17710 5cd6e25ba66c7de964789af1db9d5107 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 239 255 2.4E-80 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 PP4_RS17710 5cd6e25ba66c7de964789af1db9d5107 284 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 155 175 2.4E-80 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 PP4_RS17710 5cd6e25ba66c7de964789af1db9d5107 284 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 124 281 5.1E-67 T 22-04-2016 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 PP4_RS17710 5cd6e25ba66c7de964789af1db9d5107 284 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 283 37.735 T 22-04-2016 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0003824|GO:0004488|GO:0009396|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|UniPathway: UPA00193 PP4_RS17710 5cd6e25ba66c7de964789af1db9d5107 284 Gene3D G3DSA:3.40.50.720 141 264 1.7E-49 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS06120 7bdf0b6770ce0fdccf2f5fe39cd97ae3 537 PIRSF PIRSF006060 1 458 5.9E-79 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS06120 7bdf0b6770ce0fdccf2f5fe39cd97ae3 537 Pfam PF13520 Amino acid permease 9 454 2.3E-46 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS06120 7bdf0b6770ce0fdccf2f5fe39cd97ae3 537 PANTHER PTHR11785 3 417 1.6E-248 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS06120 7bdf0b6770ce0fdccf2f5fe39cd97ae3 537 PANTHER PTHR11785 479 537 1.6E-248 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS06120 7bdf0b6770ce0fdccf2f5fe39cd97ae3 537 PANTHER PTHR11785:SF358 3 417 1.6E-248 T 22-04-2016 PP4_RS06120 7bdf0b6770ce0fdccf2f5fe39cd97ae3 537 PANTHER PTHR11785:SF358 479 537 1.6E-248 T 22-04-2016 PP4_RS03940 4b6ace10deda81b0c2ba17e3e3369f92 796 SUPERFAMILY SSF56935 139 796 1.14E-122 T 22-04-2016 PP4_RS03940 4b6ace10deda81b0c2ba17e3e3369f92 796 PANTHER PTHR32552 105 120 0.0 T 22-04-2016 PP4_RS03940 4b6ace10deda81b0c2ba17e3e3369f92 796 PANTHER PTHR32552 136 796 0.0 T 22-04-2016 PP4_RS03940 4b6ace10deda81b0c2ba17e3e3369f92 796 PANTHER PTHR32552:SF6 105 120 0.0 T 22-04-2016 PP4_RS03940 4b6ace10deda81b0c2ba17e3e3369f92 796 PANTHER PTHR32552:SF6 136 796 0.0 T 22-04-2016 PP4_RS03940 4b6ace10deda81b0c2ba17e3e3369f92 796 Gene3D G3DSA:2.40.170.20 269 796 6.8E-145 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS03940 4b6ace10deda81b0c2ba17e3e3369f92 796 Pfam PF07715 TonB-dependent Receptor Plug Domain 144 242 3.0E-18 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS03940 4b6ace10deda81b0c2ba17e3e3369f92 796 SMART SM00965 57 107 4.0E-9 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS03940 4b6ace10deda81b0c2ba17e3e3369f92 796 Gene3D G3DSA:2.170.130.10 110 251 3.0E-30 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS03940 4b6ace10deda81b0c2ba17e3e3369f92 796 Pfam PF00593 TonB dependent receptor 552 791 1.0E-38 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS03940 4b6ace10deda81b0c2ba17e3e3369f92 796 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 146 796 1.6E-114 T 22-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 PP4_RS24880 eb5ba46fb45e78379cfd3a98e65ac8e7 376 PANTHER PTHR30483:SF20 7 373 8.5E-121 T 22-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 PP4_RS24880 eb5ba46fb45e78379cfd3a98e65ac8e7 376 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 333 348 2.1E-22 T 22-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 PP4_RS24880 eb5ba46fb45e78379cfd3a98e65ac8e7 376 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 29 45 2.1E-22 T 22-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 PP4_RS24880 eb5ba46fb45e78379cfd3a98e65ac8e7 376 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 282 295 2.1E-22 T 22-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 PP4_RS24880 eb5ba46fb45e78379cfd3a98e65ac8e7 376 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 70 88 2.1E-22 T 22-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 PP4_RS24880 eb5ba46fb45e78379cfd3a98e65ac8e7 376 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 51 67 2.1E-22 T 22-04-2016 IPR000709 Leu/Ile/Val-binding protein GO:0006865 PP4_RS24880 eb5ba46fb45e78379cfd3a98e65ac8e7 376 SUPERFAMILY SSF53822 28 371 1.02E-90 T 22-04-2016 IPR028082 Periplasmic binding protein-like I PP4_RS24880 eb5ba46fb45e78379cfd3a98e65ac8e7 376 Gene3D G3DSA:3.40.50.2300 28 226 7.2E-68 T 22-04-2016 PP4_RS24880 eb5ba46fb45e78379cfd3a98e65ac8e7 376 Pfam PF13458 Periplasmic binding protein 29 368 1.4E-64 T 22-04-2016 IPR028081 Leucine-binding protein domain PP4_RS24880 eb5ba46fb45e78379cfd3a98e65ac8e7 376 PANTHER PTHR30483 7 373 8.5E-121 T 22-04-2016 PP4_RS01900 a263236363d3fd4b7b7e582d03ef7276 268 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 21 231 3.8E-66 T 22-04-2016 IPR010440 Lipopolysaccharide kinase GO:0005524|GO:0016020|GO:0016773 PP4_RS01900 a263236363d3fd4b7b7e582d03ef7276 268 SUPERFAMILY SSF56112 35 227 1.85E-11 T 22-04-2016 IPR011009 Protein kinase-like domain PP4_RS01900 a263236363d3fd4b7b7e582d03ef7276 268 PIRSF PIRSF037318 2 266 4.2E-126 T 22-04-2016 IPR017172 Lipopolysaccharide core heptose(I) kinase rfaP GO:0009103|GO:0016301 KEGG: 00520+2.7.1.-|KEGG: 00540+2.7.1.-|KEGG: 00680+2.7.1.-|KEGG: 00900+2.7.1.-|UniPathway: UPA00958 PP4_RS04910 17acc8a6caf90b8a5ca1c45afde79c06 343 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 10 164 4.9E-38 T 22-04-2016 IPR017516 AbrB duplication PP4_RS04910 17acc8a6caf90b8a5ca1c45afde79c06 343 TIGRFAM TIGR03082 Gneg_AbrB_dup: membrane protein AbrB duplication 183 338 4.3E-41 T 22-04-2016 IPR017516 AbrB duplication PP4_RS04910 17acc8a6caf90b8a5ca1c45afde79c06 343 PIRSF PIRSF038991 2 343 1.4E-69 T 22-04-2016 IPR007820 AbrB family GO:0010468|GO:0016021 PP4_RS04910 17acc8a6caf90b8a5ca1c45afde79c06 343 Pfam PF05145 Putative ammonia monooxygenase 32 338 9.3E-86 T 22-04-2016 IPR007820 AbrB family GO:0010468|GO:0016021 PP4_RS04910 17acc8a6caf90b8a5ca1c45afde79c06 343 PANTHER PTHR38457:SF1 1 342 6.5E-74 T 22-04-2016 PP4_RS04910 17acc8a6caf90b8a5ca1c45afde79c06 343 PANTHER PTHR38457 1 342 6.5E-74 T 22-04-2016 PP4_RS18485 fc484ee14abada73c92019f8b53f8028 235 Pfam PF10099 Anti-sigma-K factor rskA 66 227 2.4E-20 T 22-04-2016 IPR018764 Anti-sigma K factor RskA GO:0005886|GO:0016021 PP4_RS25870 cf537eecee6540f4c966ad85354e270c 118 SUPERFAMILY SSF47413 54 115 5.3E-5 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS25870 cf537eecee6540f4c966ad85354e270c 118 Gene3D G3DSA:1.10.260.40 42 115 8.2E-12 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS25870 cf537eecee6540f4c966ad85354e270c 118 PANTHER PTHR40455 3 115 2.0E-16 T 22-04-2016 PP4_RS25870 cf537eecee6540f4c966ad85354e270c 118 PANTHER PTHR40455:SF1 3 115 2.0E-16 T 22-04-2016 PP4_RS01240 de4000d6fdcce18c77b41c9dd66a062f 393 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 126 209 7.6E-10 T 22-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 PP4_RS01240 de4000d6fdcce18c77b41c9dd66a062f 393 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 236 368 3.3E-21 T 22-04-2016 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain PP4_RS01240 de4000d6fdcce18c77b41c9dd66a062f 393 SUPERFAMILY SSF47203 223 388 2.09E-24 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS01240 de4000d6fdcce18c77b41c9dd66a062f 393 SUPERFAMILY SSF56645 16 217 1.15E-45 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 PP4_RS01240 de4000d6fdcce18c77b41c9dd66a062f 393 PIRSF PIRSF016578 2 389 3.3E-38 T 22-04-2016 PP4_RS01240 de4000d6fdcce18c77b41c9dd66a062f 393 PANTHER PTHR10909:SF300 2 386 2.7E-171 T 22-04-2016 PP4_RS01240 de4000d6fdcce18c77b41c9dd66a062f 393 PANTHER PTHR10909 2 386 2.7E-171 T 22-04-2016 PP4_RS01240 de4000d6fdcce18c77b41c9dd66a062f 393 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 19 115 7.5E-10 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS01240 de4000d6fdcce18c77b41c9dd66a062f 393 Gene3D G3DSA:2.40.110.10 134 210 6.5E-21 T 22-04-2016 PP4_RS01240 de4000d6fdcce18c77b41c9dd66a062f 393 Gene3D G3DSA:1.20.140.10 211 389 5.5E-57 T 22-04-2016 PP4_RS01240 de4000d6fdcce18c77b41c9dd66a062f 393 TIGRFAM TIGR04022 sulfur_SfnB: sulfur acquisition oxidoreductase, SfnB family 5 392 1.1E-187 T 22-04-2016 IPR023922 Sulphate-starvation-induced SfnB PP4_RS01240 de4000d6fdcce18c77b41c9dd66a062f 393 Gene3D G3DSA:1.10.540.10 5 109 1.1E-29 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS06680 9a9ae47082dfca402dfd3187fc8667f8 255 SMART SM00342 166 249 4.3E-25 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS06680 9a9ae47082dfca402dfd3187fc8667f8 255 Gene3D G3DSA:2.60.120.10 15 77 2.3E-7 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS06680 9a9ae47082dfca402dfd3187fc8667f8 255 SUPERFAMILY SSF46689 202 251 5.82E-10 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS06680 9a9ae47082dfca402dfd3187fc8667f8 255 PANTHER PTHR11019 10 251 1.4E-55 T 22-04-2016 PP4_RS06680 9a9ae47082dfca402dfd3187fc8667f8 255 Pfam PF12833 Helix-turn-helix domain 172 250 1.9E-22 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS06680 9a9ae47082dfca402dfd3187fc8667f8 255 Gene3D G3DSA:1.10.10.60 203 251 1.8E-13 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS06680 9a9ae47082dfca402dfd3187fc8667f8 255 Pfam PF14525 AraC-binding-like domain 16 136 1.9E-6 T 22-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PP4_RS06680 9a9ae47082dfca402dfd3187fc8667f8 255 SUPERFAMILY SSF51182 18 173 5.87E-8 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS06680 9a9ae47082dfca402dfd3187fc8667f8 255 PANTHER PTHR11019:SF85 10 251 1.4E-55 T 22-04-2016 PP4_RS06680 9a9ae47082dfca402dfd3187fc8667f8 255 Gene3D G3DSA:1.10.10.60 158 202 3.6E-12 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS17440 9543e35d105396810ffd091ce8866a1f 439 PRINTS PR00344 Bacterial sensor protein C-terminal signature 398 416 2.3E-8 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS17440 9543e35d105396810ffd091ce8866a1f 439 PRINTS PR00344 Bacterial sensor protein C-terminal signature 422 435 2.3E-8 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS17440 9543e35d105396810ffd091ce8866a1f 439 PRINTS PR00344 Bacterial sensor protein C-terminal signature 367 381 2.3E-8 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS17440 9543e35d105396810ffd091ce8866a1f 439 Pfam PF00672 HAMP domain 158 222 1.1E-6 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS17440 9543e35d105396810ffd091ce8866a1f 439 SUPERFAMILY SSF55874 300 436 1.57E-27 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS17440 9543e35d105396810ffd091ce8866a1f 439 SMART SM00387 332 438 5.9E-22 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS17440 9543e35d105396810ffd091ce8866a1f 439 Gene3D G3DSA:3.30.565.10 314 437 6.1E-26 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS17440 9543e35d105396810ffd091ce8866a1f 439 PANTHER PTHR24423:SF543 30 61 3.0E-72 T 22-04-2016 PP4_RS17440 9543e35d105396810ffd091ce8866a1f 439 PANTHER PTHR24423:SF543 171 436 3.0E-72 T 22-04-2016 PP4_RS17440 9543e35d105396810ffd091ce8866a1f 439 SUPERFAMILY SSF47384 212 281 8.04E-6 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS17440 9543e35d105396810ffd091ce8866a1f 439 PANTHER PTHR24423 30 61 3.0E-72 T 22-04-2016 PP4_RS17440 9543e35d105396810ffd091ce8866a1f 439 PANTHER PTHR24423 171 436 3.0E-72 T 22-04-2016 PP4_RS17440 9543e35d105396810ffd091ce8866a1f 439 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 335 436 1.5E-12 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS08995 2dc09795936515a105e8275f6d3fa0a1 231 ProSitePatterns PS01273 Coenzyme A transferases signature 1. 18 33 - T 22-04-2016 IPR004163 Coenzyme A transferase binding site GO:0008152|GO:0008410 PP4_RS08995 2dc09795936515a105e8275f6d3fa0a1 231 Pfam PF01144 Coenzyme A transferase 7 218 5.3E-73 T 22-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 PP4_RS08995 2dc09795936515a105e8275f6d3fa0a1 231 Gene3D G3DSA:3.40.1080.10 3 217 3.9E-88 T 22-04-2016 PP4_RS08995 2dc09795936515a105e8275f6d3fa0a1 231 SUPERFAMILY SSF100950 2 221 1.62E-78 T 22-04-2016 PP4_RS08995 2dc09795936515a105e8275f6d3fa0a1 231 SMART SM00882 6 219 3.6E-85 T 22-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 PP4_RS08995 2dc09795936515a105e8275f6d3fa0a1 231 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 1 221 7.0E-125 T 22-04-2016 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 PP4_RS08995 2dc09795936515a105e8275f6d3fa0a1 231 PANTHER PTHR13707 1 223 2.8E-97 T 22-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 PP4_RS14500 56d75ccf7ac558eaf6c1e78a0ff38447 348 PIRSF PIRSF031982 2 332 2.1E-102 T 22-04-2016 IPR016986 Uncharacterised conserved protein UCP031982, alpha/beta hydrolase, XabL PP4_RS14500 56d75ccf7ac558eaf6c1e78a0ff38447 348 SUPERFAMILY SSF53474 215 300 2.94E-30 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS14500 56d75ccf7ac558eaf6c1e78a0ff38447 348 SUPERFAMILY SSF53474 53 176 2.94E-30 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS14500 56d75ccf7ac558eaf6c1e78a0ff38447 348 Gene3D G3DSA:3.40.50.1820 24 176 1.3E-39 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS14500 56d75ccf7ac558eaf6c1e78a0ff38447 348 Gene3D G3DSA:3.40.50.1820 215 330 1.3E-39 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS04310 c7305a57a9c72e402eadb2d51ea8f032 448 Pfam PF08245 Mur ligase middle domain 114 285 4.1E-25 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PP4_RS04310 c7305a57a9c72e402eadb2d51ea8f032 448 PANTHER PTHR23135:SF2 1 444 9.9E-158 T 22-04-2016 PP4_RS04310 c7305a57a9c72e402eadb2d51ea8f032 448 SUPERFAMILY SSF51984 11 96 1.57E-13 T 22-04-2016 PP4_RS04310 c7305a57a9c72e402eadb2d51ea8f032 448 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 8 447 34.32 T 22-04-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PP4_RS04310 c7305a57a9c72e402eadb2d51ea8f032 448 Gene3D G3DSA:3.40.1190.10 98 305 1.1E-63 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PP4_RS04310 c7305a57a9c72e402eadb2d51ea8f032 448 SUPERFAMILY SSF53244 305 446 1.1E-45 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PP4_RS04310 c7305a57a9c72e402eadb2d51ea8f032 448 SUPERFAMILY SSF53623 99 303 2.62E-52 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PP4_RS04310 c7305a57a9c72e402eadb2d51ea8f032 448 Pfam PF02875 Mur ligase family, glutamate ligase domain 307 380 7.3E-7 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PP4_RS04310 c7305a57a9c72e402eadb2d51ea8f032 448 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 12 443 1.9E-120 T 22-04-2016 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387|UniPathway: UPA00219 PP4_RS04310 c7305a57a9c72e402eadb2d51ea8f032 448 Gene3D G3DSA:3.90.190.20 307 443 9.8E-48 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PP4_RS04310 c7305a57a9c72e402eadb2d51ea8f032 448 PANTHER PTHR23135 1 444 9.9E-158 T 22-04-2016 PP4_RS04310 c7305a57a9c72e402eadb2d51ea8f032 448 Gene3D G3DSA:3.40.50.720 11 95 6.8E-16 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS14960 37fc9ac4de460063633ea4a04b165b20 207 Hamap MF_01389 Urease accessory protein UreG [ureG]. 6 204 46.75 T 22-04-2016 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 PP4_RS14960 37fc9ac4de460063633ea4a04b165b20 207 Gene3D G3DSA:3.40.50.300 7 197 2.8E-20 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS14960 37fc9ac4de460063633ea4a04b165b20 207 TIGRFAM TIGR00101 ureG: urease accessory protein UreG 8 199 4.0E-101 T 22-04-2016 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 PP4_RS14960 37fc9ac4de460063633ea4a04b165b20 207 PIRSF PIRSF005624 2 203 3.9E-51 T 22-04-2016 PP4_RS14960 37fc9ac4de460063633ea4a04b165b20 207 SUPERFAMILY SSF52540 5 199 5.2E-37 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS14960 37fc9ac4de460063633ea4a04b165b20 207 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 10 179 1.1E-41 T 22-04-2016 IPR003495 CobW/HypB/UreG, nucleotide-binding domain PP4_RS14960 37fc9ac4de460063633ea4a04b165b20 207 PANTHER PTHR31715 5 203 4.4E-125 T 22-04-2016 IPR004400 Urease accessory protein UreG GO:0003924|GO:0006807|GO:0016151 PP4_RS03635 d9c5b9a4e6852044cf5f4be7f1c78336 235 PANTHER PTHR26402:SF432 175 235 5.2E-12 T 22-04-2016 PP4_RS03635 d9c5b9a4e6852044cf5f4be7f1c78336 235 Gene3D G3DSA:3.30.450.80 2 177 4.3E-35 T 22-04-2016 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain PP4_RS03635 d9c5b9a4e6852044cf5f4be7f1c78336 235 ProSitePatterns PS00622 LuxR-type HTH domain signature. 189 216 - T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS03635 d9c5b9a4e6852044cf5f4be7f1c78336 235 SMART SM00421 172 229 2.7E-15 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS03635 d9c5b9a4e6852044cf5f4be7f1c78336 235 SUPERFAMILY SSF46894 167 235 6.46E-15 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS03635 d9c5b9a4e6852044cf5f4be7f1c78336 235 Pfam PF00196 Bacterial regulatory proteins, luxR family 175 229 4.1E-14 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS03635 d9c5b9a4e6852044cf5f4be7f1c78336 235 Gene3D G3DSA:1.10.10.10 178 235 7.7E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS03635 d9c5b9a4e6852044cf5f4be7f1c78336 235 Pfam PF03472 Autoinducer binding domain 18 158 2.2E-28 T 22-04-2016 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain PP4_RS03635 d9c5b9a4e6852044cf5f4be7f1c78336 235 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 175 189 4.3E-9 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS03635 d9c5b9a4e6852044cf5f4be7f1c78336 235 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 189 205 4.3E-9 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS03635 d9c5b9a4e6852044cf5f4be7f1c78336 235 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 205 217 4.3E-9 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS03635 d9c5b9a4e6852044cf5f4be7f1c78336 235 SUPERFAMILY SSF75516 3 162 2.62E-35 T 22-04-2016 IPR005143 Transcription factor LuxR-like, autoinducer-binding domain PP4_RS03635 d9c5b9a4e6852044cf5f4be7f1c78336 235 PANTHER PTHR26402 175 235 5.2E-12 T 22-04-2016 PP4_RS08290 73f33f23d25d5ff8687893ffa5f7e30b 489 Pfam PF00361 Proton-conducting membrane transporter 126 422 4.7E-79 T 22-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 PP4_RS08290 73f33f23d25d5ff8687893ffa5f7e30b 489 TIGRFAM TIGR01770 NDH_I_N: proton-translocating NADH-quinone oxidoreductase, chain N 8 476 5.7E-128 T 22-04-2016 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 PP4_RS08290 73f33f23d25d5ff8687893ffa5f7e30b 489 PANTHER PTHR22773 1 483 1.4E-174 T 22-04-2016 PP4_RS08290 73f33f23d25d5ff8687893ffa5f7e30b 489 PANTHER PTHR22773:SF41 1 483 1.4E-174 T 22-04-2016 PP4_RS08290 73f33f23d25d5ff8687893ffa5f7e30b 489 Hamap MF_00445 NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic [ndhB]. 6 477 17.852 T 22-04-2016 IPR010096 NAD(P)H-quinone oxidoreductase, subunit N/subunit 2 GO:0008137|GO:0042773|GO:0055114 PP4_RS25550 b2f1642bc4fd3495f3675d2c9f3f4005 125 Pfam PF06155 Protein of unknown function (DUF971) 8 89 1.0E-24 T 22-04-2016 IPR010376 Domain of unknown function DUF971 Reactome: REACT_13|UniPathway: UPA00118 PP4_RS25550 b2f1642bc4fd3495f3675d2c9f3f4005 125 PANTHER PTHR35303 3 125 3.7E-65 T 22-04-2016 PP4_RS25550 b2f1642bc4fd3495f3675d2c9f3f4005 125 PANTHER PTHR35303:SF1 3 125 3.7E-65 T 22-04-2016 PP4_RS08935 d737003439a39a3ca9e3a2e23bf20715 111 PANTHER PTHR37010:SF1 1 111 2.6E-45 T 22-04-2016 PP4_RS08935 d737003439a39a3ca9e3a2e23bf20715 111 SUPERFAMILY SSF69721 1 111 3.14E-37 T 22-04-2016 IPR025526 DsrC-like domain PP4_RS08935 d737003439a39a3ca9e3a2e23bf20715 111 PANTHER PTHR37010 1 111 2.6E-45 T 22-04-2016 PP4_RS08935 d737003439a39a3ca9e3a2e23bf20715 111 TIGRFAM TIGR03342 dsrC_tusE_dsvC: sulfur relay protein, TusE/DsrC/DsvC family 5 111 1.7E-43 T 22-04-2016 IPR007453 Sulphur transfer protein DsrC/TusE PP4_RS08935 d737003439a39a3ca9e3a2e23bf20715 111 Gene3D G3DSA:3.30.1420.10 1 40 6.9E-13 T 22-04-2016 PP4_RS08935 d737003439a39a3ca9e3a2e23bf20715 111 Pfam PF04358 DsrC like protein 6 111 9.0E-38 T 22-04-2016 IPR007453 Sulphur transfer protein DsrC/TusE PP4_RS08935 d737003439a39a3ca9e3a2e23bf20715 111 Gene3D G3DSA:1.10.10.370 41 111 7.4E-30 T 22-04-2016 PP4_RS08935 d737003439a39a3ca9e3a2e23bf20715 111 PIRSF PIRSF006223 4 111 1.0E-33 T 22-04-2016 IPR007453 Sulphur transfer protein DsrC/TusE PP4_RS13340 62d47ba5dd96b1dbdb377b909e2104aa 517 Pfam PF08666 SAF domain 23 90 3.3E-12 T 22-04-2016 IPR013974 SAF domain PP4_RS13340 62d47ba5dd96b1dbdb377b909e2104aa 517 PANTHER PTHR30536:SF5 4 517 2.2E-200 T 22-04-2016 PP4_RS13340 62d47ba5dd96b1dbdb377b909e2104aa 517 PANTHER PTHR30536 4 517 2.2E-200 T 22-04-2016 PP4_RS13340 62d47ba5dd96b1dbdb377b909e2104aa 517 SMART SM00858 23 91 3.4E-14 T 22-04-2016 IPR013974 SAF domain PP4_RS13340 62d47ba5dd96b1dbdb377b909e2104aa 517 Pfam PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus 115 515 1.4E-159 T 22-04-2016 IPR007392 D-galactarate/Altronate dehydratase, C-terminal GO:0016829 PP4_RS16605 a8aa08182c320b2c7867cbe8df0d23d1 616 Pfam PF01841 Transglutaminase-like superfamily 257 329 4.1E-8 T 22-04-2016 IPR002931 Transglutaminase-like PP4_RS16605 a8aa08182c320b2c7867cbe8df0d23d1 616 SUPERFAMILY SSF54001 248 330 6.54E-10 T 22-04-2016 PP4_RS16605 a8aa08182c320b2c7867cbe8df0d23d1 616 Pfam PF12969 Domain of Unknown Function with PDB structure (DUF3857) 47 206 3.3E-36 T 22-04-2016 IPR024618 Domain of unknown function DUF3857 PP4_RS16820 fe1d7513130ee6b0d98cdfca5a7064df 236 SUPERFAMILY SSF75625 2 234 3.79E-66 T 22-04-2016 IPR029072 YebC-like PP4_RS16820 fe1d7513130ee6b0d98cdfca5a7064df 236 PANTHER PTHR12532 16 231 1.4E-67 T 22-04-2016 IPR002876 Transcriptional regulator TACO1-like PP4_RS16820 fe1d7513130ee6b0d98cdfca5a7064df 236 Gene3D G3DSA:3.30.70.980 129 199 3.6E-18 T 22-04-2016 IPR026564 Transcriptional regulator TACO1-like, domain 3 PP4_RS16820 fe1d7513130ee6b0d98cdfca5a7064df 236 Gene3D G3DSA:1.10.10.200 19 73 1.5E-19 T 22-04-2016 IPR017856 Integrase, N-terminal zinc-binding domain-like PP4_RS16820 fe1d7513130ee6b0d98cdfca5a7064df 236 Pfam PF01709 Transcriptional regulator 8 231 5.0E-67 T 22-04-2016 IPR002876 Transcriptional regulator TACO1-like PP4_RS16820 fe1d7513130ee6b0d98cdfca5a7064df 236 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 1 236 24.595 T 22-04-2016 IPR002876 Transcriptional regulator TACO1-like PP4_RS16820 fe1d7513130ee6b0d98cdfca5a7064df 236 Gene3D G3DSA:3.30.1270.10 78 128 3.8E-26 T 22-04-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 PP4_RS16820 fe1d7513130ee6b0d98cdfca5a7064df 236 Gene3D G3DSA:3.30.1270.10 209 232 3.8E-26 T 22-04-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 PP4_RS25070 bfef8293afa0e9189e5adb0d6d1d5845 269 Pfam PF00581 Rhodanese-like domain 149 261 3.2E-17 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS25070 bfef8293afa0e9189e5adb0d6d1d5845 269 Pfam PF00581 Rhodanese-like domain 14 121 5.5E-13 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS25070 bfef8293afa0e9189e5adb0d6d1d5845 269 SUPERFAMILY SSF52821 144 268 2.88E-30 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS25070 bfef8293afa0e9189e5adb0d6d1d5845 269 ProSitePatterns PS00683 Rhodanese C-terminal signature. 249 259 - T 22-04-2016 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 PP4_RS25070 bfef8293afa0e9189e5adb0d6d1d5845 269 Gene3D G3DSA:3.40.250.10 146 268 2.2E-33 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS25070 bfef8293afa0e9189e5adb0d6d1d5845 269 PANTHER PTHR11364:SF0 11 269 3.4E-62 T 22-04-2016 PP4_RS25070 bfef8293afa0e9189e5adb0d6d1d5845 269 SMART SM00450 11 126 9.2E-13 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS25070 bfef8293afa0e9189e5adb0d6d1d5845 269 SMART SM00450 147 265 1.9E-23 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS25070 bfef8293afa0e9189e5adb0d6d1d5845 269 Gene3D G3DSA:3.40.250.10 9 129 3.4E-28 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS25070 bfef8293afa0e9189e5adb0d6d1d5845 269 SUPERFAMILY SSF52821 7 125 1.96E-28 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS25070 bfef8293afa0e9189e5adb0d6d1d5845 269 PANTHER PTHR11364 11 269 3.4E-62 T 22-04-2016 PP4_RS25070 bfef8293afa0e9189e5adb0d6d1d5845 269 ProSitePatterns PS00380 Rhodanese signature 1. 36 47 - T 22-04-2016 IPR001307 Thiosulphate sulfurtransferase, conserved site GO:0004792 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 PP4_RS02570 cd41d6ccf12fe881ebc8581496886fe8 101 Hamap MF_00537 30S ribosomal protein S14 [rpsN]. 1 101 25.777 T 22-04-2016 IPR023036 Ribosomal protein S14, bacterial/plastid PP4_RS02570 cd41d6ccf12fe881ebc8581496886fe8 101 Pfam PF00253 Ribosomal protein S14p/S29e 48 100 7.7E-24 T 22-04-2016 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02570 cd41d6ccf12fe881ebc8581496886fe8 101 Gene3D G3DSA:4.10.830.10 41 101 2.2E-27 T 22-04-2016 PP4_RS02570 cd41d6ccf12fe881ebc8581496886fe8 101 PANTHER PTHR19836 1 101 8.1E-54 T 22-04-2016 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02570 cd41d6ccf12fe881ebc8581496886fe8 101 SUPERFAMILY SSF57716 2 101 5.27E-36 T 22-04-2016 PP4_RS21155 98d5768548af6c9d4a80461d79a95484 258 Hamap MF_01523 Ribosomal RNA small subunit methyltransferase J [rsmJ]. 8 254 39.581 T 22-04-2016 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 PP4_RS21155 98d5768548af6c9d4a80461d79a95484 258 SUPERFAMILY SSF53335 13 254 9.47E-74 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS21155 98d5768548af6c9d4a80461d79a95484 258 Gene3D G3DSA:3.40.50.150 63 254 2.9E-76 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS21155 98d5768548af6c9d4a80461d79a95484 258 PANTHER PTHR36112 10 258 2.0E-118 T 22-04-2016 PP4_RS21155 98d5768548af6c9d4a80461d79a95484 258 PANTHER PTHR36112:SF1 10 258 2.0E-118 T 22-04-2016 PP4_RS21155 98d5768548af6c9d4a80461d79a95484 258 Pfam PF04445 Putative SAM-dependent methyltransferase 25 252 2.3E-93 T 22-04-2016 IPR007536 Ribosomal RNA small subunit methyltransferase J GO:0008990|GO:0031167 PP4_RS21860 c4de35c51d47d5953dd526d567b6cd5b 348 TIGRFAM TIGR01141 hisC: histidinol-phosphate transaminase 8 347 2.4E-92 T 22-04-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9|UniPathway: UPA00031 PP4_RS21860 c4de35c51d47d5953dd526d567b6cd5b 348 SUPERFAMILY SSF53383 5 347 1.09E-78 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS21860 c4de35c51d47d5953dd526d567b6cd5b 348 PANTHER PTHR11751:SF398 3 348 3.1E-117 T 22-04-2016 PP4_RS21860 c4de35c51d47d5953dd526d567b6cd5b 348 Gene3D G3DSA:3.90.1150.10 253 347 2.3E-25 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS21860 c4de35c51d47d5953dd526d567b6cd5b 348 Gene3D G3DSA:3.40.640.10 38 252 1.4E-62 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS21860 c4de35c51d47d5953dd526d567b6cd5b 348 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 207 216 - T 22-04-2016 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0008152|GO:0016740 PP4_RS21860 c4de35c51d47d5953dd526d567b6cd5b 348 PANTHER PTHR11751 3 348 3.1E-117 T 22-04-2016 PP4_RS21860 c4de35c51d47d5953dd526d567b6cd5b 348 Hamap MF_01023 Histidinol-phosphate aminotransferase [hisC]. 4 348 55.254 T 22-04-2016 IPR005861 Histidinol-phosphate aminotransferase family GO:0000105|GO:0004400 KEGG: 00340+2.6.1.9|KEGG: 00350+2.6.1.9|KEGG: 00360+2.6.1.9|KEGG: 00400+2.6.1.9|KEGG: 00401+2.6.1.9|KEGG: 00960+2.6.1.9|UniPathway: UPA00031 PP4_RS21860 c4de35c51d47d5953dd526d567b6cd5b 348 Pfam PF00155 Aminotransferase class I and II 26 347 1.5E-57 T 22-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PP4_RS19690 a4c15c3a21d74aa43811fc083919b2ca 160 SUPERFAMILY SSF55781 19 153 1.0E-39 T 22-04-2016 IPR029016 GAF domain-like PP4_RS19690 a4c15c3a21d74aa43811fc083919b2ca 160 ProSitePatterns PS01320 Uncharacterized protein family UPF0067 signature. 97 114 - T 22-04-2016 IPR000614 Free Met sulfoxide reductase conserved site PP4_RS19690 a4c15c3a21d74aa43811fc083919b2ca 160 PANTHER PTHR21021 14 154 2.4E-53 T 22-04-2016 PP4_RS19690 a4c15c3a21d74aa43811fc083919b2ca 160 Gene3D G3DSA:3.30.450.40 15 152 2.8E-47 T 22-04-2016 IPR029016 GAF domain-like PP4_RS19690 a4c15c3a21d74aa43811fc083919b2ca 160 Pfam PF13185 GAF domain 49 152 8.7E-12 T 22-04-2016 IPR003018 GAF domain GO:0005515 PP4_RS12375 9fc40f48dce835747862c9a99ae95d54 831 Pfam PF06761 Intracellular multiplication and human macrophage-killing 498 696 2.2E-16 T 22-04-2016 IPR009612 ImcF-related PP4_RS12375 9fc40f48dce835747862c9a99ae95d54 831 SUPERFAMILY SSF103088 707 827 2.88E-24 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS12375 9fc40f48dce835747862c9a99ae95d54 831 Gene3D G3DSA:3.40.50.300 128 290 2.9E-6 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS12375 9fc40f48dce835747862c9a99ae95d54 831 SUPERFAMILY SSF52540 124 269 3.68E-9 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS12375 9fc40f48dce835747862c9a99ae95d54 831 Gene3D G3DSA:3.30.1330.60 706 827 1.9E-29 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS12375 9fc40f48dce835747862c9a99ae95d54 831 PRINTS PR01021 OMPA domain signature 719 741 2.7E-6 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PP4_RS12375 9fc40f48dce835747862c9a99ae95d54 831 PRINTS PR01021 OMPA domain signature 765 781 2.7E-6 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PP4_RS12375 9fc40f48dce835747862c9a99ae95d54 831 PRINTS PR01021 OMPA domain signature 750 765 2.7E-6 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PP4_RS12375 9fc40f48dce835747862c9a99ae95d54 831 PANTHER PTHR36153 592 633 1.7E-90 T 22-04-2016 PP4_RS12375 9fc40f48dce835747862c9a99ae95d54 831 PANTHER PTHR36153 15 561 1.7E-90 T 22-04-2016 PP4_RS12375 9fc40f48dce835747862c9a99ae95d54 831 Pfam PF00691 OmpA family 716 810 5.3E-14 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS12375 9fc40f48dce835747862c9a99ae95d54 831 Pfam PF14331 ImcF-related N-terminal domain 189 446 1.0E-73 T 22-04-2016 IPR025743 ImcF-related, N-terminal domain PP4_RS12375 9fc40f48dce835747862c9a99ae95d54 831 PANTHER PTHR36153:SF1 592 633 1.7E-90 T 22-04-2016 PP4_RS12375 9fc40f48dce835747862c9a99ae95d54 831 PANTHER PTHR36153:SF1 15 561 1.7E-90 T 22-04-2016 PP4_RS12375 9fc40f48dce835747862c9a99ae95d54 831 TIGRFAM TIGR03348 VI_IcmF: type VI secretion protein IcmF 18 559 1.8E-127 T 22-04-2016 IPR017731 Type VI secretion system, IcmF PP4_RS12965 b328f416f9270fa40e888287936276a7 215 Pfam PF03070 TENA/THI-4/PQQC family 12 209 6.8E-13 T 22-04-2016 IPR004305 Thiaminase-2/PQQC PP4_RS12965 b328f416f9270fa40e888287936276a7 215 PANTHER PTHR20858:SF18 1 181 1.1E-37 T 22-04-2016 PP4_RS12965 b328f416f9270fa40e888287936276a7 215 PIRSF PIRSF003170 1 215 4.1E-65 T 22-04-2016 IPR026285 TenA_E protein PP4_RS12965 b328f416f9270fa40e888287936276a7 215 Gene3D G3DSA:1.20.910.10 3 211 2.4E-48 T 22-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 PP4_RS12965 b328f416f9270fa40e888287936276a7 215 SUPERFAMILY SSF48613 3 211 1.15E-50 T 22-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 PP4_RS12965 b328f416f9270fa40e888287936276a7 215 PANTHER PTHR20858 1 181 1.1E-37 T 22-04-2016 PP4_RS19325 3e9db0b491a42e02d7d6f1e3829cd041 370 TIGRFAM TIGR01745 asd_gamma: aspartate-semialdehyde dehydrogenase 2 368 2.6E-198 T 22-04-2016 IPR011534 Aspartate-semialdehyde dehydrogenase, gamma-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 PP4_RS19325 3e9db0b491a42e02d7d6f1e3829cd041 370 SMART SM00859 3 122 5.9E-26 T 22-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 PP4_RS19325 3e9db0b491a42e02d7d6f1e3829cd041 370 Gene3D G3DSA:3.40.50.720 1 142 7.7E-64 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS19325 3e9db0b491a42e02d7d6f1e3829cd041 370 Gene3D G3DSA:3.30.360.10 143 351 2.0E-74 T 22-04-2016 PP4_RS19325 3e9db0b491a42e02d7d6f1e3829cd041 370 PIRSF PIRSF000148 1 370 2.9E-64 T 22-04-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 PP4_RS19325 3e9db0b491a42e02d7d6f1e3829cd041 370 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 3 121 9.6E-25 T 22-04-2016 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 PP4_RS19325 3e9db0b491a42e02d7d6f1e3829cd041 370 ProSitePatterns PS01103 Aspartate-semialdehyde dehydrogenase signature. 262 276 - T 22-04-2016 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site GO:0004073|GO:0006520|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 PP4_RS19325 3e9db0b491a42e02d7d6f1e3829cd041 370 PANTHER PTHR10174 201 370 8.1E-158 T 22-04-2016 PP4_RS19325 3e9db0b491a42e02d7d6f1e3829cd041 370 PANTHER PTHR10174 103 179 8.1E-158 T 22-04-2016 PP4_RS19325 3e9db0b491a42e02d7d6f1e3829cd041 370 Hamap MF_02121 Aspartate-semialdehyde dehydrogenase [asd]. 1 368 34.273 T 22-04-2016 IPR012080 Aspartate-semialdehyde dehydrogenase GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|UniPathway: UPA00034|UniPathway: UPA00050|UniPathway: UPA00051 PP4_RS19325 3e9db0b491a42e02d7d6f1e3829cd041 370 SUPERFAMILY SSF51735 1 147 2.41E-53 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS19325 3e9db0b491a42e02d7d6f1e3829cd041 370 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 144 354 1.6E-61 T 22-04-2016 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0003942|GO:0005737|GO:0008652|GO:0016620|GO:0046983|GO:0055114 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PP4_RS19325 3e9db0b491a42e02d7d6f1e3829cd041 370 PANTHER PTHR10174:SF116 201 370 8.1E-158 T 22-04-2016 PP4_RS19325 3e9db0b491a42e02d7d6f1e3829cd041 370 PANTHER PTHR10174:SF116 103 179 8.1E-158 T 22-04-2016 PP4_RS19325 3e9db0b491a42e02d7d6f1e3829cd041 370 SUPERFAMILY SSF55347 134 355 1.15E-76 T 22-04-2016 PP4_RS15710 09c6644f2a947c6fd87dabe64dac9b11 394 PANTHER PTHR11014:SF63 15 394 9.1E-125 T 22-04-2016 PP4_RS15710 09c6644f2a947c6fd87dabe64dac9b11 394 PANTHER PTHR11014 15 394 9.1E-125 T 22-04-2016 PP4_RS15710 09c6644f2a947c6fd87dabe64dac9b11 394 PIRSF PIRSF005962 6 394 2.5E-118 T 22-04-2016 IPR017439 Amidohydrolase GO:0016787 PP4_RS15710 09c6644f2a947c6fd87dabe64dac9b11 394 Gene3D G3DSA:3.30.70.360 186 302 2.4E-33 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain PP4_RS15710 09c6644f2a947c6fd87dabe64dac9b11 394 SUPERFAMILY SSF55031 189 299 3.79E-28 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain PP4_RS15710 09c6644f2a947c6fd87dabe64dac9b11 394 Pfam PF07687 Peptidase dimerisation domain 191 286 1.8E-11 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain PP4_RS15710 09c6644f2a947c6fd87dabe64dac9b11 394 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 21 381 1.8E-95 T 22-04-2016 IPR017439 Amidohydrolase GO:0016787 PP4_RS15710 09c6644f2a947c6fd87dabe64dac9b11 394 Pfam PF01546 Peptidase family M20/M25/M40 78 389 8.3E-35 T 22-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 PP4_RS15710 09c6644f2a947c6fd87dabe64dac9b11 394 Gene3D G3DSA:3.40.630.10 16 183 2.7E-86 T 22-04-2016 PP4_RS15710 09c6644f2a947c6fd87dabe64dac9b11 394 Gene3D G3DSA:3.40.630.10 303 393 2.7E-86 T 22-04-2016 PP4_RS15710 09c6644f2a947c6fd87dabe64dac9b11 394 SUPERFAMILY SSF53187 303 393 9.14E-80 T 22-04-2016 PP4_RS15710 09c6644f2a947c6fd87dabe64dac9b11 394 SUPERFAMILY SSF53187 16 202 9.14E-80 T 22-04-2016 PP4_RS10085 bbd8fea687d8866c1266230190c6146f 373 Gene3D G3DSA:3.90.870.10 1 210 5.7E-96 T 22-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain PP4_RS10085 bbd8fea687d8866c1266230190c6146f 373 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 3 199 1.4E-70 T 22-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PP4_RS10085 bbd8fea687d8866c1266230190c6146f 373 PANTHER PTHR21327:SF6 1 369 1.2E-134 T 22-04-2016 PP4_RS10085 bbd8fea687d8866c1266230190c6146f 373 Pfam PF00925 GTP cyclohydrolase II 208 366 2.4E-28 T 22-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 PP4_RS10085 bbd8fea687d8866c1266230190c6146f 373 PANTHER PTHR21327 1 369 1.2E-134 T 22-04-2016 PP4_RS10085 bbd8fea687d8866c1266230190c6146f 373 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 7 198 1.5E-79 T 22-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PP4_RS10085 bbd8fea687d8866c1266230190c6146f 373 PIRSF PIRSF001259 1 370 5.0E-113 T 22-04-2016 PP4_RS10085 bbd8fea687d8866c1266230190c6146f 373 SUPERFAMILY SSF142695 205 368 2.75E-39 T 22-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 PP4_RS10085 bbd8fea687d8866c1266230190c6146f 373 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 1 203 37.408 T 22-04-2016 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PP4_RS10085 bbd8fea687d8866c1266230190c6146f 373 SUPERFAMILY SSF55821 2 202 5.49E-83 T 22-04-2016 IPR017945 DHBP synthase RibB-like alpha/beta domain PP4_RS17480 eb4e74b0eee7a388abda1ff6e809bdd9 494 SUPERFAMILY SSF103378 13 493 5.75E-148 T 22-04-2016 IPR005656 MmgE/PrpD GO:0016829 PP4_RS17480 eb4e74b0eee7a388abda1ff6e809bdd9 494 Pfam PF03972 MmgE/PrpD family 18 478 2.1E-152 T 22-04-2016 IPR005656 MmgE/PrpD GO:0016829 PP4_RS17480 eb4e74b0eee7a388abda1ff6e809bdd9 494 PANTHER PTHR16943 1 494 9.1E-249 T 22-04-2016 IPR005656 MmgE/PrpD GO:0016829 PP4_RS17480 eb4e74b0eee7a388abda1ff6e809bdd9 494 Gene3D G3DSA:3.30.1330.120 300 437 5.6E-51 T 22-04-2016 PP4_RS17480 eb4e74b0eee7a388abda1ff6e809bdd9 494 PANTHER PTHR16943:SF19 1 494 9.1E-249 T 22-04-2016 PP4_RS17480 eb4e74b0eee7a388abda1ff6e809bdd9 494 TIGRFAM TIGR02330 prpD: 2-methylcitrate dehydratase 14 494 4.8E-261 T 22-04-2016 IPR012705 2-methylcitrate dehydratase PrpD GO:0019629|GO:0047547|GO:0051537 KEGG: 00640+4.2.1.79|UniPathway: UPA00946 PP4_RS11990 6ddea3e3c2ce5b42481eb6b3c0db0d2a 204 TIGRFAM TIGR03135 malonate_mdcG: malonate decarboxylase holo-[acyl-carrier-protein] synthase 5 195 1.0E-53 T 22-04-2016 IPR017557 Phosphoribosyl-dephospho-CoA transferase GO:0016779 MetaCyc: PWY-5796 PP4_RS11990 6ddea3e3c2ce5b42481eb6b3c0db0d2a 204 Hamap MF_00650 Phosphoribosyl-dephospho-CoA transferase [mdcG]. 3 201 35.92 T 22-04-2016 IPR017557 Phosphoribosyl-dephospho-CoA transferase GO:0016779 MetaCyc: PWY-5796 PP4_RS11990 6ddea3e3c2ce5b42481eb6b3c0db0d2a 204 Pfam PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG 5 196 8.7E-56 T 22-04-2016 IPR017557 Phosphoribosyl-dephospho-CoA transferase GO:0016779 MetaCyc: PWY-5796 PP4_RS19350 8252b5bf08fb93598fcd055b6328ab59 292 Gene3D G3DSA:3.40.190.10 182 250 2.6E-21 T 22-04-2016 PP4_RS19350 8252b5bf08fb93598fcd055b6328ab59 292 PANTHER PTHR30126:SF33 1 286 2.3E-159 T 22-04-2016 PP4_RS19350 8252b5bf08fb93598fcd055b6328ab59 292 SUPERFAMILY SSF46785 1 110 4.09E-27 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS19350 8252b5bf08fb93598fcd055b6328ab59 292 SUPERFAMILY SSF53850 86 290 6.61E-43 T 22-04-2016 PP4_RS19350 8252b5bf08fb93598fcd055b6328ab59 292 Gene3D G3DSA:3.40.190.10 89 181 1.5E-18 T 22-04-2016 PP4_RS19350 8252b5bf08fb93598fcd055b6328ab59 292 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 3.6E-23 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS19350 8252b5bf08fb93598fcd055b6328ab59 292 Gene3D G3DSA:1.10.10.10 1 85 3.1E-30 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS19350 8252b5bf08fb93598fcd055b6328ab59 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.2E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS19350 8252b5bf08fb93598fcd055b6328ab59 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.2E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS19350 8252b5bf08fb93598fcd055b6328ab59 292 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.2E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS19350 8252b5bf08fb93598fcd055b6328ab59 292 PANTHER PTHR30126 1 286 2.3E-159 T 22-04-2016 PP4_RS19350 8252b5bf08fb93598fcd055b6328ab59 292 Pfam PF03466 LysR substrate binding domain 88 288 7.4E-46 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS18040 4e6d8eecf723a32c7c3667476cf4251e 126 SUPERFAMILY SSF54909 4 74 9.96E-10 T 22-04-2016 IPR011008 Dimeric alpha-beta barrel PP4_RS18040 4e6d8eecf723a32c7c3667476cf4251e 126 Pfam PF03992 Antibiotic biosynthesis monooxygenase 10 73 6.8E-6 T 22-04-2016 IPR007138 Antibiotic biosynthesis monooxygenase domain PP4_RS18040 4e6d8eecf723a32c7c3667476cf4251e 126 Gene3D G3DSA:3.30.70.900 3 98 3.9E-21 T 22-04-2016 PP4_RS14845 e92b4308a41ec260685ff70e2a9ec0f2 106 PANTHER PTHR34068 1 105 5.8E-33 T 22-04-2016 PP4_RS14845 e92b4308a41ec260685ff70e2a9ec0f2 106 Hamap MF_00338 UPF0145 protein YbjQ [ybjQ]. 1 105 21.689 T 22-04-2016 IPR002765 Uncharacterised protein family UPF0145 PP4_RS14845 e92b4308a41ec260685ff70e2a9ec0f2 106 Pfam PF01906 Putative heavy-metal-binding 1 104 3.6E-34 T 22-04-2016 IPR002765 Uncharacterised protein family UPF0145 PP4_RS14845 e92b4308a41ec260685ff70e2a9ec0f2 106 Gene3D G3DSA:3.30.110.70 1 105 1.2E-33 T 22-04-2016 IPR002765 Uncharacterised protein family UPF0145 PP4_RS14845 e92b4308a41ec260685ff70e2a9ec0f2 106 PANTHER PTHR34068:SF1 1 105 5.8E-33 T 22-04-2016 PP4_RS14845 e92b4308a41ec260685ff70e2a9ec0f2 106 SUPERFAMILY SSF117782 1 106 2.49E-34 T 22-04-2016 IPR002765 Uncharacterised protein family UPF0145 PP4_RS22660 90a19a065e0811c51a0a0b4d11945aa8 390 Gene3D G3DSA:3.40.50.2300 74 118 6.8E-4 T 22-04-2016 PP4_RS22660 90a19a065e0811c51a0a0b4d11945aa8 390 Pfam PF13692 Glycosyl transferases group 1 209 343 4.7E-24 T 22-04-2016 PP4_RS22660 90a19a065e0811c51a0a0b4d11945aa8 390 Gene3D G3DSA:3.40.50.2000 181 357 9.0E-25 T 22-04-2016 PP4_RS22660 90a19a065e0811c51a0a0b4d11945aa8 390 Pfam PF13439 Glycosyltransferase Family 4 19 183 6.3E-25 T 22-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain PP4_RS22660 90a19a065e0811c51a0a0b4d11945aa8 390 SUPERFAMILY SSF53756 8 377 9.07E-75 T 22-04-2016 PP4_RS22660 90a19a065e0811c51a0a0b4d11945aa8 390 PANTHER PTHR12526:SF363 6 384 2.4E-110 T 22-04-2016 PP4_RS22660 90a19a065e0811c51a0a0b4d11945aa8 390 PANTHER PTHR12526 6 384 2.4E-110 T 22-04-2016 PP4_RS12780 fc6d72eb8ca10316375a1c27ebd5ea56 289 PANTHER PTHR30126 1 284 1.2E-113 T 22-04-2016 PP4_RS12780 fc6d72eb8ca10316375a1c27ebd5ea56 289 Pfam PF03466 LysR substrate binding domain 85 284 5.3E-40 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS12780 fc6d72eb8ca10316375a1c27ebd5ea56 289 PANTHER PTHR30126:SF31 1 284 1.2E-113 T 22-04-2016 PP4_RS12780 fc6d72eb8ca10316375a1c27ebd5ea56 289 SUPERFAMILY SSF46785 2 108 3.08E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS12780 fc6d72eb8ca10316375a1c27ebd5ea56 289 SUPERFAMILY SSF53850 86 284 2.41E-35 T 22-04-2016 PP4_RS12780 fc6d72eb8ca10316375a1c27ebd5ea56 289 Gene3D G3DSA:3.40.190.10 86 220 2.3E-26 T 22-04-2016 PP4_RS12780 fc6d72eb8ca10316375a1c27ebd5ea56 289 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 61 8.2E-18 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS12780 fc6d72eb8ca10316375a1c27ebd5ea56 289 Gene3D G3DSA:1.10.10.10 2 79 1.2E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS22270 7b8a7728dd80cbae3b12a5062453fd96 341 Pfam PF13413 Helix-turn-helix domain 20 79 4.0E-18 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS22270 7b8a7728dd80cbae3b12a5062453fd96 341 SMART SM00530 19 80 8.1E-5 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS22270 7b8a7728dd80cbae3b12a5062453fd96 341 SUPERFAMILY SSF47413 16 57 6.76E-8 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS22270 7b8a7728dd80cbae3b12a5062453fd96 341 Pfam PF13464 Domain of unknown function (DUF4115) 266 339 1.3E-24 T 22-04-2016 IPR025194 Domain of unknown function DUF4115 PP4_RS22270 7b8a7728dd80cbae3b12a5062453fd96 341 PANTHER PTHR34475 3 341 3.4E-46 T 22-04-2016 PP4_RS22270 7b8a7728dd80cbae3b12a5062453fd96 341 PANTHER PTHR34475:SF1 3 341 3.4E-46 T 22-04-2016 PP4_RS22270 7b8a7728dd80cbae3b12a5062453fd96 341 Gene3D G3DSA:1.10.260.40 17 83 2.4E-9 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS15910 4031e4e99b8c07b8f480590738dc6924 291 SUPERFAMILY SSF53850 26 280 4.25E-27 T 22-04-2016 PP4_RS15910 4031e4e99b8c07b8f480590738dc6924 291 Gene3D G3DSA:3.40.190.10 155 232 4.0E-6 T 22-04-2016 PP4_RS15910 4031e4e99b8c07b8f480590738dc6924 291 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 34 281 1.5E-23 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS15910 4031e4e99b8c07b8f480590738dc6924 291 Gene3D G3DSA:3.40.190.10 16 75 1.8E-10 T 22-04-2016 PP4_RS15910 4031e4e99b8c07b8f480590738dc6924 291 SMART SM00062 33 284 2.1E-8 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS26255 26fbd7045a3c05b19aea12d33560c85d 159 Hamap MF_00298 RNA pyrophosphohydrolase [rppH]. 1 156 37.497 T 22-04-2016 IPR022927 RNA pyrophosphohydrolase RppH PP4_RS26255 26fbd7045a3c05b19aea12d33560c85d 159 Pfam PF00293 NUDIX domain 7 146 1.5E-26 T 22-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 PP4_RS26255 26fbd7045a3c05b19aea12d33560c85d 159 PRINTS PR00502 NUDIX hydrolase family signature 47 62 1.7E-6 T 22-04-2016 IPR020476 NUDIX hydrolase PP4_RS26255 26fbd7045a3c05b19aea12d33560c85d 159 PRINTS PR00502 NUDIX hydrolase family signature 33 47 1.7E-6 T 22-04-2016 IPR020476 NUDIX hydrolase PP4_RS26255 26fbd7045a3c05b19aea12d33560c85d 159 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 22-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 PP4_RS26255 26fbd7045a3c05b19aea12d33560c85d 159 SUPERFAMILY SSF55811 4 156 7.85E-33 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PP4_RS26255 26fbd7045a3c05b19aea12d33560c85d 159 PANTHER PTHR23114 1 152 4.3E-54 T 22-04-2016 PP4_RS26255 26fbd7045a3c05b19aea12d33560c85d 159 Gene3D G3DSA:3.90.79.10 3 151 3.5E-31 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PP4_RS13780 eddd06013b6477af5f4f67fcd10fc494 249 SMART SM00893 23 211 2.0E-68 T 22-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 PP4_RS13780 eddd06013b6477af5f4f67fcd10fc494 249 Gene3D G3DSA:3.40.50.620 1 247 2.6E-103 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS13780 eddd06013b6477af5f4f67fcd10fc494 249 PANTHER PTHR21294 1 249 5.7E-152 T 22-04-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 PP4_RS13780 eddd06013b6477af5f4f67fcd10fc494 249 SUPERFAMILY SSF52402 1 242 6.91E-86 T 22-04-2016 PP4_RS13780 eddd06013b6477af5f4f67fcd10fc494 249 PIRSF PIRSF000090 1 249 5.7E-84 T 22-04-2016 IPR012255 Electron transfer flavoprotein, beta subunit GO:0009055 PP4_RS13780 eddd06013b6477af5f4f67fcd10fc494 249 ProSitePatterns PS01065 Electron transfer flavoprotein beta-subunit signature. 155 175 - T 22-04-2016 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site GO:0009055 PP4_RS13780 eddd06013b6477af5f4f67fcd10fc494 249 PANTHER PTHR21294:SF8 1 249 5.7E-152 T 22-04-2016 PP4_RS13780 eddd06013b6477af5f4f67fcd10fc494 249 Pfam PF01012 Electron transfer flavoprotein domain 29 206 1.3E-46 T 22-04-2016 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Reactome: REACT_6305 PP4_RS07555 1998145477b3ac3e40f3ba9bebdd8c74 167 Pfam PF04115 Ureidoglycolate lyase 2 158 6.5E-52 T 22-04-2016 IPR007247 Ureidoglycolate lyase GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705|UniPathway: UPA00395 PP4_RS07555 1998145477b3ac3e40f3ba9bebdd8c74 167 Hamap MF_00616 Ureidoglycolate lyase [allA]. 2 163 40.696 T 22-04-2016 IPR023525 Ureidoglycolate lyase, bacterial GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705|UniPathway: UPA00395 PP4_RS07555 1998145477b3ac3e40f3ba9bebdd8c74 167 PIRSF PIRSF017306 2 162 7.4E-50 T 22-04-2016 IPR007247 Ureidoglycolate lyase GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705|UniPathway: UPA00395 PP4_RS07555 1998145477b3ac3e40f3ba9bebdd8c74 167 SUPERFAMILY SSF51182 1 162 2.22E-57 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS07555 1998145477b3ac3e40f3ba9bebdd8c74 167 PANTHER PTHR21221:SF2 1 165 2.5E-91 T 22-04-2016 PP4_RS07555 1998145477b3ac3e40f3ba9bebdd8c74 167 PANTHER PTHR21221 1 165 2.5E-91 T 22-04-2016 IPR007247 Ureidoglycolate lyase GO:0000256|GO:0050385 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705|UniPathway: UPA00395 PP4_RS07555 1998145477b3ac3e40f3ba9bebdd8c74 167 Gene3D G3DSA:2.60.120.480 2 164 4.8E-60 T 22-04-2016 IPR024060 Ureidoglycolate lyase domain GO:0004848 KEGG: 00230+4.3.2.3|MetaCyc: PWY-5694|MetaCyc: PWY-5705|UniPathway: UPA00395 PP4_RS06440 06ff9018e204234d9d6fdfe7b537916b 122 Gene3D G3DSA:3.40.630.30 7 85 7.7E-12 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS06440 06ff9018e204234d9d6fdfe7b537916b 122 SUPERFAMILY SSF55729 5 84 1.03E-13 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS06440 06ff9018e204234d9d6fdfe7b537916b 122 Pfam PF13673 Acetyltransferase (GNAT) domain 4 83 6.2E-10 T 22-04-2016 IPR000182 GNAT domain GO:0008080 PP4_RS08695 7829feb5711026302ed950f33782fa3f 689 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 111 668 2.8E-103 T 22-04-2016 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 PP4_RS08695 7829feb5711026302ed950f33782fa3f 689 Pfam PF02446 4-alpha-glucanotransferase 157 658 5.1E-109 T 22-04-2016 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 PP4_RS08695 7829feb5711026302ed950f33782fa3f 689 PANTHER PTHR32438 94 682 5.7E-132 T 22-04-2016 PP4_RS08695 7829feb5711026302ed950f33782fa3f 689 Gene3D G3DSA:3.20.20.80 150 674 1.2E-155 T 22-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PP4_RS08695 7829feb5711026302ed950f33782fa3f 689 PANTHER PTHR32438:SF5 94 682 5.7E-132 T 22-04-2016 PP4_RS08695 7829feb5711026302ed950f33782fa3f 689 SUPERFAMILY SSF51445 593 679 1.1E-138 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily PP4_RS08695 7829feb5711026302ed950f33782fa3f 689 SUPERFAMILY SSF51445 132 565 1.1E-138 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily PP4_RS26615 d1e26cde6f433297f5955f5349a40278 325 SUPERFAMILY SSF50129 1 140 4.26E-38 T 22-04-2016 IPR011032 GroES-like PP4_RS26615 d1e26cde6f433297f5955f5349a40278 325 PANTHER PTHR11695 15 324 1.2E-131 T 22-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PP4_RS26615 d1e26cde6f433297f5955f5349a40278 325 PANTHER PTHR11695:SF31 15 324 1.2E-131 T 22-04-2016 PP4_RS26615 d1e26cde6f433297f5955f5349a40278 325 Gene3D G3DSA:3.40.50.720 146 261 5.7E-35 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS26615 d1e26cde6f433297f5955f5349a40278 325 Pfam PF00107 Zinc-binding dehydrogenase 151 271 3.2E-32 T 22-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 PP4_RS26615 d1e26cde6f433297f5955f5349a40278 325 SUPERFAMILY SSF51735 112 272 1.29E-49 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS26615 d1e26cde6f433297f5955f5349a40278 325 SMART SM00829 10 322 1.0E-46 T 22-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 PP4_RS26615 d1e26cde6f433297f5955f5349a40278 325 Gene3D G3DSA:3.90.180.10 1 145 1.8E-44 T 22-04-2016 IPR011032 GroES-like PP4_RS26615 d1e26cde6f433297f5955f5349a40278 325 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 87 6.1E-10 T 22-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 PP4_RS00825 e84f611f4fb24b78ce01d3e6aad2163e 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 43 57 5.9E-6 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS00825 e84f611f4fb24b78ce01d3e6aad2163e 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 57 73 5.9E-6 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS00825 e84f611f4fb24b78ce01d3e6aad2163e 229 Gene3D G3DSA:1.10.10.10 13 85 1.2E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS00825 e84f611f4fb24b78ce01d3e6aad2163e 229 SUPERFAMILY SSF46785 17 86 8.33E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS00825 e84f611f4fb24b78ce01d3e6aad2163e 229 PANTHER PTHR11751:SF436 25 109 6.6E-24 T 22-04-2016 PP4_RS00825 e84f611f4fb24b78ce01d3e6aad2163e 229 PANTHER PTHR11751 25 109 6.6E-24 T 22-04-2016 PP4_RS00825 e84f611f4fb24b78ce01d3e6aad2163e 229 SMART SM00895 93 214 2.0E-10 T 22-04-2016 IPR011711 GntR, C-terminal PP4_RS00825 e84f611f4fb24b78ce01d3e6aad2163e 229 SMART SM00345 25 83 3.3E-17 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS00825 e84f611f4fb24b78ce01d3e6aad2163e 229 SUPERFAMILY SSF48008 89 221 6.02E-19 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PP4_RS00825 e84f611f4fb24b78ce01d3e6aad2163e 229 Pfam PF07729 FCD domain 93 213 1.4E-17 T 22-04-2016 IPR011711 GntR, C-terminal PP4_RS00825 e84f611f4fb24b78ce01d3e6aad2163e 229 Pfam PF00392 Bacterial regulatory proteins, gntR family 24 83 7.7E-18 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS00825 e84f611f4fb24b78ce01d3e6aad2163e 229 Gene3D G3DSA:1.20.120.530 89 224 1.3E-34 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PP4_RS23760 7366f0d7a99b078cd1bc66adef11affc 185 ProSitePatterns PS01071 grpE protein signature. 127 170 - T 22-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 PP4_RS23760 7366f0d7a99b078cd1bc66adef11affc 185 PRINTS PR00773 GrpE protein signature 41 57 2.7E-26 T 22-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 PP4_RS23760 7366f0d7a99b078cd1bc66adef11affc 185 PRINTS PR00773 GrpE protein signature 69 84 2.7E-26 T 22-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 PP4_RS23760 7366f0d7a99b078cd1bc66adef11affc 185 PRINTS PR00773 GrpE protein signature 124 139 2.7E-26 T 22-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 PP4_RS23760 7366f0d7a99b078cd1bc66adef11affc 185 PRINTS PR00773 GrpE protein signature 151 170 2.7E-26 T 22-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 PP4_RS23760 7366f0d7a99b078cd1bc66adef11affc 185 Pfam PF01025 GrpE 12 172 3.2E-53 T 22-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 PP4_RS23760 7366f0d7a99b078cd1bc66adef11affc 185 SUPERFAMILY SSF51064 117 173 1.44E-19 T 22-04-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 PP4_RS23760 7366f0d7a99b078cd1bc66adef11affc 185 PANTHER PTHR21237 25 175 1.2E-66 T 22-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 PP4_RS23760 7366f0d7a99b078cd1bc66adef11affc 185 Hamap MF_01151 Protein GrpE [grpE]. 2 172 21.156 T 22-04-2016 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 PP4_RS23760 7366f0d7a99b078cd1bc66adef11affc 185 Gene3D G3DSA:2.30.22.10 117 174 7.3E-27 T 22-04-2016 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 PP4_RS23760 7366f0d7a99b078cd1bc66adef11affc 185 Gene3D G3DSA:3.90.20.20 22 114 3.9E-32 T 22-04-2016 IPR013805 GrpE nucleotide exchange factor, coiled-coil PP4_RS23760 7366f0d7a99b078cd1bc66adef11affc 185 SUPERFAMILY SSF58014 24 115 6.41E-28 T 22-04-2016 PP4_RS26330 a1d5d429fb4a5af9edc8371873cf1842 308 Gene3D G3DSA:3.40.50.1820 51 307 6.6E-35 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS26330 a1d5d429fb4a5af9edc8371873cf1842 308 Pfam PF12146 Serine aminopeptidase, S33 63 291 1.9E-32 T 22-04-2016 IPR022742 Serine aminopeptidase, S33 PP4_RS26330 a1d5d429fb4a5af9edc8371873cf1842 308 SUPERFAMILY SSF53474 51 307 1.23E-32 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS26330 a1d5d429fb4a5af9edc8371873cf1842 308 PANTHER PTHR11614 51 308 1.6E-35 T 22-04-2016 PP4_RS26330 a1d5d429fb4a5af9edc8371873cf1842 308 PRINTS PR00111 Alpha/beta hydrolase fold signature 141 154 2.7E-5 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS26330 a1d5d429fb4a5af9edc8371873cf1842 308 PRINTS PR00111 Alpha/beta hydrolase fold signature 249 263 2.7E-5 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS26330 a1d5d429fb4a5af9edc8371873cf1842 308 PRINTS PR00111 Alpha/beta hydrolase fold signature 92 107 2.7E-5 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS06470 72b0966fda5e8eb6bbc91ea977f749bb 412 Pfam PF04542 Sigma-70 region 2 15 81 4.7E-9 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS06470 72b0966fda5e8eb6bbc91ea977f749bb 412 Gene3D G3DSA:1.25.40.10 204 245 1.4E-5 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS06470 72b0966fda5e8eb6bbc91ea977f749bb 412 Gene3D G3DSA:1.25.40.10 326 398 1.4E-5 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS06470 72b0966fda5e8eb6bbc91ea977f749bb 412 PANTHER PTHR30173:SF7 1 383 5.6E-185 T 22-04-2016 PP4_RS06470 72b0966fda5e8eb6bbc91ea977f749bb 412 Gene3D G3DSA:1.10.10.10 107 167 1.4E-11 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS06470 72b0966fda5e8eb6bbc91ea977f749bb 412 SUPERFAMILY SSF88659 106 167 9.91E-10 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS06470 72b0966fda5e8eb6bbc91ea977f749bb 412 SUPERFAMILY SSF88946 9 93 2.63E-11 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS06470 72b0966fda5e8eb6bbc91ea977f749bb 412 Pfam PF08281 Sigma-70, region 4 114 165 1.0E-7 T 22-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS06470 72b0966fda5e8eb6bbc91ea977f749bb 412 PANTHER PTHR30173 1 383 5.6E-185 T 22-04-2016 PP4_RS06470 72b0966fda5e8eb6bbc91ea977f749bb 412 SUPERFAMILY SSF48452 204 245 1.01E-5 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS06470 72b0966fda5e8eb6bbc91ea977f749bb 412 SUPERFAMILY SSF48452 326 400 1.01E-5 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS06470 72b0966fda5e8eb6bbc91ea977f749bb 412 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 16 167 2.6E-12 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS06470 72b0966fda5e8eb6bbc91ea977f749bb 412 Gene3D G3DSA:1.10.1740.10 6 81 4.5E-10 T 22-04-2016 PP4_RS11205 e79397e3143fd6a6c1408caab1f0fc3d 747 PANTHER PTHR11908 87 743 8.2E-132 T 22-04-2016 PP4_RS11205 e79397e3143fd6a6c1408caab1f0fc3d 747 Gene3D G3DSA:3.90.1170.50 198 303 2.8E-19 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead PP4_RS11205 e79397e3143fd6a6c1408caab1f0fc3d 747 SUPERFAMILY SSF56003 20 257 5.58E-39 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS11205 e79397e3143fd6a6c1408caab1f0fc3d 747 SUPERFAMILY SSF56003 338 743 1.51E-99 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS11205 e79397e3143fd6a6c1408caab1f0fc3d 747 SMART SM01008 226 305 6.7E-22 T 22-04-2016 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead PP4_RS11205 e79397e3143fd6a6c1408caab1f0fc3d 747 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 610 689 1.6E-13 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS11205 e79397e3143fd6a6c1408caab1f0fc3d 747 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 36 199 3.5E-12 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS11205 e79397e3143fd6a6c1408caab1f0fc3d 747 Pfam PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase 338 571 1.5E-32 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS11205 e79397e3143fd6a6c1408caab1f0fc3d 747 Gene3D G3DSA:3.30.365.10 51 190 1.9E-30 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS11205 e79397e3143fd6a6c1408caab1f0fc3d 747 Gene3D G3DSA:3.30.365.10 545 742 9.6E-37 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS11205 e79397e3143fd6a6c1408caab1f0fc3d 747 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 22 45 8.5E-4 T 22-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal PP4_RS11205 e79397e3143fd6a6c1408caab1f0fc3d 747 PIRSF PIRSF036389 12 747 2.5E-264 T 22-04-2016 IPR012368 Oxidoreductase molybdopterin-binding subunit, IorB-related PP4_RS11205 e79397e3143fd6a6c1408caab1f0fc3d 747 PANTHER PTHR11908:SF2 87 743 8.2E-132 T 22-04-2016 PP4_RS11205 e79397e3143fd6a6c1408caab1f0fc3d 747 Gene3D G3DSA:3.30.365.10 339 458 2.0E-27 T 22-04-2016 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding GO:0016491|GO:0055114 PP4_RS06215 2a12a82980b95a40c58cd856b1c01476 439 PANTHER PTHR13847:SF196 1 432 1.4E-123 T 22-04-2016 PP4_RS06215 2a12a82980b95a40c58cd856b1c01476 439 Gene3D G3DSA:3.50.50.60 179 257 2.1E-37 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS06215 2a12a82980b95a40c58cd856b1c01476 439 Gene3D G3DSA:3.50.50.60 24 126 2.1E-37 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS06215 2a12a82980b95a40c58cd856b1c01476 439 Gene3D G3DSA:3.50.50.60 356 401 2.1E-37 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS06215 2a12a82980b95a40c58cd856b1c01476 439 Pfam PF01266 FAD dependent oxidoreductase 37 393 1.2E-44 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PP4_RS06215 2a12a82980b95a40c58cd856b1c01476 439 PANTHER PTHR13847 1 432 1.4E-123 T 22-04-2016 PP4_RS06215 2a12a82980b95a40c58cd856b1c01476 439 SUPERFAMILY SSF51905 36 258 1.08E-35 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS06215 2a12a82980b95a40c58cd856b1c01476 439 SUPERFAMILY SSF51905 366 401 1.08E-35 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS01045 ca8266ffe0595e5287cd36d4ec4329c8 411 Pfam PF13519 von Willebrand factor type A domain 205 338 1.8E-6 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS01045 ca8266ffe0595e5287cd36d4ec4329c8 411 SUPERFAMILY SSF53300 203 213 1.0E-14 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS01045 ca8266ffe0595e5287cd36d4ec4329c8 411 SUPERFAMILY SSF53300 246 398 1.0E-14 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS01045 ca8266ffe0595e5287cd36d4ec4329c8 411 Gene3D G3DSA:3.40.50.410 204 213 1.8E-8 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS01045 ca8266ffe0595e5287cd36d4ec4329c8 411 Gene3D G3DSA:3.40.50.410 248 398 1.8E-8 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS16215 ee7b017b937e6edf84ae51048ffae2f8 235 TIGRFAM TIGR03371 cellulose_yhjQ: cellulose synthase operon protein YhjQ 1 231 1.1E-49 T 22-04-2016 IPR017746 Cellulose synthase operon protein BcsQ PP4_RS16215 ee7b017b937e6edf84ae51048ffae2f8 235 Pfam PF06564 Cellulose biosynthesis protein BcsQ 1 230 8.4E-81 T 22-04-2016 IPR017746 Cellulose synthase operon protein BcsQ PP4_RS16215 ee7b017b937e6edf84ae51048ffae2f8 235 Gene3D G3DSA:3.40.50.300 8 232 2.4E-23 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS16215 ee7b017b937e6edf84ae51048ffae2f8 235 SUPERFAMILY SSF52540 3 233 5.94E-24 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS01020 826977b4a160a9db2d4a450b73ac74fe 152 Gene3D G3DSA:3.90.960.10 7 144 6.4E-22 T 22-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 PP4_RS01020 826977b4a160a9db2d4a450b73ac74fe 152 Pfam PF04073 Aminoacyl-tRNA editing domain 23 142 2.7E-21 T 22-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 PP4_RS01020 826977b4a160a9db2d4a450b73ac74fe 152 SUPERFAMILY SSF55826 7 144 5.76E-29 T 22-04-2016 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 PP4_RS15040 c58f2b3cdfd56f575720d421633069e0 315 Gene3D G3DSA:3.40.190.10 107 203 3.4E-17 T 22-04-2016 PP4_RS15040 c58f2b3cdfd56f575720d421633069e0 315 PANTHER PTHR30126:SF3 19 315 1.1E-67 T 22-04-2016 PP4_RS15040 c58f2b3cdfd56f575720d421633069e0 315 Pfam PF03466 LysR substrate binding domain 106 314 1.6E-32 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS15040 c58f2b3cdfd56f575720d421633069e0 315 SUPERFAMILY SSF46785 18 122 3.18E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS15040 c58f2b3cdfd56f575720d421633069e0 315 Gene3D G3DSA:3.40.190.10 204 286 2.3E-9 T 22-04-2016 PP4_RS15040 c58f2b3cdfd56f575720d421633069e0 315 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 23 81 1.4E-15 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS15040 c58f2b3cdfd56f575720d421633069e0 315 PANTHER PTHR30126 19 315 1.1E-67 T 22-04-2016 PP4_RS15040 c58f2b3cdfd56f575720d421633069e0 315 SUPERFAMILY SSF53850 107 315 1.78E-33 T 22-04-2016 PP4_RS15040 c58f2b3cdfd56f575720d421633069e0 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 58 69 2.1E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS15040 c58f2b3cdfd56f575720d421633069e0 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 37 48 2.1E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS15040 c58f2b3cdfd56f575720d421633069e0 315 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 48 58 2.1E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS15040 c58f2b3cdfd56f575720d421633069e0 315 Gene3D G3DSA:1.10.10.10 21 105 2.7E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS24740 07ac40ba4a8f226836ec5df773604cf9 688 TIGRFAM TIGR01778 TonB-copper: TonB-dependent copper receptor 61 688 1.0E-292 T 22-04-2016 IPR010100 TonB-dependent copper receptor PP4_RS24740 07ac40ba4a8f226836ec5df773604cf9 688 SUPERFAMILY SSF56935 56 688 4.88E-92 T 22-04-2016 PP4_RS24740 07ac40ba4a8f226836ec5df773604cf9 688 Pfam PF07715 TonB-dependent Receptor Plug Domain 58 160 1.3E-12 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS24740 07ac40ba4a8f226836ec5df773604cf9 688 Pfam PF00593 TonB dependent receptor 428 686 1.8E-29 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS24740 07ac40ba4a8f226836ec5df773604cf9 688 Gene3D G3DSA:2.40.170.20 162 688 2.2E-77 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS24740 07ac40ba4a8f226836ec5df773604cf9 688 PANTHER PTHR32552:SF12 14 688 5.3E-280 T 22-04-2016 PP4_RS24740 07ac40ba4a8f226836ec5df773604cf9 688 PANTHER PTHR32552 14 688 5.3E-280 T 22-04-2016 PP4_RS24740 07ac40ba4a8f226836ec5df773604cf9 688 Gene3D G3DSA:2.170.130.10 70 161 3.6E-15 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS17260 83921c2e54351000b05b22fcd7cf15d8 194 SUPERFAMILY SSF117916 98 187 2.83E-25 T 22-04-2016 PP4_RS17260 83921c2e54351000b05b22fcd7cf15d8 194 PANTHER PTHR10072 150 191 1.1E-78 T 22-04-2016 PP4_RS17260 83921c2e54351000b05b22fcd7cf15d8 194 PANTHER PTHR10072 1 100 1.1E-78 T 22-04-2016 PP4_RS17260 83921c2e54351000b05b22fcd7cf15d8 194 TIGRFAM TIGR03341 YhgI_GntY: IscR-regulated protein YhgI 4 194 2.4E-93 T 22-04-2016 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 PP4_RS17260 83921c2e54351000b05b22fcd7cf15d8 194 Hamap MF_01637 Fe/S biogenesis protein NfuA [nfuA]. 3 194 43.248 T 22-04-2016 IPR017726 Fe/S biogenesis protein NfuA GO:0016226|GO:0051539|GO:0051604 PP4_RS17260 83921c2e54351000b05b22fcd7cf15d8 194 Pfam PF01106 NifU-like domain 114 180 4.5E-21 T 22-04-2016 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 PP4_RS17260 83921c2e54351000b05b22fcd7cf15d8 194 Gene3D G3DSA:2.60.300.12 3 97 7.1E-15 T 22-04-2016 IPR000361 FeS cluster biogenesis PP4_RS17260 83921c2e54351000b05b22fcd7cf15d8 194 PANTHER PTHR10072:SF37 150 191 1.1E-78 T 22-04-2016 PP4_RS17260 83921c2e54351000b05b22fcd7cf15d8 194 PANTHER PTHR10072:SF37 1 100 1.1E-78 T 22-04-2016 PP4_RS17260 83921c2e54351000b05b22fcd7cf15d8 194 SUPERFAMILY SSF89360 4 100 1.31E-19 T 22-04-2016 IPR000361 FeS cluster biogenesis PP4_RS17260 83921c2e54351000b05b22fcd7cf15d8 194 ProDom PD002830 NIFU NIFU NITROGEN-FIXING C-TERMINAL FIXATION NITROGEN NIFU-LIKE DOMAIN CLUSTER HESB/YADR/YFHF:NITROGEN-FIXING 121 180 9.0E-21 T 22-04-2016 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal GO:0005506|GO:0016226|GO:0051536 PP4_RS17260 83921c2e54351000b05b22fcd7cf15d8 194 Pfam PF01521 Iron-sulphur cluster biosynthesis 4 100 2.0E-7 T 22-04-2016 IPR000361 FeS cluster biogenesis PP4_RS16575 09954bca19f93b56365a8aaaacd4ab3f 838 SUPERFAMILY SSF52540 495 805 4.09E-52 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS16575 09954bca19f93b56365a8aaaacd4ab3f 838 SUPERFAMILY SSF52540 142 297 4.09E-52 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS16575 09954bca19f93b56365a8aaaacd4ab3f 838 Gene3D G3DSA:3.40.50.300 505 623 1.0E-36 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS16575 09954bca19f93b56365a8aaaacd4ab3f 838 Gene3D G3DSA:3.40.50.300 142 308 1.0E-36 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS16575 09954bca19f93b56365a8aaaacd4ab3f 838 Gene3D G3DSA:3.40.50.300 634 810 7.5E-18 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS16575 09954bca19f93b56365a8aaaacd4ab3f 838 PANTHER PTHR11070 139 317 7.4E-35 T 22-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 PP4_RS16575 09954bca19f93b56365a8aaaacd4ab3f 838 PANTHER PTHR11070 589 805 7.4E-35 T 22-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 PP4_RS16575 09954bca19f93b56365a8aaaacd4ab3f 838 PANTHER PTHR11070 470 571 7.4E-35 T 22-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 PP4_RS16575 09954bca19f93b56365a8aaaacd4ab3f 838 Pfam PF00580 UvrD/REP helicase N-terminal domain 146 212 1.6E-6 T 22-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 PP4_RS16575 09954bca19f93b56365a8aaaacd4ab3f 838 Pfam PF00580 UvrD/REP helicase N-terminal domain 550 621 5.4E-11 T 22-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 PP4_RS01570 95879fd222532d8c61ca527448b55fc7 461 PANTHER PTHR11785 4 452 3.7E-249 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS01570 95879fd222532d8c61ca527448b55fc7 461 TIGRFAM TIGR01773 GABAperm: GABA permease 6 450 5.6E-224 T 22-04-2016 IPR011265 GABA permease GO:0015185|GO:0015812|GO:0016021 PP4_RS01570 95879fd222532d8c61ca527448b55fc7 461 PIRSF PIRSF006060 2 457 9.9E-76 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS01570 95879fd222532d8c61ca527448b55fc7 461 ProSitePatterns PS00218 Amino acid permeases signature. 42 72 - T 22-04-2016 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 PP4_RS01570 95879fd222532d8c61ca527448b55fc7 461 Pfam PF00324 Amino acid permease 17 425 1.2E-118 T 22-04-2016 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 PP4_RS01570 95879fd222532d8c61ca527448b55fc7 461 PANTHER PTHR11785:SF24 4 452 3.7E-249 T 22-04-2016 PP4_RS02935 09199ca7793ab64022ae94a827eb3208 725 PANTHER PTHR32552:SF37 21 52 3.3E-129 T 22-04-2016 PP4_RS02935 09199ca7793ab64022ae94a827eb3208 725 PANTHER PTHR32552:SF37 76 725 3.3E-129 T 22-04-2016 PP4_RS02935 09199ca7793ab64022ae94a827eb3208 725 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 86 725 5.0E-102 T 22-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 PP4_RS02935 09199ca7793ab64022ae94a827eb3208 725 PANTHER PTHR32552 21 52 3.3E-129 T 22-04-2016 PP4_RS02935 09199ca7793ab64022ae94a827eb3208 725 PANTHER PTHR32552 76 725 3.3E-129 T 22-04-2016 PP4_RS02935 09199ca7793ab64022ae94a827eb3208 725 Pfam PF00593 TonB dependent receptor 488 723 6.3E-32 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS02935 09199ca7793ab64022ae94a827eb3208 725 SUPERFAMILY SSF56935 44 725 7.85E-116 T 22-04-2016 PP4_RS02935 09199ca7793ab64022ae94a827eb3208 725 Pfam PF07715 TonB-dependent Receptor Plug Domain 84 183 3.4E-11 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS02935 09199ca7793ab64022ae94a827eb3208 725 Gene3D G3DSA:2.40.170.20 197 725 2.8E-128 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS02935 09199ca7793ab64022ae94a827eb3208 725 Gene3D G3DSA:2.170.130.10 65 190 1.2E-27 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS07420 60c9795b3da4c664886c474ffa80ca50 135 PANTHER PTHR33337:SF4 3 115 8.1E-15 T 22-04-2016 PP4_RS07420 60c9795b3da4c664886c474ffa80ca50 135 SUPERFAMILY SSF51316 2 127 1.15E-38 T 22-04-2016 IPR011057 Mss4-like PP4_RS07420 60c9795b3da4c664886c474ffa80ca50 135 Gene3D G3DSA:3.90.1590.10 2 130 2.6E-37 T 22-04-2016 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 PP4_RS07420 60c9795b3da4c664886c474ffa80ca50 135 PANTHER PTHR33337 3 115 8.1E-15 T 22-04-2016 PP4_RS07420 60c9795b3da4c664886c474ffa80ca50 135 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 27 110 1.5E-16 T 22-04-2016 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 PP4_RS26825 e6d7fd9f53734c1cd3f582a88f03db82 464 PANTHER PTHR39479:SF2 1 464 1.7E-254 T 22-04-2016 PP4_RS26825 e6d7fd9f53734c1cd3f582a88f03db82 464 PANTHER PTHR39479 1 464 1.7E-254 T 22-04-2016 PP4_RS26825 e6d7fd9f53734c1cd3f582a88f03db82 464 Pfam PF07063 Domain of unknown function (DUF1338) 12 412 1.3E-121 T 22-04-2016 IPR009770 Domain of unknown function DUF1338 PP4_RS26825 e6d7fd9f53734c1cd3f582a88f03db82 464 SMART SM01150 13 412 8.5E-236 T 22-04-2016 IPR009770 Domain of unknown function DUF1338 PP4_RS04915 8d3a1c127d3a0d4b43e73c7db6fe2b53 504 PANTHER PTHR35342 2 504 6.9E-285 T 22-04-2016 PP4_RS04915 8d3a1c127d3a0d4b43e73c7db6fe2b53 504 PANTHER PTHR35342:SF4 2 504 6.9E-285 T 22-04-2016 PP4_RS04915 8d3a1c127d3a0d4b43e73c7db6fe2b53 504 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 440 2.1E-138 T 22-04-2016 IPR002823 Protein of unknown function DUF112, transmembrane PP4_RS03055 7e8e642bfa8daf7e45da4873f021bcbc 562 PANTHER PTHR30445 3 561 2.4E-173 T 22-04-2016 PP4_RS03055 7e8e642bfa8daf7e45da4873f021bcbc 562 PANTHER PTHR30445:SF2 3 561 2.4E-173 T 22-04-2016 PP4_RS03055 7e8e642bfa8daf7e45da4873f021bcbc 562 Pfam PF02080 TrkA-C domain 229 287 9.7E-7 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PP4_RS03055 7e8e642bfa8daf7e45da4873f021bcbc 562 Pfam PF02080 TrkA-C domain 309 374 2.1E-7 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PP4_RS03055 7e8e642bfa8daf7e45da4873f021bcbc 562 SUPERFAMILY SSF116726 289 375 1.57E-8 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PP4_RS03055 7e8e642bfa8daf7e45da4873f021bcbc 562 SUPERFAMILY SSF116726 228 289 1.96E-7 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PP4_RS03055 7e8e642bfa8daf7e45da4873f021bcbc 562 TIGRFAM TIGR01625 YidE_YbjL_dupl: AspT/YidE/YbjL antiporter duplication domain 393 544 4.3E-23 T 22-04-2016 IPR006512 YidE/YbjL duplication PP4_RS03055 7e8e642bfa8daf7e45da4873f021bcbc 562 Pfam PF06826 Predicted Permease Membrane Region 16 179 1.7E-33 T 22-04-2016 IPR006512 YidE/YbjL duplication PP4_RS03055 7e8e642bfa8daf7e45da4873f021bcbc 562 Pfam PF06826 Predicted Permease Membrane Region 390 557 7.4E-33 T 22-04-2016 IPR006512 YidE/YbjL duplication PP4_RS03055 7e8e642bfa8daf7e45da4873f021bcbc 562 Gene3D G3DSA:3.30.70.1450 229 290 1.6E-6 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PP4_RS03055 7e8e642bfa8daf7e45da4873f021bcbc 562 Gene3D G3DSA:3.30.70.1450 305 375 2.8E-6 T 22-04-2016 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 PP4_RS03055 7e8e642bfa8daf7e45da4873f021bcbc 562 TIGRFAM TIGR03802 Asp_Ala_antiprt: aspartate-alanine antiporter 3 559 6.1E-171 T 22-04-2016 IPR022457 Aspartate-alanine antiporter GO:0005215|GO:0016020 PP4_RS20200 038f3172e4f700970be26ffd6874147b 261 Pfam PF14518 Iron-containing redox enzyme 55 219 4.8E-13 T 22-04-2016 IPR028201 PqqC-like protein PP4_RS20200 038f3172e4f700970be26ffd6874147b 261 Gene3D G3DSA:1.20.910.10 18 248 5.6E-56 T 22-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 PP4_RS20200 038f3172e4f700970be26ffd6874147b 261 SUPERFAMILY SSF48613 19 243 4.64E-46 T 22-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 PP4_RS11420 28ec94a061b16d6296706a86c0671c4c 319 Pfam PF16220 Domain of unknown function (DUF4880) 13 53 1.4E-9 T 22-04-2016 IPR032623 FecR, N-terminal PP4_RS11420 28ec94a061b16d6296706a86c0671c4c 319 PANTHER PTHR30273:SF3 5 316 6.9E-64 T 22-04-2016 PP4_RS11420 28ec94a061b16d6296706a86c0671c4c 319 PIRSF PIRSF018266 2 315 3.6E-71 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS11420 28ec94a061b16d6296706a86c0671c4c 319 PANTHER PTHR30273 5 316 6.9E-64 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS11420 28ec94a061b16d6296706a86c0671c4c 319 Pfam PF04773 FecR protein 110 201 9.3E-11 T 22-04-2016 IPR006860 FecR protein PP4_RS06085 bf38f9a4faebfe19796e527c41456490 111 PANTHER PTHR33154:SF12 1 109 2.4E-30 T 22-04-2016 PP4_RS06085 bf38f9a4faebfe19796e527c41456490 111 SMART SM00418 28 105 1.1E-17 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 PP4_RS06085 bf38f9a4faebfe19796e527c41456490 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 76 91 2.6E-9 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 PP4_RS06085 bf38f9a4faebfe19796e527c41456490 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 61 76 2.6E-9 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 PP4_RS06085 bf38f9a4faebfe19796e527c41456490 111 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 30 45 2.6E-9 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 PP4_RS06085 bf38f9a4faebfe19796e527c41456490 111 SUPERFAMILY SSF46785 9 105 1.01E-17 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS06085 bf38f9a4faebfe19796e527c41456490 111 PANTHER PTHR33154 1 109 2.4E-30 T 22-04-2016 PP4_RS06085 bf38f9a4faebfe19796e527c41456490 111 Pfam PF12840 Helix-turn-helix domain 28 84 2.5E-15 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS06085 bf38f9a4faebfe19796e527c41456490 111 Gene3D G3DSA:1.10.10.10 19 106 2.0E-17 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS09060 e4369911fc8e68ade34373aef42e0f9d 213 PANTHER PTHR11080:SF38 1 209 1.3E-72 T 22-04-2016 PP4_RS09060 e4369911fc8e68ade34373aef42e0f9d 213 SUPERFAMILY SSF52499 18 210 1.57E-51 T 22-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PP4_RS09060 e4369911fc8e68ade34373aef42e0f9d 213 Pfam PF00857 Isochorismatase family 26 202 2.1E-35 T 22-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PP4_RS09060 e4369911fc8e68ade34373aef42e0f9d 213 PANTHER PTHR11080 1 209 1.3E-72 T 22-04-2016 PP4_RS09060 e4369911fc8e68ade34373aef42e0f9d 213 Gene3D G3DSA:3.40.50.850 21 210 4.5E-51 T 22-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PP4_RS08375 bb3cb5cff0b7e78443b6690cdf408cf9 480 PANTHER PTHR11814:SF76 3 477 6.0E-151 T 22-04-2016 PP4_RS08375 bb3cb5cff0b7e78443b6690cdf408cf9 480 PANTHER PTHR11814 3 477 6.0E-151 T 22-04-2016 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 Reactome: REACT_15518 PP4_RS08375 bb3cb5cff0b7e78443b6690cdf408cf9 480 Gene3D G3DSA:3.30.750.24 394 477 1.3E-13 T 22-04-2016 IPR002645 STAS domain PP4_RS08375 bb3cb5cff0b7e78443b6690cdf408cf9 480 Pfam PF13466 STAS domain 403 477 5.9E-10 T 22-04-2016 IPR002645 STAS domain PP4_RS08375 bb3cb5cff0b7e78443b6690cdf408cf9 480 Pfam PF00916 Sulfate permease family 6 354 1.8E-48 T 22-04-2016 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 PP4_RS08375 bb3cb5cff0b7e78443b6690cdf408cf9 480 SUPERFAMILY SSF52091 394 477 6.28E-14 T 22-04-2016 IPR002645 STAS domain PP4_RS12620 879f600a87601269eb54712083c0155b 301 SUPERFAMILY SSF53850 91 291 4.65E-40 T 22-04-2016 PP4_RS12620 879f600a87601269eb54712083c0155b 301 Gene3D G3DSA:3.40.190.10 90 175 4.0E-19 T 22-04-2016 PP4_RS12620 879f600a87601269eb54712083c0155b 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 7.7E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS12620 879f600a87601269eb54712083c0155b 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 7.7E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS12620 879f600a87601269eb54712083c0155b 301 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 7.7E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS12620 879f600a87601269eb54712083c0155b 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 5.1E-20 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS12620 879f600a87601269eb54712083c0155b 301 SUPERFAMILY SSF46785 1 110 6.62E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS12620 879f600a87601269eb54712083c0155b 301 PANTHER PTHR30419 1 296 1.3E-99 T 22-04-2016 PP4_RS12620 879f600a87601269eb54712083c0155b 301 PANTHER PTHR30419:SF3 1 296 1.3E-99 T 22-04-2016 PP4_RS12620 879f600a87601269eb54712083c0155b 301 Pfam PF03466 LysR substrate binding domain 91 290 1.5E-38 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS12620 879f600a87601269eb54712083c0155b 301 Gene3D G3DSA:3.40.190.10 176 266 6.3E-21 T 22-04-2016 PP4_RS12620 879f600a87601269eb54712083c0155b 301 Gene3D G3DSA:1.10.10.10 1 84 3.5E-28 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS12230 7cdc38328be26bac1568d82affcc6f76 166 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 78 157 3.3E-35 T 22-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 PP4_RS12230 7cdc38328be26bac1568d82affcc6f76 166 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 79 158 8.4E-33 T 22-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 PP4_RS12230 7cdc38328be26bac1568d82affcc6f76 166 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 6 73 6.6E-8 T 22-04-2016 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 PP4_RS12230 7cdc38328be26bac1568d82affcc6f76 166 Gene3D G3DSA:1.10.10.10 77 159 3.7E-35 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS12230 7cdc38328be26bac1568d82affcc6f76 166 PANTHER PTHR10815 5 158 1.7E-57 T 22-04-2016 PP4_RS12230 7cdc38328be26bac1568d82affcc6f76 166 SUPERFAMILY SSF53155 5 83 1.39E-16 T 22-04-2016 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 PP4_RS12230 7cdc38328be26bac1568d82affcc6f76 166 SUPERFAMILY SSF46767 77 158 1.7E-32 T 22-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 PP4_RS12230 7cdc38328be26bac1568d82affcc6f76 166 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 3 160 37.166 T 22-04-2016 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 PP4_RS12230 7cdc38328be26bac1568d82affcc6f76 166 PANTHER PTHR10815:SF5 5 158 1.7E-57 T 22-04-2016 PP4_RS06190 af93e9a4f147aa7e55bc631ed4a50c6b 197 PANTHER PTHR23026 7 196 1.8E-21 T 22-04-2016 PP4_RS06190 af93e9a4f147aa7e55bc631ed4a50c6b 197 Pfam PF00881 Nitroreductase family 18 61 4.7E-14 T 22-04-2016 IPR029479 Nitroreductase PP4_RS06190 af93e9a4f147aa7e55bc631ed4a50c6b 197 Gene3D G3DSA:3.40.109.10 8 193 5.0E-48 T 22-04-2016 IPR000415 Nitroreductase-like GO:0016491 PP4_RS06190 af93e9a4f147aa7e55bc631ed4a50c6b 197 SUPERFAMILY SSF55469 6 194 2.09E-48 T 22-04-2016 IPR000415 Nitroreductase-like GO:0016491 PP4_RS18860 786b344f713c35bcb354baa5002206da 114 PANTHER PTHR38778 2 112 1.3E-41 T 22-04-2016 PP4_RS18860 786b344f713c35bcb354baa5002206da 114 PANTHER PTHR38778:SF1 2 112 1.3E-41 T 22-04-2016 PP4_RS18860 786b344f713c35bcb354baa5002206da 114 Pfam PF04320 Protein with unknown function (DUF469) 7 105 1.7E-36 T 22-04-2016 IPR007416 Protein of unknown function DUF469 PP4_RS09940 c5e53e4272aca3ea16c40e1447c5d1e3 719 Gene3D G3DSA:2.40.170.20 168 718 8.7E-90 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS09940 c5e53e4272aca3ea16c40e1447c5d1e3 719 Pfam PF00593 TonB dependent receptor 462 717 9.3E-29 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS09940 c5e53e4272aca3ea16c40e1447c5d1e3 719 PANTHER PTHR32552:SF33 27 719 4.4E-89 T 22-04-2016 PP4_RS09940 c5e53e4272aca3ea16c40e1447c5d1e3 719 SUPERFAMILY SSF56935 34 718 3.66E-118 T 22-04-2016 PP4_RS09940 c5e53e4272aca3ea16c40e1447c5d1e3 719 Gene3D G3DSA:2.170.130.10 30 167 1.6E-30 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS09940 c5e53e4272aca3ea16c40e1447c5d1e3 719 PANTHER PTHR32552 27 719 4.4E-89 T 22-04-2016 PP4_RS09940 c5e53e4272aca3ea16c40e1447c5d1e3 719 Pfam PF07715 TonB-dependent Receptor Plug Domain 51 158 1.5E-15 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS06455 14dc01d4345076dac9da7909ba7f92fc 141 PANTHER PTHR35174 9 120 4.1E-25 T 22-04-2016 PP4_RS06455 14dc01d4345076dac9da7909ba7f92fc 141 PANTHER PTHR35174:SF3 9 120 4.1E-25 T 22-04-2016 PP4_RS06455 14dc01d4345076dac9da7909ba7f92fc 141 Pfam PF13474 SnoaL-like domain 9 128 1.9E-18 T 22-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain PP4_RS06455 14dc01d4345076dac9da7909ba7f92fc 141 Gene3D G3DSA:3.10.450.50 5 125 9.7E-26 T 22-04-2016 IPR032710 NTF2-like domain PP4_RS06455 14dc01d4345076dac9da7909ba7f92fc 141 SUPERFAMILY SSF54427 3 127 2.56E-29 T 22-04-2016 IPR032710 NTF2-like domain PP4_RS12415 5c2f43860ed67df210026835c8036923 606 PANTHER PTHR35370:SF1 3 606 7.8E-150 T 22-04-2016 PP4_RS12415 5c2f43860ed67df210026835c8036923 606 Pfam PF05947 Type VI secretion system, ImpG, VasA, VC_A0110 6 605 5.9E-214 T 22-04-2016 IPR010272 Type VI secretion system, TssF-like PP4_RS12415 5c2f43860ed67df210026835c8036923 606 PANTHER PTHR35370 3 606 7.8E-150 T 22-04-2016 PP4_RS12415 5c2f43860ed67df210026835c8036923 606 TIGRFAM TIGR03359 VI_chp_6: type VI secretion protein, TIGR03359 family 5 606 2.7E-212 T 22-04-2016 IPR010272 Type VI secretion system, TssF-like PP4_RS12415 5c2f43860ed67df210026835c8036923 606 PIRSF PIRSF028304 1 606 9.0E-187 T 22-04-2016 IPR010272 Type VI secretion system, TssF-like PP4_RS07900 691977dad9c6a058963b24a77fd6f30c 656 Pfam PF12704 MacB-like periplasmic core domain 283 500 5.0E-34 T 22-04-2016 IPR025857 MacB-like periplasmic core domain PP4_RS07900 691977dad9c6a058963b24a77fd6f30c 656 SMART SM00382 35 222 4.0E-17 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS07900 691977dad9c6a058963b24a77fd6f30c 656 SUPERFAMILY SSF52540 5 228 4.93E-65 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS07900 691977dad9c6a058963b24a77fd6f30c 656 ProSitePatterns PS00211 ABC transporters family signature. 147 161 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS07900 691977dad9c6a058963b24a77fd6f30c 656 Gene3D G3DSA:3.40.50.300 4 225 7.0E-68 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS07900 691977dad9c6a058963b24a77fd6f30c 656 PANTHER PTHR24220 628 639 6.3E-97 T 22-04-2016 PP4_RS07900 691977dad9c6a058963b24a77fd6f30c 656 PANTHER PTHR24220 7 237 6.3E-97 T 22-04-2016 PP4_RS07900 691977dad9c6a058963b24a77fd6f30c 656 Pfam PF02687 FtsX-like permease family 538 649 8.6E-18 T 22-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 PP4_RS07900 691977dad9c6a058963b24a77fd6f30c 656 PANTHER PTHR24220:SF578 628 639 6.3E-97 T 22-04-2016 PP4_RS07900 691977dad9c6a058963b24a77fd6f30c 656 PANTHER PTHR24220:SF578 7 237 6.3E-97 T 22-04-2016 PP4_RS07900 691977dad9c6a058963b24a77fd6f30c 656 Pfam PF00005 ABC transporter 26 174 8.1E-30 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS12520 aae9970f55fe6ca80f9db23d85a1ed73 257 Pfam PF03527 RHS protein 155 189 4.4E-19 T 22-04-2016 IPR001826 RHS protein PP4_RS12520 aae9970f55fe6ca80f9db23d85a1ed73 257 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 182 257 1.8E-23 T 22-04-2016 IPR022385 Rhs repeat-associated core GO:0097264 PP4_RS12520 aae9970f55fe6ca80f9db23d85a1ed73 257 PRINTS PR00394 RHS protein signature 203 223 7.9E-14 T 22-04-2016 IPR001826 RHS protein PP4_RS12520 aae9970f55fe6ca80f9db23d85a1ed73 257 PRINTS PR00394 RHS protein signature 149 169 7.9E-14 T 22-04-2016 IPR001826 RHS protein PP4_RS12520 aae9970f55fe6ca80f9db23d85a1ed73 257 PRINTS PR00394 RHS protein signature 226 245 7.9E-14 T 22-04-2016 IPR001826 RHS protein PP4_RS12520 aae9970f55fe6ca80f9db23d85a1ed73 257 PANTHER PTHR11219:SF49 9 257 4.4E-56 T 22-04-2016 PP4_RS12520 aae9970f55fe6ca80f9db23d85a1ed73 257 PANTHER PTHR11219 9 257 4.4E-56 T 22-04-2016 PP4_RS26140 331f0a3de8d5dbd008570d207dca8e02 83 PANTHER PTHR24960:SF38 1 79 3.8E-29 T 22-04-2016 PP4_RS26140 331f0a3de8d5dbd008570d207dca8e02 83 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 9 20 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PP4_RS26140 331f0a3de8d5dbd008570d207dca8e02 83 PANTHER PTHR24960 1 79 3.8E-29 T 22-04-2016 PP4_RS26140 331f0a3de8d5dbd008570d207dca8e02 83 Gene3D G3DSA:3.30.70.20 4 75 3.0E-19 T 22-04-2016 PP4_RS26140 331f0a3de8d5dbd008570d207dca8e02 83 Pfam PF00037 4Fe-4S binding domain 4 25 6.5E-6 T 22-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PP4_RS26140 331f0a3de8d5dbd008570d207dca8e02 83 SUPERFAMILY SSF54862 4 77 1.17E-19 T 22-04-2016 PP4_RS17640 c05ab50ce6f8b0a7d90769e237fae52e 346 PANTHER PTHR14226 3 185 7.4E-95 T 22-04-2016 PP4_RS17640 c05ab50ce6f8b0a7d90769e237fae52e 346 PANTHER PTHR14226 242 342 7.4E-95 T 22-04-2016 PP4_RS17640 c05ab50ce6f8b0a7d90769e237fae52e 346 Pfam PF01734 Patatin-like phospholipase 7 163 3.0E-14 T 22-04-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 PP4_RS17640 c05ab50ce6f8b0a7d90769e237fae52e 346 Gene3D G3DSA:3.40.1090.10 7 168 1.7E-7 T 22-04-2016 PP4_RS17640 c05ab50ce6f8b0a7d90769e237fae52e 346 PANTHER PTHR14226:SF24 3 185 7.4E-95 T 22-04-2016 PP4_RS17640 c05ab50ce6f8b0a7d90769e237fae52e 346 PANTHER PTHR14226:SF24 242 342 7.4E-95 T 22-04-2016 PP4_RS17640 c05ab50ce6f8b0a7d90769e237fae52e 346 SUPERFAMILY SSF52151 260 340 7.59E-51 T 22-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 PP4_RS17640 c05ab50ce6f8b0a7d90769e237fae52e 346 SUPERFAMILY SSF52151 3 178 7.59E-51 T 22-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 PP4_RS13580 e4e609ed9191901b0bca5073269606b3 303 Pfam PF00378 Enoyl-CoA hydratase/isomerase 28 262 3.1E-38 T 22-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 PP4_RS13580 e4e609ed9191901b0bca5073269606b3 303 SUPERFAMILY SSF52096 16 277 5.83E-67 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS13580 e4e609ed9191901b0bca5073269606b3 303 PANTHER PTHR11941 8 88 3.0E-82 T 22-04-2016 PP4_RS13580 e4e609ed9191901b0bca5073269606b3 303 PANTHER PTHR11941 107 262 3.0E-82 T 22-04-2016 PP4_RS13580 e4e609ed9191901b0bca5073269606b3 303 PANTHER PTHR11941:SF85 8 88 3.0E-82 T 22-04-2016 PP4_RS13580 e4e609ed9191901b0bca5073269606b3 303 PANTHER PTHR11941:SF85 107 262 3.0E-82 T 22-04-2016 PP4_RS13580 e4e609ed9191901b0bca5073269606b3 303 Gene3D G3DSA:3.90.226.10 15 261 8.5E-66 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS23500 057df667d3ff27870df8a057d2bfa715 110 SUPERFAMILY SSF158452 8 107 4.18E-35 T 22-04-2016 IPR023376 YqcC-like domain PP4_RS23500 057df667d3ff27870df8a057d2bfa715 110 Pfam PF04287 tRNA pseudouridine synthase C 9 105 1.5E-33 T 22-04-2016 IPR023376 YqcC-like domain PP4_RS23500 057df667d3ff27870df8a057d2bfa715 110 Gene3D G3DSA:1.20.1440.40 8 106 4.5E-34 T 22-04-2016 IPR023376 YqcC-like domain PP4_RS23500 057df667d3ff27870df8a057d2bfa715 110 PANTHER PTHR39586 4 110 3.2E-29 T 22-04-2016 PP4_RS23500 057df667d3ff27870df8a057d2bfa715 110 PIRSF PIRSF006257 3 110 9.2E-40 T 22-04-2016 IPR007384 Protein of unknown function UCP006257 PP4_RS20320 c08c5e3215c5353487a5297d8aa204ae 554 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 67 471 4.6E-63 T 22-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 PP4_RS20320 c08c5e3215c5353487a5297d8aa204ae 554 ProSitePatterns PS00457 Sodium:solute symporter family signature 2. 455 475 - T 22-04-2016 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 PP4_RS20320 c08c5e3215c5353487a5297d8aa204ae 554 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 182 207 - T 22-04-2016 IPR018212 Sodium/solute symporter, conserved site GO:0005215|GO:0006810|GO:0016020 PP4_RS20320 c08c5e3215c5353487a5297d8aa204ae 554 Pfam PF00474 Sodium:solute symporter family 67 473 9.0E-129 T 22-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 PP4_RS20320 c08c5e3215c5353487a5297d8aa204ae 554 PANTHER PTHR11819:SF13 36 543 6.1E-289 T 22-04-2016 PP4_RS20320 c08c5e3215c5353487a5297d8aa204ae 554 PANTHER PTHR11819 36 543 6.1E-289 T 22-04-2016 IPR001734 Sodium/solute symporter GO:0005215|GO:0006810|GO:0016020|GO:0055085 PP4_RS20905 1d4044a5f827354f08193d2a203882fc 249 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 1 232 1.9E-62 T 22-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 PP4_RS20905 1d4044a5f827354f08193d2a203882fc 249 PANTHER PTHR30457 1 249 5.7E-90 T 22-04-2016 PP4_RS20905 1d4044a5f827354f08193d2a203882fc 249 SUPERFAMILY SSF64167 1 247 8.37E-80 T 22-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 PP4_RS20905 1d4044a5f827354f08193d2a203882fc 249 Pfam PF01975 Survival protein SurE 3 181 2.2E-53 T 22-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 PP4_RS20905 1d4044a5f827354f08193d2a203882fc 249 Gene3D G3DSA:3.40.1210.10 1 245 2.8E-79 T 22-04-2016 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 PP4_RS20905 1d4044a5f827354f08193d2a203882fc 249 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 248 37.467 T 22-04-2016 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185 PP4_RS20930 357e767eae0e95f45067129d3d341704 298 Gene3D G3DSA:3.40.190.10 178 255 1.3E-23 T 22-04-2016 PP4_RS20930 357e767eae0e95f45067129d3d341704 298 PANTHER PTHR30537 1 290 2.6E-162 T 22-04-2016 PP4_RS20930 357e767eae0e95f45067129d3d341704 298 SUPERFAMILY SSF46785 7 89 2.73E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS20930 357e767eae0e95f45067129d3d341704 298 Gene3D G3DSA:1.10.10.10 9 88 4.4E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS20930 357e767eae0e95f45067129d3d341704 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 64 4.3E-20 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS20930 357e767eae0e95f45067129d3d341704 298 SUPERFAMILY SSF53850 90 293 2.9E-50 T 22-04-2016 PP4_RS20930 357e767eae0e95f45067129d3d341704 298 Pfam PF03466 LysR substrate binding domain 89 289 3.2E-50 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS20930 357e767eae0e95f45067129d3d341704 298 Gene3D G3DSA:3.40.190.10 93 177 3.1E-24 T 22-04-2016 PP4_RS20930 357e767eae0e95f45067129d3d341704 298 PANTHER PTHR30537:SF10 1 290 2.6E-162 T 22-04-2016 PP4_RS01090 4745785b49c0ef99972824c04932dbe3 1025 Gene3D G3DSA:3.30.420.40 703 723 9.1E-4 T 22-04-2016 PP4_RS01090 4745785b49c0ef99972824c04932dbe3 1025 Gene3D G3DSA:3.30.420.40 569 643 9.1E-4 T 22-04-2016 PP4_RS01090 4745785b49c0ef99972824c04932dbe3 1025 Gene3D G3DSA:3.30.420.40 760 799 9.1E-4 T 22-04-2016 PP4_RS01090 4745785b49c0ef99972824c04932dbe3 1025 SUPERFAMILY SSF53067 683 811 3.49E-6 T 22-04-2016 PP4_RS01090 4745785b49c0ef99972824c04932dbe3 1025 SUPERFAMILY SSF53067 567 633 3.49E-6 T 22-04-2016 PP4_RS01090 4745785b49c0ef99972824c04932dbe3 1025 PIRSF PIRSF034585 1 1025 0.0 T 22-04-2016 IPR009216 Virulence factor SrfB PP4_RS01090 4745785b49c0ef99972824c04932dbe3 1025 Pfam PF07520 Virulence factor SrfB 1 1022 0.0 T 22-04-2016 IPR009216 Virulence factor SrfB PP4_RS13965 100bfa45c76b84de4935373977be816e 430 Gene3D G3DSA:1.20.1250.20 222 410 2.2E-34 T 22-04-2016 PP4_RS13965 100bfa45c76b84de4935373977be816e 430 PIRSF PIRSF002808 2 426 4.1E-35 T 22-04-2016 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 PP4_RS13965 100bfa45c76b84de4935373977be816e 430 SUPERFAMILY SSF103473 6 411 5.89E-87 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS13965 100bfa45c76b84de4935373977be816e 430 Pfam PF07690 Major Facilitator Superfamily 18 375 1.9E-56 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS13965 100bfa45c76b84de4935373977be816e 430 Gene3D G3DSA:1.20.1250.20 10 204 5.5E-40 T 22-04-2016 PP4_RS13965 100bfa45c76b84de4935373977be816e 430 PANTHER PTHR11662:SF3 2 411 1.6E-134 T 22-04-2016 PP4_RS13965 100bfa45c76b84de4935373977be816e 430 PANTHER PTHR11662 2 411 1.6E-134 T 22-04-2016 PP4_RS01000 703b0e1ef18290a6762eacd20ac9ccf8 195 PANTHER PTHR30221:SF8 11 186 6.4E-56 T 22-04-2016 PP4_RS01000 703b0e1ef18290a6762eacd20ac9ccf8 195 Pfam PF00924 Mechanosensitive ion channel 61 180 1.5E-15 T 22-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 PP4_RS01000 703b0e1ef18290a6762eacd20ac9ccf8 195 Gene3D G3DSA:2.30.30.60 120 176 8.0E-11 T 22-04-2016 PP4_RS01000 703b0e1ef18290a6762eacd20ac9ccf8 195 PANTHER PTHR30221 11 186 6.4E-56 T 22-04-2016 PP4_RS01000 703b0e1ef18290a6762eacd20ac9ccf8 195 SUPERFAMILY SSF50182 105 178 4.25E-10 T 22-04-2016 IPR010920 LSM domain PP4_RS09390 536f46db910d1b82fc12ba39a4410935 386 SUPERFAMILY SSF47384 148 215 9.81E-11 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS09390 536f46db910d1b82fc12ba39a4410935 386 Pfam PF13426 PAS domain 28 130 1.1E-14 T 22-04-2016 IPR000014 PAS domain PP4_RS09390 536f46db910d1b82fc12ba39a4410935 386 PRINTS PR00344 Bacterial sensor protein C-terminal signature 306 320 2.1E-16 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS09390 536f46db910d1b82fc12ba39a4410935 386 PRINTS PR00344 Bacterial sensor protein C-terminal signature 337 355 2.1E-16 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS09390 536f46db910d1b82fc12ba39a4410935 386 PRINTS PR00344 Bacterial sensor protein C-terminal signature 361 374 2.1E-16 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS09390 536f46db910d1b82fc12ba39a4410935 386 PRINTS PR00344 Bacterial sensor protein C-terminal signature 324 334 2.1E-16 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS09390 536f46db910d1b82fc12ba39a4410935 386 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 260 375 9.2E-16 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS09390 536f46db910d1b82fc12ba39a4410935 386 SUPERFAMILY SSF55874 208 378 2.36E-37 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS09390 536f46db910d1b82fc12ba39a4410935 386 PANTHER PTHR24423 14 383 5.5E-122 T 22-04-2016 PP4_RS09390 536f46db910d1b82fc12ba39a4410935 386 SMART SM00086 89 131 0.0022 T 22-04-2016 IPR001610 PAC motif PP4_RS09390 536f46db910d1b82fc12ba39a4410935 386 SUPERFAMILY SSF55785 25 130 6.81E-25 T 22-04-2016 IPR000014 PAS domain PP4_RS09390 536f46db910d1b82fc12ba39a4410935 386 SMART SM00091 15 84 1.8E-5 T 22-04-2016 IPR000014 PAS domain PP4_RS09390 536f46db910d1b82fc12ba39a4410935 386 Gene3D G3DSA:1.10.287.130 148 214 1.1E-5 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS09390 536f46db910d1b82fc12ba39a4410935 386 SMART SM00388 153 218 2.2E-5 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS09390 536f46db910d1b82fc12ba39a4410935 386 Gene3D G3DSA:3.30.565.10 219 375 4.2E-35 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS09390 536f46db910d1b82fc12ba39a4410935 386 Gene3D G3DSA:3.30.450.20 15 129 1.6E-23 T 22-04-2016 PP4_RS09390 536f46db910d1b82fc12ba39a4410935 386 Pfam PF00512 His Kinase A (phospho-acceptor) domain 153 215 6.5E-7 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS09390 536f46db910d1b82fc12ba39a4410935 386 PANTHER PTHR24423:SF544 14 383 5.5E-122 T 22-04-2016 PP4_RS09390 536f46db910d1b82fc12ba39a4410935 386 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 15 137 1.7E-20 T 22-04-2016 IPR000014 PAS domain PP4_RS09390 536f46db910d1b82fc12ba39a4410935 386 SMART SM00387 259 377 7.4E-24 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS21210 a63b3c685a0d75c2ac98218b620f29b2 263 Pfam PF00691 OmpA family 145 240 3.0E-26 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS21210 a63b3c685a0d75c2ac98218b620f29b2 263 ProSitePatterns PS01068 OmpA-like domain. 178 222 - T 22-04-2016 IPR006690 Outer membrane protein, OmpA-like, conserved site GO:0009279|GO:0016021 PP4_RS21210 a63b3c685a0d75c2ac98218b620f29b2 263 Gene3D G3DSA:3.30.1330.60 134 246 9.3E-42 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS21210 a63b3c685a0d75c2ac98218b620f29b2 263 PRINTS PR01021 OMPA domain signature 146 168 3.0E-16 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PP4_RS21210 a63b3c685a0d75c2ac98218b620f29b2 263 PRINTS PR01021 OMPA domain signature 176 191 3.0E-16 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PP4_RS21210 a63b3c685a0d75c2ac98218b620f29b2 263 PRINTS PR01021 OMPA domain signature 191 207 3.0E-16 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PP4_RS21210 a63b3c685a0d75c2ac98218b620f29b2 263 Pfam PF14346 Domain of unknown function (DUF4398) 15 112 3.5E-11 T 22-04-2016 IPR025511 Domain of unknown function DUF4398 PP4_RS21210 a63b3c685a0d75c2ac98218b620f29b2 263 SUPERFAMILY SSF103088 134 246 9.42E-40 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS21210 a63b3c685a0d75c2ac98218b620f29b2 263 PANTHER PTHR30128 132 259 2.3E-49 T 22-04-2016 PP4_RS23055 68d62291fc9a5e2f438275521b990914 151 PANTHER PTHR23091 1 148 3.9E-34 T 22-04-2016 PP4_RS23055 68d62291fc9a5e2f438275521b990914 151 PANTHER PTHR23091:SF247 1 148 3.9E-34 T 22-04-2016 PP4_RS23055 68d62291fc9a5e2f438275521b990914 151 Pfam PF13673 Acetyltransferase (GNAT) domain 40 128 2.7E-14 T 22-04-2016 IPR000182 GNAT domain GO:0008080 PP4_RS23055 68d62291fc9a5e2f438275521b990914 151 SUPERFAMILY SSF55729 5 148 1.23E-34 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS23055 68d62291fc9a5e2f438275521b990914 151 TIGRFAM TIGR01575 rimI: ribosomal-protein-alanine acetyltransferase 14 144 3.1E-43 T 22-04-2016 IPR006464 Ribosomal-protein-alanine acetyltransferase GO:0006474|GO:0016407 PP4_RS23055 68d62291fc9a5e2f438275521b990914 151 Gene3D G3DSA:3.40.630.30 5 148 2.1E-34 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS26395 ae1e4d57bb91d171c4b12c0424761997 266 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 187 265 8.7E-25 T 22-04-2016 IPR006260 TonB, C-terminal GO:0006810 PP4_RS26395 ae1e4d57bb91d171c4b12c0424761997 266 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 189 265 2.2E-25 T 22-04-2016 IPR006260 TonB, C-terminal GO:0006810 PP4_RS26395 ae1e4d57bb91d171c4b12c0424761997 266 PANTHER PTHR33446:SF2 67 266 6.1E-21 T 22-04-2016 PP4_RS26395 ae1e4d57bb91d171c4b12c0424761997 266 Gene3D G3DSA:3.30.1150.10 160 266 1.9E-20 T 22-04-2016 PP4_RS26395 ae1e4d57bb91d171c4b12c0424761997 266 PRINTS PR01217 Proline rich extensin signature 144 161 6.0E-11 T 22-04-2016 PP4_RS26395 ae1e4d57bb91d171c4b12c0424761997 266 PRINTS PR01217 Proline rich extensin signature 127 143 6.0E-11 T 22-04-2016 PP4_RS26395 ae1e4d57bb91d171c4b12c0424761997 266 PRINTS PR01217 Proline rich extensin signature 73 85 6.0E-11 T 22-04-2016 PP4_RS26395 ae1e4d57bb91d171c4b12c0424761997 266 PRINTS PR01217 Proline rich extensin signature 97 118 6.0E-11 T 22-04-2016 PP4_RS26395 ae1e4d57bb91d171c4b12c0424761997 266 PANTHER PTHR33446 67 266 6.1E-21 T 22-04-2016 PP4_RS26395 ae1e4d57bb91d171c4b12c0424761997 266 SUPERFAMILY SSF74653 181 263 1.11E-23 T 22-04-2016 PP4_RS06175 125f11c0b3160fcaaa009242061a8583 377 SUPERFAMILY SSF53098 4 210 2.48E-64 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PP4_RS06175 125f11c0b3160fcaaa009242061a8583 377 SMART SM00341 211 291 1.1E-14 T 22-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 PP4_RS06175 125f11c0b3160fcaaa009242061a8583 377 TIGRFAM TIGR01388 rnd: ribonuclease D 7 371 2.2E-136 T 22-04-2016 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 PP4_RS06175 125f11c0b3160fcaaa009242061a8583 377 SMART SM00474 5 173 4.4E-41 T 22-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 PP4_RS06175 125f11c0b3160fcaaa009242061a8583 377 SUPERFAMILY SSF47819 195 301 1.31E-30 T 22-04-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 PP4_RS06175 125f11c0b3160fcaaa009242061a8583 377 Pfam PF01612 3'-5' exonuclease 5 172 1.7E-41 T 22-04-2016 IPR002562 3'-5' exonuclease domain GO:0003676|GO:0006139|GO:0008408 PP4_RS06175 125f11c0b3160fcaaa009242061a8583 377 Hamap MF_01899 Ribonuclease D [rnd]. 5 371 40.719 T 22-04-2016 IPR006292 Ribonuclease D GO:0008033|GO:0008408|GO:0033890 PP4_RS06175 125f11c0b3160fcaaa009242061a8583 377 PANTHER PTHR12124:SF42 3 295 1.2E-70 T 22-04-2016 PP4_RS06175 125f11c0b3160fcaaa009242061a8583 377 Gene3D G3DSA:3.30.420.10 4 183 1.3E-19 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PP4_RS06175 125f11c0b3160fcaaa009242061a8583 377 SUPERFAMILY SSF47819 296 371 3.92E-14 T 22-04-2016 IPR010997 HRDC-like GO:0000166|GO:0003824|GO:0044237 PP4_RS06175 125f11c0b3160fcaaa009242061a8583 377 PANTHER PTHR12124 3 295 1.2E-70 T 22-04-2016 PP4_RS06175 125f11c0b3160fcaaa009242061a8583 377 Pfam PF00570 HRDC domain 214 281 5.4E-19 T 22-04-2016 IPR002121 HRDC domain GO:0003676|GO:0005622 PP4_RS17225 3ae310d7ba68acf1459093f478c46039 230 Pfam PF03591 AzlC protein 18 156 1.5E-37 T 22-04-2016 IPR011606 Branched-chain amino acid transport, permease PP4_RS17225 3ae310d7ba68acf1459093f478c46039 230 PANTHER PTHR34979 1 221 2.6E-52 T 22-04-2016 PP4_RS20175 c75500487aad555951c4f62de4a2d6f5 921 Gene3D G3DSA:3.30.1360.40 236 334 3.9E-39 T 22-04-2016 IPR024946 Arginine repressor C-terminal-like domain PP4_RS20175 c75500487aad555951c4f62de4a2d6f5 921 SUPERFAMILY SSF56719 30 522 9.55E-186 T 22-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 PP4_RS20175 c75500487aad555951c4f62de4a2d6f5 921 PANTHER PTHR10169 686 853 0.0 T 22-04-2016 PP4_RS20175 c75500487aad555951c4f62de4a2d6f5 921 PANTHER PTHR10169 451 642 0.0 T 22-04-2016 PP4_RS20175 c75500487aad555951c4f62de4a2d6f5 921 PANTHER PTHR10169 3 418 0.0 T 22-04-2016 PP4_RS20175 c75500487aad555951c4f62de4a2d6f5 921 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 737 781 8.5E-14 T 22-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 PP4_RS20175 c75500487aad555951c4f62de4a2d6f5 921 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 541 586 1.4E-8 T 22-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 PP4_RS20175 c75500487aad555951c4f62de4a2d6f5 921 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 837 883 7.1E-12 T 22-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 PP4_RS20175 c75500487aad555951c4f62de4a2d6f5 921 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 591 638 1.0E-8 T 22-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 PP4_RS20175 c75500487aad555951c4f62de4a2d6f5 921 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 689 732 2.7E-8 T 22-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 PP4_RS20175 c75500487aad555951c4f62de4a2d6f5 921 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 788 833 1.7E-12 T 22-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 PP4_RS20175 c75500487aad555951c4f62de4a2d6f5 921 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 8 639 8.1E-296 T 22-04-2016 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PP4_RS20175 c75500487aad555951c4f62de4a2d6f5 921 Gene3D G3DSA:1.10.268.10 364 497 3.8E-47 T 22-04-2016 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS20175 c75500487aad555951c4f62de4a2d6f5 921 Gene3D G3DSA:3.90.199.10 34 216 4.8E-85 T 22-04-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 PP4_RS20175 c75500487aad555951c4f62de4a2d6f5 921 SUPERFAMILY SSF101904 683 898 7.19E-100 T 22-04-2016 PP4_RS20175 c75500487aad555951c4f62de4a2d6f5 921 SUPERFAMILY SSF101904 534 639 7.19E-100 T 22-04-2016 PP4_RS20175 c75500487aad555951c4f62de4a2d6f5 921 Gene3D G3DSA:2.120.10.90 533 652 9.5E-130 T 22-04-2016 PP4_RS20175 c75500487aad555951c4f62de4a2d6f5 921 Gene3D G3DSA:2.120.10.90 689 883 9.5E-130 T 22-04-2016 PP4_RS20175 c75500487aad555951c4f62de4a2d6f5 921 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 32 507 6.1E-154 T 22-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS20175 c75500487aad555951c4f62de4a2d6f5 921 PANTHER PTHR10169:SF48 686 853 0.0 T 22-04-2016 PP4_RS20175 c75500487aad555951c4f62de4a2d6f5 921 PANTHER PTHR10169:SF48 451 642 0.0 T 22-04-2016 PP4_RS20175 c75500487aad555951c4f62de4a2d6f5 921 PANTHER PTHR10169:SF48 3 418 0.0 T 22-04-2016 PP4_RS20175 c75500487aad555951c4f62de4a2d6f5 921 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 3 889 29.631 T 22-04-2016 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PP4_RS20175 c75500487aad555951c4f62de4a2d6f5 921 SMART SM00434 11 500 8.3E-298 T 22-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS27150 eecc48f82c97aef2c825f3120be3c6bf 332 Gene3D G3DSA:3.40.190.10 267 318 5.4E-10 T 22-04-2016 PP4_RS27150 eecc48f82c97aef2c825f3120be3c6bf 332 Gene3D G3DSA:3.40.190.10 42 120 5.4E-10 T 22-04-2016 PP4_RS27150 eecc48f82c97aef2c825f3120be3c6bf 332 TIGRFAM TIGR02136 ptsS_2: phosphate binding protein 3 309 7.6E-101 T 22-04-2016 IPR011862 Phosphate binding protein GO:0006810 PP4_RS27150 eecc48f82c97aef2c825f3120be3c6bf 332 PANTHER PTHR30570 17 321 1.6E-158 T 22-04-2016 PP4_RS27150 eecc48f82c97aef2c825f3120be3c6bf 332 PANTHER PTHR30570:SF5 17 321 1.6E-158 T 22-04-2016 PP4_RS27150 eecc48f82c97aef2c825f3120be3c6bf 332 Gene3D G3DSA:3.40.190.10 123 266 4.1E-37 T 22-04-2016 PP4_RS27150 eecc48f82c97aef2c825f3120be3c6bf 332 Pfam PF12849 PBP superfamily domain 37 294 1.8E-34 T 22-04-2016 IPR024370 PBP domain PP4_RS27150 eecc48f82c97aef2c825f3120be3c6bf 332 SUPERFAMILY SSF53850 36 321 5.04E-72 T 22-04-2016 PP4_RS10295 c4ed868117dce70caee70ca7bcdd4a10 116 SMART SM00448 1 109 2.2E-14 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS10295 c4ed868117dce70caee70ca7bcdd4a10 116 SUPERFAMILY SSF52172 1 114 1.01E-23 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS10295 c4ed868117dce70caee70ca7bcdd4a10 116 Gene3D G3DSA:3.40.50.2300 1 113 4.5E-25 T 22-04-2016 PP4_RS10295 c4ed868117dce70caee70ca7bcdd4a10 116 Pfam PF00072 Response regulator receiver domain 4 109 5.1E-14 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS10295 c4ed868117dce70caee70ca7bcdd4a10 116 PANTHER PTHR24423:SF438 1 113 1.5E-25 T 22-04-2016 PP4_RS10295 c4ed868117dce70caee70ca7bcdd4a10 116 PANTHER PTHR24423 1 113 1.5E-25 T 22-04-2016 PP4_RS18055 1aa941cdd5f9fd750633b4d1ecba88ee 316 SUPERFAMILY SSF103481 200 291 2.75E-9 T 22-04-2016 PP4_RS18055 1aa941cdd5f9fd750633b4d1ecba88ee 316 SUPERFAMILY SSF103481 52 151 2.09E-12 T 22-04-2016 PP4_RS18055 1aa941cdd5f9fd750633b4d1ecba88ee 316 PANTHER PTHR12715 15 303 1.2E-37 T 22-04-2016 PP4_RS18055 1aa941cdd5f9fd750633b4d1ecba88ee 316 Pfam PF00892 EamA-like transporter family 160 289 6.4E-12 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS18055 1aa941cdd5f9fd750633b4d1ecba88ee 316 Pfam PF00892 EamA-like transporter family 19 147 1.7E-12 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS02330 1eb4a38fbc4da8026e0951b1676bce0d 112 SUPERFAMILY SSF54197 2 111 2.63E-39 T 22-04-2016 IPR011146 HIT-like domain GO:0003824 PP4_RS02330 1eb4a38fbc4da8026e0951b1676bce0d 112 PRINTS PR00332 Histidine triad family signature 92 102 1.0E-19 T 22-04-2016 IPR001310 Histidine triad (HIT) protein PP4_RS02330 1eb4a38fbc4da8026e0951b1676bce0d 112 PRINTS PR00332 Histidine triad family signature 25 43 1.0E-19 T 22-04-2016 IPR001310 Histidine triad (HIT) protein PP4_RS02330 1eb4a38fbc4da8026e0951b1676bce0d 112 PRINTS PR00332 Histidine triad family signature 4 20 1.0E-19 T 22-04-2016 IPR001310 Histidine triad (HIT) protein PP4_RS02330 1eb4a38fbc4da8026e0951b1676bce0d 112 PANTHER PTHR23089:SF2 4 112 1.8E-53 T 22-04-2016 PP4_RS02330 1eb4a38fbc4da8026e0951b1676bce0d 112 Pfam PF01230 HIT domain 11 106 1.1E-28 T 22-04-2016 IPR001310 Histidine triad (HIT) protein PP4_RS02330 1eb4a38fbc4da8026e0951b1676bce0d 112 ProSitePatterns PS00892 HIT domain signature. 85 103 - T 22-04-2016 IPR019808 Histidine triad, conserved site PP4_RS02330 1eb4a38fbc4da8026e0951b1676bce0d 112 Gene3D G3DSA:3.30.428.10 4 112 6.2E-43 T 22-04-2016 IPR011146 HIT-like domain GO:0003824 PP4_RS02330 1eb4a38fbc4da8026e0951b1676bce0d 112 PANTHER PTHR23089 4 112 1.8E-53 T 22-04-2016 IPR001310 Histidine triad (HIT) protein PP4_RS05580 01c8039613f08f5c59a9a3ef54ebacdf 363 PANTHER PTHR15032:SF4 69 345 9.0E-108 T 22-04-2016 PP4_RS05580 01c8039613f08f5c59a9a3ef54ebacdf 363 PANTHER PTHR15032 69 345 9.0E-108 T 22-04-2016 PP4_RS05580 01c8039613f08f5c59a9a3ef54ebacdf 363 SUPERFAMILY SSF56281 186 333 5.15E-36 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS05580 01c8039613f08f5c59a9a3ef54ebacdf 363 SUPERFAMILY SSF56281 84 159 5.15E-36 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS05580 01c8039613f08f5c59a9a3ef54ebacdf 363 Gene3D G3DSA:3.60.15.10 52 347 2.5E-96 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS05580 01c8039613f08f5c59a9a3ef54ebacdf 363 Pfam PF12706 Beta-lactamase superfamily domain 101 294 1.3E-43 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS25095 8924fe16adb88995701784fe3e3a4390 752 SUPERFAMILY SSF56719 35 487 2.35E-154 T 22-04-2016 IPR013760 DNA topoisomerase, type IIA-like domain GO:0003918|GO:0005524 PP4_RS25095 8924fe16adb88995701784fe3e3a4390 752 TIGRFAM TIGR01062 parC_Gneg: DNA topoisomerase IV, A subunit 12 744 0.0 T 22-04-2016 PP4_RS25095 8924fe16adb88995701784fe3e3a4390 752 SUPERFAMILY SSF101904 501 745 1.44E-50 T 22-04-2016 PP4_RS25095 8924fe16adb88995701784fe3e3a4390 752 PANTHER PTHR10169 1 527 0.0 T 22-04-2016 PP4_RS25095 8924fe16adb88995701784fe3e3a4390 752 SMART SM00434 15 465 1.8E-229 T 22-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS25095 8924fe16adb88995701784fe3e3a4390 752 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 36 471 6.4E-133 T 22-04-2016 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 PP4_RS25095 8924fe16adb88995701784fe3e3a4390 752 Gene3D G3DSA:3.90.199.10 337 401 4.4E-105 T 22-04-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 PP4_RS25095 8924fe16adb88995701784fe3e3a4390 752 Gene3D G3DSA:3.90.199.10 34 241 4.4E-105 T 22-04-2016 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 PP4_RS25095 8924fe16adb88995701784fe3e3a4390 752 PANTHER PTHR10169:SF30 1 527 0.0 T 22-04-2016 PP4_RS25095 8924fe16adb88995701784fe3e3a4390 752 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 649 700 8.5E-6 T 22-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 PP4_RS25095 8924fe16adb88995701784fe3e3a4390 752 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 602 642 0.019 T 22-04-2016 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 PP4_RS25095 8924fe16adb88995701784fe3e3a4390 752 Hamap MF_00936 DNA topoisomerase 4 subunit A [parC]. 8 747 33.813 T 22-04-2016 IPR005742 DNA topoisomerase IV, subunit A, Gram-negative GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 PP4_RS25095 8924fe16adb88995701784fe3e3a4390 752 Gene3D G3DSA:3.30.1360.40 242 335 3.3E-25 T 22-04-2016 IPR024946 Arginine repressor C-terminal-like domain PP4_RS25095 8924fe16adb88995701784fe3e3a4390 752 Gene3D G3DSA:2.120.10.90 500 740 2.6E-23 T 22-04-2016 PP4_RS21680 7ef41fe318a9f8d6c123a7adc4359eb4 320 PANTHER PTHR30514:SF0 1 320 7.1E-76 T 22-04-2016 PP4_RS21680 7ef41fe318a9f8d6c123a7adc4359eb4 320 Gene3D G3DSA:3.30.420.40 8 71 4.1E-4 T 22-04-2016 PP4_RS21680 7ef41fe318a9f8d6c123a7adc4359eb4 320 TIGRFAM TIGR00749 glk: glucokinase 5 310 3.2E-78 T 22-04-2016 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 PP4_RS21680 7ef41fe318a9f8d6c123a7adc4359eb4 320 Pfam PF02685 Glucokinase 5 315 2.1E-107 T 22-04-2016 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 PP4_RS21680 7ef41fe318a9f8d6c123a7adc4359eb4 320 Gene3D G3DSA:3.40.367.20 101 299 1.4E-67 T 22-04-2016 PP4_RS21680 7ef41fe318a9f8d6c123a7adc4359eb4 320 PANTHER PTHR30514 1 320 7.1E-76 T 22-04-2016 PP4_RS21680 7ef41fe318a9f8d6c123a7adc4359eb4 320 SUPERFAMILY SSF53067 4 317 2.11E-58 T 22-04-2016 PP4_RS13375 e3e7f6caed6db3f08bc4b2e7e8183a8c 402 SUPERFAMILY SSF53383 6 400 4.44E-113 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS13375 e3e7f6caed6db3f08bc4b2e7e8183a8c 402 Gene3D G3DSA:3.90.1150.10 277 400 1.1E-43 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS13375 e3e7f6caed6db3f08bc4b2e7e8183a8c 402 PANTHER PTHR11751 16 400 1.7E-153 T 22-04-2016 PP4_RS13375 e3e7f6caed6db3f08bc4b2e7e8183a8c 402 Gene3D G3DSA:3.40.640.10 47 276 1.3E-71 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS13375 e3e7f6caed6db3f08bc4b2e7e8183a8c 402 Pfam PF00155 Aminotransferase class I and II 34 394 1.2E-75 T 22-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PP4_RS13375 e3e7f6caed6db3f08bc4b2e7e8183a8c 402 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 201 224 3.3E-11 T 22-04-2016 PP4_RS13375 e3e7f6caed6db3f08bc4b2e7e8183a8c 402 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 117 138 3.3E-11 T 22-04-2016 PP4_RS13375 e3e7f6caed6db3f08bc4b2e7e8183a8c 402 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 232 256 3.3E-11 T 22-04-2016 PP4_RS13375 e3e7f6caed6db3f08bc4b2e7e8183a8c 402 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 164 188 3.3E-11 T 22-04-2016 PP4_RS13375 e3e7f6caed6db3f08bc4b2e7e8183a8c 402 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 238 251 - T 22-04-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 PP4_RS13375 e3e7f6caed6db3f08bc4b2e7e8183a8c 402 PANTHER PTHR11751:SF306 16 400 1.7E-153 T 22-04-2016 PP4_RS18260 64d8feb9640165a830331d4c0d1a959b 205 SUPERFAMILY SSF47240 5 200 2.14E-76 T 22-04-2016 IPR009078 Ferritin-like superfamily PP4_RS18260 64d8feb9640165a830331d4c0d1a959b 205 PANTHER PTHR42637 1 205 4.1E-74 T 22-04-2016 PP4_RS18260 64d8feb9640165a830331d4c0d1a959b 205 PANTHER PTHR42637:SF1 1 205 4.1E-74 T 22-04-2016 PP4_RS18260 64d8feb9640165a830331d4c0d1a959b 205 PIRSF PIRSF020736 1 202 1.4E-89 T 22-04-2016 IPR010386 tRNA-hydroxylase MiaE KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.-|UniPathway: UPA00729 PP4_RS18260 64d8feb9640165a830331d4c0d1a959b 205 Pfam PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) 55 197 3.4E-61 T 22-04-2016 IPR010386 tRNA-hydroxylase MiaE KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.-|UniPathway: UPA00729 PP4_RS18260 64d8feb9640165a830331d4c0d1a959b 205 Pfam PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) 3 53 1.5E-15 T 22-04-2016 IPR010386 tRNA-hydroxylase MiaE KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.-|UniPathway: UPA00729 PP4_RS18260 64d8feb9640165a830331d4c0d1a959b 205 Gene3D G3DSA:1.20.1260.10 3 201 1.4E-85 T 22-04-2016 IPR012347 Ferritin-related PP4_RS26620 b2f7713cc9ac9af3c9bec93488c9970e 216 Pfam PF04752 ChaC-like protein 44 204 5.4E-37 T 22-04-2016 IPR006840 ChaC-like protein PP4_RS26620 b2f7713cc9ac9af3c9bec93488c9970e 216 Gene3D G3DSA:3.10.490.10 38 204 1.4E-26 T 22-04-2016 IPR013024 Butirosin biosynthesis, BtrG-like PP4_RS26620 b2f7713cc9ac9af3c9bec93488c9970e 216 PANTHER PTHR12192:SF9 34 204 6.2E-43 T 22-04-2016 PP4_RS26620 b2f7713cc9ac9af3c9bec93488c9970e 216 PANTHER PTHR12192 34 204 6.2E-43 T 22-04-2016 IPR006840 ChaC-like protein PP4_RS26620 b2f7713cc9ac9af3c9bec93488c9970e 216 SUPERFAMILY SSF110857 44 156 7.98E-11 T 22-04-2016 IPR013024 Butirosin biosynthesis, BtrG-like PP4_RS25800 1b932488af419d9f01402f3088e4fd92 137 Pfam PF00581 Rhodanese-like domain 41 131 3.0E-14 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS25800 1b932488af419d9f01402f3088e4fd92 137 Gene3D G3DSA:3.40.250.10 38 136 9.2E-26 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS25800 1b932488af419d9f01402f3088e4fd92 137 PANTHER PTHR12231 13 137 3.2E-27 T 22-04-2016 PP4_RS25800 1b932488af419d9f01402f3088e4fd92 137 SUPERFAMILY SSF52821 14 137 4.45E-31 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS25800 1b932488af419d9f01402f3088e4fd92 137 PANTHER PTHR12231:SF138 13 137 3.2E-27 T 22-04-2016 PP4_RS25800 1b932488af419d9f01402f3088e4fd92 137 SMART SM00450 38 134 1.4E-15 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS16700 d4b09ff42530daf76d178b04390ba4fb 524 Gene3D G3DSA:3.10.105.10 300 482 2.7E-36 T 22-04-2016 PP4_RS16700 d4b09ff42530daf76d178b04390ba4fb 524 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 98 413 1.5E-63 T 22-04-2016 IPR000914 Solute-binding protein family 5 domain PP4_RS16700 d4b09ff42530daf76d178b04390ba4fb 524 SUPERFAMILY SSF53850 47 521 2.0E-95 T 22-04-2016 PP4_RS16700 d4b09ff42530daf76d178b04390ba4fb 524 Gene3D G3DSA:3.40.190.10 171 299 2.9E-31 T 22-04-2016 PP4_RS16700 d4b09ff42530daf76d178b04390ba4fb 524 PANTHER PTHR30290 21 522 5.5E-77 T 22-04-2016 PP4_RS16700 d4b09ff42530daf76d178b04390ba4fb 524 Gene3D G3DSA:3.90.76.10 88 170 1.5E-15 T 22-04-2016 PP4_RS22280 04d23cd9aedb690e90a2bdd15725ae5e 381 PANTHER PTHR30544 1 361 7.4E-181 T 22-04-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PP4_RS22280 04d23cd9aedb690e90a2bdd15725ae5e 381 Gene3D G3DSA:3.20.20.70 107 323 1.5E-13 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS22280 04d23cd9aedb690e90a2bdd15725ae5e 381 SUPERFAMILY SSF102114 107 318 1.83E-13 T 22-04-2016 PP4_RS22280 04d23cd9aedb690e90a2bdd15725ae5e 381 PANTHER PTHR30544:SF5 1 361 7.4E-181 T 22-04-2016 PP4_RS22280 04d23cd9aedb690e90a2bdd15725ae5e 381 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 7 354 72.663 T 22-04-2016 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PP4_RS22280 04d23cd9aedb690e90a2bdd15725ae5e 381 PIRSF PIRSF006004 3 367 5.1E-151 T 22-04-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PP4_RS22280 04d23cd9aedb690e90a2bdd15725ae5e 381 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 3 358 2.0E-145 T 22-04-2016 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PP4_RS22280 04d23cd9aedb690e90a2bdd15725ae5e 381 Pfam PF04055 Radical SAM superfamily 111 283 1.2E-16 T 22-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 PP4_RS05245 489bbb4b8079bd7448308d58f0a98fa3 405 PANTHER PTHR11587:SF2 1 403 1.2E-232 T 22-04-2016 PP4_RS05245 489bbb4b8079bd7448308d58f0a98fa3 405 SUPERFAMILY SSF69864 175 401 1.83E-91 T 22-04-2016 PP4_RS05245 489bbb4b8079bd7448308d58f0a98fa3 405 Gene3D G3DSA:1.20.5.470 369 395 3.6E-6 T 22-04-2016 PP4_RS05245 489bbb4b8079bd7448308d58f0a98fa3 405 TIGRFAM TIGR00032 argG: argininosuccinate synthase 6 399 1.6E-140 T 22-04-2016 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PP4_RS05245 489bbb4b8079bd7448308d58f0a98fa3 405 Gene3D G3DSA:3.90.1260.10 160 359 2.4E-94 T 22-04-2016 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PP4_RS05245 489bbb4b8079bd7448308d58f0a98fa3 405 SUPERFAMILY SSF52402 5 208 1.94E-51 T 22-04-2016 PP4_RS05245 489bbb4b8079bd7448308d58f0a98fa3 405 ProSitePatterns PS00565 Argininosuccinate synthase signature 2. 118 129 - T 22-04-2016 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PP4_RS05245 489bbb4b8079bd7448308d58f0a98fa3 405 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 10 18 - T 22-04-2016 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PP4_RS05245 489bbb4b8079bd7448308d58f0a98fa3 405 PANTHER PTHR11587 1 403 1.2E-232 T 22-04-2016 PP4_RS05245 489bbb4b8079bd7448308d58f0a98fa3 405 Gene3D G3DSA:3.40.50.620 5 159 4.6E-68 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS05245 489bbb4b8079bd7448308d58f0a98fa3 405 Pfam PF00764 Arginosuccinate synthase 8 397 9.7E-153 T 22-04-2016 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PP4_RS05245 489bbb4b8079bd7448308d58f0a98fa3 405 Hamap MF_00005 Argininosuccinate synthase [argG]. 4 402 52.163 T 22-04-2016 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|UniPathway: UPA00068 PP4_RS22755 213a41ae466f9852816c3591e8d2f2ee 206 SUPERFAMILY SSF143081 2 201 6.28E-49 T 22-04-2016 IPR003738 SOS response associated peptidase (SRAP) KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PP4_RS22755 213a41ae466f9852816c3591e8d2f2ee 206 PANTHER PTHR13604 2 205 6.2E-43 T 22-04-2016 IPR003738 SOS response associated peptidase (SRAP) KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PP4_RS22755 213a41ae466f9852816c3591e8d2f2ee 206 Pfam PF02586 SOS response associated peptidase (SRAP) 1 192 2.5E-39 T 22-04-2016 IPR003738 SOS response associated peptidase (SRAP) KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PP4_RS22755 213a41ae466f9852816c3591e8d2f2ee 206 Gene3D G3DSA:3.90.1680.10 1 205 3.1E-45 T 22-04-2016 IPR003738 SOS response associated peptidase (SRAP) KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PP4_RS21560 f00040e12fb14f87a114d6f801238be7 159 Gene3D G3DSA:3.40.140.10 6 154 5.6E-55 T 22-04-2016 PP4_RS21560 f00040e12fb14f87a114d6f801238be7 159 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 15 156 43.004 T 22-04-2016 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 PP4_RS21560 f00040e12fb14f87a114d6f801238be7 159 SUPERFAMILY SSF53927 9 156 1.1E-52 T 22-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 PP4_RS21560 f00040e12fb14f87a114d6f801238be7 159 PANTHER PTHR11079:SF72 7 158 1.4E-43 T 22-04-2016 PP4_RS21560 f00040e12fb14f87a114d6f801238be7 159 Pfam PF14437 MafB19-like deaminase 11 156 1.4E-30 T 22-04-2016 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 PP4_RS21560 f00040e12fb14f87a114d6f801238be7 159 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 60 97 - T 22-04-2016 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 PP4_RS21560 f00040e12fb14f87a114d6f801238be7 159 PANTHER PTHR11079 7 158 1.4E-43 T 22-04-2016 PP4_RS07380 42b88b92d99d3f28c11d8807c47b1769 151 Hamap MF_01959 Cytochrome c-type biogenesis protein CcmE [ccmE]. 2 141 33.676 T 22-04-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 PP4_RS07380 42b88b92d99d3f28c11d8807c47b1769 151 Gene3D G3DSA:2.40.50.140 27 125 5.5E-39 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS07380 42b88b92d99d3f28c11d8807c47b1769 151 PANTHER PTHR34128:SF1 2 142 3.1E-65 T 22-04-2016 PP4_RS07380 42b88b92d99d3f28c11d8807c47b1769 151 Pfam PF03100 CcmE 5 131 1.6E-46 T 22-04-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 PP4_RS07380 42b88b92d99d3f28c11d8807c47b1769 151 SUPERFAMILY SSF82093 30 137 1.96E-41 T 22-04-2016 IPR004329 CcmE/CycJ protein GO:0005886|GO:0017003|GO:0017004 PP4_RS07380 42b88b92d99d3f28c11d8807c47b1769 151 PANTHER PTHR34128 2 142 3.1E-65 T 22-04-2016 PP4_RS04000 9e49bb78c361e945b2536bf3d5bd150e 301 Gene3D G3DSA:3.40.190.10 272 296 3.5E-21 T 22-04-2016 PP4_RS04000 9e49bb78c361e945b2536bf3d5bd150e 301 Gene3D G3DSA:3.40.190.10 92 170 3.5E-21 T 22-04-2016 PP4_RS04000 9e49bb78c361e945b2536bf3d5bd150e 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 1.5E-14 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS04000 9e49bb78c361e945b2536bf3d5bd150e 301 PANTHER PTHR30118 1 294 3.0E-118 T 22-04-2016 PP4_RS04000 9e49bb78c361e945b2536bf3d5bd150e 301 Gene3D G3DSA:3.40.190.10 171 267 1.3E-24 T 22-04-2016 PP4_RS04000 9e49bb78c361e945b2536bf3d5bd150e 301 SUPERFAMILY SSF46785 2 83 3.74E-16 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS04000 9e49bb78c361e945b2536bf3d5bd150e 301 SUPERFAMILY SSF53850 93 295 2.71E-32 T 22-04-2016 PP4_RS04000 9e49bb78c361e945b2536bf3d5bd150e 301 PANTHER PTHR30118:SF5 1 294 3.0E-118 T 22-04-2016 PP4_RS04000 9e49bb78c361e945b2536bf3d5bd150e 301 Pfam PF03466 LysR substrate binding domain 107 294 9.3E-16 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS04000 9e49bb78c361e945b2536bf3d5bd150e 301 Gene3D G3DSA:1.10.10.10 2 83 1.0E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS20965 cdc9abc5be75003875d4c17e8b71c18b 315 Pfam PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit 5 148 7.9E-63 T 22-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PP4_RS20965 cdc9abc5be75003875d4c17e8b71c18b 315 PANTHER PTHR22855 1 314 7.3E-130 T 22-04-2016 PP4_RS20965 cdc9abc5be75003875d4c17e8b71c18b 315 TIGRFAM TIGR00513 accA: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit 2 314 6.7E-154 T 22-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PP4_RS20965 cdc9abc5be75003875d4c17e8b71c18b 315 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 88 99 2.0E-45 T 22-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PP4_RS20965 cdc9abc5be75003875d4c17e8b71c18b 315 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 197 206 2.0E-45 T 22-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PP4_RS20965 cdc9abc5be75003875d4c17e8b71c18b 315 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 134 150 2.0E-45 T 22-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PP4_RS20965 cdc9abc5be75003875d4c17e8b71c18b 315 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 113 131 2.0E-45 T 22-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PP4_RS20965 cdc9abc5be75003875d4c17e8b71c18b 315 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 153 166 2.0E-45 T 22-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PP4_RS20965 cdc9abc5be75003875d4c17e8b71c18b 315 PRINTS PR01069 Acetyl-CoA carboxylase carboxyl transferase alpha subunit signature 169 182 2.0E-45 T 22-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PP4_RS20965 cdc9abc5be75003875d4c17e8b71c18b 315 PANTHER PTHR22855:SF42 1 314 7.3E-130 T 22-04-2016 PP4_RS20965 cdc9abc5be75003875d4c17e8b71c18b 315 Gene3D G3DSA:3.90.226.10 60 271 4.9E-47 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS20965 cdc9abc5be75003875d4c17e8b71c18b 315 SUPERFAMILY SSF52096 5 314 6.51E-100 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS20965 cdc9abc5be75003875d4c17e8b71c18b 315 Hamap MF_00823 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha [accA]. 5 315 48.571 T 22-04-2016 IPR001095 Acetyl-CoA carboxylase, alpha subunit GO:0003989|GO:0006633|GO:0009317 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PP4_RS21140 df05550233fde7367f7befb8be4c5ba4 1021 PANTHER PTHR32063:SF18 3 1021 0.0 T 22-04-2016 PP4_RS21140 df05550233fde7367f7befb8be4c5ba4 1021 SUPERFAMILY SSF82693 270 325 1.2E-15 T 22-04-2016 PP4_RS21140 df05550233fde7367f7befb8be4c5ba4 1021 Pfam PF00873 AcrB/AcrD/AcrF family 7 1013 1.7E-171 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS21140 df05550233fde7367f7befb8be4c5ba4 1021 Gene3D G3DSA:1.10.3850.10 276 489 1.7E-41 T 22-04-2016 PP4_RS21140 df05550233fde7367f7befb8be4c5ba4 1021 Gene3D G3DSA:1.10.3850.10 804 1017 6.5E-53 T 22-04-2016 PP4_RS21140 df05550233fde7367f7befb8be4c5ba4 1021 SUPERFAMILY SSF82693 564 639 6.54E-6 T 22-04-2016 PP4_RS21140 df05550233fde7367f7befb8be4c5ba4 1021 SUPERFAMILY SSF82866 796 1019 6.28E-47 T 22-04-2016 PP4_RS21140 df05550233fde7367f7befb8be4c5ba4 1021 SUPERFAMILY SSF82714 714 800 2.35E-15 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS21140 df05550233fde7367f7befb8be4c5ba4 1021 SUPERFAMILY SSF82866 304 487 4.84E-36 T 22-04-2016 PP4_RS21140 df05550233fde7367f7befb8be4c5ba4 1021 SUPERFAMILY SSF82714 187 267 2.35E-12 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS21140 df05550233fde7367f7befb8be4c5ba4 1021 SUPERFAMILY SSF82693 42 136 1.53E-18 T 22-04-2016 PP4_RS21140 df05550233fde7367f7befb8be4c5ba4 1021 PRINTS PR00702 Acriflavin resistance protein family signature 386 410 2.54E-23 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS21140 df05550233fde7367f7befb8be4c5ba4 1021 PRINTS PR00702 Acriflavin resistance protein family signature 547 564 2.54E-23 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS21140 df05550233fde7367f7befb8be4c5ba4 1021 PRINTS PR00702 Acriflavin resistance protein family signature 464 487 2.54E-23 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS21140 df05550233fde7367f7befb8be4c5ba4 1021 PRINTS PR00702 Acriflavin resistance protein family signature 439 462 2.54E-23 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS21140 df05550233fde7367f7befb8be4c5ba4 1021 PRINTS PR00702 Acriflavin resistance protein family signature 40 58 2.54E-23 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS21140 df05550233fde7367f7befb8be4c5ba4 1021 PRINTS PR00702 Acriflavin resistance protein family signature 358 379 2.54E-23 T 22-04-2016 IPR001036 Acriflavin resistance protein GO:0005215|GO:0006810|GO:0016020 PP4_RS21140 df05550233fde7367f7befb8be4c5ba4 1021 Gene3D G3DSA:3.30.70.1430 42 138 1.4E-19 T 22-04-2016 PP4_RS21140 df05550233fde7367f7befb8be4c5ba4 1021 PANTHER PTHR32063 3 1021 0.0 T 22-04-2016 PP4_RS21140 df05550233fde7367f7befb8be4c5ba4 1021 SUPERFAMILY SSF82693 141 184 1.2E-15 T 22-04-2016 PP4_RS21140 df05550233fde7367f7befb8be4c5ba4 1021 Gene3D G3DSA:3.30.2090.10 188 267 3.4E-13 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS21140 df05550233fde7367f7befb8be4c5ba4 1021 Gene3D G3DSA:3.30.2090.10 713 800 1.1E-14 T 22-04-2016 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains PP4_RS21140 df05550233fde7367f7befb8be4c5ba4 1021 Gene3D G3DSA:3.30.70.1430 565 639 1.2E-5 T 22-04-2016 PP4_RS17905 83157ed00195e2762e92702eae5e8621 220 SUPERFAMILY SSF52833 5 211 1.54E-30 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS17905 83157ed00195e2762e92702eae5e8621 220 Gene3D G3DSA:3.40.30.10 5 208 6.3E-31 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS17905 83157ed00195e2762e92702eae5e8621 220 Pfam PF01323 DSBA-like thioredoxin domain 7 208 4.3E-25 T 22-04-2016 IPR001853 DSBA-like thioredoxin domain GO:0015035 PP4_RS17905 83157ed00195e2762e92702eae5e8621 220 PANTHER PTHR13887 2 208 2.6E-38 T 22-04-2016 PP4_RS17905 83157ed00195e2762e92702eae5e8621 220 PANTHER PTHR13887:SF10 2 208 2.6E-38 T 22-04-2016 PP4_RS21685 94f7b5edf82f4df4b5b636d56549dd6f 608 SUPERFAMILY SSF52016 419 600 2.35E-57 T 22-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel PP4_RS21685 94f7b5edf82f4df4b5b636d56549dd6f 608 PANTHER PTHR21000 1 597 0.0 T 22-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PP4_RS21685 94f7b5edf82f4df4b5b636d56549dd6f 608 ProSitePatterns PS00887 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 2. 505 516 - T 22-04-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PP4_RS21685 94f7b5edf82f4df4b5b636d56549dd6f 608 ProSitePatterns PS00886 Dihydroxy-acid and 6-phosphogluconate dehydratases signature 1. 154 164 - T 22-04-2016 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PP4_RS21685 94f7b5edf82f4df4b5b636d56549dd6f 608 PANTHER PTHR21000:SF9 1 597 0.0 T 22-04-2016 PP4_RS21685 94f7b5edf82f4df4b5b636d56549dd6f 608 Pfam PF00920 Dehydratase family 67 597 9.5E-163 T 22-04-2016 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase GO:0003824|GO:0008152 KEGG: 00290+4.2.1.9|KEGG: 00770+4.2.1.9|MetaCyc: PWY-5101|MetaCyc: PWY-5103|MetaCyc: PWY-5104|MetaCyc: PWY-7111|UniPathway: UPA00047|UniPathway: UPA00049 PP4_RS21685 94f7b5edf82f4df4b5b636d56549dd6f 608 SUPERFAMILY SSF143975 1 418 2.62E-148 T 22-04-2016 PP4_RS21685 94f7b5edf82f4df4b5b636d56549dd6f 608 TIGRFAM TIGR01196 edd: phosphogluconate dehydratase 2 601 0.0 T 22-04-2016 IPR004786 6-phosphogluconate dehydratase GO:0004456|GO:0009255 KEGG: 00030+4.2.1.12|UniPathway: UPA00226 PP4_RS24690 aff160738672d39302d262057e366982 208 SUPERFAMILY SSF63965 1 205 8.24E-74 T 22-04-2016 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 PP4_RS24690 aff160738672d39302d262057e366982 208 Gene3D G3DSA:3.40.50.10230 1 204 1.1E-80 T 22-04-2016 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 PP4_RS24690 aff160738672d39302d262057e366982 208 PANTHER PTHR32439 2 203 6.6E-71 T 22-04-2016 PP4_RS24690 aff160738672d39302d262057e366982 208 Pfam PF02570 Precorrin-8X methylmutase 10 205 2.1E-71 T 22-04-2016 IPR003722 Cobalamin (vitamin B12) biosynthesis CobH/CbiC, precorrin-8X methylmutase GO:0009236|GO:0016993 PP4_RS07125 81b70df51eb4089aadab55668902149f 508 PANTHER PTHR23416:SF62 13 298 9.2E-38 T 22-04-2016 PP4_RS07125 81b70df51eb4089aadab55668902149f 508 SUPERFAMILY SSF51182 390 474 3.27E-15 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS07125 81b70df51eb4089aadab55668902149f 508 Gene3D G3DSA:2.60.120.10 411 469 6.8E-14 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS07125 81b70df51eb4089aadab55668902149f 508 Pfam PF03102 NeuB family 53 271 8.6E-40 T 22-04-2016 IPR013132 N-acetylneuraminic acid synthase, N-terminal GO:0016051 PP4_RS07125 81b70df51eb4089aadab55668902149f 508 PANTHER PTHR23416 13 298 9.2E-38 T 22-04-2016 PP4_RS07125 81b70df51eb4089aadab55668902149f 508 Pfam PF07883 Cupin domain 412 469 1.1E-12 T 22-04-2016 IPR013096 Cupin 2, conserved barrel PP4_RS07125 81b70df51eb4089aadab55668902149f 508 SUPERFAMILY SSF51569 14 293 3.85E-44 T 22-04-2016 PP4_RS07125 81b70df51eb4089aadab55668902149f 508 Gene3D G3DSA:3.20.20.70 14 272 1.6E-57 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS23655 7ba1e4d2ee1f67335ecf522639698192 305 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 181 242 8.3E-22 T 22-04-2016 IPR032819 tRNA pseudouridylate synthase B, C-terminal PP4_RS23655 7ba1e4d2ee1f67335ecf522639698192 305 PANTHER PTHR13767:SF2 2 302 1.2E-131 T 22-04-2016 PP4_RS23655 7ba1e4d2ee1f67335ecf522639698192 305 Gene3D G3DSA:2.30.130.10 244 303 1.9E-26 T 22-04-2016 IPR015947 PUA-like domain PP4_RS23655 7ba1e4d2ee1f67335ecf522639698192 305 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 11 302 18.944 T 22-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS23655 7ba1e4d2ee1f67335ecf522639698192 305 Pfam PF09157 Pseudouridine synthase II TruB, C-terminal 246 302 7.8E-20 T 22-04-2016 IPR015240 tRNA pseudouridine synthase II, TruB, subfamily 1, C-terminal GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS23655 7ba1e4d2ee1f67335ecf522639698192 305 SUPERFAMILY SSF88697 245 303 1.34E-14 T 22-04-2016 IPR015947 PUA-like domain PP4_RS23655 7ba1e4d2ee1f67335ecf522639698192 305 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 33 180 1.3E-56 T 22-04-2016 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 PP4_RS23655 7ba1e4d2ee1f67335ecf522639698192 305 PANTHER PTHR13767 2 302 1.2E-131 T 22-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS23655 7ba1e4d2ee1f67335ecf522639698192 305 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 12 219 4.0E-81 T 22-04-2016 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS23655 7ba1e4d2ee1f67335ecf522639698192 305 SUPERFAMILY SSF55120 11 240 7.77E-82 T 22-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS03870 3d9cb982f92421186813d9b2a3af72fd 396 Gene3D G3DSA:3.40.50.300 154 375 1.3E-25 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03870 3d9cb982f92421186813d9b2a3af72fd 396 PANTHER PTHR13696 154 386 1.2E-14 T 22-04-2016 PP4_RS03870 3d9cb982f92421186813d9b2a3af72fd 396 Pfam PF16968 Pilus assembly protein TadZ N-terminal 6 132 8.1E-47 T 22-04-2016 IPR031580 Pilus assembly protein TadZ, N-terminal PP4_RS03870 3d9cb982f92421186813d9b2a3af72fd 396 SUPERFAMILY SSF52540 154 375 2.3E-18 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03870 3d9cb982f92421186813d9b2a3af72fd 396 Gene3D G3DSA:3.40.50.2300 8 126 5.6E-5 T 22-04-2016 PP4_RS12695 60d7bccdd7c3be1a330bef234ae4b926 318 SUPERFAMILY SSF53448 4 236 2.81E-45 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS12695 60d7bccdd7c3be1a330bef234ae4b926 318 PANTHER PTHR22916:SF9 8 142 4.9E-49 T 22-04-2016 PP4_RS12695 60d7bccdd7c3be1a330bef234ae4b926 318 PANTHER PTHR22916:SF9 165 318 4.9E-49 T 22-04-2016 PP4_RS12695 60d7bccdd7c3be1a330bef234ae4b926 318 PANTHER PTHR22916 8 142 4.9E-49 T 22-04-2016 PP4_RS12695 60d7bccdd7c3be1a330bef234ae4b926 318 PANTHER PTHR22916 165 318 4.9E-49 T 22-04-2016 PP4_RS12695 60d7bccdd7c3be1a330bef234ae4b926 318 Pfam PF00535 Glycosyl transferase family 2 7 130 4.0E-17 T 22-04-2016 IPR001173 Glycosyltransferase 2-like PP4_RS12695 60d7bccdd7c3be1a330bef234ae4b926 318 Gene3D G3DSA:3.90.550.10 6 243 2.2E-40 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS24445 387a39eb90d92c6aff022f21b543ce89 662 Gene3D G3DSA:3.30.565.10 484 647 2.1E-29 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS24445 387a39eb90d92c6aff022f21b543ce89 662 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 530 643 2.0E-15 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS24445 387a39eb90d92c6aff022f21b543ce89 662 PRINTS PR00344 Bacterial sensor protein C-terminal signature 630 643 1.7E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS24445 387a39eb90d92c6aff022f21b543ce89 662 PRINTS PR00344 Bacterial sensor protein C-terminal signature 589 599 1.7E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS24445 387a39eb90d92c6aff022f21b543ce89 662 PRINTS PR00344 Bacterial sensor protein C-terminal signature 571 585 1.7E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS24445 387a39eb90d92c6aff022f21b543ce89 662 PRINTS PR00344 Bacterial sensor protein C-terminal signature 606 624 1.7E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS24445 387a39eb90d92c6aff022f21b543ce89 662 Pfam PF07696 7TMR-DISM extracellular 2 32 171 3.0E-35 T 22-04-2016 IPR011622 7TM-DISM receptor, extracellular domain, type 2 PP4_RS24445 387a39eb90d92c6aff022f21b543ce89 662 Gene3D G3DSA:1.10.287.130 411 478 5.4E-13 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS24445 387a39eb90d92c6aff022f21b543ce89 662 Pfam PF07695 7TM diverse intracellular signalling 184 386 4.8E-53 T 22-04-2016 IPR011623 7TM-DISM receptor, extracellular domain, type 1 PP4_RS24445 387a39eb90d92c6aff022f21b543ce89 662 PANTHER PTHR24423 132 140 4.3E-70 T 22-04-2016 PP4_RS24445 387a39eb90d92c6aff022f21b543ce89 662 PANTHER PTHR24423 363 653 4.3E-70 T 22-04-2016 PP4_RS24445 387a39eb90d92c6aff022f21b543ce89 662 SUPERFAMILY SSF47384 403 484 9.61E-17 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS24445 387a39eb90d92c6aff022f21b543ce89 662 PANTHER PTHR24423:SF559 132 140 4.3E-70 T 22-04-2016 PP4_RS24445 387a39eb90d92c6aff022f21b543ce89 662 PANTHER PTHR24423:SF559 363 653 4.3E-70 T 22-04-2016 PP4_RS24445 387a39eb90d92c6aff022f21b543ce89 662 SMART SM00388 418 483 1.9E-14 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS24445 387a39eb90d92c6aff022f21b543ce89 662 SUPERFAMILY SSF55874 473 643 4.85E-31 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS24445 387a39eb90d92c6aff022f21b543ce89 662 Pfam PF00512 His Kinase A (phospho-acceptor) domain 419 483 5.8E-13 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS24445 387a39eb90d92c6aff022f21b543ce89 662 SMART SM00387 530 646 3.1E-24 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS00750 8fa18f112766421e63d599457b0945e1 299 SUPERFAMILY SSF53850 95 295 1.36E-35 T 22-04-2016 PP4_RS00750 8fa18f112766421e63d599457b0945e1 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 66 3.1E-18 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS00750 8fa18f112766421e63d599457b0945e1 299 SUPERFAMILY SSF46785 4 81 3.13E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS00750 8fa18f112766421e63d599457b0945e1 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 6.0E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS00750 8fa18f112766421e63d599457b0945e1 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 6.0E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS00750 8fa18f112766421e63d599457b0945e1 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 6.0E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS00750 8fa18f112766421e63d599457b0945e1 299 Gene3D G3DSA:3.40.190.10 180 254 1.3E-12 T 22-04-2016 PP4_RS00750 8fa18f112766421e63d599457b0945e1 299 PANTHER PTHR30537 1 295 5.8E-146 T 22-04-2016 PP4_RS00750 8fa18f112766421e63d599457b0945e1 299 PANTHER PTHR30537:SF15 1 295 5.8E-146 T 22-04-2016 PP4_RS00750 8fa18f112766421e63d599457b0945e1 299 Pfam PF03466 LysR substrate binding domain 91 292 5.6E-35 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS00750 8fa18f112766421e63d599457b0945e1 299 Gene3D G3DSA:3.40.190.10 96 179 1.1E-31 T 22-04-2016 PP4_RS00750 8fa18f112766421e63d599457b0945e1 299 Gene3D G3DSA:1.10.10.10 2 82 3.7E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS25055 4de88167f4741045955cc04e23ac182e 344 PANTHER PTHR30329:SF2 1 294 3.3E-127 T 22-04-2016 PP4_RS25055 4de88167f4741045955cc04e23ac182e 344 PANTHER PTHR30329 1 294 3.3E-127 T 22-04-2016 PP4_RS25055 4de88167f4741045955cc04e23ac182e 344 Pfam PF00691 OmpA family 167 254 1.7E-13 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS25055 4de88167f4741045955cc04e23ac182e 344 SUPERFAMILY SSF103088 165 270 3.27E-21 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS25055 4de88167f4741045955cc04e23ac182e 344 Pfam PF13677 Membrane MotB of proton-channel complex MotA/MotB 16 63 1.9E-17 T 22-04-2016 IPR025713 Motility protein B, N-terminal domain PP4_RS25055 4de88167f4741045955cc04e23ac182e 344 Gene3D G3DSA:3.30.1330.60 162 270 4.3E-18 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS00015 6bcecb8f4dc46e371a6424cb55e29fdf 367 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 357 1.1E-36 T 22-04-2016 IPR003395 RecF/RecN/SMC, N-terminal PP4_RS00015 6bcecb8f4dc46e371a6424cb55e29fdf 367 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 367 94.939 T 22-04-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 PP4_RS00015 6bcecb8f4dc46e371a6424cb55e29fdf 367 SUPERFAMILY SSF52540 1 342 2.45E-34 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS00015 6bcecb8f4dc46e371a6424cb55e29fdf 367 PANTHER PTHR32182:SF0 1 361 2.8E-60 T 22-04-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 PP4_RS00015 6bcecb8f4dc46e371a6424cb55e29fdf 367 PANTHER PTHR32182 1 361 2.8E-60 T 22-04-2016 PP4_RS00015 6bcecb8f4dc46e371a6424cb55e29fdf 367 Gene3D G3DSA:3.40.50.300 1 162 2.4E-31 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS00015 6bcecb8f4dc46e371a6424cb55e29fdf 367 Gene3D G3DSA:3.40.50.300 232 341 2.4E-31 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS00015 6bcecb8f4dc46e371a6424cb55e29fdf 367 ProSitePatterns PS00618 RecF protein signature 2. 300 318 - T 22-04-2016 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 PP4_RS00015 6bcecb8f4dc46e371a6424cb55e29fdf 367 ProSitePatterns PS00617 RecF protein signature 1. 118 138 - T 22-04-2016 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 PP4_RS00015 6bcecb8f4dc46e371a6424cb55e29fdf 367 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 1 359 6.3E-117 T 22-04-2016 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 PP4_RS08180 77e4e04bedfb3898f17f4f588e06e92d 191 Pfam PF13470 PIN domain 9 115 6.7E-14 T 22-04-2016 IPR002716 PIN domain PP4_RS07255 439ae7a7ded42b6e81926c846a32d115 255 PANTHER PTHR30587:SF0 15 254 6.0E-126 T 22-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 PP4_RS07255 439ae7a7ded42b6e81926c846a32d115 255 Pfam PF00813 FliP family 56 248 5.9E-80 T 22-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 PP4_RS07255 439ae7a7ded42b6e81926c846a32d115 255 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 93 112 7.4E-67 T 22-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 PP4_RS07255 439ae7a7ded42b6e81926c846a32d115 255 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 226 251 7.4E-67 T 22-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 PP4_RS07255 439ae7a7ded42b6e81926c846a32d115 255 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 73 93 7.4E-67 T 22-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 PP4_RS07255 439ae7a7ded42b6e81926c846a32d115 255 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 181 201 7.4E-67 T 22-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 PP4_RS07255 439ae7a7ded42b6e81926c846a32d115 255 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 54 73 7.4E-67 T 22-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 PP4_RS07255 439ae7a7ded42b6e81926c846a32d115 255 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 202 223 7.4E-67 T 22-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 PP4_RS07255 439ae7a7ded42b6e81926c846a32d115 255 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 181 196 - T 22-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 PP4_RS07255 439ae7a7ded42b6e81926c846a32d115 255 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 229 241 - T 22-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 PP4_RS07255 439ae7a7ded42b6e81926c846a32d115 255 PANTHER PTHR30587 15 254 6.0E-126 T 22-04-2016 PP4_RS07255 439ae7a7ded42b6e81926c846a32d115 255 TIGRFAM TIGR01103 fliP: flagellar biosynthetic protein FliP 56 252 1.3E-88 T 22-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 PP4_RS07255 439ae7a7ded42b6e81926c846a32d115 255 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 152 164 3.8E-25 T 22-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 PP4_RS07255 439ae7a7ded42b6e81926c846a32d115 255 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 242 252 3.8E-25 T 22-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 PP4_RS07255 439ae7a7ded42b6e81926c846a32d115 255 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 112 124 3.8E-25 T 22-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 PP4_RS07255 439ae7a7ded42b6e81926c846a32d115 255 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 174 186 3.8E-25 T 22-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 PP4_RS07255 439ae7a7ded42b6e81926c846a32d115 255 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 52 61 3.8E-25 T 22-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 PP4_RS07255 439ae7a7ded42b6e81926c846a32d115 255 PRINTS PR00951 Flagellar biosynthetic protein FliP signature 124 138 3.8E-25 T 22-04-2016 IPR005837 Flagellar transport protein FliP GO:0009306|GO:0016020 PP4_RS08590 ff3b61dbe5ab6f37e434ad7ffc5bf423 436 PANTHER PTHR23508:SF1 9 414 8.4E-145 T 22-04-2016 PP4_RS08590 ff3b61dbe5ab6f37e434ad7ffc5bf423 436 SUPERFAMILY SSF103473 4 416 6.15E-61 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS08590 ff3b61dbe5ab6f37e434ad7ffc5bf423 436 PANTHER PTHR23508 9 414 8.4E-145 T 22-04-2016 PP4_RS08590 ff3b61dbe5ab6f37e434ad7ffc5bf423 436 Pfam PF07690 Major Facilitator Superfamily 16 334 1.6E-23 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS08590 ff3b61dbe5ab6f37e434ad7ffc5bf423 436 Gene3D G3DSA:1.20.1250.20 10 217 8.7E-22 T 22-04-2016 PP4_RS08590 ff3b61dbe5ab6f37e434ad7ffc5bf423 436 Gene3D G3DSA:1.20.1250.20 228 415 1.3E-16 T 22-04-2016 PP4_RS26200 e2ade85f3d890c00b362777132a3cc51 574 Gene3D G3DSA:1.10.3720.10 299 552 1.1E-28 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS26200 e2ade85f3d890c00b362777132a3cc51 574 PANTHER PTHR30193:SF3 34 292 7.3E-58 T 22-04-2016 PP4_RS26200 e2ade85f3d890c00b362777132a3cc51 574 SUPERFAMILY SSF161098 32 283 4.95E-41 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS26200 e2ade85f3d890c00b362777132a3cc51 574 Gene3D G3DSA:1.10.3720.10 33 285 2.1E-42 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS26200 e2ade85f3d890c00b362777132a3cc51 574 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 380 556 2.5E-7 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS26200 e2ade85f3d890c00b362777132a3cc51 574 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 112 283 1.5E-9 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS26200 e2ade85f3d890c00b362777132a3cc51 574 SUPERFAMILY SSF161098 306 553 1.31E-31 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS26200 e2ade85f3d890c00b362777132a3cc51 574 PANTHER PTHR30193 34 292 7.3E-58 T 22-04-2016 PP4_RS26200 e2ade85f3d890c00b362777132a3cc51 574 TIGRFAM TIGR03262 PhnU2: putative 2-aminoethylphosphonate ABC transporter, permease protein 33 570 1.8E-227 T 22-04-2016 IPR017664 2-aminoethylphosphonate ABC transport system, permease protein, putative PP4_RS21610 edc906fe33a8553cd712fd568c48560f 557 TIGRFAM TIGR00970 leuA_yeast: 2-isopropylmalate synthase 7 548 7.3E-240 T 22-04-2016 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 PP4_RS21610 edc906fe33a8553cd712fd568c48560f 557 SMART SM00917 422 549 3.8E-31 T 22-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 PP4_RS21610 edc906fe33a8553cd712fd568c48560f 557 Pfam PF08502 LeuA allosteric (dimerisation) domain 422 548 1.2E-28 T 22-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 PP4_RS21610 edc906fe33a8553cd712fd568c48560f 557 Gene3D G3DSA:3.20.20.70 11 394 1.5E-149 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS21610 edc906fe33a8553cd712fd568c48560f 557 SUPERFAMILY SSF110921 445 547 1.22E-29 T 22-04-2016 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 PP4_RS21610 edc906fe33a8553cd712fd568c48560f 557 PANTHER PTHR10277 1 557 1.1E-289 T 22-04-2016 PP4_RS21610 edc906fe33a8553cd712fd568c48560f 557 SUPERFAMILY SSF89000 388 438 3.92E-14 T 22-04-2016 PP4_RS21610 edc906fe33a8553cd712fd568c48560f 557 Pfam PF00682 HMGL-like 33 313 4.9E-75 T 22-04-2016 IPR000891 Pyruvate carboxyltransferase GO:0003824 PP4_RS21610 edc906fe33a8553cd712fd568c48560f 557 PANTHER PTHR10277:SF28 1 557 1.1E-289 T 22-04-2016 PP4_RS21610 edc906fe33a8553cd712fd568c48560f 557 SUPERFAMILY SSF51569 22 330 7.87E-100 T 22-04-2016 PP4_RS21610 edc906fe33a8553cd712fd568c48560f 557 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 40 56 - T 22-04-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 PP4_RS21610 edc906fe33a8553cd712fd568c48560f 557 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 243 256 - T 22-04-2016 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 PP4_RS21610 edc906fe33a8553cd712fd568c48560f 557 Hamap MF_00572 2-isopropylmalate synthase [leuA]. 8 550 54.921 T 22-04-2016 IPR005668 2-isopropylmalate synthase GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871|UniPathway: UPA00048 PP4_RS17470 b3d5a4c336de89fe3b80364a53e3aa87 172 PANTHER PTHR35175:SF2 13 88 2.6E-24 T 22-04-2016 PP4_RS17470 b3d5a4c336de89fe3b80364a53e3aa87 172 PANTHER PTHR35175 13 88 2.6E-24 T 22-04-2016 PP4_RS17470 b3d5a4c336de89fe3b80364a53e3aa87 172 Pfam PF06945 Protein of unknown function (DUF1289) 20 65 5.4E-16 T 22-04-2016 IPR010710 Protein of unknown function DUF1289 PP4_RS18955 fd5f85ef776eee68b90604c45f69a06f 1621 Pfam PF05088 Bacterial NAD-glutamate dehydrogenase 77 1608 0.0 T 22-04-2016 IPR028971 NAD-glutamate dehydrogenase GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 PP4_RS18955 fd5f85ef776eee68b90604c45f69a06f 1621 SUPERFAMILY SSF51735 1090 1221 1.25E-28 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS18955 fd5f85ef776eee68b90604c45f69a06f 1621 SUPERFAMILY SSF51735 952 1054 1.25E-28 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS18955 fd5f85ef776eee68b90604c45f69a06f 1621 PANTHER PTHR11606:SF1 1129 1374 0.0 T 22-04-2016 PP4_RS18955 fd5f85ef776eee68b90604c45f69a06f 1621 PANTHER PTHR11606:SF1 676 1104 0.0 T 22-04-2016 PP4_RS18955 fd5f85ef776eee68b90604c45f69a06f 1621 PANTHER PTHR11606:SF1 219 566 0.0 T 22-04-2016 PP4_RS18955 fd5f85ef776eee68b90604c45f69a06f 1621 PANTHER PTHR11606:SF1 50 151 0.0 T 22-04-2016 PP4_RS18955 fd5f85ef776eee68b90604c45f69a06f 1621 PIRSF PIRSF036761 2 1615 0.0 T 22-04-2016 IPR007780 NAD-glutamate dehydrogenase, bacteria GO:0004352|GO:0019551 KEGG: 00220+1.4.1.2|KEGG: 00250+1.4.1.2|KEGG: 00430+1.4.1.2|KEGG: 00910+1.4.1.2|MetaCyc: PWY-5022|MetaCyc: PWY-6728|MetaCyc: PWY-7126 PP4_RS18955 fd5f85ef776eee68b90604c45f69a06f 1621 PANTHER PTHR11606 1129 1374 0.0 T 22-04-2016 PP4_RS18955 fd5f85ef776eee68b90604c45f69a06f 1621 PANTHER PTHR11606 676 1104 0.0 T 22-04-2016 PP4_RS18955 fd5f85ef776eee68b90604c45f69a06f 1621 PANTHER PTHR11606 219 566 0.0 T 22-04-2016 PP4_RS18955 fd5f85ef776eee68b90604c45f69a06f 1621 PANTHER PTHR11606 50 151 0.0 T 22-04-2016 PP4_RS18955 fd5f85ef776eee68b90604c45f69a06f 1621 SUPERFAMILY SSF53223 761 963 5.85E-23 T 22-04-2016 PP4_RS18955 fd5f85ef776eee68b90604c45f69a06f 1621 Gene3D G3DSA:3.40.50.720 949 1060 1.5E-35 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS18955 fd5f85ef776eee68b90604c45f69a06f 1621 Gene3D G3DSA:3.40.50.720 1115 1187 1.5E-35 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS13365 4b9f8025c939b6ae0fc70d15af651ca0 418 Gene3D G3DSA:1.10.700.10 293 417 1.0E-53 T 22-04-2016 IPR011986 Extradiol ring-cleavage dioxygenase LigAB, LigA subunit PP4_RS13365 4b9f8025c939b6ae0fc70d15af651ca0 418 Pfam PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit 321 407 5.0E-33 T 22-04-2016 IPR011986 Extradiol ring-cleavage dioxygenase LigAB, LigA subunit PP4_RS13365 4b9f8025c939b6ae0fc70d15af651ca0 418 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 8 269 6.3E-58 T 22-04-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 PP4_RS13365 4b9f8025c939b6ae0fc70d15af651ca0 418 SUPERFAMILY SSF53213 2 294 7.46E-88 T 22-04-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 PP4_RS13365 4b9f8025c939b6ae0fc70d15af651ca0 418 Gene3D G3DSA:3.40.830.10 1 292 2.1E-104 T 22-04-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 PP4_RS13365 4b9f8025c939b6ae0fc70d15af651ca0 418 SUPERFAMILY SSF48076 293 417 9.42E-47 T 22-04-2016 IPR011986 Extradiol ring-cleavage dioxygenase LigAB, LigA subunit PP4_RS18635 ec5b502dcc8ef17ee0721c025e8d7e65 771 SMART SM00487 297 481 1.2E-31 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PP4_RS18635 ec5b502dcc8ef17ee0721c025e8d7e65 771 SUPERFAMILY SSF52540 288 512 2.59E-59 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS18635 ec5b502dcc8ef17ee0721c025e8d7e65 771 Gene3D G3DSA:3.40.50.300 596 736 1.1E-20 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS18635 ec5b502dcc8ef17ee0721c025e8d7e65 771 SUPERFAMILY SSF52540 513 763 2.6E-61 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS18635 ec5b502dcc8ef17ee0721c025e8d7e65 771 Gene3D G3DSA:3.40.50.300 289 470 3.2E-30 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS18635 ec5b502dcc8ef17ee0721c025e8d7e65 771 Pfam PF00176 SNF2 family N-terminal domain 317 584 1.1E-63 T 22-04-2016 IPR000330 SNF2-related, N-terminal domain GO:0005524 PP4_RS18635 ec5b502dcc8ef17ee0721c025e8d7e65 771 PANTHER PTHR10799 294 762 6.2E-170 T 22-04-2016 PP4_RS18635 ec5b502dcc8ef17ee0721c025e8d7e65 771 SMART SM00490 628 708 5.4E-19 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS18635 ec5b502dcc8ef17ee0721c025e8d7e65 771 Pfam PF00271 Helicase conserved C-terminal domain 600 708 1.2E-17 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS11705 7d92778da84cf424fd6151e748cdadc5 463 Gene3D G3DSA:3.20.20.30 3 315 1.8E-132 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS11705 7d92778da84cf424fd6151e748cdadc5 463 Gene3D G3DSA:3.20.20.30 352 438 1.8E-132 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS11705 7d92778da84cf424fd6151e748cdadc5 463 PIRSF PIRSF000337 2 449 3.3E-161 T 22-04-2016 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 PP4_RS11705 7d92778da84cf424fd6151e748cdadc5 463 Pfam PF00296 Luciferase-like monooxygenase 23 392 2.3E-53 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS11705 7d92778da84cf424fd6151e748cdadc5 463 PANTHER PTHR30011:SF16 1 453 1.0E-230 T 22-04-2016 PP4_RS11705 7d92778da84cf424fd6151e748cdadc5 463 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 7 434 8.3E-168 T 22-04-2016 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 PP4_RS11705 7d92778da84cf424fd6151e748cdadc5 463 PANTHER PTHR30011 1 453 1.0E-230 T 22-04-2016 PP4_RS11705 7d92778da84cf424fd6151e748cdadc5 463 SUPERFAMILY SSF51679 3 438 1.15E-125 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS04570 180d300b89a57e4e951269c935e02136 251 PANTHER PTHR37323 1 251 1.1E-82 T 22-04-2016 PP4_RS04570 180d300b89a57e4e951269c935e02136 251 Pfam PF13444 Acetyltransferase (GNAT) domain 33 133 3.1E-28 T 22-04-2016 PP4_RS04570 180d300b89a57e4e951269c935e02136 251 SUPERFAMILY SSF55729 24 223 1.2E-35 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS04570 180d300b89a57e4e951269c935e02136 251 PANTHER PTHR37323:SF1 1 251 1.1E-82 T 22-04-2016 PP4_RS04570 180d300b89a57e4e951269c935e02136 251 Gene3D G3DSA:3.40.630.30 24 172 3.4E-23 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS26950 8327141c08744b2cae752b9bb7c7061f 151 PANTHER PTHR11241 1 149 9.9E-52 T 22-04-2016 PP4_RS26950 8327141c08744b2cae752b9bb7c7061f 151 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 6 150 33.329 T 22-04-2016 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|UniPathway: UPA00610 PP4_RS26950 8327141c08744b2cae752b9bb7c7061f 151 TIGRFAM TIGR00576 dut: dUTP diphosphatase 10 150 6.0E-48 T 22-04-2016 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7206|UniPathway: UPA00610 PP4_RS26950 8327141c08744b2cae752b9bb7c7061f 151 SUPERFAMILY SSF51283 2 149 2.09E-53 T 22-04-2016 IPR029054 dUTPase-like PP4_RS26950 8327141c08744b2cae752b9bb7c7061f 151 Gene3D G3DSA:2.70.40.10 7 149 3.8E-53 T 22-04-2016 IPR029054 dUTPase-like PP4_RS26950 8327141c08744b2cae752b9bb7c7061f 151 Pfam PF00692 dUTPase 16 149 2.0E-40 T 22-04-2016 IPR008180 Deoxyuridine triphosphate nucleotidohydrolase/Deoxycytidine triphosphate deaminase GO:0016787|GO:0046080 PP4_RS11020 c3508b4c5141f9f540d0e411e07c3886 204 PANTHER PTHR30086:SF3 1 199 1.7E-43 T 22-04-2016 PP4_RS11020 c3508b4c5141f9f540d0e411e07c3886 204 Pfam PF01810 LysE type translocator 16 199 1.3E-19 T 22-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PP4_RS11020 c3508b4c5141f9f540d0e411e07c3886 204 PANTHER PTHR30086 1 199 1.7E-43 T 22-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PP4_RS17745 a78a82393cf7f534d08fd466a6680942 582 SUPERFAMILY SSF52540 297 530 6.95E-56 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS17745 a78a82393cf7f534d08fd466a6680942 582 Pfam PF02954 Bacterial regulatory protein, Fis family 551 580 2.8E-9 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS17745 a78a82393cf7f534d08fd466a6680942 582 Gene3D G3DSA:1.10.10.60 551 580 8.9E-10 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS17745 a78a82393cf7f534d08fd466a6680942 582 Gene3D G3DSA:3.40.50.300 295 463 7.0E-47 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS17745 a78a82393cf7f534d08fd466a6680942 582 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 314 327 - T 22-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 PP4_RS17745 a78a82393cf7f534d08fd466a6680942 582 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 565 582 2.1E-5 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS17745 a78a82393cf7f534d08fd466a6680942 582 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 548 565 2.1E-5 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS17745 a78a82393cf7f534d08fd466a6680942 582 SUPERFAMILY SSF46689 538 580 2.08E-7 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS17745 a78a82393cf7f534d08fd466a6680942 582 Gene3D G3DSA:1.10.8.60 470 532 1.6E-12 T 22-04-2016 PP4_RS17745 a78a82393cf7f534d08fd466a6680942 582 Pfam PF00158 Sigma-54 interaction domain 295 455 1.4E-61 T 22-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 PP4_RS17745 a78a82393cf7f534d08fd466a6680942 582 PANTHER PTHR32071 295 580 4.3E-119 T 22-04-2016 PP4_RS17745 a78a82393cf7f534d08fd466a6680942 582 SMART SM00382 310 454 3.8E-7 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS17745 a78a82393cf7f534d08fd466a6680942 582 Gene3D G3DSA:3.30.450.20 201 277 6.6E-4 T 22-04-2016 PP4_RS16230 37a2fc6c741da1e99844daa7d9f9c6a6 61 TIGRFAM TIGR03493 cellullose_BcsF: celllulose biosynthesis operon protein BcsF/YhjT 1 61 1.8E-22 T 22-04-2016 IPR019995 Cellulose biosynthesis, BcsF/YhjT PP4_RS16230 37a2fc6c741da1e99844daa7d9f9c6a6 61 Pfam PF11120 Cellulose biosynthesis protein BcsF 1 56 8.7E-17 T 22-04-2016 IPR019995 Cellulose biosynthesis, BcsF/YhjT PP4_RS07880 0be712f35e624334415d9fa588d36b57 430 Pfam PF00266 Aminotransferase class-V 102 413 2.0E-31 T 22-04-2016 IPR000192 Aminotransferase class V domain PP4_RS07880 0be712f35e624334415d9fa588d36b57 430 PANTHER PTHR11601 52 426 8.9E-66 T 22-04-2016 PP4_RS07880 0be712f35e624334415d9fa588d36b57 430 TIGRFAM TIGR01409 TAT_signal_seq: Tat (twin-arginine translocation) pathway signal sequence 3 32 4.1E-4 T 22-04-2016 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal PP4_RS07880 0be712f35e624334415d9fa588d36b57 430 Gene3D G3DSA:3.40.640.10 68 321 6.2E-39 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS07880 0be712f35e624334415d9fa588d36b57 430 Gene3D G3DSA:3.90.1150.10 322 426 1.5E-15 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS07880 0be712f35e624334415d9fa588d36b57 430 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 258 278 - T 22-04-2016 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site PP4_RS07880 0be712f35e624334415d9fa588d36b57 430 SUPERFAMILY SSF53383 42 428 4.13E-63 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS07880 0be712f35e624334415d9fa588d36b57 430 PANTHER PTHR11601:SF17 52 426 8.9E-66 T 22-04-2016 PP4_RS25225 e50eb6eaacaea3650f8d9296037b14aa 467 Gene3D G3DSA:3.40.50.10320 306 421 2.5E-18 T 22-04-2016 IPR024078 Putative deacetylase LmbE-like domain PP4_RS25225 e50eb6eaacaea3650f8d9296037b14aa 467 Gene3D G3DSA:3.40.50.10320 178 266 2.5E-18 T 22-04-2016 IPR024078 Putative deacetylase LmbE-like domain PP4_RS25225 e50eb6eaacaea3650f8d9296037b14aa 467 PANTHER PTHR12993 134 279 2.2E-49 T 22-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related PP4_RS25225 e50eb6eaacaea3650f8d9296037b14aa 467 PANTHER PTHR12993:SF10 308 387 2.2E-49 T 22-04-2016 PP4_RS25225 e50eb6eaacaea3650f8d9296037b14aa 467 PANTHER PTHR12993:SF10 134 279 2.2E-49 T 22-04-2016 PP4_RS25225 e50eb6eaacaea3650f8d9296037b14aa 467 SUPERFAMILY SSF102588 179 442 1.23E-31 T 22-04-2016 IPR024078 Putative deacetylase LmbE-like domain PP4_RS25225 e50eb6eaacaea3650f8d9296037b14aa 467 Pfam PF02585 GlcNAc-PI de-N-acetylase 182 350 1.8E-13 T 22-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related PP4_RS25225 e50eb6eaacaea3650f8d9296037b14aa 467 PANTHER PTHR12993 308 387 2.2E-49 T 22-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related PP4_RS01155 4771a9c3e88dbac8ab08a3afaa4fb4e2 479 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 303 467 6.2E-18 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS01155 4771a9c3e88dbac8ab08a3afaa4fb4e2 479 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 46 215 2.0E-15 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS01155 4771a9c3e88dbac8ab08a3afaa4fb4e2 479 SUPERFAMILY SSF161098 279 463 1.1E-23 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS01155 4771a9c3e88dbac8ab08a3afaa4fb4e2 479 SUPERFAMILY SSF161098 22 206 2.62E-26 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS01155 4771a9c3e88dbac8ab08a3afaa4fb4e2 479 PANTHER PTHR30151:SF8 204 477 2.3E-86 T 22-04-2016 PP4_RS01155 4771a9c3e88dbac8ab08a3afaa4fb4e2 479 PANTHER PTHR30151 204 477 2.3E-86 T 22-04-2016 PP4_RS01155 4771a9c3e88dbac8ab08a3afaa4fb4e2 479 Gene3D G3DSA:1.10.3720.10 278 475 4.7E-18 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS01155 4771a9c3e88dbac8ab08a3afaa4fb4e2 479 Gene3D G3DSA:1.10.3720.10 21 215 9.0E-17 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS10800 f52eae40377fed9fe24ff51cfddcd35a 444 SUPERFAMILY SSF103473 21 442 5.89E-72 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS10800 f52eae40377fed9fe24ff51cfddcd35a 444 PANTHER PTHR23508 19 443 3.9E-142 T 22-04-2016 PP4_RS10800 f52eae40377fed9fe24ff51cfddcd35a 444 Gene3D G3DSA:1.20.1250.20 253 440 1.6E-24 T 22-04-2016 PP4_RS10800 f52eae40377fed9fe24ff51cfddcd35a 444 Gene3D G3DSA:1.20.1250.20 25 232 1.3E-28 T 22-04-2016 PP4_RS10800 f52eae40377fed9fe24ff51cfddcd35a 444 Pfam PF07690 Major Facilitator Superfamily 31 390 2.5E-36 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS10800 f52eae40377fed9fe24ff51cfddcd35a 444 ProSitePatterns PS00216 Sugar transport proteins signature 1. 310 327 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PP4_RS10800 f52eae40377fed9fe24ff51cfddcd35a 444 PANTHER PTHR23508:SF17 19 443 3.9E-142 T 22-04-2016 PP4_RS08760 df828e9a377ad880d245a299d46a6b6b 175 PANTHER PTHR37816:SF1 2 175 6.4E-32 T 22-04-2016 PP4_RS08760 df828e9a377ad880d245a299d46a6b6b 175 SUPERFAMILY SSF52540 2 127 3.04E-18 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS08760 df828e9a377ad880d245a299d46a6b6b 175 Gene3D G3DSA:3.40.50.300 2 113 2.1E-15 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS08760 df828e9a377ad880d245a299d46a6b6b 175 PANTHER PTHR37816 2 175 6.4E-32 T 22-04-2016 PP4_RS07325 29f111b90e84cd7fdcf1fc4727bdd8cc 262 Pfam PF13614 AAA domain 1 179 1.1E-40 T 22-04-2016 IPR025669 AAA domain PP4_RS07325 29f111b90e84cd7fdcf1fc4727bdd8cc 262 SUPERFAMILY SSF52540 1 255 1.8E-54 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS07325 29f111b90e84cd7fdcf1fc4727bdd8cc 262 Gene3D G3DSA:3.40.50.300 1 254 6.9E-56 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS07325 29f111b90e84cd7fdcf1fc4727bdd8cc 262 PANTHER PTHR13696 1 253 3.9E-138 T 22-04-2016 PP4_RS07325 29f111b90e84cd7fdcf1fc4727bdd8cc 262 PANTHER PTHR13696:SF69 1 253 3.9E-138 T 22-04-2016 PP4_RS24850 99cd74494da7734910c3a41729385d90 365 Gene3D G3DSA:1.50.10.10 13 363 3.5E-48 T 22-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 PP4_RS24850 99cd74494da7734910c3a41729385d90 365 SUPERFAMILY SSF48208 12 363 7.48E-77 T 22-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 PP4_RS24850 99cd74494da7734910c3a41729385d90 365 Pfam PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) 39 357 7.3E-36 T 22-04-2016 PP4_RS24850 99cd74494da7734910c3a41729385d90 365 PANTHER PTHR15108 1 306 7.1E-12 T 22-04-2016 PP4_RS03400 05a370d181822e0b5fd81ad6bd3f5bdf 194 SUPERFAMILY SSF54211 8 120 2.96E-36 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PP4_RS03400 05a370d181822e0b5fd81ad6bd3f5bdf 194 Gene3D G3DSA:3.30.230.30 9 120 9.6E-42 T 22-04-2016 IPR001498 Impact, N-terminal PP4_RS03400 05a370d181822e0b5fd81ad6bd3f5bdf 194 PANTHER PTHR16301 15 193 1.8E-53 T 22-04-2016 IPR023582 Impact family PP4_RS03400 05a370d181822e0b5fd81ad6bd3f5bdf 194 SUPERFAMILY SSF54980 127 192 5.25E-13 T 22-04-2016 IPR009022 Elongation factor G, III-V domain PP4_RS03400 05a370d181822e0b5fd81ad6bd3f5bdf 194 Pfam PF09186 Domain of unknown function (DUF1949) 132 188 1.9E-11 T 22-04-2016 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal PP4_RS03400 05a370d181822e0b5fd81ad6bd3f5bdf 194 Pfam PF01205 Uncharacterized protein family UPF0029 16 116 1.5E-26 T 22-04-2016 IPR001498 Impact, N-terminal PP4_RS03400 05a370d181822e0b5fd81ad6bd3f5bdf 194 Gene3D G3DSA:3.30.70.240 126 193 4.2E-21 T 22-04-2016 IPR000640 Translation elongation factor EFG, V domain PP4_RS02055 5976e605807633714b9f99cdfa585d1f 607 Pfam PF00326 Prolyl oligopeptidase family 401 606 4.5E-46 T 22-04-2016 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 PP4_RS02055 5976e605807633714b9f99cdfa585d1f 607 SUPERFAMILY SSF53474 357 605 8.66E-66 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS02055 5976e605807633714b9f99cdfa585d1f 607 Gene3D G3DSA:3.40.50.1820 303 605 2.3E-71 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS02055 5976e605807633714b9f99cdfa585d1f 607 Gene3D G3DSA:2.120.10.60 83 237 5.1E-10 T 22-04-2016 PP4_RS02055 5976e605807633714b9f99cdfa585d1f 607 PANTHER PTHR11731:SF75 30 263 1.9E-130 T 22-04-2016 PP4_RS02055 5976e605807633714b9f99cdfa585d1f 607 PANTHER PTHR11731:SF75 281 606 1.9E-130 T 22-04-2016 PP4_RS02055 5976e605807633714b9f99cdfa585d1f 607 SUPERFAMILY SSF82171 44 339 2.35E-9 T 22-04-2016 PP4_RS02055 5976e605807633714b9f99cdfa585d1f 607 PANTHER PTHR11731 30 263 1.9E-130 T 22-04-2016 PP4_RS02055 5976e605807633714b9f99cdfa585d1f 607 PANTHER PTHR11731 281 606 1.9E-130 T 22-04-2016 PP4_RS16390 9fe6be858150856390cfadbd99e1ed1d 288 PANTHER PTHR30126 1 286 1.1E-62 T 22-04-2016 PP4_RS16390 9fe6be858150856390cfadbd99e1ed1d 288 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 1.9E-19 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16390 9fe6be858150856390cfadbd99e1ed1d 288 Gene3D G3DSA:3.40.190.10 90 172 8.0E-14 T 22-04-2016 PP4_RS16390 9fe6be858150856390cfadbd99e1ed1d 288 Gene3D G3DSA:1.10.10.10 1 85 1.5E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16390 9fe6be858150856390cfadbd99e1ed1d 288 Pfam PF03466 LysR substrate binding domain 87 286 2.7E-39 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS16390 9fe6be858150856390cfadbd99e1ed1d 288 PANTHER PTHR30126:SF11 1 286 1.1E-62 T 22-04-2016 PP4_RS16390 9fe6be858150856390cfadbd99e1ed1d 288 SUPERFAMILY SSF53850 90 286 3.76E-37 T 22-04-2016 PP4_RS16390 9fe6be858150856390cfadbd99e1ed1d 288 Gene3D G3DSA:3.40.190.10 173 257 6.3E-22 T 22-04-2016 PP4_RS16390 9fe6be858150856390cfadbd99e1ed1d 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 5.3E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16390 9fe6be858150856390cfadbd99e1ed1d 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 5.3E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16390 9fe6be858150856390cfadbd99e1ed1d 288 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 5.3E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16390 9fe6be858150856390cfadbd99e1ed1d 288 SUPERFAMILY SSF46785 2 105 3.86E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS08815 7835885d510f8a7eead7fe3c3b4be146 429 SUPERFAMILY SSF51905 32 335 1.53E-44 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS08815 7835885d510f8a7eead7fe3c3b4be146 429 PANTHER PTHR13847 1 427 2.0E-120 T 22-04-2016 PP4_RS08815 7835885d510f8a7eead7fe3c3b4be146 429 PANTHER PTHR13847:SF196 1 427 2.0E-120 T 22-04-2016 PP4_RS08815 7835885d510f8a7eead7fe3c3b4be146 429 Gene3D G3DSA:3.50.50.60 177 257 5.1E-45 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS08815 7835885d510f8a7eead7fe3c3b4be146 429 Gene3D G3DSA:3.50.50.60 350 405 5.1E-45 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS08815 7835885d510f8a7eead7fe3c3b4be146 429 Gene3D G3DSA:3.50.50.60 24 123 5.1E-45 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS08815 7835885d510f8a7eead7fe3c3b4be146 429 Pfam PF01266 FAD dependent oxidoreductase 34 385 1.3E-52 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PP4_RS26185 9d44b53a777b253b998dddbacc8af44a 454 Gene3D G3DSA:3.40.50.300 109 168 1.4E-22 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26185 9d44b53a777b253b998dddbacc8af44a 454 Gene3D G3DSA:3.40.50.300 3 77 1.4E-22 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26185 9d44b53a777b253b998dddbacc8af44a 454 Pfam PF01926 50S ribosome-binding GTPase 7 152 7.3E-17 T 22-04-2016 IPR006073 GTP binding domain GO:0005525 PP4_RS26185 9d44b53a777b253b998dddbacc8af44a 454 Pfam PF11981 Domain of unknown function (DUF3482) 165 451 1.2E-111 T 22-04-2016 IPR021871 Protein of unknown function DUF3482 PP4_RS26185 9d44b53a777b253b998dddbacc8af44a 454 PANTHER PTHR11649 116 152 7.9E-18 T 22-04-2016 PP4_RS26185 9d44b53a777b253b998dddbacc8af44a 454 PANTHER PTHR11649 3 79 7.9E-18 T 22-04-2016 PP4_RS26185 9d44b53a777b253b998dddbacc8af44a 454 SUPERFAMILY SSF52540 4 162 8.8E-19 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS09450 2b312e3a8881f377a036dfad7a956018 304 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 178 257 2.3E-11 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS09450 2b312e3a8881f377a036dfad7a956018 304 Gene3D G3DSA:1.10.760.10 48 159 2.7E-34 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS09450 2b312e3a8881f377a036dfad7a956018 304 SUPERFAMILY SSF46626 18 159 7.53E-30 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS09450 2b312e3a8881f377a036dfad7a956018 304 SUPERFAMILY SSF46626 166 287 6.11E-22 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS09450 2b312e3a8881f377a036dfad7a956018 304 Gene3D G3DSA:1.10.760.10 171 261 9.8E-17 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS09450 2b312e3a8881f377a036dfad7a956018 304 PANTHER PTHR35008 10 299 3.0E-97 T 22-04-2016 PP4_RS09450 2b312e3a8881f377a036dfad7a956018 304 PANTHER PTHR35008:SF4 10 299 3.0E-97 T 22-04-2016 PP4_RS03555 c707bd1eba30e2ad8fc771e5d7fbf4d8 298 Pfam PF03466 LysR substrate binding domain 89 293 9.8E-45 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS03555 c707bd1eba30e2ad8fc771e5d7fbf4d8 298 Gene3D G3DSA:1.10.10.10 6 85 6.4E-26 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS03555 c707bd1eba30e2ad8fc771e5d7fbf4d8 298 PANTHER PTHR30537:SF20 1 295 2.6E-161 T 22-04-2016 PP4_RS03555 c707bd1eba30e2ad8fc771e5d7fbf4d8 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 64 8.3E-20 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS03555 c707bd1eba30e2ad8fc771e5d7fbf4d8 298 Gene3D G3DSA:3.40.190.10 180 257 1.9E-21 T 22-04-2016 PP4_RS03555 c707bd1eba30e2ad8fc771e5d7fbf4d8 298 SUPERFAMILY SSF53850 91 294 2.48E-42 T 22-04-2016 PP4_RS03555 c707bd1eba30e2ad8fc771e5d7fbf4d8 298 PANTHER PTHR30537 1 295 2.6E-161 T 22-04-2016 PP4_RS03555 c707bd1eba30e2ad8fc771e5d7fbf4d8 298 Gene3D G3DSA:3.40.190.10 93 179 4.6E-25 T 22-04-2016 PP4_RS03555 c707bd1eba30e2ad8fc771e5d7fbf4d8 298 SUPERFAMILY SSF46785 7 113 1.41E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS24215 ad22effd14ec15f7fdbac56828556b0c 436 PIRSF PIRSF036492 1 435 3.2E-160 T 22-04-2016 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0004030|GO:0006081|GO:0055114 PP4_RS24215 ad22effd14ec15f7fdbac56828556b0c 436 Gene3D G3DSA:3.40.309.10 230 412 5.7E-55 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PP4_RS24215 ad22effd14ec15f7fdbac56828556b0c 436 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 242 253 - T 22-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 PP4_RS24215 ad22effd14ec15f7fdbac56828556b0c 436 SUPERFAMILY SSF53720 3 433 3.4E-115 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS24215 ad22effd14ec15f7fdbac56828556b0c 436 Gene3D G3DSA:3.40.605.10 4 229 1.3E-59 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS24215 ad22effd14ec15f7fdbac56828556b0c 436 Pfam PF00171 Aldehyde dehydrogenase family 5 432 1.6E-88 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PP4_RS24215 ad22effd14ec15f7fdbac56828556b0c 436 PANTHER PTHR11699 9 434 5.8E-142 T 22-04-2016 PP4_RS04700 36e4d7a66b7acebc08d2f7baf101538f 448 TIGRFAM TIGR00895 2A0115: MFS transporter, aromatic acid:H+ symporter (AAHS) family 13 412 1.3E-158 T 22-04-2016 IPR004746 Major facilitator superfamily, aromatic acid:H+ symporter family GO:0005215|GO:0006810|GO:0016021 PP4_RS04700 36e4d7a66b7acebc08d2f7baf101538f 448 PANTHER PTHR24064 12 434 3.8E-186 T 22-04-2016 PP4_RS04700 36e4d7a66b7acebc08d2f7baf101538f 448 ProSitePatterns PS00217 Sugar transport proteins signature 2. 126 151 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PP4_RS04700 36e4d7a66b7acebc08d2f7baf101538f 448 ProSitePatterns PS00216 Sugar transport proteins signature 1. 84 100 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PP4_RS04700 36e4d7a66b7acebc08d2f7baf101538f 448 Pfam PF07690 Major Facilitator Superfamily 35 405 2.2E-40 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS04700 36e4d7a66b7acebc08d2f7baf101538f 448 Gene3D G3DSA:1.20.1250.20 20 209 5.6E-39 T 22-04-2016 PP4_RS04700 36e4d7a66b7acebc08d2f7baf101538f 448 SUPERFAMILY SSF103473 13 436 8.24E-77 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS04700 36e4d7a66b7acebc08d2f7baf101538f 448 Gene3D G3DSA:1.20.1250.20 265 436 1.1E-22 T 22-04-2016 PP4_RS04700 36e4d7a66b7acebc08d2f7baf101538f 448 PANTHER PTHR24064:SF234 12 434 3.8E-186 T 22-04-2016 PP4_RS25210 de29aaf037fecf4341a92212c8acaf8b 363 PANTHER PTHR12526:SF374 63 327 2.0E-32 T 22-04-2016 PP4_RS25210 de29aaf037fecf4341a92212c8acaf8b 363 SUPERFAMILY SSF53756 62 353 7.33E-48 T 22-04-2016 PP4_RS25210 de29aaf037fecf4341a92212c8acaf8b 363 Pfam PF00534 Glycosyl transferases group 1 183 328 1.2E-26 T 22-04-2016 IPR001296 Glycosyl transferase, family 1 PP4_RS25210 de29aaf037fecf4341a92212c8acaf8b 363 PANTHER PTHR12526 63 327 2.0E-32 T 22-04-2016 PP4_RS25210 de29aaf037fecf4341a92212c8acaf8b 363 Gene3D G3DSA:3.40.50.2000 177 331 2.2E-27 T 22-04-2016 PP4_RS05510 6f59b69579095ab0185de0e4b20a1918 295 SUPERFAMILY SSF51735 8 168 2.37E-42 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS05510 6f59b69579095ab0185de0e4b20a1918 295 Gene3D G3DSA:1.10.1040.10 170 293 9.8E-28 T 22-04-2016 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 PP4_RS05510 6f59b69579095ab0185de0e4b20a1918 295 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 8 167 2.4E-47 T 22-04-2016 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0004616|GO:0055114 PP4_RS05510 6f59b69579095ab0185de0e4b20a1918 295 Gene3D G3DSA:3.40.50.720 8 167 1.7E-56 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS05510 6f59b69579095ab0185de0e4b20a1918 295 SUPERFAMILY SSF48179 169 293 7.37E-26 T 22-04-2016 IPR008927 6-phosphogluconate dehydrogenase C-terminal domain-like GO:0055114 PP4_RS05510 6f59b69579095ab0185de0e4b20a1918 295 PANTHER PTHR22981 1 292 9.9E-152 T 22-04-2016 PP4_RS05510 6f59b69579095ab0185de0e4b20a1918 295 PANTHER PTHR22981:SF48 1 292 9.9E-152 T 22-04-2016 PP4_RS05510 6f59b69579095ab0185de0e4b20a1918 295 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 170 291 1.5E-23 T 22-04-2016 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 PP4_RS05510 6f59b69579095ab0185de0e4b20a1918 295 PIRSF PIRSF000103 2 295 1.1E-70 T 22-04-2016 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 PP4_RS15225 e1054b13777a55b1860c7cad60b5ec42 143 PANTHER PTHR41553:SF1 15 139 1.8E-12 T 22-04-2016 PP4_RS15225 e1054b13777a55b1860c7cad60b5ec42 143 PANTHER PTHR41553 15 139 1.8E-12 T 22-04-2016 PP4_RS15225 e1054b13777a55b1860c7cad60b5ec42 143 Pfam PF07332 Putative Actinobacterial Holin-X, holin superfamily III 25 139 7.6E-25 T 22-04-2016 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III PP4_RS24520 a8992c67f2a82bbcf82b3b6351904b24 54 Pfam PF03889 Domain of unknown function 10 40 1.1E-15 T 22-04-2016 IPR005589 Protein of unknown function DUF331 PP4_RS25705 27d104cbe564bc8573fe99e63507d274 557 Hamap MF_00577 Urocanate hydratase [hutU]. 2 556 50.679 T 22-04-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 PP4_RS25705 27d104cbe564bc8573fe99e63507d274 557 Pfam PF01175 Urocanase 12 547 2.0E-262 T 22-04-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 PP4_RS25705 27d104cbe564bc8573fe99e63507d274 557 Gene3D G3DSA:3.40.1770.10 360 555 8.2E-163 T 22-04-2016 PP4_RS25705 27d104cbe564bc8573fe99e63507d274 557 Gene3D G3DSA:3.40.1770.10 8 141 8.2E-163 T 22-04-2016 PP4_RS25705 27d104cbe564bc8573fe99e63507d274 557 ProSitePatterns PS01233 Urocanase signature. 442 457 - T 22-04-2016 IPR023636 Urocanase conserved site GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 PP4_RS25705 27d104cbe564bc8573fe99e63507d274 557 SUPERFAMILY SSF111326 7 555 1.83E-263 T 22-04-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 PP4_RS25705 27d104cbe564bc8573fe99e63507d274 557 TIGRFAM TIGR01228 hutU: urocanate hydratase 11 554 0.0 T 22-04-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 PP4_RS25705 27d104cbe564bc8573fe99e63507d274 557 PIRSF PIRSF001423 2 557 1.5E-295 T 22-04-2016 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|UniPathway: UPA00379 PP4_RS25705 27d104cbe564bc8573fe99e63507d274 557 PANTHER PTHR12216 9 555 0.0 T 22-04-2016 PP4_RS25705 27d104cbe564bc8573fe99e63507d274 557 Gene3D G3DSA:3.40.50.10730 142 349 3.7E-97 T 22-04-2016 PP4_RS25705 27d104cbe564bc8573fe99e63507d274 557 PANTHER PTHR12216:SF3 9 555 0.0 T 22-04-2016 PP4_RS10585 a43e6b5f26d15da2c1258b1be427633e 316 SUPERFAMILY SSF52343 102 220 2.88E-27 T 22-04-2016 PP4_RS10585 a43e6b5f26d15da2c1258b1be427633e 316 PANTHER PTHR22924:SF20 1 272 1.4E-98 T 22-04-2016 PP4_RS10585 a43e6b5f26d15da2c1258b1be427633e 316 PRINTS PR00409 Phthalate dioxygenase reductase family signature 26 36 3.1E-58 T 22-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 PP4_RS10585 a43e6b5f26d15da2c1258b1be427633e 316 PRINTS PR00409 Phthalate dioxygenase reductase family signature 108 127 3.1E-58 T 22-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 PP4_RS10585 a43e6b5f26d15da2c1258b1be427633e 316 PRINTS PR00409 Phthalate dioxygenase reductase family signature 36 48 3.1E-58 T 22-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 PP4_RS10585 a43e6b5f26d15da2c1258b1be427633e 316 PRINTS PR00409 Phthalate dioxygenase reductase family signature 133 142 3.1E-58 T 22-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 PP4_RS10585 a43e6b5f26d15da2c1258b1be427633e 316 PRINTS PR00409 Phthalate dioxygenase reductase family signature 186 194 3.1E-58 T 22-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 PP4_RS10585 a43e6b5f26d15da2c1258b1be427633e 316 PRINTS PR00409 Phthalate dioxygenase reductase family signature 86 100 3.1E-58 T 22-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 PP4_RS10585 a43e6b5f26d15da2c1258b1be427633e 316 PRINTS PR00409 Phthalate dioxygenase reductase family signature 48 62 3.1E-58 T 22-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 PP4_RS10585 a43e6b5f26d15da2c1258b1be427633e 316 PRINTS PR00409 Phthalate dioxygenase reductase family signature 72 86 3.1E-58 T 22-04-2016 IPR000951 Phthalate dioxygenase reductase GO:0016491 PP4_RS10585 a43e6b5f26d15da2c1258b1be427633e 316 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 265 273 - T 22-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 PP4_RS10585 a43e6b5f26d15da2c1258b1be427633e 316 SUPERFAMILY SSF63380 2 96 2.08E-27 T 22-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 PP4_RS10585 a43e6b5f26d15da2c1258b1be427633e 316 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 238 305 1.0E-12 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS10585 a43e6b5f26d15da2c1258b1be427633e 316 Gene3D G3DSA:2.40.30.10 2 96 8.8E-35 T 22-04-2016 PP4_RS10585 a43e6b5f26d15da2c1258b1be427633e 316 PANTHER PTHR22924 1 272 1.4E-98 T 22-04-2016 PP4_RS10585 a43e6b5f26d15da2c1258b1be427633e 316 Gene3D G3DSA:3.10.20.30 214 314 1.1E-26 T 22-04-2016 IPR012675 Beta-grasp domain PP4_RS10585 a43e6b5f26d15da2c1258b1be427633e 316 Gene3D G3DSA:3.40.50.80 98 213 3.5E-25 T 22-04-2016 PP4_RS10585 a43e6b5f26d15da2c1258b1be427633e 316 SUPERFAMILY SSF54292 208 315 2.36E-28 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS17870 01c8c4658ede130abe02a0f9df389ffb 841 SUPERFAMILY SSF82866 608 808 4.58E-31 T 22-04-2016 PP4_RS17870 01c8c4658ede130abe02a0f9df389ffb 841 PANTHER PTHR33406:SF2 12 117 4.0E-84 T 22-04-2016 PP4_RS17870 01c8c4658ede130abe02a0f9df389ffb 841 PANTHER PTHR33406:SF2 152 802 4.0E-84 T 22-04-2016 PP4_RS17870 01c8c4658ede130abe02a0f9df389ffb 841 Pfam PF03176 MMPL family 609 805 9.6E-13 T 22-04-2016 IPR004869 Membrane transport protein, MMPL domain GO:0016020 PP4_RS17870 01c8c4658ede130abe02a0f9df389ffb 841 SUPERFAMILY SSF82866 264 414 2.09E-25 T 22-04-2016 PP4_RS17870 01c8c4658ede130abe02a0f9df389ffb 841 PANTHER PTHR33406 12 117 4.0E-84 T 22-04-2016 PP4_RS17870 01c8c4658ede130abe02a0f9df389ffb 841 PANTHER PTHR33406 152 802 4.0E-84 T 22-04-2016 PP4_RS17870 01c8c4658ede130abe02a0f9df389ffb 841 Gene3D G3DSA:1.20.1640.10 238 421 1.7E-25 T 22-04-2016 PP4_RS17870 01c8c4658ede130abe02a0f9df389ffb 841 Gene3D G3DSA:1.20.1640.10 651 808 8.2E-25 T 22-04-2016 PP4_RS12930 2320b4b73a65ce87f2aa1901ec306adc 379 PIRSF PIRSF006078 1 377 3.8E-134 T 22-04-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 PP4_RS12930 2320b4b73a65ce87f2aa1901ec306adc 379 Pfam PF02595 Glycerate kinase family 3 373 4.4E-146 T 22-04-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 PP4_RS12930 2320b4b73a65ce87f2aa1901ec306adc 379 PANTHER PTHR21599:SF0 1 378 1.7E-156 T 22-04-2016 PP4_RS12930 2320b4b73a65ce87f2aa1901ec306adc 379 Gene3D G3DSA:3.90.1510.10 42 275 7.7E-94 T 22-04-2016 IPR018193 Glycerate kinase, flavodoxin-like domain GO:0008887|GO:0031388 PP4_RS12930 2320b4b73a65ce87f2aa1901ec306adc 379 PANTHER PTHR21599 1 378 1.7E-156 T 22-04-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 PP4_RS12930 2320b4b73a65ce87f2aa1901ec306adc 379 TIGRFAM TIGR00045 TIGR00045: glycerate kinase 2 374 2.4E-150 T 22-04-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 PP4_RS12930 2320b4b73a65ce87f2aa1901ec306adc 379 SUPERFAMILY SSF110738 1 374 9.02E-136 T 22-04-2016 IPR004381 Glycerate kinase GO:0008887|GO:0031388 PP4_RS17460 093144f2b04d4e9db37fed8c8ff2999f 359 SUPERFAMILY SSF52151 48 110 3.98E-14 T 22-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 PP4_RS17460 093144f2b04d4e9db37fed8c8ff2999f 359 SUPERFAMILY SSF52151 160 323 3.98E-14 T 22-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 PP4_RS14495 aa311a5fe982586669d2929994abc6e0 397 PANTHER PTHR23517:SF4 1 396 8.4E-115 T 22-04-2016 PP4_RS14495 aa311a5fe982586669d2929994abc6e0 397 Gene3D G3DSA:1.20.1250.20 220 395 3.6E-17 T 22-04-2016 PP4_RS14495 aa311a5fe982586669d2929994abc6e0 397 Gene3D G3DSA:1.20.1250.20 19 198 1.4E-17 T 22-04-2016 PP4_RS14495 aa311a5fe982586669d2929994abc6e0 397 SUPERFAMILY SSF103473 19 395 1.27E-46 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS14495 aa311a5fe982586669d2929994abc6e0 397 Pfam PF07690 Major Facilitator Superfamily 23 251 8.1E-12 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS14495 aa311a5fe982586669d2929994abc6e0 397 PANTHER PTHR23517 1 396 8.4E-115 T 22-04-2016 PP4_RS27165 aee3d79e63ee47a90a999496f6665bf5 298 PIRSF PIRSF016020 5 297 5.3E-56 T 22-04-2016 IPR025532 Glucose-6-phosphate 1-epimerase KEGG: 00010+5.1.3.15 PP4_RS27165 aee3d79e63ee47a90a999496f6665bf5 298 Pfam PF01263 Aldose 1-epimerase 18 293 1.2E-53 T 22-04-2016 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase GO:0005975|GO:0016853 PP4_RS27165 aee3d79e63ee47a90a999496f6665bf5 298 PANTHER PTHR11122 6 293 1.8E-86 T 22-04-2016 PP4_RS27165 aee3d79e63ee47a90a999496f6665bf5 298 SUPERFAMILY SSF74650 8 293 7.53E-73 T 22-04-2016 IPR011013 Galactose mutarotase-like domain GO:0003824|GO:0005975|GO:0030246 PP4_RS27165 aee3d79e63ee47a90a999496f6665bf5 298 PANTHER PTHR11122:SF14 6 293 1.8E-86 T 22-04-2016 PP4_RS27165 aee3d79e63ee47a90a999496f6665bf5 298 Gene3D G3DSA:2.70.98.10 5 293 5.6E-86 T 22-04-2016 IPR014718 Glycoside hydrolase-type carbohydrate-binding, subgroup GO:0003824|GO:0005975|GO:0030246 PP4_RS24745 eca5ee11442c818b0dca42dd17d4f2e5 455 PANTHER PTHR34219:SF2 246 449 1.0E-177 T 22-04-2016 PP4_RS24745 eca5ee11442c818b0dca42dd17d4f2e5 455 PANTHER PTHR34219:SF2 3 222 1.0E-177 T 22-04-2016 PP4_RS24745 eca5ee11442c818b0dca42dd17d4f2e5 455 Pfam PF03413 Peptidase propeptide and YPEB domain 67 116 0.0044 T 22-04-2016 IPR025711 PepSY domain PP4_RS24745 eca5ee11442c818b0dca42dd17d4f2e5 455 Pfam PF03413 Peptidase propeptide and YPEB domain 285 341 3.3E-4 T 22-04-2016 IPR025711 PepSY domain PP4_RS24745 eca5ee11442c818b0dca42dd17d4f2e5 455 Pfam PF03929 PepSY-associated TM region 13 396 5.4E-64 T 22-04-2016 IPR005625 PepSY-associated TM protein PP4_RS24745 eca5ee11442c818b0dca42dd17d4f2e5 455 PANTHER PTHR34219 246 449 1.0E-177 T 22-04-2016 PP4_RS24745 eca5ee11442c818b0dca42dd17d4f2e5 455 PANTHER PTHR34219 3 222 1.0E-177 T 22-04-2016 PP4_RS11660 73d1b1d8a715cbb109ecd13025d9ec2e 302 PANTHER PTHR12737:SF21 1 298 3.8E-67 T 22-04-2016 PP4_RS11660 73d1b1d8a715cbb109ecd13025d9ec2e 302 Pfam PF02274 Amidinotransferase 1 292 2.0E-70 T 22-04-2016 PP4_RS11660 73d1b1d8a715cbb109ecd13025d9ec2e 302 Gene3D G3DSA:3.75.10.10 33 288 7.9E-16 T 22-04-2016 PP4_RS11660 73d1b1d8a715cbb109ecd13025d9ec2e 302 PIRSF PIRSF028188 1 296 4.6E-119 T 22-04-2016 IPR014541 Predicted amidinotransferase, FN0238 type PP4_RS11660 73d1b1d8a715cbb109ecd13025d9ec2e 302 PANTHER PTHR12737 1 298 3.8E-67 T 22-04-2016 IPR033199 Dimethylarginine dimethylaminohydrolase/arginine deiminase KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981|UniPathway: UPA00254 PP4_RS11660 73d1b1d8a715cbb109ecd13025d9ec2e 302 SUPERFAMILY SSF55909 1 293 9.6E-38 T 22-04-2016 PP4_RS10620 4cfabccf7a90a6b4e8ff7a98b5882f7e 214 PANTHER PTHR30328 15 209 1.2E-35 T 22-04-2016 PP4_RS10620 4cfabccf7a90a6b4e8ff7a98b5882f7e 214 SUPERFAMILY SSF48498 86 200 1.38E-16 T 22-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal PP4_RS10620 4cfabccf7a90a6b4e8ff7a98b5882f7e 214 Pfam PF13977 Bacterial transcriptional repressor 88 200 3.6E-26 T 22-04-2016 PP4_RS10620 4cfabccf7a90a6b4e8ff7a98b5882f7e 214 PANTHER PTHR30328:SF11 15 209 1.2E-35 T 22-04-2016 PP4_RS10620 4cfabccf7a90a6b4e8ff7a98b5882f7e 214 SUPERFAMILY SSF46689 7 86 9.48E-16 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS10620 4cfabccf7a90a6b4e8ff7a98b5882f7e 214 Gene3D G3DSA:1.10.357.10 12 203 6.5E-40 T 22-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PP4_RS10620 4cfabccf7a90a6b4e8ff7a98b5882f7e 214 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 65 1.1E-11 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS07520 c886706ab9473f1b25e2eff3259472bd 304 PIRSF PIRSF016660 1 301 1.1E-122 T 22-04-2016 IPR008526 Inner membrane protein YedI PP4_RS07520 c886706ab9473f1b25e2eff3259472bd 304 PANTHER PTHR30503 2 304 3.6E-101 T 22-04-2016 PP4_RS07520 c886706ab9473f1b25e2eff3259472bd 304 Pfam PF05661 Protein of unknown function (DUF808) 4 289 6.5E-116 T 22-04-2016 IPR008526 Inner membrane protein YedI PP4_RS02185 a7054c717dd08b26cc34338676cd60b1 110 Pfam PF00581 Rhodanese-like domain 9 98 9.9E-15 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS02185 a7054c717dd08b26cc34338676cd60b1 110 SMART SM00450 7 102 2.0E-21 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS02185 a7054c717dd08b26cc34338676cd60b1 110 Hamap MF_01009 Thiosulfate sulfurtransferase GlpE [glpE]. 2 106 31.379 T 22-04-2016 IPR023695 Thiosulfate sulfurtransferase, bacterial GO:0004792|GO:0005737 KEGG: 00920+2.8.1.1|MetaCyc: PWY-5350 PP4_RS02185 a7054c717dd08b26cc34338676cd60b1 110 SUPERFAMILY SSF52821 1 101 2.1E-27 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS02185 a7054c717dd08b26cc34338676cd60b1 110 Gene3D G3DSA:3.40.250.10 2 103 4.9E-28 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS21330 03c171599cc0fadc408f2e0e400d26e4 399 PANTHER PTHR24023:SF593 75 386 9.5E-28 T 22-04-2016 PP4_RS21330 03c171599cc0fadc408f2e0e400d26e4 399 PANTHER PTHR24023 75 386 9.5E-28 T 22-04-2016 PP4_RS21330 03c171599cc0fadc408f2e0e400d26e4 399 Gene3D G3DSA:3.40.50.10540 4 219 4.3E-109 T 22-04-2016 IPR023606 CoA-transferase family III domain PP4_RS21330 03c171599cc0fadc408f2e0e400d26e4 399 Gene3D G3DSA:3.40.50.10540 309 399 4.3E-109 T 22-04-2016 IPR023606 CoA-transferase family III domain PP4_RS21330 03c171599cc0fadc408f2e0e400d26e4 399 Pfam PF02515 CoA-transferase family III 8 376 2.4E-118 T 22-04-2016 IPR003673 CoA-transferase family III GO:0003824 PP4_RS21330 03c171599cc0fadc408f2e0e400d26e4 399 Gene3D G3DSA:3.30.1540.10 226 308 7.5E-22 T 22-04-2016 PP4_RS21330 03c171599cc0fadc408f2e0e400d26e4 399 SUPERFAMILY SSF89796 6 399 1.09E-132 T 22-04-2016 IPR023606 CoA-transferase family III domain PP4_RS16000 46224203ea867653a415fcf2f5e83bf6 297 PANTHER PTHR30425:SF0 12 294 1.3E-91 T 22-04-2016 PP4_RS16000 46224203ea867653a415fcf2f5e83bf6 297 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 28 294 3.7E-78 T 22-04-2016 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 PP4_RS16000 46224203ea867653a415fcf2f5e83bf6 297 SUPERFAMILY SSF161098 33 289 1.44E-35 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS16000 46224203ea867653a415fcf2f5e83bf6 297 PANTHER PTHR30425 12 294 1.3E-91 T 22-04-2016 PP4_RS16000 46224203ea867653a415fcf2f5e83bf6 297 Gene3D G3DSA:1.10.3720.10 27 292 1.8E-39 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS16000 46224203ea867653a415fcf2f5e83bf6 297 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 99 293 7.8E-18 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS15750 136846a6d8813faae58cc878eebba7e8 125 Gene3D G3DSA:2.40.50.100 4 123 3.0E-44 T 22-04-2016 PP4_RS15750 136846a6d8813faae58cc878eebba7e8 125 PANTHER PTHR11715 2 123 6.1E-59 T 22-04-2016 IPR002930 Glycine cleavage system H-protein PP4_RS15750 136846a6d8813faae58cc878eebba7e8 125 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 1 122 26.87 T 22-04-2016 IPR002930 Glycine cleavage system H-protein PP4_RS15750 136846a6d8813faae58cc878eebba7e8 125 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 3 123 6.2E-41 T 22-04-2016 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 PP4_RS15750 136846a6d8813faae58cc878eebba7e8 125 Pfam PF01597 Glycine cleavage H-protein 4 122 1.7E-38 T 22-04-2016 IPR002930 Glycine cleavage system H-protein PP4_RS15750 136846a6d8813faae58cc878eebba7e8 125 SUPERFAMILY SSF51230 2 122 1.44E-36 T 22-04-2016 IPR011053 Single hybrid motif PP4_RS03570 73a4b345dede3324fd5f118d01c23fe7 639 Pfam PF16591 Helical bimodular sensor domain 33 286 3.9E-90 T 22-04-2016 IPR032255 Helical bimodular sensor domain PP4_RS03570 73a4b345dede3324fd5f118d01c23fe7 639 SMART SM00283 377 638 3.9E-92 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS03570 73a4b345dede3324fd5f118d01c23fe7 639 SUPERFAMILY SSF58104 330 639 4.58E-80 T 22-04-2016 PP4_RS03570 73a4b345dede3324fd5f118d01c23fe7 639 SMART SM01358 33 288 1.0E-66 T 22-04-2016 IPR032255 Helical bimodular sensor domain PP4_RS03570 73a4b345dede3324fd5f118d01c23fe7 639 Gene3D G3DSA:1.10.287.950 392 610 3.4E-62 T 22-04-2016 PP4_RS03570 73a4b345dede3324fd5f118d01c23fe7 639 PANTHER PTHR32089 266 639 2.4E-133 T 22-04-2016 PP4_RS03570 73a4b345dede3324fd5f118d01c23fe7 639 PANTHER PTHR32089:SF34 266 639 2.4E-133 T 22-04-2016 PP4_RS03570 73a4b345dede3324fd5f118d01c23fe7 639 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 438 637 6.4E-53 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS03570 73a4b345dede3324fd5f118d01c23fe7 639 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 504 533 1.3E-21 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS03570 73a4b345dede3324fd5f118d01c23fe7 639 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 398 427 1.3E-21 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS03570 73a4b345dede3324fd5f118d01c23fe7 639 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 475 502 1.3E-21 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS03570 73a4b345dede3324fd5f118d01c23fe7 639 SMART SM00304 369 415 20.0 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS03570 73a4b345dede3324fd5f118d01c23fe7 639 SMART SM00304 310 362 1.2E-9 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS03570 73a4b345dede3324fd5f118d01c23fe7 639 Pfam PF00672 HAMP domain 291 359 1.5E-13 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS10855 e29b2787abae8d3e5aaeb8895526362b 234 SUPERFAMILY SSF55811 10 145 3.05E-20 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PP4_RS10855 e29b2787abae8d3e5aaeb8895526362b 234 Gene3D G3DSA:3.90.79.10 7 138 1.2E-25 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PP4_RS10855 e29b2787abae8d3e5aaeb8895526362b 234 Gene3D G3DSA:1.10.10.10 144 217 6.6E-10 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS10855 e29b2787abae8d3e5aaeb8895526362b 234 SUPERFAMILY SSF46785 151 218 5.67E-9 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS17740 59e7c6c2ef8171b08f8e148985f5890f 364 PANTHER PTHR24220:SF282 257 289 6.7E-112 T 22-04-2016 PP4_RS17740 59e7c6c2ef8171b08f8e148985f5890f 364 PANTHER PTHR24220:SF282 4 239 6.7E-112 T 22-04-2016 PP4_RS17740 59e7c6c2ef8171b08f8e148985f5890f 364 PANTHER PTHR24220:SF282 322 327 6.7E-112 T 22-04-2016 PP4_RS17740 59e7c6c2ef8171b08f8e148985f5890f 364 Gene3D G3DSA:3.40.50.300 3 232 7.5E-54 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS17740 59e7c6c2ef8171b08f8e148985f5890f 364 SMART SM00382 27 212 5.5E-4 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS17740 59e7c6c2ef8171b08f8e148985f5890f 364 SUPERFAMILY SSF52540 4 240 3.55E-61 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS17740 59e7c6c2ef8171b08f8e148985f5890f 364 Pfam PF00005 ABC transporter 21 160 3.3E-24 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS17740 59e7c6c2ef8171b08f8e148985f5890f 364 Gene3D G3DSA:2.40.50.140 277 338 3.4E-8 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS17740 59e7c6c2ef8171b08f8e148985f5890f 364 SUPERFAMILY SSF50331 236 353 7.05E-21 T 22-04-2016 IPR008995 Molybdate/tungstate binding, C-terminal PP4_RS17740 59e7c6c2ef8171b08f8e148985f5890f 364 PANTHER PTHR24220 257 289 6.7E-112 T 22-04-2016 PP4_RS17740 59e7c6c2ef8171b08f8e148985f5890f 364 PANTHER PTHR24220 4 239 6.7E-112 T 22-04-2016 PP4_RS17740 59e7c6c2ef8171b08f8e148985f5890f 364 PANTHER PTHR24220 322 327 6.7E-112 T 22-04-2016 PP4_RS16145 87d7f4d5ace9910a64f2ef79c3d13181 94 PANTHER PTHR11785 9 94 7.2E-23 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS16145 87d7f4d5ace9910a64f2ef79c3d13181 94 PANTHER PTHR11785:SF77 9 94 7.2E-23 T 22-04-2016 PP4_RS12840 0c668d661ed7c85ce943a8717b954074 318 SMART SM00342 228 314 2.1E-22 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS12840 0c668d661ed7c85ce943a8717b954074 318 Gene3D G3DSA:1.10.10.60 213 264 1.6E-13 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS12840 0c668d661ed7c85ce943a8717b954074 318 Gene3D G3DSA:1.10.10.60 265 312 1.3E-5 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS12840 0c668d661ed7c85ce943a8717b954074 318 ProSitePatterns PS00041 Bacterial regulatory proteins, araC family signature. 265 310 - T 22-04-2016 IPR018062 HTH domain AraC-type, conserved site GO:0003700|GO:0006355|GO:0043565 PP4_RS12840 0c668d661ed7c85ce943a8717b954074 318 Pfam PF14525 AraC-binding-like domain 23 194 4.4E-21 T 22-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PP4_RS12840 0c668d661ed7c85ce943a8717b954074 318 PANTHER PTHR11019 35 317 2.5E-43 T 22-04-2016 PP4_RS12840 0c668d661ed7c85ce943a8717b954074 318 PANTHER PTHR11019:SF54 35 317 2.5E-43 T 22-04-2016 PP4_RS12840 0c668d661ed7c85ce943a8717b954074 318 SUPERFAMILY SSF46689 214 263 1.39E-6 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS12840 0c668d661ed7c85ce943a8717b954074 318 Pfam PF12833 Helix-turn-helix domain 234 316 6.9E-24 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS08510 a1b01b706d2bbfe5fda5ae03bc49d635 220 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 46 65 1.1E-66 T 22-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 PP4_RS08510 a1b01b706d2bbfe5fda5ae03bc49d635 220 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 144 164 1.1E-66 T 22-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 PP4_RS08510 a1b01b706d2bbfe5fda5ae03bc49d635 220 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 165 186 1.1E-66 T 22-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 PP4_RS08510 a1b01b706d2bbfe5fda5ae03bc49d635 220 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 26 46 1.1E-66 T 22-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 PP4_RS08510 a1b01b706d2bbfe5fda5ae03bc49d635 220 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 189 214 1.1E-66 T 22-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 PP4_RS08510 a1b01b706d2bbfe5fda5ae03bc49d635 220 PRINTS PR01302 Type III secretion system inner membrane P protein family signature 7 26 1.1E-66 T 22-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 PP4_RS08510 a1b01b706d2bbfe5fda5ae03bc49d635 220 Pfam PF00813 FliP family 9 211 2.8E-62 T 22-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 PP4_RS08510 a1b01b706d2bbfe5fda5ae03bc49d635 220 ProSitePatterns PS01061 Flagella transport protein fliP family signature 2. 192 204 - T 22-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 PP4_RS08510 a1b01b706d2bbfe5fda5ae03bc49d635 220 PANTHER PTHR30587 2 217 6.3E-88 T 22-04-2016 PP4_RS08510 a1b01b706d2bbfe5fda5ae03bc49d635 220 ProSitePatterns PS01060 Flagella transport protein fliP family signature 1. 144 159 - T 22-04-2016 IPR005838 Type III secretion system inner membrane P protein GO:0009306|GO:0016020 PP4_RS08510 a1b01b706d2bbfe5fda5ae03bc49d635 220 TIGRFAM TIGR01102 yscR: type III secretion apparatus protein, YscR/HrcR family 6 211 8.7E-80 T 22-04-2016 IPR005773 Yop virulence translocation protein R GO:0015031|GO:0016021 PP4_RS26940 dd70d169b56ab7c37ec486f4163a5545 226 PANTHER PTHR30471:SF5 1 224 1.7E-114 T 22-04-2016 PP4_RS26940 dd70d169b56ab7c37ec486f4163a5545 226 ProSitePatterns PS01302 Uncharacterized protein family UPF0758 signature. 173 178 - T 22-04-2016 IPR020891 Uncharacterised protein family UPF0758, conserved site PP4_RS26940 dd70d169b56ab7c37ec486f4163a5545 226 PANTHER PTHR30471 1 224 1.7E-114 T 22-04-2016 PP4_RS26940 dd70d169b56ab7c37ec486f4163a5545 226 Gene3D G3DSA:3.40.140.10 102 224 1.4E-45 T 22-04-2016 PP4_RS26940 dd70d169b56ab7c37ec486f4163a5545 226 TIGRFAM TIGR00608 radc: DNA repair protein RadC 11 224 3.0E-66 T 22-04-2016 IPR001405 RadC protein PP4_RS26940 dd70d169b56ab7c37ec486f4163a5545 226 SUPERFAMILY SSF47781 17 90 1.72E-7 T 22-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 PP4_RS26940 dd70d169b56ab7c37ec486f4163a5545 226 Pfam PF04002 RadC-like JAB domain 105 222 8.4E-41 T 22-04-2016 IPR025657 RadC-like JAB domain PP4_RS23800 b44e5ea9180585c4fa36f3d51d53c33a 381 Hamap MF_01559 L-lactate dehydrogenase [lldD]. 1 380 72.957 T 22-04-2016 IPR020920 L-lactate dehydrogenase, bacterial GO:0004457|GO:0006089|GO:0010181|GO:0055114 PP4_RS23800 b44e5ea9180585c4fa36f3d51d53c33a 381 Pfam PF01070 FMN-dependent dehydrogenase 13 375 6.4E-126 T 22-04-2016 IPR000262 FMN-dependent dehydrogenase GO:0016491 PP4_RS23800 b44e5ea9180585c4fa36f3d51d53c33a 381 PANTHER PTHR10578:SF65 7 378 3.9E-163 T 22-04-2016 PP4_RS23800 b44e5ea9180585c4fa36f3d51d53c33a 381 PIRSF PIRSF000138 2 379 3.0E-122 T 22-04-2016 IPR012133 Alpha-hydroxy acid dehydrogenase, FMN-dependent GO:0010181|GO:0016491|GO:0055114 PP4_RS23800 b44e5ea9180585c4fa36f3d51d53c33a 381 Gene3D G3DSA:3.20.20.70 7 376 4.6E-135 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS23800 b44e5ea9180585c4fa36f3d51d53c33a 381 ProSitePatterns PS00557 FMN-dependent alpha-hydroxy acid dehydrogenases active site. 273 279 - T 22-04-2016 IPR008259 FMN-dependent alpha-hydroxy acid dehydrogenase, active site GO:0016491|GO:0055114 PP4_RS23800 b44e5ea9180585c4fa36f3d51d53c33a 381 PANTHER PTHR10578 7 378 3.9E-163 T 22-04-2016 PP4_RS23800 b44e5ea9180585c4fa36f3d51d53c33a 381 SUPERFAMILY SSF51395 7 376 4.15E-99 T 22-04-2016 PP4_RS07085 786e489fe44f9a7ac2aab39b4250b985 118 Gene3D G3DSA:3.30.160.170 27 114 3.6E-25 T 22-04-2016 IPR005186 FlaG protein PP4_RS07085 786e489fe44f9a7ac2aab39b4250b985 118 SUPERFAMILY SSF160214 26 118 2.22E-25 T 22-04-2016 IPR005186 FlaG protein PP4_RS07085 786e489fe44f9a7ac2aab39b4250b985 118 PANTHER PTHR37166:SF1 45 118 2.9E-22 T 22-04-2016 PP4_RS07085 786e489fe44f9a7ac2aab39b4250b985 118 PANTHER PTHR37166 45 118 2.9E-22 T 22-04-2016 PP4_RS07085 786e489fe44f9a7ac2aab39b4250b985 118 Pfam PF03646 FlaG protein 28 115 3.3E-24 T 22-04-2016 IPR005186 FlaG protein PP4_RS19935 ef323ea184e75cbf735f7eee345ffa12 186 PANTHER PTHR35562:SF2 1 186 9.2E-75 T 22-04-2016 PP4_RS19935 ef323ea184e75cbf735f7eee345ffa12 186 PANTHER PTHR35562 1 186 9.2E-75 T 22-04-2016 PP4_RS19935 ef323ea184e75cbf735f7eee345ffa12 186 SUPERFAMILY SSF160443 94 177 3.27E-16 T 22-04-2016 IPR002625 Smr domain PP4_RS19935 ef323ea184e75cbf735f7eee345ffa12 186 Pfam PF01713 Smr domain 96 177 2.1E-22 T 22-04-2016 IPR002625 Smr domain PP4_RS19935 ef323ea184e75cbf735f7eee345ffa12 186 SMART SM00463 93 177 1.2E-6 T 22-04-2016 IPR002625 Smr domain PP4_RS05010 3a02d394e68e0de16d67a1c003fd70e2 227 SUPERFAMILY SSF57863 84 148 2.88E-9 T 22-04-2016 PP4_RS05010 3a02d394e68e0de16d67a1c003fd70e2 227 Pfam PF11967 Recombination protein O N terminal 7 71 1.5E-13 T 22-04-2016 IPR022572 DNA replication/recombination mediator RecO, N-terminal PP4_RS05010 3a02d394e68e0de16d67a1c003fd70e2 227 SUPERFAMILY SSF50249 4 72 1.64E-10 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS05010 3a02d394e68e0de16d67a1c003fd70e2 227 TIGRFAM TIGR00613 reco: DNA repair protein RecO 11 147 7.8E-19 T 22-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 PP4_RS05010 3a02d394e68e0de16d67a1c003fd70e2 227 Pfam PF02565 Recombination protein O C terminal 81 222 4.9E-24 T 22-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 PP4_RS05010 3a02d394e68e0de16d67a1c003fd70e2 227 Hamap MF_00201 DNA repair protein RecO [recO]. 3 227 18.179 T 22-04-2016 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 PP4_RS05010 3a02d394e68e0de16d67a1c003fd70e2 227 PANTHER PTHR33991 3 227 7.0E-43 T 22-04-2016 PP4_RS05010 3a02d394e68e0de16d67a1c003fd70e2 227 Gene3D G3DSA:2.40.50.140 9 69 1.6E-5 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS15580 3e055336a0d260d1521e6f767260f7d8 521 Pfam PF00884 Sulfatase 30 358 9.7E-62 T 22-04-2016 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 PP4_RS15580 3e055336a0d260d1521e6f767260f7d8 521 Gene3D G3DSA:3.30.1120.10 388 463 2.3E-10 T 22-04-2016 PP4_RS15580 3e055336a0d260d1521e6f767260f7d8 521 PANTHER PTHR10342:SF241 3 505 2.6E-150 T 22-04-2016 PP4_RS15580 3e055336a0d260d1521e6f767260f7d8 521 SUPERFAMILY SSF53649 26 472 5.1E-123 T 22-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 PP4_RS15580 3e055336a0d260d1521e6f767260f7d8 521 PANTHER PTHR10342 3 505 2.6E-150 T 22-04-2016 PP4_RS15580 3e055336a0d260d1521e6f767260f7d8 521 Gene3D G3DSA:3.40.720.10 27 387 1.2E-96 T 22-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 PP4_RS26065 c25f292d2c50a1e1007d2457cb079b66 237 Pfam PF00912 Transglycosylase 54 218 1.1E-47 T 22-04-2016 IPR001264 Glycosyl transferase, family 51 UniPathway: UPA00219 PP4_RS26065 c25f292d2c50a1e1007d2457cb079b66 237 SUPERFAMILY SSF53955 52 222 5.34E-58 T 22-04-2016 IPR023346 Lysozyme-like domain PP4_RS26065 c25f292d2c50a1e1007d2457cb079b66 237 Hamap MF_00766 Monofunctional biosynthetic peptidoglycan transglycosylase [mtgA]. 1 224 44.528 T 22-04-2016 IPR011812 Monofunctional biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 UniPathway: UPA00219 PP4_RS26065 c25f292d2c50a1e1007d2457cb079b66 237 TIGRFAM TIGR02070 mono_pep_trsgly: monofunctional biosynthetic peptidoglycan transglycosylase 5 222 1.5E-98 T 22-04-2016 IPR011812 Monofunctional biosynthetic peptidoglycan transglycosylase GO:0009252|GO:0009274|GO:0016021|GO:0016763 UniPathway: UPA00219 PP4_RS26065 c25f292d2c50a1e1007d2457cb079b66 237 PANTHER PTHR30400 5 227 1.8E-109 T 22-04-2016 PP4_RS26065 c25f292d2c50a1e1007d2457cb079b66 237 PANTHER PTHR30400:SF0 5 227 1.8E-109 T 22-04-2016 PP4_RS26065 c25f292d2c50a1e1007d2457cb079b66 237 Gene3D G3DSA:1.10.3810.10 51 222 1.0E-56 T 22-04-2016 PP4_RS04890 87f52695024c616e78343ff7b36d117a 493 Pfam PF02743 Cache domain 70 281 3.8E-12 T 22-04-2016 IPR033479 Double Cache domain 1 PP4_RS04890 87f52695024c616e78343ff7b36d117a 493 SUPERFAMILY SSF55073 334 487 4.55E-51 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS04890 87f52695024c616e78343ff7b36d117a 493 Gene3D G3DSA:3.30.70.270 331 488 1.1E-56 T 22-04-2016 PP4_RS04890 87f52695024c616e78343ff7b36d117a 493 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 326 487 2.3E-51 T 22-04-2016 IPR000160 GGDEF domain PP4_RS04890 87f52695024c616e78343ff7b36d117a 493 Gene3D G3DSA:3.30.450.20 165 282 9.5E-5 T 22-04-2016 PP4_RS04890 87f52695024c616e78343ff7b36d117a 493 SMART SM00267 318 489 1.4E-67 T 22-04-2016 IPR000160 GGDEF domain PP4_RS04890 87f52695024c616e78343ff7b36d117a 493 PANTHER PTHR10799:SF750 284 486 3.1E-33 T 22-04-2016 PP4_RS04890 87f52695024c616e78343ff7b36d117a 493 Pfam PF00990 Diguanylate cyclase, GGDEF domain 329 485 5.9E-50 T 22-04-2016 IPR000160 GGDEF domain PP4_RS04890 87f52695024c616e78343ff7b36d117a 493 PANTHER PTHR10799 284 486 3.1E-33 T 22-04-2016 PP4_RS17655 7a57eadb6be8db41698da493bc207b52 798 SUPERFAMILY SSF54211 590 765 3.6E-57 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PP4_RS17655 7a57eadb6be8db41698da493bc207b52 798 Gene3D G3DSA:3.30.230.10 585 766 7.6E-75 T 22-04-2016 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup PP4_RS17655 7a57eadb6be8db41698da493bc207b52 798 Gene3D G3DSA:3.40.50.300 304 496 8.5E-34 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS17655 7a57eadb6be8db41698da493bc207b52 798 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 348 484 2.4E-19 T 22-04-2016 IPR003959 ATPase, AAA-type, core GO:0005524 PP4_RS17655 7a57eadb6be8db41698da493bc207b52 798 Gene3D G3DSA:1.10.8.60 497 579 6.2E-32 T 22-04-2016 PP4_RS17655 7a57eadb6be8db41698da493bc207b52 798 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 352 371 4.8E-54 T 22-04-2016 PP4_RS17655 7a57eadb6be8db41698da493bc207b52 798 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 590 606 4.8E-54 T 22-04-2016 PP4_RS17655 7a57eadb6be8db41698da493bc207b52 798 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 668 687 4.8E-54 T 22-04-2016 PP4_RS17655 7a57eadb6be8db41698da493bc207b52 798 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 698 717 4.8E-54 T 22-04-2016 PP4_RS17655 7a57eadb6be8db41698da493bc207b52 798 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 721 739 4.8E-54 T 22-04-2016 PP4_RS17655 7a57eadb6be8db41698da493bc207b52 798 Hamap MF_01973 Lon protease [lon]. 7 767 70.842 T 22-04-2016 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 PP4_RS17655 7a57eadb6be8db41698da493bc207b52 798 PANTHER PTHR10046 6 771 0.0 T 22-04-2016 IPR027065 Lon protease GO:0004176|GO:0004252|GO:0005524|GO:0030163 PP4_RS17655 7a57eadb6be8db41698da493bc207b52 798 SMART SM00382 344 488 4.7E-12 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS17655 7a57eadb6be8db41698da493bc207b52 798 SMART SM00464 6 198 1.0E-73 T 22-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 PP4_RS17655 7a57eadb6be8db41698da493bc207b52 798 PANTHER PTHR10046:SF43 6 771 0.0 T 22-04-2016 PP4_RS17655 7a57eadb6be8db41698da493bc207b52 798 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 7 197 1.9E-43 T 22-04-2016 IPR003111 ATP-dependent protease La (LON), substrate-binding domain GO:0004176|GO:0006508 PP4_RS17655 7a57eadb6be8db41698da493bc207b52 798 SUPERFAMILY SSF88697 6 197 8.95E-49 T 22-04-2016 IPR015947 PUA-like domain PP4_RS17655 7a57eadb6be8db41698da493bc207b52 798 SUPERFAMILY SSF52540 308 581 2.7E-51 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS17655 7a57eadb6be8db41698da493bc207b52 798 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 565 767 2.3E-97 T 22-04-2016 IPR008269 Peptidase S16, Lon C-terminal GO:0004176|GO:0004252|GO:0006508 PP4_RS17655 7a57eadb6be8db41698da493bc207b52 798 PIRSF PIRSF001174 1 770 0.0 T 22-04-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 PP4_RS17655 7a57eadb6be8db41698da493bc207b52 798 TIGRFAM TIGR00763 lon: endopeptidase La 8 766 4.2E-299 T 22-04-2016 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 PP4_RS19030 4a14787a5264a99ba5581ff19febb6b2 504 SUPERFAMILY SSF103473 475 500 6.28E-59 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS19030 4a14787a5264a99ba5581ff19febb6b2 504 SUPERFAMILY SSF103473 4 196 6.28E-59 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS19030 4a14787a5264a99ba5581ff19febb6b2 504 SUPERFAMILY SSF103473 251 422 6.28E-59 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS19030 4a14787a5264a99ba5581ff19febb6b2 504 Gene3D G3DSA:1.20.1250.20 10 195 8.3E-26 T 22-04-2016 PP4_RS19030 4a14787a5264a99ba5581ff19febb6b2 504 PANTHER PTHR23501:SF51 1 503 2.1E-235 T 22-04-2016 PP4_RS19030 4a14787a5264a99ba5581ff19febb6b2 504 Pfam PF07690 Major Facilitator Superfamily 19 412 9.4E-43 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS19030 4a14787a5264a99ba5581ff19febb6b2 504 PANTHER PTHR23501 1 503 2.1E-235 T 22-04-2016 PP4_RS19030 4a14787a5264a99ba5581ff19febb6b2 504 Gene3D G3DSA:1.20.1250.20 476 499 2.1E-18 T 22-04-2016 PP4_RS19030 4a14787a5264a99ba5581ff19febb6b2 504 Gene3D G3DSA:1.20.1250.20 269 422 2.1E-18 T 22-04-2016 PP4_RS19030 4a14787a5264a99ba5581ff19febb6b2 504 TIGRFAM TIGR00711 efflux_EmrB: drug resistance MFS transporter, drug:H+ antiporter-2 (14 Spanner) (DHA2) family 19 493 3.1E-109 T 22-04-2016 IPR004638 Drug resistance transporter EmrB/QacA subfamily GO:0006810|GO:0016021 PP4_RS07200 8eb0b18af7d1aefadd54256c34c00202 264 SUPERFAMILY SSF160527 152 234 2.75E-6 T 22-04-2016 PP4_RS07200 8eb0b18af7d1aefadd54256c34c00202 264 PANTHER PTHR34982 41 248 2.4E-64 T 22-04-2016 PP4_RS07200 8eb0b18af7d1aefadd54256c34c00202 264 PANTHER PTHR34982:SF2 41 248 2.4E-64 T 22-04-2016 PP4_RS07200 8eb0b18af7d1aefadd54256c34c00202 264 Pfam PF02108 Flagellar assembly protein FliH 104 225 7.2E-37 T 22-04-2016 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE PP4_RS00540 90ebad6540e5ece7f612699106a4fca1 260 PANTHER PTHR30477 3 260 1.5E-83 T 22-04-2016 PP4_RS00540 90ebad6540e5ece7f612699106a4fca1 260 Gene3D G3DSA:1.10.3470.10 41 253 1.7E-7 T 22-04-2016 IPR029022 ABC transporter, BtuC-like PP4_RS00540 90ebad6540e5ece7f612699106a4fca1 260 PANTHER PTHR30477:SF0 3 260 1.5E-83 T 22-04-2016 PP4_RS00540 90ebad6540e5ece7f612699106a4fca1 260 Pfam PF00950 ABC 3 transport family 2 256 1.0E-74 T 22-04-2016 IPR001626 ABC-3 GO:0005524|GO:0006810|GO:0016020|GO:0042626 PP4_RS00540 90ebad6540e5ece7f612699106a4fca1 260 SUPERFAMILY SSF81345 3 255 2.62E-38 T 22-04-2016 IPR029022 ABC transporter, BtuC-like PP4_RS24145 37d823f0b79943242413eb1044c457ee 465 Pfam PF00589 Phage integrase family 204 351 1.1E-12 T 22-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 PP4_RS24145 37d823f0b79943242413eb1044c457ee 465 Gene3D G3DSA:1.10.443.10 196 397 6.0E-23 T 22-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 PP4_RS24145 37d823f0b79943242413eb1044c457ee 465 SUPERFAMILY SSF56349 198 399 1.25E-20 T 22-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 PP4_RS03875 1d0a48c21e4058d2ba16c886ff7c0601 412 PRINTS PR00811 Bacterial general secretion pathway protein D signature 204 228 7.5E-9 T 22-04-2016 IPR001775 GspD/PilQ family PP4_RS03875 1d0a48c21e4058d2ba16c886ff7c0601 412 PRINTS PR00811 Bacterial general secretion pathway protein D signature 334 352 7.5E-9 T 22-04-2016 IPR001775 GspD/PilQ family PP4_RS03875 1d0a48c21e4058d2ba16c886ff7c0601 412 PRINTS PR00811 Bacterial general secretion pathway protein D signature 357 371 7.5E-9 T 22-04-2016 IPR001775 GspD/PilQ family PP4_RS03875 1d0a48c21e4058d2ba16c886ff7c0601 412 PANTHER PTHR30332 40 407 8.6E-84 T 22-04-2016 PP4_RS03875 1d0a48c21e4058d2ba16c886ff7c0601 412 Pfam PF13629 Pilus formation protein N terminal region 37 105 2.6E-15 T 22-04-2016 IPR032789 Pilus formation protein, N-terminal PP4_RS03875 1d0a48c21e4058d2ba16c886ff7c0601 412 PANTHER PTHR30332:SF1 40 407 8.6E-84 T 22-04-2016 PP4_RS03875 1d0a48c21e4058d2ba16c886ff7c0601 412 Pfam PF00263 Bacterial type II and III secretion system protein 208 370 6.2E-43 T 22-04-2016 IPR004846 Type II/III secretion system GO:0009306 PP4_RS13410 bd1a126419997b125df6c00dfe6a3f7a 456 SUPERFAMILY SSF103473 19 429 5.36E-61 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS13410 bd1a126419997b125df6c00dfe6a3f7a 456 Pfam PF00083 Sugar (and other) transporter 28 216 2.0E-22 T 22-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 PP4_RS13410 bd1a126419997b125df6c00dfe6a3f7a 456 PANTHER PTHR23508 18 448 6.1E-205 T 22-04-2016 PP4_RS13410 bd1a126419997b125df6c00dfe6a3f7a 456 Gene3D G3DSA:1.20.1250.20 241 429 4.2E-18 T 22-04-2016 PP4_RS13410 bd1a126419997b125df6c00dfe6a3f7a 456 Gene3D G3DSA:1.20.1250.20 23 230 1.2E-21 T 22-04-2016 PP4_RS13410 bd1a126419997b125df6c00dfe6a3f7a 456 PANTHER PTHR23508:SF12 18 448 6.1E-205 T 22-04-2016 PP4_RS13410 bd1a126419997b125df6c00dfe6a3f7a 456 ProSitePatterns PS00217 Sugar transport proteins signature 2. 134 159 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PP4_RS13410 bd1a126419997b125df6c00dfe6a3f7a 456 Pfam PF07690 Major Facilitator Superfamily 275 424 4.2E-9 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS17650 24aa291dcfebba82fd0f4da8be2dea10 90 PANTHER PTHR33175 1 90 3.2E-44 T 22-04-2016 PP4_RS17650 24aa291dcfebba82fd0f4da8be2dea10 90 Pfam PF00216 Bacterial DNA-binding protein 1 90 1.8E-33 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PP4_RS17650 24aa291dcfebba82fd0f4da8be2dea10 90 ProSitePatterns PS00045 Bacterial histone-like DNA-binding proteins signature. 46 65 - T 22-04-2016 IPR020816 Histone-like DNA-binding protein, conserved site GO:0003677 PP4_RS17650 24aa291dcfebba82fd0f4da8be2dea10 90 Gene3D G3DSA:4.10.520.10 1 90 2.4E-37 T 22-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 PP4_RS17650 24aa291dcfebba82fd0f4da8be2dea10 90 SMART SM00411 1 90 5.4E-43 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PP4_RS17650 24aa291dcfebba82fd0f4da8be2dea10 90 SUPERFAMILY SSF47729 1 90 3.09E-32 T 22-04-2016 IPR010992 Integration host factor (IHF)-like DNA-binding domain GO:0003677 PP4_RS17650 24aa291dcfebba82fd0f4da8be2dea10 90 PRINTS PR01727 Prokaryotic integration host factor signature 74 88 2.8E-19 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PP4_RS17650 24aa291dcfebba82fd0f4da8be2dea10 90 PRINTS PR01727 Prokaryotic integration host factor signature 58 71 2.8E-19 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PP4_RS17650 24aa291dcfebba82fd0f4da8be2dea10 90 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 2.8E-19 T 22-04-2016 IPR000119 Histone-like DNA-binding protein GO:0003677 PP4_RS19590 9ddedd711374f4266f11ee75e035b00a 737 SUPERFAMILY SSF56281 488 714 5.77E-45 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS19590 9ddedd711374f4266f11ee75e035b00a 737 SMART SM00849 500 681 1.5E-14 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS19590 9ddedd711374f4266f11ee75e035b00a 737 Pfam PF13567 Domain of unknown function (DUF4131) 9 166 3.2E-22 T 22-04-2016 IPR025405 Domain of unknown function DUF4131 PP4_RS19590 9ddedd711374f4266f11ee75e035b00a 737 Pfam PF03772 Competence protein 198 464 1.3E-56 T 22-04-2016 IPR004477 ComEC/Rec2-related protein PP4_RS19590 9ddedd711374f4266f11ee75e035b00a 737 PANTHER PTHR30619:SF2 1 728 1.1E-178 T 22-04-2016 PP4_RS19590 9ddedd711374f4266f11ee75e035b00a 737 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 219 397 2.0E-23 T 22-04-2016 IPR004477 ComEC/Rec2-related protein PP4_RS19590 9ddedd711374f4266f11ee75e035b00a 737 PANTHER PTHR30619 1 728 1.1E-178 T 22-04-2016 PP4_RS19590 9ddedd711374f4266f11ee75e035b00a 737 Gene3D G3DSA:3.60.15.10 491 720 8.1E-30 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS19590 9ddedd711374f4266f11ee75e035b00a 737 TIGRFAM TIGR00361 ComEC_Rec2: DNA internalization-related competence protein ComEC/Rec2 109 710 1.9E-103 T 22-04-2016 IPR004797 Competence protein ComEC/Rec2 GO:0016021|GO:0030420 PP4_RS19590 9ddedd711374f4266f11ee75e035b00a 737 Pfam PF00753 Metallo-beta-lactamase superfamily 497 673 3.5E-14 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS26455 4aa09ec82f67b28111298923c2ab6899 306 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 105 292 8.5E-10 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS26455 4aa09ec82f67b28111298923c2ab6899 306 PANTHER PTHR30193:SF5 5 305 1.6E-134 T 22-04-2016 PP4_RS26455 4aa09ec82f67b28111298923c2ab6899 306 Gene3D G3DSA:1.10.3720.10 15 296 4.4E-53 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS26455 4aa09ec82f67b28111298923c2ab6899 306 SUPERFAMILY SSF161098 17 296 3.27E-54 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS26455 4aa09ec82f67b28111298923c2ab6899 306 PANTHER PTHR30193 5 305 1.6E-134 T 22-04-2016 PP4_RS23905 24a4798b64118663cf2b534c04462694 451 SUPERFAMILY SSF51604 145 421 6.9E-84 T 22-04-2016 IPR029065 Enolase C-terminal domain-like PP4_RS23905 24a4798b64118663cf2b534c04462694 451 SMART SM00922 191 291 7.6E-16 T 22-04-2016 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal PP4_RS23905 24a4798b64118663cf2b534c04462694 451 Gene3D G3DSA:3.30.390.10 16 124 3.7E-10 T 22-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 PP4_RS23905 24a4798b64118663cf2b534c04462694 451 SUPERFAMILY SSF54826 13 143 2.02E-33 T 22-04-2016 IPR029017 Enolase N-terminal domain-like KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 PP4_RS23905 24a4798b64118663cf2b534c04462694 451 PANTHER PTHR13794:SF47 179 436 8.0E-284 T 22-04-2016 PP4_RS23905 24a4798b64118663cf2b534c04462694 451 PANTHER PTHR13794:SF47 13 158 8.0E-284 T 22-04-2016 PP4_RS23905 24a4798b64118663cf2b534c04462694 451 Pfam PF13378 Enolase C-terminal domain-like 196 410 7.6E-37 T 22-04-2016 IPR029065 Enolase C-terminal domain-like PP4_RS23905 24a4798b64118663cf2b534c04462694 451 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 47 143 2.6E-5 T 22-04-2016 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain PP4_RS23905 24a4798b64118663cf2b534c04462694 451 TIGRFAM TIGR03247 glucar-dehydr: glucarate dehydratase 12 451 3.5E-265 T 22-04-2016 IPR017653 Glucarate dehydratase GO:0000287|GO:0008872|GO:0019394 KEGG: 00053+4.2.1.40|MetaCyc: PWY-6499|UniPathway: UPA00564 PP4_RS23905 24a4798b64118663cf2b534c04462694 451 PANTHER PTHR13794 179 436 8.0E-284 T 22-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 PP4_RS23905 24a4798b64118663cf2b534c04462694 451 PANTHER PTHR13794 13 158 8.0E-284 T 22-04-2016 IPR001354 Mandelate racemase/muconate lactonizing enzyme/methylaspartate ammonia-lyase GO:0003824|GO:0008152 PP4_RS23905 24a4798b64118663cf2b534c04462694 451 Gene3D G3DSA:3.20.20.120 125 403 1.3E-102 T 22-04-2016 IPR029065 Enolase C-terminal domain-like PP4_RS20000 3d2986f399f48a9a59dae3d55ec8eea6 380 Gene3D G3DSA:3.40.50.2000 212 371 1.2E-64 T 22-04-2016 PP4_RS20000 3d2986f399f48a9a59dae3d55ec8eea6 380 Gene3D G3DSA:3.40.50.2000 3 211 4.6E-84 T 22-04-2016 PP4_RS20000 3d2986f399f48a9a59dae3d55ec8eea6 380 SUPERFAMILY SSF53756 3 371 2.39E-135 T 22-04-2016 PP4_RS20000 3d2986f399f48a9a59dae3d55ec8eea6 380 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 25 370 2.7E-122 T 22-04-2016 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain PP4_RS20000 3d2986f399f48a9a59dae3d55ec8eea6 380 PANTHER PTHR18964:SF2 2 378 4.0E-200 T 22-04-2016 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 KEGG: 00520+5.1.3.14|MetaCyc: PWY-7335 PP4_RS20000 3d2986f399f48a9a59dae3d55ec8eea6 380 PANTHER PTHR18964 2 378 4.0E-200 T 22-04-2016 PP4_RS20000 3d2986f399f48a9a59dae3d55ec8eea6 380 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 3 371 1.9E-160 T 22-04-2016 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 KEGG: 00520+5.1.3.14|MetaCyc: PWY-7335 PP4_RS01910 801eaba9c5d5bd075fa17cc267855e88 250 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 23 223 8.9E-54 T 22-04-2016 IPR010440 Lipopolysaccharide kinase GO:0005524|GO:0016020|GO:0016773 PP4_RS01910 801eaba9c5d5bd075fa17cc267855e88 250 SUPERFAMILY SSF56112 34 207 1.5E-10 T 22-04-2016 IPR011009 Protein kinase-like domain PP4_RS01910 801eaba9c5d5bd075fa17cc267855e88 250 PIRSF PIRSF026326 4 235 8.7E-67 T 22-04-2016 IPR027023 Putative lipopolysaccharide kinase InaA PP4_RS20640 acc4e9666a6c5a8713e6db4891d3b620 330 TIGRFAM TIGR01140 L_thr_O3P_dcar: threonine-phosphate decarboxylase 4 323 1.4E-110 T 22-04-2016 IPR005860 L-threonine-O-3-phosphate decarboxylase GO:0003824|GO:0009236 KEGG: 00860+4.1.1.81|MetaCyc: PWY-5443|UniPathway: UPA00148 PP4_RS20640 acc4e9666a6c5a8713e6db4891d3b620 330 PANTHER PTHR11751:SF3 4 329 4.6E-50 T 22-04-2016 PP4_RS20640 acc4e9666a6c5a8713e6db4891d3b620 330 Pfam PF00155 Aminotransferase class I and II 53 297 5.0E-23 T 22-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PP4_RS20640 acc4e9666a6c5a8713e6db4891d3b620 330 SUPERFAMILY SSF53383 3 324 6.41E-54 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS20640 acc4e9666a6c5a8713e6db4891d3b620 330 PANTHER PTHR11751 4 329 4.6E-50 T 22-04-2016 PP4_RS20640 acc4e9666a6c5a8713e6db4891d3b620 330 Gene3D G3DSA:3.40.640.10 42 237 1.3E-44 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS11395 3f5ac816c8c702617d962df07ff5b5c2 695 PANTHER PTHR33121:SF13 318 691 2.3E-86 T 22-04-2016 PP4_RS11395 3f5ac816c8c702617d962df07ff5b5c2 695 Pfam PF00990 Diguanylate cyclase, GGDEF domain 263 418 3.4E-46 T 22-04-2016 IPR000160 GGDEF domain PP4_RS11395 3f5ac816c8c702617d962df07ff5b5c2 695 SMART SM00267 252 423 1.1E-58 T 22-04-2016 IPR000160 GGDEF domain PP4_RS11395 3f5ac816c8c702617d962df07ff5b5c2 695 Pfam PF00563 EAL domain 439 674 4.4E-73 T 22-04-2016 IPR001633 EAL domain PP4_RS11395 3f5ac816c8c702617d962df07ff5b5c2 695 SMART SM00052 433 679 7.1E-120 T 22-04-2016 IPR001633 EAL domain PP4_RS11395 3f5ac816c8c702617d962df07ff5b5c2 695 SUPERFAMILY SSF55073 268 424 1.96E-48 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS11395 3f5ac816c8c702617d962df07ff5b5c2 695 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 260 421 2.9E-41 T 22-04-2016 IPR000160 GGDEF domain PP4_RS11395 3f5ac816c8c702617d962df07ff5b5c2 695 PANTHER PTHR33121 318 691 2.3E-86 T 22-04-2016 PP4_RS11395 3f5ac816c8c702617d962df07ff5b5c2 695 Gene3D G3DSA:3.30.70.270 265 431 5.2E-57 T 22-04-2016 PP4_RS11395 3f5ac816c8c702617d962df07ff5b5c2 695 Pfam PF03707 Bacterial signalling protein N terminal repeat 52 102 5.7E-20 T 22-04-2016 IPR005330 MHYT domain PP4_RS11395 3f5ac816c8c702617d962df07ff5b5c2 695 Pfam PF03707 Bacterial signalling protein N terminal repeat 115 167 2.6E-17 T 22-04-2016 IPR005330 MHYT domain PP4_RS11395 3f5ac816c8c702617d962df07ff5b5c2 695 Pfam PF03707 Bacterial signalling protein N terminal repeat 182 246 1.4E-12 T 22-04-2016 IPR005330 MHYT domain PP4_RS11395 3f5ac816c8c702617d962df07ff5b5c2 695 Gene3D G3DSA:3.20.20.450 436 684 3.0E-100 T 22-04-2016 IPR001633 EAL domain PP4_RS11395 3f5ac816c8c702617d962df07ff5b5c2 695 SUPERFAMILY SSF141868 439 686 1.44E-90 T 22-04-2016 IPR001633 EAL domain PP4_RS03590 c9ee14fcbe0e1204d121b208ce1940a4 144 Gene3D G3DSA:2.60.120.10 58 130 1.1E-11 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS03590 c9ee14fcbe0e1204d121b208ce1940a4 144 SUPERFAMILY SSF51182 26 131 1.95E-14 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS03590 c9ee14fcbe0e1204d121b208ce1940a4 144 Pfam PF07883 Cupin domain 65 127 1.6E-7 T 22-04-2016 IPR013096 Cupin 2, conserved barrel PP4_RS17150 66a7bdd10392d0119772fa198a30bb23 162 PANTHER PTHR33452:SF7 12 161 2.7E-70 T 22-04-2016 PP4_RS17150 66a7bdd10392d0119772fa198a30bb23 162 Pfam PF07681 DoxX 21 105 7.7E-23 T 22-04-2016 IPR032808 DoxX family PP4_RS17150 66a7bdd10392d0119772fa198a30bb23 162 PANTHER PTHR33452 12 161 2.7E-70 T 22-04-2016 PP4_RS24625 c4fa4cc5f9e6acbe41ff79707920124e 292 PANTHER PTHR18895 16 292 5.2E-146 T 22-04-2016 PP4_RS24625 c4fa4cc5f9e6acbe41ff79707920124e 292 TIGRFAM TIGR00406 prmA: ribosomal protein L11 methyltransferase 3 285 9.5E-91 T 22-04-2016 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 PP4_RS24625 c4fa4cc5f9e6acbe41ff79707920124e 292 SUPERFAMILY SSF53335 63 289 3.85E-40 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS24625 c4fa4cc5f9e6acbe41ff79707920124e 292 PANTHER PTHR18895:SF69 16 292 5.2E-146 T 22-04-2016 PP4_RS24625 c4fa4cc5f9e6acbe41ff79707920124e 292 PIRSF PIRSF000401 1 292 2.6E-89 T 22-04-2016 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 PP4_RS24625 c4fa4cc5f9e6acbe41ff79707920124e 292 Gene3D G3DSA:3.40.50.150 97 285 7.7E-40 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS24625 c4fa4cc5f9e6acbe41ff79707920124e 292 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 3 291 2.2E-97 T 22-04-2016 PP4_RS24625 c4fa4cc5f9e6acbe41ff79707920124e 292 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 3 291 33.899 T 22-04-2016 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 PP4_RS03855 d2c7aca0b41cb2beb55d0e44a85faf0f 295 PANTHER PTHR35007 1 294 4.8E-36 T 22-04-2016 PP4_RS03855 d2c7aca0b41cb2beb55d0e44a85faf0f 295 PANTHER PTHR35007:SF2 1 294 4.8E-36 T 22-04-2016 PP4_RS03855 d2c7aca0b41cb2beb55d0e44a85faf0f 295 Pfam PF00482 Type II secretion system (T2SS), protein F 156 281 2.0E-13 T 22-04-2016 IPR018076 Type II secretion system F domain PP4_RS26040 178aa14f1630c30740e0657a52949a8d 108 Pfam PF11872 Protein of unknown function (DUF3392) 4 107 1.4E-32 T 22-04-2016 IPR021813 Protein of unknown function DUF3392 PP4_RS23845 043eab8dbdf9e2f3758cf234a5c64da4 219 PANTHER PTHR30614 7 219 2.6E-64 T 22-04-2016 PP4_RS23845 043eab8dbdf9e2f3758cf234a5c64da4 219 Gene3D G3DSA:1.10.3720.10 11 216 1.4E-38 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS23845 043eab8dbdf9e2f3758cf234a5c64da4 219 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 214 4.4E-17 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS23845 043eab8dbdf9e2f3758cf234a5c64da4 219 SUPERFAMILY SSF161098 13 200 4.19E-38 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS23845 043eab8dbdf9e2f3758cf234a5c64da4 219 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 109 1.9E-24 T 22-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PP4_RS16775 1e598fc7b2458b62d87326a7304453b1 98 Pfam PF01817 Chorismate mutase type II 12 88 1.9E-17 T 22-04-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 PP4_RS16775 1e598fc7b2458b62d87326a7304453b1 98 Gene3D G3DSA:1.20.59.10 5 88 4.9E-17 T 22-04-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 PP4_RS16775 1e598fc7b2458b62d87326a7304453b1 98 SMART SM00830 12 91 4.5E-24 T 22-04-2016 IPR002701 Chorismate mutase GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 PP4_RS16775 1e598fc7b2458b62d87326a7304453b1 98 PANTHER PTHR38041 4 93 1.0E-12 T 22-04-2016 PP4_RS16775 1e598fc7b2458b62d87326a7304453b1 98 SUPERFAMILY SSF48600 5 90 7.48E-23 T 22-04-2016 IPR020822 Chorismate mutase, type II GO:0046417 KEGG: 00400+5.4.99.5|MetaCyc: PWY-3461|MetaCyc: PWY-3462|MetaCyc: PWY-6120|MetaCyc: PWY-6627|MetaCyc: PWY-7626|UniPathway: UPA00120 PP4_RS20315 51bc857ed18dc96a601e218694f492ce 159 Pfam PF04449 CS1 type fimbrial major subunit 24 154 7.7E-19 T 22-04-2016 IPR007540 Fimbrial major subunit, CS1-type GO:0009289 PP4_RS10980 bacd14035c4ca19ef9fd095c261533b0 197 Gene3D G3DSA:2.60.120.10 103 195 1.6E-22 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS10980 bacd14035c4ca19ef9fd095c261533b0 197 SUPERFAMILY SSF47413 13 80 3.22E-15 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS10980 bacd14035c4ca19ef9fd095c261533b0 197 PANTHER PTHR10245 10 194 1.8E-25 T 22-04-2016 PP4_RS10980 bacd14035c4ca19ef9fd095c261533b0 197 Pfam PF07883 Cupin domain 130 191 3.1E-11 T 22-04-2016 IPR013096 Cupin 2, conserved barrel PP4_RS10980 bacd14035c4ca19ef9fd095c261533b0 197 SUPERFAMILY SSF51182 79 192 1.66E-23 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS10980 bacd14035c4ca19ef9fd095c261533b0 197 PANTHER PTHR10245:SF9 10 194 1.8E-25 T 22-04-2016 PP4_RS10980 bacd14035c4ca19ef9fd095c261533b0 197 Gene3D G3DSA:1.10.260.40 12 80 7.7E-18 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS10980 bacd14035c4ca19ef9fd095c261533b0 197 SMART SM00530 18 73 4.1E-13 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS10980 bacd14035c4ca19ef9fd095c261533b0 197 Pfam PF01381 Helix-turn-helix 19 73 9.0E-12 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS25715 42867ada00ce2bb3a33f23b7fa843a76 248 SMART SM00866 104 241 1.5E-38 T 22-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 PP4_RS25715 42867ada00ce2bb3a33f23b7fa843a76 248 SUPERFAMILY SSF64288 71 246 3.3E-46 T 22-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain PP4_RS25715 42867ada00ce2bb3a33f23b7fa843a76 248 Gene3D G3DSA:1.10.10.10 16 89 7.3E-26 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS25715 42867ada00ce2bb3a33f23b7fa843a76 248 Gene3D G3DSA:3.40.1410.10 101 237 2.4E-56 T 22-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain PP4_RS25715 42867ada00ce2bb3a33f23b7fa843a76 248 PANTHER PTHR11751 17 107 7.1E-49 T 22-04-2016 PP4_RS25715 42867ada00ce2bb3a33f23b7fa843a76 248 SMART SM00345 24 83 1.4E-19 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS25715 42867ada00ce2bb3a33f23b7fa843a76 248 TIGRFAM TIGR02018 his_ut_repres: histidine utilization repressor 19 247 1.1E-109 T 22-04-2016 IPR010248 Histidine utilization repressor GO:0003677|GO:0006547|GO:0045892 UniPathway: UPA00379 PP4_RS25715 42867ada00ce2bb3a33f23b7fa843a76 248 PANTHER PTHR11751:SF364 17 107 7.1E-49 T 22-04-2016 PP4_RS25715 42867ada00ce2bb3a33f23b7fa843a76 248 SUPERFAMILY SSF46785 17 87 1.33E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS25715 42867ada00ce2bb3a33f23b7fa843a76 248 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 57 73 1.3E-8 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS25715 42867ada00ce2bb3a33f23b7fa843a76 248 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 43 57 1.3E-8 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS25715 42867ada00ce2bb3a33f23b7fa843a76 248 Pfam PF07702 UTRA domain 104 241 6.4E-39 T 22-04-2016 IPR011663 UbiC transcription regulator-associated GO:0003677|GO:0006355 PP4_RS25715 42867ada00ce2bb3a33f23b7fa843a76 248 Pfam PF00392 Bacterial regulatory proteins, gntR family 20 83 4.3E-20 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS03420 be009e4024369f257778942366a8cbfa 497 Pfam PF00171 Aldehyde dehydrogenase family 16 477 8.4E-139 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PP4_RS03420 be009e4024369f257778942366a8cbfa 497 PANTHER PTHR11699:SF188 1 483 0.0 T 22-04-2016 PP4_RS03420 be009e4024369f257778942366a8cbfa 497 SUPERFAMILY SSF53720 3 483 5.89E-147 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS03420 be009e4024369f257778942366a8cbfa 497 Gene3D G3DSA:3.40.309.10 260 442 4.1E-65 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PP4_RS03420 be009e4024369f257778942366a8cbfa 497 TIGRFAM TIGR01722 MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 4 481 1.3E-209 T 22-04-2016 IPR010061 Methylmalonate-semialdehyde dehydrogenase GO:0004491|GO:0055114 KEGG: 00280+1.2.1.27|KEGG: 00410+1.2.1.18|KEGG: 00562+1.2.1.18|KEGG: 00640+1.2.1.18+1.2.1.27|MetaCyc: PWY-5642|MetaCyc: PWY-6373 PP4_RS03420 be009e4024369f257778942366a8cbfa 497 PANTHER PTHR11699 1 483 0.0 T 22-04-2016 PP4_RS03420 be009e4024369f257778942366a8cbfa 497 Gene3D G3DSA:3.40.605.10 4 259 1.3E-88 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS03420 be009e4024369f257778942366a8cbfa 497 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 273 284 - T 22-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 PP4_RS03335 7c77a7978617924da37ada288c5a6515 283 PANTHER PTHR13078 1 283 6.1E-86 T 22-04-2016 PP4_RS03335 7c77a7978617924da37ada288c5a6515 283 SUPERFAMILY SSF54637 168 269 8.53E-21 T 22-04-2016 IPR029069 HotDog domain PP4_RS03335 7c77a7978617924da37ada288c5a6515 283 Gene3D G3DSA:3.10.129.10 172 268 4.5E-24 T 22-04-2016 IPR029069 HotDog domain PP4_RS03335 7c77a7978617924da37ada288c5a6515 283 PANTHER PTHR13078:SF54 1 283 6.1E-86 T 22-04-2016 PP4_RS03335 7c77a7978617924da37ada288c5a6515 283 Pfam PF01575 MaoC like domain 185 260 6.7E-15 T 22-04-2016 IPR002539 MaoC-like domain PP4_RS15735 1f7ecd3da8ace7977a070d4759c3f316 330 SUPERFAMILY SSF102114 57 320 1.96E-68 T 22-04-2016 PP4_RS15735 1f7ecd3da8ace7977a070d4759c3f316 330 Pfam PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family 43 79 1.0E-6 T 22-04-2016 IPR031691 Lipoyl synthase, N-terminal KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 PP4_RS15735 1f7ecd3da8ace7977a070d4759c3f316 330 PANTHER PTHR10949 19 320 4.2E-166 T 22-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 PP4_RS15735 1f7ecd3da8ace7977a070d4759c3f316 330 SMART SM00729 90 296 3.4E-17 T 22-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 PP4_RS15735 1f7ecd3da8ace7977a070d4759c3f316 330 TIGRFAM TIGR00510 lipA: lipoyl synthase 38 320 1.1E-126 T 22-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 PP4_RS15735 1f7ecd3da8ace7977a070d4759c3f316 330 Hamap MF_00206 Lipoyl synthase [lipA]. 1 330 151.247 T 22-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 PP4_RS15735 1f7ecd3da8ace7977a070d4759c3f316 330 PIRSF PIRSF005963 5 328 2.0E-127 T 22-04-2016 IPR003698 Lipoyl synthase GO:0009107|GO:0016992|GO:0051539 KEGG: 00785+2.8.1.8|MetaCyc: PWY-6987|MetaCyc: PWY-7382|UniPathway: UPA00538 PP4_RS15735 1f7ecd3da8ace7977a070d4759c3f316 330 Pfam PF04055 Radical SAM superfamily 97 256 9.7E-16 T 22-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 PP4_RS15735 1f7ecd3da8ace7977a070d4759c3f316 330 Gene3D G3DSA:3.20.20.70 58 325 6.5E-71 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS11515 a186351a14821075557047f24de3ff9c 203 Pfam PF07486 Cell Wall Hydrolase 89 195 1.7E-23 T 22-04-2016 IPR011105 Cell wall hydrolase, SleB GO:0016787 PP4_RS25395 b318e99d8bc8d4502754a0747ee0efb2 277 Pfam PF00892 EamA-like transporter family 146 275 4.0E-8 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS25395 b318e99d8bc8d4502754a0747ee0efb2 277 SUPERFAMILY SSF103481 38 133 2.62E-13 T 22-04-2016 PP4_RS25395 b318e99d8bc8d4502754a0747ee0efb2 277 PANTHER PTHR22911:SF61 6 277 6.7E-92 T 22-04-2016 PP4_RS25395 b318e99d8bc8d4502754a0747ee0efb2 277 PANTHER PTHR22911 6 277 6.7E-92 T 22-04-2016 PP4_RS25395 b318e99d8bc8d4502754a0747ee0efb2 277 SUPERFAMILY SSF103481 185 276 1.24E-11 T 22-04-2016 PP4_RS25875 4749caab910642dd3936464f085a0e94 102 Pfam PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system 21 94 7.6E-29 T 22-04-2016 IPR018669 Toxin-antitoxin system, toxin component, HigB, putative GO:0016788 PP4_RS21005 5a3cf3fd183743ddaf130897bb9ced40 787 TIGRFAM TIGR03303 OM_YaeT: outer membrane protein assembly complex, YaeT protein 23 787 1.3E-263 T 22-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 PP4_RS21005 5a3cf3fd183743ddaf130897bb9ced40 787 Hamap MF_01430 Outer membrane protein assembly factor BamA [bamA]. 1 787 25.599 T 22-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 PP4_RS21005 5a3cf3fd183743ddaf130897bb9ced40 787 Pfam PF01103 Surface antigen 447 787 1.0E-94 T 22-04-2016 IPR000184 Bacterial surface antigen (D15) GO:0019867 PP4_RS21005 5a3cf3fd183743ddaf130897bb9ced40 787 PANTHER PTHR12815:SF11 5 663 2.1E-259 T 22-04-2016 PP4_RS21005 5a3cf3fd183743ddaf130897bb9ced40 787 PANTHER PTHR12815:SF11 685 787 2.1E-259 T 22-04-2016 PP4_RS21005 5a3cf3fd183743ddaf130897bb9ced40 787 PANTHER PTHR12815 5 663 2.1E-259 T 22-04-2016 PP4_RS21005 5a3cf3fd183743ddaf130897bb9ced40 787 PANTHER PTHR12815 685 787 2.1E-259 T 22-04-2016 PP4_RS21005 5a3cf3fd183743ddaf130897bb9ced40 787 Pfam PF07244 Surface antigen variable number repeat 92 171 1.2E-13 T 22-04-2016 IPR010827 Surface antigen variable number GO:0019867 PP4_RS21005 5a3cf3fd183743ddaf130897bb9ced40 787 Pfam PF07244 Surface antigen variable number repeat 175 262 2.6E-17 T 22-04-2016 IPR010827 Surface antigen variable number GO:0019867 PP4_RS21005 5a3cf3fd183743ddaf130897bb9ced40 787 Pfam PF07244 Surface antigen variable number repeat 265 343 1.6E-13 T 22-04-2016 IPR010827 Surface antigen variable number GO:0019867 PP4_RS21005 5a3cf3fd183743ddaf130897bb9ced40 787 Pfam PF07244 Surface antigen variable number repeat 347 420 4.5E-14 T 22-04-2016 IPR010827 Surface antigen variable number GO:0019867 PP4_RS21005 5a3cf3fd183743ddaf130897bb9ced40 787 Gene3D G3DSA:2.40.160.50 404 787 7.9E-26 T 22-04-2016 PP4_RS21005 5a3cf3fd183743ddaf130897bb9ced40 787 PIRSF PIRSF006076 1 787 2.9E-266 T 22-04-2016 IPR023707 Outer membrane protein assembly factor BamA GO:0071709 PP4_RS12715 654d9a30f7f18b31d32ea15517aefd65 400 PANTHER PTHR12526 77 396 3.4E-94 T 22-04-2016 PP4_RS12715 654d9a30f7f18b31d32ea15517aefd65 400 PANTHER PTHR12526 1 39 3.4E-94 T 22-04-2016 PP4_RS12715 654d9a30f7f18b31d32ea15517aefd65 400 Gene3D G3DSA:3.40.50.2000 219 377 1.3E-30 T 22-04-2016 PP4_RS12715 654d9a30f7f18b31d32ea15517aefd65 400 Pfam PF00534 Glycosyl transferases group 1 223 378 1.6E-34 T 22-04-2016 IPR001296 Glycosyl transferase, family 1 PP4_RS12715 654d9a30f7f18b31d32ea15517aefd65 400 PANTHER PTHR12526:SF375 77 396 3.4E-94 T 22-04-2016 PP4_RS12715 654d9a30f7f18b31d32ea15517aefd65 400 PANTHER PTHR12526:SF375 1 39 3.4E-94 T 22-04-2016 PP4_RS12715 654d9a30f7f18b31d32ea15517aefd65 400 SUPERFAMILY SSF53756 18 396 1.45E-67 T 22-04-2016 PP4_RS26210 4fbf2510040c53aa55093a4ef8e2b0f3 317 PANTHER PTHR33055:SF3 7 308 8.7E-33 T 22-04-2016 PP4_RS26210 4fbf2510040c53aa55093a4ef8e2b0f3 317 Pfam PF02371 Transposase IS116/IS110/IS902 family 194 267 2.3E-17 T 22-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PP4_RS26210 4fbf2510040c53aa55093a4ef8e2b0f3 317 Pfam PF01548 Transposase 10 148 1.1E-20 T 22-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 PP4_RS26210 4fbf2510040c53aa55093a4ef8e2b0f3 317 PANTHER PTHR33055 7 308 8.7E-33 T 22-04-2016 PP4_RS03100 e28e4b8c794ef7d29639b88530fcaf91 406 Gene3D G3DSA:3.40.50.2000 203 371 4.0E-17 T 22-04-2016 PP4_RS03100 e28e4b8c794ef7d29639b88530fcaf91 406 PANTHER PTHR12526 205 375 7.2E-22 T 22-04-2016 PP4_RS03100 e28e4b8c794ef7d29639b88530fcaf91 406 SUPERFAMILY SSF53756 85 375 3.92E-34 T 22-04-2016 PP4_RS03100 e28e4b8c794ef7d29639b88530fcaf91 406 Pfam PF13692 Glycosyl transferases group 1 220 357 2.0E-14 T 22-04-2016 PP4_RS26340 84d2d4b1cc8f92ae18df00e4d4cd5a5f 188 SMART SM01266 6 60 1.3E-17 T 22-04-2016 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 PP4_RS26340 84d2d4b1cc8f92ae18df00e4d4cd5a5f 188 Pfam PF12464 Maltose acetyltransferase 8 59 1.8E-13 T 22-04-2016 IPR024688 Maltose/galactoside acetyltransferase GO:0016407 PP4_RS26340 84d2d4b1cc8f92ae18df00e4d4cd5a5f 188 Gene3D G3DSA:2.160.10.10 4 181 1.4E-64 T 22-04-2016 PP4_RS26340 84d2d4b1cc8f92ae18df00e4d4cd5a5f 188 PANTHER PTHR23416:SF58 4 181 7.0E-84 T 22-04-2016 PP4_RS26340 84d2d4b1cc8f92ae18df00e4d4cd5a5f 188 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 131 166 4.6E-11 T 22-04-2016 IPR001451 Hexapeptide repeat PP4_RS26340 84d2d4b1cc8f92ae18df00e4d4cd5a5f 188 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 75 111 5.7E-4 T 22-04-2016 IPR001451 Hexapeptide repeat PP4_RS26340 84d2d4b1cc8f92ae18df00e4d4cd5a5f 188 PANTHER PTHR23416 4 181 7.0E-84 T 22-04-2016 PP4_RS26340 84d2d4b1cc8f92ae18df00e4d4cd5a5f 188 SUPERFAMILY SSF51161 5 183 6.24E-57 T 22-04-2016 IPR011004 Trimeric LpxA-like PP4_RS26340 84d2d4b1cc8f92ae18df00e4d4cd5a5f 188 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 140 168 - T 22-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 PP4_RS11185 27c364ad83d77320581d2e017960e403 213 PIRSF PIRSF006324 1 210 2.5E-60 T 22-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PP4_RS11185 27c364ad83d77320581d2e017960e403 213 PANTHER PTHR30086 1 213 3.1E-43 T 22-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PP4_RS11185 27c364ad83d77320581d2e017960e403 213 Pfam PF01810 LysE type translocator 15 208 2.6E-29 T 22-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PP4_RS11945 ad3c816cdcdbda8ad8a8144417b92801 86 Pfam PF10976 Protein of unknown function (DUF2790) 14 84 1.4E-23 T 22-04-2016 IPR021245 Protein of unknown function DUF2790 PP4_RS09480 893b99af6ad327815a24edacb1d539a5 215 Gene3D G3DSA:1.10.10.10 8 94 7.3E-35 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS09480 893b99af6ad327815a24edacb1d539a5 215 Gene3D G3DSA:1.10.10.10 97 171 1.8E-29 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS09480 893b99af6ad327815a24edacb1d539a5 215 PANTHER PTHR38768:SF1 1 214 3.3E-73 T 22-04-2016 PP4_RS09480 893b99af6ad327815a24edacb1d539a5 215 SUPERFAMILY SSF46785 12 89 3.54E-27 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS09480 893b99af6ad327815a24edacb1d539a5 215 SUPERFAMILY SSF46785 92 171 6.07E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS09480 893b99af6ad327815a24edacb1d539a5 215 PANTHER PTHR38768 1 214 3.3E-73 T 22-04-2016 PP4_RS09480 893b99af6ad327815a24edacb1d539a5 215 Pfam PF04337 Protein of unknown function, DUF480 13 156 9.0E-54 T 22-04-2016 IPR007432 Protein of unknown function DUF480 PP4_RS09480 893b99af6ad327815a24edacb1d539a5 215 Hamap MF_01584 UPF0502 protein YceH [yceH]. 12 215 28.096 T 22-04-2016 IPR007432 Protein of unknown function DUF480 PP4_RS21420 77a71a3cc92b16a8c5a1b835c69e189f 432 PANTHER PTHR23508 1 432 6.7E-208 T 22-04-2016 PP4_RS21420 77a71a3cc92b16a8c5a1b835c69e189f 432 PANTHER PTHR23508:SF16 1 432 6.7E-208 T 22-04-2016 PP4_RS21420 77a71a3cc92b16a8c5a1b835c69e189f 432 ProSitePatterns PS00216 Sugar transport proteins signature 1. 301 318 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PP4_RS21420 77a71a3cc92b16a8c5a1b835c69e189f 432 SUPERFAMILY SSF103473 18 430 1.83E-63 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS21420 77a71a3cc92b16a8c5a1b835c69e189f 432 Pfam PF00083 Sugar (and other) transporter 22 232 7.5E-25 T 22-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 PP4_RS21420 77a71a3cc92b16a8c5a1b835c69e189f 432 TIGRFAM TIGR00883 2A0106: MFS transporter, metabolite:H+ symporter (MHS) family protein 27 418 1.5E-134 T 22-04-2016 IPR004736 Citrate-proton symport GO:0005215|GO:0006810|GO:0016021 PP4_RS21420 77a71a3cc92b16a8c5a1b835c69e189f 432 Pfam PF07690 Major Facilitator Superfamily 284 423 8.0E-12 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS21420 77a71a3cc92b16a8c5a1b835c69e189f 432 Gene3D G3DSA:1.20.1250.20 23 221 2.0E-20 T 22-04-2016 PP4_RS21420 77a71a3cc92b16a8c5a1b835c69e189f 432 Gene3D G3DSA:1.20.1250.20 248 429 3.4E-18 T 22-04-2016 PP4_RS00080 e95ec23275b39cbefa0eb6e567ed9550 565 Gene3D G3DSA:3.40.720.10 258 544 2.7E-18 T 22-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 PP4_RS00080 e95ec23275b39cbefa0eb6e567ed9550 565 Pfam PF08019 Domain of unknown function (DUF1705) 75 224 4.2E-49 T 22-04-2016 IPR012549 Domain of unknown function DUF1705 GO:0016021 PP4_RS00080 e95ec23275b39cbefa0eb6e567ed9550 565 PANTHER PTHR30443 17 554 3.6E-221 T 22-04-2016 PP4_RS00080 e95ec23275b39cbefa0eb6e567ed9550 565 PANTHER PTHR30443:SF0 17 554 3.6E-221 T 22-04-2016 PP4_RS00080 e95ec23275b39cbefa0eb6e567ed9550 565 Pfam PF00884 Sulfatase 252 538 2.2E-50 T 22-04-2016 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 PP4_RS00080 e95ec23275b39cbefa0eb6e567ed9550 565 SUPERFAMILY SSF53649 248 544 2.62E-19 T 22-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 PP4_RS13295 12f8baeffb0e1ba6bbb7a8a8ecef4160 341 PANTHER PTHR10366:SF469 2 264 2.7E-98 T 22-04-2016 PP4_RS13295 12f8baeffb0e1ba6bbb7a8a8ecef4160 341 PANTHER PTHR10366:SF469 281 333 2.7E-98 T 22-04-2016 PP4_RS13295 12f8baeffb0e1ba6bbb7a8a8ecef4160 341 TIGRFAM TIGR02197 heptose_epim: ADP-glyceromanno-heptose 6-epimerase 3 327 1.8E-131 T 22-04-2016 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20|UniPathway: UPA00356 PP4_RS13295 12f8baeffb0e1ba6bbb7a8a8ecef4160 341 PANTHER PTHR10366 2 264 2.7E-98 T 22-04-2016 PP4_RS13295 12f8baeffb0e1ba6bbb7a8a8ecef4160 341 PANTHER PTHR10366 281 333 2.7E-98 T 22-04-2016 PP4_RS13295 12f8baeffb0e1ba6bbb7a8a8ecef4160 341 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 241 2.8E-41 T 22-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 PP4_RS13295 12f8baeffb0e1ba6bbb7a8a8ecef4160 341 Hamap MF_01601 ADP-L-glycero-D-manno-heptose-6-epimerase [hldD]. 2 329 55.881 T 22-04-2016 IPR011912 ADP-L-glycero-D-manno-heptose-6-epimerase GO:0005975|GO:0008712|GO:0050661 KEGG: 00540+5.1.3.20|UniPathway: UPA00356 PP4_RS13295 12f8baeffb0e1ba6bbb7a8a8ecef4160 341 Gene3D G3DSA:3.90.25.10 171 309 2.1E-27 T 22-04-2016 PP4_RS13295 12f8baeffb0e1ba6bbb7a8a8ecef4160 341 Gene3D G3DSA:3.40.50.720 1 170 5.9E-24 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS13295 12f8baeffb0e1ba6bbb7a8a8ecef4160 341 SUPERFAMILY SSF51735 1 327 5.72E-57 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS07110 39660e7a79a4d2045d2d02d7519a38b3 256 Pfam PF00483 Nucleotidyl transferase 2 201 2.1E-17 T 22-04-2016 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Reactome: REACT_17015 PP4_RS07110 39660e7a79a4d2045d2d02d7519a38b3 256 Gene3D G3DSA:3.90.550.10 1 254 8.1E-64 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS07110 39660e7a79a4d2045d2d02d7519a38b3 256 PANTHER PTHR22572:SF16 2 256 1.4E-168 T 22-04-2016 IPR013446 Glucose-1-phosphate cytidylyltransferase GO:0047343 KEGG: 00500+2.7.7.33|KEGG: 00520+2.7.7.33|MetaCyc: PWY-5833|MetaCyc: PWY-5940|UniPathway: UPA00055|UniPathway: UPA00281 PP4_RS07110 39660e7a79a4d2045d2d02d7519a38b3 256 SUPERFAMILY SSF53448 1 255 3.03E-68 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS07110 39660e7a79a4d2045d2d02d7519a38b3 256 PANTHER PTHR22572 2 256 1.4E-168 T 22-04-2016 PP4_RS07110 39660e7a79a4d2045d2d02d7519a38b3 256 TIGRFAM TIGR02623 G1P_cyt_trans: glucose-1-phosphate cytidylyltransferase 1 255 5.8E-143 T 22-04-2016 IPR013446 Glucose-1-phosphate cytidylyltransferase GO:0047343 KEGG: 00500+2.7.7.33|KEGG: 00520+2.7.7.33|MetaCyc: PWY-5833|MetaCyc: PWY-5940|UniPathway: UPA00055|UniPathway: UPA00281 PP4_RS05240 c0cb9cc2ba4f01aa4ede39fdd5353d27 319 PRINTS PR01021 OMPA domain signature 179 201 3.0E-5 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PP4_RS05240 c0cb9cc2ba4f01aa4ede39fdd5353d27 319 PRINTS PR01021 OMPA domain signature 225 241 3.0E-5 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PP4_RS05240 c0cb9cc2ba4f01aa4ede39fdd5353d27 319 PRINTS PR01021 OMPA domain signature 210 225 3.0E-5 T 22-04-2016 IPR006664 Outer membrane protein, bacterial GO:0009279|GO:0016021 PP4_RS05240 c0cb9cc2ba4f01aa4ede39fdd5353d27 319 Gene3D G3DSA:3.30.1330.60 174 280 7.8E-29 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS05240 c0cb9cc2ba4f01aa4ede39fdd5353d27 319 SUPERFAMILY SSF103088 150 279 1.96E-29 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS05240 c0cb9cc2ba4f01aa4ede39fdd5353d27 319 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 225 242 1.5E-17 T 22-04-2016 PP4_RS05240 c0cb9cc2ba4f01aa4ede39fdd5353d27 319 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 196 222 1.5E-17 T 22-04-2016 PP4_RS05240 c0cb9cc2ba4f01aa4ede39fdd5353d27 319 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 263 283 1.5E-17 T 22-04-2016 PP4_RS05240 c0cb9cc2ba4f01aa4ede39fdd5353d27 319 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 39 57 1.5E-17 T 22-04-2016 PP4_RS05240 c0cb9cc2ba4f01aa4ede39fdd5353d27 319 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 77 95 1.5E-17 T 22-04-2016 PP4_RS05240 c0cb9cc2ba4f01aa4ede39fdd5353d27 319 PRINTS PR01023 Sodium-type flagellar protein MotY precursor signature 243 262 1.5E-17 T 22-04-2016 PP4_RS05240 c0cb9cc2ba4f01aa4ede39fdd5353d27 319 Pfam PF00691 OmpA family 179 274 1.4E-18 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS05240 c0cb9cc2ba4f01aa4ede39fdd5353d27 319 PANTHER PTHR30128 164 286 6.2E-27 T 22-04-2016 PP4_RS05880 5100f068b9a8e1286ec938a5f6893071 591 Gene3D G3DSA:3.30.1360.30 279 416 5.2E-45 T 22-04-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 PP4_RS05880 5100f068b9a8e1286ec938a5f6893071 591 Pfam PF01336 OB-fold nucleic acid binding domain 19 94 4.2E-18 T 22-04-2016 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 PP4_RS05880 5100f068b9a8e1286ec938a5f6893071 591 Hamap MF_00044 Aspartate--tRNA(Asp) ligase [aspS]. 2 564 37.804 T 22-04-2016 PP4_RS05880 5100f068b9a8e1286ec938a5f6893071 591 Gene3D G3DSA:3.30.930.10 134 278 3.5E-115 T 22-04-2016 PP4_RS05880 5100f068b9a8e1286ec938a5f6893071 591 Gene3D G3DSA:3.30.930.10 417 586 3.5E-115 T 22-04-2016 PP4_RS05880 5100f068b9a8e1286ec938a5f6893071 591 SUPERFAMILY SSF55681 427 586 2.79E-105 T 22-04-2016 PP4_RS05880 5100f068b9a8e1286ec938a5f6893071 591 SUPERFAMILY SSF55681 115 294 2.79E-105 T 22-04-2016 PP4_RS05880 5100f068b9a8e1286ec938a5f6893071 591 PANTHER PTHR22594 373 572 4.1E-250 T 22-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS05880 5100f068b9a8e1286ec938a5f6893071 591 PANTHER PTHR22594 1 299 4.1E-250 T 22-04-2016 IPR018150 Aminoacyl-tRNA synthetase, class II (D/K/N)-like GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS05880 5100f068b9a8e1286ec938a5f6893071 591 Gene3D G3DSA:2.40.50.140 1 109 4.7E-41 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS05880 5100f068b9a8e1286ec938a5f6893071 591 Pfam PF02938 GAD domain 310 409 2.8E-27 T 22-04-2016 IPR029351 GAD domain PP4_RS05880 5100f068b9a8e1286ec938a5f6893071 591 Pfam PF00152 tRNA synthetases class II (D, K and N) 121 559 1.5E-111 T 22-04-2016 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS05880 5100f068b9a8e1286ec938a5f6893071 591 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 1 583 1.2E-246 T 22-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 PP4_RS05880 5100f068b9a8e1286ec938a5f6893071 591 PANTHER PTHR22594:SF5 373 572 4.1E-250 T 22-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 PP4_RS05880 5100f068b9a8e1286ec938a5f6893071 591 PANTHER PTHR22594:SF5 1 299 4.1E-250 T 22-04-2016 IPR004524 Aspartate-tRNA ligase, bacterial/mitochondrial-type GO:0005524|GO:0016874 PP4_RS05880 5100f068b9a8e1286ec938a5f6893071 591 SUPERFAMILY SSF55261 291 422 3.27E-43 T 22-04-2016 IPR004115 GAD-like domain GO:0004812|GO:0005524|GO:0005737 PP4_RS05880 5100f068b9a8e1286ec938a5f6893071 591 SUPERFAMILY SSF50249 2 106 1.24E-34 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS05880 5100f068b9a8e1286ec938a5f6893071 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 475 491 1.2E-26 T 22-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS05880 5100f068b9a8e1286ec938a5f6893071 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 210 223 1.2E-26 T 22-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS05880 5100f068b9a8e1286ec938a5f6893071 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 519 533 1.2E-26 T 22-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS05880 5100f068b9a8e1286ec938a5f6893071 591 PRINTS PR01042 Aspartyl-tRNA synthetase signature 193 205 1.2E-26 T 22-04-2016 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS05520 d457378b37b0724be322a1c097fa130a 948 SUPERFAMILY SSF52540 123 349 5.32E-32 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS05520 d457378b37b0724be322a1c097fa130a 948 PANTHER PTHR10799:SF610 150 352 9.6E-277 T 22-04-2016 PP4_RS05520 d457378b37b0724be322a1c097fa130a 948 PANTHER PTHR10799:SF610 874 948 9.6E-277 T 22-04-2016 PP4_RS05520 d457378b37b0724be322a1c097fa130a 948 PANTHER PTHR10799:SF610 394 676 9.6E-277 T 22-04-2016 PP4_RS05520 d457378b37b0724be322a1c097fa130a 948 PANTHER PTHR10799:SF610 781 822 9.6E-277 T 22-04-2016 PP4_RS05520 d457378b37b0724be322a1c097fa130a 948 SMART SM00487 150 347 2.3E-15 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PP4_RS05520 d457378b37b0724be322a1c097fa130a 948 PANTHER PTHR10799 150 352 9.6E-277 T 22-04-2016 PP4_RS05520 d457378b37b0724be322a1c097fa130a 948 PANTHER PTHR10799 874 948 9.6E-277 T 22-04-2016 PP4_RS05520 d457378b37b0724be322a1c097fa130a 948 PANTHER PTHR10799 394 676 9.6E-277 T 22-04-2016 PP4_RS05520 d457378b37b0724be322a1c097fa130a 948 PANTHER PTHR10799 781 822 9.6E-277 T 22-04-2016 PP4_RS05520 d457378b37b0724be322a1c097fa130a 948 Gene3D G3DSA:3.40.50.300 156 331 9.5E-16 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS05520 d457378b37b0724be322a1c097fa130a 948 Pfam PF00271 Helicase conserved C-terminal domain 476 584 5.0E-13 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS05520 d457378b37b0724be322a1c097fa130a 948 Pfam PF00176 SNF2 family N-terminal domain 119 343 2.5E-14 T 22-04-2016 IPR000330 SNF2-related, N-terminal domain GO:0005524 PP4_RS05520 d457378b37b0724be322a1c097fa130a 948 SUPERFAMILY SSF52540 463 631 4.82E-42 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS05520 d457378b37b0724be322a1c097fa130a 948 SUPERFAMILY SSF52540 271 335 4.82E-42 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS05520 d457378b37b0724be322a1c097fa130a 948 Pfam PF12137 RNA polymerase recycling family C-terminal 588 946 1.4E-139 T 22-04-2016 IPR022737 RNA polymerase recycling, bacterial, C-terminal GO:0016817 PP4_RS05520 d457378b37b0724be322a1c097fa130a 948 SMART SM00490 500 584 3.9E-15 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS05520 d457378b37b0724be322a1c097fa130a 948 Gene3D G3DSA:3.40.50.300 461 593 7.1E-22 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS05520 d457378b37b0724be322a1c097fa130a 948 Hamap MF_01821 RNA polymerase-associated protein RapA [rapA]. 3 948 70.808 T 22-04-2016 IPR023949 RNA polymerase-associated protein RapA GO:0006355 PP4_RS23210 95d579fdbcd7646509d006296bdd6ade 83 PANTHER PTHR36152:SF1 1 83 3.1E-16 T 22-04-2016 PP4_RS23210 95d579fdbcd7646509d006296bdd6ade 83 PANTHER PTHR36152 1 83 3.1E-16 T 22-04-2016 PP4_RS23210 95d579fdbcd7646509d006296bdd6ade 83 SUPERFAMILY SSF141452 2 83 4.58E-23 T 22-04-2016 IPR008514 Type VI secretion system effector, Hcp PP4_RS23210 95d579fdbcd7646509d006296bdd6ade 83 Gene3D G3DSA:2.30.110.20 1 83 3.2E-29 T 22-04-2016 IPR008514 Type VI secretion system effector, Hcp PP4_RS23210 95d579fdbcd7646509d006296bdd6ade 83 Pfam PF05638 Type VI secretion system effector, Hcp 6 83 7.9E-20 T 22-04-2016 IPR008514 Type VI secretion system effector, Hcp PP4_RS27395 7bf68f8f528bc902ec655bdd00814742 85 SUPERFAMILY SSF81333 3 78 1.15E-18 T 22-04-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 PP4_RS27395 7bf68f8f528bc902ec655bdd00814742 85 Gene3D G3DSA:1.20.20.10 2 78 1.8E-32 T 22-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 PP4_RS27395 7bf68f8f528bc902ec655bdd00814742 85 Pfam PF00137 ATP synthase subunit C 10 72 3.0E-9 T 22-04-2016 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 PP4_RS27395 7bf68f8f528bc902ec655bdd00814742 85 ProSitePatterns PS00605 ATP synthase c subunit signature. 39 60 - T 22-04-2016 IPR020537 ATPase, F0 complex, subunit C, DCCD-binding site PP4_RS27395 7bf68f8f528bc902ec655bdd00814742 85 PRINTS PR00124 ATP synthase C subunit signature 11 30 1.5E-6 T 22-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 PP4_RS27395 7bf68f8f528bc902ec655bdd00814742 85 PRINTS PR00124 ATP synthase C subunit signature 49 74 1.5E-6 T 22-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 PP4_RS27395 7bf68f8f528bc902ec655bdd00814742 85 PRINTS PR00124 ATP synthase C subunit signature 32 47 1.5E-6 T 22-04-2016 IPR000454 ATPase, F0 complex, subunit C GO:0015078|GO:0015986|GO:0045263 PP4_RS27395 7bf68f8f528bc902ec655bdd00814742 85 Hamap MF_01396 ATP synthase subunit c [atpH]. 8 76 14.624 T 22-04-2016 PP4_RS27395 7bf68f8f528bc902ec655bdd00814742 85 TIGRFAM TIGR01260 ATP_synt_c: ATP synthase F0, C subunit 20 76 1.4E-29 T 22-04-2016 IPR005953 ATPase, F0 complex, subunit C, bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 PP4_RS01160 008912c69ececde7cab5b85fcf00b72a 345 Pfam PF09084 NMT1/THI5 like 63 256 2.5E-21 T 22-04-2016 IPR015168 SsuA/THI5-like PP4_RS01160 008912c69ececde7cab5b85fcf00b72a 345 PANTHER PTHR30024:SF1 5 297 5.0E-37 T 22-04-2016 PP4_RS01160 008912c69ececde7cab5b85fcf00b72a 345 PANTHER PTHR30024 5 297 5.0E-37 T 22-04-2016 PP4_RS01160 008912c69ececde7cab5b85fcf00b72a 345 Gene3D G3DSA:3.40.190.10 127 247 9.5E-21 T 22-04-2016 PP4_RS01160 008912c69ececde7cab5b85fcf00b72a 345 SUPERFAMILY SSF53850 28 266 1.76E-38 T 22-04-2016 PP4_RS02815 0edb39ba34c4b3aa4ad2adfcb325a2cb 219 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 80 152 5.6E-14 T 22-04-2016 PP4_RS02815 0edb39ba34c4b3aa4ad2adfcb325a2cb 219 Gene3D G3DSA:3.40.50.150 48 180 7.9E-35 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS02815 0edb39ba34c4b3aa4ad2adfcb325a2cb 219 SUPERFAMILY SSF53335 47 175 2.81E-23 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS02815 0edb39ba34c4b3aa4ad2adfcb325a2cb 219 PANTHER PTHR14614 62 161 1.5E-19 T 22-04-2016 PP4_RS08355 c995e9b6119f365d53351192f223e790 231 PANTHER PTHR31885 3 211 4.1E-34 T 22-04-2016 PP4_RS08355 c995e9b6119f365d53351192f223e790 231 Pfam PF07947 YhhN-like protein 42 210 9.9E-38 T 22-04-2016 IPR012506 YhhN-like GO:0016021 PP4_RS26965 3e44a4b5619bae57e1d52bbd54906118 213 PANTHER PTHR19278 1 213 9.0E-133 T 22-04-2016 PP4_RS26965 3e44a4b5619bae57e1d52bbd54906118 213 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 213 35.089 T 22-04-2016 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|UniPathway: UPA00070 PP4_RS26965 3e44a4b5619bae57e1d52bbd54906118 213 SUPERFAMILY SSF53271 1 211 1.56E-48 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like PP4_RS26965 3e44a4b5619bae57e1d52bbd54906118 213 PANTHER PTHR19278:SF36 1 213 9.0E-133 T 22-04-2016 PP4_RS26965 3e44a4b5619bae57e1d52bbd54906118 213 Gene3D G3DSA:3.40.50.2020 7 212 3.7E-80 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like PP4_RS26965 3e44a4b5619bae57e1d52bbd54906118 213 TIGRFAM TIGR00336 pyrE: orotate phosphoribosyltransferase 11 186 1.1E-61 T 22-04-2016 IPR004467 Orotate phosphoribosyl transferase domain GO:0004588 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|UniPathway: UPA00070 PP4_RS26965 3e44a4b5619bae57e1d52bbd54906118 213 Pfam PF00156 Phosphoribosyl transferase domain 46 157 1.7E-11 T 22-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 PP4_RS01845 5b98004de97090b1b3a04768f5f6c97a 478 SMART SM00387 366 476 2.6E-17 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS01845 5b98004de97090b1b3a04768f5f6c97a 478 SMART SM00304 204 255 7.9E-6 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS01845 5b98004de97090b1b3a04768f5f6c97a 478 Pfam PF00512 His Kinase A (phospho-acceptor) domain 258 319 3.9E-14 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS01845 5b98004de97090b1b3a04768f5f6c97a 478 PANTHER PTHR24423 198 476 1.1E-57 T 22-04-2016 PP4_RS01845 5b98004de97090b1b3a04768f5f6c97a 478 PANTHER PTHR24423 4 17 1.1E-57 T 22-04-2016 PP4_RS01845 5b98004de97090b1b3a04768f5f6c97a 478 PANTHER PTHR24423 66 133 1.1E-57 T 22-04-2016 PP4_RS01845 5b98004de97090b1b3a04768f5f6c97a 478 Gene3D G3DSA:1.10.287.130 257 307 1.1E-12 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS01845 5b98004de97090b1b3a04768f5f6c97a 478 SUPERFAMILY SSF55874 311 474 2.36E-30 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS01845 5b98004de97090b1b3a04768f5f6c97a 478 SUPERFAMILY SSF103190 51 179 4.32E-15 T 22-04-2016 IPR029151 Periplasmic sensor domain-like PP4_RS01845 5b98004de97090b1b3a04768f5f6c97a 478 SUPERFAMILY SSF47384 239 319 9.81E-15 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS01845 5b98004de97090b1b3a04768f5f6c97a 478 Gene3D G3DSA:3.30.450.20 87 174 3.9E-6 T 22-04-2016 PP4_RS01845 5b98004de97090b1b3a04768f5f6c97a 478 Gene3D G3DSA:3.30.565.10 308 475 9.5E-29 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS01845 5b98004de97090b1b3a04768f5f6c97a 478 Pfam PF00672 HAMP domain 185 251 8.6E-12 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS01845 5b98004de97090b1b3a04768f5f6c97a 478 SMART SM00388 255 321 1.9E-16 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS01845 5b98004de97090b1b3a04768f5f6c97a 478 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 371 474 1.0E-11 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS05425 555267755ab9fa1feba61006efd20546 744 SUPERFAMILY SSF51445 379 724 4.83E-35 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily PP4_RS05425 555267755ab9fa1feba61006efd20546 744 Gene3D G3DSA:3.20.20.80 438 725 8.0E-26 T 22-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PP4_RS05425 555267755ab9fa1feba61006efd20546 744 Pfam PF02449 Beta-galactosidase 508 619 5.3E-5 T 22-04-2016 IPR013529 Glycoside hydrolase, family 42, N-terminal GO:0004565|GO:0005975|GO:0009341 KEGG: 00052+3.2.1.23|KEGG: 00511+3.2.1.23|KEGG: 00531+3.2.1.23|KEGG: 00600+3.2.1.23|KEGG: 00604+3.2.1.23|MetaCyc: PWY-6807 PP4_RS16680 fea9ff6caaf799beed66b5a5fc190147 362 PANTHER PTHR30011 1 357 1.2E-111 T 22-04-2016 PP4_RS16680 fea9ff6caaf799beed66b5a5fc190147 362 Gene3D G3DSA:3.20.20.30 287 357 9.9E-90 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS16680 fea9ff6caaf799beed66b5a5fc190147 362 Gene3D G3DSA:3.20.20.30 1 253 9.9E-90 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS16680 fea9ff6caaf799beed66b5a5fc190147 362 PANTHER PTHR30011:SF29 1 357 1.2E-111 T 22-04-2016 PP4_RS16680 fea9ff6caaf799beed66b5a5fc190147 362 SUPERFAMILY SSF51679 1 356 4.06E-74 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS16680 fea9ff6caaf799beed66b5a5fc190147 362 Pfam PF00296 Luciferase-like monooxygenase 4 325 6.9E-75 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS24870 b8904f40723e5896f602997ef11e2de8 433 Pfam PF02653 Branched-chain amino acid transport system / permease component 125 410 3.3E-46 T 22-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 PP4_RS24870 b8904f40723e5896f602997ef11e2de8 433 PANTHER PTHR30482 74 432 3.6E-174 T 22-04-2016 PP4_RS24870 b8904f40723e5896f602997ef11e2de8 433 PANTHER PTHR30482:SF9 74 432 3.6E-174 T 22-04-2016 PP4_RS24870 b8904f40723e5896f602997ef11e2de8 433 Pfam PF11862 Domain of unknown function (DUF3382) 20 117 5.0E-19 T 22-04-2016 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal PP4_RS13070 89a1acde8955bb96c250826d1e511dda 317 Gene3D G3DSA:3.40.50.150 124 265 1.1E-28 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS13070 89a1acde8955bb96c250826d1e511dda 317 PANTHER PTHR18895:SF64 124 256 7.0E-24 T 22-04-2016 PP4_RS13070 89a1acde8955bb96c250826d1e511dda 317 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 207 213 - T 22-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 PP4_RS13070 89a1acde8955bb96c250826d1e511dda 317 Pfam PF05175 Methyltransferase small domain 125 253 8.5E-17 T 22-04-2016 IPR007848 Methyltransferase small domain GO:0008168 PP4_RS13070 89a1acde8955bb96c250826d1e511dda 317 PANTHER PTHR18895 124 256 7.0E-24 T 22-04-2016 PP4_RS13070 89a1acde8955bb96c250826d1e511dda 317 SUPERFAMILY SSF53335 125 271 7.99E-28 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS27510 924c9d45d43e9abf4f8ca96ac5b786ed 380 ProDom PD062361 VC1766 YFJM PM0595 305 377 5.0E-14 T 22-04-2016 PP4_RS27510 924c9d45d43e9abf4f8ca96ac5b786ed 380 Pfam PF07510 Protein of unknown function (DUF1524) 245 372 3.6E-15 T 22-04-2016 IPR011089 Domain of unknown function DUF1524 PP4_RS09735 34fb2cac190cd1a6924bf38a3ba3e4aa 177 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 13 176 5.4E-68 T 22-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 PP4_RS09735 34fb2cac190cd1a6924bf38a3ba3e4aa 177 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 13 82 2.8E-30 T 22-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 PP4_RS09735 34fb2cac190cd1a6924bf38a3ba3e4aa 177 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 3 176 30.399 T 22-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 PP4_RS09735 34fb2cac190cd1a6924bf38a3ba3e4aa 177 Gene3D G3DSA:3.30.110.10 85 177 2.6E-40 T 22-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 PP4_RS09735 34fb2cac190cd1a6924bf38a3ba3e4aa 177 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 89 174 3.7E-37 T 22-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 PP4_RS09735 34fb2cac190cd1a6924bf38a3ba3e4aa 177 SUPERFAMILY SSF54364 12 84 5.75E-28 T 22-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 PP4_RS09735 34fb2cac190cd1a6924bf38a3ba3e4aa 177 Gene3D G3DSA:3.10.20.80 11 84 5.7E-34 T 22-04-2016 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 PP4_RS09735 34fb2cac190cd1a6924bf38a3ba3e4aa 177 SUPERFAMILY SSF55200 89 177 4.84E-33 T 22-04-2016 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 PP4_RS09735 34fb2cac190cd1a6924bf38a3ba3e4aa 177 PANTHER PTHR10938 13 177 5.2E-67 T 22-04-2016 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 PP4_RS23890 71c2b67f552fce076a9855222f5ebf79 289 Gene3D G3DSA:1.10.10.10 1 83 1.2E-29 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS23890 71c2b67f552fce076a9855222f5ebf79 289 Pfam PF03466 LysR substrate binding domain 87 277 3.3E-24 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS23890 71c2b67f552fce076a9855222f5ebf79 289 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 3.2E-25 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS23890 71c2b67f552fce076a9855222f5ebf79 289 SUPERFAMILY SSF53850 88 274 4.48E-22 T 22-04-2016 PP4_RS23890 71c2b67f552fce076a9855222f5ebf79 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 2.6E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS23890 71c2b67f552fce076a9855222f5ebf79 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 2.6E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS23890 71c2b67f552fce076a9855222f5ebf79 289 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 2.6E-7 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS23890 71c2b67f552fce076a9855222f5ebf79 289 Gene3D G3DSA:3.40.190.10 88 177 8.8E-15 T 22-04-2016 PP4_RS23890 71c2b67f552fce076a9855222f5ebf79 289 PANTHER PTHR30346 1 271 3.9E-70 T 22-04-2016 PP4_RS23890 71c2b67f552fce076a9855222f5ebf79 289 Gene3D G3DSA:3.40.190.10 178 258 1.1E-14 T 22-04-2016 PP4_RS23890 71c2b67f552fce076a9855222f5ebf79 289 SUPERFAMILY SSF46785 1 82 2.62E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS22715 3146dc1e621362b6b02157711190fb39 905 PANTHER PTHR26402 823 905 1.6E-13 T 22-04-2016 PP4_RS22715 3146dc1e621362b6b02157711190fb39 905 PANTHER PTHR26402 191 209 1.6E-13 T 22-04-2016 PP4_RS22715 3146dc1e621362b6b02157711190fb39 905 Pfam PF00196 Bacterial regulatory proteins, luxR family 843 897 3.0E-17 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS22715 3146dc1e621362b6b02157711190fb39 905 SMART SM00421 841 898 1.9E-22 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS22715 3146dc1e621362b6b02157711190fb39 905 SMART SM00382 46 206 0.0011 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS22715 3146dc1e621362b6b02157711190fb39 905 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 874 886 2.6E-10 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS22715 3146dc1e621362b6b02157711190fb39 905 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 858 874 2.6E-10 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS22715 3146dc1e621362b6b02157711190fb39 905 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 844 858 2.6E-10 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS22715 3146dc1e621362b6b02157711190fb39 905 PANTHER PTHR26402:SF437 823 905 1.6E-13 T 22-04-2016 PP4_RS22715 3146dc1e621362b6b02157711190fb39 905 PANTHER PTHR26402:SF437 191 209 1.6E-13 T 22-04-2016 PP4_RS22715 3146dc1e621362b6b02157711190fb39 905 SUPERFAMILY SSF52540 127 247 2.79E-6 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS22715 3146dc1e621362b6b02157711190fb39 905 SUPERFAMILY SSF52540 42 96 2.79E-6 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS22715 3146dc1e621362b6b02157711190fb39 905 Gene3D G3DSA:1.25.40.10 463 793 3.0E-29 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS22715 3146dc1e621362b6b02157711190fb39 905 SUPERFAMILY SSF48452 470 583 5.06E-8 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS22715 3146dc1e621362b6b02157711190fb39 905 ProSitePatterns PS00622 LuxR-type HTH domain signature. 858 885 - T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS22715 3146dc1e621362b6b02157711190fb39 905 Gene3D G3DSA:1.10.10.10 823 901 2.1E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS22715 3146dc1e621362b6b02157711190fb39 905 SUPERFAMILY SSF46894 831 903 1.8E-19 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS06275 da6cf290849529205767efff3ca5d8b0 259 SUPERFAMILY SSF88713 14 255 1.56E-94 T 22-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 PP4_RS06275 da6cf290849529205767efff3ca5d8b0 259 PANTHER PTHR30292 9 255 1.7E-118 T 22-04-2016 PP4_RS06275 da6cf290849529205767efff3ca5d8b0 259 PANTHER PTHR30292:SF0 9 255 1.7E-118 T 22-04-2016 PP4_RS06275 da6cf290849529205767efff3ca5d8b0 259 Pfam PF03746 LamB/YcsF family 15 254 8.3E-96 T 22-04-2016 IPR005501 Uncharacterised protein family UPF0271, LamB/YcsF PP4_RS06275 da6cf290849529205767efff3ca5d8b0 259 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 11 258 43.021 T 22-04-2016 IPR005501 Uncharacterised protein family UPF0271, LamB/YcsF PP4_RS04275 882383ba3a55e1e83f39e355e764987b 151 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 1 134 1.0E-63 T 22-04-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 PP4_RS04275 882383ba3a55e1e83f39e355e764987b 151 SUPERFAMILY SSF89447 2 136 4.08E-44 T 22-04-2016 PP4_RS04275 882383ba3a55e1e83f39e355e764987b 151 PANTHER PTHR34701 2 151 1.7E-58 T 22-04-2016 PP4_RS04275 882383ba3a55e1e83f39e355e764987b 151 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 2 148 2.8E-46 T 22-04-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 PP4_RS04275 882383ba3a55e1e83f39e355e764987b 151 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 151 54.782 T 22-04-2016 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 PP4_RS04275 882383ba3a55e1e83f39e355e764987b 151 Pfam PF02381 MraZ protein, putative antitoxin-like 2 75 1.2E-17 T 22-04-2016 IPR020603 MraZ domain PP4_RS04275 882383ba3a55e1e83f39e355e764987b 151 Pfam PF02381 MraZ protein, putative antitoxin-like 78 132 6.8E-15 T 22-04-2016 IPR020603 MraZ domain PP4_RS17895 a637c0e4219ff9cf26d5e4b99e212401 351 Gene3D G3DSA:1.10.10.60 288 334 4.9E-10 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS17895 a637c0e4219ff9cf26d5e4b99e212401 351 PANTHER PTHR11019 229 336 1.7E-19 T 22-04-2016 PP4_RS17895 a637c0e4219ff9cf26d5e4b99e212401 351 SMART SM00342 246 328 3.4E-16 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS17895 a637c0e4219ff9cf26d5e4b99e212401 351 SUPERFAMILY SSF46689 282 332 2.2E-8 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS17895 a637c0e4219ff9cf26d5e4b99e212401 351 Pfam PF12833 Helix-turn-helix domain 253 329 5.1E-14 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS17895 a637c0e4219ff9cf26d5e4b99e212401 351 PANTHER PTHR11019:SF52 229 336 1.7E-19 T 22-04-2016 PP4_RS17895 a637c0e4219ff9cf26d5e4b99e212401 351 Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term 21 202 2.4E-48 T 22-04-2016 IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal PP4_RS22350 9eb3b30d8541a7593604e4d257b4c248 302 PRINTS PR01755 Bacterial translocase SecF protein signature 31 46 3.4E-32 T 22-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial PP4_RS22350 9eb3b30d8541a7593604e4d257b4c248 302 PRINTS PR01755 Bacterial translocase SecF protein signature 191 209 3.4E-32 T 22-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial PP4_RS22350 9eb3b30d8541a7593604e4d257b4c248 302 PRINTS PR01755 Bacterial translocase SecF protein signature 223 238 3.4E-32 T 22-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial PP4_RS22350 9eb3b30d8541a7593604e4d257b4c248 302 PRINTS PR01755 Bacterial translocase SecF protein signature 143 157 3.4E-32 T 22-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial PP4_RS22350 9eb3b30d8541a7593604e4d257b4c248 302 Pfam PF02355 Protein export membrane protein 108 283 8.7E-66 T 22-04-2016 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial PP4_RS22350 9eb3b30d8541a7593604e4d257b4c248 302 SUPERFAMILY SSF82866 82 282 1.2E-38 T 22-04-2016 PP4_RS22350 9eb3b30d8541a7593604e4d257b4c248 302 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 88 272 2.4E-56 T 22-04-2016 IPR022645 Protein-export membrane protein SecD/SecF, bacterial PP4_RS22350 9eb3b30d8541a7593604e4d257b4c248 302 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 32 275 2.9E-80 T 22-04-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 PP4_RS22350 9eb3b30d8541a7593604e4d257b4c248 302 Pfam PF07549 SecD/SecF GG Motif 26 53 1.2E-10 T 22-04-2016 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site PP4_RS22350 9eb3b30d8541a7593604e4d257b4c248 302 Gene3D G3DSA:1.20.1640.10 94 282 1.4E-26 T 22-04-2016 PP4_RS22350 9eb3b30d8541a7593604e4d257b4c248 302 PANTHER PTHR30081 4 301 4.2E-85 T 22-04-2016 PP4_RS22350 9eb3b30d8541a7593604e4d257b4c248 302 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 4 286 28.152 T 22-04-2016 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 PP4_RS20670 cd53d41f24a17cd5f33aef8b70b6e44f 435 SUPERFAMILY SSF50952 62 92 1.27E-33 T 22-04-2016 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 PP4_RS20670 cd53d41f24a17cd5f33aef8b70b6e44f 435 SUPERFAMILY SSF50952 122 433 1.27E-33 T 22-04-2016 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 PP4_RS20670 cd53d41f24a17cd5f33aef8b70b6e44f 435 Pfam PF07995 Glucose / Sorbosone dehydrogenase 168 359 8.6E-13 T 22-04-2016 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 PP4_RS20670 cd53d41f24a17cd5f33aef8b70b6e44f 435 Gene3D G3DSA:2.120.10.30 14 17 3.7E-59 T 22-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like PP4_RS20670 cd53d41f24a17cd5f33aef8b70b6e44f 435 Gene3D G3DSA:2.120.10.30 59 433 3.7E-59 T 22-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like PP4_RS20670 cd53d41f24a17cd5f33aef8b70b6e44f 435 PANTHER PTHR19328:SF26 41 95 1.3E-155 T 22-04-2016 PP4_RS20670 cd53d41f24a17cd5f33aef8b70b6e44f 435 PANTHER PTHR19328:SF26 126 434 1.3E-155 T 22-04-2016 PP4_RS20670 cd53d41f24a17cd5f33aef8b70b6e44f 435 PANTHER PTHR19328 41 95 1.3E-155 T 22-04-2016 PP4_RS20670 cd53d41f24a17cd5f33aef8b70b6e44f 435 PANTHER PTHR19328 126 434 1.3E-155 T 22-04-2016 PP4_RS02480 d8d1a2222cea6d73e6abd2541fb6c18f 123 Pfam PF00164 Ribosomal protein S12/S23 9 123 2.7E-42 T 22-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02480 d8d1a2222cea6d73e6abd2541fb6c18f 123 PANTHER PTHR11652 1 116 1.2E-72 T 22-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02480 d8d1a2222cea6d73e6abd2541fb6c18f 123 PIRSF PIRSF002133 1 123 7.6E-53 T 22-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02480 d8d1a2222cea6d73e6abd2541fb6c18f 123 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 38.691 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 PP4_RS02480 d8d1a2222cea6d73e6abd2541fb6c18f 123 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 22-04-2016 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02480 d8d1a2222cea6d73e6abd2541fb6c18f 123 PRINTS PR01034 Ribosomal protein S12 signature 27 42 2.4E-59 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 PP4_RS02480 d8d1a2222cea6d73e6abd2541fb6c18f 123 PRINTS PR01034 Ribosomal protein S12 signature 58 77 2.4E-59 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 PP4_RS02480 d8d1a2222cea6d73e6abd2541fb6c18f 123 PRINTS PR01034 Ribosomal protein S12 signature 77 94 2.4E-59 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 PP4_RS02480 d8d1a2222cea6d73e6abd2541fb6c18f 123 PRINTS PR01034 Ribosomal protein S12 signature 42 57 2.4E-59 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 PP4_RS02480 d8d1a2222cea6d73e6abd2541fb6c18f 123 PRINTS PR01034 Ribosomal protein S12 signature 94 110 2.4E-59 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 PP4_RS02480 d8d1a2222cea6d73e6abd2541fb6c18f 123 PRINTS PR01034 Ribosomal protein S12 signature 110 122 2.4E-59 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 PP4_RS02480 d8d1a2222cea6d73e6abd2541fb6c18f 123 Gene3D G3DSA:2.40.50.140 1 123 2.0E-64 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS02480 d8d1a2222cea6d73e6abd2541fb6c18f 123 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 1 123 3.8E-69 T 22-04-2016 IPR005679 Ribosomal protein S12, bacteria GO:0003735|GO:0006412|GO:0015935 PP4_RS02480 d8d1a2222cea6d73e6abd2541fb6c18f 123 SUPERFAMILY SSF50249 3 123 1.26E-50 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS05100 a46e2f665012ec608486c22b5f7d908f 512 SUPERFAMILY SSF51395 22 497 3.82E-134 T 22-04-2016 PP4_RS05100 a46e2f665012ec608486c22b5f7d908f 512 Gene3D G3DSA:3.20.20.70 49 502 3.5E-123 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS05100 a46e2f665012ec608486c22b5f7d908f 512 PANTHER PTHR11938:SF50 159 512 3.4E-97 T 22-04-2016 PP4_RS05100 a46e2f665012ec608486c22b5f7d908f 512 PANTHER PTHR11938 159 512 3.4E-97 T 22-04-2016 PP4_RS05100 a46e2f665012ec608486c22b5f7d908f 512 Pfam PF01645 Conserved region in glutamate synthase 158 474 2.8E-82 T 22-04-2016 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 PP4_RS05100 a46e2f665012ec608486c22b5f7d908f 512 PIRSF PIRSF006429 6 512 7.1E-162 T 22-04-2016 IPR024188 Glutamate synthase large subunit-like protein PP4_RS05100 a46e2f665012ec608486c22b5f7d908f 512 PIRSF PIRSF500060 12 512 2.4E-239 T 22-04-2016 IPR027283 Glutamate synthase large subunit-like protein, bacteria PP4_RS09720 78d9908d8748f6abdaa92f209c001d16 70 SUPERFAMILY SSF50249 3 68 1.86E-25 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS09720 78d9908d8748f6abdaa92f209c001d16 70 Pfam PF00313 'Cold-shock' DNA-binding domain 6 68 1.5E-29 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PP4_RS09720 78d9908d8748f6abdaa92f209c001d16 70 PRINTS PR00050 Cold shock protein signature 28 37 2.5E-16 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PP4_RS09720 78d9908d8748f6abdaa92f209c001d16 70 PRINTS PR00050 Cold shock protein signature 7 22 2.5E-16 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PP4_RS09720 78d9908d8748f6abdaa92f209c001d16 70 PRINTS PR00050 Cold shock protein signature 43 61 2.5E-16 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PP4_RS09720 78d9908d8748f6abdaa92f209c001d16 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 22-04-2016 IPR019844 Cold-shock conserved site PP4_RS09720 78d9908d8748f6abdaa92f209c001d16 70 SMART SM00357 6 70 4.7E-26 T 22-04-2016 IPR011129 Cold shock protein GO:0003676 PP4_RS09720 78d9908d8748f6abdaa92f209c001d16 70 Gene3D G3DSA:2.40.50.140 5 68 2.8E-30 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS09720 78d9908d8748f6abdaa92f209c001d16 70 PIRSF PIRSF002599 1 70 3.1E-24 T 22-04-2016 IPR012156 Cold shock, CspA GO:0003676 PP4_RS09720 78d9908d8748f6abdaa92f209c001d16 70 PANTHER PTHR11544 1 69 1.8E-34 T 22-04-2016 PP4_RS13550 7c50bacec6bb47553dabf75013f80edb 292 Gene3D G3DSA:3.40.50.720 4 249 1.8E-65 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS13550 7c50bacec6bb47553dabf75013f80edb 292 PANTHER PTHR24322 161 192 8.0E-41 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13550 7c50bacec6bb47553dabf75013f80edb 292 PANTHER PTHR24322 11 136 8.0E-41 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13550 7c50bacec6bb47553dabf75013f80edb 292 PANTHER PTHR24322:SF428 161 192 8.0E-41 T 22-04-2016 PP4_RS13550 7c50bacec6bb47553dabf75013f80edb 292 PANTHER PTHR24322:SF428 11 136 8.0E-41 T 22-04-2016 PP4_RS13550 7c50bacec6bb47553dabf75013f80edb 292 SUPERFAMILY SSF51735 5 250 9.84E-60 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS13550 7c50bacec6bb47553dabf75013f80edb 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 3.7E-19 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13550 7c50bacec6bb47553dabf75013f80edb 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 3.7E-19 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13550 7c50bacec6bb47553dabf75013f80edb 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 3.7E-19 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13550 7c50bacec6bb47553dabf75013f80edb 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 3.7E-19 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13550 7c50bacec6bb47553dabf75013f80edb 292 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 3.7E-19 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13550 7c50bacec6bb47553dabf75013f80edb 292 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 192 3.6E-4 T 22-04-2016 PP4_RS13550 7c50bacec6bb47553dabf75013f80edb 292 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 141 149 3.5E-7 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13550 7c50bacec6bb47553dabf75013f80edb 292 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 161 180 3.5E-7 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13550 7c50bacec6bb47553dabf75013f80edb 292 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 3.5E-7 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13550 7c50bacec6bb47553dabf75013f80edb 292 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 148 176 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PP4_RS13550 7c50bacec6bb47553dabf75013f80edb 292 Pfam PF00106 short chain dehydrogenase 8 201 5.5E-42 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS16385 0a886015916766942a6d260ad61d921d 526 Gene3D G3DSA:3.40.605.10 9 265 6.8E-46 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS16385 0a886015916766942a6d260ad61d921d 526 Gene3D G3DSA:3.40.309.10 267 454 8.8E-58 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PP4_RS16385 0a886015916766942a6d260ad61d921d 526 PANTHER PTHR11699 1 519 6.2E-162 T 22-04-2016 PP4_RS16385 0a886015916766942a6d260ad61d921d 526 SUPERFAMILY SSF53720 22 518 3.93E-103 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS16385 0a886015916766942a6d260ad61d921d 526 Pfam PF00171 Aldehyde dehydrogenase family 25 459 1.4E-49 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PP4_RS16385 0a886015916766942a6d260ad61d921d 526 PANTHER PTHR11699:SF10 1 519 6.2E-162 T 22-04-2016 PP4_RS23050 7314e092936f54408f0b3206610c1539 191 Pfam PF08291 Peptidase M15 102 169 2.5E-8 T 22-04-2016 IPR013230 Peptidase M15A, C-terminal MetaCyc: PWY-6470 PP4_RS23050 7314e092936f54408f0b3206610c1539 191 SUPERFAMILY SSF55166 59 177 1.06E-17 T 22-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain PP4_RS23050 7314e092936f54408f0b3206610c1539 191 Gene3D G3DSA:3.30.1380.10 71 178 5.7E-20 T 22-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain PP4_RS25805 da5daf413a18b3d97ba5f212786d028f 511 Gene3D G3DSA:3.40.720.10 312 508 1.2E-88 T 22-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 PP4_RS25805 da5daf413a18b3d97ba5f212786d028f 511 Gene3D G3DSA:3.40.720.10 6 79 1.2E-88 T 22-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 PP4_RS25805 da5daf413a18b3d97ba5f212786d028f 511 TIGRFAM TIGR01307 pgm_bpd_ind: phosphoglycerate mutase (2,3-diphosphoglycerate-independent) 6 508 5.2E-236 T 22-04-2016 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 PP4_RS25805 da5daf413a18b3d97ba5f212786d028f 511 SUPERFAMILY SSF53649 5 79 4.45E-78 T 22-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 PP4_RS25805 da5daf413a18b3d97ba5f212786d028f 511 SUPERFAMILY SSF53649 308 508 4.45E-78 T 22-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 PP4_RS25805 da5daf413a18b3d97ba5f212786d028f 511 PANTHER PTHR31637:SF0 1 511 1.2E-286 T 22-04-2016 PP4_RS25805 da5daf413a18b3d97ba5f212786d028f 511 SUPERFAMILY SSF64158 79 307 1.57E-83 T 22-04-2016 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 PP4_RS25805 da5daf413a18b3d97ba5f212786d028f 511 Gene3D G3DSA:3.40.1450.10 80 307 5.2E-94 T 22-04-2016 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 PP4_RS25805 da5daf413a18b3d97ba5f212786d028f 511 PANTHER PTHR31637 1 511 1.2E-286 T 22-04-2016 PP4_RS25805 da5daf413a18b3d97ba5f212786d028f 511 Pfam PF06415 BPG-independent PGAM N-terminus (iPGM_N) 84 296 4.2E-80 T 22-04-2016 IPR011258 BPG-independent PGAM, N-terminal GO:0004619|GO:0005737|GO:0006007|GO:0030145 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 PP4_RS25805 da5daf413a18b3d97ba5f212786d028f 511 PIRSF PIRSF001492 1 511 3.9E-206 T 22-04-2016 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 PP4_RS25805 da5daf413a18b3d97ba5f212786d028f 511 Pfam PF01676 Metalloenzyme superfamily 6 498 8.7E-83 T 22-04-2016 IPR006124 Metalloenzyme GO:0003824|GO:0046872 PP4_RS25805 da5daf413a18b3d97ba5f212786d028f 511 Hamap MF_01038 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [gpmI]. 6 509 51.034 T 22-04-2016 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent GO:0004619|GO:0006007 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|UniPathway: UPA00109 PP4_RS17920 cd2b647bab027a37ec59bdf863714f57 326 Gene3D G3DSA:3.90.180.10 2 148 8.0E-42 T 22-04-2016 IPR011032 GroES-like PP4_RS17920 cd2b647bab027a37ec59bdf863714f57 326 PANTHER PTHR11695:SF605 16 326 2.4E-117 T 22-04-2016 PP4_RS17920 cd2b647bab027a37ec59bdf863714f57 326 Pfam PF00107 Zinc-binding dehydrogenase 153 258 3.6E-28 T 22-04-2016 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 PP4_RS17920 cd2b647bab027a37ec59bdf863714f57 326 ProSitePatterns PS01162 Quinone oxidoreductase / zeta-crystallin signature. 142 163 - T 22-04-2016 IPR002364 Quinone oxidoreductase/zeta-crystallin, conserved site GO:0008270|GO:0016491 PP4_RS17920 cd2b647bab027a37ec59bdf863714f57 326 SUPERFAMILY SSF50129 2 146 1.46E-35 T 22-04-2016 IPR011032 GroES-like PP4_RS17920 cd2b647bab027a37ec59bdf863714f57 326 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 28 91 5.2E-8 T 22-04-2016 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 PP4_RS17920 cd2b647bab027a37ec59bdf863714f57 326 SMART SM00829 11 324 1.3E-30 T 22-04-2016 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 PP4_RS17920 cd2b647bab027a37ec59bdf863714f57 326 SUPERFAMILY SSF51735 115 265 2.91E-46 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS17920 cd2b647bab027a37ec59bdf863714f57 326 Gene3D G3DSA:3.40.50.720 149 255 2.2E-31 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS17920 cd2b647bab027a37ec59bdf863714f57 326 PANTHER PTHR11695 16 326 2.4E-117 T 22-04-2016 IPR002085 Alcohol dehydrogenase superfamily, zinc-type GO:0008270|GO:0016491|GO:0055114 PP4_RS21015 452c8b78766c9c8257c73d214ea9282b 396 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 149 237 1.2E-37 T 22-04-2016 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 PP4_RS21015 452c8b78766c9c8257c73d214ea9282b 396 PIRSF PIRSF006205 4 396 1.2E-148 T 22-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 PP4_RS21015 452c8b78766c9c8257c73d214ea9282b 396 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 7 390 46.945 T 22-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 PP4_RS21015 452c8b78766c9c8257c73d214ea9282b 396 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 6 389 8.0E-155 T 22-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 PP4_RS21015 452c8b78766c9c8257c73d214ea9282b 396 SUPERFAMILY SSF51735 4 153 4.65E-46 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS21015 452c8b78766c9c8257c73d214ea9282b 396 Gene3D G3DSA:3.40.50.720 3 153 6.9E-52 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS21015 452c8b78766c9c8257c73d214ea9282b 396 PANTHER PTHR30525 2 394 3.2E-217 T 22-04-2016 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 PP4_RS21015 452c8b78766c9c8257c73d214ea9282b 396 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 7 135 4.6E-45 T 22-04-2016 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 PP4_RS21015 452c8b78766c9c8257c73d214ea9282b 396 Gene3D G3DSA:1.10.1740.10 311 392 4.6E-31 T 22-04-2016 PP4_RS21015 452c8b78766c9c8257c73d214ea9282b 396 SUPERFAMILY SSF69055 300 393 1.44E-31 T 22-04-2016 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 PP4_RS21015 452c8b78766c9c8257c73d214ea9282b 396 Pfam PF13288 DXP reductoisomerase C-terminal domain 269 385 1.5E-43 T 22-04-2016 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00630+1.1.1.26|KEGG: 00900+1.1.1.267|MetaCyc: PWY-7294|MetaCyc: PWY-7295|MetaCyc: PWY-7560|UniPathway: UPA00056 PP4_RS21015 452c8b78766c9c8257c73d214ea9282b 396 SUPERFAMILY SSF55347 129 272 6.87E-60 T 22-04-2016 PP4_RS00480 95300ac5f415b2807a05448d4cb77f0f 295 SUPERFAMILY SSF81452 2 295 1.26E-82 T 22-04-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 PP4_RS00480 95300ac5f415b2807a05448d4cb77f0f 295 Pfam PF00510 Cytochrome c oxidase subunit III 7 119 4.6E-10 T 22-04-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 PP4_RS00480 95300ac5f415b2807a05448d4cb77f0f 295 Pfam PF00510 Cytochrome c oxidase subunit III 154 294 1.7E-42 T 22-04-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 PP4_RS00480 95300ac5f415b2807a05448d4cb77f0f 295 PANTHER PTHR11403:SF0 1 120 4.5E-115 T 22-04-2016 PP4_RS00480 95300ac5f415b2807a05448d4cb77f0f 295 PANTHER PTHR11403:SF0 150 295 4.5E-115 T 22-04-2016 PP4_RS00480 95300ac5f415b2807a05448d4cb77f0f 295 Gene3D G3DSA:1.10.287.70 2 75 1.9E-18 T 22-04-2016 PP4_RS00480 95300ac5f415b2807a05448d4cb77f0f 295 PANTHER PTHR11403 1 120 4.5E-115 T 22-04-2016 IPR024791 Cytochrome c oxidase subunit III GO:0015002|GO:0016020|GO:0019646 PP4_RS00480 95300ac5f415b2807a05448d4cb77f0f 295 PANTHER PTHR11403 150 295 4.5E-115 T 22-04-2016 IPR024791 Cytochrome c oxidase subunit III GO:0015002|GO:0016020|GO:0019646 PP4_RS00480 95300ac5f415b2807a05448d4cb77f0f 295 Gene3D G3DSA:1.20.120.80 79 294 6.0E-68 T 22-04-2016 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 PP4_RS01255 d9cca52cbe233f01fcaee38e420e6982 222 PANTHER PTHR30614 6 221 1.8E-116 T 22-04-2016 PP4_RS01255 d9cca52cbe233f01fcaee38e420e6982 222 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 34 216 9.0E-22 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS01255 d9cca52cbe233f01fcaee38e420e6982 222 Gene3D G3DSA:1.10.3720.10 13 216 6.5E-53 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS01255 d9cca52cbe233f01fcaee38e420e6982 222 SUPERFAMILY SSF161098 14 207 1.31E-50 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS01255 d9cca52cbe233f01fcaee38e420e6982 222 PANTHER PTHR30614:SF18 6 221 1.8E-116 T 22-04-2016 PP4_RS01255 d9cca52cbe233f01fcaee38e420e6982 222 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 110 1.6E-33 T 22-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PP4_RS27535 ae3d2c2a2fa6ed2ca42674870d54f8d4 70 Pfam PF13627 Prokaryotic lipoprotein-attachment site 9 30 1.4E-9 T 22-04-2016 IPR032831 Prokaryotic lipoprotein-attachment site PP4_RS21590 397dc7c4e3ffba707b0c0d9b9099e8b2 251 PANTHER PTHR30269 7 251 2.0E-41 T 22-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 PP4_RS21590 397dc7c4e3ffba707b0c0d9b9099e8b2 251 PANTHER PTHR30269:SF14 7 251 2.0E-41 T 22-04-2016 PP4_RS21590 397dc7c4e3ffba707b0c0d9b9099e8b2 251 Pfam PF01925 Sulfite exporter TauE/SafE 16 243 2.8E-27 T 22-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 PP4_RS15930 e0447e34e215c736fc32cf61a5adb34f 212 PANTHER PTHR26402 1 210 6.5E-59 T 22-04-2016 PP4_RS15930 e0447e34e215c736fc32cf61a5adb34f 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 148 162 3.4E-9 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS15930 e0447e34e215c736fc32cf61a5adb34f 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 178 190 3.4E-9 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS15930 e0447e34e215c736fc32cf61a5adb34f 212 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 162 178 3.4E-9 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS15930 e0447e34e215c736fc32cf61a5adb34f 212 Gene3D G3DSA:1.10.10.10 119 209 1.0E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS15930 e0447e34e215c736fc32cf61a5adb34f 212 Pfam PF00196 Bacterial regulatory proteins, luxR family 147 201 5.4E-16 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS15930 e0447e34e215c736fc32cf61a5adb34f 212 PANTHER PTHR26402:SF210 1 210 6.5E-59 T 22-04-2016 PP4_RS15930 e0447e34e215c736fc32cf61a5adb34f 212 SUPERFAMILY SSF46894 140 208 4.42E-17 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS15930 e0447e34e215c736fc32cf61a5adb34f 212 Gene3D G3DSA:3.40.50.2300 1 118 1.8E-34 T 22-04-2016 PP4_RS15930 e0447e34e215c736fc32cf61a5adb34f 212 SUPERFAMILY SSF52172 1 129 1.41E-34 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS15930 e0447e34e215c736fc32cf61a5adb34f 212 Pfam PF00072 Response regulator receiver domain 3 115 1.8E-28 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS15930 e0447e34e215c736fc32cf61a5adb34f 212 SMART SM00421 145 202 4.2E-15 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS15930 e0447e34e215c736fc32cf61a5adb34f 212 SMART SM00448 1 114 1.1E-32 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS23600 6eb38e5ae6e6309cfaf377ca44701178 287 Pfam PF02569 Pantoate-beta-alanine ligase 3 278 7.5E-105 T 22-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 PP4_RS23600 6eb38e5ae6e6309cfaf377ca44701178 287 Gene3D G3DSA:3.40.50.620 1 174 4.5E-78 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS23600 6eb38e5ae6e6309cfaf377ca44701178 287 SUPERFAMILY SSF52374 1 283 4.44E-109 T 22-04-2016 PP4_RS23600 6eb38e5ae6e6309cfaf377ca44701178 287 Hamap MF_00158 Pantothenate synthetase [panC]. 2 280 41.388 T 22-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 PP4_RS23600 6eb38e5ae6e6309cfaf377ca44701178 287 PANTHER PTHR21299 1 285 6.1E-135 T 22-04-2016 PP4_RS23600 6eb38e5ae6e6309cfaf377ca44701178 287 PANTHER PTHR21299:SF1 1 285 6.1E-135 T 22-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 PP4_RS23600 6eb38e5ae6e6309cfaf377ca44701178 287 Gene3D G3DSA:3.30.1300.10 177 285 7.0E-30 T 22-04-2016 PP4_RS23600 6eb38e5ae6e6309cfaf377ca44701178 287 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 1 280 1.7E-106 T 22-04-2016 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1|UniPathway: UPA00028 PP4_RS17465 371cfc422ceb5cd6723942643fbbd6e6 118 TIGRFAM TIGR03367 queuosine_QueD: queuosine biosynthesis protein QueD 2 94 2.7E-32 T 22-04-2016 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein PP4_RS17465 371cfc422ceb5cd6723942643fbbd6e6 118 PIRSF PIRSF006113 1 118 1.0E-49 T 22-04-2016 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein PP4_RS17465 371cfc422ceb5cd6723942643fbbd6e6 118 Gene3D G3DSA:3.30.479.10 1 117 7.4E-41 T 22-04-2016 PP4_RS17465 371cfc422ceb5cd6723942643fbbd6e6 118 SUPERFAMILY SSF55620 2 116 1.17E-40 T 22-04-2016 PP4_RS17465 371cfc422ceb5cd6723942643fbbd6e6 118 PANTHER PTHR12589 1 118 1.0E-48 T 22-04-2016 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein PP4_RS17465 371cfc422ceb5cd6723942643fbbd6e6 118 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 2 117 9.1E-36 T 22-04-2016 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family protein PP4_RS12710 0f460752966be55a72de008696dbf21b 334 PANTHER PTHR38785 1 302 5.0E-41 T 22-04-2016 PP4_RS12710 0f460752966be55a72de008696dbf21b 334 Pfam PF04393 Protein of unknown function (DUF535) 19 297 9.4E-70 T 22-04-2016 IPR007488 Protein of unknown function DUF535 PP4_RS25525 fcd1a5934dbdddda3ce945b64bd1c0ea 172 SUPERFAMILY SSF53271 8 153 1.44E-30 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like PP4_RS25525 fcd1a5934dbdddda3ce945b64bd1c0ea 172 Pfam PF00156 Phosphoribosyl transferase domain 28 135 1.5E-13 T 22-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 PP4_RS25525 fcd1a5934dbdddda3ce945b64bd1c0ea 172 Gene3D G3DSA:3.40.50.2020 7 151 2.7E-32 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like PP4_RS25525 fcd1a5934dbdddda3ce945b64bd1c0ea 172 Hamap MF_01219 Bifunctional protein PyrR [pyrR]. 1 168 26.626 T 22-04-2016 IPR023050 Bifunctional protein PyrR KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 PP4_RS25525 fcd1a5934dbdddda3ce945b64bd1c0ea 172 PANTHER PTHR11608 1 170 5.6E-63 T 22-04-2016 PP4_RS23540 91177767e7345e8dd8ccf23db12a2518 294 SUPERFAMILY SSF53807 27 286 1.88E-52 T 22-04-2016 PP4_RS23540 91177767e7345e8dd8ccf23db12a2518 294 Gene3D G3DSA:3.40.50.1980 27 141 1.8E-25 T 22-04-2016 PP4_RS23540 91177767e7345e8dd8ccf23db12a2518 294 Pfam PF01497 Periplasmic binding protein 31 263 4.7E-38 T 22-04-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 PP4_RS23540 91177767e7345e8dd8ccf23db12a2518 294 PANTHER PTHR30535:SF4 24 289 4.6E-87 T 22-04-2016 PP4_RS23540 91177767e7345e8dd8ccf23db12a2518 294 Gene3D G3DSA:3.40.50.1980 142 287 7.6E-22 T 22-04-2016 PP4_RS23540 91177767e7345e8dd8ccf23db12a2518 294 PANTHER PTHR30535 24 289 4.6E-87 T 22-04-2016 PP4_RS13670 200f34eba4b3ac9877aa4d708791f3a0 384 Gene3D G3DSA:1.10.540.10 5 121 5.9E-19 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS13670 200f34eba4b3ac9877aa4d708791f3a0 384 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 141 200 1.1E-9 T 22-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 PP4_RS13670 200f34eba4b3ac9877aa4d708791f3a0 384 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 231 377 6.9E-28 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS13670 200f34eba4b3ac9877aa4d708791f3a0 384 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 120 7.7E-16 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS13670 200f34eba4b3ac9877aa4d708791f3a0 384 PANTHER PTHR10909 1 370 2.7E-70 T 22-04-2016 PP4_RS13670 200f34eba4b3ac9877aa4d708791f3a0 384 SUPERFAMILY SSF56645 1 234 1.96E-42 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 PP4_RS13670 200f34eba4b3ac9877aa4d708791f3a0 384 Gene3D G3DSA:2.40.110.10 136 218 2.8E-15 T 22-04-2016 PP4_RS13670 200f34eba4b3ac9877aa4d708791f3a0 384 PANTHER PTHR10909:SF302 1 370 2.7E-70 T 22-04-2016 PP4_RS13670 200f34eba4b3ac9877aa4d708791f3a0 384 SUPERFAMILY SSF47203 231 377 9.83E-35 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS13670 200f34eba4b3ac9877aa4d708791f3a0 384 Gene3D G3DSA:1.20.140.10 219 375 9.5E-36 T 22-04-2016 PP4_RS11000 958bf84da70f2835ef80b7d6c7e5aea0 441 PIRSF PIRSF500061 2 440 3.1E-172 T 22-04-2016 PP4_RS11000 958bf84da70f2835ef80b7d6c7e5aea0 441 PIRSF PIRSF006429 3 440 3.1E-150 T 22-04-2016 IPR024188 Glutamate synthase large subunit-like protein PP4_RS11000 958bf84da70f2835ef80b7d6c7e5aea0 441 PANTHER PTHR11938 350 393 4.6E-52 T 22-04-2016 PP4_RS11000 958bf84da70f2835ef80b7d6c7e5aea0 441 PANTHER PTHR11938 122 333 4.6E-52 T 22-04-2016 PP4_RS11000 958bf84da70f2835ef80b7d6c7e5aea0 441 PANTHER PTHR11938:SF65 350 393 4.6E-52 T 22-04-2016 PP4_RS11000 958bf84da70f2835ef80b7d6c7e5aea0 441 PANTHER PTHR11938:SF65 122 333 4.6E-52 T 22-04-2016 PP4_RS11000 958bf84da70f2835ef80b7d6c7e5aea0 441 Pfam PF01645 Conserved region in glutamate synthase 360 402 1.8E-5 T 22-04-2016 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 PP4_RS11000 958bf84da70f2835ef80b7d6c7e5aea0 441 Pfam PF01645 Conserved region in glutamate synthase 80 331 1.7E-79 T 22-04-2016 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 PP4_RS11000 958bf84da70f2835ef80b7d6c7e5aea0 441 Gene3D G3DSA:3.20.20.70 7 439 1.0E-123 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS11000 958bf84da70f2835ef80b7d6c7e5aea0 441 SUPERFAMILY SSF51395 10 422 1.34E-94 T 22-04-2016 PP4_RS16760 3f2205de1caf9b1e34c9c0bc31f1941e 250 PANTHER PTHR30151:SF8 1 247 9.2E-67 T 22-04-2016 PP4_RS16760 3f2205de1caf9b1e34c9c0bc31f1941e 250 SUPERFAMILY SSF161098 52 239 2.35E-26 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS16760 3f2205de1caf9b1e34c9c0bc31f1941e 250 PANTHER PTHR30151 1 247 9.2E-67 T 22-04-2016 PP4_RS16760 3f2205de1caf9b1e34c9c0bc31f1941e 250 Gene3D G3DSA:1.10.3720.10 52 245 6.3E-19 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS16760 3f2205de1caf9b1e34c9c0bc31f1941e 250 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 75 245 1.4E-20 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS12750 e233ba2445b143f45676d431d9bb57cc 431 Gene3D G3DSA:3.50.50.60 347 393 3.8E-51 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS12750 e233ba2445b143f45676d431d9bb57cc 431 Gene3D G3DSA:3.50.50.60 175 254 3.8E-51 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS12750 e233ba2445b143f45676d431d9bb57cc 431 Gene3D G3DSA:3.50.50.60 18 121 3.8E-51 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS12750 e233ba2445b143f45676d431d9bb57cc 431 PANTHER PTHR13847 8 428 2.5E-141 T 22-04-2016 PP4_RS12750 e233ba2445b143f45676d431d9bb57cc 431 Pfam PF01266 FAD dependent oxidoreductase 32 385 1.1E-53 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PP4_RS12750 e233ba2445b143f45676d431d9bb57cc 431 PANTHER PTHR13847:SF210 8 428 2.5E-141 T 22-04-2016 PP4_RS12750 e233ba2445b143f45676d431d9bb57cc 431 SUPERFAMILY SSF51905 347 424 8.29E-45 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS12750 e233ba2445b143f45676d431d9bb57cc 431 SUPERFAMILY SSF51905 31 255 8.29E-45 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS25540 5ed30b56fcea65a145c5962a1f752767 176 Gene3D G3DSA:3.60.20.10 2 171 2.5E-84 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PP4_RS25540 5ed30b56fcea65a145c5962a1f752767 176 SUPERFAMILY SSF56235 2 170 1.32E-57 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PP4_RS25540 5ed30b56fcea65a145c5962a1f752767 176 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 1 172 42.156 T 22-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 PP4_RS25540 5ed30b56fcea65a145c5962a1f752767 176 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 2 171 8.6E-87 T 22-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 PP4_RS25540 5ed30b56fcea65a145c5962a1f752767 176 PANTHER PTHR32194 2 171 2.5E-125 T 22-04-2016 PP4_RS25540 5ed30b56fcea65a145c5962a1f752767 176 PIRSF PIRSF039093 1 174 2.2E-86 T 22-04-2016 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 PP4_RS25540 5ed30b56fcea65a145c5962a1f752767 176 Pfam PF00227 Proteasome subunit 2 169 6.2E-22 T 22-04-2016 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: REACT_11045|Reactome: REACT_13|Reactome: REACT_13635|Reactome: REACT_152|Reactome: REACT_1538|Reactome: REACT_383|Reactome: REACT_578|Reactome: REACT_6185|Reactome: REACT_6850 PP4_RS05130 087a3ba867243c516c2738ea0584129c 442 Gene3D G3DSA:1.10.10.60 386 441 2.2E-13 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS05130 087a3ba867243c516c2738ea0584129c 442 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 405 422 5.1E-9 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS05130 087a3ba867243c516c2738ea0584129c 442 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 422 442 5.1E-9 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS05130 087a3ba867243c516c2738ea0584129c 442 PANTHER PTHR32071 8 441 1.6E-247 T 22-04-2016 PP4_RS05130 087a3ba867243c516c2738ea0584129c 442 Pfam PF00158 Sigma-54 interaction domain 147 313 1.6E-68 T 22-04-2016 IPR002078 RNA polymerase sigma factor 54 interaction domain GO:0005524|GO:0006355|GO:0008134 PP4_RS05130 087a3ba867243c516c2738ea0584129c 442 Pfam PF00072 Response regulator receiver domain 8 117 3.8E-26 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS05130 087a3ba867243c516c2738ea0584129c 442 Pfam PF02954 Bacterial regulatory protein, Fis family 399 439 6.5E-10 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS05130 087a3ba867243c516c2738ea0584129c 442 SUPERFAMILY SSF52172 5 192 7.12E-43 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS05130 087a3ba867243c516c2738ea0584129c 442 PANTHER PTHR32071:SF11 8 441 1.6E-247 T 22-04-2016 PP4_RS05130 087a3ba867243c516c2738ea0584129c 442 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 171 184 - T 22-04-2016 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 PP4_RS05130 087a3ba867243c516c2738ea0584129c 442 SUPERFAMILY SSF46689 358 441 1.34E-11 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS05130 087a3ba867243c516c2738ea0584129c 442 ProSitePatterns PS00676 Sigma-54 interaction domain ATP-binding region B signature. 233 248 - T 22-04-2016 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 PP4_RS05130 087a3ba867243c516c2738ea0584129c 442 Gene3D G3DSA:1.10.8.60 320 376 2.3E-21 T 22-04-2016 PP4_RS05130 087a3ba867243c516c2738ea0584129c 442 SMART SM00382 167 310 1.8E-8 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS05130 087a3ba867243c516c2738ea0584129c 442 SMART SM00448 6 117 5.1E-30 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS05130 087a3ba867243c516c2738ea0584129c 442 Gene3D G3DSA:3.40.50.2300 4 129 2.1E-35 T 22-04-2016 PP4_RS05130 087a3ba867243c516c2738ea0584129c 442 ProSitePatterns PS00688 Sigma-54 interaction domain C-terminal part signature. 360 369 - T 22-04-2016 IPR025944 Sigma-54 interaction domain, conserved site PP4_RS05130 087a3ba867243c516c2738ea0584129c 442 SUPERFAMILY SSF52540 147 376 8.08E-71 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS05130 087a3ba867243c516c2738ea0584129c 442 Gene3D G3DSA:3.40.50.300 146 319 1.1E-57 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS07790 3c6b8e799fb7b50bae2f043b01d6db12 176 Gene3D G3DSA:1.10.1740.10 21 83 1.8E-11 T 22-04-2016 PP4_RS07790 3c6b8e799fb7b50bae2f043b01d6db12 176 SUPERFAMILY SSF88659 102 174 2.43E-13 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS07790 3c6b8e799fb7b50bae2f043b01d6db12 176 Gene3D G3DSA:1.10.10.10 115 171 8.0E-10 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS07790 3c6b8e799fb7b50bae2f043b01d6db12 176 SUPERFAMILY SSF88946 18 94 6.02E-14 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS07790 3c6b8e799fb7b50bae2f043b01d6db12 176 PANTHER PTHR30173:SF9 16 175 3.3E-38 T 22-04-2016 PP4_RS07790 3c6b8e799fb7b50bae2f043b01d6db12 176 Pfam PF04542 Sigma-70 region 2 20 83 2.1E-13 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS07790 3c6b8e799fb7b50bae2f043b01d6db12 176 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 17 169 2.7E-23 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS07790 3c6b8e799fb7b50bae2f043b01d6db12 176 PANTHER PTHR30173 16 175 3.3E-38 T 22-04-2016 PP4_RS07790 3c6b8e799fb7b50bae2f043b01d6db12 176 Pfam PF08281 Sigma-70, region 4 116 168 7.3E-14 T 22-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS24640 eb421da75a96e5220754cb3b9caf057c 106 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 69 86 4.4E-10 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS24640 eb421da75a96e5220754cb3b9caf057c 106 PRINTS PR01590 FIS bacterial regulatory protein HTH signature 86 106 4.4E-10 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS24640 eb421da75a96e5220754cb3b9caf057c 106 Pfam PF02954 Bacterial regulatory protein, Fis family 63 103 8.9E-14 T 22-04-2016 IPR002197 DNA binding HTH domain, Fis-type GO:0043565 PP4_RS24640 eb421da75a96e5220754cb3b9caf057c 106 Gene3D G3DSA:1.10.10.60 35 105 2.4E-24 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS24640 eb421da75a96e5220754cb3b9caf057c 106 PRINTS PR01591 DNA-binding protein FIS signature 50 65 2.5E-12 T 22-04-2016 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 PP4_RS24640 eb421da75a96e5220754cb3b9caf057c 106 PRINTS PR01591 DNA-binding protein FIS signature 34 50 2.5E-12 T 22-04-2016 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 PP4_RS24640 eb421da75a96e5220754cb3b9caf057c 106 PRINTS PR01591 DNA-binding protein FIS signature 65 77 2.5E-12 T 22-04-2016 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 PP4_RS24640 eb421da75a96e5220754cb3b9caf057c 106 PIRSF PIRSF002097 8 106 1.8E-40 T 22-04-2016 IPR005412 DNA-binding protein Fis GO:0003677|GO:0006355 PP4_RS24640 eb421da75a96e5220754cb3b9caf057c 106 SUPERFAMILY SSF46689 25 105 5.02E-22 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS24640 eb421da75a96e5220754cb3b9caf057c 106 PANTHER PTHR32071 28 105 2.6E-21 T 22-04-2016 PP4_RS13515 f819489935cb9a8db578991728b98c30 254 Gene3D G3DSA:3.40.50.720 4 249 4.2E-53 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS13515 f819489935cb9a8db578991728b98c30 254 PANTHER PTHR24322 6 111 1.2E-20 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13515 f819489935cb9a8db578991728b98c30 254 PANTHER PTHR24322 152 188 1.2E-20 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13515 f819489935cb9a8db578991728b98c30 254 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 143 245 3.8E-25 T 22-04-2016 PP4_RS13515 f819489935cb9a8db578991728b98c30 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 173 190 2.8E-28 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13515 f819489935cb9a8db578991728b98c30 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 152 171 2.8E-28 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13515 f819489935cb9a8db578991728b98c30 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 3 20 2.8E-28 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13515 f819489935cb9a8db578991728b98c30 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 209 229 2.8E-28 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13515 f819489935cb9a8db578991728b98c30 254 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 61 72 2.8E-28 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13515 f819489935cb9a8db578991728b98c30 254 SUPERFAMILY SSF51735 2 248 2.21E-49 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS13515 f819489935cb9a8db578991728b98c30 254 Pfam PF00106 short chain dehydrogenase 4 121 1.2E-8 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS09780 1cc3223f3d6a00589b85fd1c08ba29b9 607 PANTHER PTHR37291 1 177 5.4E-73 T 22-04-2016 PP4_RS09780 1cc3223f3d6a00589b85fd1c08ba29b9 607 PANTHER PTHR37291 339 607 5.4E-73 T 22-04-2016 PP4_RS09780 1cc3223f3d6a00589b85fd1c08ba29b9 607 SUPERFAMILY SSF52540 4 86 4.15E-11 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS09780 1cc3223f3d6a00589b85fd1c08ba29b9 607 SUPERFAMILY SSF52540 384 470 4.15E-11 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS09780 1cc3223f3d6a00589b85fd1c08ba29b9 607 Pfam PF07728 AAA domain (dynein-related subfamily) 337 463 1.4E-8 T 22-04-2016 IPR011704 ATPase, dynein-related, AAA domain GO:0005524|GO:0016887 PP4_RS09780 1cc3223f3d6a00589b85fd1c08ba29b9 607 Gene3D G3DSA:3.40.50.300 343 465 3.0E-12 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS09780 1cc3223f3d6a00589b85fd1c08ba29b9 607 Gene3D G3DSA:3.40.50.300 4 17 3.0E-12 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS09780 1cc3223f3d6a00589b85fd1c08ba29b9 607 Gene3D G3DSA:3.40.50.300 487 503 6.0E-4 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS09780 1cc3223f3d6a00589b85fd1c08ba29b9 607 Gene3D G3DSA:3.40.50.300 18 58 6.0E-4 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS09780 1cc3223f3d6a00589b85fd1c08ba29b9 607 PANTHER PTHR37291:SF1 1 177 5.4E-73 T 22-04-2016 PP4_RS09780 1cc3223f3d6a00589b85fd1c08ba29b9 607 PANTHER PTHR37291:SF1 339 607 5.4E-73 T 22-04-2016 PP4_RS25580 aea6eae86adf1e12d99753206acd4165 139 TIGRFAM TIGR01837 PHA_granule_1: poly(hydroxyalkanoate) granule-associated protein 18 138 2.6E-47 T 22-04-2016 IPR008769 Poly granule associated PP4_RS25580 aea6eae86adf1e12d99753206acd4165 139 PANTHER PTHR38664 18 138 1.1E-19 T 22-04-2016 PP4_RS25580 aea6eae86adf1e12d99753206acd4165 139 Pfam PF05597 Poly(hydroxyalcanoate) granule associated protein (phasin) 15 136 2.7E-42 T 22-04-2016 IPR008769 Poly granule associated PP4_RS25580 aea6eae86adf1e12d99753206acd4165 139 PANTHER PTHR38664:SF1 18 138 1.1E-19 T 22-04-2016 PP4_RS14460 101061b5d42730898b67a45ecb17ccc4 354 Pfam PF07993 Male sterility protein 7 241 3.2E-26 T 22-04-2016 IPR013120 Male sterility, NAD-binding Reactome: REACT_22258 PP4_RS14460 101061b5d42730898b67a45ecb17ccc4 354 Gene3D G3DSA:3.40.50.720 5 286 9.0E-33 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS14460 101061b5d42730898b67a45ecb17ccc4 354 PANTHER PTHR10366:SF124 4 288 1.7E-26 T 22-04-2016 PP4_RS14460 101061b5d42730898b67a45ecb17ccc4 354 PANTHER PTHR10366:SF124 309 351 1.7E-26 T 22-04-2016 PP4_RS14460 101061b5d42730898b67a45ecb17ccc4 354 PANTHER PTHR10366 4 288 1.7E-26 T 22-04-2016 PP4_RS14460 101061b5d42730898b67a45ecb17ccc4 354 PANTHER PTHR10366 309 351 1.7E-26 T 22-04-2016 PP4_RS14460 101061b5d42730898b67a45ecb17ccc4 354 SUPERFAMILY SSF51735 5 288 1.43E-36 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS24305 ef6ce4cec3925b0e612f8e41e8387ad2 232 SUPERFAMILY SSF46894 163 230 1.26E-17 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS24305 ef6ce4cec3925b0e612f8e41e8387ad2 232 Gene3D G3DSA:1.10.10.10 177 228 9.7E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS24305 ef6ce4cec3925b0e612f8e41e8387ad2 232 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 178 192 8.5E-11 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS24305 ef6ce4cec3925b0e612f8e41e8387ad2 232 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 208 220 8.5E-11 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS24305 ef6ce4cec3925b0e612f8e41e8387ad2 232 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 192 208 8.5E-11 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS24305 ef6ce4cec3925b0e612f8e41e8387ad2 232 SUPERFAMILY SSF55781 6 171 7.55E-5 T 22-04-2016 IPR029016 GAF domain-like PP4_RS24305 ef6ce4cec3925b0e612f8e41e8387ad2 232 Pfam PF00196 Bacterial regulatory proteins, luxR family 177 230 2.3E-17 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS24305 ef6ce4cec3925b0e612f8e41e8387ad2 232 SMART SM00421 175 232 8.1E-18 T 22-04-2016 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 PP4_RS20425 08cdc7211f5603bddab13988738ada28 217 PANTHER PTHR10000 41 213 5.4E-84 T 22-04-2016 PP4_RS20425 08cdc7211f5603bddab13988738ada28 217 SUPERFAMILY SSF56784 2 209 5.65E-31 T 22-04-2016 IPR023214 HAD-like domain PP4_RS20425 08cdc7211f5603bddab13988738ada28 217 Pfam PF12710 haloacid dehalogenase-like hydrolase 4 187 1.8E-33 T 22-04-2016 PP4_RS20425 08cdc7211f5603bddab13988738ada28 217 Gene3D G3DSA:1.20.1440.100 15 80 9.9E-22 T 22-04-2016 PP4_RS20425 08cdc7211f5603bddab13988738ada28 217 Gene3D G3DSA:3.40.50.1000 81 216 1.2E-46 T 22-04-2016 IPR023214 HAD-like domain PP4_RS20425 08cdc7211f5603bddab13988738ada28 217 TIGRFAM TIGR01488 HAD-SF-IB: HAD phosphoserine phosphatase-like hydrolase, family IB 3 189 2.7E-28 T 22-04-2016 IPR006383 HAD-superfamily hydrolase, subfamily IB, PSPase-like GO:0008152|GO:0016791 PP4_RS20425 08cdc7211f5603bddab13988738ada28 217 PANTHER PTHR10000:SF17 41 213 5.4E-84 T 22-04-2016 PP4_RS20425 08cdc7211f5603bddab13988738ada28 217 TIGRFAM TIGR01490 HAD-SF-IB-hyp1: HAD hydrolase, family IB 3 199 9.4E-54 T 22-04-2016 IPR006385 HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial PP4_RS10010 ed39fe2c9545b6008ae630c3e96e7b53 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 14 72 1.4E-14 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS10010 ed39fe2c9545b6008ae630c3e96e7b53 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 50 61 3.7E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS10010 ed39fe2c9545b6008ae630c3e96e7b53 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 50 3.7E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS10010 ed39fe2c9545b6008ae630c3e96e7b53 306 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 40 3.7E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS10010 ed39fe2c9545b6008ae630c3e96e7b53 306 Gene3D G3DSA:1.10.10.10 12 93 6.6E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS10010 ed39fe2c9545b6008ae630c3e96e7b53 306 PANTHER PTHR30126:SF3 11 303 1.9E-61 T 22-04-2016 PP4_RS10010 ed39fe2c9545b6008ae630c3e96e7b53 306 Gene3D G3DSA:3.40.190.10 99 187 6.1E-16 T 22-04-2016 PP4_RS10010 ed39fe2c9545b6008ae630c3e96e7b53 306 Pfam PF03466 LysR substrate binding domain 98 305 5.2E-32 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS10010 ed39fe2c9545b6008ae630c3e96e7b53 306 SUPERFAMILY SSF46785 11 116 4.63E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS10010 ed39fe2c9545b6008ae630c3e96e7b53 306 Gene3D G3DSA:3.40.190.10 188 272 9.9E-13 T 22-04-2016 PP4_RS10010 ed39fe2c9545b6008ae630c3e96e7b53 306 SUPERFAMILY SSF53850 99 304 8.47E-33 T 22-04-2016 PP4_RS10010 ed39fe2c9545b6008ae630c3e96e7b53 306 PANTHER PTHR30126 11 303 1.9E-61 T 22-04-2016 PP4_RS12350 bee3a2d5ccd3f73b14c05c7cbbeafd18 321 PANTHER PTHR30273:SF3 3 321 1.0E-103 T 22-04-2016 PP4_RS12350 bee3a2d5ccd3f73b14c05c7cbbeafd18 321 Pfam PF04773 FecR protein 112 207 1.9E-18 T 22-04-2016 IPR006860 FecR protein PP4_RS12350 bee3a2d5ccd3f73b14c05c7cbbeafd18 321 PANTHER PTHR30273 3 321 1.0E-103 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS12350 bee3a2d5ccd3f73b14c05c7cbbeafd18 321 PIRSF PIRSF018266 1 320 6.3E-95 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS12350 bee3a2d5ccd3f73b14c05c7cbbeafd18 321 Pfam PF16220 Domain of unknown function (DUF4880) 12 52 1.4E-12 T 22-04-2016 IPR032623 FecR, N-terminal PP4_RS16595 149cc605ed01976ddea17f7493ae4fb4 315 Pfam PF16220 Domain of unknown function (DUF4880) 12 54 3.0E-11 T 22-04-2016 IPR032623 FecR, N-terminal PP4_RS16595 149cc605ed01976ddea17f7493ae4fb4 315 PANTHER PTHR30273 4 312 2.0E-71 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS16595 149cc605ed01976ddea17f7493ae4fb4 315 Pfam PF04773 FecR protein 113 198 9.0E-11 T 22-04-2016 IPR006860 FecR protein PP4_RS16595 149cc605ed01976ddea17f7493ae4fb4 315 PANTHER PTHR30273:SF3 4 312 2.0E-71 T 22-04-2016 PP4_RS16595 149cc605ed01976ddea17f7493ae4fb4 315 PIRSF PIRSF018266 1 315 1.8E-67 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS16945 bad706707d8183da92966028068443f4 194 PANTHER PTHR30086:SF12 1 188 3.6E-47 T 22-04-2016 PP4_RS16945 bad706707d8183da92966028068443f4 194 PANTHER PTHR30086 1 188 3.6E-47 T 22-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PP4_RS16945 bad706707d8183da92966028068443f4 194 Pfam PF01810 LysE type translocator 15 188 2.9E-17 T 22-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PP4_RS13280 b6401d4ba9f8738b20d7775cb315b9df 415 SUPERFAMILY SSF51905 380 409 3.88E-54 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS13280 b6401d4ba9f8738b20d7775cb315b9df 415 SUPERFAMILY SSF51905 1 300 3.88E-54 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS13280 b6401d4ba9f8738b20d7775cb315b9df 415 Gene3D G3DSA:3.50.50.60 201 300 1.1E-29 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS13280 b6401d4ba9f8738b20d7775cb315b9df 415 Gene3D G3DSA:3.50.50.60 1 110 1.1E-29 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS13280 b6401d4ba9f8738b20d7775cb315b9df 415 PANTHER PTHR10742:SF275 1 411 1.8E-193 T 22-04-2016 PP4_RS13280 b6401d4ba9f8738b20d7775cb315b9df 415 Pfam PF01593 Flavin containing amine oxidoreductase 10 301 1.7E-22 T 22-04-2016 IPR002937 Amine oxidase GO:0016491|GO:0055114 PP4_RS13280 b6401d4ba9f8738b20d7775cb315b9df 415 PANTHER PTHR10742 1 411 1.8E-193 T 22-04-2016 PP4_RS07860 3afc8ad8e3ccb7b0df9a428380fa399f 463 Pfam PF00202 Aminotransferase class-III 45 459 5.2E-92 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS07860 3afc8ad8e3ccb7b0df9a428380fa399f 463 Gene3D G3DSA:3.40.640.10 81 333 4.3E-70 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS07860 3afc8ad8e3ccb7b0df9a428380fa399f 463 PANTHER PTHR11986:SF7 23 459 1.4E-196 T 22-04-2016 PP4_RS07860 3afc8ad8e3ccb7b0df9a428380fa399f 463 Gene3D G3DSA:3.90.1150.10 334 459 2.0E-50 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS07860 3afc8ad8e3ccb7b0df9a428380fa399f 463 TIGRFAM TIGR00709 dat: 2,4-diaminobutyrate 4-transaminase 28 461 2.5E-171 T 22-04-2016 IPR004637 2,4-diaminobutyrate 4-transaminase GO:0008483|GO:0009058 KEGG: 00260+2.6.1.76|MetaCyc: PWY-6409|MetaCyc: PWY-6562|MetaCyc: PWY-761|UniPathway: UPA00067 PP4_RS07860 3afc8ad8e3ccb7b0df9a428380fa399f 463 SUPERFAMILY SSF53383 35 459 3.93E-119 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS07860 3afc8ad8e3ccb7b0df9a428380fa399f 463 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 269 306 - T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS07860 3afc8ad8e3ccb7b0df9a428380fa399f 463 PANTHER PTHR11986 23 459 1.4E-196 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS21970 372ceabb93b5353bde76514d27990de0 153 SUPERFAMILY SSF48452 9 81 1.61E-6 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS21970 372ceabb93b5353bde76514d27990de0 153 Gene3D G3DSA:1.25.40.10 7 78 1.8E-5 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS12690 06cd268b9600cd01927a2c4e901b4eca 205 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 110 138 - T 22-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 PP4_RS12690 06cd268b9600cd01927a2c4e901b4eca 205 SUPERFAMILY SSF51161 38 153 6.52E-32 T 22-04-2016 IPR011004 Trimeric LpxA-like PP4_RS12690 06cd268b9600cd01927a2c4e901b4eca 205 Gene3D G3DSA:2.160.10.10 43 156 6.7E-31 T 22-04-2016 PP4_RS12690 06cd268b9600cd01927a2c4e901b4eca 205 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 104 136 9.7E-9 T 22-04-2016 IPR001451 Hexapeptide repeat PP4_RS12690 06cd268b9600cd01927a2c4e901b4eca 205 PANTHER PTHR23416 41 152 1.6E-26 T 22-04-2016 PP4_RS14210 86fd9e0db4d70aadc29ce681791d3889 250 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 2 206 9.7E-46 T 22-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 PP4_RS14210 86fd9e0db4d70aadc29ce681791d3889 250 SUPERFAMILY SSF53790 2 237 3.79E-66 T 22-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 PP4_RS14210 86fd9e0db4d70aadc29ce681791d3889 250 Gene3D G3DSA:3.40.1010.10 2 109 4.9E-32 T 22-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 PP4_RS14210 86fd9e0db4d70aadc29ce681791d3889 250 Gene3D G3DSA:3.30.950.10 110 228 2.3E-39 T 22-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 PP4_RS14210 86fd9e0db4d70aadc29ce681791d3889 250 PANTHER PTHR21091:SF17 1 207 4.4E-65 T 22-04-2016 PP4_RS14210 86fd9e0db4d70aadc29ce681791d3889 250 ProSitePatterns PS00839 Uroporphyrin-III C-methyltransferase signature 1. 6 20 - T 22-04-2016 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site GO:0008168|GO:0055114 KEGG: 00270+2.1.1.10|KEGG: 00860+4.99.1.4+1.3.1.76+2.1.1.107|MetaCyc: PWY-5194|MetaCyc: PWY-5441|MetaCyc: PWY-702|MetaCyc: PWY-7377|UniPathway: UPA00148|UniPathway: UPA00148|UniPathway: UPA00262|UniPathway: UPA00262|UniPathway: UPA00262 PP4_RS14210 86fd9e0db4d70aadc29ce681791d3889 250 PANTHER PTHR21091 1 207 4.4E-65 T 22-04-2016 PP4_RS14210 86fd9e0db4d70aadc29ce681791d3889 250 TIGRFAM TIGR01465 cobM_cbiF: precorrin-4 C11-methyltransferase 3 247 1.1E-95 T 22-04-2016 IPR006362 Cobalamin (vitamin B12) biosynthesis CobM/CbiF, precorrin-4 C11-methyltransferase GO:0009236|GO:0046026 PP4_RS05165 945173805e7d63021177db7d5d1a58ea 523 Gene3D G3DSA:3.50.50.60 22 280 4.3E-38 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS05165 945173805e7d63021177db7d5d1a58ea 523 PANTHER PTHR11985 29 522 2.6E-182 T 22-04-2016 PP4_RS05165 945173805e7d63021177db7d5d1a58ea 523 Pfam PF01266 FAD dependent oxidoreductase 30 382 4.4E-47 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PP4_RS05165 945173805e7d63021177db7d5d1a58ea 523 ProSitePatterns PS00978 FAD-dependent glycerol-3-phosphate dehydrogenase signature 2. 376 386 - T 22-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 PP4_RS05165 945173805e7d63021177db7d5d1a58ea 523 PANTHER PTHR11985:SF1 29 522 2.6E-182 T 22-04-2016 PP4_RS05165 945173805e7d63021177db7d5d1a58ea 523 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 337 343 1.5E-29 T 22-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 PP4_RS05165 945173805e7d63021177db7d5d1a58ea 523 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 58 70 1.5E-29 T 22-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 PP4_RS05165 945173805e7d63021177db7d5d1a58ea 523 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 42 52 1.5E-29 T 22-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 PP4_RS05165 945173805e7d63021177db7d5d1a58ea 523 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 29 41 1.5E-29 T 22-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 PP4_RS05165 945173805e7d63021177db7d5d1a58ea 523 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 103 115 1.5E-29 T 22-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 PP4_RS05165 945173805e7d63021177db7d5d1a58ea 523 PRINTS PR01001 FAD-dependent glycerol-3-phosphate dehydrogenase family signature 371 383 1.5E-29 T 22-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 PP4_RS05165 945173805e7d63021177db7d5d1a58ea 523 SUPERFAMILY SSF51905 29 346 3.02E-35 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS05165 945173805e7d63021177db7d5d1a58ea 523 Pfam PF16901 C-terminal domain of alpha-glycerophosphate oxidase 404 510 2.6E-10 T 22-04-2016 IPR031656 Alpha-glycerophosphate oxidase, C-terminal KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 PP4_RS05165 945173805e7d63021177db7d5d1a58ea 523 ProSitePatterns PS00977 FAD-dependent glycerol-3-phosphate dehydrogenase signature 1. 34 51 - T 22-04-2016 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase GO:0004368|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.5.3|MetaCyc: PWY-4261|MetaCyc: PWY-6118|MetaCyc: PWY-6952 PP4_RS11760 43d4b2a5a7829a0cd9862ac32afc4467 239 Pfam PF09694 Bacterial protein of unknown function (Gcw_chp) 54 114 8.2E-9 T 22-04-2016 IPR010239 Conserved hypothetical protein CHP02001 PP4_RS11760 43d4b2a5a7829a0cd9862ac32afc4467 239 TIGRFAM TIGR02001 gcw_chp: conserved hypothetical protein 5 238 5.8E-68 T 22-04-2016 IPR010239 Conserved hypothetical protein CHP02001 PP4_RS11540 7d4a31e30ea47ba6596c1d6854d60437 714 Gene3D G3DSA:1.10.287.950 466 683 4.2E-58 T 22-04-2016 PP4_RS11540 7d4a31e30ea47ba6596c1d6854d60437 714 SMART SM00304 383 437 7.9E-9 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS11540 7d4a31e30ea47ba6596c1d6854d60437 714 SMART SM00283 452 713 2.5E-85 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS11540 7d4a31e30ea47ba6596c1d6854d60437 714 SUPERFAMILY SSF58104 405 714 3.27E-81 T 22-04-2016 PP4_RS11540 7d4a31e30ea47ba6596c1d6854d60437 714 PANTHER PTHR32089:SF34 24 714 1.0E-245 T 22-04-2016 PP4_RS11540 7d4a31e30ea47ba6596c1d6854d60437 714 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 519 712 2.4E-49 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS11540 7d4a31e30ea47ba6596c1d6854d60437 714 Gene3D G3DSA:3.30.450.20 206 349 4.3E-5 T 22-04-2016 PP4_RS11540 7d4a31e30ea47ba6596c1d6854d60437 714 PANTHER PTHR32089 24 714 1.0E-245 T 22-04-2016 PP4_RS11540 7d4a31e30ea47ba6596c1d6854d60437 714 Pfam PF00672 HAMP domain 365 433 1.2E-13 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS18165 d95ee820f334c028f4353563a9f08dfe 469 Gene3D G3DSA:3.40.640.10 142 348 2.3E-27 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS18165 d95ee820f334c028f4353563a9f08dfe 469 SUPERFAMILY SSF53383 86 463 6.91E-55 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS18165 d95ee820f334c028f4353563a9f08dfe 469 SUPERFAMILY SSF46785 8 79 1.84E-14 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS18165 d95ee820f334c028f4353563a9f08dfe 469 Pfam PF00155 Aminotransferase class I and II 141 446 1.0E-15 T 22-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PP4_RS18165 d95ee820f334c028f4353563a9f08dfe 469 PANTHER PTHR11751 85 463 1.1E-33 T 22-04-2016 PP4_RS18165 d95ee820f334c028f4353563a9f08dfe 469 Pfam PF00392 Bacterial regulatory proteins, gntR family 12 75 7.5E-10 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS18165 d95ee820f334c028f4353563a9f08dfe 469 PANTHER PTHR11751:SF314 85 463 1.1E-33 T 22-04-2016 PP4_RS18165 d95ee820f334c028f4353563a9f08dfe 469 Gene3D G3DSA:1.10.10.10 11 77 1.4E-16 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS18165 d95ee820f334c028f4353563a9f08dfe 469 SMART SM00345 16 75 4.0E-9 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS18165 d95ee820f334c028f4353563a9f08dfe 469 Gene3D G3DSA:3.90.1150.10 349 462 2.2E-11 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS06080 68836b42950c9f8eee09e495498bc99f 545 Hamap MF_00212 Probable malate:quinone oxidoreductase [mqo]. 25 515 53.479 T 22-04-2016 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254|UniPathway: UPA00223 PP4_RS06080 68836b42950c9f8eee09e495498bc99f 545 TIGRFAM TIGR01320 mal_quin_oxido: malate dehydrogenase (acceptor) 29 513 9.9E-207 T 22-04-2016 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254|UniPathway: UPA00223 PP4_RS06080 68836b42950c9f8eee09e495498bc99f 545 PANTHER PTHR13847 25 542 3.3E-200 T 22-04-2016 PP4_RS06080 68836b42950c9f8eee09e495498bc99f 545 PANTHER PTHR13847:SF214 25 542 3.3E-200 T 22-04-2016 PP4_RS06080 68836b42950c9f8eee09e495498bc99f 545 SUPERFAMILY SSF51905 24 354 1.01E-23 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS06080 68836b42950c9f8eee09e495498bc99f 545 Pfam PF06039 Malate:quinone oxidoreductase (Mqo) 28 515 1.4E-235 T 22-04-2016 IPR006231 Malate:quinone-oxidoreductase GO:0006099|GO:0008924 KEGG: 00020+1.1.5.4|KEGG: 00620+1.1.5.4|MetaCyc: PWY-7254|UniPathway: UPA00223 PP4_RS06080 68836b42950c9f8eee09e495498bc99f 545 Gene3D G3DSA:3.50.50.60 170 352 1.1E-19 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS06080 68836b42950c9f8eee09e495498bc99f 545 Gene3D G3DSA:3.50.50.60 27 95 1.1E-19 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS24310 7ccf79f745e93983de93fd2873284bf0 489 ProSitePatterns PS00571 Amidases signature. 169 200 - T 22-04-2016 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PP4_RS24310 7ccf79f745e93983de93fd2873284bf0 489 PANTHER PTHR11895 19 488 1.1E-123 T 22-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PP4_RS24310 7ccf79f745e93983de93fd2873284bf0 489 Pfam PF01425 Amidase 37 471 2.7E-101 T 22-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PP4_RS24310 7ccf79f745e93983de93fd2873284bf0 489 SUPERFAMILY SSF75304 10 480 1.57E-114 T 22-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PP4_RS24310 7ccf79f745e93983de93fd2873284bf0 489 Gene3D G3DSA:3.90.1300.10 16 487 4.3E-121 T 22-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PP4_RS03325 55de43ab0377bc100ccf8f2cea9e5a68 249 PANTHER PTHR10108:SF919 1 229 1.1E-20 T 22-04-2016 PP4_RS03325 55de43ab0377bc100ccf8f2cea9e5a68 249 PANTHER PTHR10108 1 229 1.1E-20 T 22-04-2016 PP4_RS03325 55de43ab0377bc100ccf8f2cea9e5a68 249 Gene3D G3DSA:3.40.50.150 34 247 7.9E-28 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS03325 55de43ab0377bc100ccf8f2cea9e5a68 249 Pfam PF13489 Methyltransferase domain 31 158 6.9E-14 T 22-04-2016 PP4_RS03325 55de43ab0377bc100ccf8f2cea9e5a68 249 SUPERFAMILY SSF53335 3 247 4.71E-35 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS24135 6aaf0c2610af6366067ee5c8b497d963 698 SUPERFAMILY SSF56349 438 605 1.71E-7 T 22-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 PP4_RS24135 6aaf0c2610af6366067ee5c8b497d963 698 Gene3D G3DSA:1.10.443.10 443 604 3.8E-4 T 22-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 PP4_RS25045 145831df9cdb0c69e57744e3bcfd4878 180 Pfam PF00929 Exonuclease 8 169 3.3E-34 T 22-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III PP4_RS25045 145831df9cdb0c69e57744e3bcfd4878 180 PANTHER PTHR11046 1 180 3.1E-122 T 22-04-2016 PP4_RS25045 145831df9cdb0c69e57744e3bcfd4878 180 Gene3D G3DSA:3.30.420.10 3 179 3.0E-74 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PP4_RS25045 145831df9cdb0c69e57744e3bcfd4878 180 Hamap MF_00045 Oligoribonuclease [orn]. 2 180 43.566 T 22-04-2016 IPR022894 Oligoribonuclease GO:0016788 PP4_RS25045 145831df9cdb0c69e57744e3bcfd4878 180 PANTHER PTHR11046:SF1 1 180 3.1E-122 T 22-04-2016 PP4_RS25045 145831df9cdb0c69e57744e3bcfd4878 180 SUPERFAMILY SSF53098 1 179 2.97E-48 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PP4_RS25045 145831df9cdb0c69e57744e3bcfd4878 180 SMART SM00479 6 179 3.7E-25 T 22-04-2016 IPR013520 Exonuclease, RNase T/DNA polymerase III PP4_RS26120 ff5fb14d2deeb8628d70382a034ca94e 476 PANTHER PTHR11699:SF15 15 476 4.1E-182 T 22-04-2016 PP4_RS26120 ff5fb14d2deeb8628d70382a034ca94e 476 PIRSF PIRSF036492 4 476 5.0E-160 T 22-04-2016 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent GO:0004030|GO:0006081|GO:0055114 PP4_RS26120 ff5fb14d2deeb8628d70382a034ca94e 476 Gene3D G3DSA:3.40.309.10 238 426 1.5E-52 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PP4_RS26120 ff5fb14d2deeb8628d70382a034ca94e 476 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 222 229 - T 22-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 PP4_RS26120 ff5fb14d2deeb8628d70382a034ca94e 476 PANTHER PTHR11699 15 476 4.1E-182 T 22-04-2016 PP4_RS26120 ff5fb14d2deeb8628d70382a034ca94e 476 SUPERFAMILY SSF53720 9 473 4.19E-122 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS26120 ff5fb14d2deeb8628d70382a034ca94e 476 Pfam PF00171 Aldehyde dehydrogenase family 15 446 6.0E-91 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PP4_RS26120 ff5fb14d2deeb8628d70382a034ca94e 476 Gene3D G3DSA:3.40.605.10 12 237 8.9E-59 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS00180 b5e723f05df72a2b1f817ce16f40e9c9 447 Pfam PF03573 outer membrane porin, OprD family 30 446 4.1E-152 T 22-04-2016 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 PP4_RS00180 b5e723f05df72a2b1f817ce16f40e9c9 447 PANTHER PTHR34596 1 447 4.4E-160 T 22-04-2016 PP4_RS00180 b5e723f05df72a2b1f817ce16f40e9c9 447 Gene3D G3DSA:2.40.160.10 36 447 1.0E-142 T 22-04-2016 IPR023614 Porin domain PP4_RS05160 dbd3b2f51f84ac087c9b6982668e882c 1376 Pfam PF14496 C-terminal novel E3 ligase, LRR-interacting 1097 1318 4.5E-59 T 22-04-2016 IPR029487 Novel E3 ligase domain GO:0004842|GO:0016567 KEGG: 00220+6.3.2.-|KEGG: 00261+6.3.2.-|KEGG: 00380+6.3.2.- PP4_RS05160 dbd3b2f51f84ac087c9b6982668e882c 1376 Gene3D G3DSA:1.20.58.360 1174 1313 9.6E-42 T 22-04-2016 PP4_RS05160 dbd3b2f51f84ac087c9b6982668e882c 1376 PANTHER PTHR23155 897 1019 6.6E-17 T 22-04-2016 PP4_RS05160 dbd3b2f51f84ac087c9b6982668e882c 1376 Gene3D G3DSA:3.80.10.10 887 1068 1.1E-30 T 22-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like PP4_RS05160 dbd3b2f51f84ac087c9b6982668e882c 1376 SUPERFAMILY SSF52058 887 1064 7.57E-24 T 22-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like PP4_RS05160 dbd3b2f51f84ac087c9b6982668e882c 1376 Gene3D G3DSA:1.20.1270.130 1096 1171 3.8E-6 T 22-04-2016 PP4_RS05160 dbd3b2f51f84ac087c9b6982668e882c 1376 SMART SM00369 980 1003 9.7 T 22-04-2016 IPR003591 Leucine-rich repeat, typical subtype PP4_RS05160 dbd3b2f51f84ac087c9b6982668e882c 1376 SMART SM00369 931 954 0.006 T 22-04-2016 IPR003591 Leucine-rich repeat, typical subtype PP4_RS05160 dbd3b2f51f84ac087c9b6982668e882c 1376 Pfam PF13855 Leucine rich repeat 909 967 1.1E-9 T 22-04-2016 IPR001611 Leucine-rich repeat GO:0005515 PP4_RS02060 3fa47e36ba9fd4b9c828806dadc034d7 386 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 27 38 - T 22-04-2016 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.18|MetaCyc: PWY-6823|UniPathway: UPA00344 PP4_RS02060 3fa47e36ba9fd4b9c828806dadc034d7 386 Pfam PF04055 Radical SAM superfamily 27 171 4.0E-21 T 22-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 PP4_RS02060 3fa47e36ba9fd4b9c828806dadc034d7 386 Pfam PF13353 4Fe-4S single cluster domain 28 111 7.7E-7 T 22-04-2016 PP4_RS02060 3fa47e36ba9fd4b9c828806dadc034d7 386 SMART SM00729 21 224 6.3E-4 T 22-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 PP4_RS02060 3fa47e36ba9fd4b9c828806dadc034d7 386 TIGRFAM TIGR02109 PQQ_syn_pqqE: coenzyme PQQ biosynthesis enzyme PqqE 16 376 6.1E-184 T 22-04-2016 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria GO:0018189|GO:0051539 UniPathway: UPA00539 PP4_RS02060 3fa47e36ba9fd4b9c828806dadc034d7 386 PANTHER PTHR11228 15 356 5.4E-111 T 22-04-2016 PP4_RS02060 3fa47e36ba9fd4b9c828806dadc034d7 386 Pfam PF13186 Iron-sulfur cluster-binding domain 254 319 1.6E-8 T 22-04-2016 IPR023885 4Fe4S-binding SPASM domain PP4_RS02060 3fa47e36ba9fd4b9c828806dadc034d7 386 Gene3D G3DSA:3.20.20.70 20 337 6.1E-68 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS02060 3fa47e36ba9fd4b9c828806dadc034d7 386 SUPERFAMILY SSF102114 20 328 1.09E-74 T 22-04-2016 PP4_RS02060 3fa47e36ba9fd4b9c828806dadc034d7 386 PANTHER PTHR11228:SF32 15 356 5.4E-111 T 22-04-2016 PP4_RS02060 3fa47e36ba9fd4b9c828806dadc034d7 386 Hamap MF_00660 Coenzyme PQQ synthesis protein E [pqqE]. 1 386 194.007 T 22-04-2016 IPR011843 Coenzyme PQQ biosynthesis protein E, bacteria GO:0018189|GO:0051539 UniPathway: UPA00539 PP4_RS02060 3fa47e36ba9fd4b9c828806dadc034d7 386 TIGRFAM TIGR04085 rSAM_more_4Fe4S: radical SAM additional 4Fe4S-binding SPASM domain 261 346 1.2E-7 T 22-04-2016 IPR023885 4Fe4S-binding SPASM domain PP4_RS02060 3fa47e36ba9fd4b9c828806dadc034d7 386 PIRSF PIRSF037420 6 368 2.8E-132 T 22-04-2016 IPR017200 Coenzyme PQQ synthesis protein E UniPathway: UPA00539 PP4_RS16455 9becb6aeaf587e1d5b9d71a0033a3e77 257 Gene3D G3DSA:1.10.10.10 1 79 1.9E-27 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16455 9becb6aeaf587e1d5b9d71a0033a3e77 257 SUPERFAMILY SSF53850 80 256 7.6E-11 T 22-04-2016 PP4_RS16455 9becb6aeaf587e1d5b9d71a0033a3e77 257 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 8.6E-11 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16455 9becb6aeaf587e1d5b9d71a0033a3e77 257 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 8.6E-11 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16455 9becb6aeaf587e1d5b9d71a0033a3e77 257 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 8.6E-11 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16455 9becb6aeaf587e1d5b9d71a0033a3e77 257 Gene3D G3DSA:3.40.190.10 187 225 5.3E-5 T 22-04-2016 PP4_RS16455 9becb6aeaf587e1d5b9d71a0033a3e77 257 SUPERFAMILY SSF46785 1 84 1.63E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16455 9becb6aeaf587e1d5b9d71a0033a3e77 257 PANTHER PTHR30346 1 242 1.0E-34 T 22-04-2016 PP4_RS16455 9becb6aeaf587e1d5b9d71a0033a3e77 257 Pfam PF03466 LysR substrate binding domain 187 255 3.1E-8 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS16455 9becb6aeaf587e1d5b9d71a0033a3e77 257 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 4 62 3.8E-20 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS23350 d6dd104bd71b66eb33e8184d7ea85270 320 Gene3D G3DSA:3.10.290.10 18 60 1.8E-7 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 PP4_RS23350 d6dd104bd71b66eb33e8184d7ea85270 320 PANTHER PTHR11079 6 319 1.5E-144 T 22-04-2016 PP4_RS23350 d6dd104bd71b66eb33e8184d7ea85270 320 Pfam PF01479 S4 domain 18 58 1.3E-6 T 22-04-2016 IPR002942 RNA-binding S4 domain GO:0003723 PP4_RS23350 d6dd104bd71b66eb33e8184d7ea85270 320 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 16 309 3.1E-95 T 22-04-2016 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS23350 d6dd104bd71b66eb33e8184d7ea85270 320 SUPERFAMILY SSF55120 75 313 3.24E-82 T 22-04-2016 IPR020103 Pseudouridine synthase, catalytic domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS23350 d6dd104bd71b66eb33e8184d7ea85270 320 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 134 148 - T 22-04-2016 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS23350 d6dd104bd71b66eb33e8184d7ea85270 320 Pfam PF00849 RNA pseudouridylate synthase 91 241 1.2E-33 T 22-04-2016 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 PP4_RS23350 d6dd104bd71b66eb33e8184d7ea85270 320 PANTHER PTHR11079:SF73 6 319 1.5E-144 T 22-04-2016 PP4_RS23350 d6dd104bd71b66eb33e8184d7ea85270 320 SUPERFAMILY SSF55174 17 104 2.69E-7 T 22-04-2016 PP4_RS25695 9a485250c5709042db577dbb9a6b8567 467 Pfam PF00324 Amino acid permease 15 450 5.9E-105 T 22-04-2016 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 PP4_RS25695 9a485250c5709042db577dbb9a6b8567 467 PANTHER PTHR11785 6 451 5.5E-244 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS25695 9a485250c5709042db577dbb9a6b8567 467 PIRSF PIRSF006060 1 461 2.8E-66 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS25695 9a485250c5709042db577dbb9a6b8567 467 PANTHER PTHR11785:SF351 6 451 5.5E-244 T 22-04-2016 PP4_RS25695 9a485250c5709042db577dbb9a6b8567 467 ProSitePatterns PS00218 Amino acid permeases signature. 40 70 - T 22-04-2016 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 PP4_RS14195 d7f579251a92d1f53e6601fc38619e44 62 Pfam PF09489 Probable cobalt transporter subunit (CbtB) 14 62 1.0E-22 T 22-04-2016 IPR012667 Cobalt transporter subunit CbtB, putative PP4_RS14195 d7f579251a92d1f53e6601fc38619e44 62 TIGRFAM TIGR02459 CbtB: cobalt transporter subunit CbtB (proposed) 6 62 4.8E-26 T 22-04-2016 IPR012667 Cobalt transporter subunit CbtB, putative PP4_RS01780 0473a6f926c8d54f500ac29955073739 416 PANTHER PTHR13847:SF44 11 403 4.0E-66 T 22-04-2016 PP4_RS01780 0473a6f926c8d54f500ac29955073739 416 SUPERFAMILY SSF51905 33 254 3.01E-47 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS01780 0473a6f926c8d54f500ac29955073739 416 SUPERFAMILY SSF51905 344 402 3.01E-47 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS01780 0473a6f926c8d54f500ac29955073739 416 TIGRFAM TIGR01373 soxB: sarcosine oxidase, beta subunit family 3 408 2.2E-226 T 22-04-2016 IPR006278 Sarcosine oxidase subunit beta GO:0008115|GO:0046653|GO:0055114 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 PP4_RS01780 0473a6f926c8d54f500ac29955073739 416 Gene3D G3DSA:3.30.9.10 116 174 1.1E-9 T 22-04-2016 PP4_RS01780 0473a6f926c8d54f500ac29955073739 416 Gene3D G3DSA:3.30.9.10 254 341 1.1E-9 T 22-04-2016 PP4_RS01780 0473a6f926c8d54f500ac29955073739 416 Gene3D G3DSA:3.50.50.60 175 253 6.5E-52 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS01780 0473a6f926c8d54f500ac29955073739 416 Gene3D G3DSA:3.50.50.60 18 111 6.5E-52 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS01780 0473a6f926c8d54f500ac29955073739 416 Gene3D G3DSA:3.50.50.60 344 402 6.5E-52 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS01780 0473a6f926c8d54f500ac29955073739 416 PANTHER PTHR13847 11 403 4.0E-66 T 22-04-2016 PP4_RS01780 0473a6f926c8d54f500ac29955073739 416 Pfam PF01266 FAD dependent oxidoreductase 34 380 2.5E-53 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PP4_RS01285 d652d8941fd93b52a68edb85b78b676a 262 SMART SM00382 30 211 4.3E-16 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS01285 d652d8941fd93b52a68edb85b78b676a 262 Pfam PF00005 ABC transporter 21 160 4.2E-27 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS01285 d652d8941fd93b52a68edb85b78b676a 262 PANTHER PTHR24220 5 208 5.8E-110 T 22-04-2016 PP4_RS01285 d652d8941fd93b52a68edb85b78b676a 262 SUPERFAMILY SSF52540 3 216 3.16E-63 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS01285 d652d8941fd93b52a68edb85b78b676a 262 PANTHER PTHR24220:SF564 5 208 5.8E-110 T 22-04-2016 PP4_RS01285 d652d8941fd93b52a68edb85b78b676a 262 Gene3D G3DSA:3.40.50.300 2 218 8.4E-61 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS01285 d652d8941fd93b52a68edb85b78b676a 262 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS24460 0e4e7f5a8a4ba08e948bc65aff10040d 427 SUPERFAMILY SSF53383 2 424 6.7E-133 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS24460 0e4e7f5a8a4ba08e948bc65aff10040d 427 PANTHER PTHR11986:SF5 1 427 5.1E-224 T 22-04-2016 PP4_RS24460 0e4e7f5a8a4ba08e948bc65aff10040d 427 PANTHER PTHR11986 1 427 5.1E-224 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS24460 0e4e7f5a8a4ba08e948bc65aff10040d 427 Gene3D G3DSA:3.40.640.10 70 316 1.4E-82 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS24460 0e4e7f5a8a4ba08e948bc65aff10040d 427 Hamap MF_00375 Glutamate-1-semialdehyde 2,1-aminomutase [hemL]. 3 426 103.82 T 22-04-2016 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188|UniPathway: UPA00251 PP4_RS24460 0e4e7f5a8a4ba08e948bc65aff10040d 427 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 234 270 - T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS24460 0e4e7f5a8a4ba08e948bc65aff10040d 427 Gene3D G3DSA:3.90.1150.10 2 69 9.2E-39 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS24460 0e4e7f5a8a4ba08e948bc65aff10040d 427 Gene3D G3DSA:3.90.1150.10 319 425 9.2E-39 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS24460 0e4e7f5a8a4ba08e948bc65aff10040d 427 TIGRFAM TIGR00713 hemL: glutamate-1-semialdehyde-2,1-aminomutase 4 424 4.9E-187 T 22-04-2016 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase GO:0033014|GO:0042286 KEGG: 00860+5.4.3.8|MetaCyc: PWY-5188|UniPathway: UPA00251 PP4_RS24460 0e4e7f5a8a4ba08e948bc65aff10040d 427 Pfam PF00202 Aminotransferase class-III 33 396 4.4E-73 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS17355 b5fe0f3826770c7bc7bb02110d18af21 382 SUPERFAMILY SSF53187 112 361 2.61E-52 T 22-04-2016 PP4_RS17355 b5fe0f3826770c7bc7bb02110d18af21 382 PANTHER PTHR12756 14 298 5.7E-122 T 22-04-2016 PP4_RS17355 b5fe0f3826770c7bc7bb02110d18af21 382 Gene3D G3DSA:3.40.630.10 104 350 5.1E-39 T 22-04-2016 PP4_RS17355 b5fe0f3826770c7bc7bb02110d18af21 382 SMART SM00631 117 335 0.0052 T 22-04-2016 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 PP4_RS17355 b5fe0f3826770c7bc7bb02110d18af21 382 PANTHER PTHR12756:SF18 14 298 5.7E-122 T 22-04-2016 PP4_RS17355 b5fe0f3826770c7bc7bb02110d18af21 382 Pfam PF00246 Zinc carboxypeptidase 133 239 4.2E-17 T 22-04-2016 IPR000834 Peptidase M14, carboxypeptidase A GO:0004181|GO:0006508|GO:0008270 PP4_RS13485 b1c2f7bf65713c96c98834aa8edeef90 523 Gene3D G3DSA:3.30.450.20 148 281 1.5E-14 T 22-04-2016 PP4_RS13485 b1c2f7bf65713c96c98834aa8edeef90 523 SUPERFAMILY SSF103190 91 176 5.49E-6 T 22-04-2016 IPR029151 Periplasmic sensor domain-like PP4_RS13485 b1c2f7bf65713c96c98834aa8edeef90 523 Pfam PF02743 Cache domain 57 266 1.4E-17 T 22-04-2016 IPR033479 Double Cache domain 1 PP4_RS13485 b1c2f7bf65713c96c98834aa8edeef90 523 Gene3D G3DSA:3.30.70.270 366 517 1.5E-48 T 22-04-2016 PP4_RS13485 b1c2f7bf65713c96c98834aa8edeef90 523 PANTHER PTHR10799 280 347 9.6E-27 T 22-04-2016 PP4_RS13485 b1c2f7bf65713c96c98834aa8edeef90 523 PANTHER PTHR10799 393 515 9.6E-27 T 22-04-2016 PP4_RS13485 b1c2f7bf65713c96c98834aa8edeef90 523 Pfam PF00990 Diguanylate cyclase, GGDEF domain 364 514 9.9E-43 T 22-04-2016 IPR000160 GGDEF domain PP4_RS13485 b1c2f7bf65713c96c98834aa8edeef90 523 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 361 518 1.7E-46 T 22-04-2016 IPR000160 GGDEF domain PP4_RS13485 b1c2f7bf65713c96c98834aa8edeef90 523 SUPERFAMILY SSF103190 195 265 6.28E-6 T 22-04-2016 IPR029151 Periplasmic sensor domain-like PP4_RS13485 b1c2f7bf65713c96c98834aa8edeef90 523 SUPERFAMILY SSF55073 369 517 8.63E-44 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS13485 b1c2f7bf65713c96c98834aa8edeef90 523 PANTHER PTHR10799:SF750 280 347 9.6E-27 T 22-04-2016 PP4_RS13485 b1c2f7bf65713c96c98834aa8edeef90 523 PANTHER PTHR10799:SF750 393 515 9.6E-27 T 22-04-2016 PP4_RS13485 b1c2f7bf65713c96c98834aa8edeef90 523 SMART SM00267 353 518 1.5E-58 T 22-04-2016 IPR000160 GGDEF domain PP4_RS10670 f30fe6d39f4d9dcd8a647b03e66263a6 396 PANTHER PTHR11751 16 386 2.7E-126 T 22-04-2016 PP4_RS10670 f30fe6d39f4d9dcd8a647b03e66263a6 396 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 234 247 - T 22-04-2016 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Reactome: REACT_13 PP4_RS10670 f30fe6d39f4d9dcd8a647b03e66263a6 396 PANTHER PTHR11751:SF301 16 386 2.7E-126 T 22-04-2016 PP4_RS10670 f30fe6d39f4d9dcd8a647b03e66263a6 396 Gene3D G3DSA:3.90.1150.10 256 386 8.9E-36 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS10670 f30fe6d39f4d9dcd8a647b03e66263a6 396 SUPERFAMILY SSF53383 16 388 1.75E-112 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS10670 f30fe6d39f4d9dcd8a647b03e66263a6 396 Gene3D G3DSA:3.40.640.10 47 255 2.7E-71 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS10670 f30fe6d39f4d9dcd8a647b03e66263a6 396 Pfam PF00155 Aminotransferase class I and II 33 382 3.5E-67 T 22-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PP4_RS15410 56a9acb5df26bcecb7d1e942e142715e 154 Pfam PF07681 DoxX 33 120 5.7E-18 T 22-04-2016 IPR032808 DoxX family PP4_RS11460 ae61f167b0447198e33a5a463aca7e6e 439 SUPERFAMILY SSF51905 7 222 2.27E-34 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS11460 ae61f167b0447198e33a5a463aca7e6e 439 PANTHER PTHR23023 5 211 7.2E-59 T 22-04-2016 PP4_RS11460 ae61f167b0447198e33a5a463aca7e6e 439 PANTHER PTHR23023 262 433 7.2E-59 T 22-04-2016 PP4_RS11460 ae61f167b0447198e33a5a463aca7e6e 439 Gene3D G3DSA:3.50.50.60 175 212 2.0E-4 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS11460 ae61f167b0447198e33a5a463aca7e6e 439 Gene3D G3DSA:3.50.50.60 373 432 3.9E-42 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS11460 ae61f167b0447198e33a5a463aca7e6e 439 Gene3D G3DSA:3.50.50.60 5 174 3.9E-42 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS11460 ae61f167b0447198e33a5a463aca7e6e 439 PANTHER PTHR23023:SF4 5 211 7.2E-59 T 22-04-2016 PP4_RS11460 ae61f167b0447198e33a5a463aca7e6e 439 PANTHER PTHR23023:SF4 262 433 7.2E-59 T 22-04-2016 PP4_RS11460 ae61f167b0447198e33a5a463aca7e6e 439 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 129 138 2.0E-10 T 22-04-2016 PP4_RS11460 ae61f167b0447198e33a5a463aca7e6e 439 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 9 31 2.0E-10 T 22-04-2016 PP4_RS11460 ae61f167b0447198e33a5a463aca7e6e 439 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 435 439 2.0E-10 T 22-04-2016 PP4_RS11460 ae61f167b0447198e33a5a463aca7e6e 439 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 169 194 2.0E-10 T 22-04-2016 PP4_RS11460 ae61f167b0447198e33a5a463aca7e6e 439 Pfam PF13738 Pyridine nucleotide-disulphide oxidoreductase 11 198 8.2E-29 T 22-04-2016 PP4_RS07920 5b84be6cde085ffb11ef01db8e83f07f 441 Gene3D G3DSA:1.20.1250.20 244 422 2.2E-11 T 22-04-2016 PP4_RS07920 5b84be6cde085ffb11ef01db8e83f07f 441 Gene3D G3DSA:1.20.1250.20 19 220 2.6E-21 T 22-04-2016 PP4_RS07920 5b84be6cde085ffb11ef01db8e83f07f 441 PANTHER PTHR23508:SF5 11 421 5.5E-151 T 22-04-2016 PP4_RS07920 5b84be6cde085ffb11ef01db8e83f07f 441 ProSitePatterns PS00217 Sugar transport proteins signature 2. 130 155 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PP4_RS07920 5b84be6cde085ffb11ef01db8e83f07f 441 Pfam PF07690 Major Facilitator Superfamily 62 386 5.1E-29 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS07920 5b84be6cde085ffb11ef01db8e83f07f 441 SUPERFAMILY SSF103473 7 424 7.72E-58 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS07920 5b84be6cde085ffb11ef01db8e83f07f 441 PANTHER PTHR23508 11 421 5.5E-151 T 22-04-2016 PP4_RS13540 e043a0c12811b63a33733ea2501b986d 156 Gene3D G3DSA:3.10.129.10 20 132 5.2E-27 T 22-04-2016 IPR029069 HotDog domain PP4_RS13540 e043a0c12811b63a33733ea2501b986d 156 Pfam PF01575 MaoC like domain 22 120 1.6E-21 T 22-04-2016 IPR002539 MaoC-like domain PP4_RS13540 e043a0c12811b63a33733ea2501b986d 156 PANTHER PTHR13078 21 143 7.4E-33 T 22-04-2016 PP4_RS13540 e043a0c12811b63a33733ea2501b986d 156 SUPERFAMILY SSF54637 14 147 1.49E-29 T 22-04-2016 IPR029069 HotDog domain PP4_RS00515 dd213ee5d8237c638ea2c01e30786dc0 256 Gene3D G3DSA:3.40.190.10 19 148 1.4E-56 T 22-04-2016 PP4_RS00515 dd213ee5d8237c638ea2c01e30786dc0 256 SUPERFAMILY SSF53850 20 256 1.47E-86 T 22-04-2016 PP4_RS00515 dd213ee5d8237c638ea2c01e30786dc0 256 PANTHER PTHR30429 1 256 2.2E-140 T 22-04-2016 IPR004872 Lipoprotein NlpA family PP4_RS00515 dd213ee5d8237c638ea2c01e30786dc0 256 PIRSF PIRSF002854 1 256 1.2E-104 T 22-04-2016 IPR004872 Lipoprotein NlpA family PP4_RS00515 dd213ee5d8237c638ea2c01e30786dc0 256 PANTHER PTHR30429:SF0 1 256 2.2E-140 T 22-04-2016 PP4_RS00515 dd213ee5d8237c638ea2c01e30786dc0 256 TIGRFAM TIGR00363 TIGR00363: lipoprotein, YaeC family 42 255 1.7E-68 T 22-04-2016 IPR004872 Lipoprotein NlpA family PP4_RS00515 dd213ee5d8237c638ea2c01e30786dc0 256 Pfam PF03180 NLPA lipoprotein 21 256 6.7E-100 T 22-04-2016 IPR004872 Lipoprotein NlpA family PP4_RS26175 9e9c89e10eb0d7cfacae1d8d9b548538 171 Gene3D G3DSA:3.40.430.10 3 170 8.0E-58 T 22-04-2016 IPR024072 Dihydrofolate reductase-like domain PP4_RS26175 9e9c89e10eb0d7cfacae1d8d9b548538 171 PANTHER PTHR22778 1 170 2.9E-48 T 22-04-2016 PP4_RS26175 9e9c89e10eb0d7cfacae1d8d9b548538 171 PANTHER PTHR22778:SF16 1 170 2.9E-48 T 22-04-2016 PP4_RS26175 9e9c89e10eb0d7cfacae1d8d9b548538 171 SUPERFAMILY SSF53597 6 170 4.58E-57 T 22-04-2016 IPR024072 Dihydrofolate reductase-like domain PP4_RS26175 9e9c89e10eb0d7cfacae1d8d9b548538 171 PIRSF PIRSF000194 1 171 5.1E-58 T 22-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 PP4_RS26175 9e9c89e10eb0d7cfacae1d8d9b548538 171 Pfam PF00186 Dihydrofolate reductase 7 168 3.6E-53 T 22-04-2016 IPR001796 Dihydrofolate reductase domain GO:0004146|GO:0006545|GO:0009165|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 PP4_RS26175 9e9c89e10eb0d7cfacae1d8d9b548538 171 PRINTS PR00070 Dihydrofolate reductase signature 102 116 9.4E-15 T 22-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 PP4_RS26175 9e9c89e10eb0d7cfacae1d8d9b548538 171 PRINTS PR00070 Dihydrofolate reductase signature 32 40 9.4E-15 T 22-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 PP4_RS26175 9e9c89e10eb0d7cfacae1d8d9b548538 171 PRINTS PR00070 Dihydrofolate reductase signature 18 28 9.4E-15 T 22-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 PP4_RS26175 9e9c89e10eb0d7cfacae1d8d9b548538 171 PRINTS PR00070 Dihydrofolate reductase signature 45 56 9.4E-15 T 22-04-2016 IPR012259 Dihydrofolate reductase GO:0004146|GO:0006545|GO:0009165|GO:0050661|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 PP4_RS26175 9e9c89e10eb0d7cfacae1d8d9b548538 171 ProSitePatterns PS00075 Dihydrofolate reductase (DHFR) domain signature. 18 40 - T 22-04-2016 IPR017925 Dihydrofolate reductase conserved site GO:0004146|GO:0055114 KEGG: 00670+1.5.1.3|KEGG: 00790+1.5.1.3|MetaCyc: PWY-3841|MetaCyc: PWY-6614|UniPathway: UPA00077 PP4_RS21890 64717d8f9a1e334f825358ad6e69ed60 215 Gene3D G3DSA:3.10.450.50 25 69 3.9E-21 T 22-04-2016 IPR032710 NTF2-like domain PP4_RS21890 64717d8f9a1e334f825358ad6e69ed60 215 Gene3D G3DSA:3.10.450.50 114 167 3.9E-21 T 22-04-2016 IPR032710 NTF2-like domain PP4_RS21890 64717d8f9a1e334f825358ad6e69ed60 215 Gene3D G3DSA:1.10.10.640 168 205 8.1E-20 T 22-04-2016 IPR023094 Toluene tolerance protein, alpha-helical PP4_RS21890 64717d8f9a1e334f825358ad6e69ed60 215 Gene3D G3DSA:1.10.10.640 70 111 8.1E-20 T 22-04-2016 IPR023094 Toluene tolerance protein, alpha-helical PP4_RS21890 64717d8f9a1e334f825358ad6e69ed60 215 PANTHER PTHR36573 1 210 1.5E-63 T 22-04-2016 PP4_RS21890 64717d8f9a1e334f825358ad6e69ed60 215 Pfam PF05494 MlaC protein 33 195 1.3E-39 T 22-04-2016 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC PP4_RS21890 64717d8f9a1e334f825358ad6e69ed60 215 PIRSF PIRSF004649 1 209 1.5E-62 T 22-04-2016 IPR008869 Toluene tolerance Ttg2/phospholipid-binding protein MlaC PP4_RS18710 ee686ccd6378a6f6ded56ea6e6a08287 641 Gene3D G3DSA:1.10.530.10 472 633 4.1E-51 T 22-04-2016 PP4_RS18710 ee686ccd6378a6f6ded56ea6e6a08287 641 SUPERFAMILY SSF48435 25 474 1.09E-128 T 22-04-2016 IPR016026 Lytic transglycosylase, superhelical U-shaped and linker domain GO:0004553|GO:0042597 PP4_RS18710 ee686ccd6378a6f6ded56ea6e6a08287 641 PANTHER PTHR21666:SF184 460 641 8.8E-50 T 22-04-2016 PP4_RS18710 ee686ccd6378a6f6ded56ea6e6a08287 641 Gene3D G3DSA:1.25.20.10 25 384 7.6E-104 T 22-04-2016 IPR008939 Lytic transglycosylase, superhelical U-shaped GO:0004553|GO:0042597 PP4_RS18710 ee686ccd6378a6f6ded56ea6e6a08287 641 PANTHER PTHR21666 460 641 8.8E-50 T 22-04-2016 PP4_RS18710 ee686ccd6378a6f6ded56ea6e6a08287 641 Pfam PF14718 Soluble lytic murein transglycosylase L domain 403 469 1.3E-17 T 22-04-2016 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 PP4_RS18710 ee686ccd6378a6f6ded56ea6e6a08287 641 Pfam PF01464 Transglycosylase SLT domain 485 594 9.6E-30 T 22-04-2016 IPR008258 Transglycosylase SLT domain 1 PP4_RS18710 ee686ccd6378a6f6ded56ea6e6a08287 641 SUPERFAMILY SSF53955 476 635 1.07E-46 T 22-04-2016 IPR023346 Lysozyme-like domain PP4_RS18710 ee686ccd6378a6f6ded56ea6e6a08287 641 Gene3D G3DSA:1.10.1240.20 402 469 2.7E-17 T 22-04-2016 IPR012289 Lytic transglycosylase, superhelical linker GO:0004553|GO:0042597 PP4_RS19370 fdf2ed4591b23a3794da0cd8f074063f 144 SUPERFAMILY SSF54637 3 141 6.23E-39 T 22-04-2016 IPR029069 HotDog domain PP4_RS19370 fdf2ed4591b23a3794da0cd8f074063f 144 Gene3D G3DSA:3.10.129.10 4 138 3.2E-34 T 22-04-2016 IPR029069 HotDog domain PP4_RS19370 fdf2ed4591b23a3794da0cd8f074063f 144 Pfam PF13279 Thioesterase-like superfamily 16 134 2.1E-11 T 22-04-2016 PP4_RS19370 fdf2ed4591b23a3794da0cd8f074063f 144 PANTHER PTHR31793 8 135 3.2E-70 T 22-04-2016 PP4_RS19370 fdf2ed4591b23a3794da0cd8f074063f 144 PANTHER PTHR31793:SF6 8 135 3.2E-70 T 22-04-2016 PP4_RS26730 9a5e2e6fb315df55ae878462ce9c62c9 231 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 74 199 6.8E-11 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PP4_RS26730 9a5e2e6fb315df55ae878462ce9c62c9 231 PANTHER PTHR12725:SF65 1 229 3.1E-61 T 22-04-2016 PP4_RS26730 9a5e2e6fb315df55ae878462ce9c62c9 231 Pfam PF13419 Haloacid dehalogenase-like hydrolase 6 199 1.1E-22 T 22-04-2016 IPR023214 HAD-like domain PP4_RS26730 9a5e2e6fb315df55ae878462ce9c62c9 231 Gene3D G3DSA:3.40.50.1000 2 225 8.7E-41 T 22-04-2016 IPR023214 HAD-like domain PP4_RS26730 9a5e2e6fb315df55ae878462ce9c62c9 231 SUPERFAMILY SSF56784 3 229 1.01E-45 T 22-04-2016 IPR023214 HAD-like domain PP4_RS26730 9a5e2e6fb315df55ae878462ce9c62c9 231 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 91 194 6.9E-12 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PP4_RS26730 9a5e2e6fb315df55ae878462ce9c62c9 231 PANTHER PTHR12725 1 229 3.1E-61 T 22-04-2016 PP4_RS20890 41835c1dced726897a2227eeb7cd2abe 335 Hamap MF_00959 RNA polymerase sigma factor RpoS [rpoS]. 2 334 40.254 T 22-04-2016 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS20890 41835c1dced726897a2227eeb7cd2abe 335 Gene3D G3DSA:1.10.601.10 43 169 4.0E-58 T 22-04-2016 PP4_RS20890 41835c1dced726897a2227eeb7cd2abe 335 Pfam PF00140 Sigma-70 factor, region 1.2 62 94 9.1E-12 T 22-04-2016 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS20890 41835c1dced726897a2227eeb7cd2abe 335 SUPERFAMILY SSF88659 231 328 1.74E-23 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS20890 41835c1dced726897a2227eeb7cd2abe 335 SUPERFAMILY SSF88659 173 247 4.01E-14 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS20890 41835c1dced726897a2227eeb7cd2abe 335 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 97 323 2.1E-34 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS20890 41835c1dced726897a2227eeb7cd2abe 335 Gene3D G3DSA:1.10.10.10 263 329 6.7E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS20890 41835c1dced726897a2227eeb7cd2abe 335 Pfam PF04542 Sigma-70 region 2 100 169 6.8E-22 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS20890 41835c1dced726897a2227eeb7cd2abe 335 PRINTS PR00046 Major sigma-70 factor signature 293 308 2.1E-26 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS20890 41835c1dced726897a2227eeb7cd2abe 335 PRINTS PR00046 Major sigma-70 factor signature 308 319 2.1E-26 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS20890 41835c1dced726897a2227eeb7cd2abe 335 PRINTS PR00046 Major sigma-70 factor signature 272 284 2.1E-26 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS20890 41835c1dced726897a2227eeb7cd2abe 335 PRINTS PR00046 Major sigma-70 factor signature 148 156 2.1E-26 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS20890 41835c1dced726897a2227eeb7cd2abe 335 PRINTS PR00046 Major sigma-70 factor signature 124 137 2.1E-26 T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS20890 41835c1dced726897a2227eeb7cd2abe 335 Gene3D G3DSA:1.10.10.10 173 222 1.2E-14 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS20890 41835c1dced726897a2227eeb7cd2abe 335 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 124 137 - T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS20890 41835c1dced726897a2227eeb7cd2abe 335 PANTHER PTHR30603 30 335 1.4E-180 T 22-04-2016 PP4_RS20890 41835c1dced726897a2227eeb7cd2abe 335 SUPERFAMILY SSF88946 62 170 1.23E-44 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS20890 41835c1dced726897a2227eeb7cd2abe 335 PANTHER PTHR30603:SF15 30 335 1.4E-180 T 22-04-2016 PP4_RS20890 41835c1dced726897a2227eeb7cd2abe 335 Pfam PF04545 Sigma-70, region 4 268 321 7.1E-15 T 22-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS20890 41835c1dced726897a2227eeb7cd2abe 335 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 293 319 - T 22-04-2016 IPR000943 RNA polymerase sigma-70 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS20890 41835c1dced726897a2227eeb7cd2abe 335 TIGRFAM TIGR02394 rpoS_proteo: RNA polymerase sigma factor RpoS 57 334 3.4E-138 T 22-04-2016 IPR012761 RNA polymerase sigma factor RpoS GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS20890 41835c1dced726897a2227eeb7cd2abe 335 Pfam PF04539 Sigma-70 region 3 180 254 8.0E-21 T 22-04-2016 IPR007624 RNA polymerase sigma-70 region 3 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS05885 dd130fb5f65601bd0869a97159df9ffc 248 PANTHER PTHR12532 1 241 1.2E-118 T 22-04-2016 IPR002876 Transcriptional regulator TACO1-like PP4_RS05885 dd130fb5f65601bd0869a97159df9ffc 248 Gene3D G3DSA:3.30.70.980 135 205 7.8E-29 T 22-04-2016 IPR026564 Transcriptional regulator TACO1-like, domain 3 PP4_RS05885 dd130fb5f65601bd0869a97159df9ffc 248 Gene3D G3DSA:1.10.10.200 1 79 3.1E-35 T 22-04-2016 IPR017856 Integrase, N-terminal zinc-binding domain-like PP4_RS05885 dd130fb5f65601bd0869a97159df9ffc 248 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 239 37.2 T 22-04-2016 IPR002876 Transcriptional regulator TACO1-like PP4_RS05885 dd130fb5f65601bd0869a97159df9ffc 248 SUPERFAMILY SSF75625 3 246 3.01E-99 T 22-04-2016 IPR029072 YebC-like PP4_RS05885 dd130fb5f65601bd0869a97159df9ffc 248 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 1 237 2.0E-101 T 22-04-2016 IPR002876 Transcriptional regulator TACO1-like PP4_RS05885 dd130fb5f65601bd0869a97159df9ffc 248 Gene3D G3DSA:3.30.1270.10 83 134 2.7E-42 T 22-04-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 PP4_RS05885 dd130fb5f65601bd0869a97159df9ffc 248 Gene3D G3DSA:3.30.1270.10 212 247 2.7E-42 T 22-04-2016 IPR026563 Transcriptional regulator TACO1-like, domain 2 PP4_RS05885 dd130fb5f65601bd0869a97159df9ffc 248 Pfam PF01709 Transcriptional regulator 5 237 1.9E-94 T 22-04-2016 IPR002876 Transcriptional regulator TACO1-like PP4_RS02195 0d867d7eeff3fd08f7a9907d68f2c97c 126 SUPERFAMILY SSF110069 8 126 1.02E-46 T 22-04-2016 IPR007474 ApaG domain PP4_RS02195 0d867d7eeff3fd08f7a9907d68f2c97c 126 PANTHER PTHR14289 8 123 3.7E-47 T 22-04-2016 PP4_RS02195 0d867d7eeff3fd08f7a9907d68f2c97c 126 Gene3D G3DSA:2.60.40.1470 8 125 2.6E-44 T 22-04-2016 IPR007474 ApaG domain PP4_RS02195 0d867d7eeff3fd08f7a9907d68f2c97c 126 Pfam PF04379 Protein of unknown function (DUF525) 19 102 9.8E-33 T 22-04-2016 IPR007474 ApaG domain PP4_RS02195 0d867d7eeff3fd08f7a9907d68f2c97c 126 Hamap MF_00791 Protein ApaG [apaG]. 1 126 33.547 T 22-04-2016 IPR023065 Uncharacterised protein family ApaG PP4_RS10460 3765a890c41a080929831c7370bf8e52 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 18 31 5.0E-9 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS10460 3765a890c41a080929831c7370bf8e52 196 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 39 62 5.0E-9 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS10460 3765a890c41a080929831c7370bf8e52 196 SUPERFAMILY SSF46689 10 86 9.23E-16 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS10460 3765a890c41a080929831c7370bf8e52 196 PANTHER PTHR30055 15 187 8.7E-22 T 22-04-2016 PP4_RS10460 3765a890c41a080929831c7370bf8e52 196 Gene3D G3DSA:1.10.357.10 12 186 7.4E-33 T 22-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PP4_RS10460 3765a890c41a080929831c7370bf8e52 196 Pfam PF00440 Bacterial regulatory proteins, tetR family 18 64 9.4E-13 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS23400 4fdf2f33ecfe7f5aa506b4493eb80345 145 Gene3D G3DSA:3.10.50.40 5 83 1.2E-23 T 22-04-2016 PP4_RS23400 4fdf2f33ecfe7f5aa506b4493eb80345 145 Gene3D G3DSA:3.10.50.40 129 143 1.2E-23 T 22-04-2016 PP4_RS23400 4fdf2f33ecfe7f5aa506b4493eb80345 145 SUPERFAMILY SSF54534 7 143 1.73E-39 T 22-04-2016 PP4_RS23400 4fdf2f33ecfe7f5aa506b4493eb80345 145 PANTHER PTHR10516:SF329 1 79 1.6E-20 T 22-04-2016 PP4_RS23400 4fdf2f33ecfe7f5aa506b4493eb80345 145 PANTHER PTHR10516:SF329 132 142 1.6E-20 T 22-04-2016 PP4_RS23400 4fdf2f33ecfe7f5aa506b4493eb80345 145 PANTHER PTHR10516 1 79 1.6E-20 T 22-04-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type PP4_RS23400 4fdf2f33ecfe7f5aa506b4493eb80345 145 PANTHER PTHR10516 132 142 1.6E-20 T 22-04-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type PP4_RS23400 4fdf2f33ecfe7f5aa506b4493eb80345 145 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 8 140 2.6E-20 T 22-04-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 PP4_RS06705 a71cf65067341888feb161886158986a 185 PANTHER PTHR23026 1 172 3.3E-70 T 22-04-2016 PP4_RS06705 a71cf65067341888feb161886158986a 185 PANTHER PTHR23026:SF107 1 172 3.3E-70 T 22-04-2016 PP4_RS06705 a71cf65067341888feb161886158986a 185 SUPERFAMILY SSF55469 1 181 5.5E-41 T 22-04-2016 IPR000415 Nitroreductase-like GO:0016491 PP4_RS06705 a71cf65067341888feb161886158986a 185 Pfam PF00881 Nitroreductase family 8 162 1.6E-23 T 22-04-2016 IPR029479 Nitroreductase PP4_RS06705 a71cf65067341888feb161886158986a 185 PIRSF PIRSF000232 1 185 5.3E-65 T 22-04-2016 IPR026021 Putative NAD(P)H nitroreductase YdjA-like KEGG: 00231+1.-.-.-|KEGG: 00592+1.-.-.-|KEGG: 00633+1.-.-.-|KEGG: 00780+1.-.-.-|KEGG: 00860+1.-.-.-|KEGG: 00950+1.-.-.-|KEGG: 00981+1.-.-.- PP4_RS06705 a71cf65067341888feb161886158986a 185 Gene3D G3DSA:3.40.109.10 1 183 1.4E-40 T 22-04-2016 IPR000415 Nitroreductase-like GO:0016491 PP4_RS24725 e178f6ba3984ae719202f01f8779700c 129 Pfam PF11162 Protein of unknown function (DUF2946) 8 127 3.2E-9 T 22-04-2016 IPR021333 Protein of unknown function DUF2946 PP4_RS10830 ad22be48a28cf5094caa271981612996 457 Gene3D G3DSA:3.40.50.450 127 455 2.8E-117 T 22-04-2016 PP4_RS10830 ad22be48a28cf5094caa271981612996 457 Pfam PF03641 Possible lysine decarboxylase 192 331 1.4E-29 T 22-04-2016 IPR031100 LOG family PP4_RS10830 ad22be48a28cf5094caa271981612996 457 Pfam PF11892 Domain of unknown function (DUF3412) 335 456 3.7E-54 T 22-04-2016 IPR021826 Protein of unknown function DUF3412 PP4_RS10830 ad22be48a28cf5094caa271981612996 457 Gene3D G3DSA:3.30.1850.10 7 119 6.7E-49 T 22-04-2016 IPR027820 Domain of unknown function DUF4478 PP4_RS10830 ad22be48a28cf5094caa271981612996 457 Pfam PF14793 Domain of unknown function (DUF4478) 10 116 2.3E-43 T 22-04-2016 IPR027820 Domain of unknown function DUF4478 PP4_RS10830 ad22be48a28cf5094caa271981612996 457 PANTHER PTHR31223 89 344 2.3E-165 T 22-04-2016 PP4_RS10830 ad22be48a28cf5094caa271981612996 457 PANTHER PTHR31223 361 386 2.3E-165 T 22-04-2016 PP4_RS10830 ad22be48a28cf5094caa271981612996 457 SUPERFAMILY SSF102405 122 332 3.51E-41 T 22-04-2016 PP4_RS10830 ad22be48a28cf5094caa271981612996 457 PANTHER PTHR31223:SF12 89 344 2.3E-165 T 22-04-2016 PP4_RS10830 ad22be48a28cf5094caa271981612996 457 PANTHER PTHR31223:SF12 361 386 2.3E-165 T 22-04-2016 PP4_RS07435 afb6f26856c53633e81bc32852bbe948 397 PANTHER PTHR13847 109 396 1.1E-58 T 22-04-2016 PP4_RS07435 afb6f26856c53633e81bc32852bbe948 397 PANTHER PTHR13847 1 65 1.1E-58 T 22-04-2016 PP4_RS07435 afb6f26856c53633e81bc32852bbe948 397 PANTHER PTHR13847:SF148 109 396 1.1E-58 T 22-04-2016 PP4_RS07435 afb6f26856c53633e81bc32852bbe948 397 PANTHER PTHR13847:SF148 1 65 1.1E-58 T 22-04-2016 PP4_RS07435 afb6f26856c53633e81bc32852bbe948 397 Gene3D G3DSA:3.30.9.10 141 186 1.4E-7 T 22-04-2016 PP4_RS07435 afb6f26856c53633e81bc32852bbe948 397 Gene3D G3DSA:3.30.9.10 267 356 1.4E-7 T 22-04-2016 PP4_RS07435 afb6f26856c53633e81bc32852bbe948 397 Pfam PF01266 FAD dependent oxidoreductase 5 395 2.7E-54 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PP4_RS07435 afb6f26856c53633e81bc32852bbe948 397 Gene3D G3DSA:3.50.50.60 110 124 8.0E-33 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS07435 afb6f26856c53633e81bc32852bbe948 397 Gene3D G3DSA:3.50.50.60 2 57 8.0E-33 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS07435 afb6f26856c53633e81bc32852bbe948 397 Gene3D G3DSA:3.50.50.60 187 266 8.0E-33 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS07435 afb6f26856c53633e81bc32852bbe948 397 Gene3D G3DSA:3.50.50.60 357 396 8.0E-33 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS07435 afb6f26856c53633e81bc32852bbe948 397 SUPERFAMILY SSF54373 267 357 5.62E-12 T 22-04-2016 PP4_RS07435 afb6f26856c53633e81bc32852bbe948 397 SUPERFAMILY SSF51905 357 396 2.72E-34 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS07435 afb6f26856c53633e81bc32852bbe948 397 SUPERFAMILY SSF51905 4 56 2.72E-34 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS07435 afb6f26856c53633e81bc32852bbe948 397 SUPERFAMILY SSF51905 109 269 2.72E-34 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS15335 de256897188dc4a23250df561509f540 319 PANTHER PTHR34697 1 296 2.0E-34 T 22-04-2016 PP4_RS15335 de256897188dc4a23250df561509f540 319 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 20 293 2.8E-10 T 22-04-2016 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD PP4_RS15335 de256897188dc4a23250df561509f540 319 PANTHER PTHR34697:SF2 1 296 2.0E-34 T 22-04-2016 PP4_RS24760 ebaabbab8d4fa7c335aab8abcece346e 495 TIGRFAM TIGR03409 urea_trans_UrtB: urea ABC transporter, permease protein UrtB 201 492 3.8E-131 T 22-04-2016 IPR017779 ABC transporter, urea permease protein UrtB, bacterial-type PP4_RS24760 ebaabbab8d4fa7c335aab8abcece346e 495 Gene3D G3DSA:1.25.10.10 89 192 1.4E-4 T 22-04-2016 IPR011989 Armadillo-like helical PP4_RS24760 ebaabbab8d4fa7c335aab8abcece346e 495 PANTHER PTHR11795 1 495 2.9E-174 T 22-04-2016 PP4_RS24760 ebaabbab8d4fa7c335aab8abcece346e 495 PANTHER PTHR11795:SF349 1 495 2.9E-174 T 22-04-2016 PP4_RS24760 ebaabbab8d4fa7c335aab8abcece346e 495 SUPERFAMILY SSF48371 85 201 7.87E-7 T 22-04-2016 IPR016024 Armadillo-type fold GO:0005488 PP4_RS24760 ebaabbab8d4fa7c335aab8abcece346e 495 Pfam PF02653 Branched-chain amino acid transport system / permease component 203 478 2.8E-52 T 22-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 PP4_RS08990 95384b99badba75d35c957359ba2efaf 213 SMART SM00882 10 206 3.6E-66 T 22-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 PP4_RS08990 95384b99badba75d35c957359ba2efaf 213 Pfam PF01144 Coenzyme A transferase 11 188 1.4E-38 T 22-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 PP4_RS08990 95384b99badba75d35c957359ba2efaf 213 SUPERFAMILY SSF100950 9 212 1.64E-61 T 22-04-2016 PP4_RS08990 95384b99badba75d35c957359ba2efaf 213 ProSitePatterns PS01274 Coenzyme A transferases signature 2. 47 55 - T 22-04-2016 IPR004164 Coenzyme A transferase active site GO:0008152|GO:0008410 PP4_RS08990 95384b99badba75d35c957359ba2efaf 213 PANTHER PTHR13707 9 194 8.2E-82 T 22-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 PP4_RS08990 95384b99badba75d35c957359ba2efaf 213 Gene3D G3DSA:3.40.810.20 9 211 1.2E-76 T 22-04-2016 PP4_RS08990 95384b99badba75d35c957359ba2efaf 213 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 8 211 5.7E-89 T 22-04-2016 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 PP4_RS04870 749ba4cf91874e66a9efd6fc487a4e1e 568 TIGRFAM TIGR00815 sulP: sulfate permease 8 547 3.9E-128 T 22-04-2016 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 Reactome: REACT_15518 PP4_RS04870 749ba4cf91874e66a9efd6fc487a4e1e 568 PANTHER PTHR11814 2 545 2.6E-168 T 22-04-2016 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 Reactome: REACT_15518 PP4_RS04870 749ba4cf91874e66a9efd6fc487a4e1e 568 Pfam PF01740 STAS domain 440 545 1.3E-19 T 22-04-2016 IPR002645 STAS domain PP4_RS04870 749ba4cf91874e66a9efd6fc487a4e1e 568 Pfam PF00916 Sulfate permease family 21 388 1.4E-91 T 22-04-2016 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 PP4_RS04870 749ba4cf91874e66a9efd6fc487a4e1e 568 SUPERFAMILY SSF52091 443 551 7.06E-15 T 22-04-2016 IPR002645 STAS domain PP4_RS04870 749ba4cf91874e66a9efd6fc487a4e1e 568 Gene3D G3DSA:3.30.750.24 443 546 1.4E-15 T 22-04-2016 IPR002645 STAS domain PP4_RS07310 6d44e2f53f97737d5fc8711bfc46c6de 374 SUPERFAMILY SSF52738 188 372 1.57E-63 T 22-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 PP4_RS07310 6d44e2f53f97737d5fc8711bfc46c6de 374 SUPERFAMILY SSF52172 3 109 7.97E-28 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS07310 6d44e2f53f97737d5fc8711bfc46c6de 374 PANTHER PTHR24421 1 369 6.1E-171 T 22-04-2016 PP4_RS07310 6d44e2f53f97737d5fc8711bfc46c6de 374 Pfam PF00072 Response regulator receiver domain 5 109 5.8E-22 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS07310 6d44e2f53f97737d5fc8711bfc46c6de 374 PANTHER PTHR24421:SF16 1 369 6.1E-171 T 22-04-2016 PP4_RS07310 6d44e2f53f97737d5fc8711bfc46c6de 374 PIRSF PIRSF000876 1 374 4.0E-133 T 22-04-2016 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 PP4_RS07310 6d44e2f53f97737d5fc8711bfc46c6de 374 Pfam PF01339 CheB methylesterase 193 369 5.8E-58 T 22-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 PP4_RS07310 6d44e2f53f97737d5fc8711bfc46c6de 374 SMART SM00448 3 122 1.1E-24 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS07310 6d44e2f53f97737d5fc8711bfc46c6de 374 Gene3D G3DSA:3.40.50.180 186 373 1.1E-73 T 22-04-2016 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 PP4_RS07310 6d44e2f53f97737d5fc8711bfc46c6de 374 Hamap MF_00099 Chemotaxis response regulator protein-glutamate methylesterase [cheB]. 3 374 39.624 T 22-04-2016 IPR008248 Signal transduction response regulator, chemotaxis, CheB GO:0000156|GO:0000160|GO:0005737|GO:0006935|GO:0008984 PP4_RS07310 6d44e2f53f97737d5fc8711bfc46c6de 374 Gene3D G3DSA:3.40.50.2300 3 109 5.0E-29 T 22-04-2016 PP4_RS26820 03d7c1ea27f42293e32e69b298e1ebfd 296 SUPERFAMILY SSF46785 7 82 1.03E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS26820 03d7c1ea27f42293e32e69b298e1ebfd 296 PANTHER PTHR30537 1 295 1.7E-126 T 22-04-2016 PP4_RS26820 03d7c1ea27f42293e32e69b298e1ebfd 296 SUPERFAMILY SSF53850 94 295 1.23E-38 T 22-04-2016 PP4_RS26820 03d7c1ea27f42293e32e69b298e1ebfd 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 67 5.0E-21 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS26820 03d7c1ea27f42293e32e69b298e1ebfd 296 Pfam PF03466 LysR substrate binding domain 94 294 1.0E-36 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS26820 03d7c1ea27f42293e32e69b298e1ebfd 296 Gene3D G3DSA:3.40.190.10 98 179 4.4E-27 T 22-04-2016 PP4_RS26820 03d7c1ea27f42293e32e69b298e1ebfd 296 Gene3D G3DSA:3.40.190.10 180 264 2.4E-36 T 22-04-2016 PP4_RS26820 03d7c1ea27f42293e32e69b298e1ebfd 296 PANTHER PTHR30537:SF15 1 295 1.7E-126 T 22-04-2016 PP4_RS26820 03d7c1ea27f42293e32e69b298e1ebfd 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 2.6E-9 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS26820 03d7c1ea27f42293e32e69b298e1ebfd 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 2.6E-9 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS26820 03d7c1ea27f42293e32e69b298e1ebfd 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 2.6E-9 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS26820 03d7c1ea27f42293e32e69b298e1ebfd 296 Gene3D G3DSA:1.10.10.10 7 82 1.7E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS13475 b28fad4e920b36fb114e7b5d3ae0b2a4 455 PANTHER PTHR23508:SF12 16 443 6.3E-194 T 22-04-2016 PP4_RS13475 b28fad4e920b36fb114e7b5d3ae0b2a4 455 SUPERFAMILY SSF103473 17 421 5.75E-56 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS13475 b28fad4e920b36fb114e7b5d3ae0b2a4 455 Pfam PF00083 Sugar (and other) transporter 21 225 8.2E-22 T 22-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 PP4_RS13475 b28fad4e920b36fb114e7b5d3ae0b2a4 455 Pfam PF07690 Major Facilitator Superfamily 243 420 2.7E-9 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS13475 b28fad4e920b36fb114e7b5d3ae0b2a4 455 ProSitePatterns PS00217 Sugar transport proteins signature 2. 129 154 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PP4_RS13475 b28fad4e920b36fb114e7b5d3ae0b2a4 455 Gene3D G3DSA:1.20.1250.20 19 219 1.7E-20 T 22-04-2016 PP4_RS13475 b28fad4e920b36fb114e7b5d3ae0b2a4 455 Gene3D G3DSA:1.20.1250.20 237 424 1.3E-15 T 22-04-2016 PP4_RS13475 b28fad4e920b36fb114e7b5d3ae0b2a4 455 PANTHER PTHR23508 16 443 6.3E-194 T 22-04-2016 PP4_RS01475 45f236c0c29c2dec186750427e316a5b 691 SUPERFAMILY SSF56935 25 691 7.63E-121 T 22-04-2016 PP4_RS01475 45f236c0c29c2dec186750427e316a5b 691 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 64 691 1.5E-102 T 22-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 PP4_RS01475 45f236c0c29c2dec186750427e316a5b 691 Pfam PF00593 TonB dependent receptor 454 689 1.3E-28 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS01475 45f236c0c29c2dec186750427e316a5b 691 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 674 691 - T 22-04-2016 IPR010917 TonB-dependent receptor, conserved site PP4_RS01475 45f236c0c29c2dec186750427e316a5b 691 Gene3D G3DSA:2.40.170.20 171 691 2.0E-139 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS01475 45f236c0c29c2dec186750427e316a5b 691 PANTHER PTHR32552:SF10 53 691 1.5E-127 T 22-04-2016 PP4_RS01475 45f236c0c29c2dec186750427e316a5b 691 PANTHER PTHR32552:SF10 6 35 1.5E-127 T 22-04-2016 PP4_RS01475 45f236c0c29c2dec186750427e316a5b 691 Pfam PF07715 TonB-dependent Receptor Plug Domain 63 156 6.6E-17 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS01475 45f236c0c29c2dec186750427e316a5b 691 PANTHER PTHR32552 53 691 1.5E-127 T 22-04-2016 PP4_RS01475 45f236c0c29c2dec186750427e316a5b 691 PANTHER PTHR32552 6 35 1.5E-127 T 22-04-2016 PP4_RS01475 45f236c0c29c2dec186750427e316a5b 691 Gene3D G3DSA:2.170.130.10 24 166 4.5E-29 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS11240 a81455293dec1cd754c3891a4c7cc7f8 142 PIRSF PIRSF029509 1 142 6.3E-45 T 22-04-2016 IPR016923 Uncharacterised conserved protein UCP029509, membrane PP4_RS23475 db9c43dc19b2b223e1c33e4b62e6a2a2 337 PANTHER PTHR19372 82 332 1.8E-144 T 22-04-2016 PP4_RS23475 db9c43dc19b2b223e1c33e4b62e6a2a2 337 Gene3D G3DSA:3.90.420.10 85 335 6.4E-70 T 22-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 PP4_RS23475 db9c43dc19b2b223e1c33e4b62e6a2a2 337 SUPERFAMILY SSF56524 81 333 3.79E-89 T 22-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 PP4_RS23475 db9c43dc19b2b223e1c33e4b62e6a2a2 337 Hamap MF_01206 Sulfoxide reductase catalytic subunit YedY [yedY]. 6 337 61.158 T 22-04-2016 IPR022867 Protein-methionine-sulfoxide reductase subunit MsrP GO:0016667|GO:0030091|GO:0043546|GO:0055114 PP4_RS23475 db9c43dc19b2b223e1c33e4b62e6a2a2 337 Pfam PF00174 Oxidoreductase molybdopterin binding domain 114 271 3.1E-29 T 22-04-2016 IPR000572 Oxidoreductase, molybdopterin-binding domain GO:0042128 PP4_RS23475 db9c43dc19b2b223e1c33e4b62e6a2a2 337 PANTHER PTHR19372:SF1 82 332 1.8E-144 T 22-04-2016 PP4_RS22445 39aa7722c71a4e0ce78208755036bb65 370 Gene3D G3DSA:3.40.250.10 9 132 3.8E-28 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS22445 39aa7722c71a4e0ce78208755036bb65 370 Hamap MF_01622 tRNA 2-selenouridine synthase [selU]. 1 363 52.951 T 22-04-2016 IPR017582 tRNA 2-selenouridine synthase GO:0016785|GO:0043828|GO:0070329 PP4_RS22445 39aa7722c71a4e0ce78208755036bb65 370 PANTHER PTHR30401 6 370 1.5E-181 T 22-04-2016 PP4_RS22445 39aa7722c71a4e0ce78208755036bb65 370 PANTHER PTHR30401:SF0 6 370 1.5E-181 T 22-04-2016 PP4_RS22445 39aa7722c71a4e0ce78208755036bb65 370 TIGRFAM TIGR03167 tRNA_sel_U_synt: tRNA 2-selenouridine synthase 16 348 3.8E-108 T 22-04-2016 IPR017582 tRNA 2-selenouridine synthase GO:0016785|GO:0043828|GO:0070329 PP4_RS22445 39aa7722c71a4e0ce78208755036bb65 370 SUPERFAMILY SSF52821 4 64 8.64E-19 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS22445 39aa7722c71a4e0ce78208755036bb65 370 SUPERFAMILY SSF52821 92 156 8.64E-19 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS12380 915be8f9d1b370a76a22fd3d6cba89d1 302 Pfam PF09867 Uncharacterized protein conserved in bacteria (DUF2094) 3 127 6.0E-23 T 22-04-2016 IPR017748 Type VI secretion system-associated, BMAA0400 PP4_RS12380 915be8f9d1b370a76a22fd3d6cba89d1 302 TIGRFAM TIGR03373 VI_minor_4: type VI secretion-associated protein, BMA_A0400 family 3 135 4.3E-31 T 22-04-2016 IPR017748 Type VI secretion system-associated, BMAA0400 PP4_RS12380 915be8f9d1b370a76a22fd3d6cba89d1 302 Gene3D G3DSA:3.40.1730.10 2 165 1.9E-27 T 22-04-2016 PP4_RS25935 5da7a06eefe1d03d81faadf1f26a8832 333 Pfam PF04350 Pilus assembly protein, PilO 45 182 1.6E-12 T 22-04-2016 IPR007445 Pilus assembly protein, PilO PP4_RS25935 5da7a06eefe1d03d81faadf1f26a8832 333 Pfam PF04351 Pilus assembly protein, PilP 221 297 1.7E-14 T 22-04-2016 IPR007446 Pilus assembly protein PilP PP4_RS25935 5da7a06eefe1d03d81faadf1f26a8832 333 Gene3D G3DSA:3.30.70.60 91 185 2.2E-13 T 22-04-2016 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 PP4_RS26840 70e8be811c3de49d44f334810a7a0863 555 SMART SM00052 292 538 1.3E-108 T 22-04-2016 IPR001633 EAL domain PP4_RS26840 70e8be811c3de49d44f334810a7a0863 555 Gene3D G3DSA:3.20.20.450 296 544 4.9E-96 T 22-04-2016 IPR001633 EAL domain PP4_RS26840 70e8be811c3de49d44f334810a7a0863 555 Gene3D G3DSA:3.30.70.270 126 290 2.7E-43 T 22-04-2016 PP4_RS26840 70e8be811c3de49d44f334810a7a0863 555 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 120 274 1.8E-23 T 22-04-2016 IPR000160 GGDEF domain PP4_RS26840 70e8be811c3de49d44f334810a7a0863 555 SUPERFAMILY SSF141868 297 546 9.55E-88 T 22-04-2016 IPR001633 EAL domain PP4_RS26840 70e8be811c3de49d44f334810a7a0863 555 PANTHER PTHR33121:SF13 245 546 1.4E-77 T 22-04-2016 PP4_RS26840 70e8be811c3de49d44f334810a7a0863 555 PANTHER PTHR33121 245 546 1.4E-77 T 22-04-2016 PP4_RS26840 70e8be811c3de49d44f334810a7a0863 555 PANTHER PTHR33121 132 139 1.4E-77 T 22-04-2016 PP4_RS26840 70e8be811c3de49d44f334810a7a0863 555 SMART SM00267 113 282 1.7E-36 T 22-04-2016 IPR000160 GGDEF domain PP4_RS26840 70e8be811c3de49d44f334810a7a0863 555 PANTHER PTHR33121:SF13 132 139 1.4E-77 T 22-04-2016 PP4_RS26840 70e8be811c3de49d44f334810a7a0863 555 SUPERFAMILY SSF55073 129 284 3.61E-36 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS26840 70e8be811c3de49d44f334810a7a0863 555 Pfam PF00990 Diguanylate cyclase, GGDEF domain 124 273 6.5E-32 T 22-04-2016 IPR000160 GGDEF domain PP4_RS26840 70e8be811c3de49d44f334810a7a0863 555 Pfam PF00563 EAL domain 298 533 4.1E-74 T 22-04-2016 IPR001633 EAL domain PP4_RS02755 e73c67f14c00978c8ea9d4d8898e4e5a 294 Pfam PF04321 RmlD substrate binding domain 3 290 3.2E-74 T 22-04-2016 IPR029903 RmlD-like substrate binding domain PP4_RS02755 e73c67f14c00978c8ea9d4d8898e4e5a 294 SUPERFAMILY SSF51735 3 291 4.27E-53 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS02755 e73c67f14c00978c8ea9d4d8898e4e5a 294 Gene3D G3DSA:3.40.50.720 3 233 1.0E-21 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS02755 e73c67f14c00978c8ea9d4d8898e4e5a 294 PANTHER PTHR10491:SF4 1 290 2.2E-54 T 22-04-2016 PP4_RS02755 e73c67f14c00978c8ea9d4d8898e4e5a 294 PANTHER PTHR10491 1 290 2.2E-54 T 22-04-2016 IPR005913 dTDP-4-dehydrorhamnose reductase family PP4_RS11605 ebd988080926a1b1d1e60d6562b102dc 469 SUPERFAMILY SSF53383 97 467 3.94E-93 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS11605 ebd988080926a1b1d1e60d6562b102dc 469 Gene3D G3DSA:3.40.640.10 146 349 6.4E-70 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS11605 ebd988080926a1b1d1e60d6562b102dc 469 SMART SM00345 7 66 4.6E-14 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS11605 ebd988080926a1b1d1e60d6562b102dc 469 SUPERFAMILY SSF46785 2 75 1.56E-17 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS11605 ebd988080926a1b1d1e60d6562b102dc 469 Pfam PF00392 Bacterial regulatory proteins, gntR family 4 66 8.0E-12 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS11605 ebd988080926a1b1d1e60d6562b102dc 469 Pfam PF00155 Aminotransferase class I and II 148 447 1.3E-25 T 22-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PP4_RS11605 ebd988080926a1b1d1e60d6562b102dc 469 Gene3D G3DSA:3.90.1150.10 350 467 3.3E-6 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS11605 ebd988080926a1b1d1e60d6562b102dc 469 Gene3D G3DSA:1.10.10.10 1 67 2.8E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS11605 ebd988080926a1b1d1e60d6562b102dc 469 PANTHER PTHR11751 86 467 3.5E-176 T 22-04-2016 PP4_RS11605 ebd988080926a1b1d1e60d6562b102dc 469 PANTHER PTHR11751:SF314 86 467 3.5E-176 T 22-04-2016 PP4_RS08285 63d66edc2db14f2a8b10f1e7230a1ee0 87 Pfam PF04606 Ogr/Delta-like zinc finger 8 52 2.6E-15 T 22-04-2016 IPR007684 Zinc finger, Ogr/Delta-type PP4_RS10090 bb59eeaf36ed557433b81acb8172bc60 97 Gene3D G3DSA:3.30.70.900 1 96 8.6E-38 T 22-04-2016 PP4_RS10090 bb59eeaf36ed557433b81acb8172bc60 97 PANTHER PTHR41521 1 97 4.3E-24 T 22-04-2016 PP4_RS10090 bb59eeaf36ed557433b81acb8172bc60 97 Pfam PF07045 Domain of unknown function (DUF1330) 2 95 2.7E-37 T 22-04-2016 IPR010753 Domain of unknown function DUF1330 PP4_RS10090 bb59eeaf36ed557433b81acb8172bc60 97 SUPERFAMILY SSF54909 1 95 6.97E-32 T 22-04-2016 IPR011008 Dimeric alpha-beta barrel PP4_RS12645 50d5ad8bce6852049264f6e5e80f6ae6 185 Pfam PF02563 Polysaccharide biosynthesis/export protein 25 97 1.6E-19 T 22-04-2016 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 PP4_RS12645 50d5ad8bce6852049264f6e5e80f6ae6 185 Gene3D G3DSA:3.30.1950.10 32 95 1.6E-19 T 22-04-2016 PP4_RS12645 50d5ad8bce6852049264f6e5e80f6ae6 185 PANTHER PTHR33619 20 185 4.5E-36 T 22-04-2016 PP4_RS12645 50d5ad8bce6852049264f6e5e80f6ae6 185 Gene3D G3DSA:3.10.560.10 96 185 7.5E-19 T 22-04-2016 PP4_RS12645 50d5ad8bce6852049264f6e5e80f6ae6 185 Pfam PF10531 SLBB domain 104 153 1.1E-6 T 22-04-2016 IPR019554 Soluble ligand binding domain PP4_RS11440 c96a1c61dfb0a35cb48d11b67964f4ca 449 PIRSF PIRSF002808 3 444 3.5E-36 T 22-04-2016 IPR000849 Sugar phosphate transporter GO:0005215|GO:0006810|GO:0016021 PP4_RS11440 c96a1c61dfb0a35cb48d11b67964f4ca 449 SUPERFAMILY SSF103473 13 436 3.01E-78 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS11440 c96a1c61dfb0a35cb48d11b67964f4ca 449 PANTHER PTHR11662 13 437 1.1E-141 T 22-04-2016 PP4_RS11440 c96a1c61dfb0a35cb48d11b67964f4ca 449 PANTHER PTHR11662:SF18 13 437 1.1E-141 T 22-04-2016 PP4_RS11440 c96a1c61dfb0a35cb48d11b67964f4ca 449 Gene3D G3DSA:1.20.1250.20 19 209 1.5E-44 T 22-04-2016 PP4_RS11440 c96a1c61dfb0a35cb48d11b67964f4ca 449 Pfam PF07690 Major Facilitator Superfamily 34 396 2.2E-48 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS11440 c96a1c61dfb0a35cb48d11b67964f4ca 449 Gene3D G3DSA:1.20.1250.20 243 436 7.8E-29 T 22-04-2016 PP4_RS24290 9089932da45a601fe60446fc99af7039 336 PANTHER PTHR19370 1 332 1.4E-58 T 22-04-2016 PP4_RS24290 9089932da45a601fe60446fc99af7039 336 Gene3D G3DSA:3.40.50.80 207 334 8.4E-36 T 22-04-2016 PP4_RS24290 9089932da45a601fe60446fc99af7039 336 PRINTS PR00410 Phenol hydroxylase reductase family signature 236 245 3.7E-24 T 22-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PP4_RS24290 9089932da45a601fe60446fc99af7039 336 PRINTS PR00410 Phenol hydroxylase reductase family signature 211 230 3.7E-24 T 22-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PP4_RS24290 9089932da45a601fe60446fc99af7039 336 PRINTS PR00410 Phenol hydroxylase reductase family signature 196 205 3.7E-24 T 22-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PP4_RS24290 9089932da45a601fe60446fc99af7039 336 PRINTS PR00410 Phenol hydroxylase reductase family signature 153 160 3.7E-24 T 22-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PP4_RS24290 9089932da45a601fe60446fc99af7039 336 PRINTS PR00410 Phenol hydroxylase reductase family signature 300 308 3.7E-24 T 22-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PP4_RS24290 9089932da45a601fe60446fc99af7039 336 PRINTS PR00410 Phenol hydroxylase reductase family signature 136 148 3.7E-24 T 22-04-2016 IPR001221 Phenol hydroxylase reductase GO:0055114 PP4_RS24290 9089932da45a601fe60446fc99af7039 336 PANTHER PTHR19370:SF128 1 332 1.4E-58 T 22-04-2016 PP4_RS24290 9089932da45a601fe60446fc99af7039 336 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 153 160 7.9E-6 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS24290 9089932da45a601fe60446fc99af7039 336 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 300 308 7.9E-6 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS24290 9089932da45a601fe60446fc99af7039 336 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 211 230 7.9E-6 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS24290 9089932da45a601fe60446fc99af7039 336 SUPERFAMILY SSF63380 76 205 8.96E-23 T 22-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 PP4_RS24290 9089932da45a601fe60446fc99af7039 336 Pfam PF00175 Oxidoreductase NAD-binding domain 212 314 4.3E-21 T 22-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 PP4_RS24290 9089932da45a601fe60446fc99af7039 336 Pfam PF00970 Oxidoreductase FAD-binding domain 112 202 2.0E-18 T 22-04-2016 IPR008333 Oxidoreductase, FAD-binding domain PP4_RS24290 9089932da45a601fe60446fc99af7039 336 Gene3D G3DSA:2.40.30.10 106 198 2.9E-22 T 22-04-2016 PP4_RS24290 9089932da45a601fe60446fc99af7039 336 Gene3D G3DSA:3.10.20.30 3 96 1.1E-26 T 22-04-2016 IPR012675 Beta-grasp domain PP4_RS24290 9089932da45a601fe60446fc99af7039 336 SUPERFAMILY SSF54292 2 98 9.31E-27 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS24290 9089932da45a601fe60446fc99af7039 336 ProSitePatterns PS00197 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 40 48 - T 22-04-2016 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site GO:0051537 PP4_RS24290 9089932da45a601fe60446fc99af7039 336 Pfam PF00111 2Fe-2S iron-sulfur cluster binding domain 10 85 1.0E-14 T 22-04-2016 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain GO:0009055|GO:0051536 PP4_RS24290 9089932da45a601fe60446fc99af7039 336 SUPERFAMILY SSF52343 202 334 4.98E-35 T 22-04-2016 PP4_RS23040 86b898aef5fd6f142e1105678f02400a 204 Pfam PF01810 LysE type translocator 14 200 3.2E-30 T 22-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PP4_RS23040 86b898aef5fd6f142e1105678f02400a 204 PANTHER PTHR30086 1 200 3.9E-51 T 22-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PP4_RS23040 86b898aef5fd6f142e1105678f02400a 204 PANTHER PTHR30086:SF2 1 200 3.9E-51 T 22-04-2016 PP4_RS23040 86b898aef5fd6f142e1105678f02400a 204 PIRSF PIRSF006324 1 202 4.0E-42 T 22-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PP4_RS10525 a8141a6a79686f2693c3a86c61f86c35 415 PANTHER PTHR30482:SF10 181 324 1.6E-117 T 22-04-2016 PP4_RS10525 a8141a6a79686f2693c3a86c61f86c35 415 PANTHER PTHR30482:SF10 1 164 1.6E-117 T 22-04-2016 PP4_RS10525 a8141a6a79686f2693c3a86c61f86c35 415 PANTHER PTHR30482:SF10 347 401 1.6E-117 T 22-04-2016 PP4_RS10525 a8141a6a79686f2693c3a86c61f86c35 415 Pfam PF02653 Branched-chain amino acid transport system / permease component 34 361 1.3E-50 T 22-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 PP4_RS10525 a8141a6a79686f2693c3a86c61f86c35 415 PANTHER PTHR30482 181 324 1.6E-117 T 22-04-2016 PP4_RS10525 a8141a6a79686f2693c3a86c61f86c35 415 PANTHER PTHR30482 1 164 1.6E-117 T 22-04-2016 PP4_RS10525 a8141a6a79686f2693c3a86c61f86c35 415 PANTHER PTHR30482 347 401 1.6E-117 T 22-04-2016 PP4_RS00455 39af6e0d82f62554305082d452135a76 510 PANTHER PTHR11814:SF123 5 493 3.9E-196 T 22-04-2016 PP4_RS00455 39af6e0d82f62554305082d452135a76 510 PANTHER PTHR11814 5 493 3.9E-196 T 22-04-2016 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 Reactome: REACT_15518 PP4_RS00455 39af6e0d82f62554305082d452135a76 510 Pfam PF00916 Sulfate permease family 13 382 6.7E-60 T 22-04-2016 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 PP4_RS02045 70b9957355d8d37c9a4ae14c26bbf497 426 Pfam PF00202 Aminotransferase class-III 44 410 4.6E-84 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS02045 70b9957355d8d37c9a4ae14c26bbf497 426 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 239 276 - T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS02045 70b9957355d8d37c9a4ae14c26bbf497 426 Gene3D G3DSA:3.40.640.10 81 317 1.6E-63 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS02045 70b9957355d8d37c9a4ae14c26bbf497 426 PANTHER PTHR11986 45 419 2.1E-182 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS02045 70b9957355d8d37c9a4ae14c26bbf497 426 SUPERFAMILY SSF53383 34 414 3.09E-99 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS02045 70b9957355d8d37c9a4ae14c26bbf497 426 PANTHER PTHR11986:SF88 45 419 2.1E-182 T 22-04-2016 PP4_RS02045 70b9957355d8d37c9a4ae14c26bbf497 426 Gene3D G3DSA:3.90.1150.10 322 412 1.3E-32 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS02045 70b9957355d8d37c9a4ae14c26bbf497 426 Gene3D G3DSA:3.90.1150.10 30 78 1.3E-32 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS06840 155fa16c795a64f3b0c33653564b21ab 342 PANTHER PTHR30420 1 342 1.5E-180 T 22-04-2016 PP4_RS06840 155fa16c795a64f3b0c33653564b21ab 342 Gene3D G3DSA:2.40.40.20 279 335 3.0E-6 T 22-04-2016 PP4_RS06840 155fa16c795a64f3b0c33653564b21ab 342 TIGRFAM TIGR03244 arg_catab_AstA: arginine N-succinyltransferase 2 335 2.6E-157 T 22-04-2016 IPR017650 Arginine N-succinyltransferase GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109|UniPathway: UPA00185 PP4_RS06840 155fa16c795a64f3b0c33653564b21ab 342 Gene3D G3DSA:3.40.630.30 1 132 2.0E-4 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS06840 155fa16c795a64f3b0c33653564b21ab 342 TIGRFAM TIGR03243 arg_catab_AOST: arginine and ornithine succinyltransferase subunits 2 335 2.3E-145 T 22-04-2016 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109|UniPathway: UPA00185 PP4_RS06840 155fa16c795a64f3b0c33653564b21ab 342 PANTHER PTHR30420:SF1 1 342 1.5E-180 T 22-04-2016 PP4_RS06840 155fa16c795a64f3b0c33653564b21ab 342 SUPERFAMILY SSF55729 1 335 2.05E-124 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS06840 155fa16c795a64f3b0c33653564b21ab 342 Pfam PF04958 Arginine N-succinyltransferase beta subunit 1 334 1.6E-133 T 22-04-2016 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109|UniPathway: UPA00185 PP4_RS09065 15bb21166ec26033569270a85117c357 437 Pfam PF07690 Major Facilitator Superfamily 32 394 2.0E-38 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS09065 15bb21166ec26033569270a85117c357 437 SUPERFAMILY SSF103473 16 432 1.15E-81 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS09065 15bb21166ec26033569270a85117c357 437 Gene3D G3DSA:1.20.1250.20 23 224 7.9E-44 T 22-04-2016 PP4_RS09065 15bb21166ec26033569270a85117c357 437 Gene3D G3DSA:1.20.1250.20 249 429 4.0E-15 T 22-04-2016 PP4_RS09065 15bb21166ec26033569270a85117c357 437 PANTHER PTHR11662:SF3 18 423 3.1E-133 T 22-04-2016 PP4_RS09065 15bb21166ec26033569270a85117c357 437 PANTHER PTHR11662 18 423 3.1E-133 T 22-04-2016 PP4_RS18545 941d0729e35c94d27c970b2654f7f877 99 Gene3D G3DSA:2.40.10.220 7 90 4.1E-8 T 22-04-2016 PP4_RS18545 941d0729e35c94d27c970b2654f7f877 99 SUPERFAMILY SSF141371 7 92 1.18E-17 T 22-04-2016 PP4_RS18545 941d0729e35c94d27c970b2654f7f877 99 Pfam PF07238 PilZ domain 10 95 1.4E-13 T 22-04-2016 IPR009875 PilZ domain GO:0035438 PP4_RS16915 006a830b5378e704e4b06aa544da2260 265 PANTHER PTHR24322 12 138 3.0E-60 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS16915 006a830b5378e704e4b06aa544da2260 265 PANTHER PTHR24322 154 186 3.0E-60 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS16915 006a830b5378e704e4b06aa544da2260 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 223 243 2.7E-28 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS16915 006a830b5378e704e4b06aa544da2260 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 154 173 2.7E-28 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS16915 006a830b5378e704e4b06aa544da2260 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 81 92 2.7E-28 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS16915 006a830b5378e704e4b06aa544da2260 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 2.7E-28 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS16915 006a830b5378e704e4b06aa544da2260 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 128 144 2.7E-28 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS16915 006a830b5378e704e4b06aa544da2260 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 175 192 2.7E-28 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS16915 006a830b5378e704e4b06aa544da2260 265 SUPERFAMILY SSF51735 1 259 1.01E-62 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS16915 006a830b5378e704e4b06aa544da2260 265 PANTHER PTHR24322:SF25 12 138 3.0E-60 T 22-04-2016 PP4_RS16915 006a830b5378e704e4b06aa544da2260 265 PANTHER PTHR24322:SF25 154 186 3.0E-60 T 22-04-2016 PP4_RS16915 006a830b5378e704e4b06aa544da2260 265 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 16 259 3.1E-41 T 22-04-2016 PP4_RS16915 006a830b5378e704e4b06aa544da2260 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 2.1E-5 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS16915 006a830b5378e704e4b06aa544da2260 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 2.1E-5 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS16915 006a830b5378e704e4b06aa544da2260 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 2.1E-5 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS16915 006a830b5378e704e4b06aa544da2260 265 Gene3D G3DSA:3.40.50.720 2 259 2.6E-66 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS13715 e4d715cd6aa64b78a84629131c348714 544 Gene3D G3DSA:2.30.38.10 361 434 2.0E-24 T 22-04-2016 PP4_RS13715 e4d715cd6aa64b78a84629131c348714 544 PANTHER PTHR24096:SF214 61 139 2.4E-162 T 22-04-2016 PP4_RS13715 e4d715cd6aa64b78a84629131c348714 544 PANTHER PTHR24096:SF214 162 532 2.4E-162 T 22-04-2016 PP4_RS13715 e4d715cd6aa64b78a84629131c348714 544 Gene3D G3DSA:3.40.50.980 20 196 1.1E-32 T 22-04-2016 PP4_RS13715 e4d715cd6aa64b78a84629131c348714 544 ProSitePatterns PS00455 Putative AMP-binding domain signature. 192 203 - T 22-04-2016 IPR020845 AMP-binding, conserved site PP4_RS13715 e4d715cd6aa64b78a84629131c348714 544 Gene3D G3DSA:3.40.50.980 197 352 8.9E-39 T 22-04-2016 PP4_RS13715 e4d715cd6aa64b78a84629131c348714 544 Pfam PF00501 AMP-binding enzyme 27 441 1.8E-90 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PP4_RS13715 e4d715cd6aa64b78a84629131c348714 544 PANTHER PTHR24096 61 139 2.4E-162 T 22-04-2016 PP4_RS13715 e4d715cd6aa64b78a84629131c348714 544 PANTHER PTHR24096 162 532 2.4E-162 T 22-04-2016 PP4_RS13715 e4d715cd6aa64b78a84629131c348714 544 Gene3D G3DSA:3.30.300.30 439 538 1.7E-30 T 22-04-2016 PP4_RS13715 e4d715cd6aa64b78a84629131c348714 544 SUPERFAMILY SSF56801 13 537 3.79E-145 T 22-04-2016 PP4_RS13715 e4d715cd6aa64b78a84629131c348714 544 Pfam PF13193 AMP-binding enzyme C-terminal domain 450 525 3.8E-19 T 22-04-2016 IPR025110 AMP-binding enzyme C-terminal domain PP4_RS11940 d6f7755b087d1821c9702b9853b621b4 230 Gene3D G3DSA:3.40.50.150 10 155 1.5E-11 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS11940 d6f7755b087d1821c9702b9853b621b4 230 PIRSF PIRSF018637 4 230 3.2E-65 T 22-04-2016 IPR006901 tRNA methyltransferase TrmK GO:0016429 PP4_RS11940 d6f7755b087d1821c9702b9853b621b4 230 SUPERFAMILY SSF53335 5 143 2.47E-13 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS11940 d6f7755b087d1821c9702b9853b621b4 230 PANTHER PTHR38451 2 229 4.0E-67 T 22-04-2016 PP4_RS11940 d6f7755b087d1821c9702b9853b621b4 230 Pfam PF04816 tRNA (adenine(22)-N(1))-methyltransferase 23 206 6.3E-62 T 22-04-2016 IPR006901 tRNA methyltransferase TrmK GO:0016429 PP4_RS15975 b9b9fe0252882140d8d6a0ee950b192c 387 Pfam PF10442 FIST C domain 236 364 7.7E-11 T 22-04-2016 IPR019494 FIST, C-domain PP4_RS15975 b9b9fe0252882140d8d6a0ee950b192c 387 SMART SM01204 236 366 3.1E-29 T 22-04-2016 IPR019494 FIST, C-domain PP4_RS15975 b9b9fe0252882140d8d6a0ee950b192c 387 Pfam PF08495 FIST N domain 37 233 4.6E-33 T 22-04-2016 IPR013702 FIST domain, N-terminal PP4_RS15975 b9b9fe0252882140d8d6a0ee950b192c 387 PANTHER PTHR40252 2 387 4.1E-144 T 22-04-2016 PP4_RS15975 b9b9fe0252882140d8d6a0ee950b192c 387 SMART SM00897 34 235 1.1E-57 T 22-04-2016 IPR013702 FIST domain, N-terminal PP4_RS15975 b9b9fe0252882140d8d6a0ee950b192c 387 PANTHER PTHR40252:SF2 2 387 4.1E-144 T 22-04-2016 PP4_RS00325 dcb1befd2bc7651fb9bc61e11ebca1d6 303 Hamap MF_00333 Oxygen-dependent coproporphyrinogen-III oxidase [hemF]. 2 276 55.916 T 22-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PP4_RS00325 dcb1befd2bc7651fb9bc61e11ebca1d6 303 Pfam PF01218 Coproporphyrinogen III oxidase 8 301 3.5E-132 T 22-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PP4_RS00325 dcb1befd2bc7651fb9bc61e11ebca1d6 303 SUPERFAMILY SSF102886 4 301 7.06E-138 T 22-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PP4_RS00325 dcb1befd2bc7651fb9bc61e11ebca1d6 303 PIRSF PIRSF000166 1 302 9.5E-128 T 22-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PP4_RS00325 dcb1befd2bc7651fb9bc61e11ebca1d6 303 PRINTS PR00073 Coprogen oxidase signature 261 287 1.8E-84 T 22-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PP4_RS00325 dcb1befd2bc7651fb9bc61e11ebca1d6 303 PRINTS PR00073 Coprogen oxidase signature 30 46 1.8E-84 T 22-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PP4_RS00325 dcb1befd2bc7651fb9bc61e11ebca1d6 303 PRINTS PR00073 Coprogen oxidase signature 89 113 1.8E-84 T 22-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PP4_RS00325 dcb1befd2bc7651fb9bc61e11ebca1d6 303 PRINTS PR00073 Coprogen oxidase signature 47 68 1.8E-84 T 22-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PP4_RS00325 dcb1befd2bc7651fb9bc61e11ebca1d6 303 PRINTS PR00073 Coprogen oxidase signature 161 190 1.8E-84 T 22-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PP4_RS00325 dcb1befd2bc7651fb9bc61e11ebca1d6 303 PRINTS PR00073 Coprogen oxidase signature 233 260 1.8E-84 T 22-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PP4_RS00325 dcb1befd2bc7651fb9bc61e11ebca1d6 303 PRINTS PR00073 Coprogen oxidase signature 124 146 1.8E-84 T 22-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PP4_RS00325 dcb1befd2bc7651fb9bc61e11ebca1d6 303 Gene3D G3DSA:3.40.1500.10 4 301 7.2E-136 T 22-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PP4_RS00325 dcb1befd2bc7651fb9bc61e11ebca1d6 303 PANTHER PTHR10755 3 302 6.6E-190 T 22-04-2016 IPR001260 Coproporphyrinogen III oxidase, aerobic GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PP4_RS00325 dcb1befd2bc7651fb9bc61e11ebca1d6 303 ProSitePatterns PS01021 Coproporphyrinogen III oxidase signature. 165 189 - T 22-04-2016 IPR018375 Coproporphyrinogen III oxidase, conserved site GO:0004109|GO:0006779|GO:0055114 KEGG: 00860+1.3.3.3|MetaCyc: PWY-5531|MetaCyc: PWY-7159|UniPathway: UPA00251 PP4_RS20720 41bee4dbde620b4957bfa1430c62ce76 179 Pfam PF09831 Uncharacterized protein conserved in bacteria (DUF2058) 4 179 5.3E-60 T 22-04-2016 IPR018636 Protein of unknown function DUF2058 PP4_RS13940 3f69ef0df5bf97169e7d4a70737212cf 230 Gene3D G3DSA:3.40.50.2300 3 122 1.4E-35 T 22-04-2016 PP4_RS13940 3f69ef0df5bf97169e7d4a70737212cf 230 Pfam PF00486 Transcriptional regulatory protein, C terminal 153 227 1.4E-17 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS13940 3f69ef0df5bf97169e7d4a70737212cf 230 Pfam PF00072 Response regulator receiver domain 4 112 2.7E-24 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS13940 3f69ef0df5bf97169e7d4a70737212cf 230 SUPERFAMILY SSF52172 2 122 1.57E-37 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS13940 3f69ef0df5bf97169e7d4a70737212cf 230 PANTHER PTHR26402:SF292 2 228 3.8E-77 T 22-04-2016 PP4_RS13940 3f69ef0df5bf97169e7d4a70737212cf 230 Gene3D G3DSA:1.10.10.10 129 229 9.6E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS13940 3f69ef0df5bf97169e7d4a70737212cf 230 SMART SM00448 2 112 5.3E-40 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS13940 3f69ef0df5bf97169e7d4a70737212cf 230 SUPERFAMILY SSF46894 128 229 7.09E-22 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS13940 3f69ef0df5bf97169e7d4a70737212cf 230 PANTHER PTHR26402 2 228 3.8E-77 T 22-04-2016 PP4_RS13940 3f69ef0df5bf97169e7d4a70737212cf 230 SMART SM00862 151 227 1.0E-19 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS01875 6650156e2ec7dfed66fe6d54a994325a 881 TIGRFAM TIGR00759 aceE: pyruvate dehydrogenase (acetyl-transferring), homodimeric type 2 879 0.0 T 22-04-2016 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 PP4_RS01875 6650156e2ec7dfed66fe6d54a994325a 881 Gene3D G3DSA:3.40.50.970 465 696 2.0E-119 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS01875 6650156e2ec7dfed66fe6d54a994325a 881 Gene3D G3DSA:3.40.50.920 698 879 4.2E-77 T 22-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 PP4_RS01875 6650156e2ec7dfed66fe6d54a994325a 881 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 134 287 2.9E-6 T 22-04-2016 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560|UniPathway: UPA00064 PP4_RS01875 6650156e2ec7dfed66fe6d54a994325a 881 SUPERFAMILY SSF52922 693 879 2.44E-59 T 22-04-2016 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824|GO:0008152 PP4_RS01875 6650156e2ec7dfed66fe6d54a994325a 881 SUPERFAMILY SSF52518 465 692 5.06E-96 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS01875 6650156e2ec7dfed66fe6d54a994325a 881 PIRSF PIRSF000156 1 881 0.0 T 22-04-2016 IPR004660 2-oxo-acid dehydrogenase E1 component homodimeric type GO:0016491|GO:0055114 KEGG: 00010+1.2.4.1|KEGG: 00020+1.2.4.1|KEGG: 00620+1.2.4.1 PP4_RS01875 6650156e2ec7dfed66fe6d54a994325a 881 SUPERFAMILY SSF52518 52 459 5.56E-134 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS01875 6650156e2ec7dfed66fe6d54a994325a 881 Gene3D G3DSA:3.40.50.970 51 459 1.1E-150 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS01875 6650156e2ec7dfed66fe6d54a994325a 881 PANTHER PTHR11624:SF72 356 447 0.0 T 22-04-2016 PP4_RS01875 6650156e2ec7dfed66fe6d54a994325a 881 PANTHER PTHR11624:SF72 779 863 0.0 T 22-04-2016 PP4_RS01875 6650156e2ec7dfed66fe6d54a994325a 881 PANTHER PTHR11624:SF72 545 760 0.0 T 22-04-2016 PP4_RS01875 6650156e2ec7dfed66fe6d54a994325a 881 PANTHER PTHR11624:SF72 464 527 0.0 T 22-04-2016 PP4_RS01875 6650156e2ec7dfed66fe6d54a994325a 881 PANTHER PTHR11624:SF72 69 288 0.0 T 22-04-2016 PP4_RS01875 6650156e2ec7dfed66fe6d54a994325a 881 PANTHER PTHR11624 356 447 0.0 T 22-04-2016 IPR033247 Transketolase family PP4_RS01875 6650156e2ec7dfed66fe6d54a994325a 881 PANTHER PTHR11624 779 863 0.0 T 22-04-2016 IPR033247 Transketolase family PP4_RS01875 6650156e2ec7dfed66fe6d54a994325a 881 PANTHER PTHR11624 545 760 0.0 T 22-04-2016 IPR033247 Transketolase family PP4_RS01875 6650156e2ec7dfed66fe6d54a994325a 881 PANTHER PTHR11624 464 527 0.0 T 22-04-2016 IPR033247 Transketolase family PP4_RS01875 6650156e2ec7dfed66fe6d54a994325a 881 PANTHER PTHR11624 69 288 0.0 T 22-04-2016 IPR033247 Transketolase family PP4_RS26045 052ddff42e1c423404a4586caaf8ad0a 240 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 52 238 1.3E-60 T 22-04-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 PP4_RS26045 052ddff42e1c423404a4586caaf8ad0a 240 Gene3D G3DSA:3.40.50.150 62 196 2.4E-15 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS26045 052ddff42e1c423404a4586caaf8ad0a 240 Pfam PF02390 Putative methyltransferase 65 234 1.8E-54 T 22-04-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 PP4_RS26045 052ddff42e1c423404a4586caaf8ad0a 240 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 25 239 30.418 T 22-04-2016 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 UniPathway: UPA00989 PP4_RS26045 052ddff42e1c423404a4586caaf8ad0a 240 SUPERFAMILY SSF53335 18 238 6.47E-40 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS26045 052ddff42e1c423404a4586caaf8ad0a 240 PANTHER PTHR23417:SF14 14 238 7.5E-79 T 22-04-2016 PP4_RS26045 052ddff42e1c423404a4586caaf8ad0a 240 PANTHER PTHR23417 14 238 7.5E-79 T 22-04-2016 PP4_RS06500 6199887866929e4db0cf1bc8115a46f6 454 SUPERFAMILY SSF55931 119 452 1.57E-107 T 22-04-2016 PP4_RS06500 6199887866929e4db0cf1bc8115a46f6 454 PANTHER PTHR20852:SF7 7 453 1.6E-137 T 22-04-2016 PP4_RS06500 6199887866929e4db0cf1bc8115a46f6 454 SMART SM01230 117 372 1.5E-99 T 22-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS06500 6199887866929e4db0cf1bc8115a46f6 454 SUPERFAMILY SSF54368 8 112 4.05E-7 T 22-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS06500 6199887866929e4db0cf1bc8115a46f6 454 Gene3D G3DSA:3.30.590.10 120 440 6.6E-99 T 22-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 PP4_RS06500 6199887866929e4db0cf1bc8115a46f6 454 PANTHER PTHR20852 7 453 1.6E-137 T 22-04-2016 PP4_RS06500 6199887866929e4db0cf1bc8115a46f6 454 Pfam PF00120 Glutamine synthetase, catalytic domain 118 450 1.8E-111 T 22-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS06500 6199887866929e4db0cf1bc8115a46f6 454 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 253 268 - T 22-04-2016 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS01325 876d383ea103f8c2d0062973641b0168 270 SUPERFAMILY SSF52540 19 217 1.44E-63 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS01325 876d383ea103f8c2d0062973641b0168 270 Pfam PF00005 ABC transporter 32 165 1.8E-31 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS01325 876d383ea103f8c2d0062973641b0168 270 Gene3D G3DSA:3.40.50.300 19 219 7.2E-63 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS01325 876d383ea103f8c2d0062973641b0168 270 PANTHER PTHR24220 18 263 1.0E-149 T 22-04-2016 PP4_RS01325 876d383ea103f8c2d0062973641b0168 270 SMART SM00382 41 215 7.9E-18 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS01325 876d383ea103f8c2d0062973641b0168 270 ProSitePatterns PS00211 ABC transporters family signature. 138 152 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS01325 876d383ea103f8c2d0062973641b0168 270 PANTHER PTHR24220:SF365 18 263 1.0E-149 T 22-04-2016 IPR017875 Aliphatic sulfonates import ATP-binding protein SsuB GO:0005215|GO:0005524|GO:0005886|GO:0006810 PP4_RS08320 4a6a418e286b2b01067d7ba0b68900d8 335 Pfam PF00146 NADH dehydrogenase 17 322 3.8E-118 T 22-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 PP4_RS08320 4a6a418e286b2b01067d7ba0b68900d8 335 Hamap MF_01350 NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic [ndhA]. 10 328 23.817 T 22-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 PP4_RS08320 4a6a418e286b2b01067d7ba0b68900d8 335 PANTHER PTHR11432 1 333 9.2E-224 T 22-04-2016 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 PP4_RS08320 4a6a418e286b2b01067d7ba0b68900d8 335 ProSitePatterns PS00667 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. 56 71 - T 22-04-2016 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 PP4_RS08320 4a6a418e286b2b01067d7ba0b68900d8 335 PANTHER PTHR11432:SF8 1 333 9.2E-224 T 22-04-2016 PP4_RS08320 4a6a418e286b2b01067d7ba0b68900d8 335 ProSitePatterns PS00668 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. 212 225 - T 22-04-2016 IPR018086 NADH:ubiquinone oxidoreductase, subunit 1, conserved site GO:0016020|GO:0055114 PP4_RS15705 500264443e3da69370cab8954e0364ef 128 SUPERFAMILY SSF51182 10 114 5.69E-22 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS15705 500264443e3da69370cab8954e0364ef 128 Pfam PF07883 Cupin domain 47 105 2.3E-11 T 22-04-2016 IPR013096 Cupin 2, conserved barrel PP4_RS15705 500264443e3da69370cab8954e0364ef 128 PANTHER PTHR36114 11 126 1.0E-23 T 22-04-2016 PP4_RS15705 500264443e3da69370cab8954e0364ef 128 Gene3D G3DSA:2.60.120.10 11 114 3.1E-35 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS07650 f5b96afc213539a48a8649a3122b7af6 162 Pfam PF11158 Protein of unknown function (DUF2938) 12 157 5.1E-63 T 22-04-2016 IPR021329 Protein of unknown function DUF2938 PP4_RS25725 2cd0fa7c708af608ce6babeb10eb9365 190 PRINTS PR01171 Bacterial lipocalin signature 171 181 4.7E-13 T 22-04-2016 IPR002446 Lipocalin, bacterial GO:0005215 PP4_RS25725 2cd0fa7c708af608ce6babeb10eb9365 190 PRINTS PR01171 Bacterial lipocalin signature 52 68 4.7E-13 T 22-04-2016 IPR002446 Lipocalin, bacterial GO:0005215 PP4_RS25725 2cd0fa7c708af608ce6babeb10eb9365 190 PRINTS PR01171 Bacterial lipocalin signature 144 155 4.7E-13 T 22-04-2016 IPR002446 Lipocalin, bacterial GO:0005215 PP4_RS25725 2cd0fa7c708af608ce6babeb10eb9365 190 PRINTS PR01171 Bacterial lipocalin signature 35 49 4.7E-13 T 22-04-2016 IPR002446 Lipocalin, bacterial GO:0005215 PP4_RS25725 2cd0fa7c708af608ce6babeb10eb9365 190 PIRSF PIRSF036893 2 190 2.4E-49 T 22-04-2016 IPR022271 Lipocalin, ApoD type PP4_RS25725 2cd0fa7c708af608ce6babeb10eb9365 190 Gene3D G3DSA:2.40.128.20 6 180 2.9E-48 T 22-04-2016 IPR012674 Calycin PP4_RS25725 2cd0fa7c708af608ce6babeb10eb9365 190 PANTHER PTHR10612 4 179 7.0E-37 T 22-04-2016 PP4_RS25725 2cd0fa7c708af608ce6babeb10eb9365 190 Pfam PF08212 Lipocalin-like domain 35 181 4.3E-57 T 22-04-2016 IPR000566 Lipocalin/cytosolic fatty-acid binding domain PP4_RS25725 2cd0fa7c708af608ce6babeb10eb9365 190 SUPERFAMILY SSF50814 12 182 1.03E-41 T 22-04-2016 IPR011038 Calycin-like PP4_RS21910 b2e29508785660fd08ade12c985faf42 324 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 45 314 2.2E-110 T 22-04-2016 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 PP4_RS21910 b2e29508785660fd08ade12c985faf42 324 Gene3D G3DSA:3.10.580.10 196 321 7.4E-39 T 22-04-2016 PP4_RS21910 b2e29508785660fd08ade12c985faf42 324 PANTHER PTHR38418:SF1 5 324 1.3E-36 T 22-04-2016 PP4_RS21910 b2e29508785660fd08ade12c985faf42 324 PANTHER PTHR38418 5 324 1.3E-36 T 22-04-2016 PP4_RS21910 b2e29508785660fd08ade12c985faf42 324 Pfam PF00571 CBS domain 278 321 2.9E-6 T 22-04-2016 IPR000644 CBS domain PP4_RS21910 b2e29508785660fd08ade12c985faf42 324 Pfam PF00571 CBS domain 204 257 5.8E-4 T 22-04-2016 IPR000644 CBS domain PP4_RS21910 b2e29508785660fd08ade12c985faf42 324 Pfam PF01380 SIS domain 41 171 1.6E-32 T 22-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 PP4_RS21910 b2e29508785660fd08ade12c985faf42 324 Gene3D G3DSA:3.40.50.10490 11 195 5.1E-52 T 22-04-2016 PP4_RS21910 b2e29508785660fd08ade12c985faf42 324 SUPERFAMILY SSF53697 6 321 1.38E-70 T 22-04-2016 PP4_RS21910 b2e29508785660fd08ade12c985faf42 324 SMART SM00116 275 323 1.1 T 22-04-2016 IPR000644 CBS domain PP4_RS21910 b2e29508785660fd08ade12c985faf42 324 SMART SM00116 210 258 1.7 T 22-04-2016 IPR000644 CBS domain PP4_RS21910 b2e29508785660fd08ade12c985faf42 324 PIRSF PIRSF004692 1 324 2.1E-132 T 22-04-2016 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 PP4_RS20540 918dfce8bb102023fa54cd94dc69f504 625 SUPERFAMILY SSF69593 391 575 1.57E-26 T 22-04-2016 PP4_RS20540 918dfce8bb102023fa54cd94dc69f504 625 SMART SM00563 458 574 1.1E-24 T 22-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 PP4_RS20540 918dfce8bb102023fa54cd94dc69f504 625 PANTHER PTHR10434:SF15 347 621 5.7E-154 T 22-04-2016 PP4_RS20540 918dfce8bb102023fa54cd94dc69f504 625 SUPERFAMILY SSF103473 11 427 1.57E-23 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS20540 918dfce8bb102023fa54cd94dc69f504 625 Pfam PF01553 Acyltransferase 444 571 6.9E-21 T 22-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 PP4_RS20540 918dfce8bb102023fa54cd94dc69f504 625 Gene3D G3DSA:1.20.1250.20 232 427 5.4E-12 T 22-04-2016 PP4_RS20540 918dfce8bb102023fa54cd94dc69f504 625 Gene3D G3DSA:3.40.1130.10 428 571 3.3E-12 T 22-04-2016 PP4_RS20540 918dfce8bb102023fa54cd94dc69f504 625 Pfam PF07690 Major Facilitator Superfamily 41 388 7.2E-11 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS20540 918dfce8bb102023fa54cd94dc69f504 625 PANTHER PTHR10434 347 621 5.7E-154 T 22-04-2016 PP4_RS20540 918dfce8bb102023fa54cd94dc69f504 625 Gene3D G3DSA:1.20.1250.20 54 202 7.6E-4 T 22-04-2016 PP4_RS00170 e93a0d042cad0b8f6b9104bda3bffd8b 416 SUPERFAMILY SSF111369 114 335 4.05E-23 T 22-04-2016 PP4_RS00170 e93a0d042cad0b8f6b9104bda3bffd8b 416 Gene3D G3DSA:2.40.50.100 226 255 3.6E-13 T 22-04-2016 PP4_RS00170 e93a0d042cad0b8f6b9104bda3bffd8b 416 Gene3D G3DSA:2.40.50.100 117 150 3.6E-13 T 22-04-2016 PP4_RS00170 e93a0d042cad0b8f6b9104bda3bffd8b 416 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 101 331 5.2E-39 T 22-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PP4_RS00170 e93a0d042cad0b8f6b9104bda3bffd8b 416 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 91 404 2.2E-50 T 22-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 PP4_RS00170 e93a0d042cad0b8f6b9104bda3bffd8b 416 PANTHER PTHR30097 36 416 1.3E-111 T 22-04-2016 PP4_RS00170 e93a0d042cad0b8f6b9104bda3bffd8b 416 PANTHER PTHR30097:SF4 36 416 1.3E-111 T 22-04-2016 PP4_RS25635 13c8099722dd1b34f2c6bebebde20419 235 SUPERFAMILY SSF75217 72 234 5.23E-35 T 22-04-2016 IPR029028 Alpha/beta knot methyltransferases PP4_RS25635 13c8099722dd1b34f2c6bebebde20419 235 PANTHER PTHR30027:SF3 9 234 3.7E-40 T 22-04-2016 PP4_RS25635 13c8099722dd1b34f2c6bebebde20419 235 PIRSF PIRSF015601 1 235 1.3E-51 T 22-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PP4_RS25635 13c8099722dd1b34f2c6bebebde20419 235 TIGRFAM TIGR00046 TIGR00046: RNA methyltransferase, RsmE family 11 233 1.6E-23 T 22-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PP4_RS25635 13c8099722dd1b34f2c6bebebde20419 235 PANTHER PTHR30027 9 234 3.7E-40 T 22-04-2016 PP4_RS25635 13c8099722dd1b34f2c6bebebde20419 235 Gene3D G3DSA:3.40.1280.10 2 234 7.2E-57 T 22-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PP4_RS25635 13c8099722dd1b34f2c6bebebde20419 235 Pfam PF04452 RNA methyltransferase 18 234 1.5E-43 T 22-04-2016 IPR006700 Ribosomal RNA small subunit methyltransferase E GO:0006364|GO:0008168 KEGG: 00670+2.1.1.19|MetaCyc: PWY-2201 PP4_RS24510 de24effe48896570c20bd579d5b12f8b 201 Hamap MF_01186 LPS-assembly lipoprotein LptE [lptE]. 3 159 19.196 T 22-04-2016 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 PP4_RS24510 de24effe48896570c20bd579d5b12f8b 201 PANTHER PTHR38098 1 198 8.8E-34 T 22-04-2016 PP4_RS24510 de24effe48896570c20bd579d5b12f8b 201 Gene3D G3DSA:3.30.160.150 18 162 1.1E-22 T 22-04-2016 PP4_RS24510 de24effe48896570c20bd579d5b12f8b 201 Pfam PF04390 Lipopolysaccharide-assembly 10 153 2.8E-15 T 22-04-2016 IPR007485 LPS-assembly lipoprotein LptE GO:0019867|GO:0043165 PP4_RS24510 de24effe48896570c20bd579d5b12f8b 201 PANTHER PTHR38098:SF1 1 198 8.8E-34 T 22-04-2016 PP4_RS26265 43614b1a7a95c3fdc5602c9a3fbc997f 141 Pfam PF10027 Predicted integral membrane protein (DUF2269) 6 140 5.9E-33 T 22-04-2016 IPR018729 Protein of unknown function DUF2269, transmembrane PP4_RS08885 30a651b46cefb18d47e39128a6888a5f 235 Pfam PF04376 Arginine-tRNA-protein transferase, N terminus 15 85 6.6E-20 T 22-04-2016 IPR007471 Arginine-tRNA-protein transferase, N-terminal GO:0004057|GO:0016598 PP4_RS08885 30a651b46cefb18d47e39128a6888a5f 235 Hamap MF_00689 Putative arginyl-tRNA--protein transferase [ate]. 1 235 44.83 T 22-04-2016 IPR017138 Putative arginyl-tRNA--protein transferase, prokaryotic PP4_RS08885 30a651b46cefb18d47e39128a6888a5f 235 SUPERFAMILY SSF55729 80 233 4.62E-25 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS08885 30a651b46cefb18d47e39128a6888a5f 235 PANTHER PTHR21367 12 232 8.0E-76 T 22-04-2016 IPR030700 Arginine-tRNA-protein transferase PP4_RS08885 30a651b46cefb18d47e39128a6888a5f 235 Pfam PF04377 Arginine-tRNA-protein transferase, C terminus 105 226 3.5E-39 T 22-04-2016 IPR007472 Arginine-tRNA-protein transferase, C-terminal GO:0004057|GO:0016598 PP4_RS08885 30a651b46cefb18d47e39128a6888a5f 235 PIRSF PIRSF037208 1 235 4.9E-95 T 22-04-2016 IPR017138 Putative arginyl-tRNA--protein transferase, prokaryotic PP4_RS24915 b79114960da7d2e02573e944ce727701 465 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 20 455 4.0E-175 T 22-04-2016 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 PP4_RS24915 b79114960da7d2e02573e944ce727701 465 SMART SM00382 214 413 0.0013 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS24915 b79114960da7d2e02573e944ce727701 465 SUPERFAMILY SSF48024 18 129 1.03E-38 T 22-04-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 PP4_RS24915 b79114960da7d2e02573e944ce727701 465 Gene3D G3DSA:1.10.860.10 20 122 3.2E-38 T 22-04-2016 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal PP4_RS24915 b79114960da7d2e02573e944ce727701 465 Pfam PF03796 DnaB-like helicase C terminal domain 197 453 1.8E-117 T 22-04-2016 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 PP4_RS24915 b79114960da7d2e02573e944ce727701 465 PANTHER PTHR30153 4 463 9.9E-220 T 22-04-2016 PP4_RS24915 b79114960da7d2e02573e944ce727701 465 SUPERFAMILY SSF52540 195 446 1.45E-53 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS24915 b79114960da7d2e02573e944ce727701 465 Pfam PF00772 DnaB-like helicase N terminal domain 20 121 2.6E-35 T 22-04-2016 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 PP4_RS24915 b79114960da7d2e02573e944ce727701 465 Gene3D G3DSA:3.40.50.300 182 455 8.1E-108 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS17050 b7f7cb04b92392e4d768b7c6b0c3c13e 445 PANTHER PTHR34596 1 444 8.9E-138 T 22-04-2016 PP4_RS17050 b7f7cb04b92392e4d768b7c6b0c3c13e 445 Gene3D G3DSA:2.40.160.10 32 441 1.8E-128 T 22-04-2016 IPR023614 Porin domain PP4_RS17050 b7f7cb04b92392e4d768b7c6b0c3c13e 445 Pfam PF03573 outer membrane porin, OprD family 27 442 4.1E-137 T 22-04-2016 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 PP4_RS04550 65652e3e310f6f53ffbdeaddb0f4bc2a 349 Gene3D G3DSA:3.20.20.70 1 349 1.5E-130 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS04550 65652e3e310f6f53ffbdeaddb0f4bc2a 349 PANTHER PTHR22893 1 349 5.5E-169 T 22-04-2016 PP4_RS04550 65652e3e310f6f53ffbdeaddb0f4bc2a 349 PANTHER PTHR22893:SF14 1 349 5.5E-169 T 22-04-2016 PP4_RS04550 65652e3e310f6f53ffbdeaddb0f4bc2a 349 SUPERFAMILY SSF51395 1 348 2.71E-121 T 22-04-2016 PP4_RS04550 65652e3e310f6f53ffbdeaddb0f4bc2a 349 Pfam PF00724 NADH:flavin oxidoreductase / NADH oxidase family 4 328 1.2E-81 T 22-04-2016 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal GO:0010181|GO:0016491|GO:0055114 PP4_RS04610 f944112e619b2c3a67b9c6d47ea06bcf 196 Gene3D G3DSA:3.40.630.30 14 170 1.5E-12 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS04610 f944112e619b2c3a67b9c6d47ea06bcf 196 SUPERFAMILY SSF55729 14 172 2.13E-14 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS02835 96f54ae87da58783a9b696900e4423b0 221 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 199 2.5E-67 T 22-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PP4_RS02835 96f54ae87da58783a9b696900e4423b0 221 Gene3D G3DSA:2.40.30.20 5 104 1.0E-29 T 22-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PP4_RS02835 96f54ae87da58783a9b696900e4423b0 221 Gene3D G3DSA:2.40.30.20 105 194 5.5E-32 T 22-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PP4_RS02835 96f54ae87da58783a9b696900e4423b0 221 Pfam PF00677 Lumazine binding domain 100 184 3.2E-21 T 22-04-2016 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PP4_RS02835 96f54ae87da58783a9b696900e4423b0 221 Pfam PF00677 Lumazine binding domain 3 87 1.9E-20 T 22-04-2016 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PP4_RS02835 96f54ae87da58783a9b696900e4423b0 221 SUPERFAMILY SSF63380 93 194 5.7E-32 T 22-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 PP4_RS02835 96f54ae87da58783a9b696900e4423b0 221 PANTHER PTHR21098 1 221 6.8E-104 T 22-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PP4_RS02835 96f54ae87da58783a9b696900e4423b0 221 PIRSF PIRSF000498 1 213 1.3E-76 T 22-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PP4_RS02835 96f54ae87da58783a9b696900e4423b0 221 SUPERFAMILY SSF63380 1 89 1.02E-24 T 22-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 PP4_RS11310 bcb49bf806c1873002ac9e83fa21a7a3 303 TIGRFAM TIGR03249 KdgD: 5-dehydro-4-deoxyglucarate dehydratase 3 300 9.5E-134 T 22-04-2016 IPR017655 5-dehydro-4-deoxyglucarate dehydratase GO:0016052|GO:0047448 KEGG: 00053+4.2.1.41|MetaCyc: PWY-6486|MetaCyc: PWY-6497|MetaCyc: PWY-6499|MetaCyc: PWY-6501|UniPathway: UPA00564 PP4_RS11310 bcb49bf806c1873002ac9e83fa21a7a3 303 SUPERFAMILY SSF51569 12 300 3.56E-67 T 22-04-2016 PP4_RS11310 bcb49bf806c1873002ac9e83fa21a7a3 303 Pfam PF00701 Dihydrodipicolinate synthetase family 12 298 5.9E-53 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS11310 bcb49bf806c1873002ac9e83fa21a7a3 303 PANTHER PTHR12128:SF19 1 300 4.7E-120 T 22-04-2016 PP4_RS11310 bcb49bf806c1873002ac9e83fa21a7a3 303 Gene3D G3DSA:3.20.20.70 12 300 5.4E-75 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS11310 bcb49bf806c1873002ac9e83fa21a7a3 303 SMART SM01130 10 301 1.1E-75 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS11310 bcb49bf806c1873002ac9e83fa21a7a3 303 PANTHER PTHR12128 1 300 4.7E-120 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS11310 bcb49bf806c1873002ac9e83fa21a7a3 303 PIRSF PIRSF001365 6 303 3.0E-57 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS11310 bcb49bf806c1873002ac9e83fa21a7a3 303 Hamap MF_00694 Probable 5-dehydro-4-deoxyglucarate dehydratase. 4 302 51.93 T 22-04-2016 IPR017655 5-dehydro-4-deoxyglucarate dehydratase GO:0016052|GO:0047448 KEGG: 00053+4.2.1.41|MetaCyc: PWY-6486|MetaCyc: PWY-6497|MetaCyc: PWY-6499|MetaCyc: PWY-6501|UniPathway: UPA00564 PP4_RS14440 6e3067c890d380590d74ecedd9307c75 156 PANTHER PTHR23416:SF58 11 155 3.5E-49 T 22-04-2016 PP4_RS14440 6e3067c890d380590d74ecedd9307c75 156 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 105 133 - T 22-04-2016 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: REACT_17015 PP4_RS14440 6e3067c890d380590d74ecedd9307c75 156 SUPERFAMILY SSF51161 25 153 1.8E-42 T 22-04-2016 IPR011004 Trimeric LpxA-like PP4_RS14440 6e3067c890d380590d74ecedd9307c75 156 Gene3D G3DSA:2.160.10.10 15 152 5.1E-46 T 22-04-2016 PP4_RS14440 6e3067c890d380590d74ecedd9307c75 156 PANTHER PTHR23416 11 155 3.5E-49 T 22-04-2016 PP4_RS14440 6e3067c890d380590d74ecedd9307c75 156 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 96 131 6.8E-11 T 22-04-2016 IPR001451 Hexapeptide repeat PP4_RS08560 4d35e1ac6cea6c324511de1a52b9651a 134 Pfam PF03519 Invasion protein B family 17 76 4.1E-12 T 22-04-2016 IPR003065 Surface presentation of antigens protein SpaK PP4_RS08560 4d35e1ac6cea6c324511de1a52b9651a 134 SUPERFAMILY SSF69635 1 130 1.52E-23 T 22-04-2016 PP4_RS08560 4d35e1ac6cea6c324511de1a52b9651a 134 Gene3D G3DSA:3.30.1460.10 1 131 8.7E-27 T 22-04-2016 PP4_RS00660 cbfc8c339c0ced8e2f263e1adcaff19a 312 Pfam PF02470 MlaD protein 39 115 1.4E-14 T 22-04-2016 IPR003399 Mce/MlaD PP4_RS00660 cbfc8c339c0ced8e2f263e1adcaff19a 312 PANTHER PTHR36698 2 312 1.8E-90 T 22-04-2016 PP4_RS00660 cbfc8c339c0ced8e2f263e1adcaff19a 312 PANTHER PTHR36698:SF2 2 312 1.8E-90 T 22-04-2016 PP4_RS19045 8421d87528722227808bc62a2038e72c 365 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 65 265 6.1E-26 T 22-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PP4_RS19045 8421d87528722227808bc62a2038e72c 365 Gene3D G3DSA:2.40.50.100 160 191 1.6E-14 T 22-04-2016 PP4_RS19045 8421d87528722227808bc62a2038e72c 365 Gene3D G3DSA:2.40.50.100 65 99 1.6E-14 T 22-04-2016 PP4_RS19045 8421d87528722227808bc62a2038e72c 365 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 41 350 2.6E-71 T 22-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 PP4_RS19045 8421d87528722227808bc62a2038e72c 365 PANTHER PTHR30469 32 361 1.2E-121 T 22-04-2016 PP4_RS19045 8421d87528722227808bc62a2038e72c 365 PANTHER PTHR30469:SF5 32 361 1.2E-121 T 22-04-2016 PP4_RS19045 8421d87528722227808bc62a2038e72c 365 SUPERFAMILY SSF111369 58 270 1.22E-35 T 22-04-2016 PP4_RS13355 9481cf506c0011c6a0bd00a2a44d1eb8 244 SUPERFAMILY SSF102588 6 243 1.44E-49 T 22-04-2016 IPR024078 Putative deacetylase LmbE-like domain PP4_RS13355 9481cf506c0011c6a0bd00a2a44d1eb8 244 PANTHER PTHR12993:SF11 2 220 4.8E-52 T 22-04-2016 PP4_RS13355 9481cf506c0011c6a0bd00a2a44d1eb8 244 Gene3D G3DSA:3.40.50.10320 5 242 2.2E-48 T 22-04-2016 IPR024078 Putative deacetylase LmbE-like domain PP4_RS13355 9481cf506c0011c6a0bd00a2a44d1eb8 244 Pfam PF02585 GlcNAc-PI de-N-acetylase 9 137 1.4E-21 T 22-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related PP4_RS13355 9481cf506c0011c6a0bd00a2a44d1eb8 244 PANTHER PTHR12993 2 220 4.8E-52 T 22-04-2016 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related PP4_RS08595 a8c7b3805fc85b6b64dab452726c752e 325 Gene3D G3DSA:3.40.190.10 204 280 6.9E-13 T 22-04-2016 PP4_RS08595 a8c7b3805fc85b6b64dab452726c752e 325 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 24 83 9.3E-20 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS08595 a8c7b3805fc85b6b64dab452726c752e 325 Gene3D G3DSA:3.40.190.10 110 203 8.4E-13 T 22-04-2016 PP4_RS08595 a8c7b3805fc85b6b64dab452726c752e 325 SUPERFAMILY SSF53850 110 316 1.35E-33 T 22-04-2016 PP4_RS08595 a8c7b3805fc85b6b64dab452726c752e 325 SUPERFAMILY SSF46785 20 99 4.03E-20 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS08595 a8c7b3805fc85b6b64dab452726c752e 325 PANTHER PTHR30126 22 325 2.9E-51 T 22-04-2016 PP4_RS08595 a8c7b3805fc85b6b64dab452726c752e 325 Gene3D G3DSA:1.10.10.10 20 98 1.8E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS08595 a8c7b3805fc85b6b64dab452726c752e 325 Pfam PF03466 LysR substrate binding domain 109 314 8.2E-30 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS08595 a8c7b3805fc85b6b64dab452726c752e 325 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 60 71 5.2E-9 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS08595 a8c7b3805fc85b6b64dab452726c752e 325 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 5.2E-9 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS08595 a8c7b3805fc85b6b64dab452726c752e 325 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 50 60 5.2E-9 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS00950 f99a121623f8d8018493e6336bdc1be5 313 Pfam PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain 6 212 2.8E-78 T 22-04-2016 IPR022417 Porphobilinogen deaminase, N-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PP4_RS00950 f99a121623f8d8018493e6336bdc1be5 313 SUPERFAMILY SSF53850 4 219 2.35E-83 T 22-04-2016 PP4_RS00950 f99a121623f8d8018493e6336bdc1be5 313 Gene3D G3DSA:3.40.190.10 111 199 1.8E-39 T 22-04-2016 PP4_RS00950 f99a121623f8d8018493e6336bdc1be5 313 Gene3D G3DSA:3.30.160.40 221 306 1.5E-25 T 22-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PP4_RS00950 f99a121623f8d8018493e6336bdc1be5 313 Gene3D G3DSA:3.40.190.10 3 110 1.8E-47 T 22-04-2016 PP4_RS00950 f99a121623f8d8018493e6336bdc1be5 313 TIGRFAM TIGR00212 hemC: hydroxymethylbilane synthase 6 297 2.9E-109 T 22-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PP4_RS00950 f99a121623f8d8018493e6336bdc1be5 313 ProSitePatterns PS00533 Porphobilinogen deaminase cofactor-binding site. 231 247 - T 22-04-2016 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site GO:0004418|GO:0018160|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PP4_RS00950 f99a121623f8d8018493e6336bdc1be5 313 PANTHER PTHR11557 4 307 4.2E-158 T 22-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PP4_RS00950 f99a121623f8d8018493e6336bdc1be5 313 PIRSF PIRSF001438 1 311 1.6E-117 T 22-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PP4_RS00950 f99a121623f8d8018493e6336bdc1be5 313 Hamap MF_00260 Porphobilinogen deaminase [hemC]. 5 297 38.557 T 22-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PP4_RS00950 f99a121623f8d8018493e6336bdc1be5 313 Pfam PF03900 Porphobilinogen deaminase, C-terminal domain 227 295 3.7E-19 T 22-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PP4_RS00950 f99a121623f8d8018493e6336bdc1be5 313 SUPERFAMILY SSF54782 220 309 2.22E-26 T 22-04-2016 IPR022418 Porphobilinogen deaminase, C-terminal GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PP4_RS00950 f99a121623f8d8018493e6336bdc1be5 313 PRINTS PR00151 Porphobilinogen deaminase signature 143 160 6.5E-51 T 22-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PP4_RS00950 f99a121623f8d8018493e6336bdc1be5 313 PRINTS PR00151 Porphobilinogen deaminase signature 76 95 6.5E-51 T 22-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PP4_RS00950 f99a121623f8d8018493e6336bdc1be5 313 PRINTS PR00151 Porphobilinogen deaminase signature 124 141 6.5E-51 T 22-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PP4_RS00950 f99a121623f8d8018493e6336bdc1be5 313 PRINTS PR00151 Porphobilinogen deaminase signature 45 65 6.5E-51 T 22-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PP4_RS00950 f99a121623f8d8018493e6336bdc1be5 313 PRINTS PR00151 Porphobilinogen deaminase signature 230 247 6.5E-51 T 22-04-2016 IPR000860 Porphobilinogen deaminase GO:0004418|GO:0033014 KEGG: 00860+2.5.1.61|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PP4_RS24960 a305d19966e1e25d3da7ac946984aa5a 337 Gene3D G3DSA:3.40.190.10 132 269 9.7E-50 T 22-04-2016 PP4_RS24960 a305d19966e1e25d3da7ac946984aa5a 337 SUPERFAMILY SSF53850 33 325 7.71E-72 T 22-04-2016 PP4_RS24960 a305d19966e1e25d3da7ac946984aa5a 337 PANTHER PTHR30006:SF6 12 329 2.3E-91 T 22-04-2016 PP4_RS24960 a305d19966e1e25d3da7ac946984aa5a 337 Pfam PF13343 Bacterial extracellular solute-binding protein 82 296 1.5E-26 T 22-04-2016 PP4_RS24960 a305d19966e1e25d3da7ac946984aa5a 337 PIRSF PIRSF002825 7 337 5.5E-83 T 22-04-2016 IPR026045 Ferric binding protein PP4_RS24960 a305d19966e1e25d3da7ac946984aa5a 337 PANTHER PTHR30006 12 329 2.3E-91 T 22-04-2016 PP4_RS24960 a305d19966e1e25d3da7ac946984aa5a 337 Gene3D G3DSA:3.40.190.10 270 322 4.2E-32 T 22-04-2016 PP4_RS24960 a305d19966e1e25d3da7ac946984aa5a 337 Gene3D G3DSA:3.40.190.10 12 128 4.2E-32 T 22-04-2016 PP4_RS16210 5ae80c8f178e35f5f1e4811a1d1cb35d 869 Gene3D G3DSA:3.90.550.10 274 507 1.9E-22 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS16210 5ae80c8f178e35f5f1e4811a1d1cb35d 869 PRINTS PR01439 Cellulose synthase subunit A signature 667 688 2.9E-59 T 22-04-2016 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001|UniPathway: UPA00694 PP4_RS16210 5ae80c8f178e35f5f1e4811a1d1cb35d 869 PRINTS PR01439 Cellulose synthase subunit A signature 282 301 2.9E-59 T 22-04-2016 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001|UniPathway: UPA00694 PP4_RS16210 5ae80c8f178e35f5f1e4811a1d1cb35d 869 PRINTS PR01439 Cellulose synthase subunit A signature 227 252 2.9E-59 T 22-04-2016 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001|UniPathway: UPA00694 PP4_RS16210 5ae80c8f178e35f5f1e4811a1d1cb35d 869 PRINTS PR01439 Cellulose synthase subunit A signature 199 219 2.9E-59 T 22-04-2016 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001|UniPathway: UPA00694 PP4_RS16210 5ae80c8f178e35f5f1e4811a1d1cb35d 869 PRINTS PR01439 Cellulose synthase subunit A signature 553 572 2.9E-59 T 22-04-2016 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001|UniPathway: UPA00694 PP4_RS16210 5ae80c8f178e35f5f1e4811a1d1cb35d 869 PRINTS PR01439 Cellulose synthase subunit A signature 524 550 2.9E-59 T 22-04-2016 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001|UniPathway: UPA00694 PP4_RS16210 5ae80c8f178e35f5f1e4811a1d1cb35d 869 PRINTS PR01439 Cellulose synthase subunit A signature 593 612 2.9E-59 T 22-04-2016 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001|UniPathway: UPA00694 PP4_RS16210 5ae80c8f178e35f5f1e4811a1d1cb35d 869 PRINTS PR01439 Cellulose synthase subunit A signature 363 387 2.9E-59 T 22-04-2016 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001|UniPathway: UPA00694 PP4_RS16210 5ae80c8f178e35f5f1e4811a1d1cb35d 869 SUPERFAMILY SSF141371 696 786 3.14E-9 T 22-04-2016 PP4_RS16210 5ae80c8f178e35f5f1e4811a1d1cb35d 869 PANTHER PTHR10587 179 705 9.2E-110 T 22-04-2016 PP4_RS16210 5ae80c8f178e35f5f1e4811a1d1cb35d 869 PANTHER PTHR10587:SF94 179 705 9.2E-110 T 22-04-2016 PP4_RS16210 5ae80c8f178e35f5f1e4811a1d1cb35d 869 Pfam PF07238 PilZ domain 694 790 2.9E-11 T 22-04-2016 IPR009875 PilZ domain GO:0035438 PP4_RS16210 5ae80c8f178e35f5f1e4811a1d1cb35d 869 Pfam PF00535 Glycosyl transferase family 2 278 446 3.2E-33 T 22-04-2016 IPR001173 Glycosyltransferase 2-like PP4_RS16210 5ae80c8f178e35f5f1e4811a1d1cb35d 869 TIGRFAM TIGR03030 CelA: cellulose synthase catalytic subunit (UDP-forming) 154 825 2.3E-276 T 22-04-2016 IPR003919 Cellulose synthase, subunit A GO:0006011|GO:0016020|GO:0016759|GO:0035438 KEGG: 00500+2.4.1.12|MetaCyc: PWY-1001|UniPathway: UPA00694 PP4_RS16210 5ae80c8f178e35f5f1e4811a1d1cb35d 869 SUPERFAMILY SSF53448 272 550 8.84E-50 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS00700 cb0205a28a7a2f21c7c66e6efd45766d 133 PANTHER PTHR33337:SF4 4 131 1.4E-40 T 22-04-2016 PP4_RS00700 cb0205a28a7a2f21c7c66e6efd45766d 133 PANTHER PTHR33337 4 131 1.4E-40 T 22-04-2016 PP4_RS00700 cb0205a28a7a2f21c7c66e6efd45766d 133 Gene3D G3DSA:3.90.1590.10 3 130 1.9E-36 T 22-04-2016 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 PP4_RS00700 cb0205a28a7a2f21c7c66e6efd45766d 133 Pfam PF04828 Glutathione-dependent formaldehyde-activating enzyme 27 113 8.8E-19 T 22-04-2016 IPR006913 Glutathione-dependent formaldehyde-activating enzyme/centromere protein V GO:0008152|GO:0016846 KEGG: 00680+4.4.1.22|MetaCyc: PWY-1801|UniPathway: UPA00562 PP4_RS00700 cb0205a28a7a2f21c7c66e6efd45766d 133 SUPERFAMILY SSF51316 3 130 1.46E-40 T 22-04-2016 IPR011057 Mss4-like PP4_RS22155 35e1307e368e8e4f12934d1b79990f1e 109 Pfam PF13744 Helix-turn-helix domain 12 87 1.1E-10 T 22-04-2016 PP4_RS22155 35e1307e368e8e4f12934d1b79990f1e 109 Gene3D G3DSA:1.10.260.40 34 86 3.6E-11 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS22155 35e1307e368e8e4f12934d1b79990f1e 109 SMART SM00530 33 87 5.3E-6 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS22155 35e1307e368e8e4f12934d1b79990f1e 109 SUPERFAMILY SSF47413 33 92 1.91E-11 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS17325 6c4a18c0d2fe8c800fcfc4ed46f1c09e 260 PANTHER PTHR30035:SF3 42 242 4.1E-45 T 22-04-2016 PP4_RS17325 6c4a18c0d2fe8c800fcfc4ed46f1c09e 260 PRINTS PR01805 VacJ lipoprotein signature 148 165 2.6E-20 T 22-04-2016 IPR007428 MlaA lipoprotein GO:0016020 PP4_RS17325 6c4a18c0d2fe8c800fcfc4ed46f1c09e 260 PRINTS PR01805 VacJ lipoprotein signature 62 78 2.6E-20 T 22-04-2016 IPR007428 MlaA lipoprotein GO:0016020 PP4_RS17325 6c4a18c0d2fe8c800fcfc4ed46f1c09e 260 PRINTS PR01805 VacJ lipoprotein signature 45 58 2.6E-20 T 22-04-2016 IPR007428 MlaA lipoprotein GO:0016020 PP4_RS17325 6c4a18c0d2fe8c800fcfc4ed46f1c09e 260 PRINTS PR01805 VacJ lipoprotein signature 112 129 2.6E-20 T 22-04-2016 IPR007428 MlaA lipoprotein GO:0016020 PP4_RS17325 6c4a18c0d2fe8c800fcfc4ed46f1c09e 260 Pfam PF04333 MlaA lipoprotein 44 236 1.3E-60 T 22-04-2016 IPR007428 MlaA lipoprotein GO:0016020 PP4_RS17325 6c4a18c0d2fe8c800fcfc4ed46f1c09e 260 PANTHER PTHR30035 42 242 4.1E-45 T 22-04-2016 IPR007428 MlaA lipoprotein GO:0016020 PP4_RS21965 c5075cd35342cd9a3056f8d6e47bce25 203 PIRSF PIRSF000349 1 203 1.5E-80 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PP4_RS21965 c5075cd35342cd9a3056f8d6e47bce25 203 SUPERFAMILY SSF46609 1 90 3.14E-37 T 22-04-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PP4_RS21965 c5075cd35342cd9a3056f8d6e47bce25 203 ProSitePatterns PS00088 Manganese and iron superoxide dismutases signature. 164 171 - T 22-04-2016 IPR019833 Manganese/iron superoxide dismutase, binding site GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PP4_RS21965 c5075cd35342cd9a3056f8d6e47bce25 203 PANTHER PTHR11404 1 203 1.2E-105 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PP4_RS21965 c5075cd35342cd9a3056f8d6e47bce25 203 Pfam PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain 3 89 6.9E-33 T 22-04-2016 IPR019831 Manganese/iron superoxide dismutase, N-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PP4_RS21965 c5075cd35342cd9a3056f8d6e47bce25 203 Pfam PF02777 Iron/manganese superoxide dismutases, C-terminal domain 96 197 2.1E-38 T 22-04-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PP4_RS21965 c5075cd35342cd9a3056f8d6e47bce25 203 SUPERFAMILY SSF54719 88 202 1.44E-43 T 22-04-2016 IPR019832 Manganese/iron superoxide dismutase, C-terminal GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PP4_RS21965 c5075cd35342cd9a3056f8d6e47bce25 203 PRINTS PR01703 Manganese superoxide dismutase signature 125 133 5.1E-27 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PP4_RS21965 c5075cd35342cd9a3056f8d6e47bce25 203 PRINTS PR01703 Manganese superoxide dismutase signature 27 40 5.1E-27 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PP4_RS21965 c5075cd35342cd9a3056f8d6e47bce25 203 PRINTS PR01703 Manganese superoxide dismutase signature 6 17 5.1E-27 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PP4_RS21965 c5075cd35342cd9a3056f8d6e47bce25 203 PRINTS PR01703 Manganese superoxide dismutase signature 162 174 5.1E-27 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PP4_RS21965 c5075cd35342cd9a3056f8d6e47bce25 203 PRINTS PR01703 Manganese superoxide dismutase signature 72 85 5.1E-27 T 22-04-2016 IPR001189 Manganese/iron superoxide dismutase GO:0004784|GO:0006801|GO:0046872|GO:0055114 MetaCyc: PWY-6854 PP4_RS21965 c5075cd35342cd9a3056f8d6e47bce25 203 Gene3D G3DSA:1.10.287.990 20 89 4.1E-29 T 22-04-2016 PP4_RS15300 b048ed6f6cb50113f303169272665960 336 Pfam PF13581 Histidine kinase-like ATPase domain 15 129 1.4E-9 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS15300 b048ed6f6cb50113f303169272665960 336 SMART SM00331 141 331 0.0033 T 22-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 PP4_RS15300 b048ed6f6cb50113f303169272665960 336 SUPERFAMILY SSF81606 146 331 4.97E-12 T 22-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 PP4_RS15300 b048ed6f6cb50113f303169272665960 336 PANTHER PTHR35801 1 336 9.0E-57 T 22-04-2016 PP4_RS15300 b048ed6f6cb50113f303169272665960 336 SUPERFAMILY SSF55874 21 112 4.14E-6 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS15300 b048ed6f6cb50113f303169272665960 336 Gene3D G3DSA:3.30.565.10 19 120 0.001 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS15300 b048ed6f6cb50113f303169272665960 336 PANTHER PTHR35801:SF1 1 336 9.0E-57 T 22-04-2016 PP4_RS07345 1eb6e582cffbaa2df93a3fd64426da77 894 SUPERFAMILY SSF53448 589 852 8.44E-37 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS07345 1eb6e582cffbaa2df93a3fd64426da77 894 Pfam PF04488 Glycosyltransferase sugar-binding region containing DXD motif 668 729 3.3E-6 T 22-04-2016 IPR007577 Glycosyltransferase, DXD sugar-binding motif PP4_RS02765 e53f42227233c87a9f2792b7bd549165 147 Pfam PF01638 HxlR-like helix-turn-helix 17 102 1.4E-18 T 22-04-2016 IPR002577 Helix-turn-helix, HxlR type PP4_RS02765 e53f42227233c87a9f2792b7bd549165 147 PANTHER PTHR33204:SF3 5 138 3.2E-56 T 22-04-2016 PP4_RS02765 e53f42227233c87a9f2792b7bd549165 147 PANTHER PTHR33204 5 138 3.2E-56 T 22-04-2016 PP4_RS02765 e53f42227233c87a9f2792b7bd549165 147 SUPERFAMILY SSF46785 5 140 2.1E-36 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS02765 e53f42227233c87a9f2792b7bd549165 147 Gene3D G3DSA:1.10.10.10 4 111 2.7E-28 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS20525 9b72527b90114d33f09100f49add43b0 306 Pfam PF04381 Putative exonuclease, RdgC 1 300 1.1E-113 T 22-04-2016 IPR007476 Putative exonuclease, RdgC GO:0006310 PP4_RS20525 9b72527b90114d33f09100f49add43b0 306 PANTHER PTHR38103:SF1 2 305 3.1E-144 T 22-04-2016 PP4_RS20525 9b72527b90114d33f09100f49add43b0 306 PANTHER PTHR38103 2 305 3.1E-144 T 22-04-2016 PP4_RS20525 9b72527b90114d33f09100f49add43b0 306 Hamap MF_00194 Recombination-associated protein RdgC [rdgC]. 1 302 42.091 T 22-04-2016 IPR007476 Putative exonuclease, RdgC GO:0006310 PP4_RS02115 d31fbe6219dd7c8dca4fab0dd36cebb2 177 Gene3D G3DSA:3.30.2020.10 2 87 2.5E-23 T 22-04-2016 IPR018841 Protein of unknown function DUF2442 PP4_RS02115 d31fbe6219dd7c8dca4fab0dd36cebb2 177 SUPERFAMILY SSF47413 92 145 3.21E-15 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS02115 d31fbe6219dd7c8dca4fab0dd36cebb2 177 SUPERFAMILY SSF143880 6 87 3.27E-16 T 22-04-2016 IPR018841 Protein of unknown function DUF2442 PP4_RS02115 d31fbe6219dd7c8dca4fab0dd36cebb2 177 Gene3D G3DSA:1.10.260.40 90 154 6.7E-23 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS02115 d31fbe6219dd7c8dca4fab0dd36cebb2 177 Pfam PF10387 Protein of unknown function (DUF2442) 9 83 2.5E-10 T 22-04-2016 IPR018841 Protein of unknown function DUF2442 PP4_RS05145 3009f766c47d52f773010b4502f039b8 223 Gene3D G3DSA:1.10.3720.10 13 221 9.9E-42 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS05145 3009f766c47d52f773010b4502f039b8 223 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 116 1.5E-24 T 22-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PP4_RS05145 3009f766c47d52f773010b4502f039b8 223 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 222 5.0E-21 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS05145 3009f766c47d52f773010b4502f039b8 223 SUPERFAMILY SSF161098 13 213 5.76E-39 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS05145 3009f766c47d52f773010b4502f039b8 223 PANTHER PTHR30614 1 223 1.5E-129 T 22-04-2016 PP4_RS05145 3009f766c47d52f773010b4502f039b8 223 PANTHER PTHR30614:SF1 1 223 1.5E-129 T 22-04-2016 IPR030205 Glutamate/aspartate transport system permease protein GltK/AatM GO:0006865|GO:0016021|GO:0043190 PP4_RS09410 61191e96e672076129848ed909839b56 340 Gene3D G3DSA:3.90.15.10 94 224 4.1E-43 T 22-04-2016 IPR014711 DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type GO:0003677|GO:0003917|GO:0006265 PP4_RS09410 61191e96e672076129848ed909839b56 340 Pfam PF01028 Eukaryotic DNA topoisomerase I, catalytic core 89 298 1.9E-32 T 22-04-2016 IPR013500 DNA topoisomerase I, catalytic core, eukaryotic-type GO:0003677|GO:0003918|GO:0006265 PP4_RS09410 61191e96e672076129848ed909839b56 340 SUPERFAMILY SSF56349 85 321 6.36E-72 T 22-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 PP4_RS09410 61191e96e672076129848ed909839b56 340 SUPERFAMILY SSF55869 29 90 1.1E-22 T 22-04-2016 PP4_RS09410 61191e96e672076129848ed909839b56 340 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 288 299 2.6E-8 T 22-04-2016 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 PP4_RS09410 61191e96e672076129848ed909839b56 340 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 129 148 2.6E-8 T 22-04-2016 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 PP4_RS09410 61191e96e672076129848ed909839b56 340 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 173 189 2.6E-8 T 22-04-2016 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 PP4_RS09410 61191e96e672076129848ed909839b56 340 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 152 166 2.6E-8 T 22-04-2016 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 PP4_RS09410 61191e96e672076129848ed909839b56 340 PRINTS PR00416 Eukaryotic DNA topoisomerase I signature 238 252 2.6E-8 T 22-04-2016 IPR001631 DNA topoisomerase I GO:0003677|GO:0003917|GO:0006265 PP4_RS09410 61191e96e672076129848ed909839b56 340 Gene3D G3DSA:1.20.120.380 239 315 1.2E-26 T 22-04-2016 IPR027362 DNA topoisomerase I catalytic fragment, domain 2 PP4_RS02540 32daa1d8818bbe96f99c32a013954368 137 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 4.7E-47 T 22-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 PP4_RS02540 32daa1d8818bbe96f99c32a013954368 137 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 126 4.8E-59 T 22-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 PP4_RS02540 32daa1d8818bbe96f99c32a013954368 137 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 37.923 T 22-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 PP4_RS02540 32daa1d8818bbe96f99c32a013954368 137 SUPERFAMILY SSF54686 1 134 4.45E-52 T 22-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 PP4_RS02540 32daa1d8818bbe96f99c32a013954368 137 Gene3D G3DSA:3.90.1170.10 23 134 9.2E-52 T 22-04-2016 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 PP4_RS02540 32daa1d8818bbe96f99c32a013954368 137 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 22-04-2016 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02540 32daa1d8818bbe96f99c32a013954368 137 PANTHER PTHR12220 1 137 8.6E-72 T 22-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 PP4_RS02540 32daa1d8818bbe96f99c32a013954368 137 PRINTS PR00060 Ribosomal protein L16 signature 58 87 2.1E-39 T 22-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 PP4_RS02540 32daa1d8818bbe96f99c32a013954368 137 PRINTS PR00060 Ribosomal protein L16 signature 88 117 2.1E-39 T 22-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 PP4_RS02540 32daa1d8818bbe96f99c32a013954368 137 PRINTS PR00060 Ribosomal protein L16 signature 42 53 2.1E-39 T 22-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 PP4_RS02540 32daa1d8818bbe96f99c32a013954368 137 PRINTS PR00060 Ribosomal protein L16 signature 24 36 2.1E-39 T 22-04-2016 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 PP4_RS02540 32daa1d8818bbe96f99c32a013954368 137 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 22-04-2016 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS03500 9a93343b6e3dc788be4ea59a8af2ce99 135 PANTHER PTHR34873 1 135 1.5E-23 T 22-04-2016 PP4_RS03500 9a93343b6e3dc788be4ea59a8af2ce99 135 PANTHER PTHR34873:SF2 1 135 1.5E-23 T 22-04-2016 PP4_RS03500 9a93343b6e3dc788be4ea59a8af2ce99 135 SUPERFAMILY SSF143100 1 66 1.96E-18 T 22-04-2016 PP4_RS03500 9a93343b6e3dc788be4ea59a8af2ce99 135 Pfam PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system 4 127 4.3E-44 T 22-04-2016 IPR031807 HicB-like antitoxin of toxin-antitoxin system PP4_RS15535 fca192a0d525db0cc54e20ddf11d0b61 497 Gene3D G3DSA:2.60.120.600 324 494 3.5E-50 T 22-04-2016 IPR010621 Domain of unknown function DUF1214 PP4_RS15535 fca192a0d525db0cc54e20ddf11d0b61 497 PANTHER PTHR36509:SF1 35 494 5.3E-80 T 22-04-2016 PP4_RS15535 fca192a0d525db0cc54e20ddf11d0b61 497 SUPERFAMILY SSF160935 34 494 4.32E-124 T 22-04-2016 PP4_RS15535 fca192a0d525db0cc54e20ddf11d0b61 497 Pfam PF06863 Protein of unknown function (DUF1254) 86 223 1.8E-28 T 22-04-2016 IPR010679 Domain of unknown function DUF1254 PP4_RS15535 fca192a0d525db0cc54e20ddf11d0b61 497 Gene3D G3DSA:1.10.3360.10 229 312 2.7E-29 T 22-04-2016 IPR023289 VPA0735-like domain PP4_RS15535 fca192a0d525db0cc54e20ddf11d0b61 497 Gene3D G3DSA:2.60.40.1610 85 228 3.2E-50 T 22-04-2016 IPR010679 Domain of unknown function DUF1254 PP4_RS15535 fca192a0d525db0cc54e20ddf11d0b61 497 Pfam PF06742 Protein of unknown function (DUF1214) 377 482 1.9E-28 T 22-04-2016 IPR010621 Domain of unknown function DUF1214 PP4_RS15535 fca192a0d525db0cc54e20ddf11d0b61 497 PANTHER PTHR36509 35 494 5.3E-80 T 22-04-2016 PP4_RS20535 fc6b6a689bf00fa952b5a329b5f148d6 105 Pfam PF00893 Small Multidrug Resistance protein 1 93 9.1E-30 T 22-04-2016 IPR000390 Small multidrug resistance protein family GO:0016021 PP4_RS20535 fc6b6a689bf00fa952b5a329b5f148d6 105 PANTHER PTHR30561:SF0 1 103 1.2E-48 T 22-04-2016 PP4_RS20535 fc6b6a689bf00fa952b5a329b5f148d6 105 SUPERFAMILY SSF103481 5 102 9.68E-19 T 22-04-2016 PP4_RS20535 fc6b6a689bf00fa952b5a329b5f148d6 105 PANTHER PTHR30561 1 103 1.2E-48 T 22-04-2016 PP4_RS07465 5bee516c347b038fada145cff41b61e9 674 SUPERFAMILY SSF50182 502 565 4.25E-10 T 22-04-2016 IPR010920 LSM domain PP4_RS07465 5bee516c347b038fada145cff41b61e9 674 PANTHER PTHR30460 252 655 2.7E-97 T 22-04-2016 PP4_RS07465 5bee516c347b038fada145cff41b61e9 674 SUPERFAMILY SSF82861 416 500 1.44E-13 T 22-04-2016 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 PP4_RS07465 5bee516c347b038fada145cff41b61e9 674 Pfam PF00924 Mechanosensitive ion channel 459 655 3.3E-35 T 22-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 PP4_RS07465 5bee516c347b038fada145cff41b61e9 674 Gene3D G3DSA:2.30.30.60 518 564 1.8E-9 T 22-04-2016 PP4_RS07465 5bee516c347b038fada145cff41b61e9 674 PANTHER PTHR30460:SF0 252 655 2.7E-97 T 22-04-2016 PP4_RS07465 5bee516c347b038fada145cff41b61e9 674 SUPERFAMILY SSF82689 567 656 7.72E-6 T 22-04-2016 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 PP4_RS06600 46d7f98b9a5c7cce61d56c0a13dd28c0 308 PANTHER PTHR22911:SF63 11 304 5.3E-112 T 22-04-2016 PP4_RS06600 46d7f98b9a5c7cce61d56c0a13dd28c0 308 Pfam PF00892 EamA-like transporter family 158 294 1.8E-18 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS06600 46d7f98b9a5c7cce61d56c0a13dd28c0 308 Pfam PF00892 EamA-like transporter family 15 142 1.3E-13 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS06600 46d7f98b9a5c7cce61d56c0a13dd28c0 308 SUPERFAMILY SSF103481 196 296 3.14E-13 T 22-04-2016 PP4_RS06600 46d7f98b9a5c7cce61d56c0a13dd28c0 308 SUPERFAMILY SSF103481 46 146 1.28E-11 T 22-04-2016 PP4_RS06600 46d7f98b9a5c7cce61d56c0a13dd28c0 308 PANTHER PTHR22911 11 304 5.3E-112 T 22-04-2016 PP4_RS06075 b2ee7b72db59311351d8d11f02c5dfd8 176 Pfam PF04542 Sigma-70 region 2 14 80 4.6E-18 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS06075 b2ee7b72db59311351d8d11f02c5dfd8 176 Gene3D G3DSA:1.10.1740.10 10 82 2.8E-18 T 22-04-2016 PP4_RS06075 b2ee7b72db59311351d8d11f02c5dfd8 176 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 11 159 1.1E-24 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS06075 b2ee7b72db59311351d8d11f02c5dfd8 176 Gene3D G3DSA:1.10.10.10 108 163 1.3E-11 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS06075 b2ee7b72db59311351d8d11f02c5dfd8 176 Pfam PF08281 Sigma-70, region 4 112 163 4.2E-13 T 22-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS06075 b2ee7b72db59311351d8d11f02c5dfd8 176 PANTHER PTHR30173 11 176 1.4E-40 T 22-04-2016 PP4_RS06075 b2ee7b72db59311351d8d11f02c5dfd8 176 SUPERFAMILY SSF88946 11 100 1.57E-20 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS06075 b2ee7b72db59311351d8d11f02c5dfd8 176 PANTHER PTHR30173:SF9 11 176 1.4E-40 T 22-04-2016 PP4_RS06075 b2ee7b72db59311351d8d11f02c5dfd8 176 SUPERFAMILY SSF88659 105 163 3.05E-11 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS21025 5cdd739902aede4e1c23e8e1534c58da 251 ProSitePatterns PS01066 Undecaprenyl pyrophosphate synthase family signature. 185 202 - T 22-04-2016 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site GO:0016765 PP4_RS21025 5cdd739902aede4e1c23e8e1534c58da 251 PANTHER PTHR10291 12 251 7.8E-120 T 22-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 PP4_RS21025 5cdd739902aede4e1c23e8e1534c58da 251 Pfam PF01255 Putative undecaprenyl diphosphate synthase 19 239 1.8E-78 T 22-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 PP4_RS21025 5cdd739902aede4e1c23e8e1534c58da 251 SUPERFAMILY SSF64005 10 235 1.83E-85 T 22-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 PP4_RS21025 5cdd739902aede4e1c23e8e1534c58da 251 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 12 239 7.7E-91 T 22-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 PP4_RS21025 5cdd739902aede4e1c23e8e1534c58da 251 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 12 240 39.127 T 22-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 PP4_RS21025 5cdd739902aede4e1c23e8e1534c58da 251 Gene3D G3DSA:3.40.1180.10 8 246 3.1E-100 T 22-04-2016 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 PP4_RS15450 6e8a1b35f79d7e26138dd9f80db1f91d 265 Gene3D G3DSA:3.40.50.720 8 198 3.7E-56 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS15450 6e8a1b35f79d7e26138dd9f80db1f91d 265 PANTHER PTHR24322:SF468 155 186 6.5E-45 T 22-04-2016 PP4_RS15450 6e8a1b35f79d7e26138dd9f80db1f91d 265 PANTHER PTHR24322:SF468 11 139 6.5E-45 T 22-04-2016 PP4_RS15450 6e8a1b35f79d7e26138dd9f80db1f91d 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 155 174 7.0E-25 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15450 6e8a1b35f79d7e26138dd9f80db1f91d 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 129 145 7.0E-25 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15450 6e8a1b35f79d7e26138dd9f80db1f91d 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 82 93 7.0E-25 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15450 6e8a1b35f79d7e26138dd9f80db1f91d 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 176 193 7.0E-25 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15450 6e8a1b35f79d7e26138dd9f80db1f91d 265 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 8 25 7.0E-25 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15450 6e8a1b35f79d7e26138dd9f80db1f91d 265 PANTHER PTHR24322 155 186 6.5E-45 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15450 6e8a1b35f79d7e26138dd9f80db1f91d 265 PANTHER PTHR24322 11 139 6.5E-45 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15450 6e8a1b35f79d7e26138dd9f80db1f91d 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 174 9.8E-12 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15450 6e8a1b35f79d7e26138dd9f80db1f91d 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 135 143 9.8E-12 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15450 6e8a1b35f79d7e26138dd9f80db1f91d 265 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 9.8E-12 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15450 6e8a1b35f79d7e26138dd9f80db1f91d 265 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 7 183 0.0035 T 22-04-2016 PP4_RS15450 6e8a1b35f79d7e26138dd9f80db1f91d 265 Pfam PF00106 short chain dehydrogenase 8 194 1.6E-42 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS15450 6e8a1b35f79d7e26138dd9f80db1f91d 265 SUPERFAMILY SSF51735 7 203 9.14E-55 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS15450 6e8a1b35f79d7e26138dd9f80db1f91d 265 PIRSF PIRSF000126 1 265 3.1E-73 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS07450 df355be3c916c6882f6fe1ff7138e9b5 145 Gene3D G3DSA:1.10.10.10 3 53 2.1E-17 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS07450 df355be3c916c6882f6fe1ff7138e9b5 145 PANTHER PTHR30154 3 144 2.7E-85 T 22-04-2016 PP4_RS07450 df355be3c916c6882f6fe1ff7138e9b5 145 SMART SM00344 2 108 3.0E-27 T 22-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 PP4_RS07450 df355be3c916c6882f6fe1ff7138e9b5 145 PANTHER PTHR30154:SF14 3 144 2.7E-85 T 22-04-2016 PP4_RS07450 df355be3c916c6882f6fe1ff7138e9b5 145 SUPERFAMILY SSF54909 64 137 1.93E-14 T 22-04-2016 IPR011008 Dimeric alpha-beta barrel PP4_RS07450 df355be3c916c6882f6fe1ff7138e9b5 145 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 29 48 4.9E-11 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS07450 df355be3c916c6882f6fe1ff7138e9b5 145 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 2 18 4.9E-11 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS07450 df355be3c916c6882f6fe1ff7138e9b5 145 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 18 29 4.9E-11 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS07450 df355be3c916c6882f6fe1ff7138e9b5 145 Pfam PF01037 Lrp/AsnC ligand binding domain 68 133 2.0E-14 T 22-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PP4_RS07450 df355be3c916c6882f6fe1ff7138e9b5 145 Gene3D G3DSA:3.30.70.920 55 126 2.6E-17 T 22-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PP4_RS07450 df355be3c916c6882f6fe1ff7138e9b5 145 Pfam PF13404 AsnC-type helix-turn-helix domain 3 43 4.3E-12 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS07450 df355be3c916c6882f6fe1ff7138e9b5 145 SUPERFAMILY SSF46785 3 62 1.37E-14 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS20250 061781956749d331cb861f30c89aa030 654 Hamap MF_01102 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC [mnmC]. 6 648 26.043 T 22-04-2016 IPR023032 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC GO:0004808|GO:0008033|GO:0008168|GO:0016645|GO:0055114 PP4_RS20250 061781956749d331cb861f30c89aa030 654 PANTHER PTHR13847 594 653 1.9E-93 T 22-04-2016 PP4_RS20250 061781956749d331cb861f30c89aa030 654 PANTHER PTHR13847 217 574 1.9E-93 T 22-04-2016 PP4_RS20250 061781956749d331cb861f30c89aa030 654 Pfam PF01266 FAD dependent oxidoreductase 260 624 2.9E-44 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PP4_RS20250 061781956749d331cb861f30c89aa030 654 TIGRFAM TIGR03197 MnmC_Cterm: tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 259 653 3.8E-136 T 22-04-2016 IPR017610 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal GO:0008168|GO:0016645|GO:0055114 PP4_RS20250 061781956749d331cb861f30c89aa030 654 SUPERFAMILY SSF53335 9 111 7.1E-7 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS20250 061781956749d331cb861f30c89aa030 654 SUPERFAMILY SSF53335 140 207 7.1E-7 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS20250 061781956749d331cb861f30c89aa030 654 PANTHER PTHR13847:SF206 594 653 1.9E-93 T 22-04-2016 PP4_RS20250 061781956749d331cb861f30c89aa030 654 PANTHER PTHR13847:SF206 217 574 1.9E-93 T 22-04-2016 PP4_RS20250 061781956749d331cb861f30c89aa030 654 Gene3D G3DSA:3.50.50.60 259 332 3.8E-31 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS20250 061781956749d331cb861f30c89aa030 654 Gene3D G3DSA:3.50.50.60 560 650 3.8E-31 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS20250 061781956749d331cb861f30c89aa030 654 Gene3D G3DSA:3.50.50.60 385 465 3.8E-31 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS20250 061781956749d331cb861f30c89aa030 654 Pfam PF05430 S-adenosyl-L-methionine-dependent methyltransferase 113 234 1.3E-40 T 22-04-2016 IPR008471 MnmC-like methyltransferase GO:0016645|GO:0055114 PP4_RS20250 061781956749d331cb861f30c89aa030 654 Gene3D G3DSA:3.40.50.150 9 235 1.4E-83 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS20250 061781956749d331cb861f30c89aa030 654 SUPERFAMILY SSF51905 560 652 1.26E-33 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS20250 061781956749d331cb861f30c89aa030 654 SUPERFAMILY SSF51905 259 466 1.26E-33 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS13640 e8e04e3a1d7e43a74a18360a69c78a2a 244 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 6 184 0.004 T 22-04-2016 PP4_RS13640 e8e04e3a1d7e43a74a18360a69c78a2a 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 78 89 2.3E-15 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13640 e8e04e3a1d7e43a74a18360a69c78a2a 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 132 140 2.3E-15 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13640 e8e04e3a1d7e43a74a18360a69c78a2a 244 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 170 2.3E-15 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13640 e8e04e3a1d7e43a74a18360a69c78a2a 244 SUPERFAMILY SSF51735 5 241 1.93E-86 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS13640 e8e04e3a1d7e43a74a18360a69c78a2a 244 Gene3D G3DSA:3.40.50.720 1 242 8.4E-89 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS13640 e8e04e3a1d7e43a74a18360a69c78a2a 244 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 12 241 1.7E-70 T 22-04-2016 PP4_RS13640 e8e04e3a1d7e43a74a18360a69c78a2a 244 PANTHER PTHR24322 10 183 4.8E-56 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13640 e8e04e3a1d7e43a74a18360a69c78a2a 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 126 142 2.5E-45 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13640 e8e04e3a1d7e43a74a18360a69c78a2a 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 151 170 2.5E-45 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13640 e8e04e3a1d7e43a74a18360a69c78a2a 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 172 189 2.5E-45 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13640 e8e04e3a1d7e43a74a18360a69c78a2a 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 205 225 2.5E-45 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13640 e8e04e3a1d7e43a74a18360a69c78a2a 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 7 24 2.5E-45 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13640 e8e04e3a1d7e43a74a18360a69c78a2a 244 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 78 89 2.5E-45 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS27410 df524e3addb578b264040adaae99e82c 290 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 34 206 3.2E-61 T 22-04-2016 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 PP4_RS27410 df524e3addb578b264040adaae99e82c 290 SMART SM00470 37 127 2.3E-38 T 22-04-2016 IPR003115 ParB/Sulfiredoxin PP4_RS27410 df524e3addb578b264040adaae99e82c 290 Gene3D G3DSA:3.90.1530.10 32 129 7.6E-42 T 22-04-2016 PP4_RS27410 df524e3addb578b264040adaae99e82c 290 Gene3D G3DSA:1.10.260.40 130 178 4.1E-5 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS27410 df524e3addb578b264040adaae99e82c 290 Pfam PF02195 ParB-like nuclease domain 39 127 1.3E-28 T 22-04-2016 IPR003115 ParB/Sulfiredoxin PP4_RS27410 df524e3addb578b264040adaae99e82c 290 PANTHER PTHR33375 1 290 2.8E-101 T 22-04-2016 PP4_RS27410 df524e3addb578b264040adaae99e82c 290 SUPERFAMILY SSF110849 37 182 3.09E-35 T 22-04-2016 IPR003115 ParB/Sulfiredoxin PP4_RS11830 ef06379c6e96a52ecbcb36dab9e366af 1253 TIGRFAM TIGR02257 cobalto_cobN: cobaltochelatase, CobN subunit 2 1248 0.0 T 22-04-2016 IPR011953 Cobaltochelatase, CobN subunit GO:0009236|GO:0051116 PP4_RS11830 ef06379c6e96a52ecbcb36dab9e366af 1253 PANTHER PTHR23304:SF96 26 1252 0.0 T 22-04-2016 PP4_RS11830 ef06379c6e96a52ecbcb36dab9e366af 1253 Pfam PF02514 CobN/Magnesium Chelatase 138 1236 0.0 T 22-04-2016 IPR003672 CobN/magnesium chelatase GO:0009058 PP4_RS11830 ef06379c6e96a52ecbcb36dab9e366af 1253 PANTHER PTHR23304 26 1252 0.0 T 22-04-2016 PP4_RS17040 7f9571adfa390e6d48c611260f44a1c0 262 Pfam PF00005 ABC transporter 27 176 5.2E-34 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS17040 7f9571adfa390e6d48c611260f44a1c0 262 PANTHER PTHR24220 13 250 5.3E-77 T 22-04-2016 PP4_RS17040 7f9571adfa390e6d48c611260f44a1c0 262 Gene3D G3DSA:3.40.50.300 12 235 1.7E-58 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS17040 7f9571adfa390e6d48c611260f44a1c0 262 SMART SM00382 36 228 3.0E-13 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS17040 7f9571adfa390e6d48c611260f44a1c0 262 PANTHER PTHR24220:SF309 13 250 5.3E-77 T 22-04-2016 PP4_RS17040 7f9571adfa390e6d48c611260f44a1c0 262 SUPERFAMILY SSF52540 12 239 6.37E-58 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS20240 6f505cc3f25110e63cb5bb5864c2ff40 320 Pfam PF00892 EamA-like transporter family 10 143 2.8E-20 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS20240 6f505cc3f25110e63cb5bb5864c2ff40 320 Pfam PF00892 EamA-like transporter family 161 299 7.5E-11 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS20240 6f505cc3f25110e63cb5bb5864c2ff40 320 SUPERFAMILY SSF103481 44 144 5.23E-12 T 22-04-2016 PP4_RS20240 6f505cc3f25110e63cb5bb5864c2ff40 320 PANTHER PTHR22911 11 319 4.6E-91 T 22-04-2016 PP4_RS20240 6f505cc3f25110e63cb5bb5864c2ff40 320 PANTHER PTHR22911:SF55 11 319 4.6E-91 T 22-04-2016 PP4_RS15470 29b1a55267d5135a60bbb56974d0ad22 328 Pfam PF08908 Domain of unknown function (DUF1852) 3 324 9.1E-186 T 22-04-2016 IPR015004 Protein of unknown function DUF1852 PP4_RS15470 29b1a55267d5135a60bbb56974d0ad22 328 PIRSF PIRSF034367 1 328 4.5E-195 T 22-04-2016 IPR015004 Protein of unknown function DUF1852 PP4_RS12265 761f0a212ef7b7d76a591b0eb7e25e53 207 PANTHER PTHR30086 1 207 1.2E-71 T 22-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PP4_RS12265 761f0a212ef7b7d76a591b0eb7e25e53 207 PANTHER PTHR30086:SF4 1 207 1.2E-71 T 22-04-2016 PP4_RS12265 761f0a212ef7b7d76a591b0eb7e25e53 207 PIRSF PIRSF006324 1 207 2.0E-47 T 22-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PP4_RS12265 761f0a212ef7b7d76a591b0eb7e25e53 207 Pfam PF01810 LysE type translocator 15 203 3.9E-23 T 22-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PP4_RS14110 ea72f269d11f579f5903a748a5214b64 309 Pfam PF09084 NMT1/THI5 like 61 181 7.2E-10 T 22-04-2016 IPR015168 SsuA/THI5-like PP4_RS14110 ea72f269d11f579f5903a748a5214b64 309 Gene3D G3DSA:3.40.190.10 107 224 1.2E-26 T 22-04-2016 PP4_RS14110 ea72f269d11f579f5903a748a5214b64 309 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 26 307 7.6E-86 T 22-04-2016 IPR010067 Aliphatic sulfonates-binding protein GO:0006790|GO:0006810|GO:0016020 PP4_RS14110 ea72f269d11f579f5903a748a5214b64 309 PANTHER PTHR30024:SF11 1 308 9.2E-126 T 22-04-2016 PP4_RS14110 ea72f269d11f579f5903a748a5214b64 309 PANTHER PTHR30024 1 308 9.2E-126 T 22-04-2016 PP4_RS14110 ea72f269d11f579f5903a748a5214b64 309 SUPERFAMILY SSF53850 25 303 3.86E-46 T 22-04-2016 PP4_RS14110 ea72f269d11f579f5903a748a5214b64 309 SMART SM00062 25 246 5.9E-16 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS11275 18ccff4207f4818c65042ce081147c0c 306 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 11 68 2.9E-14 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS11275 18ccff4207f4818c65042ce081147c0c 306 PANTHER PTHR30537 1 305 3.3E-105 T 22-04-2016 PP4_RS11275 18ccff4207f4818c65042ce081147c0c 306 PANTHER PTHR30537:SF5 1 305 3.3E-105 T 22-04-2016 PP4_RS11275 18ccff4207f4818c65042ce081147c0c 306 SUPERFAMILY SSF46785 10 117 3.11E-17 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS11275 18ccff4207f4818c65042ce081147c0c 306 SUPERFAMILY SSF53850 95 300 3.98E-45 T 22-04-2016 PP4_RS11275 18ccff4207f4818c65042ce081147c0c 306 Gene3D G3DSA:3.40.190.10 97 182 6.9E-25 T 22-04-2016 PP4_RS11275 18ccff4207f4818c65042ce081147c0c 306 Pfam PF03466 LysR substrate binding domain 94 298 4.9E-45 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS11275 18ccff4207f4818c65042ce081147c0c 306 Gene3D G3DSA:3.40.190.10 183 264 4.9E-8 T 22-04-2016 PP4_RS11275 18ccff4207f4818c65042ce081147c0c 306 Gene3D G3DSA:1.10.10.10 10 90 9.3E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS22290 857a2684a9e2ed09e679c2794098b81f 66 PIRSF PIRSF039003 3 66 4.6E-32 T 22-04-2016 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 PP4_RS22290 857a2684a9e2ed09e679c2794098b81f 66 Gene3D G3DSA:1.10.10.600 1 66 1.2E-30 T 22-04-2016 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 PP4_RS22290 857a2684a9e2ed09e679c2794098b81f 66 Pfam PF04384 Iron-sulphur cluster assembly 3 65 4.0E-29 T 22-04-2016 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 PP4_RS22290 857a2684a9e2ed09e679c2794098b81f 66 TIGRFAM TIGR03412 iscX_yfhJ: FeS assembly protein IscX 4 66 1.1E-32 T 22-04-2016 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 PP4_RS22290 857a2684a9e2ed09e679c2794098b81f 66 SUPERFAMILY SSF140319 2 64 9.94E-25 T 22-04-2016 IPR007479 ISC system FeS cluster assembly, IscX GO:0016226 PP4_RS22290 857a2684a9e2ed09e679c2794098b81f 66 PANTHER PTHR37532 1 66 1.1E-28 T 22-04-2016 PP4_RS12925 0a38fe0a46766550daa8f3c31135726c 365 Pfam PF05651 Putative sugar diacid recognition 4 134 1.8E-47 T 22-04-2016 IPR008599 Putative sugar diacid recognition PP4_RS12925 0a38fe0a46766550daa8f3c31135726c 365 Gene3D G3DSA:1.10.10.60 308 338 1.8E-4 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS12925 0a38fe0a46766550daa8f3c31135726c 365 PANTHER PTHR33744 1 362 1.3E-100 T 22-04-2016 PP4_RS12925 0a38fe0a46766550daa8f3c31135726c 365 PANTHER PTHR33744:SF1 1 362 1.3E-100 T 22-04-2016 PP4_RS12925 0a38fe0a46766550daa8f3c31135726c 365 Pfam PF13556 PucR C-terminal helix-turn-helix domain 303 360 8.0E-19 T 22-04-2016 IPR025736 PucR C-terminal helix-turn-helix domain PP4_RS00840 25d5b7b437dcf3a458246e73733ab907 458 PANTHER PTHR30386:SF4 168 458 7.1E-128 T 22-04-2016 PP4_RS00840 25d5b7b437dcf3a458246e73733ab907 458 PANTHER PTHR30386:SF4 29 137 7.1E-128 T 22-04-2016 PP4_RS00840 25d5b7b437dcf3a458246e73733ab907 458 ProSitePatterns PS00543 HlyD family secretion proteins signature. 422 444 - T 22-04-2016 IPR006144 Secretion protein HlyD, conserved site GO:0008565|GO:0009306|GO:0016020 PP4_RS00840 25d5b7b437dcf3a458246e73733ab907 458 PANTHER PTHR30386 168 458 7.1E-128 T 22-04-2016 PP4_RS00840 25d5b7b437dcf3a458246e73733ab907 458 PANTHER PTHR30386 29 137 7.1E-128 T 22-04-2016 PP4_RS00840 25d5b7b437dcf3a458246e73733ab907 458 Pfam PF13533 Biotin-lipoyl like 84 129 3.4E-6 T 22-04-2016 PP4_RS00840 25d5b7b437dcf3a458246e73733ab907 458 Pfam PF13437 HlyD family secretion protein 309 419 1.3E-16 T 22-04-2016 PP4_RS00840 25d5b7b437dcf3a458246e73733ab907 458 Gene3D G3DSA:2.40.50.100 306 340 5.0E-14 T 22-04-2016 PP4_RS00840 25d5b7b437dcf3a458246e73733ab907 458 Gene3D G3DSA:2.40.50.100 85 116 5.0E-14 T 22-04-2016 PP4_RS00840 25d5b7b437dcf3a458246e73733ab907 458 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 354 378 2.7E-45 T 22-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 PP4_RS00840 25d5b7b437dcf3a458246e73733ab907 458 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 321 342 2.7E-45 T 22-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 PP4_RS00840 25d5b7b437dcf3a458246e73733ab907 458 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 422 437 2.7E-45 T 22-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 PP4_RS00840 25d5b7b437dcf3a458246e73733ab907 458 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 94 114 2.7E-45 T 22-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 PP4_RS00840 25d5b7b437dcf3a458246e73733ab907 458 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 437 457 2.7E-45 T 22-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 PP4_RS00840 25d5b7b437dcf3a458246e73733ab907 458 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 52 75 2.7E-45 T 22-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 PP4_RS00840 25d5b7b437dcf3a458246e73733ab907 458 PRINTS PR01490 Gram-negative bacterial RTX secretion protein D signature 378 401 2.7E-45 T 22-04-2016 IPR003997 RTX secretion protein D, Gram-negative bacteria GO:0009306|GO:0016020 PP4_RS00840 25d5b7b437dcf3a458246e73733ab907 458 TIGRFAM TIGR01843 type_I_hlyD: type I secretion membrane fusion protein, HlyD family 42 458 1.8E-128 T 22-04-2016 IPR010129 Type I secretion membrane fusion protein, HlyD family GO:0015031|GO:0016021 PP4_RS23170 528e1605adf94cb560ea5d7468e8fd37 446 Gene3D G3DSA:1.10.285.10 371 446 3.5E-28 T 22-04-2016 PP4_RS23170 528e1605adf94cb560ea5d7468e8fd37 446 Gene3D G3DSA:1.10.285.10 4 65 1.2E-26 T 22-04-2016 PP4_RS23170 528e1605adf94cb560ea5d7468e8fd37 446 Gene3D G3DSA:3.40.192.10 66 187 2.0E-61 T 22-04-2016 PP4_RS23170 528e1605adf94cb560ea5d7468e8fd37 446 PIRSF PIRSF000185 20 446 2.8E-117 T 22-04-2016 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 PP4_RS23170 528e1605adf94cb560ea5d7468e8fd37 446 PANTHER PTHR11606:SF4 3 446 3.3E-247 T 22-04-2016 PP4_RS23170 528e1605adf94cb560ea5d7468e8fd37 446 SMART SM00839 202 444 1.3E-85 T 22-04-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 PP4_RS23170 528e1605adf94cb560ea5d7468e8fd37 446 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 233 253 7.0E-32 T 22-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 PP4_RS23170 528e1605adf94cb560ea5d7468e8fd37 446 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 112 126 7.0E-32 T 22-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 PP4_RS23170 528e1605adf94cb560ea5d7468e8fd37 446 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 191 213 7.0E-32 T 22-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 PP4_RS23170 528e1605adf94cb560ea5d7468e8fd37 446 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 370 381 7.0E-32 T 22-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 PP4_RS23170 528e1605adf94cb560ea5d7468e8fd37 446 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 200 444 1.3E-85 T 22-04-2016 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 PP4_RS23170 528e1605adf94cb560ea5d7468e8fd37 446 SUPERFAMILY SSF51735 200 445 3.28E-76 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS23170 528e1605adf94cb560ea5d7468e8fd37 446 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 55 183 5.6E-50 T 22-04-2016 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 PP4_RS23170 528e1605adf94cb560ea5d7468e8fd37 446 SUPERFAMILY SSF53223 5 194 3.1E-74 T 22-04-2016 PP4_RS23170 528e1605adf94cb560ea5d7468e8fd37 446 PANTHER PTHR11606 3 446 3.3E-247 T 22-04-2016 PP4_RS23170 528e1605adf94cb560ea5d7468e8fd37 446 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 120 133 - T 22-04-2016 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 PP4_RS23170 528e1605adf94cb560ea5d7468e8fd37 446 Gene3D G3DSA:3.40.50.720 207 370 5.0E-61 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS01440 34bc81809e57429b82b61c24f1998d50 272 Gene3D G3DSA:3.40.190.80 158 259 1.1E-39 T 22-04-2016 PP4_RS01440 34bc81809e57429b82b61c24f1998d50 272 PANTHER PTHR20854:SF5 1 252 1.1E-73 T 22-04-2016 PP4_RS01440 34bc81809e57429b82b61c24f1998d50 272 PRINTS PR00377 Inositol monophosphatase superfamily signature 84 100 3.5E-9 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 PP4_RS01440 34bc81809e57429b82b61c24f1998d50 272 PRINTS PR00377 Inositol monophosphatase superfamily signature 215 239 3.5E-9 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 PP4_RS01440 34bc81809e57429b82b61c24f1998d50 272 PRINTS PR00377 Inositol monophosphatase superfamily signature 38 58 3.5E-9 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 PP4_RS01440 34bc81809e57429b82b61c24f1998d50 272 Gene3D G3DSA:3.30.540.10 6 157 7.5E-44 T 22-04-2016 PP4_RS01440 34bc81809e57429b82b61c24f1998d50 272 PANTHER PTHR20854 1 252 1.1E-73 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 PP4_RS01440 34bc81809e57429b82b61c24f1998d50 272 SUPERFAMILY SSF56655 6 272 1.57E-76 T 22-04-2016 PP4_RS01440 34bc81809e57429b82b61c24f1998d50 272 Pfam PF00459 Inositol monophosphatase family 11 252 1.0E-47 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 PP4_RS01440 34bc81809e57429b82b61c24f1998d50 272 TIGRFAM TIGR01331 bisphos_cysQ: 3'(2'),5'-bisphosphate nucleotidase 7 257 1.5E-89 T 22-04-2016 IPR006240 3(2),5 -bisphosphate nucleotidase, bacterial GO:0000287|GO:0016020 KEGG: 00920+3.1.3.7 PP4_RS02150 029ee8016e7f951c69d603371e92a822 189 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 4 187 1.3E-53 T 22-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 PP4_RS02150 029ee8016e7f951c69d603371e92a822 189 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 4 189 18.124 T 22-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 PP4_RS02150 029ee8016e7f951c69d603371e92a822 189 PANTHER PTHR30309:SF0 1 189 1.4E-68 T 22-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 PP4_RS02150 029ee8016e7f951c69d603371e92a822 189 Pfam PF02660 Glycerol-3-phosphate acyltransferase 8 181 1.6E-50 T 22-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 PP4_RS02150 029ee8016e7f951c69d603371e92a822 189 SMART SM01207 7 182 5.6E-76 T 22-04-2016 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 UniPathway: UPA00085 PP4_RS02150 029ee8016e7f951c69d603371e92a822 189 PANTHER PTHR30309 1 189 1.4E-68 T 22-04-2016 PP4_RS15055 feb2b7746c5e0e5aadcf509396e26632 451 SUPERFAMILY SSF53383 105 440 1.61E-40 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS15055 feb2b7746c5e0e5aadcf509396e26632 451 Gene3D G3DSA:3.40.640.10 120 313 7.4E-20 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS15055 feb2b7746c5e0e5aadcf509396e26632 451 PANTHER PTHR11751:SF294 122 440 7.6E-17 T 22-04-2016 PP4_RS15055 feb2b7746c5e0e5aadcf509396e26632 451 Gene3D G3DSA:1.10.10.10 10 72 1.5E-12 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS15055 feb2b7746c5e0e5aadcf509396e26632 451 PANTHER PTHR11751 122 440 7.6E-17 T 22-04-2016 PP4_RS15055 feb2b7746c5e0e5aadcf509396e26632 451 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 72 1.0E-7 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS15055 feb2b7746c5e0e5aadcf509396e26632 451 SUPERFAMILY SSF46785 5 77 5.86E-11 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS15055 feb2b7746c5e0e5aadcf509396e26632 451 SMART SM00345 14 73 1.5E-5 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS15055 feb2b7746c5e0e5aadcf509396e26632 451 Pfam PF00155 Aminotransferase class I and II 121 416 6.3E-10 T 22-04-2016 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 PP4_RS15055 feb2b7746c5e0e5aadcf509396e26632 451 Gene3D G3DSA:3.90.1150.10 337 440 1.5E-9 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS22865 0550e75b1a60e2bf3d263b76a06d50b9 172 Gene3D G3DSA:2.40.160.20 25 170 2.4E-52 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 PP4_RS22865 0550e75b1a60e2bf3d263b76a06d50b9 172 Pfam PF09411 Lipid A 3-O-deacylase (PagL) 41 170 1.1E-26 T 22-04-2016 IPR018550 Lipid A 3-O-deacylase-related PP4_RS22865 0550e75b1a60e2bf3d263b76a06d50b9 172 SUPERFAMILY SSF56925 34 154 7.32E-6 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 PP4_RS22865 0550e75b1a60e2bf3d263b76a06d50b9 172 PIRSF PIRSF029681 1 171 2.9E-47 T 22-04-2016 IPR018550 Lipid A 3-O-deacylase-related PP4_RS06955 9951294294a02a8360cb604ef0fb3066 423 Pfam PF00364 Biotin-requiring enzyme 5 77 4.2E-17 T 22-04-2016 IPR000089 Biotin/lipoyl attachment PP4_RS06955 9951294294a02a8360cb604ef0fb3066 423 Gene3D G3DSA:2.40.50.100 3 85 1.8E-22 T 22-04-2016 PP4_RS06955 9951294294a02a8360cb604ef0fb3066 423 SUPERFAMILY SSF47005 129 175 5.62E-11 T 22-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 PP4_RS06955 9951294294a02a8360cb604ef0fb3066 423 Gene3D G3DSA:3.30.559.10 187 421 8.9E-79 T 22-04-2016 IPR023213 Chloramphenicol acetyltransferase-like domain PP4_RS06955 9951294294a02a8360cb604ef0fb3066 423 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 193 421 4.7E-77 T 22-04-2016 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0008152|GO:0016746 PP4_RS06955 9951294294a02a8360cb604ef0fb3066 423 PANTHER PTHR23151 1 423 1.0E-202 T 22-04-2016 PP4_RS06955 9951294294a02a8360cb604ef0fb3066 423 PANTHER PTHR23151:SF62 1 423 1.0E-202 T 22-04-2016 PP4_RS06955 9951294294a02a8360cb604ef0fb3066 423 Gene3D G3DSA:4.10.320.10 128 176 1.8E-16 T 22-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 PP4_RS06955 9951294294a02a8360cb604ef0fb3066 423 SUPERFAMILY SSF52777 186 421 1.47E-77 T 22-04-2016 PP4_RS06955 9951294294a02a8360cb604ef0fb3066 423 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 28 57 - T 22-04-2016 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site PP4_RS06955 9951294294a02a8360cb604ef0fb3066 423 SUPERFAMILY SSF51230 3 84 1.7E-23 T 22-04-2016 IPR011053 Single hybrid motif PP4_RS06955 9951294294a02a8360cb604ef0fb3066 423 Pfam PF02817 e3 binding domain 136 170 1.9E-10 T 22-04-2016 IPR004167 E3-binding domain GO:0008152|GO:0016746 PP4_RS00760 ecc4df7e3b6957f7e3ed468f06c4a83b 406 PANTHER PTHR24023 58 393 1.3E-37 T 22-04-2016 PP4_RS00760 ecc4df7e3b6957f7e3ed468f06c4a83b 406 SUPERFAMILY SSF89796 1 406 2.22E-146 T 22-04-2016 IPR023606 CoA-transferase family III domain PP4_RS00760 ecc4df7e3b6957f7e3ed468f06c4a83b 406 Gene3D G3DSA:3.30.1540.10 232 314 4.0E-37 T 22-04-2016 PP4_RS00760 ecc4df7e3b6957f7e3ed468f06c4a83b 406 Gene3D G3DSA:3.40.50.10540 2 226 8.6E-125 T 22-04-2016 IPR023606 CoA-transferase family III domain PP4_RS00760 ecc4df7e3b6957f7e3ed468f06c4a83b 406 Gene3D G3DSA:3.40.50.10540 315 406 8.6E-125 T 22-04-2016 IPR023606 CoA-transferase family III domain PP4_RS00760 ecc4df7e3b6957f7e3ed468f06c4a83b 406 Pfam PF02515 CoA-transferase family III 4 382 1.3E-134 T 22-04-2016 IPR003673 CoA-transferase family III GO:0003824 PP4_RS00760 ecc4df7e3b6957f7e3ed468f06c4a83b 406 PANTHER PTHR24023:SF593 58 393 1.3E-37 T 22-04-2016 PP4_RS22145 2792a9a04e426354b5fba9d611d2af9f 359 PANTHER PTHR30222:SF11 1 358 9.5E-191 T 22-04-2016 PP4_RS22145 2792a9a04e426354b5fba9d611d2af9f 359 Gene3D G3DSA:3.40.190.10 140 307 6.1E-71 T 22-04-2016 PP4_RS22145 2792a9a04e426354b5fba9d611d2af9f 359 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 41 62 2.0E-56 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS22145 2792a9a04e426354b5fba9d611d2af9f 359 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 171 190 2.0E-56 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS22145 2792a9a04e426354b5fba9d611d2af9f 359 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 208 227 2.0E-56 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS22145 2792a9a04e426354b5fba9d611d2af9f 359 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 303 329 2.0E-56 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS22145 2792a9a04e426354b5fba9d611d2af9f 359 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 25 41 2.0E-56 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS22145 2792a9a04e426354b5fba9d611d2af9f 359 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 117 133 2.0E-56 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS22145 2792a9a04e426354b5fba9d611d2af9f 359 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 68 82 2.0E-56 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS22145 2792a9a04e426354b5fba9d611d2af9f 359 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 258 277 2.0E-56 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS22145 2792a9a04e426354b5fba9d611d2af9f 359 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 84 97 2.0E-56 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS22145 2792a9a04e426354b5fba9d611d2af9f 359 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 148 162 2.0E-56 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS22145 2792a9a04e426354b5fba9d611d2af9f 359 PIRSF PIRSF019574 3 359 4.0E-126 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS22145 2792a9a04e426354b5fba9d611d2af9f 359 Pfam PF13416 Bacterial extracellular solute-binding protein 37 311 5.7E-29 T 22-04-2016 PP4_RS22145 2792a9a04e426354b5fba9d611d2af9f 359 SUPERFAMILY SSF53850 20 358 6.21E-94 T 22-04-2016 PP4_RS22145 2792a9a04e426354b5fba9d611d2af9f 359 PANTHER PTHR30222 1 358 9.5E-191 T 22-04-2016 PP4_RS22145 2792a9a04e426354b5fba9d611d2af9f 359 Gene3D G3DSA:3.40.190.10 39 139 1.6E-11 T 22-04-2016 PP4_RS25515 e35aa691819fb3fa0cb2bc474a5f6225 189 SUPERFAMILY SSF143456 8 189 1.13E-59 T 22-04-2016 PP4_RS25515 e35aa691819fb3fa0cb2bc474a5f6225 189 PANTHER PTHR30327 4 189 1.0E-60 T 22-04-2016 PP4_RS25515 e35aa691819fb3fa0cb2bc474a5f6225 189 PANTHER PTHR30327:SF1 4 189 1.0E-60 T 22-04-2016 PP4_RS25515 e35aa691819fb3fa0cb2bc474a5f6225 189 Gene3D G3DSA:3.40.1740.10 133 179 1.4E-30 T 22-04-2016 PP4_RS25515 e35aa691819fb3fa0cb2bc474a5f6225 189 Gene3D G3DSA:3.40.1740.10 6 46 1.4E-30 T 22-04-2016 PP4_RS25515 e35aa691819fb3fa0cb2bc474a5f6225 189 Pfam PF02622 Uncharacterized ACR, COG1678 18 176 7.1E-45 T 22-04-2016 IPR003774 Protein of unknown function UPF0301 PP4_RS25515 e35aa691819fb3fa0cb2bc474a5f6225 189 Hamap MF_00758 UPF0301 protein YqgE [yqgE]. 7 189 36.366 T 22-04-2016 IPR003774 Protein of unknown function UPF0301 PP4_RS25515 e35aa691819fb3fa0cb2bc474a5f6225 189 Gene3D G3DSA:3.30.70.1300 47 132 1.5E-24 T 22-04-2016 PP4_RS02510 ed6027293765e8d4b3c8a030af68f589 200 SUPERFAMILY SSF52166 4 199 3.79E-70 T 22-04-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 PP4_RS02510 ed6027293765e8d4b3c8a030af68f589 200 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 11 197 1.8E-72 T 22-04-2016 IPR013005 50S ribosomal protein uL4 PP4_RS02510 ed6027293765e8d4b3c8a030af68f589 200 Pfam PF00573 Ribosomal protein L4/L1 family 11 197 1.6E-62 T 22-04-2016 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 PP4_RS02510 ed6027293765e8d4b3c8a030af68f589 200 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 3 200 33.718 T 22-04-2016 IPR013005 50S ribosomal protein uL4 PP4_RS02510 ed6027293765e8d4b3c8a030af68f589 200 PANTHER PTHR10746 10 200 8.7E-83 T 22-04-2016 IPR013005 50S ribosomal protein uL4 PP4_RS02510 ed6027293765e8d4b3c8a030af68f589 200 Gene3D G3DSA:3.40.1370.10 52 199 1.1E-56 T 22-04-2016 IPR023574 Ribosomal protein L4 domain GO:0003735|GO:0005840|GO:0006412 PP4_RS15785 b3de2002647d07d5be39183745c191ca 323 PIRSF PIRSF036979 16 318 1.2E-75 T 22-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 PP4_RS15785 b3de2002647d07d5be39183745c191ca 323 ProSitePatterns PS01053 Arginase family signature. 240 261 - T 22-04-2016 IPR020855 Ureohydrolase, manganese-binding site GO:0016813|GO:0046872 Reactome: REACT_13 PP4_RS15785 b3de2002647d07d5be39183745c191ca 323 Gene3D G3DSA:3.40.800.10 9 317 2.3E-93 T 22-04-2016 IPR023696 Ureohydrolase domain PP4_RS15785 b3de2002647d07d5be39183745c191ca 323 PANTHER PTHR11358 1 315 6.8E-72 T 22-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 PP4_RS15785 b3de2002647d07d5be39183745c191ca 323 Pfam PF00491 Arginase family 35 310 1.8E-75 T 22-04-2016 IPR006035 Ureohydrolase GO:0046872 Reactome: REACT_13 PP4_RS15785 b3de2002647d07d5be39183745c191ca 323 SUPERFAMILY SSF52768 4 318 2.7E-83 T 22-04-2016 PP4_RS15785 b3de2002647d07d5be39183745c191ca 323 TIGRFAM TIGR01230 agmatinase: agmatinase 29 311 6.6E-57 T 22-04-2016 IPR005925 Agmatinase-related KEGG: 00330+3.5.3.11|MetaCyc: PWY-40|MetaCyc: PWY-6305|UniPathway: UPA00534 PP4_RS13970 29d4e73be155ae854c9df9cc85a6e344 316 PANTHER PTHR10584:SF186 1 309 1.0E-118 T 22-04-2016 PP4_RS13970 29d4e73be155ae854c9df9cc85a6e344 316 PANTHER PTHR10584 1 309 1.0E-118 T 22-04-2016 PP4_RS13970 29d4e73be155ae854c9df9cc85a6e344 316 SUPERFAMILY SSF53613 1 309 1.71E-81 T 22-04-2016 IPR029056 Ribokinase-like PP4_RS13970 29d4e73be155ae854c9df9cc85a6e344 316 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 255 268 - T 22-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 PP4_RS13970 29d4e73be155ae854c9df9cc85a6e344 316 Pfam PF00294 pfkB family carbohydrate kinase 4 302 2.0E-61 T 22-04-2016 IPR011611 Carbohydrate kinase PfkB PP4_RS13970 29d4e73be155ae854c9df9cc85a6e344 316 Gene3D G3DSA:3.40.1190.20 2 310 2.5E-88 T 22-04-2016 IPR029056 Ribokinase-like PP4_RS08075 13ef1af28da19970c4671e7158205d42 171 Hamap MF_00405 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase [fabA]. 1 171 51.334 T 22-04-2016 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 PP4_RS08075 13ef1af28da19970c4671e7158205d42 171 TIGRFAM TIGR01749 fabA: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA 3 171 7.9E-95 T 22-04-2016 IPR010083 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA GO:0005737|GO:0006633|GO:0008693 KEGG: 00061+4.2.1.59+5.3.3.14|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321|UniPathway: UPA00094 PP4_RS08075 13ef1af28da19970c4671e7158205d42 171 SUPERFAMILY SSF54637 2 168 9.94E-58 T 22-04-2016 IPR029069 HotDog domain PP4_RS08075 13ef1af28da19970c4671e7158205d42 171 Pfam PF07977 FabA-like domain 28 158 2.8E-53 T 22-04-2016 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWYG-321 PP4_RS08075 13ef1af28da19970c4671e7158205d42 171 Gene3D G3DSA:3.10.129.10 3 166 7.0E-61 T 22-04-2016 IPR029069 HotDog domain PP4_RS22520 4c7860f9a4a52b2dab5547ee96380670 6739 SUPERFAMILY SSF51120 6540 6732 1.31E-8 T 22-04-2016 IPR011049 Serralysin-like metalloprotease, C-terminal PP4_RS22520 4c7860f9a4a52b2dab5547ee96380670 6739 SUPERFAMILY SSF75011 2207 2460 1.83E-5 T 22-04-2016 PP4_RS22520 4c7860f9a4a52b2dab5547ee96380670 6739 Pfam PF12245 Bacterial Ig-like domain (group 3) 1495 1522 0.0062 T 22-04-2016 IPR022038 Bacterial Ig-like domain PP4_RS22520 4c7860f9a4a52b2dab5547ee96380670 6739 Pfam PF12245 Bacterial Ig-like domain (group 3) 1066 1093 0.015 T 22-04-2016 IPR022038 Bacterial Ig-like domain PP4_RS22520 4c7860f9a4a52b2dab5547ee96380670 6739 Pfam PF12245 Bacterial Ig-like domain (group 3) 2784 2808 0.12 T 22-04-2016 IPR022038 Bacterial Ig-like domain PP4_RS22520 4c7860f9a4a52b2dab5547ee96380670 6739 Pfam PF12245 Bacterial Ig-like domain (group 3) 1156 1180 0.041 T 22-04-2016 IPR022038 Bacterial Ig-like domain PP4_RS22520 4c7860f9a4a52b2dab5547ee96380670 6739 Pfam PF12245 Bacterial Ig-like domain (group 3) 2444 2467 0.11 T 22-04-2016 IPR022038 Bacterial Ig-like domain PP4_RS22520 4c7860f9a4a52b2dab5547ee96380670 6739 Pfam PF12245 Bacterial Ig-like domain (group 3) 3560 3587 3.5 T 22-04-2016 IPR022038 Bacterial Ig-like domain PP4_RS22520 4c7860f9a4a52b2dab5547ee96380670 6739 Pfam PF12245 Bacterial Ig-like domain (group 3) 4754 4774 3.5 T 22-04-2016 IPR022038 Bacterial Ig-like domain PP4_RS22520 4c7860f9a4a52b2dab5547ee96380670 6739 Pfam PF12245 Bacterial Ig-like domain (group 3) 2880 2898 0.3 T 22-04-2016 IPR022038 Bacterial Ig-like domain PP4_RS22520 4c7860f9a4a52b2dab5547ee96380670 6739 Pfam PF12245 Bacterial Ig-like domain (group 3) 728 751 0.27 T 22-04-2016 IPR022038 Bacterial Ig-like domain PP4_RS22520 4c7860f9a4a52b2dab5547ee96380670 6739 Pfam PF12245 Bacterial Ig-like domain (group 3) 5089 5113 0.053 T 22-04-2016 IPR022038 Bacterial Ig-like domain PP4_RS22520 4c7860f9a4a52b2dab5547ee96380670 6739 Pfam PF12245 Bacterial Ig-like domain (group 3) 3393 3413 0.31 T 22-04-2016 IPR022038 Bacterial Ig-like domain PP4_RS22520 4c7860f9a4a52b2dab5547ee96380670 6739 Pfam PF12245 Bacterial Ig-like domain (group 3) 2958 2982 0.98 T 22-04-2016 IPR022038 Bacterial Ig-like domain PP4_RS22520 4c7860f9a4a52b2dab5547ee96380670 6739 Pfam PF12245 Bacterial Ig-like domain (group 3) 3307 3329 0.67 T 22-04-2016 IPR022038 Bacterial Ig-like domain PP4_RS22520 4c7860f9a4a52b2dab5547ee96380670 6739 Pfam PF12245 Bacterial Ig-like domain (group 3) 2357 2379 0.092 T 22-04-2016 IPR022038 Bacterial Ig-like domain PP4_RS22520 4c7860f9a4a52b2dab5547ee96380670 6739 Pfam PF12245 Bacterial Ig-like domain (group 3) 1585 1609 0.041 T 22-04-2016 IPR022038 Bacterial Ig-like domain PP4_RS22520 4c7860f9a4a52b2dab5547ee96380670 6739 Pfam PF12245 Bacterial Ig-like domain (group 3) 2528 2551 3.3 T 22-04-2016 IPR022038 Bacterial Ig-like domain PP4_RS22520 4c7860f9a4a52b2dab5547ee96380670 6739 Pfam PF12245 Bacterial Ig-like domain (group 3) 4156 4175 3.5 T 22-04-2016 IPR022038 Bacterial Ig-like domain PP4_RS22520 4c7860f9a4a52b2dab5547ee96380670 6739 Pfam PF12245 Bacterial Ig-like domain (group 3) 637 664 0.0062 T 22-04-2016 IPR022038 Bacterial Ig-like domain PP4_RS22520 4c7860f9a4a52b2dab5547ee96380670 6739 Pfam PF12245 Bacterial Ig-like domain (group 3) 5346 5369 0.85 T 22-04-2016 IPR022038 Bacterial Ig-like domain PP4_RS22520 4c7860f9a4a52b2dab5547ee96380670 6739 Pfam PF12245 Bacterial Ig-like domain (group 3) 1924 1951 0.037 T 22-04-2016 IPR022038 Bacterial Ig-like domain PP4_RS06835 0030371350a51a7c17de661458d44dda 339 Gene3D G3DSA:2.40.40.20 275 339 8.0E-28 T 22-04-2016 PP4_RS06835 0030371350a51a7c17de661458d44dda 339 PANTHER PTHR30420 1 339 1.1E-237 T 22-04-2016 PP4_RS06835 0030371350a51a7c17de661458d44dda 339 Pfam PF04958 Arginine N-succinyltransferase beta subunit 1 337 8.8E-128 T 22-04-2016 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109|UniPathway: UPA00185 PP4_RS06835 0030371350a51a7c17de661458d44dda 339 SUPERFAMILY SSF55729 1 338 5.86E-121 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS06835 0030371350a51a7c17de661458d44dda 339 TIGRFAM TIGR03245 arg_AOST_alph: arginine/ornithine succinyltransferase, alpha subunit 3 339 1.1E-172 T 22-04-2016 IPR017651 Arginine/ornithine succinyltransferase, alpha subunit KEGG: 00330+2.3.1.109|UniPathway: UPA00185 PP4_RS06835 0030371350a51a7c17de661458d44dda 339 TIGRFAM TIGR03243 arg_catab_AOST: arginine and ornithine succinyltransferase subunits 3 338 4.5E-138 T 22-04-2016 IPR007041 Arginine N-succinyltransferase AstA/AruG GO:0006527|GO:0008791 KEGG: 00330+2.3.1.109|UniPathway: UPA00185 PP4_RS06835 0030371350a51a7c17de661458d44dda 339 PANTHER PTHR30420:SF3 1 339 1.1E-237 T 22-04-2016 PP4_RS08165 37325eea2fb83867b93d66c552239896 301 Pfam PF03466 LysR substrate binding domain 89 293 6.8E-23 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS08165 37325eea2fb83867b93d66c552239896 301 Gene3D G3DSA:3.40.190.10 181 256 3.7E-10 T 22-04-2016 PP4_RS08165 37325eea2fb83867b93d66c552239896 301 PANTHER PTHR30126:SF29 3 293 1.6E-65 T 22-04-2016 PP4_RS08165 37325eea2fb83867b93d66c552239896 301 Gene3D G3DSA:3.40.190.10 94 180 4.1E-8 T 22-04-2016 PP4_RS08165 37325eea2fb83867b93d66c552239896 301 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 7 63 4.1E-18 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS08165 37325eea2fb83867b93d66c552239896 301 SUPERFAMILY SSF53850 90 298 1.76E-26 T 22-04-2016 PP4_RS08165 37325eea2fb83867b93d66c552239896 301 Gene3D G3DSA:1.10.10.10 6 87 5.9E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS08165 37325eea2fb83867b93d66c552239896 301 PANTHER PTHR30126 3 293 1.6E-65 T 22-04-2016 PP4_RS08165 37325eea2fb83867b93d66c552239896 301 SUPERFAMILY SSF46785 5 88 7.62E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS03620 2e4d2235da6a1bc7810e5aec2ea8346a 335 TIGRFAM TIGR00203 cydB: cytochrome d ubiquinol oxidase, subunit II 6 213 6.4E-48 T 22-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 PP4_RS03620 2e4d2235da6a1bc7810e5aec2ea8346a 335 PIRSF PIRSF000267 2 335 2.3E-95 T 22-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 PP4_RS03620 2e4d2235da6a1bc7810e5aec2ea8346a 335 Pfam PF02322 Cytochrome bd terminal oxidase subunit II 5 324 2.1E-104 T 22-04-2016 IPR003317 Cytochrome ubiquinol oxidase subunit 2 GO:0016020|GO:0055114 PP4_RS03620 2e4d2235da6a1bc7810e5aec2ea8346a 335 PANTHER PTHR30365:SF4 1 335 3.0E-184 T 22-04-2016 PP4_RS03620 2e4d2235da6a1bc7810e5aec2ea8346a 335 PANTHER PTHR30365 1 335 3.0E-184 T 22-04-2016 PP4_RS19960 3f53fe42767da77533d2b43b9c989a37 646 Gene3D G3DSA:1.10.287.950 399 615 9.3E-56 T 22-04-2016 PP4_RS19960 3f53fe42767da77533d2b43b9c989a37 646 PANTHER PTHR32089 245 646 3.2E-114 T 22-04-2016 PP4_RS19960 3f53fe42767da77533d2b43b9c989a37 646 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 466 644 2.9E-43 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS19960 3f53fe42767da77533d2b43b9c989a37 646 Pfam PF00672 HAMP domain 298 364 7.8E-15 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS19960 3f53fe42767da77533d2b43b9c989a37 646 SMART SM00304 317 369 7.5E-9 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS19960 3f53fe42767da77533d2b43b9c989a37 646 SMART SM00304 201 252 70.0 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS19960 3f53fe42767da77533d2b43b9c989a37 646 SUPERFAMILY SSF58104 340 646 1.2E-69 T 22-04-2016 PP4_RS19960 3f53fe42767da77533d2b43b9c989a37 646 SMART SM00283 384 645 3.0E-68 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS19960 3f53fe42767da77533d2b43b9c989a37 646 SMART SM01358 37 295 4.5E-30 T 22-04-2016 IPR032255 Helical bimodular sensor domain PP4_RS15375 5e46cf8ba4708bb4aa30d6a87432ec9f 309 SMART SM00267 137 307 3.1E-27 T 22-04-2016 IPR000160 GGDEF domain PP4_RS15375 5e46cf8ba4708bb4aa30d6a87432ec9f 309 PANTHER PTHR10799 81 309 9.5E-12 T 22-04-2016 PP4_RS15375 5e46cf8ba4708bb4aa30d6a87432ec9f 309 PANTHER PTHR10799:SF710 81 309 9.5E-12 T 22-04-2016 PP4_RS15375 5e46cf8ba4708bb4aa30d6a87432ec9f 309 SUPERFAMILY SSF55073 153 307 4.39E-33 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS15375 5e46cf8ba4708bb4aa30d6a87432ec9f 309 Pfam PF00990 Diguanylate cyclase, GGDEF domain 150 303 1.6E-34 T 22-04-2016 IPR000160 GGDEF domain PP4_RS15375 5e46cf8ba4708bb4aa30d6a87432ec9f 309 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 149 306 4.3E-29 T 22-04-2016 IPR000160 GGDEF domain PP4_RS15375 5e46cf8ba4708bb4aa30d6a87432ec9f 309 Gene3D G3DSA:3.30.70.270 150 307 1.6E-37 T 22-04-2016 PP4_RS17555 10c474da8803145a57fe649d192da3dd 93 SUPERFAMILY SSF55729 6 88 1.72E-24 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS17555 10c474da8803145a57fe649d192da3dd 93 PANTHER PTHR31435:SF3 2 87 5.6E-39 T 22-04-2016 PP4_RS17555 10c474da8803145a57fe649d192da3dd 93 Gene3D G3DSA:3.40.630.30 2 88 1.1E-32 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS17555 10c474da8803145a57fe649d192da3dd 93 Pfam PF14542 GCN5-related N-acetyl-transferase 15 87 1.7E-23 T 22-04-2016 IPR031165 Yjdj-type Gcn5-related N-acetyltransferase PP4_RS17555 10c474da8803145a57fe649d192da3dd 93 PANTHER PTHR31435 2 87 5.6E-39 T 22-04-2016 PP4_RS19340 6ee3204f60259257430cacb3ec62d99c 214 Gene3D G3DSA:3.20.19.10 1 201 8.9E-51 T 22-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel PP4_RS19340 6ee3204f60259257430cacb3ec62d99c 214 Pfam PF00694 Aconitase C-terminal domain 1 132 2.8E-38 T 22-04-2016 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS19340 6ee3204f60259257430cacb3ec62d99c 214 PANTHER PTHR11670:SF27 1 208 5.6E-113 T 22-04-2016 PP4_RS19340 6ee3204f60259257430cacb3ec62d99c 214 TIGRFAM TIGR00171 leuD: 3-isopropylmalate dehydratase, small subunit 1 196 4.1E-91 T 22-04-2016 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS19340 6ee3204f60259257430cacb3ec62d99c 214 SUPERFAMILY SSF52016 1 201 2.16E-62 T 22-04-2016 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel PP4_RS19340 6ee3204f60259257430cacb3ec62d99c 214 Hamap MF_01031 3-isopropylmalate dehydratase small subunit [leuD]. 1 210 44.828 T 22-04-2016 IPR004431 3-isopropylmalate dehydratase, small subunit GO:0003861|GO:0009098|GO:0009316 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS19340 6ee3204f60259257430cacb3ec62d99c 214 PANTHER PTHR11670 1 208 5.6E-113 T 22-04-2016 IPR015937 Aconitase/isopropylmalate dehydratase GO:0008152 KEGG: 00290+4.2.1.33|UniPathway: UPA00048 PP4_RS17600 2aa8df39cb10a252d8b357c9e9b662d3 145 PANTHER PTHR33452 1 145 1.6E-40 T 22-04-2016 PP4_RS17600 2aa8df39cb10a252d8b357c9e9b662d3 145 PANTHER PTHR33452:SF1 1 145 1.6E-40 T 22-04-2016 PP4_RS17600 2aa8df39cb10a252d8b357c9e9b662d3 145 Pfam PF07681 DoxX 18 104 9.9E-22 T 22-04-2016 IPR032808 DoxX family PP4_RS02345 fce511f0e9e0334055cf1b7dd783208f 141 PIRSF PIRSF004638 1 141 5.0E-62 T 22-04-2016 IPR005265 Uncharacterised protein family UPF0093 PP4_RS02345 fce511f0e9e0334055cf1b7dd783208f 141 TIGRFAM TIGR00701 TIGR00701: TIGR00701 family protein 3 141 3.3E-49 T 22-04-2016 IPR014351 Conserved hypothetical protein CHP00701 PP4_RS02345 fce511f0e9e0334055cf1b7dd783208f 141 PANTHER PTHR40255 1 141 5.0E-64 T 22-04-2016 PP4_RS02345 fce511f0e9e0334055cf1b7dd783208f 141 Pfam PF03653 Uncharacterised protein family (UPF0093) 2 141 4.0E-59 T 22-04-2016 IPR005265 Uncharacterised protein family UPF0093 PP4_RS15430 8367cdcff87c07706f926a8fc1adae9e 199 Gene3D G3DSA:3.40.50.150 6 150 1.6E-15 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS15430 8367cdcff87c07706f926a8fc1adae9e 199 Pfam PF05401 Nodulation protein S (NodS) 14 140 3.4E-12 T 22-04-2016 IPR008715 SAM-dependent methyltransferase, NodS-related GO:0008757|GO:0009312|GO:0009877 KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- PP4_RS15430 8367cdcff87c07706f926a8fc1adae9e 199 SUPERFAMILY SSF53335 6 171 1.81E-21 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS14465 5f1dd3e77dedb3692c98604332eeb9fa 134 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 36 56 8.5E-9 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS14465 5f1dd3e77dedb3692c98604332eeb9fa 134 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 8.5E-9 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS14465 5f1dd3e77dedb3692c98604332eeb9fa 134 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 8.5E-9 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS14465 5f1dd3e77dedb3692c98604332eeb9fa 134 Pfam PF13411 MerR HTH family regulatory protein 2 68 1.7E-16 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS14465 5f1dd3e77dedb3692c98604332eeb9fa 134 SMART SM00422 1 69 2.6E-18 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS14465 5f1dd3e77dedb3692c98604332eeb9fa 134 Gene3D G3DSA:1.10.1660.10 55 110 2.7E-13 T 22-04-2016 PP4_RS14465 5f1dd3e77dedb3692c98604332eeb9fa 134 Gene3D G3DSA:1.10.1660.10 2 54 5.6E-22 T 22-04-2016 PP4_RS14465 5f1dd3e77dedb3692c98604332eeb9fa 134 PANTHER PTHR30204 2 118 1.4E-19 T 22-04-2016 PP4_RS14465 5f1dd3e77dedb3692c98604332eeb9fa 134 SUPERFAMILY SSF46955 2 109 4.4E-26 T 22-04-2016 IPR009061 Putative DNA-binding domain PP4_RS05750 7dbbd0599434e36d51a554f076b84069 230 Gene3D G3DSA:2.40.30.70 4 149 2.8E-54 T 22-04-2016 IPR023370 TsaA-like domain PP4_RS05750 7dbbd0599434e36d51a554f076b84069 230 PANTHER PTHR12818:SF6 4 227 3.0E-102 T 22-04-2016 PP4_RS05750 7dbbd0599434e36d51a554f076b84069 230 TIGRFAM TIGR00104 tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 3 143 2.7E-48 T 22-04-2016 IPR023370 TsaA-like domain PP4_RS05750 7dbbd0599434e36d51a554f076b84069 230 SUPERFAMILY SSF118196 2 218 1.83E-74 T 22-04-2016 IPR023370 TsaA-like domain PP4_RS05750 7dbbd0599434e36d51a554f076b84069 230 Pfam PF01980 Uncharacterised protein family UPF0066 20 138 7.7E-43 T 22-04-2016 IPR023370 TsaA-like domain PP4_RS05750 7dbbd0599434e36d51a554f076b84069 230 PANTHER PTHR12818 4 227 3.0E-102 T 22-04-2016 PP4_RS05750 7dbbd0599434e36d51a554f076b84069 230 ProSitePatterns PS01318 TsaA-like domain signature. 86 97 - T 22-04-2016 IPR023368 Uncharacterised protein family UPF0066, conserved site PP4_RS02915 fb254b84271043297a502db881a98e76 328 Pfam PF06414 Zeta toxin 35 206 4.5E-37 T 22-04-2016 IPR010488 Zeta toxin domain GO:0005524|GO:0016301 PP4_RS02915 fb254b84271043297a502db881a98e76 328 Gene3D G3DSA:3.40.50.300 37 216 2.5E-6 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS05565 a46b6ececaed16eba7ac13c381be0fb1 107 Pfam PF09634 Protein of unknown function (DUF2025) 1 104 1.3E-56 T 22-04-2016 IPR023117 PA1123-like domain PP4_RS05565 a46b6ececaed16eba7ac13c381be0fb1 107 SUPERFAMILY SSF160477 1 105 1.7E-55 T 22-04-2016 IPR023117 PA1123-like domain PP4_RS05565 a46b6ececaed16eba7ac13c381be0fb1 107 Gene3D G3DSA:3.90.1650.10 1 105 6.3E-61 T 22-04-2016 IPR023117 PA1123-like domain PP4_RS18915 19179c6b91f154cc345b1f0857eea3ef 188 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 27 181 3.6E-32 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS18915 19179c6b91f154cc345b1f0857eea3ef 188 SUPERFAMILY SSF88659 123 182 1.87E-10 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS18915 19179c6b91f154cc345b1f0857eea3ef 188 PANTHER PTHR30173 2 187 3.0E-87 T 22-04-2016 PP4_RS18915 19179c6b91f154cc345b1f0857eea3ef 188 Gene3D G3DSA:1.10.10.10 135 183 2.2E-10 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS18915 19179c6b91f154cc345b1f0857eea3ef 188 SUPERFAMILY SSF88946 7 116 2.98E-27 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS18915 19179c6b91f154cc345b1f0857eea3ef 188 Pfam PF04542 Sigma-70 region 2 31 98 1.8E-19 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS18915 19179c6b91f154cc345b1f0857eea3ef 188 Pfam PF04545 Sigma-70, region 4 131 180 4.7E-12 T 22-04-2016 IPR007630 RNA polymerase sigma-70 region 4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS18915 19179c6b91f154cc345b1f0857eea3ef 188 PANTHER PTHR30173:SF26 2 187 3.0E-87 T 22-04-2016 PP4_RS18915 19179c6b91f154cc345b1f0857eea3ef 188 Gene3D G3DSA:1.10.1740.10 5 118 1.3E-32 T 22-04-2016 PP4_RS15630 828be5ab97abbab7442b367484843545 222 Pfam PF11769 Protein of unknown function (DUF3313) 16 213 7.7E-58 T 22-04-2016 IPR021747 Protein of unknown function DUF3313 PP4_RS23230 70b4048cdea232d6a4d9e6711a69c896 358 Pfam PF13280 WYL domain 157 350 1.1E-18 T 22-04-2016 IPR026881 WYL domain PP4_RS03750 8ae53cdda34da6525447ff2a9e9b1e12 151 SUPERFAMILY SSF52218 1 150 7.14E-32 T 22-04-2016 IPR029039 Flavoprotein-like domain PP4_RS03750 8ae53cdda34da6525447ff2a9e9b1e12 151 Gene3D G3DSA:3.40.50.360 1 150 4.6E-29 T 22-04-2016 IPR029039 Flavoprotein-like domain PP4_RS03750 8ae53cdda34da6525447ff2a9e9b1e12 151 Pfam PF00258 Flavodoxin 5 141 1.8E-15 T 22-04-2016 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 PP4_RS03750 8ae53cdda34da6525447ff2a9e9b1e12 151 PANTHER PTHR19384 1 151 6.2E-15 T 22-04-2016 PP4_RS13840 e97f8775739306f3bfccf4307c5df6ee 463 Gene3D G3DSA:1.20.1250.20 6 195 1.4E-29 T 22-04-2016 PP4_RS13840 e97f8775739306f3bfccf4307c5df6ee 463 PANTHER PTHR23501:SF38 7 432 4.1E-107 T 22-04-2016 PP4_RS13840 e97f8775739306f3bfccf4307c5df6ee 463 Gene3D G3DSA:1.20.1250.20 258 454 2.8E-14 T 22-04-2016 PP4_RS13840 e97f8775739306f3bfccf4307c5df6ee 463 SUPERFAMILY SSF103473 243 454 3.79E-55 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS13840 e97f8775739306f3bfccf4307c5df6ee 463 SUPERFAMILY SSF103473 6 193 3.79E-55 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS13840 e97f8775739306f3bfccf4307c5df6ee 463 Pfam PF07690 Major Facilitator Superfamily 15 401 2.9E-41 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS13840 e97f8775739306f3bfccf4307c5df6ee 463 PANTHER PTHR23501 7 432 4.1E-107 T 22-04-2016 PP4_RS16620 6fdd749c179ae4773ee3ce671cde4f86 315 Pfam PF16220 Domain of unknown function (DUF4880) 13 54 2.2E-9 T 22-04-2016 IPR032623 FecR, N-terminal PP4_RS16620 6fdd749c179ae4773ee3ce671cde4f86 315 Pfam PF04773 FecR protein 109 201 8.4E-19 T 22-04-2016 IPR006860 FecR protein PP4_RS16620 6fdd749c179ae4773ee3ce671cde4f86 315 PIRSF PIRSF018266 3 315 2.9E-83 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS16620 6fdd749c179ae4773ee3ce671cde4f86 315 PANTHER PTHR30273:SF3 5 313 3.4E-94 T 22-04-2016 PP4_RS16620 6fdd749c179ae4773ee3ce671cde4f86 315 PANTHER PTHR30273 5 313 3.4E-94 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS08205 54cf37d55c83fc472e574d2dfbdde729 357 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 143 350 9.9E-37 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS08205 54cf37d55c83fc472e574d2dfbdde729 357 PANTHER PTHR30465:SF66 61 352 4.4E-211 T 22-04-2016 PP4_RS08205 54cf37d55c83fc472e574d2dfbdde729 357 PANTHER PTHR30465:SF66 1 45 4.4E-211 T 22-04-2016 PP4_RS08205 54cf37d55c83fc472e574d2dfbdde729 357 SUPERFAMILY SSF161098 120 334 1.01E-15 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS08205 54cf37d55c83fc472e574d2dfbdde729 357 Gene3D G3DSA:1.10.3720.10 120 342 1.8E-16 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS08205 54cf37d55c83fc472e574d2dfbdde729 357 PANTHER PTHR30465 61 352 4.4E-211 T 22-04-2016 PP4_RS08205 54cf37d55c83fc472e574d2dfbdde729 357 PANTHER PTHR30465 1 45 4.4E-211 T 22-04-2016 PP4_RS11670 df05b9315d70d421b3f0f61ed51218ab 140 Pfam PF13404 AsnC-type helix-turn-helix domain 1 42 9.5E-12 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS11670 df05b9315d70d421b3f0f61ed51218ab 140 Pfam PF01037 Lrp/AsnC ligand binding domain 69 137 7.1E-16 T 22-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PP4_RS11670 df05b9315d70d421b3f0f61ed51218ab 140 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 17 28 3.5E-10 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS11670 df05b9315d70d421b3f0f61ed51218ab 140 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 1 17 3.5E-10 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS11670 df05b9315d70d421b3f0f61ed51218ab 140 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 28 47 3.5E-10 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS11670 df05b9315d70d421b3f0f61ed51218ab 140 Gene3D G3DSA:3.30.70.920 54 139 7.7E-16 T 22-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PP4_RS11670 df05b9315d70d421b3f0f61ed51218ab 140 SMART SM00344 1 107 2.4E-25 T 22-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 PP4_RS11670 df05b9315d70d421b3f0f61ed51218ab 140 SUPERFAMILY SSF54909 62 139 3.0E-17 T 22-04-2016 IPR011008 Dimeric alpha-beta barrel PP4_RS11670 df05b9315d70d421b3f0f61ed51218ab 140 PANTHER PTHR30154 1 140 1.7E-34 T 22-04-2016 PP4_RS11670 df05b9315d70d421b3f0f61ed51218ab 140 SUPERFAMILY SSF46785 1 58 6.59E-13 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS11670 df05b9315d70d421b3f0f61ed51218ab 140 Gene3D G3DSA:1.10.10.10 1 53 1.4E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS23285 d4c26f9fa9246086308f8b312eae05df 207 Gene3D G3DSA:3.40.50.300 7 200 1.9E-68 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23285 d4c26f9fa9246086308f8b312eae05df 207 SUPERFAMILY SSF52540 10 197 1.71E-39 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS23285 d4c26f9fa9246086308f8b312eae05df 207 Pfam PF01121 Dephospho-CoA kinase 9 185 5.4E-72 T 22-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 PP4_RS23285 d4c26f9fa9246086308f8b312eae05df 207 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 8 202 27.6 T 22-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 PP4_RS23285 d4c26f9fa9246086308f8b312eae05df 207 PANTHER PTHR10695 5 200 4.7E-69 T 22-04-2016 PP4_RS23285 d4c26f9fa9246086308f8b312eae05df 207 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 10 193 1.7E-52 T 22-04-2016 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|UniPathway: UPA00241 PP4_RS07215 ef959dea9eb3bfa543e878a1512c5de0 101 SUPERFAMILY SSF52091 5 100 9.22E-21 T 22-04-2016 IPR002645 STAS domain PP4_RS07215 ef959dea9eb3bfa543e878a1512c5de0 101 Gene3D G3DSA:3.30.750.24 4 100 1.1E-19 T 22-04-2016 IPR002645 STAS domain PP4_RS07215 ef959dea9eb3bfa543e878a1512c5de0 101 Pfam PF13466 STAS domain 16 94 5.8E-12 T 22-04-2016 IPR002645 STAS domain PP4_RS07245 5ed4c0fd218c05a949e1a300e414d9dd 154 PRINTS PR00956 Flagellar motor switch protein FliN signature 107 120 3.2E-28 T 22-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 PP4_RS07245 5ed4c0fd218c05a949e1a300e414d9dd 154 PRINTS PR00956 Flagellar motor switch protein FliN signature 74 90 3.2E-28 T 22-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 PP4_RS07245 5ed4c0fd218c05a949e1a300e414d9dd 154 PRINTS PR00956 Flagellar motor switch protein FliN signature 120 135 3.2E-28 T 22-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 PP4_RS07245 5ed4c0fd218c05a949e1a300e414d9dd 154 PRINTS PR00956 Flagellar motor switch protein FliN signature 91 107 3.2E-28 T 22-04-2016 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb GO:0003774|GO:0006935|GO:0009425|GO:0071973 PP4_RS07245 5ed4c0fd218c05a949e1a300e414d9dd 154 PANTHER PTHR22617 51 153 1.5E-34 T 22-04-2016 PP4_RS07245 5ed4c0fd218c05a949e1a300e414d9dd 154 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 75 144 1.7E-24 T 22-04-2016 IPR001543 Surface presentation of antigen (SpoA) PP4_RS07245 5ed4c0fd218c05a949e1a300e414d9dd 154 SUPERFAMILY SSF101801 71 152 1.23E-25 T 22-04-2016 IPR001543 Surface presentation of antigen (SpoA) PP4_RS07245 5ed4c0fd218c05a949e1a300e414d9dd 154 TIGRFAM TIGR02480 fliN: flagellar motor switch protein FliN 71 146 1.7E-33 T 22-04-2016 IPR012826 Flagellar motor switch FliN GO:0006935|GO:0009288|GO:0016020|GO:0071973 PP4_RS07245 5ed4c0fd218c05a949e1a300e414d9dd 154 Gene3D G3DSA:2.30.330.10 68 154 5.4E-38 T 22-04-2016 PP4_RS15900 b519b1b5efae703728c0e04427b21e16 310 PANTHER PTHR11935 52 248 5.6E-23 T 22-04-2016 PP4_RS15900 b519b1b5efae703728c0e04427b21e16 310 PANTHER PTHR11935:SF95 52 248 5.6E-23 T 22-04-2016 PP4_RS15900 b519b1b5efae703728c0e04427b21e16 310 Pfam PF00753 Metallo-beta-lactamase superfamily 47 231 1.2E-18 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS15900 b519b1b5efae703728c0e04427b21e16 310 TIGRFAM TIGR04558 SoxH_rel_PQQ_1: quinoprotein relay system zinc metallohydrolase 1 19 303 1.4E-129 T 22-04-2016 IPR030811 Quinoprotein relay system zinc metallohydrolase 1 PP4_RS15900 b519b1b5efae703728c0e04427b21e16 310 SMART SM00849 50 231 2.3E-22 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS15900 b519b1b5efae703728c0e04427b21e16 310 Gene3D G3DSA:3.60.15.10 21 251 9.6E-45 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS15900 b519b1b5efae703728c0e04427b21e16 310 SUPERFAMILY SSF56281 8 310 3.92E-62 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS08300 adb2205b410ae267ba911fe22eaecf47 617 PANTHER PTHR22773:SF50 1 570 2.0E-222 T 22-04-2016 PP4_RS08300 adb2205b410ae267ba911fe22eaecf47 617 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 249 275 2.1E-54 T 22-04-2016 PP4_RS08300 adb2205b410ae267ba911fe22eaecf47 617 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 227 248 2.1E-54 T 22-04-2016 PP4_RS08300 adb2205b410ae267ba911fe22eaecf47 617 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 159 180 2.1E-54 T 22-04-2016 PP4_RS08300 adb2205b410ae267ba911fe22eaecf47 617 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 112 132 2.1E-54 T 22-04-2016 PP4_RS08300 adb2205b410ae267ba911fe22eaecf47 617 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 317 329 2.1E-54 T 22-04-2016 PP4_RS08300 adb2205b410ae267ba911fe22eaecf47 617 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 84 109 2.1E-54 T 22-04-2016 PP4_RS08300 adb2205b410ae267ba911fe22eaecf47 617 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 420 439 2.1E-54 T 22-04-2016 PP4_RS08300 adb2205b410ae267ba911fe22eaecf47 617 TIGRFAM TIGR01974 NDH_I_L: proton-translocating NADH-quinone oxidoreductase, chain L 2 612 9.7E-233 T 22-04-2016 IPR003945 NADH-plastoquinone oxidoreductase, chain 5 GO:0008137|GO:0042773|GO:0055114 PP4_RS08300 adb2205b410ae267ba911fe22eaecf47 617 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 419 441 5.0E-9 T 22-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 PP4_RS08300 adb2205b410ae267ba911fe22eaecf47 617 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 267 289 5.0E-9 T 22-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 PP4_RS08300 adb2205b410ae267ba911fe22eaecf47 617 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 86 106 5.0E-9 T 22-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 PP4_RS08300 adb2205b410ae267ba911fe22eaecf47 617 PRINTS PR01435 NADH-plastoquinone oxidoreductase chain 5 signature 60 84 5.0E-9 T 22-04-2016 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup GO:0008137|GO:0042773|GO:0055114 PP4_RS08300 adb2205b410ae267ba911fe22eaecf47 617 Pfam PF00361 Proton-conducting membrane transporter 136 427 4.6E-88 T 22-04-2016 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: REACT_6305 PP4_RS08300 adb2205b410ae267ba911fe22eaecf47 617 Pfam PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus 66 123 4.6E-22 T 22-04-2016 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal PP4_RS08300 adb2205b410ae267ba911fe22eaecf47 617 PANTHER PTHR22773 1 570 2.0E-222 T 22-04-2016 PP4_RS27055 78d50ff06b1bb5732f6b2bbaf2719e7b 692 PANTHER PTHR24031:SF249 300 601 1.7E-125 T 22-04-2016 PP4_RS27055 78d50ff06b1bb5732f6b2bbaf2719e7b 692 PANTHER PTHR24031:SF249 259 283 1.7E-125 T 22-04-2016 PP4_RS27055 78d50ff06b1bb5732f6b2bbaf2719e7b 692 PANTHER PTHR24031:SF249 625 670 1.7E-125 T 22-04-2016 PP4_RS27055 78d50ff06b1bb5732f6b2bbaf2719e7b 692 Gene3D G3DSA:3.40.50.300 454 637 4.9E-44 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS27055 78d50ff06b1bb5732f6b2bbaf2719e7b 692 Pfam PF00271 Helicase conserved C-terminal domain 480 587 1.9E-19 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS27055 78d50ff06b1bb5732f6b2bbaf2719e7b 692 Pfam PF00270 DEAD/DEAH box helicase 291 431 2.7E-18 T 22-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 PP4_RS27055 78d50ff06b1bb5732f6b2bbaf2719e7b 692 SMART SM00490 504 588 4.2E-23 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS27055 78d50ff06b1bb5732f6b2bbaf2719e7b 692 Gene3D G3DSA:2.40.50.140 45 138 1.1E-19 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS27055 78d50ff06b1bb5732f6b2bbaf2719e7b 692 Pfam PF17191 RecG wedge domain 9 170 4.5E-15 T 22-04-2016 IPR033454 RecG, wedge domain PP4_RS27055 78d50ff06b1bb5732f6b2bbaf2719e7b 692 SUPERFAMILY SSF52540 318 599 5.03E-55 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS27055 78d50ff06b1bb5732f6b2bbaf2719e7b 692 SUPERFAMILY SSF50249 7 172 3.94E-35 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS27055 78d50ff06b1bb5732f6b2bbaf2719e7b 692 Gene3D G3DSA:1.10.150.20 4 35 2.5E-4 T 22-04-2016 PP4_RS27055 78d50ff06b1bb5732f6b2bbaf2719e7b 692 PANTHER PTHR24031 300 601 1.7E-125 T 22-04-2016 PP4_RS27055 78d50ff06b1bb5732f6b2bbaf2719e7b 692 PANTHER PTHR24031 259 283 1.7E-125 T 22-04-2016 PP4_RS27055 78d50ff06b1bb5732f6b2bbaf2719e7b 692 PANTHER PTHR24031 625 670 1.7E-125 T 22-04-2016 PP4_RS27055 78d50ff06b1bb5732f6b2bbaf2719e7b 692 SMART SM00487 266 459 1.2E-27 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PP4_RS27055 78d50ff06b1bb5732f6b2bbaf2719e7b 692 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 27 664 2.8E-222 T 22-04-2016 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 PP4_RS27055 78d50ff06b1bb5732f6b2bbaf2719e7b 692 Gene3D G3DSA:3.40.50.300 256 453 1.3E-50 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS10775 3f923ccac0456161c3d0f8f1fed60ed0 274 SUPERFAMILY SSF51430 2 268 1.31E-86 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain PP4_RS10775 3f923ccac0456161c3d0f8f1fed60ed0 274 ProSitePatterns PS00798 Aldo/keto reductase family signature 1. 38 55 - T 22-04-2016 IPR018170 Aldo/keto reductase, conserved site GO:0016491|GO:0055114 PP4_RS10775 3f923ccac0456161c3d0f8f1fed60ed0 274 Pfam PF00248 Aldo/keto reductase family 15 257 2.0E-53 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain PP4_RS10775 3f923ccac0456161c3d0f8f1fed60ed0 274 Gene3D G3DSA:3.20.20.100 2 269 2.4E-88 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain PP4_RS10775 3f923ccac0456161c3d0f8f1fed60ed0 274 PRINTS PR00069 Aldo-keto reductase signature 90 108 2.5E-38 T 22-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PP4_RS10775 3f923ccac0456161c3d0f8f1fed60ed0 274 PRINTS PR00069 Aldo-keto reductase signature 192 216 2.5E-38 T 22-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PP4_RS10775 3f923ccac0456161c3d0f8f1fed60ed0 274 PRINTS PR00069 Aldo-keto reductase signature 121 138 2.5E-38 T 22-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PP4_RS10775 3f923ccac0456161c3d0f8f1fed60ed0 274 PRINTS PR00069 Aldo-keto reductase signature 155 184 2.5E-38 T 22-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PP4_RS10775 3f923ccac0456161c3d0f8f1fed60ed0 274 PRINTS PR00069 Aldo-keto reductase signature 34 58 2.5E-38 T 22-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PP4_RS10775 3f923ccac0456161c3d0f8f1fed60ed0 274 PANTHER PTHR11732 1 268 4.3E-122 T 22-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta PP4_RS16585 dc43e608adb554793744f77cfff8b03f 923 Gene3D G3DSA:2.30.38.10 335 415 2.0E-22 T 22-04-2016 PP4_RS16585 dc43e608adb554793744f77cfff8b03f 923 TIGRFAM TIGR01733 AA-adenyl-dom: amino acid adenylation domain 45 450 3.3E-107 T 22-04-2016 IPR010071 Amino acid adenylation domain PP4_RS16585 dc43e608adb554793744f77cfff8b03f 923 Gene3D G3DSA:3.40.50.980 171 328 2.3E-30 T 22-04-2016 PP4_RS16585 dc43e608adb554793744f77cfff8b03f 923 Pfam PF13193 AMP-binding enzyme C-terminal domain 434 506 5.6E-14 T 22-04-2016 IPR025110 AMP-binding enzyme C-terminal domain PP4_RS16585 dc43e608adb554793744f77cfff8b03f 923 Gene3D G3DSA:3.30.300.30 422 532 2.7E-36 T 22-04-2016 PP4_RS16585 dc43e608adb554793744f77cfff8b03f 923 Pfam PF00501 AMP-binding enzyme 25 426 1.6E-75 T 22-04-2016 IPR000873 AMP-dependent synthetase/ligase GO:0003824|GO:0008152 PP4_RS16585 dc43e608adb554793744f77cfff8b03f 923 SUPERFAMILY SSF47336 526 572 3.24E-5 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS16585 dc43e608adb554793744f77cfff8b03f 923 Gene3D G3DSA:3.40.50.980 19 170 2.5E-32 T 22-04-2016 PP4_RS16585 dc43e608adb554793744f77cfff8b03f 923 PANTHER PTHR24095 19 592 5.3E-137 T 22-04-2016 PP4_RS16585 dc43e608adb554793744f77cfff8b03f 923 Pfam PF00550 Phosphopantetheine attachment site 529 569 7.6E-5 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS16585 dc43e608adb554793744f77cfff8b03f 923 ProSitePatterns PS00455 Putative AMP-binding domain signature. 166 177 - T 22-04-2016 IPR020845 AMP-binding, conserved site PP4_RS16585 dc43e608adb554793744f77cfff8b03f 923 PANTHER PTHR24095:SF137 19 592 5.3E-137 T 22-04-2016 PP4_RS16585 dc43e608adb554793744f77cfff8b03f 923 Gene3D G3DSA:1.10.1200.10 533 572 1.2E-8 T 22-04-2016 IPR009081 Phosphopantetheine binding ACP domain PP4_RS16585 dc43e608adb554793744f77cfff8b03f 923 SUPERFAMILY SSF56801 17 541 1.44E-131 T 22-04-2016 PP4_RS06480 cb87991ce0bc628fde9695d00a9b2ec4 314 Pfam PF12146 Serine aminopeptidase, S33 26 289 3.6E-66 T 22-04-2016 IPR022742 Serine aminopeptidase, S33 PP4_RS06480 cb87991ce0bc628fde9695d00a9b2ec4 314 PANTHER PTHR11614 15 303 6.5E-51 T 22-04-2016 PP4_RS06480 cb87991ce0bc628fde9695d00a9b2ec4 314 PANTHER PTHR11614:SF87 15 303 6.5E-51 T 22-04-2016 PP4_RS06480 cb87991ce0bc628fde9695d00a9b2ec4 314 PIRSF PIRSF037442 1 296 1.2E-53 T 22-04-2016 IPR017208 Uncharacterised conserved protein UCP037442, alpha/beta hydrolase, RSp0795 PP4_RS06480 cb87991ce0bc628fde9695d00a9b2ec4 314 Gene3D G3DSA:3.40.50.1820 4 147 4.1E-53 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS06480 cb87991ce0bc628fde9695d00a9b2ec4 314 Gene3D G3DSA:3.40.50.1820 184 304 4.1E-53 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS06480 cb87991ce0bc628fde9695d00a9b2ec4 314 SUPERFAMILY SSF53474 4 305 1.02E-44 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS14550 8aced33a1e95413f267a105a3a42fae8 247 SUPERFAMILY SSF53448 5 232 2.16E-40 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS14550 8aced33a1e95413f267a105a3a42fae8 247 PANTHER PTHR10859:SF49 7 234 3.4E-70 T 22-04-2016 PP4_RS14550 8aced33a1e95413f267a105a3a42fae8 247 PANTHER PTHR10859 7 234 3.4E-70 T 22-04-2016 PP4_RS14550 8aced33a1e95413f267a105a3a42fae8 247 Pfam PF00535 Glycosyl transferase family 2 8 172 9.8E-26 T 22-04-2016 IPR001173 Glycosyltransferase 2-like PP4_RS14550 8aced33a1e95413f267a105a3a42fae8 247 Gene3D G3DSA:3.90.550.10 7 180 1.4E-23 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS16905 72caaadd115c156ebf9ea0e8fd04752e 93 PANTHER PTHR35601:SF2 1 93 2.0E-42 T 22-04-2016 PP4_RS16905 72caaadd115c156ebf9ea0e8fd04752e 93 Pfam PF05016 ParE toxin of type II toxin-antitoxin system, parDE 5 83 1.8E-13 T 22-04-2016 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family PP4_RS16905 72caaadd115c156ebf9ea0e8fd04752e 93 PANTHER PTHR35601 1 93 2.0E-42 T 22-04-2016 PP4_RS16905 72caaadd115c156ebf9ea0e8fd04752e 93 SUPERFAMILY SSF143011 1 82 1.7E-19 T 22-04-2016 PP4_RS16905 72caaadd115c156ebf9ea0e8fd04752e 93 TIGRFAM TIGR02385 RelE_StbE: addiction module toxin, RelE/StbE family 4 86 2.0E-9 T 22-04-2016 IPR007712 Toxin-antitoxin system, RelE/ParE toxin family PP4_RS23380 ef6e1e998b6d104d54fee0a07a2b5c39 215 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 27 1.6E-4 T 22-04-2016 IPR012902 Prokaryotic N-terminal methylation site PP4_RS14120 fa4c97e8b6b65eeccd109f2b16e0ac35 444 Pfam PF00296 Luciferase-like monooxygenase 15 383 2.8E-66 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS14120 fa4c97e8b6b65eeccd109f2b16e0ac35 444 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 7 427 5.6E-175 T 22-04-2016 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 PP4_RS14120 fa4c97e8b6b65eeccd109f2b16e0ac35 444 PIRSF PIRSF000337 1 442 2.9E-163 T 22-04-2016 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 PP4_RS14120 fa4c97e8b6b65eeccd109f2b16e0ac35 444 Gene3D G3DSA:3.20.20.30 2 305 9.2E-135 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS14120 fa4c97e8b6b65eeccd109f2b16e0ac35 444 Gene3D G3DSA:3.20.20.30 345 434 9.2E-135 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS14120 fa4c97e8b6b65eeccd109f2b16e0ac35 444 PANTHER PTHR30011 1 438 5.3E-205 T 22-04-2016 PP4_RS14120 fa4c97e8b6b65eeccd109f2b16e0ac35 444 SUPERFAMILY SSF51679 1 433 2.62E-131 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS14120 fa4c97e8b6b65eeccd109f2b16e0ac35 444 PANTHER PTHR30011:SF18 1 438 5.3E-205 T 22-04-2016 PP4_RS20195 8176db5ac528165ee5f5be5ea00accd4 246 Pfam PF00106 short chain dehydrogenase 15 210 8.0E-45 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS20195 8176db5ac528165ee5f5be5ea00accd4 246 PANTHER PTHR24322:SF337 166 198 8.3E-79 T 22-04-2016 PP4_RS20195 8176db5ac528165ee5f5be5ea00accd4 246 PANTHER PTHR24322:SF337 18 150 8.3E-79 T 22-04-2016 PP4_RS20195 8176db5ac528165ee5f5be5ea00accd4 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 92 103 4.6E-21 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS20195 8176db5ac528165ee5f5be5ea00accd4 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 140 156 4.6E-21 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS20195 8176db5ac528165ee5f5be5ea00accd4 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 15 32 4.6E-21 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS20195 8176db5ac528165ee5f5be5ea00accd4 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 166 185 4.6E-21 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS20195 8176db5ac528165ee5f5be5ea00accd4 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 188 205 4.6E-21 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS20195 8176db5ac528165ee5f5be5ea00accd4 246 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 14 200 0.0079 T 22-04-2016 PP4_RS20195 8176db5ac528165ee5f5be5ea00accd4 246 PANTHER PTHR24322 166 198 8.3E-79 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS20195 8176db5ac528165ee5f5be5ea00accd4 246 PANTHER PTHR24322 18 150 8.3E-79 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS20195 8176db5ac528165ee5f5be5ea00accd4 246 Gene3D G3DSA:3.40.50.720 10 244 4.7E-61 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS20195 8176db5ac528165ee5f5be5ea00accd4 246 SUPERFAMILY SSF51735 10 244 6.84E-56 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS20195 8176db5ac528165ee5f5be5ea00accd4 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 153 181 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PP4_RS23520 b3e6aeb9be94c87870cd1d6f28cc6b0b 92 PANTHER PTHR36121:SF1 1 77 8.0E-28 T 22-04-2016 PP4_RS23520 b3e6aeb9be94c87870cd1d6f28cc6b0b 92 Gene3D G3DSA:1.10.150.20 2 90 4.9E-28 T 22-04-2016 PP4_RS23520 b3e6aeb9be94c87870cd1d6f28cc6b0b 92 PANTHER PTHR36121 1 77 8.0E-28 T 22-04-2016 PP4_RS23520 b3e6aeb9be94c87870cd1d6f28cc6b0b 92 Pfam PF04994 TfoX C-terminal domain 1 80 5.7E-30 T 22-04-2016 IPR007077 TfoX, C-terminal PP4_RS18590 aa16be5336a8a13652b2c25609d1a13c 232 SMART SM00382 40 228 3.3E-14 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS18590 aa16be5336a8a13652b2c25609d1a13c 232 PANTHER PTHR24220 13 229 1.5E-118 T 22-04-2016 PP4_RS18590 aa16be5336a8a13652b2c25609d1a13c 232 ProSitePatterns PS00211 ABC transporters family signature. 152 166 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS18590 aa16be5336a8a13652b2c25609d1a13c 232 PANTHER PTHR24220:SF111 13 229 1.5E-118 T 22-04-2016 PP4_RS18590 aa16be5336a8a13652b2c25609d1a13c 232 Gene3D G3DSA:3.40.50.300 7 231 2.0E-68 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS18590 aa16be5336a8a13652b2c25609d1a13c 232 Pfam PF00005 ABC transporter 31 179 3.8E-34 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS18590 aa16be5336a8a13652b2c25609d1a13c 232 TIGRFAM TIGR02211 LolD_lipo_ex: lipoprotein releasing system, ATP-binding protein 11 230 3.7E-98 T 22-04-2016 IPR011924 Lipoprotein releasing system, ATP-binding protein GO:0005524|GO:0006810|GO:0016020 PP4_RS18590 aa16be5336a8a13652b2c25609d1a13c 232 SUPERFAMILY SSF52540 11 231 3.03E-68 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS11980 f9df3050b31601c0834fa18637daa27c 282 PANTHER PTHR22855 1 241 9.0E-76 T 22-04-2016 PP4_RS11980 f9df3050b31601c0834fa18637daa27c 282 SUPERFAMILY SSF52096 3 234 5.97E-40 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS11980 f9df3050b31601c0834fa18637daa27c 282 Pfam PF01039 Carboxyl transferase domain 18 236 7.3E-15 T 22-04-2016 IPR000022 Carboxyl transferase KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PP4_RS11980 f9df3050b31601c0834fa18637daa27c 282 TIGRFAM TIGR03133 malonate_beta: biotin-independent malonate decarboxylase, beta subunit 11 278 6.3E-113 T 22-04-2016 IPR017556 Biotin-independent malonate decarboxylase, beta subunit GO:0016831|GO:0044262 MetaCyc: PWY-6060 PP4_RS11980 f9df3050b31601c0834fa18637daa27c 282 Gene3D G3DSA:3.90.226.10 15 242 6.7E-35 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS11980 f9df3050b31601c0834fa18637daa27c 282 PANTHER PTHR22855:SF21 1 241 9.0E-76 T 22-04-2016 PP4_RS16425 016d5d74611c594ec78c6a472930b33f 275 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 83 206 2.2E-12 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PP4_RS16425 016d5d74611c594ec78c6a472930b33f 275 PANTHER PTHR18901:SF45 3 273 4.7E-118 T 22-04-2016 PP4_RS16425 016d5d74611c594ec78c6a472930b33f 275 Pfam PF00702 haloacid dehalogenase-like hydrolase 14 201 4.6E-7 T 22-04-2016 PP4_RS16425 016d5d74611c594ec78c6a472930b33f 275 Hamap MF_01375 Phosphonoacetaldehyde hydrolase [phnX]. 1 275 140.401 T 22-04-2016 IPR006323 Phosphonoacetaldehyde hydrolase GO:0019700|GO:0050194 KEGG: 00440+3.11.1.1 PP4_RS16425 016d5d74611c594ec78c6a472930b33f 275 PANTHER PTHR18901 3 273 4.7E-118 T 22-04-2016 PP4_RS16425 016d5d74611c594ec78c6a472930b33f 275 Gene3D G3DSA:3.40.50.1000 107 260 7.0E-31 T 22-04-2016 IPR023214 HAD-like domain PP4_RS16425 016d5d74611c594ec78c6a472930b33f 275 Gene3D G3DSA:3.40.50.1000 7 27 7.0E-31 T 22-04-2016 IPR023214 HAD-like domain PP4_RS16425 016d5d74611c594ec78c6a472930b33f 275 SUPERFAMILY SSF56784 10 262 5.17E-57 T 22-04-2016 IPR023214 HAD-like domain PP4_RS16425 016d5d74611c594ec78c6a472930b33f 275 Gene3D G3DSA:1.10.150.240 28 104 9.2E-36 T 22-04-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 PP4_RS16425 016d5d74611c594ec78c6a472930b33f 275 TIGRFAM TIGR01422 phosphonatase: phosphonoacetaldehyde hydrolase 8 260 1.7E-112 T 22-04-2016 IPR006323 Phosphonoacetaldehyde hydrolase GO:0019700|GO:0050194 KEGG: 00440+3.11.1.1 PP4_RS17255 045dd7186c5cdf0de439a4fcc0f21865 202 Pfam PF02630 SCO1/SenC 37 178 8.3E-40 T 22-04-2016 IPR003782 Copper chaperone SCO1/SenC PP4_RS17255 045dd7186c5cdf0de439a4fcc0f21865 202 Gene3D G3DSA:3.40.30.10 15 200 2.1E-53 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS17255 045dd7186c5cdf0de439a4fcc0f21865 202 PANTHER PTHR12151 31 200 6.0E-53 T 22-04-2016 IPR003782 Copper chaperone SCO1/SenC PP4_RS17255 045dd7186c5cdf0de439a4fcc0f21865 202 SUPERFAMILY SSF52833 46 199 1.26E-45 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS05810 5920c14e8c59d9a16c96971dc0afd3c0 880 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 38 328 1.3E-13 T 22-04-2016 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD PP4_RS05810 5920c14e8c59d9a16c96971dc0afd3c0 880 PANTHER PTHR34697:SF2 23 870 2.6E-295 T 22-04-2016 PP4_RS05810 5920c14e8c59d9a16c96971dc0afd3c0 880 SUPERFAMILY SSF55729 675 850 2.75E-13 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS05810 5920c14e8c59d9a16c96971dc0afd3c0 880 PANTHER PTHR34697 23 870 2.6E-295 T 22-04-2016 PP4_RS05810 5920c14e8c59d9a16c96971dc0afd3c0 880 Pfam PF09924 Uncharacterised conserved protein (DUF2156) 566 852 7.4E-94 T 22-04-2016 IPR024320 Phosphatidylglycerol lysyltransferase, C-terminal PP4_RS12875 1e7b81634038158cb00b30de45671903 416 Gene3D G3DSA:2.40.160.10 28 416 2.4E-141 T 22-04-2016 IPR023614 Porin domain PP4_RS12875 1e7b81634038158cb00b30de45671903 416 PANTHER PTHR34596 18 416 8.2E-143 T 22-04-2016 PP4_RS12875 1e7b81634038158cb00b30de45671903 416 Pfam PF03573 outer membrane porin, OprD family 24 414 9.6E-150 T 22-04-2016 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 PP4_RS04685 836b12b37e5fd169ce3405cd40c1e832 490 PANTHER PTHR11101 2 487 8.8E-197 T 22-04-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 PP4_RS04685 836b12b37e5fd169ce3405cd40c1e832 490 PANTHER PTHR11101:SF59 2 487 8.8E-197 T 22-04-2016 PP4_RS04685 836b12b37e5fd169ce3405cd40c1e832 490 Pfam PF01384 Phosphate transporter family 198 478 1.3E-42 T 22-04-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 PP4_RS04685 836b12b37e5fd169ce3405cd40c1e832 490 Pfam PF01384 Phosphate transporter family 30 180 6.9E-35 T 22-04-2016 IPR001204 Phosphate transporter GO:0005315|GO:0006817|GO:0016020 Reactome: REACT_15518 PP4_RS10735 1537752ee02bbad6639552fea8c6b96f 343 PANTHER PTHR10625 4 74 1.8E-86 T 22-04-2016 IPR000286 Histone deacetylase superfamily PP4_RS10735 1537752ee02bbad6639552fea8c6b96f 343 Gene3D G3DSA:3.40.800.20 7 333 1.5E-75 T 22-04-2016 IPR023801 Histone deacetylase domain PP4_RS10735 1537752ee02bbad6639552fea8c6b96f 343 PANTHER PTHR10625 99 336 1.8E-86 T 22-04-2016 IPR000286 Histone deacetylase superfamily PP4_RS10735 1537752ee02bbad6639552fea8c6b96f 343 Pfam PF00850 Histone deacetylase domain 27 329 6.6E-65 T 22-04-2016 IPR023801 Histone deacetylase domain PP4_RS10735 1537752ee02bbad6639552fea8c6b96f 343 SUPERFAMILY SSF52768 4 339 2.93E-85 T 22-04-2016 PP4_RS10735 1537752ee02bbad6639552fea8c6b96f 343 PRINTS PR01270 Histone deacetylase superfamily signature 155 178 4.6E-14 T 22-04-2016 IPR000286 Histone deacetylase superfamily PP4_RS10735 1537752ee02bbad6639552fea8c6b96f 343 PRINTS PR01270 Histone deacetylase superfamily signature 274 284 4.6E-14 T 22-04-2016 IPR000286 Histone deacetylase superfamily PP4_RS10735 1537752ee02bbad6639552fea8c6b96f 343 PRINTS PR01270 Histone deacetylase superfamily signature 188 203 4.6E-14 T 22-04-2016 IPR000286 Histone deacetylase superfamily PP4_RS10735 1537752ee02bbad6639552fea8c6b96f 343 PANTHER PTHR10625:SF121 4 74 1.8E-86 T 22-04-2016 PP4_RS10735 1537752ee02bbad6639552fea8c6b96f 343 PANTHER PTHR10625:SF121 99 336 1.8E-86 T 22-04-2016 PP4_RS04455 882763a301b70ccbae465d6b04cd0a1c 436 SUPERFAMILY SSF47384 194 276 1.53E-14 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS04455 882763a301b70ccbae465d6b04cd0a1c 436 Gene3D G3DSA:3.30.565.10 284 423 1.2E-29 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS04455 882763a301b70ccbae465d6b04cd0a1c 436 SMART SM00388 211 277 6.4E-13 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS04455 882763a301b70ccbae465d6b04cd0a1c 436 Pfam PF00672 HAMP domain 137 207 1.2E-12 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS04455 882763a301b70ccbae465d6b04cd0a1c 436 SMART SM00387 322 426 3.9E-27 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS04455 882763a301b70ccbae465d6b04cd0a1c 436 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 324 423 6.5E-17 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS04455 882763a301b70ccbae465d6b04cd0a1c 436 Pfam PF00512 His Kinase A (phospho-acceptor) domain 213 275 3.0E-12 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS04455 882763a301b70ccbae465d6b04cd0a1c 436 SUPERFAMILY SSF55874 286 422 1.83E-30 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS04455 882763a301b70ccbae465d6b04cd0a1c 436 PANTHER PTHR24423 2 13 1.3E-53 T 22-04-2016 PP4_RS04455 882763a301b70ccbae465d6b04cd0a1c 436 PANTHER PTHR24423 150 422 1.3E-53 T 22-04-2016 PP4_RS04455 882763a301b70ccbae465d6b04cd0a1c 436 Gene3D G3DSA:1.10.287.130 204 273 2.6E-12 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS04455 882763a301b70ccbae465d6b04cd0a1c 436 SMART SM00304 156 210 4.2E-6 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS04455 882763a301b70ccbae465d6b04cd0a1c 436 PRINTS PR00344 Bacterial sensor protein C-terminal signature 386 404 4.7E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS04455 882763a301b70ccbae465d6b04cd0a1c 436 PRINTS PR00344 Bacterial sensor protein C-terminal signature 410 423 4.7E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS04455 882763a301b70ccbae465d6b04cd0a1c 436 PRINTS PR00344 Bacterial sensor protein C-terminal signature 372 382 4.7E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS04455 882763a301b70ccbae465d6b04cd0a1c 436 PRINTS PR00344 Bacterial sensor protein C-terminal signature 354 368 4.7E-9 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS19080 98083bcc617d238ab83fe34f71b69788 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 64 1.6E-22 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS19080 98083bcc617d238ab83fe34f71b69788 297 Gene3D G3DSA:3.40.190.10 91 181 2.8E-24 T 22-04-2016 PP4_RS19080 98083bcc617d238ab83fe34f71b69788 297 PANTHER PTHR30419 1 294 6.7E-127 T 22-04-2016 PP4_RS19080 98083bcc617d238ab83fe34f71b69788 297 SUPERFAMILY SSF46785 3 113 3.41E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS19080 98083bcc617d238ab83fe34f71b69788 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 31 41 5.3E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS19080 98083bcc617d238ab83fe34f71b69788 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 20 31 5.3E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS19080 98083bcc617d238ab83fe34f71b69788 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 41 52 5.3E-10 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS19080 98083bcc617d238ab83fe34f71b69788 297 Pfam PF03466 LysR substrate binding domain 89 293 7.1E-51 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS19080 98083bcc617d238ab83fe34f71b69788 297 PANTHER PTHR30419:SF0 1 294 6.7E-127 T 22-04-2016 PP4_RS19080 98083bcc617d238ab83fe34f71b69788 297 SUPERFAMILY SSF53850 92 295 9.19E-52 T 22-04-2016 PP4_RS19080 98083bcc617d238ab83fe34f71b69788 297 Gene3D G3DSA:3.40.190.10 182 263 9.7E-25 T 22-04-2016 PP4_RS19080 98083bcc617d238ab83fe34f71b69788 297 Gene3D G3DSA:1.10.10.10 4 89 5.6E-29 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS01765 2a8fed1e7efdd6d08a1473ef6851ef4d 645 PANTHER PTHR32089 157 645 6.8E-142 T 22-04-2016 PP4_RS01765 2a8fed1e7efdd6d08a1473ef6851ef4d 645 SUPERFAMILY SSF58104 336 645 2.09E-77 T 22-04-2016 PP4_RS01765 2a8fed1e7efdd6d08a1473ef6851ef4d 645 Pfam PF02743 Cache domain 51 276 1.0E-18 T 22-04-2016 IPR033479 Double Cache domain 1 PP4_RS01765 2a8fed1e7efdd6d08a1473ef6851ef4d 645 SMART SM00304 314 368 1.4E-12 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS01765 2a8fed1e7efdd6d08a1473ef6851ef4d 645 PANTHER PTHR32089:SF39 157 645 6.8E-142 T 22-04-2016 PP4_RS01765 2a8fed1e7efdd6d08a1473ef6851ef4d 645 Gene3D G3DSA:3.30.450.20 172 291 2.3E-20 T 22-04-2016 PP4_RS01765 2a8fed1e7efdd6d08a1473ef6851ef4d 645 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 452 643 4.0E-47 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS01765 2a8fed1e7efdd6d08a1473ef6851ef4d 645 Pfam PF00672 HAMP domain 296 362 9.8E-16 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS01765 2a8fed1e7efdd6d08a1473ef6851ef4d 645 SMART SM00283 383 644 2.4E-81 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS01765 2a8fed1e7efdd6d08a1473ef6851ef4d 645 Gene3D G3DSA:1.10.287.950 398 615 2.3E-57 T 22-04-2016 PP4_RS23200 bc318dffa4e2bfbaddaf14c4072d9e26 657 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 15 495 5.5E-197 T 22-04-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 PP4_RS23200 bc318dffa4e2bfbaddaf14c4072d9e26 657 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 53 495 1.3E-163 T 22-04-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 PP4_RS23200 bc318dffa4e2bfbaddaf14c4072d9e26 657 PANTHER PTHR30047:SF2 5 656 2.0E-304 T 22-04-2016 PP4_RS23200 bc318dffa4e2bfbaddaf14c4072d9e26 657 PANTHER PTHR30047 5 656 2.0E-304 T 22-04-2016 PP4_RS23200 bc318dffa4e2bfbaddaf14c4072d9e26 657 ProSitePatterns PS01303 BCCT family of transporters signature. 315 324 - T 22-04-2016 IPR018093 BCCT transporter, conserved site GO:0005215|GO:0006810|GO:0016020 PP4_RS22935 3f10bc19be68d8010552bb0ff8b2cd09 570 Pfam PF01740 STAS domain 446 556 1.6E-20 T 22-04-2016 IPR002645 STAS domain PP4_RS22935 3f10bc19be68d8010552bb0ff8b2cd09 570 Pfam PF00916 Sulfate permease family 27 391 2.2E-86 T 22-04-2016 IPR011547 SLC26A/SulP transporter domain GO:0008272|GO:0015116|GO:0016021 PP4_RS22935 3f10bc19be68d8010552bb0ff8b2cd09 570 Gene3D G3DSA:3.30.750.24 449 559 3.9E-17 T 22-04-2016 IPR002645 STAS domain PP4_RS22935 3f10bc19be68d8010552bb0ff8b2cd09 570 TIGRFAM TIGR00815 sulP: sulfate permease 16 556 1.6E-122 T 22-04-2016 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 Reactome: REACT_15518 PP4_RS22935 3f10bc19be68d8010552bb0ff8b2cd09 570 PANTHER PTHR11814 9 563 4.9E-167 T 22-04-2016 IPR001902 SLC26A/SulP transporter GO:0008271|GO:0008272|GO:0016020|GO:0055085 Reactome: REACT_15518 PP4_RS22935 3f10bc19be68d8010552bb0ff8b2cd09 570 SUPERFAMILY SSF52091 448 559 5.89E-16 T 22-04-2016 IPR002645 STAS domain PP4_RS08960 1c6f094747378f392ac71ffe8fc9378b 223 ProSitePatterns PS01243 Bax inhibitor-1 family signature. 89 120 - T 22-04-2016 IPR006213 Bax inhibitor 1, conserved site GO:0016021|GO:0043066 PP4_RS08960 1c6f094747378f392ac71ffe8fc9378b 223 PANTHER PTHR23291 18 223 2.2E-103 T 22-04-2016 IPR006214 Bax inhibitor 1-related PP4_RS08960 1c6f094747378f392ac71ffe8fc9378b 223 PANTHER PTHR23291:SF37 18 223 2.2E-103 T 22-04-2016 PP4_RS08960 1c6f094747378f392ac71ffe8fc9378b 223 Pfam PF01027 Inhibitor of apoptosis-promoting Bax1 21 216 8.1E-40 T 22-04-2016 PP4_RS14560 23300ca28c35d3a5575ad936a38d168b 509 PANTHER PTHR33908 12 382 5.6E-66 T 22-04-2016 PP4_RS14560 23300ca28c35d3a5575ad936a38d168b 509 Pfam PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase 64 198 4.6E-17 T 22-04-2016 PP4_RS14560 23300ca28c35d3a5575ad936a38d168b 509 PANTHER PTHR33908:SF3 12 382 5.6E-66 T 22-04-2016 PP4_RS00565 c2074e53d6a25958d4b0fb1fc9612eb2 95 Pfam PF11191 Protein of unknown function (DUF2782) 21 95 1.7E-22 T 22-04-2016 IPR021357 Protein of unknown function DUF2782 PP4_RS19595 43d29d3a7b39669b8ccba2bb7108bfa5 259 PRINTS PR00164 ABC-2 type transport system membrane protein signature 142 166 4.6E-10 T 22-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 PP4_RS19595 43d29d3a7b39669b8ccba2bb7108bfa5 259 PRINTS PR00164 ABC-2 type transport system membrane protein signature 61 83 4.6E-10 T 22-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 PP4_RS19595 43d29d3a7b39669b8ccba2bb7108bfa5 259 PRINTS PR00164 ABC-2 type transport system membrane protein signature 199 218 4.6E-10 T 22-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 PP4_RS19595 43d29d3a7b39669b8ccba2bb7108bfa5 259 PRINTS PR00164 ABC-2 type transport system membrane protein signature 179 198 4.6E-10 T 22-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 PP4_RS19595 43d29d3a7b39669b8ccba2bb7108bfa5 259 PANTHER PTHR30413 1 258 1.4E-150 T 22-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 PP4_RS19595 43d29d3a7b39669b8ccba2bb7108bfa5 259 PANTHER PTHR30413:SF2 1 258 1.4E-150 T 22-04-2016 PP4_RS19595 43d29d3a7b39669b8ccba2bb7108bfa5 259 Pfam PF01061 ABC-2 type transporter 13 221 1.0E-39 T 22-04-2016 IPR013525 ABC-2 type transporter GO:0016020 PP4_RS19595 43d29d3a7b39669b8ccba2bb7108bfa5 259 PIRSF PIRSF006648 3 255 7.8E-24 T 22-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 PP4_RS11060 7562f4f5a2e47116805c855b33bb67a1 198 Pfam PF06684 Amino acid synthesis 5 181 1.3E-71 T 22-04-2016 IPR009569 Amino acid synthesis, putative PP4_RS11060 7562f4f5a2e47116805c855b33bb67a1 198 SUPERFAMILY SSF160519 1 190 2.09E-70 T 22-04-2016 IPR009569 Amino acid synthesis, putative PP4_RS11060 7562f4f5a2e47116805c855b33bb67a1 198 Gene3D G3DSA:3.30.1330.110 1 191 3.0E-85 T 22-04-2016 IPR009569 Amino acid synthesis, putative PP4_RS03135 8d5a0b5c384c0dd79198248160730989 215 PANTHER PTHR30353 1 207 8.6E-85 T 22-04-2016 IPR032818 DedA family PP4_RS03135 8d5a0b5c384c0dd79198248160730989 215 Pfam PF09335 SNARE associated Golgi protein 47 172 1.2E-23 T 22-04-2016 IPR032816 SNARE associated Golgi protein PP4_RS03135 8d5a0b5c384c0dd79198248160730989 215 PANTHER PTHR30353:SF0 1 207 8.6E-85 T 22-04-2016 PP4_RS18345 13dd97cae8a058ba45e7029494f61388 184 SUPERFAMILY SSF47413 6 72 1.1E-14 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS18345 13dd97cae8a058ba45e7029494f61388 184 Gene3D G3DSA:2.60.120.10 94 183 2.3E-18 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS18345 13dd97cae8a058ba45e7029494f61388 184 SMART SM00530 13 68 4.6E-10 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS18345 13dd97cae8a058ba45e7029494f61388 184 SUPERFAMILY SSF51182 54 183 4.59E-23 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS18345 13dd97cae8a058ba45e7029494f61388 184 Pfam PF07883 Cupin domain 114 183 6.2E-13 T 22-04-2016 IPR013096 Cupin 2, conserved barrel PP4_RS18345 13dd97cae8a058ba45e7029494f61388 184 PANTHER PTHR10245 8 183 7.9E-35 T 22-04-2016 PP4_RS18345 13dd97cae8a058ba45e7029494f61388 184 Gene3D G3DSA:1.10.260.40 2 74 7.2E-17 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS18345 13dd97cae8a058ba45e7029494f61388 184 Pfam PF01381 Helix-turn-helix 15 68 5.7E-10 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS18345 13dd97cae8a058ba45e7029494f61388 184 PANTHER PTHR10245:SF53 8 183 7.9E-35 T 22-04-2016 PP4_RS22360 3d0346b58997b38815171c4a170b686f 111 Pfam PF02699 Preprotein translocase subunit 27 100 1.0E-27 T 22-04-2016 IPR003849 Preprotein translocase YajC PP4_RS22360 3d0346b58997b38815171c4a170b686f 111 PANTHER PTHR33909 1 111 1.2E-34 T 22-04-2016 PP4_RS22360 3d0346b58997b38815171c4a170b686f 111 PRINTS PR01853 Bacterial YajC preprotein translocase signature 23 43 1.05E-11 T 22-04-2016 IPR003849 Preprotein translocase YajC PP4_RS22360 3d0346b58997b38815171c4a170b686f 111 PRINTS PR01853 Bacterial YajC preprotein translocase signature 61 79 1.05E-11 T 22-04-2016 IPR003849 Preprotein translocase YajC PP4_RS22360 3d0346b58997b38815171c4a170b686f 111 SMART SM01323 21 103 1.1E-40 T 22-04-2016 IPR003849 Preprotein translocase YajC PP4_RS22360 3d0346b58997b38815171c4a170b686f 111 PANTHER PTHR33909:SF1 1 111 1.2E-34 T 22-04-2016 PP4_RS22360 3d0346b58997b38815171c4a170b686f 111 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 26 103 8.6E-28 T 22-04-2016 IPR003849 Preprotein translocase YajC PP4_RS25735 c7639d1f872591963887298589f566ff 198 Pfam PF06041 Bacterial protein of unknown function (DUF924) 9 195 4.5E-52 T 22-04-2016 IPR010323 Protein of unknown function DUF924 PP4_RS25735 c7639d1f872591963887298589f566ff 198 Gene3D G3DSA:1.25.40.10 89 198 3.3E-30 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS25735 c7639d1f872591963887298589f566ff 198 PANTHER PTHR23004 27 198 8.9E-61 T 22-04-2016 PP4_RS25735 c7639d1f872591963887298589f566ff 198 Gene3D G3DSA:1.20.58.320 7 87 3.0E-17 T 22-04-2016 PP4_RS25735 c7639d1f872591963887298589f566ff 198 SUPERFAMILY SSF48452 3 194 4.17E-50 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS25735 c7639d1f872591963887298589f566ff 198 PANTHER PTHR23004:SF7 27 198 8.9E-61 T 22-04-2016 PP4_RS19720 7a2ae5774f45dafdb3d4058107489573 295 PANTHER PTHR10120 1 293 6.7E-91 T 22-04-2016 PP4_RS19720 7a2ae5774f45dafdb3d4058107489573 295 PANTHER PTHR10120:SF19 1 293 6.7E-91 T 22-04-2016 PP4_RS19720 7a2ae5774f45dafdb3d4058107489573 295 Hamap MF_00188 Protease HtpX [htpX]. 1 294 25.08 T 22-04-2016 IPR022919 Peptidase M48, protease HtpX, putative GO:0004222 PP4_RS19720 7a2ae5774f45dafdb3d4058107489573 295 Pfam PF01435 Peptidase family M48 82 294 6.6E-37 T 22-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 PP4_RS19720 7a2ae5774f45dafdb3d4058107489573 295 Gene3D G3DSA:3.30.2010.10 77 164 9.2E-31 T 22-04-2016 PP4_RS14860 6c538010b55b9de96da091e3fbb2ab16 347 SUPERFAMILY SSF53850 27 344 2.04E-63 T 22-04-2016 PP4_RS14860 6c538010b55b9de96da091e3fbb2ab16 347 PANTHER PTHR30222:SF2 12 347 2.3E-148 T 22-04-2016 PP4_RS14860 6c538010b55b9de96da091e3fbb2ab16 347 PANTHER PTHR30222 12 347 2.3E-148 T 22-04-2016 PP4_RS14860 6c538010b55b9de96da091e3fbb2ab16 347 Gene3D G3DSA:3.40.190.10 129 287 3.5E-37 T 22-04-2016 PP4_RS14860 6c538010b55b9de96da091e3fbb2ab16 347 Pfam PF13416 Bacterial extracellular solute-binding protein 56 311 1.7E-43 T 22-04-2016 PP4_RS09665 85a732c7b2efa21ace7c941adfb60c29 140 Gene3D G3DSA:1.10.10.10 5 137 5.8E-36 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS09665 85a732c7b2efa21ace7c941adfb60c29 140 PANTHER PTHR33164:SF13 1 138 1.2E-67 T 22-04-2016 PP4_RS09665 85a732c7b2efa21ace7c941adfb60c29 140 PRINTS PR00598 Bacterial regulatory protein MarR family signature 115 135 2.9E-5 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS09665 85a732c7b2efa21ace7c941adfb60c29 140 PRINTS PR00598 Bacterial regulatory protein MarR family signature 85 101 2.9E-5 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS09665 85a732c7b2efa21ace7c941adfb60c29 140 PRINTS PR00598 Bacterial regulatory protein MarR family signature 66 81 2.9E-5 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS09665 85a732c7b2efa21ace7c941adfb60c29 140 SUPERFAMILY SSF46785 7 136 9.23E-31 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS09665 85a732c7b2efa21ace7c941adfb60c29 140 SMART SM00347 25 125 6.8E-26 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS09665 85a732c7b2efa21ace7c941adfb60c29 140 Pfam PF01047 MarR family 32 90 3.4E-16 T 22-04-2016 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 PP4_RS09665 85a732c7b2efa21ace7c941adfb60c29 140 PANTHER PTHR33164 1 138 1.2E-67 T 22-04-2016 PP4_RS09665 85a732c7b2efa21ace7c941adfb60c29 140 ProSitePatterns PS01117 MarR-type HTH domain signature. 64 98 - T 22-04-2016 IPR023187 Transcriptional regulator MarR-type, conserved site PP4_RS09665 85a732c7b2efa21ace7c941adfb60c29 140 TIGRFAM TIGR02337 HpaR: homoprotocatechuate degradation operon regulator, HpaR 7 135 6.8E-57 T 22-04-2016 IPR012712 Homoprotocatechuate degradation transcriptional regulator HpaR GO:0003677|GO:0010124|GO:0045892 PP4_RS03665 6f07bccb2ed28a1d9650f98e78d03919 688 Pfam PF02554 Carbon starvation protein CstA 35 411 3.7E-168 T 22-04-2016 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 PP4_RS03665 6f07bccb2ed28a1d9650f98e78d03919 688 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 466 594 3.2E-35 T 22-04-2016 IPR025299 CstA, C-terminal domain PP4_RS03665 6f07bccb2ed28a1d9650f98e78d03919 688 PANTHER PTHR30252:SF3 9 688 0.0 T 22-04-2016 PP4_RS03665 6f07bccb2ed28a1d9650f98e78d03919 688 PANTHER PTHR30252 9 688 0.0 T 22-04-2016 PP4_RS11955 da8bc3ff6b4c39efa1c17145927e8110 383 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 123 218 1.4E-28 T 22-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 PP4_RS11955 da8bc3ff6b4c39efa1c17145927e8110 383 Gene3D G3DSA:2.40.110.10 122 219 5.6E-41 T 22-04-2016 PP4_RS11955 da8bc3ff6b4c39efa1c17145927e8110 383 Gene3D G3DSA:1.20.140.10 220 378 4.2E-72 T 22-04-2016 PP4_RS11955 da8bc3ff6b4c39efa1c17145927e8110 383 Gene3D G3DSA:1.10.540.10 3 120 9.4E-42 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS11955 da8bc3ff6b4c39efa1c17145927e8110 383 SUPERFAMILY SSF56645 3 243 6.54E-86 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 PP4_RS11955 da8bc3ff6b4c39efa1c17145927e8110 383 PANTHER PTHR10909 2 379 1.6E-168 T 22-04-2016 PP4_RS11955 da8bc3ff6b4c39efa1c17145927e8110 383 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 337 356 - T 22-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 PP4_RS11955 da8bc3ff6b4c39efa1c17145927e8110 383 SUPERFAMILY SSF47203 228 381 1.42E-58 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS11955 da8bc3ff6b4c39efa1c17145927e8110 383 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 230 378 2.1E-50 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS11955 da8bc3ff6b4c39efa1c17145927e8110 383 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 7 119 7.8E-38 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS11955 da8bc3ff6b4c39efa1c17145927e8110 383 PIRSF PIRSF016578 4 380 1.1E-26 T 22-04-2016 PP4_RS11955 da8bc3ff6b4c39efa1c17145927e8110 383 PANTHER PTHR10909:SF10 2 379 1.6E-168 T 22-04-2016 PP4_RS03385 69e3fbdcba7d7b8bda3203cc3f5e12ab 237 Gene3D G3DSA:1.10.10.10 4 88 1.9E-16 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS03385 69e3fbdcba7d7b8bda3203cc3f5e12ab 237 Pfam PF12840 Helix-turn-helix domain 9 68 8.1E-7 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS03385 69e3fbdcba7d7b8bda3203cc3f5e12ab 237 PANTHER PTHR39168 1 234 3.6E-46 T 22-04-2016 PP4_RS03385 69e3fbdcba7d7b8bda3203cc3f5e12ab 237 SUPERFAMILY SSF46785 6 87 1.22E-14 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS03385 69e3fbdcba7d7b8bda3203cc3f5e12ab 237 SMART SM00418 9 88 3.7E-10 T 22-04-2016 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 PP4_RS03385 69e3fbdcba7d7b8bda3203cc3f5e12ab 237 PANTHER PTHR39168:SF1 1 234 3.6E-46 T 22-04-2016 PP4_RS16930 7356b115598207db2936920f691f3d67 217 PANTHER PTHR23026:SF101 1 215 1.2E-82 T 22-04-2016 PP4_RS16930 7356b115598207db2936920f691f3d67 217 Gene3D G3DSA:3.40.109.10 1 216 1.7E-62 T 22-04-2016 IPR000415 Nitroreductase-like GO:0016491 PP4_RS16930 7356b115598207db2936920f691f3d67 217 PANTHER PTHR23026 1 215 1.2E-82 T 22-04-2016 PP4_RS16930 7356b115598207db2936920f691f3d67 217 Pfam PF00881 Nitroreductase family 8 193 3.1E-29 T 22-04-2016 IPR029479 Nitroreductase PP4_RS16930 7356b115598207db2936920f691f3d67 217 SUPERFAMILY SSF55469 1 215 1.7E-65 T 22-04-2016 IPR000415 Nitroreductase-like GO:0016491 PP4_RS06380 a932ba3c801314632abd121dd6ffefc2 291 PANTHER PTHR12715 6 278 2.7E-51 T 22-04-2016 PP4_RS06380 a932ba3c801314632abd121dd6ffefc2 291 SUPERFAMILY SSF103481 186 289 7.19E-14 T 22-04-2016 PP4_RS06380 a932ba3c801314632abd121dd6ffefc2 291 Pfam PF00892 EamA-like transporter family 9 135 1.2E-15 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS06380 a932ba3c801314632abd121dd6ffefc2 291 Pfam PF00892 EamA-like transporter family 150 286 1.5E-18 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS06380 a932ba3c801314632abd121dd6ffefc2 291 SUPERFAMILY SSF103481 46 138 2.09E-13 T 22-04-2016 PP4_RS06380 a932ba3c801314632abd121dd6ffefc2 291 PANTHER PTHR12715:SF17 6 278 2.7E-51 T 22-04-2016 PP4_RS14150 2ca54b095d48e21f977bf1abc554da79 264 Gene3D G3DSA:3.40.225.10 21 234 9.6E-61 T 22-04-2016 IPR001303 Class II aldolase/adducin N-terminal PP4_RS14150 2ca54b095d48e21f977bf1abc554da79 264 SUPERFAMILY SSF53639 21 215 4.91E-58 T 22-04-2016 IPR001303 Class II aldolase/adducin N-terminal PP4_RS14150 2ca54b095d48e21f977bf1abc554da79 264 PANTHER PTHR10672 19 259 1.0E-100 T 22-04-2016 PP4_RS14150 2ca54b095d48e21f977bf1abc554da79 264 SMART SM01007 27 208 2.6E-57 T 22-04-2016 IPR001303 Class II aldolase/adducin N-terminal PP4_RS14150 2ca54b095d48e21f977bf1abc554da79 264 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 28 208 9.3E-44 T 22-04-2016 IPR001303 Class II aldolase/adducin N-terminal PP4_RS04145 64a8fea85b901e9bd1cd907075cf5191 254 SMART SM00382 39 226 1.6E-16 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS04145 64a8fea85b901e9bd1cd907075cf5191 254 PIRSF PIRSF039085 11 254 2.0E-107 T 22-04-2016 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 PP4_RS04145 64a8fea85b901e9bd1cd907075cf5191 254 PANTHER PTHR24220 16 254 2.7E-173 T 22-04-2016 PP4_RS04145 64a8fea85b901e9bd1cd907075cf5191 254 SUPERFAMILY SSF52540 14 248 6.63E-82 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS04145 64a8fea85b901e9bd1cd907075cf5191 254 Gene3D G3DSA:3.40.50.300 14 250 1.3E-84 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS04145 64a8fea85b901e9bd1cd907075cf5191 254 PANTHER PTHR24220:SF490 16 254 2.7E-173 T 22-04-2016 PP4_RS04145 64a8fea85b901e9bd1cd907075cf5191 254 Pfam PF00005 ABC transporter 30 178 9.2E-38 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS04145 64a8fea85b901e9bd1cd907075cf5191 254 ProSitePatterns PS00211 ABC transporters family signature. 150 164 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS23795 15a5bf159c33b2a746cbb9ef891a0173 556 Pfam PF02652 L-lactate permease 16 544 3.0E-211 T 22-04-2016 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 PP4_RS23795 15a5bf159c33b2a746cbb9ef891a0173 556 PANTHER PTHR30003:SF6 2 555 0.0 T 22-04-2016 PP4_RS23795 15a5bf159c33b2a746cbb9ef891a0173 556 PANTHER PTHR30003 2 555 0.0 T 22-04-2016 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 PP4_RS23795 15a5bf159c33b2a746cbb9ef891a0173 556 TIGRFAM TIGR00795 lctP: transporter, lactate permease (LctP) family 7 547 7.7E-228 T 22-04-2016 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 PP4_RS24450 faa0afef1fee78e2158569dcfd0fd2f3 265 SUPERFAMILY SSF53613 6 256 1.96E-63 T 22-04-2016 IPR029056 Ribokinase-like PP4_RS24450 faa0afef1fee78e2158569dcfd0fd2f3 265 Pfam PF08543 Phosphomethylpyrimidine kinase 17 253 9.8E-71 T 22-04-2016 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase UniPathway: UPA00647 PP4_RS24450 faa0afef1fee78e2158569dcfd0fd2f3 265 PANTHER PTHR20858 1 262 4.9E-71 T 22-04-2016 PP4_RS24450 faa0afef1fee78e2158569dcfd0fd2f3 265 Gene3D G3DSA:3.40.1190.20 8 256 1.7E-74 T 22-04-2016 IPR029056 Ribokinase-like PP4_RS19450 1f275b6381fac8cacc680cc11e09c25d 186 Gene3D G3DSA:2.30.270.10 87 156 3.9E-31 T 22-04-2016 IPR023361 Protein of unknown function DUF1285, beta-roll domain PP4_RS19450 1f275b6381fac8cacc680cc11e09c25d 186 Pfam PF06938 Protein of unknown function (DUF1285) 36 180 2.1E-58 T 22-04-2016 IPR010707 Protein of unknown function DUF1285 PP4_RS19450 1f275b6381fac8cacc680cc11e09c25d 186 Gene3D G3DSA:3.10.540.10 12 86 9.8E-37 T 22-04-2016 PP4_RS19450 1f275b6381fac8cacc680cc11e09c25d 186 PIRSF PIRSF029557 1 186 6.4E-82 T 22-04-2016 IPR010707 Protein of unknown function DUF1285 PP4_RS19450 1f275b6381fac8cacc680cc11e09c25d 186 Gene3D G3DSA:2.20.70.10 168 185 2.6E-4 T 22-04-2016 PP4_RS20060 593287093cabc109fcda852fe6439993 665 SUPERFAMILY SSF51735 163 286 2.6E-16 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS20060 593287093cabc109fcda852fe6439993 665 Gene3D G3DSA:3.40.50.720 156 243 1.7E-13 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS20060 593287093cabc109fcda852fe6439993 665 Pfam PF02719 Polysaccharide biosynthesis protein 301 608 9.5E-126 T 22-04-2016 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain PP4_RS20060 593287093cabc109fcda852fe6439993 665 SUPERFAMILY SSF51735 299 586 1.98E-53 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS20060 593287093cabc109fcda852fe6439993 665 Gene3D G3DSA:3.90.25.10 500 584 5.8E-8 T 22-04-2016 PP4_RS20060 593287093cabc109fcda852fe6439993 665 PANTHER PTHR10366 300 455 2.8E-126 T 22-04-2016 PP4_RS20060 593287093cabc109fcda852fe6439993 665 PANTHER PTHR10366 471 592 2.8E-126 T 22-04-2016 PP4_RS20060 593287093cabc109fcda852fe6439993 665 Pfam PF13727 CoA-binding domain 70 256 6.8E-7 T 22-04-2016 PP4_RS20060 593287093cabc109fcda852fe6439993 665 PANTHER PTHR10366:SF256 300 455 2.8E-126 T 22-04-2016 PP4_RS20060 593287093cabc109fcda852fe6439993 665 PANTHER PTHR10366:SF256 471 592 2.8E-126 T 22-04-2016 PP4_RS20060 593287093cabc109fcda852fe6439993 665 Gene3D G3DSA:3.40.50.720 300 499 5.5E-40 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS13030 dde7ec0db5b873be9f12df249460e501 155 Pfam PF04116 Fatty acid hydroxylase superfamily 20 134 2.5E-7 T 22-04-2016 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0006633|GO:0016491|GO:0055114 PP4_RS13030 dde7ec0db5b873be9f12df249460e501 155 PANTHER PTHR31899 1 139 1.2E-20 T 22-04-2016 PP4_RS08795 f7e98c47109dc65e971899142c009f9b 276 SUPERFAMILY SSF55811 93 262 1.35E-42 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PP4_RS08795 f7e98c47109dc65e971899142c009f9b 276 SUPERFAMILY SSF55811 5 110 1.46E-20 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PP4_RS08795 f7e98c47109dc65e971899142c009f9b 276 Gene3D G3DSA:3.90.79.10 103 264 6.7E-43 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PP4_RS08795 f7e98c47109dc65e971899142c009f9b 276 PANTHER PTHR22769:SF7 99 246 1.4E-58 T 22-04-2016 PP4_RS08795 f7e98c47109dc65e971899142c009f9b 276 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 107 138 1.6E-10 T 22-04-2016 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381 PP4_RS08795 f7e98c47109dc65e971899142c009f9b 276 PANTHER PTHR22769 99 246 1.4E-58 T 22-04-2016 PP4_RS08795 f7e98c47109dc65e971899142c009f9b 276 Hamap MF_00297 NADH pyrophosphatase [nudC]. 6 271 49.347 T 22-04-2016 IPR022925 NADH pyrophosphatase NudC GO:0000210 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381 PP4_RS08795 f7e98c47109dc65e971899142c009f9b 276 Pfam PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain 29 105 2.1E-9 T 22-04-2016 IPR015375 NADH pyrophosphatase-like, N-terminal GO:0016787 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381 PP4_RS08795 f7e98c47109dc65e971899142c009f9b 276 Pfam PF00293 NUDIX domain 144 253 4.1E-19 T 22-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 PP4_RS10590 7bdf2d74b1cb0da971e83884081dd61e 355 ProSitePatterns PS00570 Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 47 69 - T 22-04-2016 IPR015881 Aromatic-ring-hydroxylating dioxygenase, 2Fe-2S-binding site GO:0005506|GO:0016705|GO:0051537|GO:0055114 PP4_RS10590 7bdf2d74b1cb0da971e83884081dd61e 355 PANTHER PTHR21266:SF19 4 344 1.7E-121 T 22-04-2016 PP4_RS10590 7bdf2d74b1cb0da971e83884081dd61e 355 SUPERFAMILY SSF55961 116 343 1.04E-58 T 22-04-2016 PP4_RS10590 7bdf2d74b1cb0da971e83884081dd61e 355 Pfam PF00355 Rieske [2Fe-2S] domain 6 86 2.9E-17 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 PP4_RS10590 7bdf2d74b1cb0da971e83884081dd61e 355 Gene3D G3DSA:2.102.10.10 5 118 2.6E-28 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 PP4_RS10590 7bdf2d74b1cb0da971e83884081dd61e 355 SUPERFAMILY SSF50022 3 117 2.36E-29 T 22-04-2016 IPR017941 Rieske [2Fe-2S] iron-sulphur domain GO:0016491|GO:0051537|GO:0055114 PP4_RS10590 7bdf2d74b1cb0da971e83884081dd61e 355 PANTHER PTHR21266 4 344 1.7E-121 T 22-04-2016 PP4_RS01235 68865dbcfb3db15d063e49775c19628c 463 PANTHER PTHR30011 1 450 8.0E-231 T 22-04-2016 PP4_RS01235 68865dbcfb3db15d063e49775c19628c 463 TIGRFAM TIGR03860 FMN_nitrolo: FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family 7 430 6.8E-166 T 22-04-2016 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 PP4_RS01235 68865dbcfb3db15d063e49775c19628c 463 Gene3D G3DSA:3.20.20.30 2 315 8.9E-137 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS01235 68865dbcfb3db15d063e49775c19628c 463 Gene3D G3DSA:3.20.20.30 348 433 8.9E-137 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS01235 68865dbcfb3db15d063e49775c19628c 463 Pfam PF00296 Luciferase-like monooxygenase 26 388 6.5E-63 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS01235 68865dbcfb3db15d063e49775c19628c 463 PIRSF PIRSF000337 2 443 1.2E-139 T 22-04-2016 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A GO:0004497 PP4_RS01235 68865dbcfb3db15d063e49775c19628c 463 SUPERFAMILY SSF51679 1 433 3.79E-129 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS01235 68865dbcfb3db15d063e49775c19628c 463 PANTHER PTHR30011:SF16 1 450 8.0E-231 T 22-04-2016 PP4_RS17820 4cb015e48817f1ee30861a0573dff65c 179 SUPERFAMILY SSF53254 5 172 1.76E-26 T 22-04-2016 IPR029033 Histidine phosphatase superfamily PP4_RS17820 4cb015e48817f1ee30861a0573dff65c 179 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 44 172 1.7E-20 T 22-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 PP4_RS17820 4cb015e48817f1ee30861a0573dff65c 179 Gene3D G3DSA:3.40.50.1240 39 171 1.6E-20 T 22-04-2016 IPR029033 Histidine phosphatase superfamily PP4_RS17820 4cb015e48817f1ee30861a0573dff65c 179 SMART SM00855 5 143 2.1E-4 T 22-04-2016 IPR013078 Histidine phosphatase superfamily, clade-1 PP4_RS13545 b6139cf8dbc808863744637a5204ef40 261 PANTHER PTHR24322 169 200 2.0E-45 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13545 b6139cf8dbc808863744637a5204ef40 261 PANTHER PTHR24322 21 153 2.0E-45 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13545 b6139cf8dbc808863744637a5204ef40 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 96 107 2.2E-12 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13545 b6139cf8dbc808863744637a5204ef40 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 157 2.2E-12 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13545 b6139cf8dbc808863744637a5204ef40 261 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 188 2.2E-12 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13545 b6139cf8dbc808863744637a5204ef40 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 96 107 3.8E-33 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13545 b6139cf8dbc808863744637a5204ef40 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 169 188 3.8E-33 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13545 b6139cf8dbc808863744637a5204ef40 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 190 207 3.8E-33 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13545 b6139cf8dbc808863744637a5204ef40 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 143 159 3.8E-33 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13545 b6139cf8dbc808863744637a5204ef40 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 19 36 3.8E-33 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13545 b6139cf8dbc808863744637a5204ef40 261 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 224 244 3.8E-33 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS13545 b6139cf8dbc808863744637a5204ef40 261 SUPERFAMILY SSF51735 13 257 3.1E-64 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS13545 b6139cf8dbc808863744637a5204ef40 261 Gene3D G3DSA:3.40.50.720 12 258 8.0E-69 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS13545 b6139cf8dbc808863744637a5204ef40 261 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 24 256 6.3E-57 T 22-04-2016 PP4_RS23365 aa47b2cefd7305868c9950ed8fa4d846 365 Pfam PF01266 FAD dependent oxidoreductase 5 345 2.3E-63 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PP4_RS23365 aa47b2cefd7305868c9950ed8fa4d846 365 PANTHER PTHR13847 4 360 1.4E-93 T 22-04-2016 PP4_RS23365 aa47b2cefd7305868c9950ed8fa4d846 365 Gene3D G3DSA:3.30.9.10 206 304 1.1E-17 T 22-04-2016 PP4_RS23365 aa47b2cefd7305868c9950ed8fa4d846 365 PANTHER PTHR13847:SF180 4 360 1.4E-93 T 22-04-2016 PP4_RS23365 aa47b2cefd7305868c9950ed8fa4d846 365 Gene3D G3DSA:3.50.50.60 3 82 3.4E-55 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS23365 aa47b2cefd7305868c9950ed8fa4d846 365 Gene3D G3DSA:3.50.50.60 306 361 3.4E-55 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS23365 aa47b2cefd7305868c9950ed8fa4d846 365 Gene3D G3DSA:3.50.50.60 136 205 3.4E-55 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS23365 aa47b2cefd7305868c9950ed8fa4d846 365 TIGRFAM TIGR02352 thiamin_ThiO: glycine oxidase ThiO 5 348 3.7E-77 T 22-04-2016 IPR012727 Glycine oxidase ThiO GO:0016491|GO:0050660 UniPathway: UPA00060 PP4_RS23365 aa47b2cefd7305868c9950ed8fa4d846 365 SUPERFAMILY SSF51905 3 219 9.06E-48 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS23365 aa47b2cefd7305868c9950ed8fa4d846 365 SUPERFAMILY SSF51905 306 361 9.06E-48 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS23365 aa47b2cefd7305868c9950ed8fa4d846 365 SUPERFAMILY SSF54373 219 306 4.05E-21 T 22-04-2016 PP4_RS11350 d9f6069c69f2e3a8dc75db9c96339464 341 SUPERFAMILY SSF89733 11 339 1.31E-103 T 22-04-2016 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS11350 d9f6069c69f2e3a8dc75db9c96339464 341 Pfam PF02615 Malate/L-lactate dehydrogenase 14 336 1.2E-106 T 22-04-2016 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS11350 d9f6069c69f2e3a8dc75db9c96339464 341 Gene3D G3DSA:1.10.1530.10 11 80 1.5E-22 T 22-04-2016 PP4_RS11350 d9f6069c69f2e3a8dc75db9c96339464 341 PANTHER PTHR11091 10 339 2.4E-79 T 22-04-2016 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS11350 d9f6069c69f2e3a8dc75db9c96339464 341 Gene3D G3DSA:3.30.1370.60 81 282 8.2E-80 T 22-04-2016 PP4_RS00965 782e3b7d92ffe4c37b57a5b558efbb54 412 Pfam PF07219 HemY protein N-terminus 27 133 5.0E-27 T 22-04-2016 IPR010817 HemY, N-terminal UniPathway: UPA00252 PP4_RS00965 782e3b7d92ffe4c37b57a5b558efbb54 412 Gene3D G3DSA:1.25.40.10 330 394 7.9E-10 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS00965 782e3b7d92ffe4c37b57a5b558efbb54 412 Gene3D G3DSA:1.25.40.10 89 209 4.9E-10 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS00965 782e3b7d92ffe4c37b57a5b558efbb54 412 Gene3D G3DSA:1.25.40.10 248 298 7.9E-10 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS00965 782e3b7d92ffe4c37b57a5b558efbb54 412 SUPERFAMILY SSF48452 89 209 7.59E-11 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS00965 782e3b7d92ffe4c37b57a5b558efbb54 412 TIGRFAM TIGR00540 TPR_hemY_coli: heme biosynthesis-associated TPR protein 5 392 1.2E-121 T 22-04-2016 IPR005254 Heme biosynthesis-associated TPR protein GO:0016020|GO:0042168 UniPathway: UPA00252 PP4_RS00965 782e3b7d92ffe4c37b57a5b558efbb54 412 SUPERFAMILY SSF48452 258 396 2.15E-7 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS23165 3c8058da73bebfbc78e132e9181e1b1f 165 Gene3D G3DSA:3.10.50.30 86 162 2.3E-22 T 22-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 PP4_RS23165 3c8058da73bebfbc78e132e9181e1b1f 165 SUPERFAMILY SSF54534 89 161 5.49E-18 T 22-04-2016 PP4_RS23165 3c8058da73bebfbc78e132e9181e1b1f 165 PANTHER PTHR30437 21 165 1.5E-20 T 22-04-2016 PP4_RS23165 3c8058da73bebfbc78e132e9181e1b1f 165 PIRSF PIRSF006092 6 165 2.2E-33 T 22-04-2016 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 PP4_RS23165 3c8058da73bebfbc78e132e9181e1b1f 165 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 90 162 1.2E-20 T 22-04-2016 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 PP4_RS08570 19c495315bfcac0c9abdd756cd2d01f5 448 PANTHER PTHR34596 1 445 6.8E-140 T 22-04-2016 PP4_RS08570 19c495315bfcac0c9abdd756cd2d01f5 448 Gene3D G3DSA:2.40.160.10 34 444 3.5E-126 T 22-04-2016 IPR023614 Porin domain PP4_RS08570 19c495315bfcac0c9abdd756cd2d01f5 448 Pfam PF03573 outer membrane porin, OprD family 30 443 1.1E-133 T 22-04-2016 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 PP4_RS16085 815358a37d1ef53eb6e5a77f438507fa 541 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 341 539 3.9E-45 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS16085 815358a37d1ef53eb6e5a77f438507fa 541 Gene3D G3DSA:1.10.287.950 293 508 3.8E-54 T 22-04-2016 PP4_RS16085 815358a37d1ef53eb6e5a77f438507fa 541 SUPERFAMILY SSF58104 232 541 1.96E-71 T 22-04-2016 PP4_RS16085 815358a37d1ef53eb6e5a77f438507fa 541 SMART SM00304 212 264 1.5E-10 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS16085 815358a37d1ef53eb6e5a77f438507fa 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 406 435 4.2E-25 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS16085 815358a37d1ef53eb6e5a77f438507fa 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 5 30 4.2E-25 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS16085 815358a37d1ef53eb6e5a77f438507fa 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 300 329 4.2E-25 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS16085 815358a37d1ef53eb6e5a77f438507fa 541 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 377 404 4.2E-25 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS16085 815358a37d1ef53eb6e5a77f438507fa 541 PANTHER PTHR32089 154 541 6.2E-114 T 22-04-2016 PP4_RS16085 815358a37d1ef53eb6e5a77f438507fa 541 Pfam PF00672 HAMP domain 193 258 1.5E-14 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS16085 815358a37d1ef53eb6e5a77f438507fa 541 SMART SM00283 279 540 4.2E-70 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS12070 c846dd38d4ab3feb8bcacf0978e38e94 621 SMART SM00965 210 261 1.3E-5 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS12070 c846dd38d4ab3feb8bcacf0978e38e94 621 Pfam PF07660 Secretin and TonB N terminus short domain 210 260 5.3E-7 T 22-04-2016 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 PP4_RS12070 c846dd38d4ab3feb8bcacf0978e38e94 621 Pfam PF00263 Bacterial type II and III secretion system protein 396 561 2.9E-41 T 22-04-2016 IPR004846 Type II/III secretion system GO:0009306 PP4_RS12070 c846dd38d4ab3feb8bcacf0978e38e94 621 PANTHER PTHR30332 186 561 3.3E-75 T 22-04-2016 PP4_RS12070 c846dd38d4ab3feb8bcacf0978e38e94 621 PRINTS PR00811 Bacterial general secretion pathway protein D signature 548 562 3.4E-10 T 22-04-2016 IPR001775 GspD/PilQ family PP4_RS12070 c846dd38d4ab3feb8bcacf0978e38e94 621 PRINTS PR00811 Bacterial general secretion pathway protein D signature 334 344 3.4E-10 T 22-04-2016 IPR001775 GspD/PilQ family PP4_RS12070 c846dd38d4ab3feb8bcacf0978e38e94 621 PRINTS PR00811 Bacterial general secretion pathway protein D signature 425 435 3.4E-10 T 22-04-2016 IPR001775 GspD/PilQ family PP4_RS12070 c846dd38d4ab3feb8bcacf0978e38e94 621 PRINTS PR00811 Bacterial general secretion pathway protein D signature 525 543 3.4E-10 T 22-04-2016 IPR001775 GspD/PilQ family PP4_RS12070 c846dd38d4ab3feb8bcacf0978e38e94 621 PRINTS PR01032 Gene IV protein signature 541 563 7.2E-8 T 22-04-2016 PP4_RS12070 c846dd38d4ab3feb8bcacf0978e38e94 621 PRINTS PR01032 Gene IV protein signature 488 516 7.2E-8 T 22-04-2016 PP4_RS12070 c846dd38d4ab3feb8bcacf0978e38e94 621 PRINTS PR01032 Gene IV protein signature 415 438 7.2E-8 T 22-04-2016 PP4_RS12070 c846dd38d4ab3feb8bcacf0978e38e94 621 Pfam PF03958 Bacterial type II/III secretion system short domain 274 331 2.3E-7 T 22-04-2016 IPR005644 NolW-like PP4_RS12070 c846dd38d4ab3feb8bcacf0978e38e94 621 Gene3D G3DSA:1.25.40.10 33 168 2.8E-9 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS12070 c846dd38d4ab3feb8bcacf0978e38e94 621 SUPERFAMILY SSF48452 35 163 5.82E-9 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS12070 c846dd38d4ab3feb8bcacf0978e38e94 621 PANTHER PTHR30332:SF7 186 561 3.3E-75 T 22-04-2016 PP4_RS12895 3c1e12327bef7ea14516818ace859c6e 70 ProSitePatterns PS00352 'Cold-shock' domain signature. 18 37 - T 22-04-2016 IPR019844 Cold-shock conserved site PP4_RS12895 3c1e12327bef7ea14516818ace859c6e 70 Gene3D G3DSA:2.40.50.140 5 68 1.4E-30 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS12895 3c1e12327bef7ea14516818ace859c6e 70 Pfam PF00313 'Cold-shock' DNA-binding domain 6 68 2.4E-29 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PP4_RS12895 3c1e12327bef7ea14516818ace859c6e 70 PANTHER PTHR11544 1 69 8.0E-36 T 22-04-2016 PP4_RS12895 3c1e12327bef7ea14516818ace859c6e 70 SUPERFAMILY SSF50249 3 68 1.37E-25 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS12895 3c1e12327bef7ea14516818ace859c6e 70 SMART SM00357 6 70 9.9E-28 T 22-04-2016 IPR011129 Cold shock protein GO:0003676 PP4_RS12895 3c1e12327bef7ea14516818ace859c6e 70 PRINTS PR00050 Cold shock protein signature 28 37 1.2E-16 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PP4_RS12895 3c1e12327bef7ea14516818ace859c6e 70 PRINTS PR00050 Cold shock protein signature 43 61 1.2E-16 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PP4_RS12895 3c1e12327bef7ea14516818ace859c6e 70 PRINTS PR00050 Cold shock protein signature 7 22 1.2E-16 T 22-04-2016 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 PP4_RS12895 3c1e12327bef7ea14516818ace859c6e 70 PIRSF PIRSF002599 1 70 4.3E-24 T 22-04-2016 IPR012156 Cold shock, CspA GO:0003676 PP4_RS24040 2608b0fd5a50fa66bb6852eed10902a2 147 Pfam PF07883 Cupin domain 51 116 3.6E-10 T 22-04-2016 IPR013096 Cupin 2, conserved barrel PP4_RS24040 2608b0fd5a50fa66bb6852eed10902a2 147 Gene3D G3DSA:2.60.120.10 19 136 7.4E-29 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS24040 2608b0fd5a50fa66bb6852eed10902a2 147 SUPERFAMILY SSF51182 17 136 3.42E-27 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS24040 2608b0fd5a50fa66bb6852eed10902a2 147 PANTHER PTHR33570:SF5 8 136 2.1E-49 T 22-04-2016 PP4_RS24040 2608b0fd5a50fa66bb6852eed10902a2 147 PANTHER PTHR33570 8 136 2.1E-49 T 22-04-2016 PP4_RS25205 05ae9b70f3d479aadb8cd69061636206 201 Gene3D G3DSA:1.10.510.10 115 184 9.3E-8 T 22-04-2016 PP4_RS25205 05ae9b70f3d479aadb8cd69061636206 201 SUPERFAMILY SSF56112 22 174 1.44E-13 T 22-04-2016 IPR011009 Protein kinase-like domain PP4_RS21915 295b281e91d84504da10a1607a5df29d 174 SUPERFAMILY SSF56784 10 172 1.06E-41 T 22-04-2016 IPR023214 HAD-like domain PP4_RS21915 295b281e91d84504da10a1607a5df29d 174 Pfam PF08282 haloacid dehalogenase-like hydrolase 87 150 8.9E-7 T 22-04-2016 IPR023214 HAD-like domain PP4_RS21915 295b281e91d84504da10a1607a5df29d 174 PANTHER PTHR21485 1 167 6.2E-58 T 22-04-2016 PP4_RS21915 295b281e91d84504da10a1607a5df29d 174 Gene3D G3DSA:3.40.50.1000 3 173 2.1E-47 T 22-04-2016 IPR023214 HAD-like domain PP4_RS21915 295b281e91d84504da10a1607a5df29d 174 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 12 164 6.0E-50 T 22-04-2016 IPR010023 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase GO:0019143 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 PP4_RS21915 295b281e91d84504da10a1607a5df29d 174 PIRSF PIRSF006118 1 174 2.9E-72 T 22-04-2016 IPR010023 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase GO:0019143 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 PP4_RS03890 107e5212c8c1f2608b33229b801267b0 135 PANTHER PTHR26402 8 126 4.2E-29 T 22-04-2016 PP4_RS03890 107e5212c8c1f2608b33229b801267b0 135 SMART SM00448 8 122 5.7E-27 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS03890 107e5212c8c1f2608b33229b801267b0 135 Pfam PF00072 Response regulator receiver domain 10 122 8.3E-23 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS03890 107e5212c8c1f2608b33229b801267b0 135 SUPERFAMILY SSF52172 7 128 1.05E-32 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS03890 107e5212c8c1f2608b33229b801267b0 135 Gene3D G3DSA:3.40.50.2300 6 126 4.8E-31 T 22-04-2016 PP4_RS10165 120759670f0e1d2da95ab5eab52acce4 350 Pfam PF07759 Protein of unknown function (DUF1615) 36 350 2.8E-142 T 22-04-2016 IPR011673 Protein of unknown function DUF1615 PP4_RS10165 120759670f0e1d2da95ab5eab52acce4 350 ProDom PD041438 LIPOPROTEIN YAIW PRECURSOR SIGNAL MEMBRANE OUTER LIPOPROTEIN ECS0428 XAC0592 SECRETED 2 350 0.0 T 22-04-2016 IPR011673 Protein of unknown function DUF1615 PP4_RS16185 0edf8540a432af02aebf6948d2503e9e 250 PANTHER PTHR12128:SF34 1 245 1.7E-62 T 22-04-2016 PP4_RS16185 0edf8540a432af02aebf6948d2503e9e 250 PANTHER PTHR12128 1 245 1.7E-62 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS16185 0edf8540a432af02aebf6948d2503e9e 250 SUPERFAMILY SSF51569 1 244 1.67E-64 T 22-04-2016 PP4_RS16185 0edf8540a432af02aebf6948d2503e9e 250 Gene3D G3DSA:3.20.20.70 1 245 2.3E-68 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS16185 0edf8540a432af02aebf6948d2503e9e 250 SMART SM01130 1 248 3.1E-55 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS16185 0edf8540a432af02aebf6948d2503e9e 250 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 94 124 - T 22-04-2016 IPR020625 Schiff base-forming aldolase, active site GO:0008152|GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|UniPathway: UPA00034 PP4_RS16185 0edf8540a432af02aebf6948d2503e9e 250 Pfam PF00701 Dihydrodipicolinate synthetase family 1 244 5.3E-46 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS10815 236c10c042616d512c3521bca551a54a 321 SUPERFAMILY SSF103481 54 153 2.75E-10 T 22-04-2016 PP4_RS10815 236c10c042616d512c3521bca551a54a 321 PANTHER PTHR12715 9 299 1.9E-67 T 22-04-2016 PP4_RS10815 236c10c042616d512c3521bca551a54a 321 PANTHER PTHR12715:SF5 9 299 1.9E-67 T 22-04-2016 PP4_RS10815 236c10c042616d512c3521bca551a54a 321 SUPERFAMILY SSF103481 208 302 2.48E-13 T 22-04-2016 PP4_RS10815 236c10c042616d512c3521bca551a54a 321 Pfam PF00892 EamA-like transporter family 14 149 3.7E-14 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS10815 236c10c042616d512c3521bca551a54a 321 Pfam PF00892 EamA-like transporter family 166 298 1.8E-14 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS11050 834aa47978531c01c22a2af2cade8b63 493 Pfam PF00171 Aldehyde dehydrogenase family 14 477 5.1E-175 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PP4_RS11050 834aa47978531c01c22a2af2cade8b63 493 SUPERFAMILY SSF53720 3 480 2.75E-171 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS11050 834aa47978531c01c22a2af2cade8b63 493 Gene3D G3DSA:3.40.605.10 5 265 1.2E-99 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS11050 834aa47978531c01c22a2af2cade8b63 493 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 251 258 - T 22-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 PP4_RS11050 834aa47978531c01c22a2af2cade8b63 493 Gene3D G3DSA:3.40.309.10 266 442 9.6E-71 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PP4_RS11050 834aa47978531c01c22a2af2cade8b63 493 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 279 290 - T 22-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 PP4_RS11050 834aa47978531c01c22a2af2cade8b63 493 PANTHER PTHR11699 5 488 1.2E-237 T 22-04-2016 PP4_RS23370 72fec0b992610963d5a0b8c0b8a09622 129 Gene3D G3DSA:3.30.700.10 6 63 2.2E-13 T 22-04-2016 PP4_RS23370 72fec0b992610963d5a0b8c0b8a09622 129 PANTHER PTHR30093 2 62 3.7E-12 T 22-04-2016 PP4_RS23370 72fec0b992610963d5a0b8c0b8a09622 129 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 2 25 3.9E-8 T 22-04-2016 IPR012902 Prokaryotic N-terminal methylation site PP4_RS23370 72fec0b992610963d5a0b8c0b8a09622 129 SUPERFAMILY SSF54523 6 114 2.28E-18 T 22-04-2016 PP4_RS23370 72fec0b992610963d5a0b8c0b8a09622 129 PANTHER PTHR30093:SF4 2 62 3.7E-12 T 22-04-2016 PP4_RS23370 72fec0b992610963d5a0b8c0b8a09622 129 Pfam PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor 26 106 9.9E-13 T 22-04-2016 IPR031982 Type IV minor pilin ComP PP4_RS23370 72fec0b992610963d5a0b8c0b8a09622 129 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 3 23 - T 22-04-2016 IPR012902 Prokaryotic N-terminal methylation site PP4_RS04490 eeb9466e5bdf2ff73b7733da7eb2ab5b 382 SUPERFAMILY SSF111369 60 273 1.7E-42 T 22-04-2016 PP4_RS04490 eeb9466e5bdf2ff73b7733da7eb2ab5b 382 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 71 269 3.0E-35 T 22-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PP4_RS04490 eeb9466e5bdf2ff73b7733da7eb2ab5b 382 PANTHER PTHR30469:SF11 1 305 1.9E-119 T 22-04-2016 PP4_RS04490 eeb9466e5bdf2ff73b7733da7eb2ab5b 382 PANTHER PTHR30469:SF11 321 377 1.9E-119 T 22-04-2016 PP4_RS04490 eeb9466e5bdf2ff73b7733da7eb2ab5b 382 PANTHER PTHR30469 1 305 1.9E-119 T 22-04-2016 PP4_RS04490 eeb9466e5bdf2ff73b7733da7eb2ab5b 382 PANTHER PTHR30469 321 377 1.9E-119 T 22-04-2016 PP4_RS04490 eeb9466e5bdf2ff73b7733da7eb2ab5b 382 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 45 366 8.5E-79 T 22-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 PP4_RS04490 eeb9466e5bdf2ff73b7733da7eb2ab5b 382 Gene3D G3DSA:2.40.50.100 70 102 3.4E-17 T 22-04-2016 PP4_RS04490 eeb9466e5bdf2ff73b7733da7eb2ab5b 382 Gene3D G3DSA:2.40.50.100 163 195 3.4E-17 T 22-04-2016 PP4_RS22065 18680ed56c56e0b743765a3dd795e004 313 Pfam PF03547 Membrane transport protein 13 137 2.4E-7 T 22-04-2016 IPR004776 Auxin efflux carrier GO:0016021|GO:0055085 PP4_RS22065 18680ed56c56e0b743765a3dd795e004 313 Pfam PF03547 Membrane transport protein 165 301 5.0E-11 T 22-04-2016 IPR004776 Auxin efflux carrier GO:0016021|GO:0055085 PP4_RS22065 18680ed56c56e0b743765a3dd795e004 313 PANTHER PTHR31752:SF13 93 309 4.6E-47 T 22-04-2016 PP4_RS22065 18680ed56c56e0b743765a3dd795e004 313 PANTHER PTHR31752 93 309 4.6E-47 T 22-04-2016 PP4_RS14525 3b505d79e2a8d3f0545b465c21d68270 365 PANTHER PTHR11482:SF38 2 365 4.9E-134 T 22-04-2016 PP4_RS14525 3b505d79e2a8d3f0545b465c21d68270 365 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 270 341 7.1E-8 T 22-04-2016 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Reactome: REACT_13 PP4_RS14525 3b505d79e2a8d3f0545b465c21d68270 365 Gene3D G3DSA:2.40.37.10 232 342 2.7E-18 T 22-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 PP4_RS14525 3b505d79e2a8d3f0545b465c21d68270 365 SUPERFAMILY SSF51419 10 239 8.5E-45 T 22-04-2016 IPR029066 PLP-binding barrel PP4_RS14525 3b505d79e2a8d3f0545b465c21d68270 365 Gene3D G3DSA:3.20.20.10 29 231 2.0E-17 T 22-04-2016 IPR029066 PLP-binding barrel PP4_RS14525 3b505d79e2a8d3f0545b465c21d68270 365 TIGRFAM TIGR01047 nspC: carboxynorspermidine decarboxylase 2 361 2.8E-123 T 22-04-2016 IPR005730 Carboxynorspermidine decarboxylase KEGG: 00330+4.1.1.96|MetaCyc: PWY-6562 PP4_RS14525 3b505d79e2a8d3f0545b465c21d68270 365 SUPERFAMILY SSF50621 207 354 1.0E-28 T 22-04-2016 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Reactome: REACT_13 PP4_RS14525 3b505d79e2a8d3f0545b465c21d68270 365 PANTHER PTHR11482 2 365 4.9E-134 T 22-04-2016 PP4_RS14525 3b505d79e2a8d3f0545b465c21d68270 365 PIRSF PIRSF038941 1 365 6.5E-141 T 22-04-2016 IPR005730 Carboxynorspermidine decarboxylase KEGG: 00330+4.1.1.96|MetaCyc: PWY-6562 PP4_RS14405 63b3e571382e78da76be3ac13b7a4c61 159 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 12 130 5.8E-9 T 22-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain PP4_RS14405 63b3e571382e78da76be3ac13b7a4c61 159 PANTHER PTHR34109:SF1 6 146 2.4E-42 T 22-04-2016 PP4_RS14405 63b3e571382e78da76be3ac13b7a4c61 159 Gene3D G3DSA:3.10.180.10 11 135 4.2E-28 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PP4_RS14405 63b3e571382e78da76be3ac13b7a4c61 159 PANTHER PTHR34109 6 146 2.4E-42 T 22-04-2016 PP4_RS14405 63b3e571382e78da76be3ac13b7a4c61 159 SUPERFAMILY SSF54593 12 149 8.86E-32 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PP4_RS11415 92e20d6371d28cbe45e878d9f5943b6f 170 Gene3D G3DSA:1.10.10.10 109 164 1.2E-9 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS11415 92e20d6371d28cbe45e878d9f5943b6f 170 PANTHER PTHR30173 15 164 4.7E-34 T 22-04-2016 PP4_RS11415 92e20d6371d28cbe45e878d9f5943b6f 170 Gene3D G3DSA:1.10.1740.10 12 81 4.2E-12 T 22-04-2016 PP4_RS11415 92e20d6371d28cbe45e878d9f5943b6f 170 Pfam PF04542 Sigma-70 region 2 15 81 1.2E-11 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS11415 92e20d6371d28cbe45e878d9f5943b6f 170 SUPERFAMILY SSF88659 90 164 1.79E-11 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS11415 92e20d6371d28cbe45e878d9f5943b6f 170 SUPERFAMILY SSF88946 8 77 1.96E-14 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS11415 92e20d6371d28cbe45e878d9f5943b6f 170 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 15 164 1.3E-17 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS11415 92e20d6371d28cbe45e878d9f5943b6f 170 PANTHER PTHR30173:SF9 15 164 4.7E-34 T 22-04-2016 PP4_RS11415 92e20d6371d28cbe45e878d9f5943b6f 170 Pfam PF08281 Sigma-70, region 4 111 164 2.4E-12 T 22-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS12150 ccf80ff857ca7248b4f09d187deba5ab 107 Pfam PF08992 Quinohemoprotein amine dehydrogenase, gamma subunit 31 105 3.8E-44 T 22-04-2016 IPR015084 Quinohemoprotein amine dehydrogenase, gamma subunit, structural domain GO:0016638|GO:0055114 PP4_RS12150 ccf80ff857ca7248b4f09d187deba5ab 107 ProDom PD591508 QUINOHEMOPROTEIN AMINE SUBUNIT DEHYDROGENASE GAMMA 1.4.99.- CATALYTIC QH-AMDH CTQ 3D-STRUCTURE 37 107 2.0E-36 T 22-04-2016 IPR015084 Quinohemoprotein amine dehydrogenase, gamma subunit, structural domain GO:0016638|GO:0055114 PP4_RS12150 ccf80ff857ca7248b4f09d187deba5ab 107 SUPERFAMILY SSF69131 29 107 1.06E-42 T 22-04-2016 IPR015084 Quinohemoprotein amine dehydrogenase, gamma subunit, structural domain GO:0016638|GO:0055114 PP4_RS12150 ccf80ff857ca7248b4f09d187deba5ab 107 Gene3D G3DSA:4.10.940.10 29 107 2.0E-47 T 22-04-2016 IPR015084 Quinohemoprotein amine dehydrogenase, gamma subunit, structural domain GO:0016638|GO:0055114 PP4_RS03630 83f8d6f3871e0b1f00da685b3b78f01d 374 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 303 309 - T 22-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 PP4_RS03630 83f8d6f3871e0b1f00da685b3b78f01d 374 PANTHER PTHR18895 81 374 2.2E-127 T 22-04-2016 PP4_RS03630 83f8d6f3871e0b1f00da685b3b78f01d 374 SUPERFAMILY SSF53335 202 349 2.43E-26 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS03630 83f8d6f3871e0b1f00da685b3b78f01d 374 PANTHER PTHR18895:SF6 81 374 2.2E-127 T 22-04-2016 PP4_RS03630 83f8d6f3871e0b1f00da685b3b78f01d 374 Pfam PF05175 Methyltransferase small domain 201 371 6.7E-52 T 22-04-2016 IPR007848 Methyltransferase small domain GO:0008168 PP4_RS03630 83f8d6f3871e0b1f00da685b3b78f01d 374 Gene3D G3DSA:3.40.50.150 220 345 7.2E-22 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS03630 83f8d6f3871e0b1f00da685b3b78f01d 374 Hamap MF_01859 Ribosomal RNA large subunit methyltransferase G [rlmG]. 1 374 44.556 T 22-04-2016 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PP4_RS03630 83f8d6f3871e0b1f00da685b3b78f01d 374 PIRSF PIRSF037565 1 374 1.6E-146 T 22-04-2016 IPR017237 rRNA (guanine-N2-)-methyltransferase, RsmD GO:0005737|GO:0008990|GO:0031167 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PP4_RS13930 9335046e4933b93e4ff80fb933d1a12e 331 Pfam PF00248 Aldo/keto reductase family 15 320 4.1E-73 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain PP4_RS13930 9335046e4933b93e4ff80fb933d1a12e 331 Gene3D G3DSA:3.20.20.100 9 326 6.4E-105 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain PP4_RS13930 9335046e4933b93e4ff80fb933d1a12e 331 PANTHER PTHR11732 1 322 9.3E-136 T 22-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta PP4_RS13930 9335046e4933b93e4ff80fb933d1a12e 331 PANTHER PTHR11732:SF255 1 322 9.3E-136 T 22-04-2016 PP4_RS13930 9335046e4933b93e4ff80fb933d1a12e 331 SUPERFAMILY SSF51430 1 326 3.4E-100 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain PP4_RS25145 11789373d3be7776feb4d52e9876b4b7 626 PANTHER PTHR30557:SF1 191 623 0.0 T 22-04-2016 PP4_RS25145 11789373d3be7776feb4d52e9876b4b7 626 PANTHER PTHR30557:SF1 22 98 0.0 T 22-04-2016 PP4_RS25145 11789373d3be7776feb4d52e9876b4b7 626 PANTHER PTHR30557:SF1 132 162 0.0 T 22-04-2016 PP4_RS25145 11789373d3be7776feb4d52e9876b4b7 626 PANTHER PTHR30557 191 623 0.0 T 22-04-2016 PP4_RS25145 11789373d3be7776feb4d52e9876b4b7 626 PANTHER PTHR30557 22 98 0.0 T 22-04-2016 PP4_RS25145 11789373d3be7776feb4d52e9876b4b7 626 PANTHER PTHR30557 132 162 0.0 T 22-04-2016 PP4_RS25145 11789373d3be7776feb4d52e9876b4b7 626 TIGRFAM TIGR00190 thiC: phosphomethylpyrimidine synthase 139 591 6.0E-218 T 22-04-2016 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 PP4_RS25145 11789373d3be7776feb4d52e9876b4b7 626 Pfam PF01964 Radical SAM ThiC family 141 589 5.1E-200 T 22-04-2016 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 PP4_RS25145 11789373d3be7776feb4d52e9876b4b7 626 Hamap MF_00089 Phosphomethylpyrimidine synthase [thiC]. 139 594 56.058 T 22-04-2016 IPR002817 Phosphomethylpyrimidine synthase GO:0009228|GO:0051536 KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 PP4_RS25145 11789373d3be7776feb4d52e9876b4b7 626 Pfam PF13667 ThiC-associated domain 23 100 2.3E-33 T 22-04-2016 IPR025747 ThiC-associated domain KEGG: 00730+4.1.99.17|MetaCyc: PWY-6890|UniPathway: UPA00060 PP4_RS10370 db5f9875c379c745a7f70e5bfacf47d4 132 SUPERFAMILY SSF143744 3 132 2.22E-37 T 22-04-2016 PP4_RS10370 db5f9875c379c745a7f70e5bfacf47d4 132 PANTHER PTHR34309 1 132 5.4E-60 T 22-04-2016 PP4_RS10370 db5f9875c379c745a7f70e5bfacf47d4 132 PANTHER PTHR34309:SF4 1 132 5.4E-60 T 22-04-2016 PP4_RS10370 db5f9875c379c745a7f70e5bfacf47d4 132 Pfam PF03928 Haem-degrading 11 129 4.4E-33 T 22-04-2016 IPR005624 Haem-degrading PP4_RS21805 199044b459efaffabfde2ccf6669ac15 142 PANTHER PTHR38767 2 142 1.2E-47 T 22-04-2016 PP4_RS21805 199044b459efaffabfde2ccf6669ac15 142 Gene3D G3DSA:3.40.50.10110 1 139 1.2E-44 T 22-04-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 PP4_RS21805 199044b459efaffabfde2ccf6669ac15 142 Pfam PF04364 DNA polymerase III chi subunit, HolC 1 135 4.3E-37 T 22-04-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 PP4_RS21805 199044b459efaffabfde2ccf6669ac15 142 SUPERFAMILY SSF102400 1 139 3.27E-42 T 22-04-2016 IPR007459 DNA polymerase III chi subunit, HolC GO:0003677|GO:0003887|GO:0006260 PP4_RS21445 0d867f703944de3b4afc620b0ced7a0e 199 SUPERFAMILY SSF55811 17 175 4.2E-31 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PP4_RS21445 0d867f703944de3b4afc620b0ced7a0e 199 Pfam PF00293 NUDIX domain 26 103 1.6E-9 T 22-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 PP4_RS21445 0d867f703944de3b4afc620b0ced7a0e 199 PANTHER PTHR12992 1 183 1.2E-50 T 22-04-2016 PP4_RS21445 0d867f703944de3b4afc620b0ced7a0e 199 Gene3D G3DSA:3.90.79.10 3 182 5.9E-37 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PP4_RS13095 d92891b527d60c11474a4e3d0a9ce30e 132 PRINTS PR00502 NUDIX hydrolase family signature 31 45 5.2E-9 T 22-04-2016 IPR020476 NUDIX hydrolase PP4_RS13095 d92891b527d60c11474a4e3d0a9ce30e 132 PRINTS PR00502 NUDIX hydrolase family signature 45 60 5.2E-9 T 22-04-2016 IPR020476 NUDIX hydrolase PP4_RS13095 d92891b527d60c11474a4e3d0a9ce30e 132 ProSitePatterns PS00893 Nudix box signature. 36 57 - T 22-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 PP4_RS13095 d92891b527d60c11474a4e3d0a9ce30e 132 Gene3D G3DSA:3.90.79.10 8 122 9.8E-25 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PP4_RS13095 d92891b527d60c11474a4e3d0a9ce30e 132 PANTHER PTHR22769 28 107 1.0E-18 T 22-04-2016 PP4_RS13095 d92891b527d60c11474a4e3d0a9ce30e 132 SUPERFAMILY SSF55811 7 120 1.18E-25 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PP4_RS13095 d92891b527d60c11474a4e3d0a9ce30e 132 Pfam PF00293 NUDIX domain 8 109 2.2E-21 T 22-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 PP4_RS05850 022d2c192fdac3bdc49baeef7354d0d9 139 SUPERFAMILY SSF54197 10 130 1.26E-33 T 22-04-2016 IPR011146 HIT-like domain GO:0003824 PP4_RS05850 022d2c192fdac3bdc49baeef7354d0d9 139 PANTHER PTHR23089:SF13 22 129 4.2E-17 T 22-04-2016 PP4_RS05850 022d2c192fdac3bdc49baeef7354d0d9 139 Pfam PF01230 HIT domain 8 97 6.1E-18 T 22-04-2016 IPR001310 Histidine triad (HIT) protein PP4_RS05850 022d2c192fdac3bdc49baeef7354d0d9 139 PIRSF PIRSF000714 1 138 1.5E-48 T 22-04-2016 IPR026026 Histidine triad hydrolase, Hint-type PP4_RS05850 022d2c192fdac3bdc49baeef7354d0d9 139 PANTHER PTHR23089 22 129 4.2E-17 T 22-04-2016 IPR001310 Histidine triad (HIT) protein PP4_RS05850 022d2c192fdac3bdc49baeef7354d0d9 139 Gene3D G3DSA:3.30.428.10 8 129 2.0E-34 T 22-04-2016 IPR011146 HIT-like domain GO:0003824 PP4_RS19785 866abcc3621c234649e48cc8c582e28e 377 PIRSF PIRSF015557 1 377 2.3E-170 T 22-04-2016 IPR016633 Uncharacterised conserved protein UCP015557 PP4_RS19785 866abcc3621c234649e48cc8c582e28e 377 TIGRFAM TIGR03837 efp_adjacent_2: conserved hypothetical protein, PP_1857 family 5 373 1.2E-162 T 22-04-2016 IPR016633 Uncharacterised conserved protein UCP015557 PP4_RS19785 866abcc3621c234649e48cc8c582e28e 377 Pfam PF10093 Uncharacterized protein conserved in bacteria (DUF2331) 5 373 7.8E-156 T 22-04-2016 IPR016633 Uncharacterised conserved protein UCP015557 PP4_RS05000 af32cc7c06c2b3c323dcd960617272c4 229 Pfam PF14622 Ribonuclease-III-like 21 140 4.5E-35 T 22-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 PP4_RS05000 af32cc7c06c2b3c323dcd960617272c4 229 Gene3D G3DSA:1.10.1520.10 5 141 1.3E-46 T 22-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 PP4_RS05000 af32cc7c06c2b3c323dcd960617272c4 229 SMART SM00358 155 223 2.1E-16 T 22-04-2016 IPR014720 Double-stranded RNA-binding domain PP4_RS05000 af32cc7c06c2b3c323dcd960617272c4 229 SUPERFAMILY SSF54768 108 226 4.71E-24 T 22-04-2016 PP4_RS05000 af32cc7c06c2b3c323dcd960617272c4 229 PANTHER PTHR11207 1 219 1.3E-85 T 22-04-2016 PP4_RS05000 af32cc7c06c2b3c323dcd960617272c4 229 ProSitePatterns PS00517 Ribonuclease III family signature. 37 45 - T 22-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 PP4_RS05000 af32cc7c06c2b3c323dcd960617272c4 229 Gene3D G3DSA:3.30.160.20 152 223 2.0E-21 T 22-04-2016 IPR014720 Double-stranded RNA-binding domain PP4_RS05000 af32cc7c06c2b3c323dcd960617272c4 229 Pfam PF00035 Double-stranded RNA binding motif 155 219 1.3E-8 T 22-04-2016 IPR014720 Double-stranded RNA-binding domain PP4_RS05000 af32cc7c06c2b3c323dcd960617272c4 229 SMART SM00535 20 148 2.5E-52 T 22-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 PP4_RS05000 af32cc7c06c2b3c323dcd960617272c4 229 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 8 220 1.2E-69 T 22-04-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 PP4_RS05000 af32cc7c06c2b3c323dcd960617272c4 229 SUPERFAMILY SSF69065 2 157 1.12E-49 T 22-04-2016 IPR000999 Ribonuclease III domain GO:0003723|GO:0004525|GO:0006396 PP4_RS05000 af32cc7c06c2b3c323dcd960617272c4 229 Hamap MF_00104 Ribonuclease 3 [rnc]. 8 219 30.014 T 22-04-2016 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 PP4_RS23705 8881d32034d2935ff4f053fdd069530d 283 Pfam PF00809 Pterin binding enzyme 25 264 3.0E-81 T 22-04-2016 IPR000489 Pterin-binding domain GO:0042558 PP4_RS23705 8881d32034d2935ff4f053fdd069530d 283 SUPERFAMILY SSF51717 11 281 5.76E-105 T 22-04-2016 IPR011005 Dihydropteroate synthase-like GO:0044237 PP4_RS23705 8881d32034d2935ff4f053fdd069530d 283 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 58 71 - T 22-04-2016 IPR000489 Pterin-binding domain GO:0042558 PP4_RS23705 8881d32034d2935ff4f053fdd069530d 283 PANTHER PTHR20941:SF1 10 283 1.9E-117 T 22-04-2016 PP4_RS23705 8881d32034d2935ff4f053fdd069530d 283 Gene3D G3DSA:3.20.20.20 19 281 9.7E-107 T 22-04-2016 IPR000489 Pterin-binding domain GO:0042558 PP4_RS23705 8881d32034d2935ff4f053fdd069530d 283 ProSitePatterns PS00792 Dihydropteroate synthase signature 1. 24 39 - T 22-04-2016 IPR000489 Pterin-binding domain GO:0042558 PP4_RS23705 8881d32034d2935ff4f053fdd069530d 283 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 24 278 1.9E-99 T 22-04-2016 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614|UniPathway: UPA00077 PP4_RS23705 8881d32034d2935ff4f053fdd069530d 283 PANTHER PTHR20941 10 283 1.9E-117 T 22-04-2016 PP4_RS24435 dedce00d9ce45d2739b7d334dbdf5758 468 Pfam PF05488 PAAR motif 16 84 4.4E-9 T 22-04-2016 IPR008727 PAAR motif PP4_RS01350 afe7794e864d4bd7a2e2a37bbd3bb07b 774 SMART SM00732 323 422 3.5E-37 T 22-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 PP4_RS01350 afe7794e864d4bd7a2e2a37bbd3bb07b 774 Gene3D G3DSA:1.10.10.650 2 108 2.5E-47 T 22-04-2016 IPR023319 Tex-like protein, HTH domain PP4_RS01350 afe7794e864d4bd7a2e2a37bbd3bb07b 774 SUPERFAMILY SSF158832 3 318 2.35E-118 T 22-04-2016 PP4_RS01350 afe7794e864d4bd7a2e2a37bbd3bb07b 774 Gene3D G3DSA:2.40.50.140 631 718 8.6E-29 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS01350 afe7794e864d4bd7a2e2a37bbd3bb07b 774 Pfam PF12836 Helix-hairpin-helix motif 489 553 5.3E-28 T 22-04-2016 PP4_RS01350 afe7794e864d4bd7a2e2a37bbd3bb07b 774 SUPERFAMILY SSF53098 319 467 3.64E-53 T 22-04-2016 IPR012337 Ribonuclease H-like domain GO:0003676 PP4_RS01350 afe7794e864d4bd7a2e2a37bbd3bb07b 774 Pfam PF09371 Tex-like protein N-terminal domain 8 191 1.4E-67 T 22-04-2016 IPR018974 Tex-like protein, N-terminal PP4_RS01350 afe7794e864d4bd7a2e2a37bbd3bb07b 774 SMART SM00316 647 718 4.9E-25 T 22-04-2016 IPR022967 RNA-binding domain, S1 PP4_RS01350 afe7794e864d4bd7a2e2a37bbd3bb07b 774 Gene3D G3DSA:1.10.150.310 497 628 1.2E-45 T 22-04-2016 IPR023097 Tex RuvX-like domain PP4_RS01350 afe7794e864d4bd7a2e2a37bbd3bb07b 774 PANTHER PTHR10724:SF1 1 746 0.0 T 22-04-2016 PP4_RS01350 afe7794e864d4bd7a2e2a37bbd3bb07b 774 SUPERFAMILY SSF47781 558 630 1.93E-20 T 22-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 PP4_RS01350 afe7794e864d4bd7a2e2a37bbd3bb07b 774 Pfam PF00575 S1 RNA binding domain 647 718 3.4E-19 T 22-04-2016 IPR003029 S1 domain GO:0003676 PP4_RS01350 afe7794e864d4bd7a2e2a37bbd3bb07b 774 Gene3D G3DSA:1.10.3500.10 449 496 7.8E-99 T 22-04-2016 IPR023323 Tex-like domain PP4_RS01350 afe7794e864d4bd7a2e2a37bbd3bb07b 774 Gene3D G3DSA:1.10.3500.10 109 319 7.8E-99 T 22-04-2016 IPR023323 Tex-like domain PP4_RS01350 afe7794e864d4bd7a2e2a37bbd3bb07b 774 Gene3D G3DSA:3.30.420.140 324 448 3.1E-52 T 22-04-2016 IPR006641 YqgF/RNase H-like domain GO:0006139 PP4_RS01350 afe7794e864d4bd7a2e2a37bbd3bb07b 774 Pfam PF16921 Tex protein YqgF-like domain 324 449 1.6E-53 T 22-04-2016 IPR032639 Tex protein, YqgF-like domain PP4_RS01350 afe7794e864d4bd7a2e2a37bbd3bb07b 774 SUPERFAMILY SSF50249 635 721 3.51E-25 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS01350 afe7794e864d4bd7a2e2a37bbd3bb07b 774 PANTHER PTHR10724 1 746 0.0 T 22-04-2016 PP4_RS01350 afe7794e864d4bd7a2e2a37bbd3bb07b 774 SUPERFAMILY SSF47781 468 554 1.67E-26 T 22-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 PP4_RS22740 6c3791cf13a10ab2b6d86d83518681f4 332 Pfam PF05175 Methyltransferase small domain 162 328 5.2E-53 T 22-04-2016 IPR007848 Methyltransferase small domain GO:0008168 PP4_RS22740 6c3791cf13a10ab2b6d86d83518681f4 332 Hamap MF_01862 Ribosomal RNA small subunit methyltransferase C [rsmC]. 1 331 39.894 T 22-04-2016 IPR023543 rRNA small subunit methyltransferase C GO:0008649 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PP4_RS22740 6c3791cf13a10ab2b6d86d83518681f4 332 PANTHER PTHR18895:SF70 69 332 1.5E-87 T 22-04-2016 PP4_RS22740 6c3791cf13a10ab2b6d86d83518681f4 332 SUPERFAMILY SSF53335 97 303 2.13E-24 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS22740 6c3791cf13a10ab2b6d86d83518681f4 332 Pfam PF08468 Methyltransferase small domain N-terminal 5 150 6.1E-39 T 22-04-2016 IPR013675 Methyltransferase small, N-terminal GO:0006364|GO:0008990 KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825 PP4_RS22740 6c3791cf13a10ab2b6d86d83518681f4 332 PANTHER PTHR18895 69 332 1.5E-87 T 22-04-2016 PP4_RS22740 6c3791cf13a10ab2b6d86d83518681f4 332 Gene3D G3DSA:3.40.50.150 160 330 3.5E-20 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS22740 6c3791cf13a10ab2b6d86d83518681f4 332 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 260 266 - T 22-04-2016 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 PP4_RS01310 4897440b99a3dc242907bd1a1b1c9f48 321 SMART SM00062 30 253 1.1E-37 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS01310 4897440b99a3dc242907bd1a1b1c9f48 321 SUPERFAMILY SSF53850 30 311 1.45E-53 T 22-04-2016 PP4_RS01310 4897440b99a3dc242907bd1a1b1c9f48 321 TIGRFAM TIGR01728 SsuA_fam: ABC transporter, substrate-binding protein, aliphatic sulfonates family 31 312 2.8E-76 T 22-04-2016 IPR010067 Aliphatic sulfonates-binding protein GO:0006790|GO:0006810|GO:0016020 PP4_RS01310 4897440b99a3dc242907bd1a1b1c9f48 321 Pfam PF09084 NMT1/THI5 like 55 249 2.4E-17 T 22-04-2016 IPR015168 SsuA/THI5-like PP4_RS01310 4897440b99a3dc242907bd1a1b1c9f48 321 PANTHER PTHR30024:SF11 1 314 9.8E-144 T 22-04-2016 PP4_RS01310 4897440b99a3dc242907bd1a1b1c9f48 321 Gene3D G3DSA:3.40.190.10 113 234 6.6E-31 T 22-04-2016 PP4_RS01310 4897440b99a3dc242907bd1a1b1c9f48 321 PANTHER PTHR30024 1 314 9.8E-144 T 22-04-2016 PP4_RS05435 b8d68c7ad09f638561aff2b0d5cbf13a 330 SUPERFAMILY SSF103088 123 234 1.29E-24 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS05435 b8d68c7ad09f638561aff2b0d5cbf13a 330 PANTHER PTHR30128 41 239 8.5E-31 T 22-04-2016 PP4_RS05435 b8d68c7ad09f638561aff2b0d5cbf13a 330 PANTHER PTHR30128:SF11 41 239 8.5E-31 T 22-04-2016 PP4_RS05435 b8d68c7ad09f638561aff2b0d5cbf13a 330 Pfam PF00691 OmpA family 148 226 5.7E-13 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS05435 b8d68c7ad09f638561aff2b0d5cbf13a 330 Gene3D G3DSA:3.30.1330.60 109 232 8.3E-24 T 22-04-2016 IPR006665 OmpA-like domain PP4_RS02770 04d5f665fa3c1ae22164e377522a8d75 401 PANTHER PTHR23501:SF79 1 393 5.7E-112 T 22-04-2016 PP4_RS02770 04d5f665fa3c1ae22164e377522a8d75 401 Gene3D G3DSA:1.20.1250.20 219 388 1.0E-7 T 22-04-2016 PP4_RS02770 04d5f665fa3c1ae22164e377522a8d75 401 Gene3D G3DSA:1.20.1250.20 11 183 3.6E-24 T 22-04-2016 PP4_RS02770 04d5f665fa3c1ae22164e377522a8d75 401 Pfam PF07690 Major Facilitator Superfamily 11 318 5.3E-29 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS02770 04d5f665fa3c1ae22164e377522a8d75 401 SUPERFAMILY SSF103473 7 388 5.49E-46 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS02770 04d5f665fa3c1ae22164e377522a8d75 401 PANTHER PTHR23501 1 393 5.7E-112 T 22-04-2016 PP4_RS23900 4f235e7243d652c4b2a7323415dfb3fd 463 PANTHER PTHR11785 6 444 1.5E-219 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS23900 4f235e7243d652c4b2a7323415dfb3fd 463 PIRSF PIRSF006060 1 455 1.1E-74 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS23900 4f235e7243d652c4b2a7323415dfb3fd 463 ProSitePatterns PS00218 Amino acid permeases signature. 43 73 - T 22-04-2016 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 PP4_RS23900 4f235e7243d652c4b2a7323415dfb3fd 463 Pfam PF00324 Amino acid permease 18 429 2.6E-108 T 22-04-2016 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 PP4_RS23900 4f235e7243d652c4b2a7323415dfb3fd 463 PANTHER PTHR11785:SF24 6 444 1.5E-219 T 22-04-2016 PP4_RS21095 74f4e06c591bbb5ed914c7763ff4518c 271 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 30 58 - T 22-04-2016 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 PP4_RS21095 74f4e06c591bbb5ed914c7763ff4518c 271 PANTHER PTHR10953 1 162 9.7E-120 T 22-04-2016 PP4_RS21095 74f4e06c591bbb5ed914c7763ff4518c 271 PANTHER PTHR10953 195 268 9.7E-120 T 22-04-2016 PP4_RS21095 74f4e06c591bbb5ed914c7763ff4518c 271 PANTHER PTHR10953:SF159 1 162 9.7E-120 T 22-04-2016 PP4_RS21095 74f4e06c591bbb5ed914c7763ff4518c 271 PANTHER PTHR10953:SF159 195 268 9.7E-120 T 22-04-2016 PP4_RS21095 74f4e06c591bbb5ed914c7763ff4518c 271 Gene3D G3DSA:3.40.50.720 6 260 2.9E-54 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS21095 74f4e06c591bbb5ed914c7763ff4518c 271 SUPERFAMILY SSF69572 5 255 7.85E-64 T 22-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 PP4_RS21095 74f4e06c591bbb5ed914c7763ff4518c 271 Pfam PF00899 ThiF family 17 257 1.3E-40 T 22-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 PP4_RS09280 5383fef3568c75683a6371bea5394caa 239 Gene3D G3DSA:3.90.1680.10 1 228 1.1E-59 T 22-04-2016 IPR003738 SOS response associated peptidase (SRAP) KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PP4_RS09280 5383fef3568c75683a6371bea5394caa 239 Pfam PF02586 SOS response associated peptidase (SRAP) 1 217 3.0E-47 T 22-04-2016 IPR003738 SOS response associated peptidase (SRAP) KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PP4_RS09280 5383fef3568c75683a6371bea5394caa 239 SUPERFAMILY SSF143081 2 222 6.15E-60 T 22-04-2016 IPR003738 SOS response associated peptidase (SRAP) KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PP4_RS09280 5383fef3568c75683a6371bea5394caa 239 PANTHER PTHR13604 2 231 8.3E-50 T 22-04-2016 IPR003738 SOS response associated peptidase (SRAP) KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PP4_RS27140 26fa1ac4673421df4f1b21a8ac472ce4 556 SUPERFAMILY SSF161098 279 538 4.45E-37 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS27140 26fa1ac4673421df4f1b21a8ac472ce4 556 Gene3D G3DSA:1.10.3720.10 283 552 2.5E-52 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS27140 26fa1ac4673421df4f1b21a8ac472ce4 556 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 272 548 7.8E-75 T 22-04-2016 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 PP4_RS27140 26fa1ac4673421df4f1b21a8ac472ce4 556 PANTHER PTHR30425:SF7 196 554 1.2E-243 T 22-04-2016 PP4_RS27140 26fa1ac4673421df4f1b21a8ac472ce4 556 PANTHER PTHR30425 196 554 1.2E-243 T 22-04-2016 PP4_RS27140 26fa1ac4673421df4f1b21a8ac472ce4 556 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 324 550 3.8E-20 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS05275 9e3d3817ac5f847a8f5d638f0a84113a 200 PIRSF PIRSF006091 1 199 6.4E-42 T 22-04-2016 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 PP4_RS05275 9e3d3817ac5f847a8f5d638f0a84113a 200 SMART SM00900 98 186 1.1E-22 T 22-04-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 PP4_RS05275 9e3d3817ac5f847a8f5d638f0a84113a 200 Hamap MF_00479 Electron transport complex subunit RsxG [rsxG]. 1 188 21.003 T 22-04-2016 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 PP4_RS05275 9e3d3817ac5f847a8f5d638f0a84113a 200 TIGRFAM TIGR01947 rnfG: electron transport complex, RnfABCDGE type, G subunit 10 188 7.3E-52 T 22-04-2016 IPR010209 Electron transport complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 PP4_RS05275 9e3d3817ac5f847a8f5d638f0a84113a 200 PANTHER PTHR36118:SF1 1 193 5.5E-31 T 22-04-2016 PP4_RS05275 9e3d3817ac5f847a8f5d638f0a84113a 200 Pfam PF04205 FMN-binding domain 98 183 7.0E-14 T 22-04-2016 IPR007329 FMN-binding GO:0010181|GO:0016020 PP4_RS05275 9e3d3817ac5f847a8f5d638f0a84113a 200 PANTHER PTHR36118 1 193 5.5E-31 T 22-04-2016 PP4_RS06220 b28e3e601c49d1b02b7218d42223d944 442 Gene3D G3DSA:1.20.1250.20 250 432 5.4E-17 T 22-04-2016 PP4_RS06220 b28e3e601c49d1b02b7218d42223d944 442 Gene3D G3DSA:1.20.1250.20 26 203 5.0E-23 T 22-04-2016 PP4_RS06220 b28e3e601c49d1b02b7218d42223d944 442 PANTHER PTHR23511 5 437 5.0E-84 T 22-04-2016 PP4_RS06220 b28e3e601c49d1b02b7218d42223d944 442 SUPERFAMILY SSF103473 9 436 5.23E-72 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS06220 b28e3e601c49d1b02b7218d42223d944 442 Pfam PF00083 Sugar (and other) transporter 52 438 5.8E-52 T 22-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 PP4_RS12340 031bfc98a0b630911588590f60beb5cd 549 PANTHER PTHR23501 27 536 1.4E-17 T 22-04-2016 PP4_RS12340 031bfc98a0b630911588590f60beb5cd 549 SUPERFAMILY SSF103473 39 222 7.32E-18 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS12340 031bfc98a0b630911588590f60beb5cd 549 SUPERFAMILY SSF103473 503 527 7.32E-18 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS12340 031bfc98a0b630911588590f60beb5cd 549 SUPERFAMILY SSF103473 272 443 7.32E-18 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS12340 031bfc98a0b630911588590f60beb5cd 549 Gene3D G3DSA:1.20.1250.20 37 207 7.0E-8 T 22-04-2016 PP4_RS12340 031bfc98a0b630911588590f60beb5cd 549 Pfam PF07690 Major Facilitator Superfamily 40 434 5.9E-13 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS05895 bce8acd4cf26e011a68bce71995a8b45 205 Pfam PF14520 Helix-hairpin-helix domain 72 130 2.5E-17 T 22-04-2016 PP4_RS05895 bce8acd4cf26e011a68bce71995a8b45 205 Pfam PF01330 RuvA N terminal domain 2 62 2.6E-22 T 22-04-2016 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 PP4_RS05895 bce8acd4cf26e011a68bce71995a8b45 205 Gene3D G3DSA:2.40.50.140 2 65 3.8E-29 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS05895 bce8acd4cf26e011a68bce71995a8b45 205 Pfam PF07499 RuvA, C-terminal domain 158 202 7.8E-16 T 22-04-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 PP4_RS05895 bce8acd4cf26e011a68bce71995a8b45 205 SUPERFAMILY SSF47781 66 137 2.2E-22 T 22-04-2016 IPR010994 RuvA domain 2-like Reactome: REACT_216 PP4_RS05895 bce8acd4cf26e011a68bce71995a8b45 205 SUPERFAMILY SSF50249 2 63 6.85E-19 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS05895 bce8acd4cf26e011a68bce71995a8b45 205 Gene3D G3DSA:1.10.150.20 68 141 3.2E-30 T 22-04-2016 PP4_RS05895 bce8acd4cf26e011a68bce71995a8b45 205 PANTHER PTHR33796 2 205 1.5E-83 T 22-04-2016 PP4_RS05895 bce8acd4cf26e011a68bce71995a8b45 205 Gene3D G3DSA:1.10.8.10 156 202 1.7E-19 T 22-04-2016 PP4_RS05895 bce8acd4cf26e011a68bce71995a8b45 205 SMART SM00278 73 92 0.72 T 22-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 PP4_RS05895 bce8acd4cf26e011a68bce71995a8b45 205 SMART SM00278 108 127 0.022 T 22-04-2016 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 PP4_RS05895 bce8acd4cf26e011a68bce71995a8b45 205 SUPERFAMILY SSF46929 156 202 2.62E-9 T 22-04-2016 IPR011114 DNA helicase, Holliday junction RuvA type, domain III, C-terminal GO:0005524|GO:0006281|GO:0006310|GO:0009378|GO:0009379 PP4_RS05895 bce8acd4cf26e011a68bce71995a8b45 205 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 203 32.172 T 22-04-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 PP4_RS05895 bce8acd4cf26e011a68bce71995a8b45 205 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 202 9.0E-63 T 22-04-2016 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 PP4_RS02170 6dfdd0d5d45a407dc2fffccbc392859a 522 PANTHER PTHR30029 6 511 2.7E-230 T 22-04-2016 PP4_RS02170 6dfdd0d5d45a407dc2fffccbc392859a 522 Pfam PF04293 SpoVR like protein 16 447 2.2E-177 T 22-04-2016 IPR007390 Sporulation stage V, protein R PP4_RS02170 6dfdd0d5d45a407dc2fffccbc392859a 522 PANTHER PTHR30029:SF2 6 511 2.7E-230 T 22-04-2016 PP4_RS01710 954caa219addb23f41e8969308e2bc0e 176 SMART SM00989 107 175 0.0019 T 22-04-2016 IPR004096 4-vinyl reductase, 4VR PP4_RS01710 954caa219addb23f41e8969308e2bc0e 176 Gene3D G3DSA:3.30.1380.20 6 144 1.0E-20 T 22-04-2016 PP4_RS01710 954caa219addb23f41e8969308e2bc0e 176 SUPERFAMILY SSF111126 6 144 1.83E-16 T 22-04-2016 IPR024096 NO signalling/Golgi transport ligand-binding domain PP4_RS24965 24680b65f21f29a49b5c38de3da1b04b 521 PANTHER PTHR30193 11 265 7.3E-84 T 22-04-2016 PP4_RS24965 24680b65f21f29a49b5c38de3da1b04b 521 SUPERFAMILY SSF161098 280 512 6.54E-33 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS24965 24680b65f21f29a49b5c38de3da1b04b 521 Gene3D G3DSA:1.10.3720.10 316 511 3.5E-28 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS24965 24680b65f21f29a49b5c38de3da1b04b 521 Gene3D G3DSA:1.10.3720.10 23 259 1.0E-41 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS24965 24680b65f21f29a49b5c38de3da1b04b 521 SUPERFAMILY SSF161098 16 253 1.21E-44 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS24965 24680b65f21f29a49b5c38de3da1b04b 521 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 344 507 5.2E-13 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS24965 24680b65f21f29a49b5c38de3da1b04b 521 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 249 3.9E-18 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS24965 24680b65f21f29a49b5c38de3da1b04b 521 PANTHER PTHR30193:SF3 11 265 7.3E-84 T 22-04-2016 PP4_RS04640 8f7d652f940717ad507d2ae797537277 119 Pfam PF07238 PilZ domain 4 92 8.6E-7 T 22-04-2016 IPR009875 PilZ domain GO:0035438 PP4_RS18595 3a1ec65a6b31e0e9791fd1d83587741a 416 PANTHER PTHR30489:SF8 1 416 1.2E-120 T 22-04-2016 PP4_RS18595 3a1ec65a6b31e0e9791fd1d83587741a 416 TIGRFAM TIGR02212 lolCE: lipoprotein releasing system, transmembrane protein, LolC/E family 5 416 4.4E-172 T 22-04-2016 IPR011925 Lipoprotein-releasing system transmembrane protein LolC/E GO:0016021|GO:0042953|GO:0042954 PP4_RS18595 3a1ec65a6b31e0e9791fd1d83587741a 416 Gene3D G3DSA:1.10.3720.10 6 50 8.6E-6 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS18595 3a1ec65a6b31e0e9791fd1d83587741a 416 Gene3D G3DSA:1.10.3720.10 271 395 8.6E-6 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS18595 3a1ec65a6b31e0e9791fd1d83587741a 416 Pfam PF12704 MacB-like periplasmic core domain 27 192 1.3E-14 T 22-04-2016 IPR025857 MacB-like periplasmic core domain PP4_RS18595 3a1ec65a6b31e0e9791fd1d83587741a 416 PANTHER PTHR30489 1 416 1.2E-120 T 22-04-2016 PP4_RS18595 3a1ec65a6b31e0e9791fd1d83587741a 416 Pfam PF02687 FtsX-like permease family 276 409 5.7E-21 T 22-04-2016 IPR003838 ABC transporter permease protein domain GO:0016020 PP4_RS16365 b29efdd19db78b5ce20925a9cfaba1f4 497 Gene3D G3DSA:3.40.605.10 18 278 2.4E-92 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS16365 b29efdd19db78b5ce20925a9cfaba1f4 497 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 293 304 - T 22-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 PP4_RS16365 b29efdd19db78b5ce20925a9cfaba1f4 497 PANTHER PTHR11699 1 496 0.0 T 22-04-2016 PP4_RS16365 b29efdd19db78b5ce20925a9cfaba1f4 497 SUPERFAMILY SSF53720 6 494 4.71E-162 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS16365 b29efdd19db78b5ce20925a9cfaba1f4 497 Gene3D G3DSA:3.40.309.10 279 466 6.7E-64 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PP4_RS16365 b29efdd19db78b5ce20925a9cfaba1f4 497 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 264 271 - T 22-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 PP4_RS16365 b29efdd19db78b5ce20925a9cfaba1f4 497 PANTHER PTHR11699:SF210 1 496 0.0 T 22-04-2016 PP4_RS16365 b29efdd19db78b5ce20925a9cfaba1f4 497 Pfam PF00171 Aldehyde dehydrogenase family 30 490 4.0E-165 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PP4_RS03380 e4dea06246e6afb912ff07cee5e4fc54 393 SUPERFAMILY SSF103473 3 387 1.7E-56 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS03380 e4dea06246e6afb912ff07cee5e4fc54 393 Gene3D G3DSA:1.20.1250.20 5 186 1.3E-25 T 22-04-2016 PP4_RS03380 e4dea06246e6afb912ff07cee5e4fc54 393 PANTHER PTHR23502 1 382 8.9E-133 T 22-04-2016 PP4_RS03380 e4dea06246e6afb912ff07cee5e4fc54 393 PANTHER PTHR23502:SF19 1 382 8.9E-133 T 22-04-2016 PP4_RS03380 e4dea06246e6afb912ff07cee5e4fc54 393 Gene3D G3DSA:1.20.1250.20 202 386 3.2E-5 T 22-04-2016 PP4_RS03380 e4dea06246e6afb912ff07cee5e4fc54 393 TIGRFAM TIGR00710 efflux_Bcr_CflA: drug resistance transporter, Bcr/CflA subfamily 3 378 9.7E-89 T 22-04-2016 IPR004812 Drug resistance transporter Bcr/CmlA subfamily GO:0005215|GO:0006810|GO:0016021 PP4_RS03380 e4dea06246e6afb912ff07cee5e4fc54 393 Pfam PF07690 Major Facilitator Superfamily 15 348 2.2E-37 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS03210 425dd7b1e45d3ff27bde856e243498c0 325 SUPERFAMILY SSF52518 5 324 3.79E-99 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS03210 425dd7b1e45d3ff27bde856e243498c0 325 PANTHER PTHR11516 4 325 5.0E-145 T 22-04-2016 PP4_RS03210 425dd7b1e45d3ff27bde856e243498c0 325 Pfam PF00676 Dehydrogenase E1 component 17 313 2.4E-96 T 22-04-2016 IPR001017 Dehydrogenase, E1 component GO:0008152|GO:0016624 PP4_RS03210 425dd7b1e45d3ff27bde856e243498c0 325 Gene3D G3DSA:3.40.50.970 3 324 3.9E-125 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS15175 7856b49eb1bbe57e1e45df30b63341cf 159 SUPERFAMILY SSF82866 2 136 2.22E-19 T 22-04-2016 PP4_RS15175 7856b49eb1bbe57e1e45df30b63341cf 159 Pfam PF03176 MMPL family 20 132 3.2E-6 T 22-04-2016 IPR004869 Membrane transport protein, MMPL domain GO:0016020 PP4_RS15175 7856b49eb1bbe57e1e45df30b63341cf 159 Gene3D G3DSA:1.20.1640.10 2 134 3.1E-19 T 22-04-2016 PP4_RS17550 cecfdb08b88bf93bdd2536ab8077b836 358 PIRSF PIRSF001361 2 355 4.7E-158 T 22-04-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 PP4_RS17550 cecfdb08b88bf93bdd2536ab8077b836 358 TIGRFAM TIGR00034 aroFGH: 3-deoxy-7-phosphoheptulonate synthase 7 349 5.5E-151 T 22-04-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 PP4_RS17550 cecfdb08b88bf93bdd2536ab8077b836 358 SUPERFAMILY SSF51569 8 349 2.66E-134 T 22-04-2016 PP4_RS17550 cecfdb08b88bf93bdd2536ab8077b836 358 Pfam PF00793 DAHP synthetase I family 41 340 1.4E-93 T 22-04-2016 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 PP4_RS17550 cecfdb08b88bf93bdd2536ab8077b836 358 Gene3D G3DSA:3.20.20.70 11 352 6.2E-148 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS17550 cecfdb08b88bf93bdd2536ab8077b836 358 PANTHER PTHR21225 6 350 3.0E-217 T 22-04-2016 IPR006219 DHAP synthase, class 1 GO:0003849|GO:0009073 KEGG: 00400+2.5.1.54|MetaCyc: PWY-6164|UniPathway: UPA00053 PP4_RS16565 8ea65dd49fe8b2412cbc823b16d60094 308 SUPERFAMILY SSF53474 7 284 2.54E-47 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS16565 8ea65dd49fe8b2412cbc823b16d60094 308 PANTHER PTHR10992 194 296 8.4E-33 T 22-04-2016 PP4_RS16565 8ea65dd49fe8b2412cbc823b16d60094 308 PANTHER PTHR10992 12 171 8.4E-33 T 22-04-2016 PP4_RS16565 8ea65dd49fe8b2412cbc823b16d60094 308 Gene3D G3DSA:3.40.50.1820 8 284 3.8E-45 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS16565 8ea65dd49fe8b2412cbc823b16d60094 308 Pfam PF00561 alpha/beta hydrolase fold 31 150 6.8E-19 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS08135 ad64d0cca58922244691f04ce19fe01a 29 Pfam PF09604 F subunit of K+-transporting ATPase (Potass_KdpF) 6 28 2.0E-6 T 22-04-2016 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 PP4_RS08135 ad64d0cca58922244691f04ce19fe01a 29 TIGRFAM TIGR02115 potass_kdpF: K+-transporting ATPase, F subunit 6 29 1.4E-8 T 22-04-2016 IPR011726 K+ transporting P-type ATPase, F subunit GO:0005886|GO:0008556|GO:0043462 PP4_RS07170 72a526b0383655a9383d9df16a1f1d14 1243 PANTHER PTHR22916 88 399 1.1E-42 T 22-04-2016 PP4_RS07170 72a526b0383655a9383d9df16a1f1d14 1243 Gene3D G3DSA:3.90.550.10 107 343 2.6E-46 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS07170 72a526b0383655a9383d9df16a1f1d14 1243 Gene3D G3DSA:3.90.550.10 441 585 3.8E-6 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS07170 72a526b0383655a9383d9df16a1f1d14 1243 SUPERFAMILY SSF53448 389 573 5.63E-10 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS07170 72a526b0383655a9383d9df16a1f1d14 1243 Gene3D G3DSA:3.90.550.10 635 849 1.3E-22 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS07170 72a526b0383655a9383d9df16a1f1d14 1243 SUPERFAMILY SSF53756 957 1222 9.42E-9 T 22-04-2016 PP4_RS07170 72a526b0383655a9383d9df16a1f1d14 1243 Pfam PF00535 Glycosyl transferase family 2 109 234 6.5E-28 T 22-04-2016 IPR001173 Glycosyltransferase 2-like PP4_RS07170 72a526b0383655a9383d9df16a1f1d14 1243 Pfam PF00535 Glycosyl transferase family 2 644 756 3.2E-6 T 22-04-2016 IPR001173 Glycosyltransferase 2-like PP4_RS07170 72a526b0383655a9383d9df16a1f1d14 1243 SUPERFAMILY SSF53448 105 305 5.39E-44 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS07170 72a526b0383655a9383d9df16a1f1d14 1243 SUPERFAMILY SSF53448 633 852 1.88E-25 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS13995 2bd4df087a0eb7b501179173cd20173e 248 Pfam PF13618 Gluconate 2-dehydrogenase subunit 3 66 221 2.1E-36 T 22-04-2016 IPR027056 Gluconate 2-dehydrogenase subunit 3 KEGG: 00030+1.1.99.3|MetaCyc: PWY-7165 PP4_RS07375 93b12b4b64d28819ea5b8417f744fc2f 58 Pfam PF04995 Heme exporter protein D (CcmD) 13 55 1.4E-16 T 22-04-2016 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 PP4_RS07375 93b12b4b64d28819ea5b8417f744fc2f 58 TIGRFAM TIGR03141 cytochro_ccmD: heme exporter protein CcmD 10 56 1.2E-20 T 22-04-2016 IPR007078 Haem exporter protein D (CcmD) GO:0015886|GO:0016021|GO:0017004 PP4_RS07375 93b12b4b64d28819ea5b8417f744fc2f 58 PANTHER PTHR37531 1 55 3.3E-22 T 22-04-2016 PP4_RS11510 bd194d6876d69cb701fdaad85b7aca46 283 PANTHER PTHR31157 19 283 3.1E-60 T 22-04-2016 PP4_RS11510 bd194d6876d69cb701fdaad85b7aca46 283 Pfam PF00188 Cysteine-rich secretory protein family 152 279 1.9E-17 T 22-04-2016 IPR014044 CAP domain PP4_RS11510 bd194d6876d69cb701fdaad85b7aca46 283 Gene3D G3DSA:3.40.33.10 145 275 4.9E-12 T 22-04-2016 IPR014044 CAP domain PP4_RS11510 bd194d6876d69cb701fdaad85b7aca46 283 SUPERFAMILY SSF55797 145 280 1.73E-21 T 22-04-2016 IPR014044 CAP domain PP4_RS11510 bd194d6876d69cb701fdaad85b7aca46 283 PANTHER PTHR31157:SF1 19 283 3.1E-60 T 22-04-2016 PP4_RS15800 dcf5d8ae4577d6112252f875195dd208 295 Gene3D G3DSA:3.40.190.10 184 264 8.4E-10 T 22-04-2016 PP4_RS15800 dcf5d8ae4577d6112252f875195dd208 295 Gene3D G3DSA:3.40.190.10 93 183 3.5E-25 T 22-04-2016 PP4_RS15800 dcf5d8ae4577d6112252f875195dd208 295 Gene3D G3DSA:1.10.10.10 6 87 5.0E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS15800 dcf5d8ae4577d6112252f875195dd208 295 PANTHER PTHR30419 1 288 1.1E-56 T 22-04-2016 PP4_RS15800 dcf5d8ae4577d6112252f875195dd208 295 Pfam PF03466 LysR substrate binding domain 93 288 8.6E-41 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS15800 dcf5d8ae4577d6112252f875195dd208 295 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 66 8.0E-19 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS15800 dcf5d8ae4577d6112252f875195dd208 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 6.9E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS15800 dcf5d8ae4577d6112252f875195dd208 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 6.9E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS15800 dcf5d8ae4577d6112252f875195dd208 295 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 6.9E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS15800 dcf5d8ae4577d6112252f875195dd208 295 SUPERFAMILY SSF46785 5 115 4.67E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS15800 dcf5d8ae4577d6112252f875195dd208 295 SUPERFAMILY SSF53850 95 292 9.51E-40 T 22-04-2016 PP4_RS06140 073585220736f7ce67afe4b176223c6c 299 PANTHER PTHR33281:SF3 1 293 5.7E-66 T 22-04-2016 PP4_RS06140 073585220736f7ce67afe4b176223c6c 299 PANTHER PTHR33281 1 293 5.7E-66 T 22-04-2016 PP4_RS06140 073585220736f7ce67afe4b176223c6c 299 Pfam PF01062 Bestrophin, RFP-TM, chloride channel 4 276 2.1E-63 T 22-04-2016 IPR021134 Bestrophin/UPF0187 PP4_RS07825 b5768955ae4963a2eee58f998fd2af00 408 SUPERFAMILY SSF46626 303 392 3.25E-20 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS07825 b5768955ae4963a2eee58f998fd2af00 408 SUPERFAMILY SSF46626 21 153 5.37E-23 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS07825 b5768955ae4963a2eee58f998fd2af00 408 SUPERFAMILY SSF46626 179 291 1.41E-12 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS07825 b5768955ae4963a2eee58f998fd2af00 408 Pfam PF00034 Cytochrome c 302 389 8.2E-10 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS07825 b5768955ae4963a2eee58f998fd2af00 408 Pfam PF00034 Cytochrome c 34 133 1.6E-6 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS07825 b5768955ae4963a2eee58f998fd2af00 408 Gene3D G3DSA:1.10.760.10 29 132 7.5E-18 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS07825 b5768955ae4963a2eee58f998fd2af00 408 Gene3D G3DSA:1.10.760.10 177 279 5.3E-7 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS07825 b5768955ae4963a2eee58f998fd2af00 408 Gene3D G3DSA:1.10.760.10 291 390 1.0E-18 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS07825 b5768955ae4963a2eee58f998fd2af00 408 PRINTS PR00605 Class IC cytochrome C signature 311 322 8.8E-5 T 22-04-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 PP4_RS07825 b5768955ae4963a2eee58f998fd2af00 408 PRINTS PR00605 Class IC cytochrome C signature 364 386 8.8E-5 T 22-04-2016 IPR008168 Cytochrome c, class IC GO:0005506|GO:0009055 PP4_RS07825 b5768955ae4963a2eee58f998fd2af00 408 PIRSF PIRSF000018 1 408 1.4E-158 T 22-04-2016 IPR014353 Membrane-bound alcohol dehydrogenase, cytochrome c subunit GO:0005506|GO:0016020|GO:0016614|GO:0020037 PP4_RS07825 b5768955ae4963a2eee58f998fd2af00 408 PANTHER PTHR35008:SF5 8 408 2.3E-193 T 22-04-2016 PP4_RS07825 b5768955ae4963a2eee58f998fd2af00 408 PANTHER PTHR35008 8 408 2.3E-193 T 22-04-2016 PP4_RS20065 58368774047e689e487d7bc244a4383d 337 PANTHER PTHR22926:SF3 13 330 5.2E-66 T 22-04-2016 PP4_RS20065 58368774047e689e487d7bc244a4383d 337 Pfam PF00953 Glycosyl transferase family 4 77 227 5.2E-34 T 22-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 PP4_RS20065 58368774047e689e487d7bc244a4383d 337 PANTHER PTHR22926 13 330 5.2E-66 T 22-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 PP4_RS10455 e2911d07bd87878dc4b3c0e6c89b9f55 186 Gene3D G3DSA:3.40.50.360 1 182 9.2E-30 T 22-04-2016 IPR029039 Flavoprotein-like domain PP4_RS10455 e2911d07bd87878dc4b3c0e6c89b9f55 186 PANTHER PTHR30543:SF8 1 177 3.3E-84 T 22-04-2016 PP4_RS10455 e2911d07bd87878dc4b3c0e6c89b9f55 186 PANTHER PTHR30543 1 177 3.3E-84 T 22-04-2016 PP4_RS10455 e2911d07bd87878dc4b3c0e6c89b9f55 186 SUPERFAMILY SSF52218 1 182 3.35E-32 T 22-04-2016 IPR029039 Flavoprotein-like domain PP4_RS10455 e2911d07bd87878dc4b3c0e6c89b9f55 186 Pfam PF03358 NADPH-dependent FMN reductase 6 149 1.0E-28 T 22-04-2016 IPR005025 NADPH-dependent FMN reductase-like GO:0016491 PP4_RS10455 e2911d07bd87878dc4b3c0e6c89b9f55 186 TIGRFAM TIGR03566 FMN_reduc_MsuE: FMN reductase 6 177 2.3E-75 T 22-04-2016 IPR019912 FMN reductase, MsuE-like KEGG: 00740+1.5.1.38|MetaCyc: PWY-7723 PP4_RS24680 fecc547c139ab18ae3f93346d4f1517b 565 SUPERFAMILY SSF159672 6 218 6.54E-44 T 22-04-2016 PP4_RS24680 fecc547c139ab18ae3f93346d4f1517b 565 Gene3D G3DSA:3.40.1010.10 313 428 2.0E-27 T 22-04-2016 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008152|GO:0008168 PP4_RS24680 fecc547c139ab18ae3f93346d4f1517b 565 PANTHER PTHR21091 281 481 1.7E-39 T 22-04-2016 PP4_RS24680 fecc547c139ab18ae3f93346d4f1517b 565 PANTHER PTHR21091 52 70 1.7E-39 T 22-04-2016 PP4_RS24680 fecc547c139ab18ae3f93346d4f1517b 565 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 314 525 1.2E-31 T 22-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 PP4_RS24680 fecc547c139ab18ae3f93346d4f1517b 565 TIGRFAM TIGR01466 cobJ_cbiH: precorrin-3B C17-methyltransferase 315 561 4.1E-84 T 22-04-2016 IPR006363 Precorrin-3B C17-methyltransferase domain GO:0008168|GO:0009236 PP4_RS24680 fecc547c139ab18ae3f93346d4f1517b 565 SUPERFAMILY SSF53790 312 561 1.83E-48 T 22-04-2016 IPR000878 Tetrapyrrole methylase GO:0008152|GO:0008168 PP4_RS24680 fecc547c139ab18ae3f93346d4f1517b 565 Gene3D G3DSA:3.30.950.10 429 541 1.2E-8 T 22-04-2016 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008152|GO:0008168 PP4_RS24680 fecc547c139ab18ae3f93346d4f1517b 565 Pfam PF11760 Cobalamin synthesis G N-terminal 55 133 3.2E-23 T 22-04-2016 IPR021744 Cobalamin synthesis G, N-terminal KEGG: 00860+3.7.1.12|MetaCyc: PWY-7377|UniPathway: UPA00148 PP4_RS24680 fecc547c139ab18ae3f93346d4f1517b 565 PANTHER PTHR21091:SF9 281 481 1.7E-39 T 22-04-2016 PP4_RS24680 fecc547c139ab18ae3f93346d4f1517b 565 PANTHER PTHR21091:SF9 52 70 1.7E-39 T 22-04-2016 PP4_RS25610 a1eca6d71e95453a54873ae889d9bbb7 130 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 30 104 1.6E-33 T 22-04-2016 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19|UniPathway: UPA00031 PP4_RS25610 a1eca6d71e95453a54873ae889d9bbb7 130 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 53 104 7.0E-25 T 22-04-2016 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19|UniPathway: UPA00031 PP4_RS25610 a1eca6d71e95453a54873ae889d9bbb7 130 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 4 108 32.641 T 22-04-2016 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19|UniPathway: UPA00031 PP4_RS25610 a1eca6d71e95453a54873ae889d9bbb7 130 PANTHER PTHR21256 1 128 3.5E-68 T 22-04-2016 PP4_RS25610 a1eca6d71e95453a54873ae889d9bbb7 130 SUPERFAMILY SSF141734 4 120 4.97E-49 T 22-04-2016 PP4_RS20815 5034309a194e0eb00a87c16e0c534222 259 Gene3D G3DSA:3.40.50.80 99 258 1.5E-50 T 22-04-2016 PP4_RS20815 5034309a194e0eb00a87c16e0c534222 259 PANTHER PTHR19370 5 239 6.6E-130 T 22-04-2016 PP4_RS20815 5034309a194e0eb00a87c16e0c534222 259 SUPERFAMILY SSF63380 6 100 1.0E-24 T 22-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 PP4_RS20815 5034309a194e0eb00a87c16e0c534222 259 Pfam PF00970 Oxidoreductase FAD-binding domain 16 99 8.3E-8 T 22-04-2016 IPR008333 Oxidoreductase, FAD-binding domain PP4_RS20815 5034309a194e0eb00a87c16e0c534222 259 PANTHER PTHR19370:SF98 5 239 6.6E-130 T 22-04-2016 PP4_RS20815 5034309a194e0eb00a87c16e0c534222 259 Pfam PF00175 Oxidoreductase NAD-binding domain 113 229 1.0E-9 T 22-04-2016 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 PP4_RS20815 5034309a194e0eb00a87c16e0c534222 259 SUPERFAMILY SSF52343 103 257 4.58E-45 T 22-04-2016 PP4_RS20815 5034309a194e0eb00a87c16e0c534222 259 Gene3D G3DSA:2.40.30.10 6 98 3.8E-31 T 22-04-2016 PP4_RS20815 5034309a194e0eb00a87c16e0c534222 259 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 52 59 6.2E-7 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS20815 5034309a194e0eb00a87c16e0c534222 259 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 216 224 6.2E-7 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS20815 5034309a194e0eb00a87c16e0c534222 259 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 112 131 6.2E-7 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS20815 5034309a194e0eb00a87c16e0c534222 259 PRINTS PR00371 Flavoprotein pyridine nucleotide cytochrome reductase signature 137 146 6.2E-7 T 22-04-2016 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase GO:0016491|GO:0055114 PP4_RS22760 748d7e8c1077a6d93ee484e90f42fc12 86 Pfam PF09413 Putative prokaryotic signal transducing protein 1 66 2.1E-10 T 22-04-2016 IPR018551 Domain of unknown function DUF2007 PP4_RS19270 3ae8a30fb654cfd5306cc2c6e4c381ff 257 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 147 175 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PP4_RS19270 3ae8a30fb654cfd5306cc2c6e4c381ff 257 Gene3D G3DSA:3.40.50.720 12 252 1.9E-75 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS19270 3ae8a30fb654cfd5306cc2c6e4c381ff 257 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 20 251 4.9E-70 T 22-04-2016 PP4_RS19270 3ae8a30fb654cfd5306cc2c6e4c381ff 257 PANTHER PTHR24314 14 256 8.3E-64 T 22-04-2016 PP4_RS19270 3ae8a30fb654cfd5306cc2c6e4c381ff 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 3.0E-9 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19270 3ae8a30fb654cfd5306cc2c6e4c381ff 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 179 3.0E-9 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19270 3ae8a30fb654cfd5306cc2c6e4c381ff 257 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 140 148 3.0E-9 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19270 3ae8a30fb654cfd5306cc2c6e4c381ff 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 15 32 5.2E-35 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19270 3ae8a30fb654cfd5306cc2c6e4c381ff 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 160 179 5.2E-35 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19270 3ae8a30fb654cfd5306cc2c6e4c381ff 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 180 197 5.2E-35 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19270 3ae8a30fb654cfd5306cc2c6e4c381ff 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 5.2E-35 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19270 3ae8a30fb654cfd5306cc2c6e4c381ff 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 134 150 5.2E-35 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19270 3ae8a30fb654cfd5306cc2c6e4c381ff 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 214 234 5.2E-35 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19270 3ae8a30fb654cfd5306cc2c6e4c381ff 257 PANTHER PTHR24314:SF12 14 256 8.3E-64 T 22-04-2016 PP4_RS19270 3ae8a30fb654cfd5306cc2c6e4c381ff 257 SUPERFAMILY SSF51735 12 251 6.2E-76 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS14545 a07c77424e33e8667923d6e2d8be7a25 324 Gene3D G3DSA:3.40.50.720 2 198 5.0E-60 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS14545 a07c77424e33e8667923d6e2d8be7a25 324 PANTHER PTHR10366:SF77 2 324 9.3E-159 T 22-04-2016 PP4_RS14545 a07c77424e33e8667923d6e2d8be7a25 324 Pfam PF01370 NAD dependent epimerase/dehydratase family 3 241 7.3E-54 T 22-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 PP4_RS14545 a07c77424e33e8667923d6e2d8be7a25 324 SUPERFAMILY SSF51735 1 322 1.07E-83 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS14545 a07c77424e33e8667923d6e2d8be7a25 324 Gene3D G3DSA:3.90.25.10 199 320 5.2E-16 T 22-04-2016 PP4_RS14545 a07c77424e33e8667923d6e2d8be7a25 324 PANTHER PTHR10366 2 324 9.3E-159 T 22-04-2016 PP4_RS14545 a07c77424e33e8667923d6e2d8be7a25 324 PRINTS PR01713 Nucleotide sugar epimerase signature 29 45 1.2E-21 T 22-04-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 PP4_RS14545 a07c77424e33e8667923d6e2d8be7a25 324 PRINTS PR01713 Nucleotide sugar epimerase signature 284 301 1.2E-21 T 22-04-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 PP4_RS14545 a07c77424e33e8667923d6e2d8be7a25 324 PRINTS PR01713 Nucleotide sugar epimerase signature 216 231 1.2E-21 T 22-04-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 PP4_RS14545 a07c77424e33e8667923d6e2d8be7a25 324 PRINTS PR01713 Nucleotide sugar epimerase signature 245 260 1.2E-21 T 22-04-2016 IPR008089 Nucleotide sugar epimerase GO:0005975|GO:0016857 PP4_RS19520 127aec08516d24eb703e90133d625720 60 SUPERFAMILY SSF57829 2 55 3.78E-17 T 22-04-2016 IPR011332 Zinc-binding ribosomal protein GO:0006412 PP4_RS19520 127aec08516d24eb703e90133d625720 60 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 54 16.609 T 22-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 PP4_RS19520 127aec08516d24eb703e90133d625720 60 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 54 1.8E-18 T 22-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 PP4_RS19520 127aec08516d24eb703e90133d625720 60 PANTHER PTHR35534 1 60 1.1E-28 T 22-04-2016 PP4_RS19520 127aec08516d24eb703e90133d625720 60 Pfam PF01783 Ribosomal L32p protein family 2 56 7.1E-20 T 22-04-2016 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 PP4_RS21290 ffb12ebf5f4ebf89604a87a1663f6a84 383 Gene3D G3DSA:3.40.190.10 302 331 8.0E-30 T 22-04-2016 PP4_RS21290 ffb12ebf5f4ebf89604a87a1663f6a84 383 Gene3D G3DSA:3.40.190.10 36 147 8.0E-30 T 22-04-2016 PP4_RS21290 ffb12ebf5f4ebf89604a87a1663f6a84 383 Pfam PF13416 Bacterial extracellular solute-binding protein 59 332 2.7E-25 T 22-04-2016 PP4_RS21290 ffb12ebf5f4ebf89604a87a1663f6a84 383 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 163 177 5.4E-10 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS21290 ffb12ebf5f4ebf89604a87a1663f6a84 383 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 64 85 5.4E-10 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS21290 ffb12ebf5f4ebf89604a87a1663f6a84 383 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 138 154 5.4E-10 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS21290 ffb12ebf5f4ebf89604a87a1663f6a84 383 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 278 297 5.4E-10 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS21290 ffb12ebf5f4ebf89604a87a1663f6a84 383 PANTHER PTHR30222:SF5 15 332 3.4E-71 T 22-04-2016 PP4_RS21290 ffb12ebf5f4ebf89604a87a1663f6a84 383 PANTHER PTHR30222 15 332 3.4E-71 T 22-04-2016 PP4_RS21290 ffb12ebf5f4ebf89604a87a1663f6a84 383 SUPERFAMILY SSF53850 35 356 2.61E-57 T 22-04-2016 PP4_RS21290 ffb12ebf5f4ebf89604a87a1663f6a84 383 Gene3D G3DSA:3.40.190.10 148 301 5.4E-30 T 22-04-2016 PP4_RS07135 b2151ed57148ed94e78f81e0e743688a 211 SUPERFAMILY SSF56784 1 201 4.07E-38 T 22-04-2016 IPR023214 HAD-like domain PP4_RS07135 b2151ed57148ed94e78f81e0e743688a 211 Pfam PF13419 Haloacid dehalogenase-like hydrolase 5 181 1.8E-24 T 22-04-2016 IPR023214 HAD-like domain PP4_RS07135 b2151ed57148ed94e78f81e0e743688a 211 PANTHER PTHR18901 3 208 2.5E-30 T 22-04-2016 PP4_RS07135 b2151ed57148ed94e78f81e0e743688a 211 Gene3D G3DSA:1.10.150.240 18 78 1.8E-8 T 22-04-2016 IPR023198 Phosphoglycolate phosphatase, domain 2 PP4_RS07135 b2151ed57148ed94e78f81e0e743688a 211 PANTHER PTHR18901:SF14 3 208 2.5E-30 T 22-04-2016 PP4_RS07135 b2151ed57148ed94e78f81e0e743688a 211 Gene3D G3DSA:3.40.50.1000 2 16 7.4E-24 T 22-04-2016 IPR023214 HAD-like domain PP4_RS07135 b2151ed57148ed94e78f81e0e743688a 211 Gene3D G3DSA:3.40.50.1000 83 197 7.4E-24 T 22-04-2016 IPR023214 HAD-like domain PP4_RS11260 f02395b860cc8d63067aa6fa5005aab3 302 PANTHER PTHR30118:SF8 1 296 8.8E-98 T 22-04-2016 PP4_RS11260 f02395b860cc8d63067aa6fa5005aab3 302 SUPERFAMILY SSF46785 5 85 1.56E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS11260 f02395b860cc8d63067aa6fa5005aab3 302 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 9 68 7.2E-17 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS11260 f02395b860cc8d63067aa6fa5005aab3 302 Gene3D G3DSA:3.40.190.10 182 269 2.6E-22 T 22-04-2016 PP4_RS11260 f02395b860cc8d63067aa6fa5005aab3 302 Pfam PF03466 LysR substrate binding domain 95 294 1.6E-25 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS11260 f02395b860cc8d63067aa6fa5005aab3 302 SUPERFAMILY SSF53850 90 295 3.94E-43 T 22-04-2016 PP4_RS11260 f02395b860cc8d63067aa6fa5005aab3 302 PANTHER PTHR30118 1 296 8.8E-98 T 22-04-2016 PP4_RS11260 f02395b860cc8d63067aa6fa5005aab3 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 35 45 8.8E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS11260 f02395b860cc8d63067aa6fa5005aab3 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 24 35 8.8E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS11260 f02395b860cc8d63067aa6fa5005aab3 302 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 45 56 8.8E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS11260 f02395b860cc8d63067aa6fa5005aab3 302 Gene3D G3DSA:1.10.10.10 2 86 7.6E-30 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS11260 f02395b860cc8d63067aa6fa5005aab3 302 Gene3D G3DSA:3.40.190.10 273 299 1.8E-32 T 22-04-2016 PP4_RS11260 f02395b860cc8d63067aa6fa5005aab3 302 Gene3D G3DSA:3.40.190.10 90 173 1.8E-32 T 22-04-2016 PP4_RS09610 eba088bdfd2d6fcaed3b5fbd5ad98a67 389 Pfam PF08028 Acyl-CoA dehydrogenase, C-terminal domain 236 367 1.9E-36 T 22-04-2016 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain PP4_RS09610 eba088bdfd2d6fcaed3b5fbd5ad98a67 389 PANTHER PTHR10909:SF316 18 380 5.9E-35 T 22-04-2016 PP4_RS09610 eba088bdfd2d6fcaed3b5fbd5ad98a67 389 SUPERFAMILY SSF56645 18 201 1.57E-28 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 PP4_RS09610 eba088bdfd2d6fcaed3b5fbd5ad98a67 389 Gene3D G3DSA:2.40.110.10 112 195 2.7E-24 T 22-04-2016 PP4_RS09610 eba088bdfd2d6fcaed3b5fbd5ad98a67 389 Gene3D G3DSA:1.10.540.10 4 109 1.4E-32 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS09610 eba088bdfd2d6fcaed3b5fbd5ad98a67 389 PIRSF PIRSF016578 1 389 3.2E-128 T 22-04-2016 PP4_RS09610 eba088bdfd2d6fcaed3b5fbd5ad98a67 389 SUPERFAMILY SSF47203 233 381 4.35E-15 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS09610 eba088bdfd2d6fcaed3b5fbd5ad98a67 389 Gene3D G3DSA:1.20.140.10 196 387 6.0E-42 T 22-04-2016 PP4_RS09610 eba088bdfd2d6fcaed3b5fbd5ad98a67 389 PANTHER PTHR10909 18 380 5.9E-35 T 22-04-2016 PP4_RS04290 f5bbb55bb867d2f17982230528ba8421 580 SUPERFAMILY SSF56519 52 219 5.23E-45 T 22-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 PP4_RS04290 f5bbb55bb867d2f17982230528ba8421 580 PANTHER PTHR30627 1 566 1.3E-218 T 22-04-2016 PP4_RS04290 f5bbb55bb867d2f17982230528ba8421 580 Gene3D G3DSA:3.40.710.10 227 555 5.0E-87 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS04290 f5bbb55bb867d2f17982230528ba8421 580 PANTHER PTHR30627:SF1 1 566 1.3E-218 T 22-04-2016 PP4_RS04290 f5bbb55bb867d2f17982230528ba8421 580 Pfam PF00905 Penicillin binding protein transpeptidase domain 245 545 2.3E-82 T 22-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 PP4_RS04290 f5bbb55bb867d2f17982230528ba8421 580 Pfam PF03717 Penicillin-binding Protein dimerisation domain 56 205 1.5E-17 T 22-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 PP4_RS04290 f5bbb55bb867d2f17982230528ba8421 580 SUPERFAMILY SSF56601 171 562 6.91E-91 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS04290 f5bbb55bb867d2f17982230528ba8421 580 Gene3D G3DSA:3.90.1310.10 127 226 4.5E-28 T 22-04-2016 PP4_RS22710 caa179fd2b08c9d261d066ad02985b18 535 Gene3D G3DSA:1.25.40.10 138 314 7.0E-22 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS22710 caa179fd2b08c9d261d066ad02985b18 535 Gene3D G3DSA:1.25.40.10 338 493 1.9E-10 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS22710 caa179fd2b08c9d261d066ad02985b18 535 Pfam PF00072 Response regulator receiver domain 10 124 5.7E-17 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS22710 caa179fd2b08c9d261d066ad02985b18 535 Gene3D G3DSA:3.40.50.2300 7 137 2.5E-24 T 22-04-2016 PP4_RS22710 caa179fd2b08c9d261d066ad02985b18 535 PANTHER PTHR23083 457 498 3.8E-23 T 22-04-2016 PP4_RS22710 caa179fd2b08c9d261d066ad02985b18 535 PANTHER PTHR23083 137 434 3.8E-23 T 22-04-2016 PP4_RS22710 caa179fd2b08c9d261d066ad02985b18 535 SUPERFAMILY SSF48452 109 308 3.13E-19 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS22710 caa179fd2b08c9d261d066ad02985b18 535 SUPERFAMILY SSF48452 396 493 3.13E-19 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS22710 caa179fd2b08c9d261d066ad02985b18 535 Pfam PF14559 Tetratricopeptide repeat 210 269 1.4E-6 T 22-04-2016 PP4_RS22710 caa179fd2b08c9d261d066ad02985b18 535 SMART SM00448 7 124 3.2E-18 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS22710 caa179fd2b08c9d261d066ad02985b18 535 SMART SM00028 232 265 120.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS22710 caa179fd2b08c9d261d066ad02985b18 535 SMART SM00028 266 299 83.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS22710 caa179fd2b08c9d261d066ad02985b18 535 SMART SM00028 445 478 1.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS22710 caa179fd2b08c9d261d066ad02985b18 535 SMART SM00028 198 231 38.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS22710 caa179fd2b08c9d261d066ad02985b18 535 SMART SM00028 350 383 380.0 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS22710 caa179fd2b08c9d261d066ad02985b18 535 SUPERFAMILY SSF52172 7 143 1.57E-24 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS19130 ef63e11f08b864bdffc91c117286e47d 164 Pfam PF14316 Domain of unknown function (DUF4381) 5 162 2.7E-43 T 22-04-2016 IPR025489 Protein of unknown function (DUF4381 PP4_RS04965 9e7299c79a5924558082ae6d9e07831c 534 PANTHER PTHR11632:SF27 3 533 1.4E-262 T 22-04-2016 PP4_RS04965 9e7299c79a5924558082ae6d9e07831c 534 Pfam PF02910 Fumarate reductase flavoprotein C-term 441 525 1.1E-13 T 22-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 PP4_RS04965 9e7299c79a5924558082ae6d9e07831c 534 Gene3D G3DSA:3.90.700.10 244 348 2.0E-39 T 22-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain PP4_RS04965 9e7299c79a5924558082ae6d9e07831c 534 SUPERFAMILY SSF51905 356 448 9.58E-74 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS04965 9e7299c79a5924558082ae6d9e07831c 534 SUPERFAMILY SSF51905 5 255 9.58E-74 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS04965 9e7299c79a5924558082ae6d9e07831c 534 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 9 28 1.6E-8 T 22-04-2016 PP4_RS04965 9e7299c79a5924558082ae6d9e07831c 534 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 355 377 1.6E-8 T 22-04-2016 PP4_RS04965 9e7299c79a5924558082ae6d9e07831c 534 Pfam PF00890 FAD binding domain 8 392 4.7E-103 T 22-04-2016 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain PP4_RS04965 9e7299c79a5924558082ae6d9e07831c 534 Gene3D G3DSA:3.50.50.60 4 243 1.4E-102 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS04965 9e7299c79a5924558082ae6d9e07831c 534 Gene3D G3DSA:3.50.50.60 349 411 1.4E-102 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS04965 9e7299c79a5924558082ae6d9e07831c 534 TIGRFAM TIGR00551 nadB: L-aspartate oxidase 6 520 1.3E-200 T 22-04-2016 IPR005288 L-aspartate oxidase GO:0005737|GO:0008734|GO:0009435|GO:0055114 KEGG: 00250+1.4.3.16|KEGG: 00760+1.4.3.16|MetaCyc: PWY-5316|MetaCyc: PWY-7342|UniPathway: UPA00253 PP4_RS04965 9e7299c79a5924558082ae6d9e07831c 534 Gene3D G3DSA:1.20.58.100 427 525 1.4E-31 T 22-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 PP4_RS04965 9e7299c79a5924558082ae6d9e07831c 534 PANTHER PTHR11632 3 533 1.4E-262 T 22-04-2016 PP4_RS04965 9e7299c79a5924558082ae6d9e07831c 534 SUPERFAMILY SSF56425 238 353 2.09E-43 T 22-04-2016 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain PP4_RS04965 9e7299c79a5924558082ae6d9e07831c 534 SUPERFAMILY SSF46977 425 526 6.8E-32 T 22-04-2016 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal GO:0016491|GO:0055114 PP4_RS24585 8aa37534ccde37584c8317aed46387f0 219 SUPERFAMILY SSF52374 9 216 3.03E-53 T 22-04-2016 PP4_RS24585 8aa37534ccde37584c8317aed46387f0 219 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 8 216 30.801 T 22-04-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: REACT_11193|UniPathway: UPA00253 PP4_RS24585 8aa37534ccde37584c8317aed46387f0 219 Pfam PF01467 Cytidylyltransferase-like 12 189 1.9E-27 T 22-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 PP4_RS24585 8aa37534ccde37584c8317aed46387f0 219 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 10 72 2.4E-9 T 22-04-2016 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 PP4_RS24585 8aa37534ccde37584c8317aed46387f0 219 PANTHER PTHR12039 8 216 6.7E-52 T 22-04-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: REACT_11193|UniPathway: UPA00253 PP4_RS24585 8aa37534ccde37584c8317aed46387f0 219 Gene3D G3DSA:3.40.50.620 8 217 5.2E-66 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS24585 8aa37534ccde37584c8317aed46387f0 219 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 12 215 4.4E-50 T 22-04-2016 IPR005248 Probable nicotinate-nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|Reactome: REACT_11193|UniPathway: UPA00253 PP4_RS19220 ef637bafc44076107401daa8c7c84cff 181 PANTHER PTHR30529:SF3 2 181 1.1E-76 T 22-04-2016 PP4_RS19220 ef637bafc44076107401daa8c7c84cff 181 Pfam PF01292 Prokaryotic cytochrome b561 9 179 8.3E-23 T 22-04-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 PP4_RS19220 ef637bafc44076107401daa8c7c84cff 181 SUPERFAMILY SSF81342 6 179 2.12E-29 T 22-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 PP4_RS19220 ef637bafc44076107401daa8c7c84cff 181 PANTHER PTHR30529 2 181 1.1E-76 T 22-04-2016 PP4_RS19020 16b15cfc449087d56ed384259ef04c72 426 Gene3D G3DSA:1.20.1600.10 12 426 9.2E-84 T 22-04-2016 PP4_RS19020 16b15cfc449087d56ed384259ef04c72 426 Pfam PF02321 Outer membrane efflux protein 245 423 1.1E-21 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PP4_RS19020 16b15cfc449087d56ed384259ef04c72 426 Pfam PF02321 Outer membrane efflux protein 23 216 1.3E-15 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PP4_RS19020 16b15cfc449087d56ed384259ef04c72 426 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 12 424 3.7E-74 T 22-04-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 PP4_RS19020 16b15cfc449087d56ed384259ef04c72 426 SUPERFAMILY SSF56954 9 426 1.11E-79 T 22-04-2016 PP4_RS19020 16b15cfc449087d56ed384259ef04c72 426 PANTHER PTHR30203:SF5 9 426 3.1E-118 T 22-04-2016 PP4_RS19020 16b15cfc449087d56ed384259ef04c72 426 PANTHER PTHR30203 9 426 3.1E-118 T 22-04-2016 PP4_RS08850 a5b14685fc54ae8ca2a39e9cb562f996 146 SUPERFAMILY SSF55811 5 139 2.84E-25 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PP4_RS08850 a5b14685fc54ae8ca2a39e9cb562f996 146 PANTHER PTHR22769:SF14 3 136 1.0E-22 T 22-04-2016 PP4_RS08850 a5b14685fc54ae8ca2a39e9cb562f996 146 Pfam PF00293 NUDIX domain 6 128 2.6E-14 T 22-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 PP4_RS08850 a5b14685fc54ae8ca2a39e9cb562f996 146 PANTHER PTHR22769 3 136 1.0E-22 T 22-04-2016 PP4_RS08850 a5b14685fc54ae8ca2a39e9cb562f996 146 Gene3D G3DSA:3.90.79.10 1 142 1.7E-30 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PP4_RS13090 5c9e05962a4a4b34a50d06b951e957c0 183 Gene3D G3DSA:3.90.226.10 3 167 5.0E-18 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS13090 5c9e05962a4a4b34a50d06b951e957c0 183 SUPERFAMILY SSF52096 4 169 2.8E-28 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS13090 5c9e05962a4a4b34a50d06b951e957c0 183 Pfam PF00574 Clp protease 4 167 2.1E-12 T 22-04-2016 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA PP4_RS06540 09b2a985e0d6267de86c8180c4e3e8fb 270 PRINTS PR00111 Alpha/beta hydrolase fold signature 89 102 2.43E-8 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS06540 09b2a985e0d6267de86c8180c4e3e8fb 270 PRINTS PR00111 Alpha/beta hydrolase fold signature 103 116 2.43E-8 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS06540 09b2a985e0d6267de86c8180c4e3e8fb 270 PRINTS PR00111 Alpha/beta hydrolase fold signature 45 60 2.43E-8 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS06540 09b2a985e0d6267de86c8180c4e3e8fb 270 Gene3D G3DSA:3.40.50.1820 2 258 5.5E-71 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS06540 09b2a985e0d6267de86c8180c4e3e8fb 270 PANTHER PTHR10992 11 259 5.1E-58 T 22-04-2016 PP4_RS06540 09b2a985e0d6267de86c8180c4e3e8fb 270 Pfam PF00561 alpha/beta hydrolase fold 21 244 4.2E-26 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS06540 09b2a985e0d6267de86c8180c4e3e8fb 270 SUPERFAMILY SSF53474 2 258 7.21E-69 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS06260 398f7fd5150203d78df3903036c4487d 257 PANTHER PTHR11907:SF10 1 250 8.4E-110 T 22-04-2016 PP4_RS06260 398f7fd5150203d78df3903036c4487d 257 Pfam PF13230 Glutamine amidotransferases class-II 2 255 3.8E-106 T 22-04-2016 IPR026869 Putative glutamine amidotransferase type 2 PP4_RS06260 398f7fd5150203d78df3903036c4487d 257 Gene3D G3DSA:3.60.20.10 2 254 2.0E-66 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PP4_RS06260 398f7fd5150203d78df3903036c4487d 257 PANTHER PTHR11907 1 250 8.4E-110 T 22-04-2016 PP4_RS06260 398f7fd5150203d78df3903036c4487d 257 SUPERFAMILY SSF56235 2 251 9.44E-53 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PP4_RS04140 e38992ff9e542354a766a175bc5b1487 365 PANTHER PTHR30085:SF3 63 365 9.4E-160 T 22-04-2016 PP4_RS04140 e38992ff9e542354a766a175bc5b1487 365 SUPERFAMILY SSF161098 154 345 4.84E-38 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS04140 e38992ff9e542354a766a175bc5b1487 365 Gene3D G3DSA:1.10.3720.10 155 360 3.3E-42 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS04140 e38992ff9e542354a766a175bc5b1487 365 PANTHER PTHR30085 63 365 9.4E-160 T 22-04-2016 PP4_RS04140 e38992ff9e542354a766a175bc5b1487 365 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 173 359 1.6E-24 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS04140 e38992ff9e542354a766a175bc5b1487 365 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 155 251 8.1E-20 T 22-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PP4_RS14755 d283015a88c3b57bd147a24241ca3f2c 216 PANTHER PTHR23091 126 203 3.8E-23 T 22-04-2016 PP4_RS14755 d283015a88c3b57bd147a24241ca3f2c 216 PANTHER PTHR23091 13 88 3.8E-23 T 22-04-2016 PP4_RS14755 d283015a88c3b57bd147a24241ca3f2c 216 SUPERFAMILY SSF55729 22 197 1.72E-20 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS14755 d283015a88c3b57bd147a24241ca3f2c 216 PANTHER PTHR23091:SF240 126 203 3.8E-23 T 22-04-2016 PP4_RS14755 d283015a88c3b57bd147a24241ca3f2c 216 PANTHER PTHR23091:SF240 13 88 3.8E-23 T 22-04-2016 PP4_RS14755 d283015a88c3b57bd147a24241ca3f2c 216 Gene3D G3DSA:3.40.630.30 21 196 2.0E-19 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS14755 d283015a88c3b57bd147a24241ca3f2c 216 Pfam PF00583 Acetyltransferase (GNAT) family 129 188 3.4E-9 T 22-04-2016 IPR000182 GNAT domain GO:0008080 PP4_RS06395 37039f86d68bc8d1e797f9de4a656278 161 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 4 152 3.1E-21 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS06395 37039f86d68bc8d1e797f9de4a656278 161 Pfam PF04542 Sigma-70 region 2 4 69 1.9E-12 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS06395 37039f86d68bc8d1e797f9de4a656278 161 SUPERFAMILY SSF88659 94 152 2.83E-13 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS06395 37039f86d68bc8d1e797f9de4a656278 161 Gene3D G3DSA:1.10.10.10 97 152 1.2E-13 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS06395 37039f86d68bc8d1e797f9de4a656278 161 Gene3D G3DSA:1.10.1740.10 4 69 6.4E-11 T 22-04-2016 PP4_RS06395 37039f86d68bc8d1e797f9de4a656278 161 PANTHER PTHR30173:SF9 4 152 1.9E-35 T 22-04-2016 PP4_RS06395 37039f86d68bc8d1e797f9de4a656278 161 Pfam PF08281 Sigma-70, region 4 100 152 2.2E-13 T 22-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS06395 37039f86d68bc8d1e797f9de4a656278 161 PANTHER PTHR30173 4 152 1.9E-35 T 22-04-2016 PP4_RS06395 37039f86d68bc8d1e797f9de4a656278 161 SUPERFAMILY SSF88946 3 85 1.14E-12 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS12950 f6b480bb1ee8379eb4a872f701c34a09 774 PANTHER PTHR10799:SF774 375 613 1.0E-69 T 22-04-2016 PP4_RS12950 f6b480bb1ee8379eb4a872f701c34a09 774 Pfam PF00563 EAL domain 520 753 6.0E-68 T 22-04-2016 IPR001633 EAL domain PP4_RS12950 f6b480bb1ee8379eb4a872f701c34a09 774 PANTHER PTHR10799:SF774 173 314 1.0E-69 T 22-04-2016 PP4_RS12950 f6b480bb1ee8379eb4a872f701c34a09 774 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 340 502 1.1E-41 T 22-04-2016 IPR000160 GGDEF domain PP4_RS12950 f6b480bb1ee8379eb4a872f701c34a09 774 Gene3D G3DSA:3.30.70.270 344 508 5.1E-52 T 22-04-2016 PP4_RS12950 f6b480bb1ee8379eb4a872f701c34a09 774 SMART SM00052 513 758 1.9E-100 T 22-04-2016 IPR001633 EAL domain PP4_RS12950 f6b480bb1ee8379eb4a872f701c34a09 774 SUPERFAMILY SSF55073 347 505 2.08E-44 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS12950 f6b480bb1ee8379eb4a872f701c34a09 774 Pfam PF00990 Diguanylate cyclase, GGDEF domain 342 498 1.3E-44 T 22-04-2016 IPR000160 GGDEF domain PP4_RS12950 f6b480bb1ee8379eb4a872f701c34a09 774 PANTHER PTHR10799 173 314 1.0E-69 T 22-04-2016 PP4_RS12950 f6b480bb1ee8379eb4a872f701c34a09 774 Gene3D G3DSA:3.20.20.450 517 761 4.4E-86 T 22-04-2016 IPR001633 EAL domain PP4_RS12950 f6b480bb1ee8379eb4a872f701c34a09 774 SUPERFAMILY SSF141868 519 762 6.02E-82 T 22-04-2016 IPR001633 EAL domain PP4_RS12950 f6b480bb1ee8379eb4a872f701c34a09 774 SMART SM00267 331 503 1.9E-51 T 22-04-2016 IPR000160 GGDEF domain PP4_RS12950 f6b480bb1ee8379eb4a872f701c34a09 774 PANTHER PTHR10799 375 613 1.0E-69 T 22-04-2016 PP4_RS08775 8394471d3bdb233a2ce9c6a457252c2a 181 ProSitePatterns PS00213 Lipocalin signature. 34 45 - T 22-04-2016 IPR022272 Lipocalin family conserved site PP4_RS08775 8394471d3bdb233a2ce9c6a457252c2a 181 PANTHER PTHR10612 1 177 1.7E-37 T 22-04-2016 PP4_RS08775 8394471d3bdb233a2ce9c6a457252c2a 181 PIRSF PIRSF036893 1 180 7.7E-54 T 22-04-2016 IPR022271 Lipocalin, ApoD type PP4_RS08775 8394471d3bdb233a2ce9c6a457252c2a 181 Gene3D G3DSA:2.40.128.20 5 177 9.1E-52 T 22-04-2016 IPR012674 Calycin PP4_RS08775 8394471d3bdb233a2ce9c6a457252c2a 181 SUPERFAMILY SSF50814 14 178 2.68E-44 T 22-04-2016 IPR011038 Calycin-like PP4_RS08775 8394471d3bdb233a2ce9c6a457252c2a 181 Pfam PF08212 Lipocalin-like domain 33 179 3.0E-61 T 22-04-2016 IPR000566 Lipocalin/cytosolic fatty-acid binding domain PP4_RS08775 8394471d3bdb233a2ce9c6a457252c2a 181 PRINTS PR01171 Bacterial lipocalin signature 50 66 9.1E-13 T 22-04-2016 IPR002446 Lipocalin, bacterial GO:0005215 PP4_RS08775 8394471d3bdb233a2ce9c6a457252c2a 181 PRINTS PR01171 Bacterial lipocalin signature 142 153 9.1E-13 T 22-04-2016 IPR002446 Lipocalin, bacterial GO:0005215 PP4_RS08775 8394471d3bdb233a2ce9c6a457252c2a 181 PRINTS PR01171 Bacterial lipocalin signature 33 47 9.1E-13 T 22-04-2016 IPR002446 Lipocalin, bacterial GO:0005215 PP4_RS08775 8394471d3bdb233a2ce9c6a457252c2a 181 PRINTS PR01171 Bacterial lipocalin signature 169 179 9.1E-13 T 22-04-2016 IPR002446 Lipocalin, bacterial GO:0005215 PP4_RS25200 63c90cade45dea77b161b4f4a1402ac5 391 Pfam PF04932 O-Antigen ligase 190 313 2.7E-12 T 22-04-2016 IPR007016 O-antigen ligase-related PP4_RS15645 966d2960cff94fb25442211666d4f62b 214 Pfam PF04403 Paraquat-inducible protein A 46 201 4.0E-53 T 22-04-2016 IPR007498 Paraquat-inducible protein A PP4_RS15645 966d2960cff94fb25442211666d4f62b 214 PANTHER PTHR30462 31 202 1.2E-47 T 22-04-2016 PP4_RS15645 966d2960cff94fb25442211666d4f62b 214 PANTHER PTHR30462:SF3 31 202 1.2E-47 T 22-04-2016 PP4_RS16335 af18d8bc664136c0e65b9d66ae34a293 441 PANTHER PTHR11662 29 439 8.4E-151 T 22-04-2016 PP4_RS16335 af18d8bc664136c0e65b9d66ae34a293 441 SUPERFAMILY SSF103473 24 437 2.22E-74 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS16335 af18d8bc664136c0e65b9d66ae34a293 441 Pfam PF07690 Major Facilitator Superfamily 39 396 8.6E-50 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS16335 af18d8bc664136c0e65b9d66ae34a293 441 PANTHER PTHR11662:SF277 29 439 8.4E-151 T 22-04-2016 PP4_RS16335 af18d8bc664136c0e65b9d66ae34a293 441 Gene3D G3DSA:1.20.1250.20 31 217 1.3E-42 T 22-04-2016 PP4_RS16335 af18d8bc664136c0e65b9d66ae34a293 441 Gene3D G3DSA:1.20.1250.20 236 436 1.6E-17 T 22-04-2016 PP4_RS15240 b58fc6aefb9f282ad39434c29ddb93d2 333 Pfam PF00941 FAD binding domain in molybdopterin dehydrogenase 3 217 3.1E-52 T 22-04-2016 IPR002346 Molybdopterin dehydrogenase, FAD-binding GO:0016491|GO:0055114 PP4_RS15240 b58fc6aefb9f282ad39434c29ddb93d2 333 Gene3D G3DSA:3.30.390.50 222 326 5.8E-39 T 22-04-2016 PP4_RS15240 b58fc6aefb9f282ad39434c29ddb93d2 333 Gene3D G3DSA:3.30.465.10 54 111 1.5E-34 T 22-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 PP4_RS15240 b58fc6aefb9f282ad39434c29ddb93d2 333 Gene3D G3DSA:3.30.465.10 155 217 1.5E-34 T 22-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 PP4_RS15240 b58fc6aefb9f282ad39434c29ddb93d2 333 PANTHER PTHR11908 1 117 1.5E-141 T 22-04-2016 PP4_RS15240 b58fc6aefb9f282ad39434c29ddb93d2 333 PANTHER PTHR11908 160 323 1.5E-141 T 22-04-2016 PP4_RS15240 b58fc6aefb9f282ad39434c29ddb93d2 333 SUPERFAMILY SSF56176 1 217 2.56E-62 T 22-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 PP4_RS15240 b58fc6aefb9f282ad39434c29ddb93d2 333 SMART SM01092 224 322 2.0E-32 T 22-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal PP4_RS15240 b58fc6aefb9f282ad39434c29ddb93d2 333 SUPERFAMILY SSF55447 222 322 1.96E-30 T 22-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal PP4_RS15240 b58fc6aefb9f282ad39434c29ddb93d2 333 Gene3D G3DSA:3.30.43.10 1 49 5.3E-20 T 22-04-2016 IPR016167 FAD-binding, type 2, subdomain 1 GO:0003824|GO:0050660|GO:0055114 PP4_RS15240 b58fc6aefb9f282ad39434c29ddb93d2 333 PANTHER PTHR11908:SF97 1 117 1.5E-141 T 22-04-2016 PP4_RS15240 b58fc6aefb9f282ad39434c29ddb93d2 333 PANTHER PTHR11908:SF97 160 323 1.5E-141 T 22-04-2016 PP4_RS15240 b58fc6aefb9f282ad39434c29ddb93d2 333 Pfam PF03450 CO dehydrogenase flavoprotein C-terminal domain 225 322 1.1E-21 T 22-04-2016 IPR005107 CO dehydrogenase flavoprotein, C-terminal PP4_RS25970 ec72f212b6fa7767253065baf3de922c 739 Gene3D G3DSA:3.40.50.300 497 636 5.0E-27 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25970 ec72f212b6fa7767253065baf3de922c 739 Gene3D G3DSA:3.40.50.300 411 432 5.0E-27 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25970 ec72f212b6fa7767253065baf3de922c 739 Pfam PF00270 DEAD/DEAH box helicase 206 368 3.8E-15 T 22-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 PP4_RS25970 ec72f212b6fa7767253065baf3de922c 739 SMART SM00487 199 395 1.1E-22 T 22-04-2016 IPR014001 Helicase superfamily 1/2, ATP-binding domain PP4_RS25970 ec72f212b6fa7767253065baf3de922c 739 Gene3D G3DSA:3.40.50.300 193 385 7.9E-42 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25970 ec72f212b6fa7767253065baf3de922c 739 PANTHER PTHR30580 1 739 1.4E-269 T 22-04-2016 PP4_RS25970 ec72f212b6fa7767253065baf3de922c 739 SUPERFAMILY SSF52540 191 383 2.08E-43 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25970 ec72f212b6fa7767253065baf3de922c 739 SMART SM00490 496 593 3.7E-7 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS25970 ec72f212b6fa7767253065baf3de922c 739 Pfam PF00271 Helicase conserved C-terminal domain 526 592 4.5E-5 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS25970 ec72f212b6fa7767253065baf3de922c 739 TIGRFAM TIGR00595 priA: primosomal protein N' 225 736 8.0E-189 T 22-04-2016 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 PP4_RS25970 ec72f212b6fa7767253065baf3de922c 739 SUPERFAMILY SSF52540 464 618 1.17E-21 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25970 ec72f212b6fa7767253065baf3de922c 739 Hamap MF_00983 Probable primosomal protein N' [priA]. 8 738 25.347 T 22-04-2016 IPR005259 Primosomal protein N' GO:0003677|GO:0004003|GO:0006260|GO:0032508 PP4_RS01720 f65a6a5a04ba405d59b9e9add9830a09 650 PANTHER PTHR11921 217 630 2.7E-169 T 22-04-2016 PP4_RS01720 f65a6a5a04ba405d59b9e9add9830a09 650 SUPERFAMILY SSF46548 224 348 1.62E-20 T 22-04-2016 IPR009051 Alpha-helical ferredoxin GO:0051536 PP4_RS01720 f65a6a5a04ba405d59b9e9add9830a09 650 PANTHER PTHR11921:SF22 217 630 2.7E-169 T 22-04-2016 PP4_RS01720 f65a6a5a04ba405d59b9e9add9830a09 650 Pfam PF02754 Cysteine-rich domain 521 607 2.7E-14 T 22-04-2016 IPR004017 Cysteine-rich domain PP4_RS01720 f65a6a5a04ba405d59b9e9add9830a09 650 Pfam PF02754 Cysteine-rich domain 398 477 2.4E-5 T 22-04-2016 IPR004017 Cysteine-rich domain PP4_RS01720 f65a6a5a04ba405d59b9e9add9830a09 650 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 245 256 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PP4_RS01720 f65a6a5a04ba405d59b9e9add9830a09 650 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 319 330 - T 22-04-2016 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site PP4_RS01720 f65a6a5a04ba405d59b9e9add9830a09 650 Pfam PF11982 Domain of unknown function (DUF3483) 4 220 1.3E-89 T 22-04-2016 IPR021872 Protein of unknown function DUF3483 PP4_RS01720 f65a6a5a04ba405d59b9e9add9830a09 650 Gene3D G3DSA:1.10.1060.10 221 350 2.0E-27 T 22-04-2016 PP4_RS01720 f65a6a5a04ba405d59b9e9add9830a09 650 Pfam PF13183 4Fe-4S dicluster domain 242 332 9.5E-12 T 22-04-2016 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain PP4_RS24505 b57e37611f2b3bb36f5d4f5226da6fc1 868 Gene3D G3DSA:3.90.740.10 223 429 1.9E-55 T 22-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 PP4_RS24505 b57e37611f2b3bb36f5d4f5226da6fc1 868 SUPERFAMILY SSF47323 670 867 1.46E-38 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS24505 b57e37611f2b3bb36f5d4f5226da6fc1 868 Gene3D G3DSA:3.40.50.620 4 222 2.3E-153 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS24505 b57e37611f2b3bb36f5d4f5226da6fc1 868 Gene3D G3DSA:3.40.50.620 626 655 2.3E-153 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS24505 b57e37611f2b3bb36f5d4f5226da6fc1 868 Gene3D G3DSA:3.40.50.620 430 580 2.3E-153 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS24505 b57e37611f2b3bb36f5d4f5226da6fc1 868 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 4 867 23.558 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 PP4_RS24505 b57e37611f2b3bb36f5d4f5226da6fc1 868 PRINTS PR00985 Leucyl-tRNA synthetase signature 127 144 1.3E-50 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 PP4_RS24505 b57e37611f2b3bb36f5d4f5226da6fc1 868 PRINTS PR00985 Leucyl-tRNA synthetase signature 185 198 1.3E-50 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 PP4_RS24505 b57e37611f2b3bb36f5d4f5226da6fc1 868 PRINTS PR00985 Leucyl-tRNA synthetase signature 531 553 1.3E-50 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 PP4_RS24505 b57e37611f2b3bb36f5d4f5226da6fc1 868 PRINTS PR00985 Leucyl-tRNA synthetase signature 564 574 1.3E-50 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 PP4_RS24505 b57e37611f2b3bb36f5d4f5226da6fc1 868 PRINTS PR00985 Leucyl-tRNA synthetase signature 153 169 1.3E-50 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 PP4_RS24505 b57e37611f2b3bb36f5d4f5226da6fc1 868 PRINTS PR00985 Leucyl-tRNA synthetase signature 215 234 1.3E-50 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 PP4_RS24505 b57e37611f2b3bb36f5d4f5226da6fc1 868 PRINTS PR00985 Leucyl-tRNA synthetase signature 492 510 1.3E-50 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 PP4_RS24505 b57e37611f2b3bb36f5d4f5226da6fc1 868 Pfam PF09334 tRNA synthetases class I (M) 39 171 6.0E-20 T 22-04-2016 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS24505 b57e37611f2b3bb36f5d4f5226da6fc1 868 Gene3D G3DSA:1.10.730.10 656 803 1.7E-43 T 22-04-2016 IPR009080 Aminoacyl-tRNA synthetase, class 1a, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS24505 b57e37611f2b3bb36f5d4f5226da6fc1 868 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 221 407 8.6E-72 T 22-04-2016 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 PP4_RS24505 b57e37611f2b3bb36f5d4f5226da6fc1 868 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 6 867 0.0 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 PP4_RS24505 b57e37611f2b3bb36f5d4f5226da6fc1 868 Pfam PF08264 Anticodon-binding domain of tRNA 707 829 6.3E-17 T 22-04-2016 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0000166|GO:0006418 Reactome: REACT_71 PP4_RS24505 b57e37611f2b3bb36f5d4f5226da6fc1 868 PANTHER PTHR11946:SF7 244 581 0.0 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 PP4_RS24505 b57e37611f2b3bb36f5d4f5226da6fc1 868 PANTHER PTHR11946:SF7 626 868 0.0 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 PP4_RS24505 b57e37611f2b3bb36f5d4f5226da6fc1 868 PANTHER PTHR11946:SF7 1 206 0.0 T 22-04-2016 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4 PP4_RS24505 b57e37611f2b3bb36f5d4f5226da6fc1 868 SUPERFAMILY SSF52374 5 226 4.43E-151 T 22-04-2016 PP4_RS24505 b57e37611f2b3bb36f5d4f5226da6fc1 868 SUPERFAMILY SSF52374 421 675 4.43E-151 T 22-04-2016 PP4_RS24505 b57e37611f2b3bb36f5d4f5226da6fc1 868 PANTHER PTHR11946 244 581 0.0 T 22-04-2016 PP4_RS24505 b57e37611f2b3bb36f5d4f5226da6fc1 868 PANTHER PTHR11946 626 868 0.0 T 22-04-2016 PP4_RS24505 b57e37611f2b3bb36f5d4f5226da6fc1 868 PANTHER PTHR11946 1 206 0.0 T 22-04-2016 PP4_RS24505 b57e37611f2b3bb36f5d4f5226da6fc1 868 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 42 53 - T 22-04-2016 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS24505 b57e37611f2b3bb36f5d4f5226da6fc1 868 SUPERFAMILY SSF50677 226 419 4.19E-51 T 22-04-2016 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Reactome: REACT_71 PP4_RS24505 b57e37611f2b3bb36f5d4f5226da6fc1 868 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 626 660 8.4E-7 T 22-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS24505 b57e37611f2b3bb36f5d4f5226da6fc1 868 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 423 580 4.1E-8 T 22-04-2016 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Reactome: REACT_71 PP4_RS01580 0ff71be036d10f7e9f560e3741b89718 326 Gene3D G3DSA:3.40.50.300 58 312 6.5E-109 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS01580 0ff71be036d10f7e9f560e3741b89718 326 SUPERFAMILY SSF52540 103 290 6.86E-31 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS01580 0ff71be036d10f7e9f560e3741b89718 326 Pfam PF03976 Polyphosphate kinase 2 (PPK2) 72 298 8.4E-110 T 22-04-2016 IPR022488 Polyphosphate kinase-2-related PP4_RS01580 0ff71be036d10f7e9f560e3741b89718 326 PANTHER PTHR34383:SF2 54 326 1.6E-195 T 22-04-2016 PP4_RS01580 0ff71be036d10f7e9f560e3741b89718 326 TIGRFAM TIGR03707 PPK2_P_aer: polyphosphate kinase 2 72 298 1.8E-117 T 22-04-2016 IPR022486 Polyphosphate kinase 2, PA0141 GO:0006793|GO:0008976 PP4_RS01580 0ff71be036d10f7e9f560e3741b89718 326 PANTHER PTHR34383 54 326 1.6E-195 T 22-04-2016 PP4_RS11450 d96492e52afc32ac34fffa9aa7855498 276 PANTHER PTHR12110:SF26 13 256 6.1E-62 T 22-04-2016 PP4_RS11450 d96492e52afc32ac34fffa9aa7855498 276 Pfam PF01261 Xylose isomerase-like TIM barrel 21 218 1.1E-11 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PP4_RS11450 d96492e52afc32ac34fffa9aa7855498 276 Gene3D G3DSA:3.20.20.150 6 256 4.9E-30 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PP4_RS11450 d96492e52afc32ac34fffa9aa7855498 276 SUPERFAMILY SSF51658 4 261 2.33E-52 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PP4_RS11450 d96492e52afc32ac34fffa9aa7855498 276 PANTHER PTHR12110 13 256 6.1E-62 T 22-04-2016 PP4_RS16910 d93d992bd53240051d1f8505129fbf45 81 PANTHER PTHR33713:SF5 1 68 6.5E-22 T 22-04-2016 PP4_RS16910 d93d992bd53240051d1f8505129fbf45 81 PANTHER PTHR33713 1 68 6.5E-22 T 22-04-2016 PP4_RS16910 d93d992bd53240051d1f8505129fbf45 81 SUPERFAMILY SSF143120 9 67 6.15E-9 T 22-04-2016 PP4_RS16910 d93d992bd53240051d1f8505129fbf45 81 Pfam PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system 9 76 7.4E-12 T 22-04-2016 IPR006442 Type II toxin-antitoxin system, antitoxin Phd/YefM PP4_RS20350 4177c7d6a8ea4ed15fc08ed8996ef8c6 248 PRINTS PR01805 VacJ lipoprotein signature 51 64 1.5E-23 T 22-04-2016 IPR007428 MlaA lipoprotein GO:0016020 PP4_RS20350 4177c7d6a8ea4ed15fc08ed8996ef8c6 248 PRINTS PR01805 VacJ lipoprotein signature 119 136 1.5E-23 T 22-04-2016 IPR007428 MlaA lipoprotein GO:0016020 PP4_RS20350 4177c7d6a8ea4ed15fc08ed8996ef8c6 248 PRINTS PR01805 VacJ lipoprotein signature 68 84 1.5E-23 T 22-04-2016 IPR007428 MlaA lipoprotein GO:0016020 PP4_RS20350 4177c7d6a8ea4ed15fc08ed8996ef8c6 248 PRINTS PR01805 VacJ lipoprotein signature 155 172 1.5E-23 T 22-04-2016 IPR007428 MlaA lipoprotein GO:0016020 PP4_RS20350 4177c7d6a8ea4ed15fc08ed8996ef8c6 248 PANTHER PTHR30035 32 248 2.7E-109 T 22-04-2016 IPR007428 MlaA lipoprotein GO:0016020 PP4_RS20350 4177c7d6a8ea4ed15fc08ed8996ef8c6 248 Pfam PF04333 MlaA lipoprotein 50 243 7.4E-67 T 22-04-2016 IPR007428 MlaA lipoprotein GO:0016020 PP4_RS20350 4177c7d6a8ea4ed15fc08ed8996ef8c6 248 PANTHER PTHR30035:SF2 32 248 2.7E-109 T 22-04-2016 PP4_RS21305 d24d59987df4e6fdebc58f110f550227 268 SUPERFAMILY SSF161098 10 257 2.88E-48 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS21305 d24d59987df4e6fdebc58f110f550227 268 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 80 250 1.8E-14 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS21305 d24d59987df4e6fdebc58f110f550227 268 PANTHER PTHR30193 1 268 2.6E-74 T 22-04-2016 PP4_RS21305 d24d59987df4e6fdebc58f110f550227 268 Gene3D G3DSA:1.10.3720.10 11 258 9.9E-48 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS21305 d24d59987df4e6fdebc58f110f550227 268 PANTHER PTHR30193:SF20 1 268 2.6E-74 T 22-04-2016 PP4_RS18455 a74455db6225ff574425c5edbc65b7b1 219 ProSitePatterns PS00704 Prokaryotic-type carbonic anhydrases signature 1. 39 46 - T 22-04-2016 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PP4_RS18455 a74455db6225ff574425c5edbc65b7b1 219 ProSitePatterns PS00705 Prokaryotic-type carbonic anhydrases signature 2. 82 102 - T 22-04-2016 IPR015892 Carbonic anhydrase, prokaryotic-like, conserved site GO:0004089|GO:0008270|GO:0015976 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PP4_RS18455 a74455db6225ff574425c5edbc65b7b1 219 SMART SM00947 27 193 1.2E-67 T 22-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PP4_RS18455 a74455db6225ff574425c5edbc65b7b1 219 Pfam PF00484 Carbonic anhydrase 34 188 1.1E-48 T 22-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PP4_RS18455 a74455db6225ff574425c5edbc65b7b1 219 SUPERFAMILY SSF53056 1 204 3.92E-65 T 22-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PP4_RS18455 a74455db6225ff574425c5edbc65b7b1 219 Gene3D G3DSA:3.40.1050.10 1 202 1.4E-69 T 22-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PP4_RS18455 a74455db6225ff574425c5edbc65b7b1 219 PANTHER PTHR11002:SF13 1 208 3.3E-83 T 22-04-2016 PP4_RS18455 a74455db6225ff574425c5edbc65b7b1 219 PANTHER PTHR11002 1 208 3.3E-83 T 22-04-2016 IPR001765 Carbonic anhydrase GO:0004089|GO:0008270 KEGG: 00910+4.2.1.1|MetaCyc: PWY-241|MetaCyc: PWY-6142|MetaCyc: PWY-7115|MetaCyc: PWY-7117 PP4_RS26525 3ba2c3874cd76ac391eb94b9fe10083e 957 Gene3D G3DSA:3.40.640.10 90 309 3.6E-12 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS26525 3ba2c3874cd76ac391eb94b9fe10083e 957 Gene3D G3DSA:3.40.640.10 503 739 3.2E-43 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS26525 3ba2c3874cd76ac391eb94b9fe10083e 957 PANTHER PTHR11773 2 957 0.0 T 22-04-2016 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 PP4_RS26525 3ba2c3874cd76ac391eb94b9fe10083e 957 SUPERFAMILY SSF53383 19 442 3.58E-98 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS26525 3ba2c3874cd76ac391eb94b9fe10083e 957 Pfam PF02347 Glycine cleavage system P-protein 453 727 4.9E-9 T 22-04-2016 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 PP4_RS26525 3ba2c3874cd76ac391eb94b9fe10083e 957 Pfam PF02347 Glycine cleavage system P-protein 18 441 2.7E-178 T 22-04-2016 IPR020580 Glycine cleavage system P-protein, N-terminal GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2 PP4_RS26525 3ba2c3874cd76ac391eb94b9fe10083e 957 PANTHER PTHR11773:SF1 2 957 0.0 T 22-04-2016 PP4_RS26525 3ba2c3874cd76ac391eb94b9fe10083e 957 TIGRFAM TIGR00461 gcvP: glycine dehydrogenase 19 950 0.0 T 22-04-2016 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2 PP4_RS26525 3ba2c3874cd76ac391eb94b9fe10083e 957 Hamap MF_00711 Glycine dehydrogenase (decarboxylating) [gcvP]. 10 956 25.441 T 22-04-2016 IPR003437 Glycine dehydrogenase (decarboxylating) GO:0004375|GO:0006544|GO:0055114 KEGG: 00260+1.4.4.2 PP4_RS26525 3ba2c3874cd76ac391eb94b9fe10083e 957 SUPERFAMILY SSF53383 929 951 5.33E-96 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS26525 3ba2c3874cd76ac391eb94b9fe10083e 957 SUPERFAMILY SSF53383 475 887 5.33E-96 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS11155 eb96eedc7c9c9b5ce3b8828665478e50 216 TIGRFAM TIGR04211 SH3_and_anchor: SH3 domain protein 40 215 8.0E-42 T 22-04-2016 IPR016476 SH3 domain protein PP4_RS11155 eb96eedc7c9c9b5ce3b8828665478e50 216 PIRSF PIRSF006158 10 216 8.8E-75 T 22-04-2016 IPR016476 SH3 domain protein PP4_RS11155 eb96eedc7c9c9b5ce3b8828665478e50 216 SMART SM00287 36 99 1.0E-5 T 22-04-2016 IPR003646 SH3-like domain, bacterial-type PP4_RS11155 eb96eedc7c9c9b5ce3b8828665478e50 216 Pfam PF08239 Bacterial SH3 domain 47 96 4.2E-9 T 22-04-2016 IPR003646 SH3-like domain, bacterial-type PP4_RS24875 2563c791ffca8292e48b8fb06868f30e 304 PANTHER PTHR11795:SF371 4 304 5.5E-128 T 22-04-2016 PP4_RS24875 2563c791ffca8292e48b8fb06868f30e 304 Pfam PF02653 Branched-chain amino acid transport system / permease component 9 288 1.4E-49 T 22-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 PP4_RS24875 2563c791ffca8292e48b8fb06868f30e 304 PANTHER PTHR11795 4 304 5.5E-128 T 22-04-2016 PP4_RS02520 60ee77db262da284ed01cdef22c5d286 274 Gene3D G3DSA:4.10.950.10 197 273 1.3E-34 T 22-04-2016 IPR014726 Ribosomal protein L2, domain 3 PP4_RS02520 60ee77db262da284ed01cdef22c5d286 274 PANTHER PTHR13691 1 274 8.8E-140 T 22-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02520 60ee77db262da284ed01cdef22c5d286 274 SMART SM01383 42 119 1.6E-42 T 22-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02520 60ee77db262da284ed01cdef22c5d286 274 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 274 47.111 T 22-04-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 PP4_RS02520 60ee77db262da284ed01cdef22c5d286 274 SMART SM01382 125 253 4.0E-91 T 22-04-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 PP4_RS02520 60ee77db262da284ed01cdef22c5d286 274 ProSitePatterns PS00467 Ribosomal protein L2 signature. 219 230 - T 22-04-2016 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 PP4_RS02520 60ee77db262da284ed01cdef22c5d286 274 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 274 5.8E-128 T 22-04-2016 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 PP4_RS02520 60ee77db262da284ed01cdef22c5d286 274 SUPERFAMILY SSF50104 128 273 7.22E-60 T 22-04-2016 IPR008991 Translation protein SH3-like domain PP4_RS02520 60ee77db262da284ed01cdef22c5d286 274 PIRSF PIRSF002158 12 274 1.6E-99 T 22-04-2016 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02520 60ee77db262da284ed01cdef22c5d286 274 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 126 251 2.7E-55 T 22-04-2016 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 PP4_RS02520 60ee77db262da284ed01cdef22c5d286 274 SUPERFAMILY SSF50249 2 126 1.1E-47 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS02520 60ee77db262da284ed01cdef22c5d286 274 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 118 2.4E-32 T 22-04-2016 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02520 60ee77db262da284ed01cdef22c5d286 274 Gene3D G3DSA:2.40.50.140 1 115 4.6E-50 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS02520 60ee77db262da284ed01cdef22c5d286 274 Gene3D G3DSA:2.30.30.30 120 196 1.9E-30 T 22-04-2016 IPR014722 Ribosomal protein L2 domain 2 PP4_RS26595 684ff31109dadea00bf19146d0a53652 319 Gene3D G3DSA:2.40.50.100 48 81 2.2E-15 T 22-04-2016 PP4_RS26595 684ff31109dadea00bf19146d0a53652 319 Gene3D G3DSA:2.40.50.100 184 216 2.2E-15 T 22-04-2016 PP4_RS26595 684ff31109dadea00bf19146d0a53652 319 SUPERFAMILY SSF111369 163 261 3.53E-5 T 22-04-2016 PP4_RS26595 684ff31109dadea00bf19146d0a53652 319 SUPERFAMILY SSF111369 42 162 1.07E-12 T 22-04-2016 PP4_RS26595 684ff31109dadea00bf19146d0a53652 319 Pfam PF13533 Biotin-lipoyl like 49 94 4.7E-13 T 22-04-2016 PP4_RS26595 684ff31109dadea00bf19146d0a53652 319 PANTHER PTHR30438 4 319 1.8E-68 T 22-04-2016 PP4_RS26595 684ff31109dadea00bf19146d0a53652 319 Pfam PF13437 HlyD family secretion protein 187 300 1.4E-11 T 22-04-2016 PP4_RS26595 684ff31109dadea00bf19146d0a53652 319 PANTHER PTHR30438:SF1 4 319 1.8E-68 T 22-04-2016 PP4_RS15960 fe28953eb4543c1dd57c20347b8a54b2 182 TIGRFAM TIGR03865 PQQ_CXXCW: PQQ-dependent catabolism-associated CXXCW motif protein 18 178 7.6E-71 T 22-04-2016 IPR022376 PQQ-dependent catabolism-associated CXXCW motif PP4_RS15960 fe28953eb4543c1dd57c20347b8a54b2 182 Pfam PF00581 Rhodanese-like domain 58 168 1.6E-7 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS15960 fe28953eb4543c1dd57c20347b8a54b2 182 SUPERFAMILY SSF52821 50 182 1.27E-20 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS15960 fe28953eb4543c1dd57c20347b8a54b2 182 Gene3D G3DSA:3.40.250.10 51 174 9.2E-18 T 22-04-2016 IPR001763 Rhodanese-like domain PP4_RS14470 c7c7bc1dde1f7a052ef83517794874b8 424 Pfam PF11799 impB/mucB/samB family C-terminal domain 242 351 1.5E-6 T 22-04-2016 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS14470 c7c7bc1dde1f7a052ef83517794874b8 424 PANTHER PTHR11076 1 422 2.7E-148 T 22-04-2016 PP4_RS14470 c7c7bc1dde1f7a052ef83517794874b8 424 SUPERFAMILY SSF56672 6 239 1.25E-62 T 22-04-2016 PP4_RS14470 c7c7bc1dde1f7a052ef83517794874b8 424 Pfam PF00817 impB/mucB/samB family 10 152 7.1E-31 T 22-04-2016 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS14470 c7c7bc1dde1f7a052ef83517794874b8 424 Pfam PF13438 Domain of unknown function (DUF4113) 372 422 3.1E-18 T 22-04-2016 IPR025188 Domain of unknown function DUF4113 PP4_RS14470 c7c7bc1dde1f7a052ef83517794874b8 424 Gene3D G3DSA:1.10.150.20 173 240 3.1E-18 T 22-04-2016 PP4_RS14470 c7c7bc1dde1f7a052ef83517794874b8 424 PANTHER PTHR11076:SF40 1 422 2.7E-148 T 22-04-2016 PP4_RS14470 c7c7bc1dde1f7a052ef83517794874b8 424 Gene3D G3DSA:3.30.70.270 73 156 2.1E-19 T 22-04-2016 PP4_RS18845 caf682f522e50ebe78e77e8a5c96af71 443 TIGRFAM TIGR01353 dGTP_triPase: putative dGTPase 24 435 1.4E-96 T 22-04-2016 IPR006261 Deoxyguanosinetriphosphate triphosphohydrolase GO:0000287|GO:0008832|GO:0046039 PP4_RS18845 caf682f522e50ebe78e77e8a5c96af71 443 Gene3D G3DSA:1.10.3550.10 113 146 3.0E-33 T 22-04-2016 IPR027432 Deoxyguanosinetriphosphate triphosphohydrolase, C-terminal domain PP4_RS18845 caf682f522e50ebe78e77e8a5c96af71 443 Gene3D G3DSA:1.10.3550.10 352 440 3.0E-33 T 22-04-2016 IPR027432 Deoxyguanosinetriphosphate triphosphohydrolase, C-terminal domain PP4_RS18845 caf682f522e50ebe78e77e8a5c96af71 443 Gene3D G3DSA:1.10.3210.10 149 244 2.8E-64 T 22-04-2016 IPR006674 HD domain PP4_RS18845 caf682f522e50ebe78e77e8a5c96af71 443 Gene3D G3DSA:1.10.3210.10 7 112 2.8E-64 T 22-04-2016 IPR006674 HD domain PP4_RS18845 caf682f522e50ebe78e77e8a5c96af71 443 SMART SM00471 57 255 3.6E-9 T 22-04-2016 IPR003607 HD/PDEase domain PP4_RS18845 caf682f522e50ebe78e77e8a5c96af71 443 Pfam PF01966 HD domain 61 126 7.7E-8 T 22-04-2016 IPR006674 HD domain PP4_RS18845 caf682f522e50ebe78e77e8a5c96af71 443 PANTHER PTHR11373:SF29 148 189 4.3E-81 T 22-04-2016 PP4_RS18845 caf682f522e50ebe78e77e8a5c96af71 443 PANTHER PTHR11373:SF29 1 132 4.3E-81 T 22-04-2016 PP4_RS18845 caf682f522e50ebe78e77e8a5c96af71 443 SUPERFAMILY SSF109604 21 187 7.85E-62 T 22-04-2016 PP4_RS18845 caf682f522e50ebe78e77e8a5c96af71 443 SUPERFAMILY SSF109604 224 433 7.85E-62 T 22-04-2016 PP4_RS18845 caf682f522e50ebe78e77e8a5c96af71 443 PANTHER PTHR11373 148 189 4.3E-81 T 22-04-2016 PP4_RS18845 caf682f522e50ebe78e77e8a5c96af71 443 PANTHER PTHR11373 1 132 4.3E-81 T 22-04-2016 PP4_RS18845 caf682f522e50ebe78e77e8a5c96af71 443 Gene3D G3DSA:1.10.3410.10 245 351 1.2E-35 T 22-04-2016 IPR023293 Deoxyguanosinetriphosphate triphosphohydrolase, central domain PP4_RS12615 cfe1a7e3df11d4264c5f9b95877861e3 273 Gene3D G3DSA:3.20.20.100 1 262 1.5E-79 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain PP4_RS12615 cfe1a7e3df11d4264c5f9b95877861e3 273 Pfam PF00248 Aldo/keto reductase family 14 260 8.0E-53 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain PP4_RS12615 cfe1a7e3df11d4264c5f9b95877861e3 273 PRINTS PR00069 Aldo-keto reductase signature 38 62 1.9E-20 T 22-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PP4_RS12615 cfe1a7e3df11d4264c5f9b95877861e3 273 PRINTS PR00069 Aldo-keto reductase signature 94 112 1.9E-20 T 22-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PP4_RS12615 cfe1a7e3df11d4264c5f9b95877861e3 273 PRINTS PR00069 Aldo-keto reductase signature 124 141 1.9E-20 T 22-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PP4_RS12615 cfe1a7e3df11d4264c5f9b95877861e3 273 PRINTS PR00069 Aldo-keto reductase signature 195 219 1.9E-20 T 22-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PP4_RS12615 cfe1a7e3df11d4264c5f9b95877861e3 273 PANTHER PTHR11732 1 273 1.3E-113 T 22-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta PP4_RS12615 cfe1a7e3df11d4264c5f9b95877861e3 273 PANTHER PTHR11732:SF98 1 273 1.3E-113 T 22-04-2016 PP4_RS12615 cfe1a7e3df11d4264c5f9b95877861e3 273 SUPERFAMILY SSF51430 1 261 2.88E-77 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain PP4_RS00470 79a9ffdbefe4c36610ddfb7cd65147b6 529 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 253 307 - T 22-04-2016 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS00470 79a9ffdbefe4c36610ddfb7cd65147b6 529 TIGRFAM TIGR02891 CtaD_CoxA: cytochrome c oxidase, subunit I 25 528 5.7E-212 T 22-04-2016 IPR014241 Cytochrome c oxidase, subunit I bacterial type GO:0004129|GO:0005507|GO:0005886|GO:0006810|GO:0022900|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS00470 79a9ffdbefe4c36610ddfb7cd65147b6 529 Gene3D G3DSA:1.20.210.10 13 528 2.9E-215 T 22-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS00470 79a9ffdbefe4c36610ddfb7cd65147b6 529 SUPERFAMILY SSF81442 22 528 5.63E-192 T 22-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS00470 79a9ffdbefe4c36610ddfb7cd65147b6 529 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 33 476 2.0E-152 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS00470 79a9ffdbefe4c36610ddfb7cd65147b6 529 PRINTS PR01165 Cytochrome c oxidase subunit I signature 171 189 1.7E-121 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS00470 79a9ffdbefe4c36610ddfb7cd65147b6 529 PRINTS PR01165 Cytochrome c oxidase subunit I signature 200 219 1.7E-121 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS00470 79a9ffdbefe4c36610ddfb7cd65147b6 529 PRINTS PR01165 Cytochrome c oxidase subunit I signature 297 312 1.7E-121 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS00470 79a9ffdbefe4c36610ddfb7cd65147b6 529 PRINTS PR01165 Cytochrome c oxidase subunit I signature 251 272 1.7E-121 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS00470 79a9ffdbefe4c36610ddfb7cd65147b6 529 PRINTS PR01165 Cytochrome c oxidase subunit I signature 24 49 1.7E-121 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS00470 79a9ffdbefe4c36610ddfb7cd65147b6 529 PRINTS PR01165 Cytochrome c oxidase subunit I signature 98 122 1.7E-121 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS00470 79a9ffdbefe4c36610ddfb7cd65147b6 529 PRINTS PR01165 Cytochrome c oxidase subunit I signature 321 342 1.7E-121 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS00470 79a9ffdbefe4c36610ddfb7cd65147b6 529 PRINTS PR01165 Cytochrome c oxidase subunit I signature 384 403 1.7E-121 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS00470 79a9ffdbefe4c36610ddfb7cd65147b6 529 PRINTS PR01165 Cytochrome c oxidase subunit I signature 434 455 1.7E-121 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS00470 79a9ffdbefe4c36610ddfb7cd65147b6 529 PRINTS PR01165 Cytochrome c oxidase subunit I signature 71 94 1.7E-121 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS00470 79a9ffdbefe4c36610ddfb7cd65147b6 529 PRINTS PR01165 Cytochrome c oxidase subunit I signature 141 153 1.7E-121 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS00470 79a9ffdbefe4c36610ddfb7cd65147b6 529 PRINTS PR01165 Cytochrome c oxidase subunit I signature 356 374 1.7E-121 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS00470 79a9ffdbefe4c36610ddfb7cd65147b6 529 PANTHER PTHR10422 10 529 0.0 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS00470 79a9ffdbefe4c36610ddfb7cd65147b6 529 PANTHER PTHR10422:SF27 10 529 0.0 T 22-04-2016 PP4_RS22000 968de2649e4cf7a6ce20872895f9d352 283 Pfam PF00795 Carbon-nitrogen hydrolase 2 259 1.3E-49 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PP4_RS22000 968de2649e4cf7a6ce20872895f9d352 283 PANTHER PTHR23088 1 270 3.3E-105 T 22-04-2016 PP4_RS22000 968de2649e4cf7a6ce20872895f9d352 283 SUPERFAMILY SSF56317 1 268 1.11E-75 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PP4_RS22000 968de2649e4cf7a6ce20872895f9d352 283 PANTHER PTHR23088:SF27 1 270 3.3E-105 T 22-04-2016 PP4_RS22000 968de2649e4cf7a6ce20872895f9d352 283 Gene3D G3DSA:3.60.110.10 1 270 2.9E-80 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PP4_RS22000 968de2649e4cf7a6ce20872895f9d352 283 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 153 173 - T 22-04-2016 IPR001110 Uncharacterised protein family UPF0012, conserved site PP4_RS04855 44d02686d9181c49b4c119308603a1a2 205 Pfam PF04536 Acid phosphatase of thylakoid lumen protein 104 182 1.0E-6 T 22-04-2016 IPR007621 TPM domain PP4_RS10150 8da2f715e5221a0f8fba64a3a802d811 73 SUPERFAMILY SSF160582 1 69 9.55E-30 T 22-04-2016 PP4_RS10150 8da2f715e5221a0f8fba64a3a802d811 73 SMART SM00923 3 53 1.1E-25 T 22-04-2016 IPR005153 MbtH-like protein PP4_RS10150 8da2f715e5221a0f8fba64a3a802d811 73 Gene3D G3DSA:3.90.820.10 11 69 7.1E-32 T 22-04-2016 PP4_RS10150 8da2f715e5221a0f8fba64a3a802d811 73 PANTHER PTHR38444 1 73 1.1E-41 T 22-04-2016 PP4_RS10150 8da2f715e5221a0f8fba64a3a802d811 73 PANTHER PTHR38444:SF1 1 73 1.1E-41 T 22-04-2016 PP4_RS10150 8da2f715e5221a0f8fba64a3a802d811 73 Pfam PF03621 MbtH-like protein 1 53 8.0E-25 T 22-04-2016 IPR005153 MbtH-like protein PP4_RS11860 bd3b3f5b60a89cb6ed828f2c7bc3dba5 126 PANTHER PTHR11803 1 124 6.8E-28 T 22-04-2016 IPR006175 YjgF/YER057c/UK114 family PP4_RS11860 bd3b3f5b60a89cb6ed828f2c7bc3dba5 126 Pfam PF01042 Endoribonuclease L-PSP 24 124 1.2E-22 T 22-04-2016 IPR006175 YjgF/YER057c/UK114 family PP4_RS11860 bd3b3f5b60a89cb6ed828f2c7bc3dba5 126 SUPERFAMILY SSF55298 19 125 2.36E-28 T 22-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like PP4_RS11860 bd3b3f5b60a89cb6ed828f2c7bc3dba5 126 Gene3D G3DSA:3.30.1330.40 16 125 3.2E-30 T 22-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like PP4_RS04505 e07c1a9597717436eb17db0c49664cce 475 SUPERFAMILY SSF46626 333 475 1.98E-24 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS04505 e07c1a9597717436eb17db0c49664cce 475 Gene3D G3DSA:1.10.760.10 334 475 2.5E-18 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS04505 e07c1a9597717436eb17db0c49664cce 475 Pfam PF06537 Di-haem oxidoreductase, putative peroxidase 33 475 1.5E-142 T 22-04-2016 IPR010538 Di-haem oxidoreductase, putative peroxidase PP4_RS04505 e07c1a9597717436eb17db0c49664cce 475 PANTHER PTHR30600:SF4 29 109 3.8E-157 T 22-04-2016 PP4_RS04505 e07c1a9597717436eb17db0c49664cce 475 PANTHER PTHR30600:SF4 183 231 3.8E-157 T 22-04-2016 PP4_RS04505 e07c1a9597717436eb17db0c49664cce 475 PANTHER PTHR30600:SF4 256 475 3.8E-157 T 22-04-2016 PP4_RS04505 e07c1a9597717436eb17db0c49664cce 475 PANTHER PTHR30600 29 109 3.8E-157 T 22-04-2016 PP4_RS04505 e07c1a9597717436eb17db0c49664cce 475 PANTHER PTHR30600 183 231 3.8E-157 T 22-04-2016 PP4_RS04505 e07c1a9597717436eb17db0c49664cce 475 PANTHER PTHR30600 256 475 3.8E-157 T 22-04-2016 PP4_RS04505 e07c1a9597717436eb17db0c49664cce 475 PIRSF PIRSF028099 2 475 1.2E-190 T 22-04-2016 IPR010538 Di-haem oxidoreductase, putative peroxidase PP4_RS09925 7bbbe2bb05942f500cfb529d470c2297 796 Gene3D G3DSA:2.170.130.10 43 165 7.7E-31 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS09925 7bbbe2bb05942f500cfb529d470c2297 796 Gene3D G3DSA:2.40.170.20 166 796 2.1E-73 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS09925 7bbbe2bb05942f500cfb529d470c2297 796 Pfam PF00593 TonB dependent receptor 484 780 2.5E-24 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS09925 7bbbe2bb05942f500cfb529d470c2297 796 SUPERFAMILY SSF56935 29 796 3.44E-89 T 22-04-2016 PP4_RS09925 7bbbe2bb05942f500cfb529d470c2297 796 Pfam PF07715 TonB-dependent Receptor Plug Domain 44 163 1.1E-20 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS09925 7bbbe2bb05942f500cfb529d470c2297 796 PANTHER PTHR30069 6 759 2.3E-127 T 22-04-2016 PP4_RS09925 7bbbe2bb05942f500cfb529d470c2297 796 PANTHER PTHR30069:SF4 6 759 2.3E-127 T 22-04-2016 PP4_RS08505 32d016a433feeee3606c50c06f156738 302 Gene3D G3DSA:2.30.330.10 225 296 7.1E-16 T 22-04-2016 PP4_RS08505 32d016a433feeee3606c50c06f156738 302 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 227 295 3.1E-13 T 22-04-2016 IPR001543 Surface presentation of antigen (SpoA) PP4_RS08505 32d016a433feeee3606c50c06f156738 302 SUPERFAMILY SSF101801 226 296 1.44E-13 T 22-04-2016 IPR001543 Surface presentation of antigen (SpoA) PP4_RS04205 97a743739c99863d0bccb54042dc869f 346 PANTHER PTHR11732:SF112 1 134 1.7E-186 T 22-04-2016 PP4_RS04205 97a743739c99863d0bccb54042dc869f 346 PANTHER PTHR11732:SF112 152 346 1.7E-186 T 22-04-2016 PP4_RS04205 97a743739c99863d0bccb54042dc869f 346 Pfam PF00248 Aldo/keto reductase family 16 337 3.9E-68 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain PP4_RS04205 97a743739c99863d0bccb54042dc869f 346 PRINTS PR00069 Aldo-keto reductase signature 116 134 3.1E-7 T 22-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PP4_RS04205 97a743739c99863d0bccb54042dc869f 346 PRINTS PR00069 Aldo-keto reductase signature 164 181 3.1E-7 T 22-04-2016 IPR020471 Aldo/keto reductase GO:0016491|GO:0055114 PP4_RS04205 97a743739c99863d0bccb54042dc869f 346 PANTHER PTHR11732 1 134 1.7E-186 T 22-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta PP4_RS04205 97a743739c99863d0bccb54042dc869f 346 PANTHER PTHR11732 152 346 1.7E-186 T 22-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta PP4_RS04205 97a743739c99863d0bccb54042dc869f 346 Gene3D G3DSA:3.20.20.100 1 343 7.1E-106 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain PP4_RS04205 97a743739c99863d0bccb54042dc869f 346 SUPERFAMILY SSF51430 1 344 6.94E-110 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain PP4_RS17540 a5da427cd90602b69778359b24208ab0 165 Pfam PF00582 Universal stress protein family 1 155 4.5E-22 T 22-04-2016 IPR006016 UspA GO:0006950 PP4_RS17540 a5da427cd90602b69778359b24208ab0 165 PANTHER PTHR31964 1 155 1.2E-23 T 22-04-2016 PP4_RS17540 a5da427cd90602b69778359b24208ab0 165 PANTHER PTHR31964:SF42 1 155 1.2E-23 T 22-04-2016 PP4_RS17540 a5da427cd90602b69778359b24208ab0 165 Gene3D G3DSA:3.40.50.620 1 155 6.5E-26 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS17540 a5da427cd90602b69778359b24208ab0 165 SUPERFAMILY SSF52402 1 155 3.77E-24 T 22-04-2016 PP4_RS16505 639cc96f9b919b8ebe2610accee05617 196 Pfam PF01126 Heme oxygenase 15 190 2.7E-21 T 22-04-2016 IPR016053 Haem oxygenase-like GO:0004392|GO:0006788|GO:0055114 KEGG: 00860+1.14.14.18|Reactome: REACT_9431 PP4_RS16505 639cc96f9b919b8ebe2610accee05617 196 Gene3D G3DSA:1.20.910.10 4 193 4.2E-70 T 22-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 PP4_RS16505 639cc96f9b919b8ebe2610accee05617 196 SUPERFAMILY SSF48613 12 193 6.67E-53 T 22-04-2016 IPR016084 Haem oxygenase-like, multi-helical Reactome: REACT_9431 PP4_RS13695 38bdd50c593de86d1968da5d450b9453 377 SUPERFAMILY SSF47203 224 359 2.42E-28 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS13695 38bdd50c593de86d1968da5d450b9453 377 Gene3D G3DSA:1.10.540.10 1 105 1.6E-12 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS13695 38bdd50c593de86d1968da5d450b9453 377 PANTHER PTHR10909 1 357 2.9E-42 T 22-04-2016 PP4_RS13695 38bdd50c593de86d1968da5d450b9453 377 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 227 354 1.7E-21 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS13695 38bdd50c593de86d1968da5d450b9453 377 Gene3D G3DSA:1.20.140.10 227 356 1.5E-24 T 22-04-2016 PP4_RS13695 38bdd50c593de86d1968da5d450b9453 377 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 6 105 1.4E-9 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS13695 38bdd50c593de86d1968da5d450b9453 377 PANTHER PTHR10909:SF302 1 357 2.9E-42 T 22-04-2016 PP4_RS13695 38bdd50c593de86d1968da5d450b9453 377 SUPERFAMILY SSF56645 1 207 6.28E-23 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 PP4_RS25625 79c8cad88fb6d71ec327110ef56d067e 125 PANTHER PTHR33162 1 63 1.3E-23 T 22-04-2016 PP4_RS25625 79c8cad88fb6d71ec327110ef56d067e 125 PANTHER PTHR33162:SF4 1 63 1.3E-23 T 22-04-2016 PP4_RS25625 79c8cad88fb6d71ec327110ef56d067e 125 Hamap MF_00237 Sec-independent protein translocase protein TatB [tatB]. 1 122 15.761 T 22-04-2016 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 PP4_RS25625 79c8cad88fb6d71ec327110ef56d067e 125 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 2 75 7.7E-24 T 22-04-2016 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 PP4_RS25625 79c8cad88fb6d71ec327110ef56d067e 125 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 8.5E-18 T 22-04-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 PP4_RS25625 79c8cad88fb6d71ec327110ef56d067e 125 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 8.5E-18 T 22-04-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 PP4_RS25625 79c8cad88fb6d71ec327110ef56d067e 125 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 8.5E-18 T 22-04-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 PP4_RS25625 79c8cad88fb6d71ec327110ef56d067e 125 Pfam PF02416 mttA/Hcf106 family 4 45 4.4E-8 T 22-04-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 PP4_RS02340 3cb5754102ae98525ad7a17717701b9e 318 PANTHER PTHR32332:SF21 2 316 1.4E-179 T 22-04-2016 PP4_RS02340 3cb5754102ae98525ad7a17717701b9e 318 Gene3D G3DSA:3.20.20.70 10 296 1.2E-45 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS02340 3cb5754102ae98525ad7a17717701b9e 318 SUPERFAMILY SSF51412 8 304 1.1E-53 T 22-04-2016 PP4_RS02340 3cb5754102ae98525ad7a17717701b9e 318 Pfam PF03060 Nitronate monooxygenase 88 300 2.0E-25 T 22-04-2016 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 PP4_RS02340 3cb5754102ae98525ad7a17717701b9e 318 PANTHER PTHR32332 2 316 1.4E-179 T 22-04-2016 PP4_RS11215 cf486437bd201147cf7201cbaace5135 728 PANTHER PTHR39624 11 142 7.0E-18 T 22-04-2016 PP4_RS11215 cf486437bd201147cf7201cbaace5135 728 Pfam PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding 203 538 2.9E-69 T 22-04-2016 IPR003776 YcaO-like domain PP4_RS11215 cf486437bd201147cf7201cbaace5135 728 TIGRFAM TIGR03549 TIGR03549: YcaO domain protein 2 726 0.0 T 22-04-2016 IPR019938 YcaO domain protein PP4_RS11215 cf486437bd201147cf7201cbaace5135 728 Gene3D G3DSA:3.30.300.20 1 128 2.8E-31 T 22-04-2016 IPR015946 K homology domain-like, alpha/beta PP4_RS11215 cf486437bd201147cf7201cbaace5135 728 TIGRFAM TIGR00702 TIGR00702: YcaO-type kinase domain 157 549 3.5E-93 T 22-04-2016 IPR003776 YcaO-like domain PP4_RS11215 cf486437bd201147cf7201cbaace5135 728 Pfam PF02566 OsmC-like protein 32 126 7.8E-10 T 22-04-2016 IPR003718 OsmC/Ohr family PP4_RS11215 cf486437bd201147cf7201cbaace5135 728 SUPERFAMILY SSF82784 1 129 1.44E-20 T 22-04-2016 IPR003718 OsmC/Ohr family PP4_RS11750 a834a942348485407160cbad6c8a4d81 136 PANTHER PTHR11803 22 136 1.9E-22 T 22-04-2016 IPR006175 YjgF/YER057c/UK114 family PP4_RS11750 a834a942348485407160cbad6c8a4d81 136 Pfam PF01042 Endoribonuclease L-PSP 21 135 1.1E-16 T 22-04-2016 IPR006175 YjgF/YER057c/UK114 family PP4_RS11750 a834a942348485407160cbad6c8a4d81 136 SUPERFAMILY SSF55298 6 136 4.87E-25 T 22-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like PP4_RS11750 a834a942348485407160cbad6c8a4d81 136 Gene3D G3DSA:3.30.1330.40 6 135 2.5E-28 T 22-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like PP4_RS09265 eb1d6bb6d9c338269c74e2ef5bfd06a5 86 SUPERFAMILY SSF54786 46 86 1.77E-8 T 22-04-2016 PP4_RS09265 eb1d6bb6d9c338269c74e2ef5bfd06a5 86 Pfam PF07927 HicA toxin of bacterial toxin-antitoxin, 47 85 2.0E-8 T 22-04-2016 IPR012933 HicA mRNA interferase family GO:0003729 PP4_RS09265 eb1d6bb6d9c338269c74e2ef5bfd06a5 86 Gene3D G3DSA:3.30.920.30 46 86 2.4E-9 T 22-04-2016 PP4_RS20215 fb98eb3903953fd2f5aa5a56f9af6914 210 SUPERFAMILY SSF52833 1 206 5.09E-38 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS20215 fb98eb3903953fd2f5aa5a56f9af6914 210 Gene3D G3DSA:1.10.472.60 64 169 1.3E-40 T 22-04-2016 IPR023169 UPF0413, central domain PP4_RS20215 fb98eb3903953fd2f5aa5a56f9af6914 210 Gene3D G3DSA:3.40.30.10 3 63 4.8E-24 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS20215 fb98eb3903953fd2f5aa5a56f9af6914 210 Pfam PF01323 DSBA-like thioredoxin domain 7 198 1.4E-13 T 22-04-2016 IPR001853 DSBA-like thioredoxin domain GO:0015035 PP4_RS20215 fb98eb3903953fd2f5aa5a56f9af6914 210 PANTHER PTHR13887 1 203 3.1E-19 T 22-04-2016 PP4_RS01555 493da9e8fa5ff0687dd0e7134de48a45 230 PANTHER PTHR30133 4 230 2.5E-108 T 22-04-2016 PP4_RS01555 493da9e8fa5ff0687dd0e7134de48a45 230 PANTHER PTHR30133:SF2 4 230 2.5E-108 T 22-04-2016 PP4_RS01555 493da9e8fa5ff0687dd0e7134de48a45 230 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 31 221 8.2E-19 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS01555 493da9e8fa5ff0687dd0e7134de48a45 230 SUPERFAMILY SSF161098 10 208 7.72E-40 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS01555 493da9e8fa5ff0687dd0e7134de48a45 230 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 10 117 1.5E-19 T 22-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PP4_RS01555 493da9e8fa5ff0687dd0e7134de48a45 230 Gene3D G3DSA:1.10.3720.10 11 222 8.5E-42 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS24045 27fe24961e1704503e9c50feeebc682e 265 Pfam PF02627 Carboxymuconolactone decarboxylase family 55 115 9.8E-6 T 22-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 PP4_RS24045 27fe24961e1704503e9c50feeebc682e 265 Pfam PF02627 Carboxymuconolactone decarboxylase family 176 255 9.2E-9 T 22-04-2016 IPR003779 Carboxymuconolactone decarboxylase-like GO:0051920|GO:0055114 KEGG: 00480+1.11.1.15 PP4_RS24045 27fe24961e1704503e9c50feeebc682e 265 SUPERFAMILY SSF69118 53 260 9.92E-36 T 22-04-2016 IPR029032 AhpD-like PP4_RS24045 27fe24961e1704503e9c50feeebc682e 265 Gene3D G3DSA:1.20.1290.10 159 239 2.3E-11 T 22-04-2016 IPR029032 AhpD-like PP4_RS24045 27fe24961e1704503e9c50feeebc682e 265 Gene3D G3DSA:1.20.1290.10 53 127 6.4E-13 T 22-04-2016 IPR029032 AhpD-like PP4_RS01380 83dd0e85d5f1d9a14fe5d905feb7014e 264 SUPERFAMILY SSF48317 19 229 8.24E-11 T 22-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PP4_RS01380 83dd0e85d5f1d9a14fe5d905feb7014e 264 Gene3D G3DSA:1.20.144.10 40 229 9.8E-9 T 22-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PP4_RS01380 83dd0e85d5f1d9a14fe5d905feb7014e 264 Pfam PF01569 PAP2 superfamily 107 230 2.6E-12 T 22-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PP4_RS03160 d20b41d77a57f454ac944312775ae8a1 506 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 294 305 - T 22-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 PP4_RS03160 d20b41d77a57f454ac944312775ae8a1 506 Pfam PF00171 Aldehyde dehydrogenase family 31 493 1.2E-164 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PP4_RS03160 d20b41d77a57f454ac944312775ae8a1 506 PANTHER PTHR11699:SF97 1 506 0.0 T 22-04-2016 PP4_RS03160 d20b41d77a57f454ac944312775ae8a1 506 Gene3D G3DSA:3.40.605.10 18 269 6.9E-93 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS03160 d20b41d77a57f454ac944312775ae8a1 506 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 261 268 - T 22-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 PP4_RS03160 d20b41d77a57f454ac944312775ae8a1 506 SUPERFAMILY SSF53720 14 497 1.44E-161 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS03160 d20b41d77a57f454ac944312775ae8a1 506 Gene3D G3DSA:3.40.309.10 270 469 3.3E-61 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PP4_RS03160 d20b41d77a57f454ac944312775ae8a1 506 PANTHER PTHR11699 1 506 0.0 T 22-04-2016 PP4_RS11960 aebaa9142e0fa671c0fed0b765bb0d7a 356 Pfam PF16113 Enoyl-CoA hydratase/isomerase 21 353 2.1E-119 T 22-04-2016 IPR032259 Enoyl-CoA hydratase/isomerase, HIBYL-CoA-H type GO:0003860 PP4_RS11960 aebaa9142e0fa671c0fed0b765bb0d7a 356 PANTHER PTHR11941 1 194 1.8E-106 T 22-04-2016 PP4_RS11960 aebaa9142e0fa671c0fed0b765bb0d7a 356 PANTHER PTHR11941 235 243 1.8E-106 T 22-04-2016 PP4_RS11960 aebaa9142e0fa671c0fed0b765bb0d7a 356 PANTHER PTHR11941 268 336 1.8E-106 T 22-04-2016 PP4_RS11960 aebaa9142e0fa671c0fed0b765bb0d7a 356 SUPERFAMILY SSF52096 263 340 5.35E-73 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS11960 aebaa9142e0fa671c0fed0b765bb0d7a 356 SUPERFAMILY SSF52096 10 194 5.35E-73 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS11960 aebaa9142e0fa671c0fed0b765bb0d7a 356 Gene3D G3DSA:3.90.226.10 268 336 6.1E-65 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS11960 aebaa9142e0fa671c0fed0b765bb0d7a 356 Gene3D G3DSA:3.90.226.10 7 204 6.1E-65 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS11960 aebaa9142e0fa671c0fed0b765bb0d7a 356 PANTHER PTHR11941:SF53 1 194 1.8E-106 T 22-04-2016 PP4_RS11960 aebaa9142e0fa671c0fed0b765bb0d7a 356 PANTHER PTHR11941:SF53 235 243 1.8E-106 T 22-04-2016 PP4_RS11960 aebaa9142e0fa671c0fed0b765bb0d7a 356 PANTHER PTHR11941:SF53 268 336 1.8E-106 T 22-04-2016 PP4_RS17610 dedc122c12794204c6b7f554ba4684a4 265 PANTHER PTHR10060:SF13 1 265 2.4E-147 T 22-04-2016 PP4_RS17610 dedc122c12794204c6b7f554ba4684a4 265 PIRSF PIRSF005902 1 265 3.4E-65 T 22-04-2016 IPR001130 TatD family GO:0016788 PP4_RS17610 dedc122c12794204c6b7f554ba4684a4 265 Pfam PF01026 TatD related DNase 4 263 7.5E-60 T 22-04-2016 IPR001130 TatD family GO:0016788 PP4_RS17610 dedc122c12794204c6b7f554ba4684a4 265 Gene3D G3DSA:3.20.20.140 1 264 2.7E-80 T 22-04-2016 PP4_RS17610 dedc122c12794204c6b7f554ba4684a4 265 PANTHER PTHR10060 1 265 2.4E-147 T 22-04-2016 IPR001130 TatD family GO:0016788 PP4_RS17610 dedc122c12794204c6b7f554ba4684a4 265 SUPERFAMILY SSF51556 3 264 3.0E-76 T 22-04-2016 IPR032466 Metal-dependent hydrolase PP4_RS17610 dedc122c12794204c6b7f554ba4684a4 265 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 129 139 - T 22-04-2016 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 PP4_RS16120 2ae391a6abfc46c4210b76f77c9a6a93 319 Pfam PF04773 FecR protein 108 195 2.3E-17 T 22-04-2016 IPR006860 FecR protein PP4_RS16120 2ae391a6abfc46c4210b76f77c9a6a93 319 PANTHER PTHR30273:SF3 3 314 2.3E-57 T 22-04-2016 PP4_RS16120 2ae391a6abfc46c4210b76f77c9a6a93 319 PIRSF PIRSF018266 1 313 1.8E-71 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS16120 2ae391a6abfc46c4210b76f77c9a6a93 319 Pfam PF16220 Domain of unknown function (DUF4880) 11 50 8.3E-9 T 22-04-2016 IPR032623 FecR, N-terminal PP4_RS16120 2ae391a6abfc46c4210b76f77c9a6a93 319 PANTHER PTHR30273 3 314 2.3E-57 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS18790 26d767240f9bf63035955437685fcb04 354 PANTHER PTHR37524:SF2 1 354 8.1E-174 T 22-04-2016 PP4_RS18790 26d767240f9bf63035955437685fcb04 354 Hamap MF_01551 Ribosomal RNA large subunit methyltransferase M [rlmM]. 1 349 80.159 T 22-04-2016 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 PP4_RS18790 26d767240f9bf63035955437685fcb04 354 Gene3D G3DSA:3.40.50.150 179 273 4.3E-14 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS18790 26d767240f9bf63035955437685fcb04 354 Pfam PF01728 FtsJ-like methyltransferase 181 273 4.1E-7 T 22-04-2016 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 PP4_RS18790 26d767240f9bf63035955437685fcb04 354 PIRSF PIRSF028774 1 354 1.4E-170 T 22-04-2016 IPR011224 Ribosomal RNA large subunit methyltransferase M GO:0008168 PP4_RS18790 26d767240f9bf63035955437685fcb04 354 PANTHER PTHR37524 1 354 8.1E-174 T 22-04-2016 PP4_RS18790 26d767240f9bf63035955437685fcb04 354 SUPERFAMILY SSF53335 180 273 1.74E-13 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS01360 6efc742be4ab32de2d5689756e6106a8 437 Pfam PF00672 HAMP domain 149 216 1.7E-11 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS01360 6efc742be4ab32de2d5689756e6106a8 437 Gene3D G3DSA:1.10.287.130 211 275 2.4E-15 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS01360 6efc742be4ab32de2d5689756e6106a8 437 Pfam PF00512 His Kinase A (phospho-acceptor) domain 224 276 8.1E-9 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS01360 6efc742be4ab32de2d5689756e6106a8 437 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 322 428 3.4E-18 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS01360 6efc742be4ab32de2d5689756e6106a8 437 PANTHER PTHR24423 140 146 4.3E-60 T 22-04-2016 PP4_RS01360 6efc742be4ab32de2d5689756e6106a8 437 PANTHER PTHR24423 162 428 4.3E-60 T 22-04-2016 PP4_RS01360 6efc742be4ab32de2d5689756e6106a8 437 SMART SM00304 168 220 1.4E-4 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS01360 6efc742be4ab32de2d5689756e6106a8 437 PRINTS PR00344 Bacterial sensor protein C-terminal signature 357 371 1.5E-14 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS01360 6efc742be4ab32de2d5689756e6106a8 437 PRINTS PR00344 Bacterial sensor protein C-terminal signature 414 427 1.5E-14 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS01360 6efc742be4ab32de2d5689756e6106a8 437 PRINTS PR00344 Bacterial sensor protein C-terminal signature 375 385 1.5E-14 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS01360 6efc742be4ab32de2d5689756e6106a8 437 PRINTS PR00344 Bacterial sensor protein C-terminal signature 390 408 1.5E-14 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS01360 6efc742be4ab32de2d5689756e6106a8 437 SMART SM00388 221 280 7.0E-8 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS01360 6efc742be4ab32de2d5689756e6106a8 437 SMART SM00387 318 430 1.1E-26 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS01360 6efc742be4ab32de2d5689756e6106a8 437 Gene3D G3DSA:3.30.565.10 284 429 4.2E-35 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS01360 6efc742be4ab32de2d5689756e6106a8 437 SUPERFAMILY SSF47384 205 277 1.18E-12 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS01360 6efc742be4ab32de2d5689756e6106a8 437 SUPERFAMILY SSF55874 281 429 1.7E-33 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS04370 2dcbf44c1b5cbb9f0457242188e4cfe1 210 Gene3D G3DSA:1.20.1050.10 97 208 3.6E-39 T 22-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like PP4_RS04370 2dcbf44c1b5cbb9f0457242188e4cfe1 210 PANTHER PTHR11260:SF144 12 198 1.1E-48 T 22-04-2016 PP4_RS04370 2dcbf44c1b5cbb9f0457242188e4cfe1 210 Gene3D G3DSA:3.40.30.10 10 96 2.2E-18 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS04370 2dcbf44c1b5cbb9f0457242188e4cfe1 210 Pfam PF13417 Glutathione S-transferase, N-terminal domain 12 81 1.1E-13 T 22-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 PP4_RS04370 2dcbf44c1b5cbb9f0457242188e4cfe1 210 SUPERFAMILY SSF52833 6 86 7.04E-17 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS04370 2dcbf44c1b5cbb9f0457242188e4cfe1 210 SUPERFAMILY SSF47616 81 201 1.32E-13 T 22-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like PP4_RS04370 2dcbf44c1b5cbb9f0457242188e4cfe1 210 PANTHER PTHR11260 12 198 1.1E-48 T 22-04-2016 PP4_RS24565 94c651be45aa134e4338fff68651d8a9 367 PANTHER PTHR30474:SF1 1 366 5.3E-161 T 22-04-2016 IPR011923 Rod shape-determining protein RodA GO:0008360|GO:0016021 PP4_RS24565 94c651be45aa134e4338fff68651d8a9 367 ProSitePatterns PS00428 Cell cycle proteins ftsW / rodA / spoVE signature. 319 343 - T 22-04-2016 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site GO:0007049|GO:0016021 PP4_RS24565 94c651be45aa134e4338fff68651d8a9 367 PANTHER PTHR30474 1 366 5.3E-161 T 22-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 PP4_RS24565 94c651be45aa134e4338fff68651d8a9 367 Pfam PF01098 Cell cycle protein 21 362 9.1E-110 T 22-04-2016 IPR001182 Cell cycle protein FtsW/RodA GO:0016021|GO:0051301 PP4_RS24565 94c651be45aa134e4338fff68651d8a9 367 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 14 362 8.7E-134 T 22-04-2016 IPR011923 Rod shape-determining protein RodA GO:0008360|GO:0016021 PP4_RS15740 05abcd3664a1c4b683cb17dc4cdae2cc 418 SUPERFAMILY SSF53383 5 416 3.74E-181 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS15740 05abcd3664a1c4b683cb17dc4cdae2cc 418 Pfam PF00464 Serine hydroxymethyltransferase 8 385 5.3E-182 T 22-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 PP4_RS15740 05abcd3664a1c4b683cb17dc4cdae2cc 418 Gene3D G3DSA:3.40.640.10 37 283 2.5E-107 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS15740 05abcd3664a1c4b683cb17dc4cdae2cc 418 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 221 237 - T 22-04-2016 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0004372|GO:0006544|GO:0006563|GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 PP4_RS15740 05abcd3664a1c4b683cb17dc4cdae2cc 418 PANTHER PTHR11680:SF9 8 415 0.0 T 22-04-2016 PP4_RS15740 05abcd3664a1c4b683cb17dc4cdae2cc 418 PANTHER PTHR11680 8 415 0.0 T 22-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 PP4_RS15740 05abcd3664a1c4b683cb17dc4cdae2cc 418 Gene3D G3DSA:3.90.1150.10 284 416 1.5E-54 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS15740 05abcd3664a1c4b683cb17dc4cdae2cc 418 PIRSF PIRSF000412 1 417 3.4E-166 T 22-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 PP4_RS15740 05abcd3664a1c4b683cb17dc4cdae2cc 418 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 7 416 53.147 T 22-04-2016 IPR001085 Serine hydroxymethyltransferase GO:0016740 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|UniPathway: UPA00193|UniPathway: UPA00288 PP4_RS25820 ca7ee011ba3dddafd0db5beae83bd6ed 255 SUPERFAMILY SSF88713 24 235 8.26E-71 T 22-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 PP4_RS25820 ca7ee011ba3dddafd0db5beae83bd6ed 255 Gene3D G3DSA:3.20.20.370 16 240 2.1E-90 T 22-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 PP4_RS25820 ca7ee011ba3dddafd0db5beae83bd6ed 255 Pfam PF04748 Divergent polysaccharide deacetylase 28 234 1.0E-75 T 22-04-2016 IPR006837 Protein of unknown function DUF610, YibQ PP4_RS25820 ca7ee011ba3dddafd0db5beae83bd6ed 255 PANTHER PTHR30105 7 252 1.2E-83 T 22-04-2016 PP4_RS06370 ddef6425f9381148948ba8e92ebb62da 293 SUPERFAMILY SSF103481 48 143 1.18E-7 T 22-04-2016 PP4_RS06370 ddef6425f9381148948ba8e92ebb62da 293 PANTHER PTHR12715:SF12 5 293 4.5E-39 T 22-04-2016 PP4_RS06370 ddef6425f9381148948ba8e92ebb62da 293 Pfam PF00892 EamA-like transporter family 17 140 1.1E-7 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS06370 ddef6425f9381148948ba8e92ebb62da 293 Pfam PF00892 EamA-like transporter family 152 283 8.9E-12 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS06370 ddef6425f9381148948ba8e92ebb62da 293 PANTHER PTHR12715 5 293 4.5E-39 T 22-04-2016 PP4_RS06370 ddef6425f9381148948ba8e92ebb62da 293 SUPERFAMILY SSF103481 194 286 4.32E-12 T 22-04-2016 PP4_RS10045 57deb9b579e8f22071459e27d8c572c3 466 Pfam PF05488 PAAR motif 14 82 9.5E-8 T 22-04-2016 IPR008727 PAAR motif PP4_RS16290 ee0e20a7c13a83291ffd6b36ccf89a9b 269 Gene3D G3DSA:3.40.50.720 115 247 1.4E-29 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS16290 ee0e20a7c13a83291ffd6b36ccf89a9b 269 SUPERFAMILY SSF51735 108 254 1.47E-26 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS16290 ee0e20a7c13a83291ffd6b36ccf89a9b 269 PANTHER PTHR21089 2 254 4.5E-68 T 22-04-2016 PP4_RS16290 ee0e20a7c13a83291ffd6b36ccf89a9b 269 PANTHER PTHR21089:SF6 2 254 4.5E-68 T 22-04-2016 PP4_RS16290 ee0e20a7c13a83291ffd6b36ccf89a9b 269 Pfam PF08501 Shikimate dehydrogenase substrate binding domain 11 94 2.4E-18 T 22-04-2016 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal GO:0004764|GO:0055114 KEGG: 00400+1.1.1.25|MetaCyc: PWY-6163|UniPathway: UPA00053 PP4_RS16290 ee0e20a7c13a83291ffd6b36ccf89a9b 269 Gene3D G3DSA:3.40.192.10 2 114 2.0E-28 T 22-04-2016 PP4_RS16290 ee0e20a7c13a83291ffd6b36ccf89a9b 269 SUPERFAMILY SSF53223 2 106 1.84E-23 T 22-04-2016 PP4_RS23280 0e4e160ea6e868f256c96d57e5da8ff6 288 PANTHER PTHR30487:SF0 2 38 7.7E-107 T 22-04-2016 PP4_RS23280 0e4e160ea6e868f256c96d57e5da8ff6 288 PANTHER PTHR30487:SF0 58 287 7.7E-107 T 22-04-2016 PP4_RS23280 0e4e160ea6e868f256c96d57e5da8ff6 288 Pfam PF01478 Type IV leader peptidase family 137 244 1.3E-24 T 22-04-2016 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 PP4_RS23280 0e4e160ea6e868f256c96d57e5da8ff6 288 PANTHER PTHR30487 2 38 7.7E-107 T 22-04-2016 PP4_RS23280 0e4e160ea6e868f256c96d57e5da8ff6 288 PANTHER PTHR30487 58 287 7.7E-107 T 22-04-2016 PP4_RS23280 0e4e160ea6e868f256c96d57e5da8ff6 288 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 144 161 2.4E-26 T 22-04-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- PP4_RS23280 0e4e160ea6e868f256c96d57e5da8ff6 288 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 201 211 2.4E-26 T 22-04-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- PP4_RS23280 0e4e160ea6e868f256c96d57e5da8ff6 288 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 212 223 2.4E-26 T 22-04-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- PP4_RS23280 0e4e160ea6e868f256c96d57e5da8ff6 288 PRINTS PR00864 Type IV prepilin cysteine protease (C20) family signature 224 239 2.4E-26 T 22-04-2016 IPR014032 Peptidase A24A, prepilin type IV, bacterial KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- PP4_RS23280 0e4e160ea6e868f256c96d57e5da8ff6 288 Pfam PF06750 Bacterial Peptidase A24 N-terminal domain 20 125 1.5E-32 T 22-04-2016 IPR010627 Peptidase A24A, N-terminal KEGG: 00253+2.1.1.-|KEGG: 00270+2.1.1.-|KEGG: 00332+2.1.1.-|KEGG: 00340+2.1.1.-|KEGG: 00350+2.1.1.-|KEGG: 00360+2.1.1.-|KEGG: 00380+2.1.1.-|KEGG: 00450+2.1.1.-|KEGG: 00522+2.1.1.-|KEGG: 00523+2.1.1.-|KEGG: 00624+2.1.1.-|KEGG: 00627+2.1.1.-|KEGG: 00860+2.1.1.-|KEGG: 00940+2.1.1.-|KEGG: 00941+2.1.1.-|KEGG: 00942+2.1.1.-|KEGG: 00945+2.1.1.-|KEGG: 00950+2.1.1.-|KEGG: 00981+2.1.1.- PP4_RS21665 88891f81de97834e6d9557ab2b8cf178 428 PANTHER PTHR30061:SF22 7 427 1.1E-103 T 22-04-2016 PP4_RS21665 88891f81de97834e6d9557ab2b8cf178 428 PANTHER PTHR30061 7 427 1.1E-103 T 22-04-2016 PP4_RS21665 88891f81de97834e6d9557ab2b8cf178 428 Gene3D G3DSA:3.40.190.10 150 353 1.4E-28 T 22-04-2016 PP4_RS21665 88891f81de97834e6d9557ab2b8cf178 428 SUPERFAMILY SSF53850 26 427 3.19E-54 T 22-04-2016 PP4_RS04535 ade2f90e69c80500b0673aca7b54378e 296 SUPERFAMILY SSF46785 1 111 1.89E-17 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS04535 ade2f90e69c80500b0673aca7b54378e 296 Pfam PF03466 LysR substrate binding domain 92 287 6.1E-14 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS04535 ade2f90e69c80500b0673aca7b54378e 296 PANTHER PTHR30579:SF2 1 293 6.6E-119 T 22-04-2016 PP4_RS04535 ade2f90e69c80500b0673aca7b54378e 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 40 51 4.4E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS04535 ade2f90e69c80500b0673aca7b54378e 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 30 40 4.4E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS04535 ade2f90e69c80500b0673aca7b54378e 296 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 19 30 4.4E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS04535 ade2f90e69c80500b0673aca7b54378e 296 Gene3D G3DSA:1.10.10.10 2 85 7.7E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS04535 ade2f90e69c80500b0673aca7b54378e 296 Gene3D G3DSA:3.40.190.10 92 196 1.0E-35 T 22-04-2016 PP4_RS04535 ade2f90e69c80500b0673aca7b54378e 296 SUPERFAMILY SSF53850 85 291 5.07E-22 T 22-04-2016 PP4_RS04535 ade2f90e69c80500b0673aca7b54378e 296 TIGRFAM TIGR03298 argP: transcriptional regulator, ArgP family 2 292 2.8E-115 T 22-04-2016 IPR017685 HTH-type transcriptional regulator ArgP PP4_RS04535 ade2f90e69c80500b0673aca7b54378e 296 PANTHER PTHR30579 1 293 6.6E-119 T 22-04-2016 PP4_RS04535 ade2f90e69c80500b0673aca7b54378e 296 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 62 2.8E-15 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS14715 c28970261749fdb14d6f4b02fd373e22 124 SUPERFAMILY SSF46785 32 109 2.11E-8 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS14715 c28970261749fdb14d6f4b02fd373e22 124 Gene3D G3DSA:1.10.10.10 32 101 2.0E-5 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS14715 c28970261749fdb14d6f4b02fd373e22 124 PIRSF PIRSF029502 1 124 1.0E-66 T 22-04-2016 IPR016921 Uncharacterised conserved protein UCP029502 PP4_RS08985 822789976ef54ab705db4f6ce522e0e2 137 PANTHER PTHR11075 7 137 1.6E-44 T 22-04-2016 PP4_RS08985 822789976ef54ab705db4f6ce522e0e2 137 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 21 37 - T 22-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 PP4_RS08985 822789976ef54ab705db4f6ce522e0e2 137 Pfam PF00472 RF-1 domain 5 132 3.3E-26 T 22-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 PP4_RS08985 822789976ef54ab705db4f6ce522e0e2 137 Gene3D G3DSA:3.30.160.200 2 107 9.6E-34 T 22-04-2016 PP4_RS08985 822789976ef54ab705db4f6ce522e0e2 137 SUPERFAMILY SSF75620 7 106 2.71E-12 T 22-04-2016 PP4_RS17510 7525def2149fa86cc2bb0414842cf79e 178 SUPERFAMILY SSF50630 26 164 2.98E-38 T 22-04-2016 IPR021109 Aspartic peptidase domain PP4_RS17510 7525def2149fa86cc2bb0414842cf79e 178 Pfam PF05618 Putative ATP-dependant zinc protease 26 167 2.2E-47 T 22-04-2016 PP4_RS17510 7525def2149fa86cc2bb0414842cf79e 178 PANTHER PTHR38037 21 178 2.7E-52 T 22-04-2016 PP4_RS17510 7525def2149fa86cc2bb0414842cf79e 178 Gene3D G3DSA:2.40.70.10 24 159 6.8E-44 T 22-04-2016 IPR021109 Aspartic peptidase domain PP4_RS26150 cf1dbaf0cb171b0a38b40ac9b80cb2cc 290 PANTHER PTHR33525 2 286 5.6E-51 T 22-04-2016 PP4_RS26150 cf1dbaf0cb171b0a38b40ac9b80cb2cc 290 Gene3D G3DSA:1.10.3150.10 6 286 1.5E-74 T 22-04-2016 IPR013976 Metal-dependent hydrolase HDOD PP4_RS26150 cf1dbaf0cb171b0a38b40ac9b80cb2cc 290 SUPERFAMILY SSF109604 13 286 7.07E-65 T 22-04-2016 PP4_RS26150 cf1dbaf0cb171b0a38b40ac9b80cb2cc 290 Pfam PF08668 HDOD domain 19 213 3.8E-54 T 22-04-2016 IPR013976 Metal-dependent hydrolase HDOD PP4_RS26150 cf1dbaf0cb171b0a38b40ac9b80cb2cc 290 PANTHER PTHR33525:SF3 2 286 5.6E-51 T 22-04-2016 PP4_RS15010 3aa048df4c1b471e391c18a44ea06db5 549 PANTHER PTHR15749 8 545 3.1E-170 T 22-04-2016 IPR033315 Fanconi-associated nuclease 1-like GO:0004518|GO:0036297 PP4_RS15010 3aa048df4c1b471e391c18a44ea06db5 549 Pfam PF08774 VRR-NUC domain 433 545 2.3E-34 T 22-04-2016 IPR014883 VRR-NUC domain GO:0016788 PP4_RS15010 3aa048df4c1b471e391c18a44ea06db5 549 PANTHER PTHR15749:SF3 8 545 3.1E-170 T 22-04-2016 PP4_RS15010 3aa048df4c1b471e391c18a44ea06db5 549 SMART SM00990 431 545 7.6E-48 T 22-04-2016 IPR014883 VRR-NUC domain GO:0016788 PP4_RS08675 71c18f38c31cf3c021e19ac42f06e2d7 264 Gene3D G3DSA:3.60.10.10 15 192 2.1E-16 T 22-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase PP4_RS08675 71c18f38c31cf3c021e19ac42f06e2d7 264 SUPERFAMILY SSF56219 21 262 6.28E-48 T 22-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase PP4_RS08675 71c18f38c31cf3c021e19ac42f06e2d7 264 PANTHER PTHR15822 20 264 1.3E-86 T 22-04-2016 PP4_RS08675 71c18f38c31cf3c021e19ac42f06e2d7 264 PANTHER PTHR15822:SF7 20 264 1.3E-86 T 22-04-2016 PP4_RS08675 71c18f38c31cf3c021e19ac42f06e2d7 264 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 26 255 9.9E-19 T 22-04-2016 IPR005135 Endonuclease/exonuclease/phosphatase PP4_RS19820 1bcafb2dc6394ece1b7883e253b80cd1 710 Pfam PF00593 TonB dependent receptor 469 708 2.5E-28 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS19820 1bcafb2dc6394ece1b7883e253b80cd1 710 PANTHER PTHR32552:SF1 59 710 4.7E-211 T 22-04-2016 PP4_RS19820 1bcafb2dc6394ece1b7883e253b80cd1 710 Gene3D G3DSA:2.40.170.20 173 710 4.9E-118 T 22-04-2016 IPR000531 TonB-dependent receptor, beta-barrel GO:0004872|GO:0006810|GO:0016020 PP4_RS19820 1bcafb2dc6394ece1b7883e253b80cd1 710 ProSitePatterns PS01156 TonB-dependent receptor proteins signature 2. 693 710 - T 22-04-2016 IPR010917 TonB-dependent receptor, conserved site PP4_RS19820 1bcafb2dc6394ece1b7883e253b80cd1 710 PANTHER PTHR32552 59 710 4.7E-211 T 22-04-2016 PP4_RS19820 1bcafb2dc6394ece1b7883e253b80cd1 710 Pfam PF07715 TonB-dependent Receptor Plug Domain 62 159 1.9E-9 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS19820 1bcafb2dc6394ece1b7883e253b80cd1 710 SUPERFAMILY SSF56935 24 710 2.06E-107 T 22-04-2016 PP4_RS19820 1bcafb2dc6394ece1b7883e253b80cd1 710 TIGRFAM TIGR01783 TonB-siderophor: TonB-dependent siderophore receptor 63 710 6.7E-133 T 22-04-2016 IPR010105 TonB-dependent siderophore receptor GO:0004872|GO:0005506|GO:0015891 PP4_RS19820 1bcafb2dc6394ece1b7883e253b80cd1 710 Gene3D G3DSA:2.170.130.10 26 170 4.3E-23 T 22-04-2016 IPR012910 TonB-dependent receptor, plug domain GO:0004872|GO:0006810|GO:0016020 PP4_RS21700 25b2fb239bf7daa05a4af217c3cdcecc 320 PIRSF PIRSF018266 11 319 9.1E-66 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS21700 25b2fb239bf7daa05a4af217c3cdcecc 320 Pfam PF16344 Domain of unknown function (DUF4974) 236 303 4.0E-8 T 22-04-2016 IPR032508 Protein FecR, C-terminal PP4_RS21700 25b2fb239bf7daa05a4af217c3cdcecc 320 PANTHER PTHR30273 14 319 3.1E-36 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS21700 25b2fb239bf7daa05a4af217c3cdcecc 320 Pfam PF16220 Domain of unknown function (DUF4880) 22 62 3.5E-11 T 22-04-2016 IPR032623 FecR, N-terminal PP4_RS21700 25b2fb239bf7daa05a4af217c3cdcecc 320 Pfam PF04773 FecR protein 120 208 2.3E-16 T 22-04-2016 IPR006860 FecR protein PP4_RS00440 44a67d38879f27ca5957f01aa37de003 93 Pfam PF09526 Probable metal-binding protein (DUF2387) 9 83 2.3E-35 T 22-04-2016 IPR012658 Conserved hypothetical protein CHP02443 PP4_RS00440 44a67d38879f27ca5957f01aa37de003 93 TIGRFAM TIGR02443 TIGR02443: conserved hypothetical protein 8 57 1.0E-26 T 22-04-2016 IPR012658 Conserved hypothetical protein CHP02443 PP4_RS21105 28c93a285ae68f6539ffe40c77b67f26 383 Pfam PF07687 Peptidase dimerisation domain 183 288 4.7E-27 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain PP4_RS21105 28c93a285ae68f6539ffe40c77b67f26 383 Pfam PF01546 Peptidase family M20/M25/M40 69 379 9.7E-39 T 22-04-2016 IPR002933 Peptidase M20 GO:0008152|GO:0016787 PP4_RS21105 28c93a285ae68f6539ffe40c77b67f26 383 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 105 143 - T 22-04-2016 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 PP4_RS21105 28c93a285ae68f6539ffe40c77b67f26 383 SUPERFAMILY SSF55031 187 296 1.02E-29 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain PP4_RS21105 28c93a285ae68f6539ffe40c77b67f26 383 PANTHER PTHR11014:SF106 1 382 9.3E-91 T 22-04-2016 PP4_RS21105 28c93a285ae68f6539ffe40c77b67f26 383 Gene3D G3DSA:3.40.630.10 10 195 4.1E-68 T 22-04-2016 PP4_RS21105 28c93a285ae68f6539ffe40c77b67f26 383 Gene3D G3DSA:3.40.630.10 324 382 4.1E-68 T 22-04-2016 PP4_RS21105 28c93a285ae68f6539ffe40c77b67f26 383 Gene3D G3DSA:3.30.70.360 196 296 2.1E-35 T 22-04-2016 IPR011650 Peptidase M20, dimerisation domain PP4_RS21105 28c93a285ae68f6539ffe40c77b67f26 383 TIGRFAM TIGR01246 dapE_proteo: succinyl-diaminopimelate desuccinylase 11 381 4.2E-160 T 22-04-2016 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18|UniPathway: UPA00034 PP4_RS21105 28c93a285ae68f6539ffe40c77b67f26 383 Hamap MF_01690 Succinyl-diaminopimelate desuccinylase [dapE]. 8 383 51.18 T 22-04-2016 IPR005941 Succinyl-diaminopimelate desuccinylase, proteobacteria GO:0009014|GO:0009089 KEGG: 00300+3.5.1.18|UniPathway: UPA00034 PP4_RS21105 28c93a285ae68f6539ffe40c77b67f26 383 SUPERFAMILY SSF53187 300 382 1.12E-61 T 22-04-2016 PP4_RS21105 28c93a285ae68f6539ffe40c77b67f26 383 SUPERFAMILY SSF53187 7 186 1.12E-61 T 22-04-2016 PP4_RS21105 28c93a285ae68f6539ffe40c77b67f26 383 PANTHER PTHR11014 1 382 9.3E-91 T 22-04-2016 PP4_RS12680 87af40ad5277c275cbd0b59735636eef 458 Pfam PF13440 Polysaccharide biosynthesis protein 40 345 5.7E-44 T 22-04-2016 PP4_RS12680 87af40ad5277c275cbd0b59735636eef 458 PANTHER PTHR30250 6 458 2.3E-32 T 22-04-2016 PP4_RS26555 fb81566fa64e38f676bac4a85869ceae 160 Pfam PF14539 Domain of unknown function (DUF4442) 12 151 1.3E-24 T 22-04-2016 IPR027961 Protein of unknown function DUF4442 PP4_RS26555 fb81566fa64e38f676bac4a85869ceae 160 SUPERFAMILY SSF54637 11 152 2.91E-26 T 22-04-2016 IPR029069 HotDog domain PP4_RS26555 fb81566fa64e38f676bac4a85869ceae 160 Gene3D G3DSA:3.10.129.10 9 156 2.3E-43 T 22-04-2016 IPR029069 HotDog domain PP4_RS15435 7077f54a8ae926028db7ec7c34fe61f3 219 Pfam PF00535 Glycosyl transferase family 2 4 128 3.6E-11 T 22-04-2016 IPR001173 Glycosyltransferase 2-like PP4_RS15435 7077f54a8ae926028db7ec7c34fe61f3 219 PANTHER PTHR22916 1 191 1.5E-15 T 22-04-2016 PP4_RS15435 7077f54a8ae926028db7ec7c34fe61f3 219 SUPERFAMILY SSF53448 2 190 6.0E-30 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS15435 7077f54a8ae926028db7ec7c34fe61f3 219 Gene3D G3DSA:3.90.550.10 2 202 1.2E-19 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS05025 0447ff34b31b9273ad6803a4b7fe3cbc 224 PANTHER PTHR26402 1 222 7.1E-100 T 22-04-2016 PP4_RS05025 0447ff34b31b9273ad6803a4b7fe3cbc 224 SMART SM00448 1 111 4.7E-42 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS05025 0447ff34b31b9273ad6803a4b7fe3cbc 224 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 220 5.8E-27 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS05025 0447ff34b31b9273ad6803a4b7fe3cbc 224 Pfam PF00072 Response regulator receiver domain 4 112 8.1E-28 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS05025 0447ff34b31b9273ad6803a4b7fe3cbc 224 Gene3D G3DSA:1.10.10.10 123 222 3.0E-34 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS05025 0447ff34b31b9273ad6803a4b7fe3cbc 224 TIGRFAM TIGR01387 cztR_silR_copR: heavy metal response regulator 3 220 1.0E-105 T 22-04-2016 IPR006291 Transcriptional regulatory protein PcoR, heavy metal response GO:0003677|GO:0006355 PP4_RS05025 0447ff34b31b9273ad6803a4b7fe3cbc 224 SMART SM00862 145 220 1.6E-26 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS05025 0447ff34b31b9273ad6803a4b7fe3cbc 224 Gene3D G3DSA:3.40.50.2300 1 122 4.0E-39 T 22-04-2016 PP4_RS05025 0447ff34b31b9273ad6803a4b7fe3cbc 224 PANTHER PTHR26402:SF578 1 222 7.1E-100 T 22-04-2016 PP4_RS05025 0447ff34b31b9273ad6803a4b7fe3cbc 224 SUPERFAMILY SSF52172 1 174 6.07E-40 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS18540 c9a2777d43862d6b66fb4c340b354388 393 PANTHER PTHR26402 6 135 3.3E-37 T 22-04-2016 PP4_RS18540 c9a2777d43862d6b66fb4c340b354388 393 PANTHER PTHR26402 269 282 3.3E-37 T 22-04-2016 PP4_RS18540 c9a2777d43862d6b66fb4c340b354388 393 Pfam PF00072 Response regulator receiver domain 9 110 2.7E-29 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS18540 c9a2777d43862d6b66fb4c340b354388 393 SUPERFAMILY SSF52172 5 147 2.13E-40 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS18540 c9a2777d43862d6b66fb4c340b354388 393 SMART SM00448 6 118 1.5E-34 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS18540 c9a2777d43862d6b66fb4c340b354388 393 SMART SM00331 179 390 9.4E-5 T 22-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 PP4_RS18540 c9a2777d43862d6b66fb4c340b354388 393 Gene3D G3DSA:3.40.50.2300 6 147 1.8E-38 T 22-04-2016 PP4_RS18540 c9a2777d43862d6b66fb4c340b354388 393 Pfam PF07228 Stage II sporulation protein E (SpoIIE) 201 390 1.2E-31 T 22-04-2016 IPR001932 PPM-type phosphatase domain GO:0003824 KEGG: 04660+3.1.3.16 PP4_RS16110 708721fba5cac17c856deed3ea62180c 150 SUPERFAMILY SSF55729 1 147 3.27E-24 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS16110 708721fba5cac17c856deed3ea62180c 150 PANTHER PTHR23091 1 132 6.9E-12 T 22-04-2016 PP4_RS16110 708721fba5cac17c856deed3ea62180c 150 Gene3D G3DSA:3.40.630.30 1 148 1.1E-25 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS16110 708721fba5cac17c856deed3ea62180c 150 Pfam PF13673 Acetyltransferase (GNAT) domain 27 147 1.0E-31 T 22-04-2016 IPR000182 GNAT domain GO:0008080 PP4_RS09285 c3b3f360884b8cad44193f96ae6f69a5 297 Gene3D G3DSA:3.40.190.10 164 265 2.1E-22 T 22-04-2016 PP4_RS09285 c3b3f360884b8cad44193f96ae6f69a5 297 Gene3D G3DSA:3.40.190.10 87 151 1.2E-4 T 22-04-2016 PP4_RS09285 c3b3f360884b8cad44193f96ae6f69a5 297 SUPERFAMILY SSF46785 5 90 3.19E-23 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS09285 c3b3f360884b8cad44193f96ae6f69a5 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 2.2E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS09285 c3b3f360884b8cad44193f96ae6f69a5 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 2.2E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS09285 c3b3f360884b8cad44193f96ae6f69a5 297 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 2.2E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS09285 c3b3f360884b8cad44193f96ae6f69a5 297 Gene3D G3DSA:1.10.10.10 5 86 5.7E-26 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS09285 c3b3f360884b8cad44193f96ae6f69a5 297 PANTHER PTHR30537:SF1 1 293 3.3E-172 T 22-04-2016 PP4_RS09285 c3b3f360884b8cad44193f96ae6f69a5 297 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 8.2E-23 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS09285 c3b3f360884b8cad44193f96ae6f69a5 297 Pfam PF03466 LysR substrate binding domain 90 293 2.2E-33 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS09285 c3b3f360884b8cad44193f96ae6f69a5 297 SUPERFAMILY SSF53850 86 293 6.33E-36 T 22-04-2016 PP4_RS09285 c3b3f360884b8cad44193f96ae6f69a5 297 PANTHER PTHR30537 1 293 3.3E-172 T 22-04-2016 PP4_RS25330 191ca23105a0c7697fc49218d7aef4cd 354 SUPERFAMILY SSF51569 3 328 5.42E-107 T 22-04-2016 PP4_RS25330 191ca23105a0c7697fc49218d7aef4cd 354 Pfam PF01116 Fructose-bisphosphate aldolase class-II 5 327 5.9E-93 T 22-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 PP4_RS25330 191ca23105a0c7697fc49218d7aef4cd 354 Gene3D G3DSA:3.20.20.70 1 335 1.4E-109 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS25330 191ca23105a0c7697fc49218d7aef4cd 354 PIRSF PIRSF001359 1 329 1.1E-82 T 22-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 PP4_RS25330 191ca23105a0c7697fc49218d7aef4cd 354 ProSitePatterns PS00806 Fructose-bisphosphate aldolase class-II signature 2. 139 150 - T 22-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 PP4_RS25330 191ca23105a0c7697fc49218d7aef4cd 354 TIGRFAM TIGR01521 FruBisAldo_II_B: fructose-bisphosphate aldolase, class II, Calvin cycle subtype 3 349 2.4E-211 T 22-04-2016 IPR006412 Fructose-bisphosphate aldolase, class II, Calvin cycle subtype GO:0004332|GO:0006096 KEGG: 00010+4.1.2.13|KEGG: 00030+4.1.2.13|KEGG: 00051+4.1.2.13|KEGG: 00680+4.1.2.13|KEGG: 00710+4.1.2.13|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7385|UniPathway: UPA00109 PP4_RS25330 191ca23105a0c7697fc49218d7aef4cd 354 ProSitePatterns PS00602 Fructose-bisphosphate aldolase class-II signature 1. 73 85 - T 22-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 PP4_RS25330 191ca23105a0c7697fc49218d7aef4cd 354 PANTHER PTHR30304 1 349 4.1E-123 T 22-04-2016 PP4_RS25330 191ca23105a0c7697fc49218d7aef4cd 354 TIGRFAM TIGR00167 cbbA: ketose-bisphosphate aldolase 1 329 4.0E-97 T 22-04-2016 IPR000771 Ketose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 PP4_RS00975 f58394fa72df15f6cea9bb91cf17a925 156 PIRSF PIRSF016548 1 155 1.9E-63 T 22-04-2016 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 PP4_RS00975 f58394fa72df15f6cea9bb91cf17a925 156 Pfam PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ 1 145 1.2E-49 T 22-04-2016 IPR007448 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO:0006355 PP4_RS26315 24e110f910df05beb0cf5dbfcaf4a7f2 163 PANTHER PTHR30087 1 162 3.8E-65 T 22-04-2016 PP4_RS26315 24e110f910df05beb0cf5dbfcaf4a7f2 163 PANTHER PTHR30087:SF1 1 162 3.8E-65 T 22-04-2016 PP4_RS26315 24e110f910df05beb0cf5dbfcaf4a7f2 163 Pfam PF04463 Protein of unknown function (DUF523) 9 152 3.3E-42 T 22-04-2016 IPR007553 Domain of unknown function DUF523 PP4_RS25380 aef62cd56fbef6aa22c120e3a014d0d2 148 SUPERFAMILY SSF47175 21 146 1.47E-30 T 22-04-2016 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 PP4_RS25380 aef62cd56fbef6aa22c120e3a014d0d2 148 PIRSF PIRSF000027 7 148 7.0E-41 T 22-04-2016 IPR012127 Cytochrome c prime GO:0005506|GO:0009055|GO:0020037|GO:0042597 PP4_RS25380 aef62cd56fbef6aa22c120e3a014d0d2 148 Gene3D G3DSA:1.20.120.10 21 147 2.5E-31 T 22-04-2016 IPR010980 Cytochrome c/b562 GO:0005506|GO:0009055|GO:0020037|GO:0022900 PP4_RS25380 aef62cd56fbef6aa22c120e3a014d0d2 148 Pfam PF01322 Cytochrome C' 28 146 5.7E-28 T 22-04-2016 IPR002321 Cytochrome c, class II GO:0005506|GO:0009055|GO:0020037 PP4_RS15655 3d76e14b83b063045125054cdba63da6 182 Gene3D G3DSA:3.40.50.10610 18 170 1.8E-16 T 22-04-2016 IPR005586 ABC-type transport auxiliary lipoprotein component PP4_RS15655 3d76e14b83b063045125054cdba63da6 182 SUPERFAMILY SSF159594 25 167 1.07E-23 T 22-04-2016 PP4_RS15655 3d76e14b83b063045125054cdba63da6 182 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 31 167 5.9E-26 T 22-04-2016 IPR005586 ABC-type transport auxiliary lipoprotein component PP4_RS18865 972aedef77fea93698bb737d56334ebe 485 TIGRFAM TIGR00666 PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 65 455 6.3E-63 T 22-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 PP4_RS18865 972aedef77fea93698bb737d56334ebe 485 Gene3D G3DSA:3.40.710.10 240 476 3.1E-63 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS18865 972aedef77fea93698bb737d56334ebe 485 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 355 369 6.5E-21 T 22-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 PP4_RS18865 972aedef77fea93698bb737d56334ebe 485 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 70 89 6.5E-21 T 22-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 PP4_RS18865 972aedef77fea93698bb737d56334ebe 485 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 295 317 6.5E-21 T 22-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 PP4_RS18865 972aedef77fea93698bb737d56334ebe 485 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 370 384 6.5E-21 T 22-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 PP4_RS18865 972aedef77fea93698bb737d56334ebe 485 PRINTS PR00922 D-Ala-D-Ala carboxypeptidase 3 (S13) family signature 432 445 6.5E-21 T 22-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 PP4_RS18865 972aedef77fea93698bb737d56334ebe 485 PANTHER PTHR30023 18 479 1.1E-82 T 22-04-2016 PP4_RS18865 972aedef77fea93698bb737d56334ebe 485 SUPERFAMILY SSF56601 37 475 1.88E-90 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS18865 972aedef77fea93698bb737d56334ebe 485 Pfam PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family 35 455 1.9E-82 T 22-04-2016 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C GO:0004185|GO:0006508 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 PP4_RS18865 972aedef77fea93698bb737d56334ebe 485 PANTHER PTHR30023:SF0 18 479 1.1E-82 T 22-04-2016 PP4_RS09070 f3e22de32737d5b044fa2df2294ff0a8 430 Gene3D G3DSA:2.40.160.10 40 430 2.2E-136 T 22-04-2016 IPR023614 Porin domain PP4_RS09070 f3e22de32737d5b044fa2df2294ff0a8 430 PANTHER PTHR34596 1 430 9.4E-146 T 22-04-2016 PP4_RS09070 f3e22de32737d5b044fa2df2294ff0a8 430 Pfam PF03573 outer membrane porin, OprD family 33 428 1.1E-140 T 22-04-2016 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 PP4_RS02850 0c9f673c0eeabd2d7f767bab84a85f96 166 SUPERFAMILY SSF48013 26 157 1.02E-39 T 22-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 PP4_RS02850 0c9f673c0eeabd2d7f767bab84a85f96 166 Pfam PF01029 NusB family 30 153 1.6E-30 T 22-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 PP4_RS02850 0c9f673c0eeabd2d7f767bab84a85f96 166 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 27 155 1.7E-40 T 22-04-2016 IPR011605 NusB antitermination factor GO:0006353 PP4_RS02850 0c9f673c0eeabd2d7f767bab84a85f96 166 PANTHER PTHR11078 28 160 9.1E-43 T 22-04-2016 IPR011605 NusB antitermination factor GO:0006353 PP4_RS02850 0c9f673c0eeabd2d7f767bab84a85f96 166 Gene3D G3DSA:1.10.940.10 24 159 3.6E-41 T 22-04-2016 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 PP4_RS02850 0c9f673c0eeabd2d7f767bab84a85f96 166 Hamap MF_00073 N utilization substance protein B homolog [nusB]. 26 157 21.158 T 22-04-2016 IPR011605 NusB antitermination factor GO:0006353 PP4_RS01990 06ccad672ea199340cc487af4701be7c 243 PANTHER PTHR11907 16 240 3.7E-60 T 22-04-2016 PP4_RS01990 06ccad672ea199340cc487af4701be7c 243 PANTHER PTHR11907:SF9 16 240 3.7E-60 T 22-04-2016 PP4_RS01990 06ccad672ea199340cc487af4701be7c 243 SUPERFAMILY SSF53271 49 240 1.15E-35 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like PP4_RS01990 06ccad672ea199340cc487af4701be7c 243 Gene3D G3DSA:3.40.50.2020 62 240 8.0E-34 T 22-04-2016 IPR029057 Phosphoribosyltransferase-like PP4_RS01990 06ccad672ea199340cc487af4701be7c 243 Pfam PF00156 Phosphoribosyl transferase domain 185 238 1.3E-8 T 22-04-2016 IPR000836 Phosphoribosyltransferase domain GO:0009116 PP4_RS24715 54f9180721d5b02fdfd99a661561ade5 145 Pfam PF01957 NfeD-like C-terminal, partner-binding 7 143 1.3E-15 T 22-04-2016 IPR002810 NfeD-like, C-terminal domain PP4_RS24715 54f9180721d5b02fdfd99a661561ade5 145 Gene3D G3DSA:2.40.50.140 82 143 7.8E-7 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS03070 381e6e8dcfaa75bcb3d2146ac2325d2c 504 SUPERFAMILY SSF56954 5 468 2.35E-58 T 22-04-2016 PP4_RS03070 381e6e8dcfaa75bcb3d2146ac2325d2c 504 Gene3D G3DSA:1.20.1600.10 57 465 1.9E-36 T 22-04-2016 PP4_RS03070 381e6e8dcfaa75bcb3d2146ac2325d2c 504 PANTHER PTHR30203 61 486 5.7E-27 T 22-04-2016 PP4_RS03070 381e6e8dcfaa75bcb3d2146ac2325d2c 504 Pfam PF02321 Outer membrane efflux protein 61 258 2.2E-17 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PP4_RS03070 381e6e8dcfaa75bcb3d2146ac2325d2c 504 Pfam PF02321 Outer membrane efflux protein 284 465 9.0E-20 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PP4_RS13810 75b5ca32b5790966feeb7d68d508ceb7 146 SUPERFAMILY SSF46785 4 58 2.56E-12 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS13810 75b5ca32b5790966feeb7d68d508ceb7 146 ProSitePatterns PS00519 AsnC-type HTH domain signature. 22 48 - T 22-04-2016 IPR019885 Transcription regulator HTH, AsnC-type, conserved site PP4_RS13810 75b5ca32b5790966feeb7d68d508ceb7 146 SMART SM00344 4 109 5.0E-14 T 22-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 PP4_RS13810 75b5ca32b5790966feeb7d68d508ceb7 146 PANTHER PTHR30154 1 143 1.9E-22 T 22-04-2016 PP4_RS13810 75b5ca32b5790966feeb7d68d508ceb7 146 Gene3D G3DSA:3.30.70.920 65 142 6.2E-9 T 22-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PP4_RS13810 75b5ca32b5790966feeb7d68d508ceb7 146 Pfam PF13412 Winged helix-turn-helix DNA-binding 4 51 1.1E-12 T 22-04-2016 PP4_RS13810 75b5ca32b5790966feeb7d68d508ceb7 146 Pfam PF01037 Lrp/AsnC ligand binding domain 82 138 7.1E-8 T 22-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PP4_RS13810 75b5ca32b5790966feeb7d68d508ceb7 146 Gene3D G3DSA:1.10.10.10 3 55 6.2E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS13810 75b5ca32b5790966feeb7d68d508ceb7 146 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 31 50 6.4E-13 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS13810 75b5ca32b5790966feeb7d68d508ceb7 146 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 4 20 6.4E-13 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS13810 75b5ca32b5790966feeb7d68d508ceb7 146 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 20 31 6.4E-13 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS13810 75b5ca32b5790966feeb7d68d508ceb7 146 SUPERFAMILY SSF54909 66 142 4.16E-10 T 22-04-2016 IPR011008 Dimeric alpha-beta barrel PP4_RS21390 863cd783f26baed09df124c1cb08bba5 250 PANTHER PTHR32125 1 231 4.1E-116 T 22-04-2016 PP4_RS21390 863cd783f26baed09df124c1cb08bba5 250 SUPERFAMILY SSF75217 4 247 3.92E-101 T 22-04-2016 IPR029028 Alpha/beta knot methyltransferases PP4_RS21390 863cd783f26baed09df124c1cb08bba5 250 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 250 114.957 T 22-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 PP4_RS21390 863cd783f26baed09df124c1cb08bba5 250 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 26 223 2.4E-63 T 22-04-2016 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 PP4_RS21390 863cd783f26baed09df124c1cb08bba5 250 Gene3D G3DSA:3.40.1280.10 4 163 1.5E-68 T 22-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PP4_RS21390 863cd783f26baed09df124c1cb08bba5 250 PANTHER PTHR32125:SF1 1 231 4.1E-116 T 22-04-2016 PP4_RS21390 863cd783f26baed09df124c1cb08bba5 250 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 5 235 9.7E-99 T 22-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 PP4_RS21390 863cd783f26baed09df124c1cb08bba5 250 Gene3D G3DSA:1.10.1270.20 166 246 6.8E-34 T 22-04-2016 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 PP4_RS21390 863cd783f26baed09df124c1cb08bba5 250 PIRSF PIRSF000386 4 248 1.7E-99 T 22-04-2016 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 KEGG: 00340+2.1.1.22|MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 PP4_RS15530 e156d7698820579a05d26d4bd01dc2c7 484 Pfam PF06863 Protein of unknown function (DUF1254) 89 220 3.1E-33 T 22-04-2016 IPR010679 Domain of unknown function DUF1254 PP4_RS15530 e156d7698820579a05d26d4bd01dc2c7 484 SUPERFAMILY SSF160935 31 482 4.58E-111 T 22-04-2016 PP4_RS15530 e156d7698820579a05d26d4bd01dc2c7 484 Gene3D G3DSA:2.60.120.600 315 483 3.0E-52 T 22-04-2016 IPR010621 Domain of unknown function DUF1214 PP4_RS15530 e156d7698820579a05d26d4bd01dc2c7 484 PANTHER PTHR36509:SF2 36 484 3.4E-76 T 22-04-2016 PP4_RS15530 e156d7698820579a05d26d4bd01dc2c7 484 PANTHER PTHR36509 36 484 3.4E-76 T 22-04-2016 PP4_RS15530 e156d7698820579a05d26d4bd01dc2c7 484 Gene3D G3DSA:2.60.40.1610 103 226 1.6E-17 T 22-04-2016 IPR010679 Domain of unknown function DUF1254 PP4_RS15530 e156d7698820579a05d26d4bd01dc2c7 484 Pfam PF06742 Protein of unknown function (DUF1214) 359 467 2.7E-35 T 22-04-2016 IPR010621 Domain of unknown function DUF1214 PP4_RS01220 cd3a83cf4c8a43989c9090f22a7ca106 214 PANTHER PTHR30450:SF1 3 214 5.0E-111 T 22-04-2016 PP4_RS01220 cd3a83cf4c8a43989c9090f22a7ca106 214 Gene3D G3DSA:1.10.3720.10 3 213 2.2E-43 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS01220 cd3a83cf4c8a43989c9090f22a7ca106 214 SUPERFAMILY SSF161098 4 198 1.96E-48 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS01220 cd3a83cf4c8a43989c9090f22a7ca106 214 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 47 214 2.1E-24 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS01220 cd3a83cf4c8a43989c9090f22a7ca106 214 PANTHER PTHR30450 3 214 5.0E-111 T 22-04-2016 PP4_RS03020 0c2e1d8e5253b86ca935bdb940de3cd2 169 Pfam PF14316 Domain of unknown function (DUF4381) 11 163 1.5E-31 T 22-04-2016 IPR025489 Protein of unknown function (DUF4381 PP4_RS14910 e63d8bba9c821a384e63a16598f47b9f 188 Pfam PF04973 Nicotinamide mononucleotide transporter 4 181 2.9E-51 T 22-04-2016 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 PP4_RS14910 e63d8bba9c821a384e63a16598f47b9f 188 PANTHER PTHR36122:SF1 1 182 3.8E-61 T 22-04-2016 PP4_RS14910 e63d8bba9c821a384e63a16598f47b9f 188 TIGRFAM TIGR01528 NMN_trans_PnuC: nicotinamide mononucleotide transporter PnuC 4 181 7.2E-26 T 22-04-2016 IPR006419 Nicotinamide mononucleotide transporter PnuC GO:0016020|GO:0034257|GO:0034258 PP4_RS14910 e63d8bba9c821a384e63a16598f47b9f 188 PANTHER PTHR36122 1 182 3.8E-61 T 22-04-2016 PP4_RS01145 f218b000dc258a07eaa3ddfccc7a533c 107 Pfam PF06155 Protein of unknown function (DUF971) 13 88 1.4E-20 T 22-04-2016 IPR010376 Domain of unknown function DUF971 Reactome: REACT_13|UniPathway: UPA00118 PP4_RS03085 9815838d80a57535528aa993bd00be39 446 SUPERFAMILY SSF111369 207 395 4.05E-10 T 22-04-2016 PP4_RS03085 9815838d80a57535528aa993bd00be39 446 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 209 382 2.0E-9 T 22-04-2016 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain PP4_RS03085 9815838d80a57535528aa993bd00be39 446 PANTHER PTHR32347:SF12 249 425 3.4E-13 T 22-04-2016 PP4_RS03085 9815838d80a57535528aa993bd00be39 446 PANTHER PTHR32347 249 425 3.4E-13 T 22-04-2016 PP4_RS03085 9815838d80a57535528aa993bd00be39 446 Gene3D G3DSA:2.40.50.100 215 245 1.1E-7 T 22-04-2016 PP4_RS03085 9815838d80a57535528aa993bd00be39 446 Gene3D G3DSA:2.40.50.100 306 337 1.1E-7 T 22-04-2016 PP4_RS08750 6ca3354ee9e831090073ab1a13d98d8d 501 PANTHER PTHR30618 1 479 8.1E-185 T 22-04-2016 PP4_RS08750 6ca3354ee9e831090073ab1a13d98d8d 501 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 38 464 7.1E-92 T 22-04-2016 IPR001248 Purine-cytosine permease GO:0005215|GO:0016020|GO:0055085 PP4_RS08750 6ca3354ee9e831090073ab1a13d98d8d 501 PANTHER PTHR30618:SF0 1 479 8.1E-185 T 22-04-2016 PP4_RS26390 cd2aefe131f77c226f7e633da66937a4 239 PANTHER PTHR30625 15 237 5.0E-54 T 22-04-2016 PP4_RS26390 cd2aefe131f77c226f7e633da66937a4 239 PANTHER PTHR30625:SF3 15 237 5.0E-54 T 22-04-2016 PP4_RS26390 cd2aefe131f77c226f7e633da66937a4 239 Pfam PF01618 MotA/TolQ/ExbB proton channel family 78 199 9.1E-36 T 22-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 PP4_RS21245 33351864f758655e9ecafd92f70f44db 280 SUPERFAMILY SSF75620 4 277 4.05E-118 T 22-04-2016 PP4_RS21245 33351864f758655e9ecafd92f70f44db 280 PANTHER PTHR11075:SF6 1 278 5.1E-141 T 22-04-2016 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 PP4_RS21245 33351864f758655e9ecafd92f70f44db 280 SMART SM00937 1 110 1.1E-49 T 22-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 PP4_RS21245 33351864f758655e9ecafd92f70f44db 280 TIGRFAM TIGR00020 prfB: peptide chain release factor 2 1 278 1.9E-139 T 22-04-2016 IPR004374 Peptide chain release factor 2 GO:0005737|GO:0006415|GO:0016149 PP4_RS21245 33351864f758655e9ecafd92f70f44db 280 Pfam PF03462 PCRF domain 6 135 5.7E-44 T 22-04-2016 IPR005139 Peptide chain release factor GO:0005737|GO:0006415|GO:0016149 PP4_RS21245 33351864f758655e9ecafd92f70f44db 280 Pfam PF00472 RF-1 domain 144 252 9.2E-40 T 22-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 PP4_RS21245 33351864f758655e9ecafd92f70f44db 280 Gene3D G3DSA:3.30.160.20 143 220 1.1E-38 T 22-04-2016 IPR014720 Double-stranded RNA-binding domain PP4_RS21245 33351864f758655e9ecafd92f70f44db 280 PANTHER PTHR11075 1 278 5.1E-141 T 22-04-2016 PP4_RS21245 33351864f758655e9ecafd92f70f44db 280 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 160 176 - T 22-04-2016 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 PP4_RS08670 ac94fc30585eeab73f0ef7427757eb09 358 TIGRFAM TIGR01414 autotrans_barl: outer membrane autotransporter barrel domain 38 358 1.4E-32 T 22-04-2016 IPR006315 Outer membrane autotransporter barrel GO:0019867 PP4_RS08670 ac94fc30585eeab73f0ef7427757eb09 358 SUPERFAMILY SSF103515 65 358 2.22E-30 T 22-04-2016 IPR005546 Autotransporter beta-domain PP4_RS08670 ac94fc30585eeab73f0ef7427757eb09 358 Gene3D G3DSA:2.40.128.130 60 358 4.1E-46 T 22-04-2016 IPR005546 Autotransporter beta-domain PP4_RS08670 ac94fc30585eeab73f0ef7427757eb09 358 SMART SM00869 86 345 7.6E-18 T 22-04-2016 IPR005546 Autotransporter beta-domain PP4_RS08670 ac94fc30585eeab73f0ef7427757eb09 358 Pfam PF03797 Autotransporter beta-domain 88 338 4.9E-43 T 22-04-2016 IPR005546 Autotransporter beta-domain PP4_RS16340 b53103f80ca731d9c84b1e0fef857fed 271 Gene3D G3DSA:3.20.20.150 6 268 1.3E-34 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PP4_RS16340 b53103f80ca731d9c84b1e0fef857fed 271 Pfam PF01261 Xylose isomerase-like TIM barrel 22 221 5.9E-13 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PP4_RS16340 b53103f80ca731d9c84b1e0fef857fed 271 SUPERFAMILY SSF51658 5 269 1.04E-59 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PP4_RS16340 b53103f80ca731d9c84b1e0fef857fed 271 PANTHER PTHR12110:SF26 1 269 1.3E-80 T 22-04-2016 PP4_RS16340 b53103f80ca731d9c84b1e0fef857fed 271 PANTHER PTHR12110 1 269 1.3E-80 T 22-04-2016 PP4_RS21175 079f7028ff1b78f19cd4d86fc7b9d609 289 Pfam PF01904 Protein of unknown function DUF72 25 262 2.0E-52 T 22-04-2016 IPR002763 Protein of unknown function DUF72 PP4_RS21175 079f7028ff1b78f19cd4d86fc7b9d609 289 SUPERFAMILY SSF117396 6 264 3.4E-66 T 22-04-2016 IPR002763 Protein of unknown function DUF72 PP4_RS21175 079f7028ff1b78f19cd4d86fc7b9d609 289 PANTHER PTHR30348:SF3 9 284 1.0E-75 T 22-04-2016 PP4_RS21175 079f7028ff1b78f19cd4d86fc7b9d609 289 PANTHER PTHR30348 9 284 1.0E-75 T 22-04-2016 PP4_RS21175 079f7028ff1b78f19cd4d86fc7b9d609 289 Gene3D G3DSA:3.20.20.410 4 275 4.9E-67 T 22-04-2016 IPR002763 Protein of unknown function DUF72 PP4_RS25020 f622b563f064e9f9ec7525802af820f6 476 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 180 398 4.1E-46 T 22-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 PP4_RS25020 f622b563f064e9f9ec7525802af820f6 476 PANTHER PTHR30404 1 432 2.6E-114 T 22-04-2016 PP4_RS25020 f622b563f064e9f9ec7525802af820f6 476 SUPERFAMILY SSF54106 426 469 5.75E-9 T 22-04-2016 IPR018392 LysM domain PP4_RS25020 f622b563f064e9f9ec7525802af820f6 476 SMART SM00257 426 469 2.5E-11 T 22-04-2016 IPR018392 LysM domain PP4_RS25020 f622b563f064e9f9ec7525802af820f6 476 Pfam PF01476 LysM domain 427 469 3.8E-9 T 22-04-2016 IPR018392 LysM domain PP4_RS25020 f622b563f064e9f9ec7525802af820f6 476 SUPERFAMILY SSF53187 178 274 1.19E-53 T 22-04-2016 PP4_RS25020 f622b563f064e9f9ec7525802af820f6 476 SUPERFAMILY SSF53187 325 402 1.19E-53 T 22-04-2016 PP4_RS25020 f622b563f064e9f9ec7525802af820f6 476 Pfam PF11741 AMIN domain 30 128 4.9E-25 T 22-04-2016 IPR021731 AMIN domain PP4_RS25020 f622b563f064e9f9ec7525802af820f6 476 PANTHER PTHR30404:SF1 1 432 2.6E-114 T 22-04-2016 PP4_RS25020 f622b563f064e9f9ec7525802af820f6 476 SMART SM00646 240 398 2.8E-69 T 22-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 PP4_RS25020 f622b563f064e9f9ec7525802af820f6 476 Gene3D G3DSA:3.10.350.10 425 470 4.2E-13 T 22-04-2016 IPR018392 LysM domain PP4_RS25020 f622b563f064e9f9ec7525802af820f6 476 Gene3D G3DSA:3.40.630.40 178 275 4.5E-59 T 22-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 PP4_RS25020 f622b563f064e9f9ec7525802af820f6 476 Gene3D G3DSA:3.40.630.40 326 402 4.5E-59 T 22-04-2016 IPR002508 Cell wall hydrolase/autolysin, catalytic GO:0008745|GO:0009253 PP4_RS16980 63928d2f9e083450403a082b9f6c1a10 168 PANTHER PTHR30173:SF9 12 161 3.5E-31 T 22-04-2016 PP4_RS16980 63928d2f9e083450403a082b9f6c1a10 168 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 11 161 7.8E-19 T 22-04-2016 IPR014284 RNA polymerase sigma-70 like domain GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS16980 63928d2f9e083450403a082b9f6c1a10 168 SUPERFAMILY SSF88946 10 96 7.06E-14 T 22-04-2016 IPR013325 RNA polymerase sigma factor, region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS16980 63928d2f9e083450403a082b9f6c1a10 168 Gene3D G3DSA:1.10.10.10 110 161 5.0E-10 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16980 63928d2f9e083450403a082b9f6c1a10 168 Pfam PF04542 Sigma-70 region 2 12 78 7.5E-12 T 22-04-2016 IPR007627 RNA polymerase sigma-70 region 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS16980 63928d2f9e083450403a082b9f6c1a10 168 PANTHER PTHR30173 12 161 3.5E-31 T 22-04-2016 PP4_RS16980 63928d2f9e083450403a082b9f6c1a10 168 SUPERFAMILY SSF88659 101 162 1.22E-10 T 22-04-2016 IPR013324 RNA polymerase sigma factor, region 3/4 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS16980 63928d2f9e083450403a082b9f6c1a10 168 Gene3D G3DSA:1.10.1740.10 7 79 3.1E-12 T 22-04-2016 PP4_RS16980 63928d2f9e083450403a082b9f6c1a10 168 Pfam PF08281 Sigma-70, region 4 110 161 6.9E-12 T 22-04-2016 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 PP4_RS17875 ec0d3b1eafb677f652c036400d553e8e 358 Gene3D G3DSA:2.130.10.10 54 326 7.4E-26 T 22-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 PP4_RS17875 ec0d3b1eafb677f652c036400d553e8e 358 Pfam PF14870 Photosynthesis system II assembly factor YCF48 164 237 1.2E-9 T 22-04-2016 IPR028203 Photosynthesis system II assembly factor Ycf48/Hcf136-like domain PP4_RS17875 ec0d3b1eafb677f652c036400d553e8e 358 Pfam PF14870 Photosynthesis system II assembly factor YCF48 61 122 2.7E-6 T 22-04-2016 IPR028203 Photosynthesis system II assembly factor Ycf48/Hcf136-like domain PP4_RS17875 ec0d3b1eafb677f652c036400d553e8e 358 SUPERFAMILY SSF50939 43 328 3.73E-33 T 22-04-2016 IPR011040 Sialidases PP4_RS14535 bf30cefda78035c9673cfce6bb0aae79 348 Gene3D G3DSA:3.40.50.150 164 330 7.8E-32 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS14535 bf30cefda78035c9673cfce6bb0aae79 348 SUPERFAMILY SSF53335 128 337 6.44E-31 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS14535 bf30cefda78035c9673cfce6bb0aae79 348 SUPERFAMILY SSF46785 19 93 5.1E-8 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS14535 bf30cefda78035c9673cfce6bb0aae79 348 PANTHER PTHR10108 300 339 2.0E-20 T 22-04-2016 PP4_RS14535 bf30cefda78035c9673cfce6bb0aae79 348 PANTHER PTHR10108 151 280 2.0E-20 T 22-04-2016 PP4_RS14535 bf30cefda78035c9673cfce6bb0aae79 348 Gene3D G3DSA:1.10.10.10 29 83 8.2E-7 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS14535 bf30cefda78035c9673cfce6bb0aae79 348 Pfam PF13847 Methyltransferase domain 168 284 5.3E-17 T 22-04-2016 IPR025714 Methyltransferase domain PP4_RS13590 9f0e06de7ddc2bdf102ebf53da970d23 291 SUPERFAMILY SSF100950 2 271 1.95E-73 T 22-04-2016 PP4_RS13590 9f0e06de7ddc2bdf102ebf53da970d23 291 PANTHER PTHR13707 1 250 1.1E-52 T 22-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 PP4_RS13590 9f0e06de7ddc2bdf102ebf53da970d23 291 Gene3D G3DSA:3.40.1080.10 155 281 6.3E-76 T 22-04-2016 PP4_RS13590 9f0e06de7ddc2bdf102ebf53da970d23 291 Gene3D G3DSA:3.40.1080.10 2 116 6.3E-76 T 22-04-2016 PP4_RS13590 9f0e06de7ddc2bdf102ebf53da970d23 291 SMART SM00882 4 225 7.1E-35 T 22-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 PP4_RS13590 9f0e06de7ddc2bdf102ebf53da970d23 291 PANTHER PTHR13707:SF34 1 250 1.1E-52 T 22-04-2016 PP4_RS13590 9f0e06de7ddc2bdf102ebf53da970d23 291 Pfam PF01144 Coenzyme A transferase 5 219 2.2E-35 T 22-04-2016 IPR004165 Coenzyme A transferase family I GO:0008152|GO:0008410 PP4_RS05945 b50982d01493d8c57d8a27e45a62c685 224 PANTHER PTHR11587:SF3 1 223 9.3E-113 T 22-04-2016 PP4_RS05945 b50982d01493d8c57d8a27e45a62c685 224 SUPERFAMILY SSF52402 4 223 2.01E-64 T 22-04-2016 PP4_RS05945 b50982d01493d8c57d8a27e45a62c685 224 PIRSF PIRSF006293 2 224 1.3E-80 T 22-04-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 PP4_RS05945 b50982d01493d8c57d8a27e45a62c685 224 TIGRFAM TIGR00364 TIGR00364: queuosine biosynthesis protein QueC 6 208 2.0E-63 T 22-04-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 PP4_RS05945 b50982d01493d8c57d8a27e45a62c685 224 Pfam PF06508 Queuosine biosynthesis protein QueC 5 215 3.3E-81 T 22-04-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 PP4_RS05945 b50982d01493d8c57d8a27e45a62c685 224 PANTHER PTHR11587 1 223 9.3E-113 T 22-04-2016 PP4_RS05945 b50982d01493d8c57d8a27e45a62c685 224 Gene3D G3DSA:3.40.50.620 3 223 4.2E-81 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS05945 b50982d01493d8c57d8a27e45a62c685 224 Hamap MF_01633 7-cyano-7-deazaguanine synthase [queC]. 4 221 56.846 T 22-04-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 PP4_RS02105 b44bd3b6960fa8266b696bf6d0b61b00 153 SUPERFAMILY SSF46785 8 68 8.03E-12 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS02105 b44bd3b6960fa8266b696bf6d0b61b00 153 PANTHER PTHR30154 1 145 1.8E-37 T 22-04-2016 PP4_RS02105 b44bd3b6960fa8266b696bf6d0b61b00 153 Gene3D G3DSA:1.10.10.10 7 59 6.1E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS02105 b44bd3b6960fa8266b696bf6d0b61b00 153 Pfam PF13404 AsnC-type helix-turn-helix domain 9 50 1.1E-14 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS02105 b44bd3b6960fa8266b696bf6d0b61b00 153 Pfam PF01037 Lrp/AsnC ligand binding domain 75 144 2.7E-15 T 22-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PP4_RS02105 b44bd3b6960fa8266b696bf6d0b61b00 153 SUPERFAMILY SSF54909 70 150 1.29E-16 T 22-04-2016 IPR011008 Dimeric alpha-beta barrel PP4_RS02105 b44bd3b6960fa8266b696bf6d0b61b00 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 9 25 3.5E-11 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS02105 b44bd3b6960fa8266b696bf6d0b61b00 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 25 36 3.5E-11 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS02105 b44bd3b6960fa8266b696bf6d0b61b00 153 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 36 55 3.5E-11 T 22-04-2016 IPR000485 AsnC-type HTH domain GO:0006355|GO:0043565 PP4_RS02105 b44bd3b6960fa8266b696bf6d0b61b00 153 SMART SM00344 9 115 2.0E-22 T 22-04-2016 IPR019888 Transcription regulator AsnC-type GO:0003700|GO:0005622|GO:0006355|GO:0043565 PP4_RS02105 b44bd3b6960fa8266b696bf6d0b61b00 153 Gene3D G3DSA:3.30.70.920 73 145 7.5E-20 T 22-04-2016 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain PP4_RS19125 e1886d6a2d0f0fc6d64aa2a3791c99a7 314 Pfam PF01882 Protein of unknown function DUF58 52 136 7.5E-19 T 22-04-2016 IPR002881 Domain of unknown function DUF58 PP4_RS19125 e1886d6a2d0f0fc6d64aa2a3791c99a7 314 PANTHER PTHR33608 10 314 3.1E-115 T 22-04-2016 PP4_RS19125 e1886d6a2d0f0fc6d64aa2a3791c99a7 314 PANTHER PTHR33608:SF6 10 314 3.1E-115 T 22-04-2016 PP4_RS14215 8dad8ed04f2a8665e8b9137d7c11a25b 73 Pfam PF06906 Protein of unknown function (DUF1272) 1 57 7.3E-28 T 22-04-2016 IPR010696 Protein of unknown function DUF1272 PP4_RS20820 8831ebd6aed1477fb22922a57c5169e2 308 PANTHER PTHR30126 3 307 6.2E-105 T 22-04-2016 PP4_RS20820 8831ebd6aed1477fb22922a57c5169e2 308 Gene3D G3DSA:1.10.10.10 3 85 4.4E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS20820 8831ebd6aed1477fb22922a57c5169e2 308 Gene3D G3DSA:3.40.190.10 91 175 6.6E-16 T 22-04-2016 PP4_RS20820 8831ebd6aed1477fb22922a57c5169e2 308 Gene3D G3DSA:3.40.190.10 176 258 5.2E-24 T 22-04-2016 PP4_RS20820 8831ebd6aed1477fb22922a57c5169e2 308 PANTHER PTHR30126:SF11 3 307 6.2E-105 T 22-04-2016 PP4_RS20820 8831ebd6aed1477fb22922a57c5169e2 308 SUPERFAMILY SSF46785 1 105 1.93E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS20820 8831ebd6aed1477fb22922a57c5169e2 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 5 63 1.1E-16 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS20820 8831ebd6aed1477fb22922a57c5169e2 308 Pfam PF03466 LysR substrate binding domain 91 291 1.2E-55 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS20820 8831ebd6aed1477fb22922a57c5169e2 308 SUPERFAMILY SSF53850 91 296 8.01E-50 T 22-04-2016 PP4_RS26985 437e77a977c3a02bb97a5112f96e4931 206 PANTHER PTHR23117:SF13 6 197 7.5E-94 T 22-04-2016 PP4_RS26985 437e77a977c3a02bb97a5112f96e4931 206 Hamap MF_00328 Guanylate kinase [gmk]. 4 187 36.681 T 22-04-2016 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 PP4_RS26985 437e77a977c3a02bb97a5112f96e4931 206 Gene3D G3DSA:3.30.63.10 35 87 4.3E-29 T 22-04-2016 PP4_RS26985 437e77a977c3a02bb97a5112f96e4931 206 ProSitePatterns PS00856 Guanylate kinase-like signature. 40 57 - T 22-04-2016 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 PP4_RS26985 437e77a977c3a02bb97a5112f96e4931 206 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 6 184 2.3E-74 T 22-04-2016 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 PP4_RS26985 437e77a977c3a02bb97a5112f96e4931 206 SUPERFAMILY SSF52540 4 185 1.36E-68 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26985 437e77a977c3a02bb97a5112f96e4931 206 Pfam PF00625 Guanylate kinase 7 185 6.3E-55 T 22-04-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit PP4_RS26985 437e77a977c3a02bb97a5112f96e4931 206 SMART SM00072 5 187 5.2E-66 T 22-04-2016 IPR008145 Guanylate kinase/L-type calcium channel beta subunit PP4_RS26985 437e77a977c3a02bb97a5112f96e4931 206 PANTHER PTHR23117 6 197 7.5E-94 T 22-04-2016 PP4_RS26985 437e77a977c3a02bb97a5112f96e4931 206 Gene3D G3DSA:3.40.50.300 88 203 8.1E-49 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS26985 437e77a977c3a02bb97a5112f96e4931 206 Gene3D G3DSA:3.40.50.300 2 28 8.1E-49 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS22750 9f98a0d26ff69a163c674544782d93bc 271 PANTHER PTHR22726 34 269 3.6E-67 T 22-04-2016 PP4_RS22750 9f98a0d26ff69a163c674544782d93bc 271 Pfam PF01435 Peptidase family M48 74 257 9.0E-35 T 22-04-2016 IPR001915 Peptidase M48 GO:0004222|GO:0006508 PP4_RS22750 9f98a0d26ff69a163c674544782d93bc 271 Gene3D G3DSA:3.30.2010.10 71 158 2.8E-15 T 22-04-2016 PP4_RS17630 534d156dacefeff19c8a4354e795dfc5 255 Pfam PF05235 CHAD domain 18 213 1.2E-21 T 22-04-2016 IPR007899 CHAD domain PP4_RS17630 534d156dacefeff19c8a4354e795dfc5 255 SMART SM00880 11 252 5.1E-37 T 22-04-2016 IPR007899 CHAD domain PP4_RS15310 53ce470a76c0662159b12d62573f7cdf 120 SUPERFAMILY SSF52091 1 115 1.96E-16 T 22-04-2016 IPR002645 STAS domain PP4_RS15310 53ce470a76c0662159b12d62573f7cdf 120 Pfam PF01740 STAS domain 27 95 2.2E-5 T 22-04-2016 IPR002645 STAS domain PP4_RS15310 53ce470a76c0662159b12d62573f7cdf 120 PANTHER PTHR33745 1 120 6.3E-44 T 22-04-2016 PP4_RS15310 53ce470a76c0662159b12d62573f7cdf 120 Gene3D G3DSA:3.30.750.24 4 96 3.5E-10 T 22-04-2016 IPR002645 STAS domain PP4_RS01055 12108167d6ea403b41c8506b32fc1ec8 244 SUPERFAMILY SSF57997 110 233 1.57E-5 T 22-04-2016 PP4_RS02280 7d18fec737011809a5a79131fc462b0c 493 PRINTS PR00095 Anthranilate synthase component I signature 418 432 1.2E-25 T 22-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 PP4_RS02280 7d18fec737011809a5a79131fc462b0c 493 PRINTS PR00095 Anthranilate synthase component I signature 338 351 1.2E-25 T 22-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 PP4_RS02280 7d18fec737011809a5a79131fc462b0c 493 PRINTS PR00095 Anthranilate synthase component I signature 324 337 1.2E-25 T 22-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 PP4_RS02280 7d18fec737011809a5a79131fc462b0c 493 PRINTS PR00095 Anthranilate synthase component I signature 433 447 1.2E-25 T 22-04-2016 IPR019999 Anthranilate synthase component I-like GO:0009058 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 PP4_RS02280 7d18fec737011809a5a79131fc462b0c 493 Gene3D G3DSA:3.60.120.10 13 490 5.3E-176 T 22-04-2016 IPR005801 ADC synthase GO:0009058 PP4_RS02280 7d18fec737011809a5a79131fc462b0c 493 SUPERFAMILY SSF56322 14 485 1.96E-158 T 22-04-2016 IPR005801 ADC synthase GO:0009058 PP4_RS02280 7d18fec737011809a5a79131fc462b0c 493 PANTHER PTHR11236 1 493 7.5E-239 T 22-04-2016 PP4_RS02280 7d18fec737011809a5a79131fc462b0c 493 Pfam PF04715 Anthranilate synthase component I, N terminal region 28 167 2.3E-33 T 22-04-2016 IPR006805 Anthranilate synthase component I, N-terminal GO:0009058|GO:0016833 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 PP4_RS02280 7d18fec737011809a5a79131fc462b0c 493 Pfam PF00425 chorismate binding enzyme 223 476 2.2E-97 T 22-04-2016 IPR015890 Chorismate-utilising enzyme, C-terminal PP4_RS02280 7d18fec737011809a5a79131fc462b0c 493 PANTHER PTHR11236:SF9 1 493 7.5E-239 T 22-04-2016 PP4_RS02280 7d18fec737011809a5a79131fc462b0c 493 TIGRFAM TIGR00564 trpE_most: anthranilate synthase component I 26 484 6.3E-173 T 22-04-2016 IPR005256 Anthranilate synthase component I, PabB-like GO:0000162|GO:0004049 KEGG: 00400+4.1.3.27|MetaCyc: PWY-5958|MetaCyc: PWY-6660|MetaCyc: PWY-6661|UniPathway: UPA00035 PP4_RS01480 966f0bd8a8340c626def37315941921f 439 PANTHER PTHR34596 1 439 4.6E-133 T 22-04-2016 PP4_RS01480 966f0bd8a8340c626def37315941921f 439 Gene3D G3DSA:2.40.160.10 33 439 7.2E-130 T 22-04-2016 IPR023614 Porin domain PP4_RS01480 966f0bd8a8340c626def37315941921f 439 Pfam PF03573 outer membrane porin, OprD family 28 438 4.9E-138 T 22-04-2016 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 PP4_RS13895 7dff86fcee68b5385a4e6c2135e722a0 321 Gene3D G3DSA:1.10.3720.10 117 318 6.2E-51 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS13895 7dff86fcee68b5385a4e6c2135e722a0 321 PANTHER PTHR30614 116 321 1.3E-79 T 22-04-2016 PP4_RS13895 7dff86fcee68b5385a4e6c2135e722a0 321 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 140 317 3.5E-23 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS13895 7dff86fcee68b5385a4e6c2135e722a0 321 SUPERFAMILY SSF161098 117 317 8.5E-46 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS13895 7dff86fcee68b5385a4e6c2135e722a0 321 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 116 211 4.1E-25 T 22-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PP4_RS16745 893769f6e1382a32d519a3e778f33508 352 SUPERFAMILY SSF53850 69 159 1.11E-16 T 22-04-2016 PP4_RS16745 893769f6e1382a32d519a3e778f33508 352 SUPERFAMILY SSF53850 187 334 1.11E-16 T 22-04-2016 PP4_RS16745 893769f6e1382a32d519a3e778f33508 352 Gene3D G3DSA:3.40.190.10 90 257 1.2E-13 T 22-04-2016 PP4_RS03140 8ff97b76d7a62b490bf200a7a79e6e3f 152 Gene3D G3DSA:3.40.630.30 1 145 7.3E-25 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS03140 8ff97b76d7a62b490bf200a7a79e6e3f 152 SUPERFAMILY SSF55729 1 147 7.26E-33 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS03140 8ff97b76d7a62b490bf200a7a79e6e3f 152 PANTHER PTHR23091 1 149 5.9E-17 T 22-04-2016 PP4_RS03140 8ff97b76d7a62b490bf200a7a79e6e3f 152 Pfam PF00583 Acetyltransferase (GNAT) family 56 137 3.6E-10 T 22-04-2016 IPR000182 GNAT domain GO:0008080 PP4_RS09630 4838ea6c969a4e8e4cec6c380e403e7c 435 SUPERFAMILY SSF103473 11 428 1.31E-78 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS09630 4838ea6c969a4e8e4cec6c380e403e7c 435 PANTHER PTHR11662 11 427 1.4E-137 T 22-04-2016 PP4_RS09630 4838ea6c969a4e8e4cec6c380e403e7c 435 PANTHER PTHR11662:SF3 11 427 1.4E-137 T 22-04-2016 PP4_RS09630 4838ea6c969a4e8e4cec6c380e403e7c 435 Gene3D G3DSA:1.20.1250.20 247 426 7.2E-21 T 22-04-2016 PP4_RS09630 4838ea6c969a4e8e4cec6c380e403e7c 435 Gene3D G3DSA:1.20.1250.20 22 224 8.2E-46 T 22-04-2016 PP4_RS09630 4838ea6c969a4e8e4cec6c380e403e7c 435 Pfam PF07690 Major Facilitator Superfamily 32 394 2.5E-48 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS07185 35c77a4d9e47ad7e3088996432e5c52b 110 TIGRFAM TIGR00205 fliE: flagellar hook-basal body complex protein FliE 36 109 2.7E-26 T 22-04-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 PP4_RS07185 35c77a4d9e47ad7e3088996432e5c52b 110 Pfam PF02049 Flagellar hook-basal body complex protein FliE 33 110 6.1E-31 T 22-04-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 PP4_RS07185 35c77a4d9e47ad7e3088996432e5c52b 110 Hamap MF_00724 Flagellar hook-basal body complex protein FliE [fliE]. 3 110 17.961 T 22-04-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 PP4_RS07185 35c77a4d9e47ad7e3088996432e5c52b 110 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 95 108 1.4E-17 T 22-04-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 PP4_RS07185 35c77a4d9e47ad7e3088996432e5c52b 110 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 74 90 1.4E-17 T 22-04-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 PP4_RS07185 35c77a4d9e47ad7e3088996432e5c52b 110 PRINTS PR01006 Flagellar hook-basal body complex protein FliE signature 39 55 1.4E-17 T 22-04-2016 IPR001624 Flagellar hook-basal body complex protein FliE GO:0003774|GO:0005198|GO:0009288|GO:0071973 PP4_RS07185 35c77a4d9e47ad7e3088996432e5c52b 110 PANTHER PTHR34653 40 110 1.6E-24 T 22-04-2016 PP4_RS20030 f6d8c813f487b95ddc51abc0d01bf321 415 PANTHER PTHR12526 22 58 1.1E-41 T 22-04-2016 PP4_RS20030 f6d8c813f487b95ddc51abc0d01bf321 415 PANTHER PTHR12526 80 405 1.1E-41 T 22-04-2016 PP4_RS20030 f6d8c813f487b95ddc51abc0d01bf321 415 Gene3D G3DSA:3.40.50.2000 213 382 6.6E-13 T 22-04-2016 PP4_RS20030 f6d8c813f487b95ddc51abc0d01bf321 415 Pfam PF00534 Glycosyl transferases group 1 214 382 6.0E-20 T 22-04-2016 IPR001296 Glycosyl transferase, family 1 PP4_RS20030 f6d8c813f487b95ddc51abc0d01bf321 415 SUPERFAMILY SSF53756 17 59 3.84E-54 T 22-04-2016 PP4_RS20030 f6d8c813f487b95ddc51abc0d01bf321 415 SUPERFAMILY SSF53756 104 403 3.84E-54 T 22-04-2016 PP4_RS20030 f6d8c813f487b95ddc51abc0d01bf321 415 Pfam PF13579 Glycosyl transferase 4-like domain 19 199 4.8E-14 T 22-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain PP4_RS23015 9a609aa3241214307ab608ae9c23360a 318 PANTHER PTHR30273 5 315 7.0E-82 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS23015 9a609aa3241214307ab608ae9c23360a 318 PIRSF PIRSF018266 3 318 1.6E-79 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS23015 9a609aa3241214307ab608ae9c23360a 318 Pfam PF04773 FecR protein 116 205 2.3E-13 T 22-04-2016 IPR006860 FecR protein PP4_RS23015 9a609aa3241214307ab608ae9c23360a 318 PANTHER PTHR30273:SF3 5 315 7.0E-82 T 22-04-2016 PP4_RS23015 9a609aa3241214307ab608ae9c23360a 318 Pfam PF16220 Domain of unknown function (DUF4880) 14 56 8.5E-14 T 22-04-2016 IPR032623 FecR, N-terminal PP4_RS03010 0674e002ddb0bbf757bd378a8e7a1326 324 Pfam PF07726 ATPase family associated with various cellular activities (AAA) 37 169 1.1E-61 T 22-04-2016 IPR011703 ATPase, AAA-3 GO:0005524|GO:0016887 PP4_RS03010 0674e002ddb0bbf757bd378a8e7a1326 324 Gene3D G3DSA:1.10.8.300 207 320 4.3E-36 T 22-04-2016 PP4_RS03010 0674e002ddb0bbf757bd378a8e7a1326 324 PIRSF PIRSF002849 1 324 6.0E-120 T 22-04-2016 IPR016366 ATPase chaperone, AAA-type, MoxR, predicted PP4_RS03010 0674e002ddb0bbf757bd378a8e7a1326 324 PANTHER PTHR11603 2 323 1.0E-124 T 22-04-2016 PP4_RS03010 0674e002ddb0bbf757bd378a8e7a1326 324 Gene3D G3DSA:3.40.50.300 19 184 1.6E-41 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03010 0674e002ddb0bbf757bd378a8e7a1326 324 SUPERFAMILY SSF52540 6 297 1.87E-39 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS03010 0674e002ddb0bbf757bd378a8e7a1326 324 PANTHER PTHR11603:SF148 2 323 1.0E-124 T 22-04-2016 PP4_RS00360 7f7ff49d9bec7c8ce2a4c55443130d1b 110 PANTHER PTHR36423 4 108 9.5E-18 T 22-04-2016 PP4_RS00360 7f7ff49d9bec7c8ce2a4c55443130d1b 110 SUPERFAMILY SSF143410 2 108 8.24E-43 T 22-04-2016 IPR023389 DOPA-like domain PP4_RS00360 7f7ff49d9bec7c8ce2a4c55443130d1b 110 Gene3D G3DSA:3.30.70.1240 2 108 2.4E-40 T 22-04-2016 IPR023389 DOPA-like domain PP4_RS00360 7f7ff49d9bec7c8ce2a4c55443130d1b 110 PIRSF PIRSF028139 1 110 4.2E-49 T 22-04-2016 IPR014980 Dopa 4,5-dioxygenase PP4_RS00360 7f7ff49d9bec7c8ce2a4c55443130d1b 110 Pfam PF08883 Dopa 4,5-dioxygenase family 7 106 5.6E-33 T 22-04-2016 IPR014980 Dopa 4,5-dioxygenase PP4_RS23440 b2b122fd264a5bacd8156ba95c877439 219 PANTHER PTHR30462 12 213 5.5E-29 T 22-04-2016 PP4_RS23440 b2b122fd264a5bacd8156ba95c877439 219 Pfam PF04403 Paraquat-inducible protein A 57 210 2.1E-45 T 22-04-2016 IPR007498 Paraquat-inducible protein A PP4_RS27080 3103776e806f015b5ac430dcb1bb49e2 55 Pfam PF00301 Rubredoxin 3 49 1.6E-24 T 22-04-2016 IPR024935 Rubredoxin domain GO:0005506 PP4_RS27080 3103776e806f015b5ac430dcb1bb49e2 55 ProSitePatterns PS00202 Rubredoxin signature. 33 43 - T 22-04-2016 IPR018527 Rubredoxin, iron-binding site GO:0046872 PP4_RS27080 3103776e806f015b5ac430dcb1bb49e2 55 Gene3D G3DSA:2.20.28.10 1 53 2.1E-28 T 22-04-2016 IPR004039 Rubredoxin-type fold PP4_RS27080 3103776e806f015b5ac430dcb1bb49e2 55 PRINTS PR00163 Rubredoxin signature 33 49 1.1E-9 T 22-04-2016 IPR024935 Rubredoxin domain GO:0005506 PP4_RS27080 3103776e806f015b5ac430dcb1bb49e2 55 PRINTS PR00163 Rubredoxin signature 3 19 1.1E-9 T 22-04-2016 IPR024935 Rubredoxin domain GO:0005506 PP4_RS27080 3103776e806f015b5ac430dcb1bb49e2 55 SUPERFAMILY SSF57802 1 53 2.69E-24 T 22-04-2016 PP4_RS27080 3103776e806f015b5ac430dcb1bb49e2 55 PIRSF PIRSF000071 1 55 2.0E-25 T 22-04-2016 IPR024922 Rubredoxin GO:0005506|GO:0009055 PP4_RS00125 4e8d4c4ee5b5081ef5ca4a0b8e7d8aa3 484 PANTHER PTHR33908 1 415 5.1E-119 T 22-04-2016 PP4_RS00125 4e8d4c4ee5b5081ef5ca4a0b8e7d8aa3 484 Pfam PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase 32 237 3.1E-24 T 22-04-2016 IPR003342 Glycosyl transferase family 39/83 GO:0000030|GO:0006493|GO:0016020 PP4_RS00125 4e8d4c4ee5b5081ef5ca4a0b8e7d8aa3 484 PANTHER PTHR33908:SF4 1 415 5.1E-119 T 22-04-2016 PP4_RS12370 6fcf315c4104ff67ba7f653fbb5e1210 172 Gene3D G3DSA:2.30.110.20 1 170 1.8E-61 T 22-04-2016 IPR008514 Type VI secretion system effector, Hcp PP4_RS12370 6fcf315c4104ff67ba7f653fbb5e1210 172 SUPERFAMILY SSF141452 2 170 8.89E-47 T 22-04-2016 IPR008514 Type VI secretion system effector, Hcp PP4_RS12370 6fcf315c4104ff67ba7f653fbb5e1210 172 PANTHER PTHR36152:SF1 1 169 2.7E-39 T 22-04-2016 PP4_RS12370 6fcf315c4104ff67ba7f653fbb5e1210 172 Pfam PF05638 Type VI secretion system effector, Hcp 6 145 2.1E-40 T 22-04-2016 IPR008514 Type VI secretion system effector, Hcp PP4_RS12370 6fcf315c4104ff67ba7f653fbb5e1210 172 PANTHER PTHR36152 1 169 2.7E-39 T 22-04-2016 PP4_RS12370 6fcf315c4104ff67ba7f653fbb5e1210 172 TIGRFAM TIGR03344 VI_effect_Hcp1: type VI secretion system effector, Hcp1 family 1 154 2.0E-22 T 22-04-2016 IPR008514 Type VI secretion system effector, Hcp PP4_RS25115 4c7f282fd889735a33cc00ee54006411 202 Pfam PF05728 Uncharacterised protein family (UPF0227) 4 187 2.9E-63 T 22-04-2016 IPR008886 Uncharacterised protein family UPF0227/Esterase YqiA PP4_RS25115 4c7f282fd889735a33cc00ee54006411 202 PANTHER PTHR35602:SF3 1 192 3.8E-92 T 22-04-2016 PP4_RS25115 4c7f282fd889735a33cc00ee54006411 202 PANTHER PTHR35602 1 192 3.8E-92 T 22-04-2016 PP4_RS25115 4c7f282fd889735a33cc00ee54006411 202 SUPERFAMILY SSF53474 5 186 2.01E-18 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS25115 4c7f282fd889735a33cc00ee54006411 202 Gene3D G3DSA:3.40.50.1820 4 184 9.1E-19 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS08720 5a145a1e9f52c5a8649991db02bf9ee9 598 Gene3D G3DSA:1.50.10.10 215 588 1.6E-81 T 22-04-2016 IPR012341 Six-hairpin glycosidase GO:0003824 PP4_RS08720 5a145a1e9f52c5a8649991db02bf9ee9 598 PANTHER PTHR31616 5 588 1.2E-180 T 22-04-2016 PP4_RS08720 5a145a1e9f52c5a8649991db02bf9ee9 598 SUPERFAMILY SSF48208 190 587 1.55E-101 T 22-04-2016 IPR008928 Six-hairpin glycosidase-like GO:0003824 PP4_RS08720 5a145a1e9f52c5a8649991db02bf9ee9 598 Pfam PF00723 Glycosyl hydrolases family 15 217 534 1.2E-60 T 22-04-2016 IPR011613 Glycoside hydrolase family 15/Phosphorylase b kinase regulatory chain family Reactome: REACT_474 PP4_RS08720 5a145a1e9f52c5a8649991db02bf9ee9 598 PANTHER PTHR31616:SF0 5 588 1.2E-180 T 22-04-2016 PP4_RS18395 322753497c7604c2b6041a52e820783a 370 SUPERFAMILY SSF52768 2 331 5.76E-101 T 22-04-2016 PP4_RS18395 322753497c7604c2b6041a52e820783a 370 PANTHER PTHR10625 3 307 7.9E-100 T 22-04-2016 IPR000286 Histone deacetylase superfamily PP4_RS18395 322753497c7604c2b6041a52e820783a 370 Pfam PF00850 Histone deacetylase domain 38 320 2.9E-80 T 22-04-2016 IPR023801 Histone deacetylase domain PP4_RS18395 322753497c7604c2b6041a52e820783a 370 PRINTS PR01270 Histone deacetylase superfamily signature 132 155 2.5E-14 T 22-04-2016 IPR000286 Histone deacetylase superfamily PP4_RS18395 322753497c7604c2b6041a52e820783a 370 PRINTS PR01270 Histone deacetylase superfamily signature 166 181 2.5E-14 T 22-04-2016 IPR000286 Histone deacetylase superfamily PP4_RS18395 322753497c7604c2b6041a52e820783a 370 PRINTS PR01270 Histone deacetylase superfamily signature 251 261 2.5E-14 T 22-04-2016 IPR000286 Histone deacetylase superfamily PP4_RS18395 322753497c7604c2b6041a52e820783a 370 Gene3D G3DSA:3.40.800.20 2 329 7.6E-98 T 22-04-2016 IPR023801 Histone deacetylase domain PP4_RS07645 fcd3ad00d21757b32853db2c683fb338 136 PANTHER PTHR30204:SF17 1 118 9.1E-28 T 22-04-2016 PP4_RS07645 fcd3ad00d21757b32853db2c683fb338 136 Pfam PF13411 MerR HTH family regulatory protein 1 66 2.1E-12 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS07645 fcd3ad00d21757b32853db2c683fb338 136 SUPERFAMILY SSF46955 1 117 3.66E-24 T 22-04-2016 IPR009061 Putative DNA-binding domain PP4_RS07645 fcd3ad00d21757b32853db2c683fb338 136 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 2 13 2.4E-5 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS07645 fcd3ad00d21757b32853db2c683fb338 136 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 36 56 2.4E-5 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS07645 fcd3ad00d21757b32853db2c683fb338 136 PRINTS PR00040 MerR bacterial regulatory protein HTH signature 13 26 2.4E-5 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS07645 fcd3ad00d21757b32853db2c683fb338 136 Gene3D G3DSA:1.10.1660.10 1 120 1.4E-26 T 22-04-2016 PP4_RS07645 fcd3ad00d21757b32853db2c683fb338 136 SMART SM00422 1 69 3.9E-14 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS07645 fcd3ad00d21757b32853db2c683fb338 136 PANTHER PTHR30204 1 118 9.1E-28 T 22-04-2016 PP4_RS01445 c1984b83418c3091c7a69f6349210801 151 SUPERFAMILY SSF54637 1 150 3.84E-36 T 22-04-2016 IPR029069 HotDog domain PP4_RS01445 c1984b83418c3091c7a69f6349210801 151 TIGRFAM TIGR02447 yiiD_Cterm: putative thioesterase domain 12 150 9.2E-57 T 22-04-2016 IPR012660 Thioesterase, putative PP4_RS01445 c1984b83418c3091c7a69f6349210801 151 Gene3D G3DSA:3.10.129.10 2 150 4.6E-54 T 22-04-2016 IPR029069 HotDog domain PP4_RS01445 c1984b83418c3091c7a69f6349210801 151 Pfam PF09500 Putative thioesterase (yiiD_Cterm) 6 150 2.4E-49 T 22-04-2016 IPR012660 Thioesterase, putative PP4_RS21350 da482b333ccbcbbfb1f014ef8b333954 139 Pfam PF00072 Response regulator receiver domain 7 78 2.7E-6 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS21350 da482b333ccbcbbfb1f014ef8b333954 139 Gene3D G3DSA:3.40.50.2300 7 123 1.1E-8 T 22-04-2016 PP4_RS21350 da482b333ccbcbbfb1f014ef8b333954 139 SUPERFAMILY SSF52172 6 129 2.13E-10 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS09405 e1471544fe2bc5a610071de2b75c7acb 65 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 49 2.0E-20 T 22-04-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 PP4_RS09405 e1471544fe2bc5a610071de2b75c7acb 65 SUPERFAMILY SSF117130 1 53 8.63E-21 T 22-04-2016 PP4_RS09405 e1471544fe2bc5a610071de2b75c7acb 65 Hamap MF_00167 Carbon storage regulator [csrA]. 1 63 20.247 T 22-04-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 PP4_RS09405 e1471544fe2bc5a610071de2b75c7acb 65 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 55 1.4E-27 T 22-04-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 PP4_RS09405 e1471544fe2bc5a610071de2b75c7acb 65 PANTHER PTHR34984:SF1 1 53 1.9E-26 T 22-04-2016 PP4_RS09405 e1471544fe2bc5a610071de2b75c7acb 65 PANTHER PTHR34984 1 53 1.9E-26 T 22-04-2016 PP4_RS09405 e1471544fe2bc5a610071de2b75c7acb 65 Pfam PF02599 Global regulator protein family 1 52 3.8E-27 T 22-04-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 PP4_RS10075 0b0ef76a18a5d381de6d249935a88823 305 SUPERFAMILY SSF161098 33 295 1.96E-53 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS10075 0b0ef76a18a5d381de6d249935a88823 305 PANTHER PTHR30193:SF8 26 295 1.1E-82 T 22-04-2016 PP4_RS10075 0b0ef76a18a5d381de6d249935a88823 305 Gene3D G3DSA:1.10.3720.10 30 292 6.8E-50 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS10075 0b0ef76a18a5d381de6d249935a88823 305 PANTHER PTHR30193 26 295 1.1E-82 T 22-04-2016 PP4_RS10075 0b0ef76a18a5d381de6d249935a88823 305 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 104 293 1.6E-9 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS14890 df8d7ce2edc5b99569db5ae41534c43f 119 PANTHER PTHR35145 1 119 1.5E-28 T 22-04-2016 PP4_RS14890 df8d7ce2edc5b99569db5ae41534c43f 119 Pfam PF04237 YjbR 16 104 6.2E-16 T 22-04-2016 IPR007351 Uncharacterised protein YjbR PP4_RS14890 df8d7ce2edc5b99569db5ae41534c43f 119 SUPERFAMILY SSF142906 6 117 6.54E-29 T 22-04-2016 PP4_RS06665 2bd32fd3f5dd17d4404794d10597fe1e 728 SUPERFAMILY SSF52151 127 299 9.42E-58 T 22-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 PP4_RS06665 2bd32fd3f5dd17d4404794d10597fe1e 728 SUPERFAMILY SSF52151 24 96 9.42E-58 T 22-04-2016 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase GO:0008152 PP4_RS06665 2bd32fd3f5dd17d4404794d10597fe1e 728 Gene3D G3DSA:3.40.1090.10 29 223 2.5E-15 T 22-04-2016 PP4_RS06665 2bd32fd3f5dd17d4404794d10597fe1e 728 Pfam PF01103 Surface antigen 453 728 8.3E-8 T 22-04-2016 IPR000184 Bacterial surface antigen (D15) GO:0019867 PP4_RS06665 2bd32fd3f5dd17d4404794d10597fe1e 728 PANTHER PTHR14226 132 455 4.4E-95 T 22-04-2016 PP4_RS06665 2bd32fd3f5dd17d4404794d10597fe1e 728 PANTHER PTHR14226 23 115 4.4E-95 T 22-04-2016 PP4_RS06665 2bd32fd3f5dd17d4404794d10597fe1e 728 Pfam PF07244 Surface antigen variable number repeat 333 400 1.9E-4 T 22-04-2016 IPR010827 Surface antigen variable number GO:0019867 PP4_RS06665 2bd32fd3f5dd17d4404794d10597fe1e 728 PANTHER PTHR14226:SF37 132 455 4.4E-95 T 22-04-2016 PP4_RS06665 2bd32fd3f5dd17d4404794d10597fe1e 728 PANTHER PTHR14226:SF37 23 115 4.4E-95 T 22-04-2016 PP4_RS06665 2bd32fd3f5dd17d4404794d10597fe1e 728 Pfam PF01734 Patatin-like phospholipase 29 221 2.3E-28 T 22-04-2016 IPR002641 Patatin/Phospholipase A2-related GO:0006629 PP4_RS00705 18f5d702ea15f88bf08fc0c595270f41 651 Pfam PF13387 Domain of unknown function (DUF4105) 272 437 8.2E-27 T 22-04-2016 IPR025178 Domain of unknown function DUF4105 PP4_RS23480 44f58d50dff10c5c180772746f7e4e8d 283 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 98 120 - T 22-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 PP4_RS23480 44f58d50dff10c5c180772746f7e4e8d 283 Pfam PF01066 CDP-alcohol phosphatidyltransferase 43 120 1.5E-14 T 22-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 PP4_RS23480 44f58d50dff10c5c180772746f7e4e8d 283 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 48 224 6.4E-35 T 22-04-2016 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 PP4_RS23480 44f58d50dff10c5c180772746f7e4e8d 283 PANTHER PTHR15362 31 183 8.7E-34 T 22-04-2016 PP4_RS11335 67c1d436a02337bbce52d587425227f6 239 Gene3D G3DSA:1.10.3720.10 17 231 8.2E-35 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS11335 67c1d436a02337bbce52d587425227f6 239 SUPERFAMILY SSF161098 18 231 3.66E-35 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS11335 67c1d436a02337bbce52d587425227f6 239 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 18 123 4.1E-13 T 22-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PP4_RS11335 67c1d436a02337bbce52d587425227f6 239 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 37 229 9.2E-19 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS11335 67c1d436a02337bbce52d587425227f6 239 PANTHER PTHR30133 13 239 3.7E-64 T 22-04-2016 PP4_RS17000 0c4417013f8124abd3958862c03abd37 299 SUPERFAMILY SSF51197 99 230 5.49E-18 T 22-04-2016 PP4_RS17000 0c4417013f8124abd3958862c03abd37 299 PANTHER PTHR12366 1 243 4.1E-148 T 22-04-2016 PP4_RS17000 0c4417013f8124abd3958862c03abd37 299 Pfam PF05118 Aspartyl/Asparaginyl beta-hydroxylase 69 222 1.9E-49 T 22-04-2016 IPR007803 Aspartyl/asparaginy/proline hydroxylase GO:0018193 PP4_RS17000 0c4417013f8124abd3958862c03abd37 299 Gene3D G3DSA:2.60.120.330 121 222 4.4E-16 T 22-04-2016 IPR027443 Isopenicillin N synthase-like PP4_RS17000 0c4417013f8124abd3958862c03abd37 299 PANTHER PTHR12366:SF25 1 243 4.1E-148 T 22-04-2016 PP4_RS18550 bed85ccfeeae359116732805a7d0fd4f 235 PANTHER PTHR30035 24 234 2.0E-76 T 22-04-2016 IPR007428 MlaA lipoprotein GO:0016020 PP4_RS18550 bed85ccfeeae359116732805a7d0fd4f 235 PRINTS PR01805 VacJ lipoprotein signature 140 157 1.8E-27 T 22-04-2016 IPR007428 MlaA lipoprotein GO:0016020 PP4_RS18550 bed85ccfeeae359116732805a7d0fd4f 235 PRINTS PR01805 VacJ lipoprotein signature 104 121 1.8E-27 T 22-04-2016 IPR007428 MlaA lipoprotein GO:0016020 PP4_RS18550 bed85ccfeeae359116732805a7d0fd4f 235 PRINTS PR01805 VacJ lipoprotein signature 36 49 1.8E-27 T 22-04-2016 IPR007428 MlaA lipoprotein GO:0016020 PP4_RS18550 bed85ccfeeae359116732805a7d0fd4f 235 PRINTS PR01805 VacJ lipoprotein signature 53 69 1.8E-27 T 22-04-2016 IPR007428 MlaA lipoprotein GO:0016020 PP4_RS18550 bed85ccfeeae359116732805a7d0fd4f 235 PANTHER PTHR30035:SF3 24 234 2.0E-76 T 22-04-2016 PP4_RS18550 bed85ccfeeae359116732805a7d0fd4f 235 Pfam PF04333 MlaA lipoprotein 35 224 7.3E-75 T 22-04-2016 IPR007428 MlaA lipoprotein GO:0016020 PP4_RS02585 74b1c1572dd4fdadc98a7fe2c5e8349f 116 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 3 116 26.788 T 22-04-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02585 74b1c1572dd4fdadc98a7fe2c5e8349f 116 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 3 116 2.2E-41 T 22-04-2016 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02585 74b1c1572dd4fdadc98a7fe2c5e8349f 116 PANTHER PTHR12899 8 116 1.3E-41 T 22-04-2016 PP4_RS02585 74b1c1572dd4fdadc98a7fe2c5e8349f 116 SUPERFAMILY SSF53137 4 114 1.07E-50 T 22-04-2016 PP4_RS02585 74b1c1572dd4fdadc98a7fe2c5e8349f 116 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 5 116 2.6E-41 T 22-04-2016 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02585 74b1c1572dd4fdadc98a7fe2c5e8349f 116 Gene3D G3DSA:3.30.420.100 24 116 3.6E-39 T 22-04-2016 PP4_RS02645 777f77990bb6691404f6b5c720e6bc6b 154 ProSitePatterns PS00549 Bacterioferritin signature. 1 19 - T 22-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 PP4_RS02645 777f77990bb6691404f6b5c720e6bc6b 154 PANTHER PTHR30295 1 154 4.4E-89 T 22-04-2016 PP4_RS02645 777f77990bb6691404f6b5c720e6bc6b 154 SUPERFAMILY SSF47240 1 154 2.27E-44 T 22-04-2016 IPR009078 Ferritin-like superfamily PP4_RS02645 777f77990bb6691404f6b5c720e6bc6b 154 PANTHER PTHR30295:SF9 1 154 4.4E-89 T 22-04-2016 PP4_RS02645 777f77990bb6691404f6b5c720e6bc6b 154 Pfam PF00210 Ferritin-like domain 8 142 1.6E-33 T 22-04-2016 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 PP4_RS02645 777f77990bb6691404f6b5c720e6bc6b 154 PIRSF PIRSF002560 1 154 5.3E-63 T 22-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 PP4_RS02645 777f77990bb6691404f6b5c720e6bc6b 154 PRINTS PR00601 Bacterioferritin signature 23 43 1.8E-37 T 22-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 PP4_RS02645 777f77990bb6691404f6b5c720e6bc6b 154 PRINTS PR00601 Bacterioferritin signature 3 22 1.8E-37 T 22-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 PP4_RS02645 777f77990bb6691404f6b5c720e6bc6b 154 PRINTS PR00601 Bacterioferritin signature 44 64 1.8E-37 T 22-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 PP4_RS02645 777f77990bb6691404f6b5c720e6bc6b 154 PRINTS PR00601 Bacterioferritin signature 85 105 1.8E-37 T 22-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 PP4_RS02645 777f77990bb6691404f6b5c720e6bc6b 154 PRINTS PR00601 Bacterioferritin signature 106 126 1.8E-37 T 22-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 PP4_RS02645 777f77990bb6691404f6b5c720e6bc6b 154 PRINTS PR00601 Bacterioferritin signature 128 149 1.8E-37 T 22-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 PP4_RS02645 777f77990bb6691404f6b5c720e6bc6b 154 Gene3D G3DSA:1.20.1260.10 1 154 1.8E-52 T 22-04-2016 IPR012347 Ferritin-related PP4_RS02645 777f77990bb6691404f6b5c720e6bc6b 154 TIGRFAM TIGR00754 bfr: bacterioferritin 1 154 7.3E-48 T 22-04-2016 IPR002024 Bacterioferritin GO:0006826|GO:0006879|GO:0008199 PP4_RS04045 7e5350e2640773cc372b2be7c69186cb 485 PANTHER PTHR13285:SF23 1 433 3.4E-114 T 22-04-2016 PP4_RS04045 7e5350e2640773cc372b2be7c69186cb 485 PIRSF PIRSF500217 1 485 9.6E-162 T 22-04-2016 IPR028362 Alginate O-acetyltransferase AlgI GO:0042121 KEGG: 00061+2.3.1.-|KEGG: 00253+2.3.1.-|KEGG: 00261+2.3.1.-|KEGG: 00310+2.3.1.-|KEGG: 00330+2.3.1.-|KEGG: 00332+2.3.1.-|KEGG: 00340+2.3.1.-|KEGG: 00350+2.3.1.-|KEGG: 00564+2.3.1.-|KEGG: 00565+2.3.1.-|KEGG: 00604+2.3.1.-|KEGG: 00623+2.3.1.-|KEGG: 00626+2.3.1.-|KEGG: 00627+2.3.1.-|KEGG: 00642+2.3.1.-|KEGG: 00650+2.3.1.-|KEGG: 00680+2.3.1.-|KEGG: 00903+2.3.1.-|KEGG: 00904+2.3.1.-|KEGG: 00906+2.3.1.-|KEGG: 00940+2.3.1.-|KEGG: 00942+2.3.1.-|KEGG: 00950+2.3.1.-|KEGG: 00960+2.3.1.-|KEGG: 00965+2.3.1.-|UniPathway: UPA00286 PP4_RS04045 7e5350e2640773cc372b2be7c69186cb 485 PANTHER PTHR13285 1 433 3.4E-114 T 22-04-2016 PP4_RS04045 7e5350e2640773cc372b2be7c69186cb 485 Pfam PF03062 MBOAT, membrane-bound O-acyltransferase family 150 355 2.1E-26 T 22-04-2016 IPR004299 Membrane bound O-acyl transferase, MBOAT PP4_RS04045 7e5350e2640773cc372b2be7c69186cb 485 PIRSF PIRSF016636 1 485 3.8E-160 T 22-04-2016 IPR024194 Alginate O-acetyltransferase AlgI/D-alanyl transfer protein DltB PP4_RS22825 615f1bb06f93c0e8fc2ab5f1c1303df7 424 PANTHER PTHR11119:SF49 8 422 2.7E-175 T 22-04-2016 PP4_RS22825 615f1bb06f93c0e8fc2ab5f1c1303df7 424 Pfam PF00860 Permease family 12 378 2.5E-94 T 22-04-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 PP4_RS22825 615f1bb06f93c0e8fc2ab5f1c1303df7 424 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 327 347 - T 22-04-2016 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 PP4_RS22825 615f1bb06f93c0e8fc2ab5f1c1303df7 424 PANTHER PTHR11119 8 422 2.7E-175 T 22-04-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 PP4_RS22825 615f1bb06f93c0e8fc2ab5f1c1303df7 424 TIGRFAM TIGR00801 ncs2: uracil-xanthine permease 9 407 1.1E-111 T 22-04-2016 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 PP4_RS08615 20748cccc7ea26f0c3fdaecd0ec8a4cc 218 PANTHER PTHR33516 128 212 1.5E-16 T 22-04-2016 PP4_RS08615 20748cccc7ea26f0c3fdaecd0ec8a4cc 218 Pfam PF00717 Peptidase S24-like 133 199 6.7E-9 T 22-04-2016 IPR019759 Peptidase S24/S26A/S26B PP4_RS08615 20748cccc7ea26f0c3fdaecd0ec8a4cc 218 SUPERFAMILY SSF47413 4 60 6.97E-11 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS08615 20748cccc7ea26f0c3fdaecd0ec8a4cc 218 SUPERFAMILY SSF51306 126 214 8.72E-18 T 22-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C PP4_RS08615 20748cccc7ea26f0c3fdaecd0ec8a4cc 218 Gene3D G3DSA:1.10.260.40 10 60 3.4E-12 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS08615 20748cccc7ea26f0c3fdaecd0ec8a4cc 218 PANTHER PTHR33516:SF3 128 212 1.5E-16 T 22-04-2016 PP4_RS08615 20748cccc7ea26f0c3fdaecd0ec8a4cc 218 SMART SM00530 9 69 1.9E-8 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS08615 20748cccc7ea26f0c3fdaecd0ec8a4cc 218 Gene3D G3DSA:2.10.109.10 125 215 1.7E-21 T 22-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain PP4_RS08615 20748cccc7ea26f0c3fdaecd0ec8a4cc 218 Pfam PF01381 Helix-turn-helix 11 49 5.8E-9 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS14380 3aef161d93bebbbefbbddf991be6a7ff 193 Pfam PF01810 LysE type translocator 13 193 1.5E-23 T 22-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PP4_RS14380 3aef161d93bebbbefbbddf991be6a7ff 193 PANTHER PTHR30086 1 193 6.0E-46 T 22-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PP4_RS14380 3aef161d93bebbbefbbddf991be6a7ff 193 PANTHER PTHR30086:SF12 1 193 6.0E-46 T 22-04-2016 PP4_RS14665 89f2f897529cbe1b022a1771648053d0 416 SUPERFAMILY SSF51905 2 283 3.17E-50 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS14665 89f2f897529cbe1b022a1771648053d0 416 SUPERFAMILY SSF51905 327 345 3.17E-50 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS14665 89f2f897529cbe1b022a1771648053d0 416 PANTHER PTHR13847:SF191 2 392 2.9E-135 T 22-04-2016 PP4_RS14665 89f2f897529cbe1b022a1771648053d0 416 Gene3D G3DSA:3.30.9.10 86 137 2.2E-10 T 22-04-2016 PP4_RS14665 89f2f897529cbe1b022a1771648053d0 416 Gene3D G3DSA:3.30.9.10 226 250 2.2E-10 T 22-04-2016 PP4_RS14665 89f2f897529cbe1b022a1771648053d0 416 PANTHER PTHR13847 2 392 2.9E-135 T 22-04-2016 PP4_RS14665 89f2f897529cbe1b022a1771648053d0 416 Pfam PF01266 FAD dependent oxidoreductase 3 390 2.1E-71 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PP4_RS14665 89f2f897529cbe1b022a1771648053d0 416 Gene3D G3DSA:3.50.50.60 138 215 6.8E-33 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS14665 89f2f897529cbe1b022a1771648053d0 416 Gene3D G3DSA:3.50.50.60 2 84 6.8E-33 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS14005 4ccb122dbc4569adb2b6fa0528473c1e 272 Gene3D G3DSA:1.20.144.10 101 244 4.4E-8 T 22-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PP4_RS14005 4ccb122dbc4569adb2b6fa0528473c1e 272 Pfam PF01569 PAP2 superfamily 119 250 3.6E-11 T 22-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PP4_RS14005 4ccb122dbc4569adb2b6fa0528473c1e 272 SUPERFAMILY SSF48317 73 252 1.9E-9 T 22-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PP4_RS17890 289d7c13c26556a5419d7325ed9c2321 188 SUPERFAMILY SSF53474 9 180 4.01E-27 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS17890 289d7c13c26556a5419d7325ed9c2321 188 Gene3D G3DSA:3.40.50.1820 8 186 4.2E-37 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS17890 289d7c13c26556a5419d7325ed9c2321 188 Pfam PF06821 Serine hydrolase 10 184 8.5E-45 T 22-04-2016 IPR010662 Putative hydrolase RBBP9/YdeN GO:0016787 KEGG: 00231+3.-.-.-|KEGG: 00563+3.-.-.-|KEGG: 00983+3.-.-.- PP4_RS00970 725207b4090cf43b76e54260d4a777be 168 Gene3D G3DSA:1.20.1550.10 6 164 1.1E-25 T 22-04-2016 IPR023380 Disulphide bond formation protein DsbB-like domain PP4_RS00970 725207b4090cf43b76e54260d4a777be 168 Pfam PF02600 Disulfide bond formation protein DsbB 8 151 9.9E-22 T 22-04-2016 IPR003752 Disulphide bond formation protein DsbB/BdbC GO:0015035|GO:0016020 PP4_RS00970 725207b4090cf43b76e54260d4a777be 168 SUPERFAMILY SSF158442 10 152 3.4E-26 T 22-04-2016 PP4_RS00970 725207b4090cf43b76e54260d4a777be 168 PANTHER PTHR36570 1 168 3.0E-12 T 22-04-2016 PP4_RS20585 6f13e8918d6a77a4efa597401181596f 86 Pfam PF11391 Protein of unknown function (DUF2798) 24 80 7.4E-20 T 22-04-2016 IPR021529 Protein of unknown function DUF2798 PP4_RS25140 60f2b9c2182d0eb8a47a2dc19d7f69d3 427 TIGRFAM TIGR02358 thia_cytX: putative hydroxymethylpyrimidine transporter CytX 23 416 2.5E-147 T 22-04-2016 IPR012732 Hydroxymethylpyrimidine transporter CytX PP4_RS25140 60f2b9c2182d0eb8a47a2dc19d7f69d3 427 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 12 397 1.0E-23 T 22-04-2016 IPR001248 Purine-cytosine permease GO:0005215|GO:0016020|GO:0055085 PP4_RS25140 60f2b9c2182d0eb8a47a2dc19d7f69d3 427 PANTHER PTHR30569 1 416 1.5E-44 T 22-04-2016 IPR030191 Cytosine permease GO:0015209|GO:0016021 PP4_RS14975 0652954a163a0788b7ee455e43610614 165 Pfam PF02814 UreE urease accessory protein, N-terminal domain 7 64 3.6E-13 T 22-04-2016 IPR004029 UreE urease accessory, N-terminal PP4_RS14975 0652954a163a0788b7ee455e43610614 165 PIRSF PIRSF036402 2 154 1.8E-47 T 22-04-2016 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 PP4_RS14975 0652954a163a0788b7ee455e43610614 165 Hamap MF_00822 Urease accessory protein UreE [ureE]. 2 141 25.747 T 22-04-2016 IPR012406 Urease accessory protein UreE GO:0005737|GO:0006457|GO:0016151|GO:0018307 PP4_RS14975 0652954a163a0788b7ee455e43610614 165 Pfam PF05194 UreE urease accessory protein, C-terminal domain 74 156 2.8E-32 T 22-04-2016 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 PP4_RS14975 0652954a163a0788b7ee455e43610614 165 Gene3D G3DSA:2.60.260.20 1 73 6.4E-31 T 22-04-2016 PP4_RS14975 0652954a163a0788b7ee455e43610614 165 SUPERFAMILY SSF69287 1 73 1.96E-14 T 22-04-2016 IPR004029 UreE urease accessory, N-terminal PP4_RS14975 0652954a163a0788b7ee455e43610614 165 Gene3D G3DSA:3.30.70.790 74 143 3.5E-35 T 22-04-2016 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 PP4_RS14975 0652954a163a0788b7ee455e43610614 165 SMART SM00988 1 66 3.9E-19 T 22-04-2016 IPR004029 UreE urease accessory, N-terminal PP4_RS14975 0652954a163a0788b7ee455e43610614 165 SUPERFAMILY SSF69737 73 140 5.36E-24 T 22-04-2016 IPR007864 Urease accessory protein UreE, C-terminal domain GO:0006461|GO:0016151|GO:0019627 PP4_RS16280 c71b6e82cb2d28d38bd5c882e1e3aceb 347 Gene3D G3DSA:3.40.190.10 40 126 6.8E-18 T 22-04-2016 PP4_RS16280 c71b6e82cb2d28d38bd5c882e1e3aceb 347 Gene3D G3DSA:3.40.190.10 273 337 6.8E-18 T 22-04-2016 PP4_RS16280 c71b6e82cb2d28d38bd5c882e1e3aceb 347 SUPERFAMILY SSF53850 43 344 9.88E-55 T 22-04-2016 PP4_RS16280 c71b6e82cb2d28d38bd5c882e1e3aceb 347 PANTHER PTHR30006 26 347 2.5E-59 T 22-04-2016 PP4_RS16280 c71b6e82cb2d28d38bd5c882e1e3aceb 347 Pfam PF13416 Bacterial extracellular solute-binding protein 49 307 2.1E-28 T 22-04-2016 PP4_RS16280 c71b6e82cb2d28d38bd5c882e1e3aceb 347 Gene3D G3DSA:3.40.190.10 128 272 3.6E-29 T 22-04-2016 PP4_RS16280 c71b6e82cb2d28d38bd5c882e1e3aceb 347 PANTHER PTHR30006:SF7 26 347 2.5E-59 T 22-04-2016 PP4_RS07500 a95d43cb5467ca4b8f2527274c530d3e 260 Pfam PF01261 Xylose isomerase-like TIM barrel 21 219 6.2E-35 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PP4_RS07500 a95d43cb5467ca4b8f2527274c530d3e 260 PIRSF PIRSF006241 1 259 6.8E-97 T 22-04-2016 IPR026040 Hydroxypyruvate isomerase-like KEGG: 00630+5.3.1.22 PP4_RS07500 a95d43cb5467ca4b8f2527274c530d3e 260 TIGRFAM TIGR03234 OH-pyruv-isom: hydroxypyruvate isomerase 2 255 3.6E-123 T 22-04-2016 IPR017643 Hydroxypyruvate isomerase KEGG: 00630+5.3.1.22 PP4_RS07500 a95d43cb5467ca4b8f2527274c530d3e 260 SUPERFAMILY SSF51658 1 256 1.02E-88 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PP4_RS07500 a95d43cb5467ca4b8f2527274c530d3e 260 Gene3D G3DSA:3.20.20.150 1 255 2.5E-93 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PP4_RS07500 a95d43cb5467ca4b8f2527274c530d3e 260 PANTHER PTHR12110 1 255 1.7E-102 T 22-04-2016 PP4_RS07500 a95d43cb5467ca4b8f2527274c530d3e 260 PANTHER PTHR12110:SF3 1 255 1.7E-102 T 22-04-2016 PP4_RS10685 b9f5473ed898ebfdd849d92bbbe8b8e6 367 Gene3D G3DSA:3.40.190.10 142 316 1.6E-59 T 22-04-2016 PP4_RS10685 b9f5473ed898ebfdd849d92bbbe8b8e6 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 266 285 3.9E-54 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS10685 b9f5473ed898ebfdd849d92bbbe8b8e6 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 126 142 3.9E-54 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS10685 b9f5473ed898ebfdd849d92bbbe8b8e6 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 77 91 3.9E-54 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS10685 b9f5473ed898ebfdd849d92bbbe8b8e6 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 179 198 3.9E-54 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS10685 b9f5473ed898ebfdd849d92bbbe8b8e6 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 50 71 3.9E-54 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS10685 b9f5473ed898ebfdd849d92bbbe8b8e6 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 216 235 3.9E-54 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS10685 b9f5473ed898ebfdd849d92bbbe8b8e6 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 34 50 3.9E-54 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS10685 b9f5473ed898ebfdd849d92bbbe8b8e6 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 311 337 3.9E-54 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS10685 b9f5473ed898ebfdd849d92bbbe8b8e6 367 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 93 106 3.9E-54 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS10685 b9f5473ed898ebfdd849d92bbbe8b8e6 367 Gene3D G3DSA:3.40.190.10 30 141 1.2E-20 T 22-04-2016 PP4_RS10685 b9f5473ed898ebfdd849d92bbbe8b8e6 367 PIRSF PIRSF019574 1 367 9.1E-116 T 22-04-2016 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 PP4_RS10685 b9f5473ed898ebfdd849d92bbbe8b8e6 367 PANTHER PTHR30222 1 366 2.8E-124 T 22-04-2016 PP4_RS10685 b9f5473ed898ebfdd849d92bbbe8b8e6 367 Pfam PF13416 Bacterial extracellular solute-binding protein 46 332 6.8E-31 T 22-04-2016 PP4_RS10685 b9f5473ed898ebfdd849d92bbbe8b8e6 367 PANTHER PTHR30222:SF11 1 366 2.8E-124 T 22-04-2016 PP4_RS10685 b9f5473ed898ebfdd849d92bbbe8b8e6 367 SUPERFAMILY SSF53850 29 366 8.51E-90 T 22-04-2016 PP4_RS14810 34b4754ec94e50897ee2f39fbcec08d9 187 PANTHER PTHR30055 1 174 1.1E-19 T 22-04-2016 PP4_RS14810 34b4754ec94e50897ee2f39fbcec08d9 187 Gene3D G3DSA:1.10.10.60 5 44 1.3E-12 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS14810 34b4754ec94e50897ee2f39fbcec08d9 187 Gene3D G3DSA:1.10.357.10 60 179 5.1E-31 T 22-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PP4_RS14810 34b4754ec94e50897ee2f39fbcec08d9 187 Pfam PF00440 Bacterial regulatory proteins, tetR family 20 61 4.9E-10 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS14810 34b4754ec94e50897ee2f39fbcec08d9 187 SUPERFAMILY SSF48498 81 179 7.56E-22 T 22-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal PP4_RS14810 34b4754ec94e50897ee2f39fbcec08d9 187 SUPERFAMILY SSF46689 1 66 6.67E-14 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS14810 34b4754ec94e50897ee2f39fbcec08d9 187 Gene3D G3DSA:1.10.10.60 45 59 4.0E-6 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS14810 34b4754ec94e50897ee2f39fbcec08d9 187 PANTHER PTHR30055:SF59 1 174 1.1E-19 T 22-04-2016 PP4_RS14040 29820ca006ac2d0e66ee38f0eef0090c 442 PANTHER PTHR15498 36 276 8.2E-42 T 22-04-2016 PP4_RS14040 29820ca006ac2d0e66ee38f0eef0090c 442 PANTHER PTHR15498:SF49 36 276 8.2E-42 T 22-04-2016 PP4_RS18480 772abe0706da2b1e74ffefb4cdf0d3cf 153 PANTHER PTHR30204 1 153 4.5E-42 T 22-04-2016 PP4_RS18480 772abe0706da2b1e74ffefb4cdf0d3cf 153 PANTHER PTHR30204:SF30 1 153 4.5E-42 T 22-04-2016 PP4_RS18480 772abe0706da2b1e74ffefb4cdf0d3cf 153 Pfam PF13411 MerR HTH family regulatory protein 1 68 2.0E-14 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS18480 772abe0706da2b1e74ffefb4cdf0d3cf 153 SUPERFAMILY SSF46955 1 112 1.98E-23 T 22-04-2016 IPR009061 Putative DNA-binding domain PP4_RS18480 772abe0706da2b1e74ffefb4cdf0d3cf 153 Gene3D G3DSA:1.10.1660.10 58 120 2.7E-7 T 22-04-2016 PP4_RS18480 772abe0706da2b1e74ffefb4cdf0d3cf 153 ProSitePatterns PS00552 MerR-type HTH domain signature. 4 26 - T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS18480 772abe0706da2b1e74ffefb4cdf0d3cf 153 SMART SM00422 1 70 6.9E-20 T 22-04-2016 IPR000551 MerR-type HTH domain GO:0003677|GO:0006355 PP4_RS18480 772abe0706da2b1e74ffefb4cdf0d3cf 153 Gene3D G3DSA:1.10.1660.10 1 57 1.7E-20 T 22-04-2016 PP4_RS03185 79451391fc23ca68590c0597b26e09c6 214 SUPERFAMILY SSF51735 5 198 1.3E-40 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS03185 79451391fc23ca68590c0597b26e09c6 214 PANTHER PTHR14097:SF7 1 213 9.4E-67 T 22-04-2016 PP4_RS03185 79451391fc23ca68590c0597b26e09c6 214 Pfam PF13460 NAD(P)H-binding 12 155 1.3E-7 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS03185 79451391fc23ca68590c0597b26e09c6 214 PANTHER PTHR14097 1 213 9.4E-67 T 22-04-2016 PP4_RS03185 79451391fc23ca68590c0597b26e09c6 214 Gene3D G3DSA:3.40.50.720 3 211 1.3E-46 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS17215 272eda9ab5b04b5fa43fe3e346fbe620 360 SUPERFAMILY SSF52266 74 153 5.04E-9 T 22-04-2016 IPR013830 SGNH hydrolase-type esterase domain PP4_RS17215 272eda9ab5b04b5fa43fe3e346fbe620 360 SUPERFAMILY SSF52266 278 342 5.04E-9 T 22-04-2016 IPR013830 SGNH hydrolase-type esterase domain PP4_RS17215 272eda9ab5b04b5fa43fe3e346fbe620 360 SUPERFAMILY SSF52266 219 250 5.04E-9 T 22-04-2016 IPR013830 SGNH hydrolase-type esterase domain PP4_RS02655 38cbdbe6a279e862418125d04760e609 464 Pfam PF07690 Major Facilitator Superfamily 20 356 3.4E-39 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS02655 38cbdbe6a279e862418125d04760e609 464 PANTHER PTHR23510:SF6 13 404 7.4E-213 T 22-04-2016 PP4_RS02655 38cbdbe6a279e862418125d04760e609 464 PANTHER PTHR23510 13 404 7.4E-213 T 22-04-2016 PP4_RS02655 38cbdbe6a279e862418125d04760e609 464 Gene3D G3DSA:1.20.1250.20 18 193 2.5E-36 T 22-04-2016 PP4_RS02655 38cbdbe6a279e862418125d04760e609 464 Gene3D G3DSA:1.20.1250.20 213 397 7.2E-22 T 22-04-2016 PP4_RS02655 38cbdbe6a279e862418125d04760e609 464 SUPERFAMILY SSF103473 14 395 1.96E-66 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS18825 e091362f5664be6765d2f316729f948b 402 Pfam PF00909 Ammonium Transporter Family 19 395 2.0E-84 T 22-04-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 PP4_RS18825 e091362f5664be6765d2f316729f948b 402 Gene3D G3DSA:1.10.3430.10 10 380 3.8E-91 T 22-04-2016 IPR029020 Ammonium/urea transporter PP4_RS18825 e091362f5664be6765d2f316729f948b 402 ProSitePatterns PS01219 Ammonium transporters signature. 163 188 - T 22-04-2016 IPR018047 Ammonium transporter, conserved site GO:0008519|GO:0016020|GO:0072488 PP4_RS18825 e091362f5664be6765d2f316729f948b 402 PANTHER PTHR11730:SF6 1 398 8.1E-119 T 22-04-2016 PP4_RS18825 e091362f5664be6765d2f316729f948b 402 PANTHER PTHR11730 1 398 8.1E-119 T 22-04-2016 IPR001905 Ammonium transporter GO:0008519|GO:0016020|GO:0072488 PP4_RS18825 e091362f5664be6765d2f316729f948b 402 SUPERFAMILY SSF111352 13 380 2.35E-92 T 22-04-2016 IPR024041 Ammonium transporter AmtB-like domain GO:0008519|GO:0015696|GO:0016020 PP4_RS27195 ffd18facee93a0ccf91752631b8722df 474 PANTHER PTHR11444 1 468 1.6E-267 T 22-04-2016 IPR000362 Fumarate lyase family PP4_RS27195 ffd18facee93a0ccf91752631b8722df 474 SUPERFAMILY SSF48557 7 465 4.08E-144 T 22-04-2016 IPR008948 L-Aspartase-like GO:0003824 PP4_RS27195 ffd18facee93a0ccf91752631b8722df 474 PANTHER PTHR11444:SF25 1 468 1.6E-267 T 22-04-2016 PP4_RS27195 ffd18facee93a0ccf91752631b8722df 474 Gene3D G3DSA:1.10.40.30 423 468 3.3E-21 T 22-04-2016 PP4_RS27195 ffd18facee93a0ccf91752631b8722df 474 Pfam PF00206 Lyase 15 347 6.6E-113 T 22-04-2016 IPR022761 Fumarate lyase, N-terminal PP4_RS27195 ffd18facee93a0ccf91752631b8722df 474 Gene3D G3DSA:1.20.200.10 144 422 2.1E-88 T 22-04-2016 PP4_RS27195 ffd18facee93a0ccf91752631b8722df 474 Pfam PF10415 Fumarase C C-terminus 413 465 1.8E-20 T 22-04-2016 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|UniPathway: UPA00223 PP4_RS27195 ffd18facee93a0ccf91752631b8722df 474 Gene3D G3DSA:1.10.275.10 6 143 8.2E-55 T 22-04-2016 IPR024083 Fumarase/histidase, N-terminal PP4_RS27195 ffd18facee93a0ccf91752631b8722df 474 PRINTS PR00149 Fumarate lyase superfamily signature 139 157 1.3E-28 T 22-04-2016 IPR000362 Fumarate lyase family PP4_RS27195 ffd18facee93a0ccf91752631b8722df 474 PRINTS PR00149 Fumarate lyase superfamily signature 276 303 1.3E-28 T 22-04-2016 IPR000362 Fumarate lyase family PP4_RS27195 ffd18facee93a0ccf91752631b8722df 474 PRINTS PR00149 Fumarate lyase superfamily signature 322 338 1.3E-28 T 22-04-2016 IPR000362 Fumarate lyase family PP4_RS27195 ffd18facee93a0ccf91752631b8722df 474 PRINTS PR00149 Fumarate lyase superfamily signature 184 202 1.3E-28 T 22-04-2016 IPR000362 Fumarate lyase family PP4_RS27195 ffd18facee93a0ccf91752631b8722df 474 TIGRFAM TIGR00839 aspA: aspartate ammonia-lyase 8 468 9.1E-209 T 22-04-2016 IPR004708 Aspartate ammonia-lyase GO:0006531|GO:0008797 KEGG: 00250+4.3.1.1 PP4_RS27195 ffd18facee93a0ccf91752631b8722df 474 ProSitePatterns PS00163 Fumarate lyases signature. 322 331 - T 22-04-2016 IPR020557 Fumarate lyase, conserved site GO:0003824 PP4_RS02910 4ae57db01e11d75d66cce82809637327 401 ProSitePatterns PS01288 Uncharacterized protein family UPF0027 signature. 28 57 - T 22-04-2016 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 PP4_RS02910 4ae57db01e11d75d66cce82809637327 401 PANTHER PTHR11118:SF3 1 401 1.7E-205 T 22-04-2016 PP4_RS02910 4ae57db01e11d75d66cce82809637327 401 Pfam PF01139 tRNA-splicing ligase RtcB 28 401 1.3E-133 T 22-04-2016 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 PP4_RS02910 4ae57db01e11d75d66cce82809637327 401 SUPERFAMILY SSF103365 5 401 6.28E-142 T 22-04-2016 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 PP4_RS02910 4ae57db01e11d75d66cce82809637327 401 PANTHER PTHR11118 1 401 1.7E-205 T 22-04-2016 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 PP4_RS26305 48ffa6aebca96ae6889c6c96d9992434 158 Pfam PF14347 Domain of unknown function (DUF4399) 55 158 4.4E-37 T 22-04-2016 IPR025512 Domain of unknown function DUF4399 PP4_RS19945 cb1dcb86bafff77c5e6bda007b33b6f3 123 Gene3D G3DSA:3.40.30.10 50 121 4.0E-23 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS19945 cb1dcb86bafff77c5e6bda007b33b6f3 123 SUPERFAMILY SSF52833 43 121 2.09E-19 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS19945 cb1dcb86bafff77c5e6bda007b33b6f3 123 ProSitePatterns PS00195 Glutaredoxin active site. 45 61 - T 22-04-2016 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 PP4_RS19945 cb1dcb86bafff77c5e6bda007b33b6f3 123 Pfam PF00462 Glutaredoxin 44 98 4.2E-13 T 22-04-2016 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 PP4_RS11365 141625db5e5e4ca32371ace552675591 426 Pfam PF03222 Tryptophan/tyrosine permease family 35 391 7.4E-12 T 22-04-2016 IPR018227 Tryptophan/tyrosine permease GO:0003333 PP4_RS11365 141625db5e5e4ca32371ace552675591 426 TIGRFAM TIGR00814 stp: serine transporter 23 415 5.6E-161 T 22-04-2016 IPR004694 Hydroxy amino acid transporter GO:0005215|GO:0006810|GO:0016021 PP4_RS11365 141625db5e5e4ca32371ace552675591 426 PANTHER PTHR35334 23 426 4.5E-232 T 22-04-2016 PP4_RS11365 141625db5e5e4ca32371ace552675591 426 PANTHER PTHR35334:SF2 23 426 4.5E-232 T 22-04-2016 PP4_RS10760 3dc72dbc1d5c19a959d986309271102d 311 TIGRFAM TIGR02439 catechol_proteo: catechol 1,2-dioxygenase 8 290 9.9E-151 T 22-04-2016 IPR012801 Catechol 1,2-dioxygenase, proteobacteria GO:0005506|GO:0018576|GO:0019614|GO:0055114 KEGG: 00361+1.13.11.1|KEGG: 00362+1.13.11.1|KEGG: 00364+1.13.11.1|KEGG: 00623+1.13.11.1|UniPathway: UPA00157 PP4_RS10760 3dc72dbc1d5c19a959d986309271102d 311 PANTHER PTHR33711:SF4 1 310 1.9E-127 T 22-04-2016 PP4_RS10760 3dc72dbc1d5c19a959d986309271102d 311 ProSitePatterns PS00083 Intradiol ring-cleavage dioxygenases signature. 135 163 - T 22-04-2016 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 PP4_RS10760 3dc72dbc1d5c19a959d986309271102d 311 Gene3D G3DSA:2.60.130.10 2 308 2.1E-110 T 22-04-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 PP4_RS10760 3dc72dbc1d5c19a959d986309271102d 311 PANTHER PTHR33711 1 310 1.9E-127 T 22-04-2016 PP4_RS10760 3dc72dbc1d5c19a959d986309271102d 311 Pfam PF00775 Dioxygenase 105 292 2.3E-72 T 22-04-2016 IPR000627 Intradiol ring-cleavage dioxygenase, C-terminal GO:0003824|GO:0006725|GO:0008199|GO:0055114 PP4_RS10760 3dc72dbc1d5c19a959d986309271102d 311 SUPERFAMILY SSF49482 4 293 1.44E-94 T 22-04-2016 IPR015889 Intradiol ring-cleavage dioxygenase, core GO:0005506|GO:0016702|GO:0055114 PP4_RS10760 3dc72dbc1d5c19a959d986309271102d 311 Pfam PF04444 Catechol dioxygenase N terminus 27 95 1.3E-21 T 22-04-2016 IPR007535 Catechol dioxygenase, N-terminal GO:0005506|GO:0009712|GO:0018576|GO:0055114 PP4_RS05540 fbbd7f946e95d1948def0487cccaacc7 662 PANTHER PTHR30509 298 634 4.2E-128 T 22-04-2016 PP4_RS05540 fbbd7f946e95d1948def0487cccaacc7 662 PANTHER PTHR30509 8 249 4.2E-128 T 22-04-2016 PP4_RS05540 fbbd7f946e95d1948def0487cccaacc7 662 PANTHER PTHR30509:SF1 8 249 4.2E-128 T 22-04-2016 PP4_RS05540 fbbd7f946e95d1948def0487cccaacc7 662 PANTHER PTHR30509:SF1 298 634 4.2E-128 T 22-04-2016 PP4_RS05540 fbbd7f946e95d1948def0487cccaacc7 662 Pfam PF04632 Fusaric acid resistance protein family 17 652 3.4E-195 T 22-04-2016 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0006810 PP4_RS14780 cc1da7560a60a43dda9d2c83a7536c65 177 PANTHER PTHR30529:SF1 1 176 1.3E-49 T 22-04-2016 PP4_RS14780 cc1da7560a60a43dda9d2c83a7536c65 177 Pfam PF01292 Prokaryotic cytochrome b561 6 171 2.9E-27 T 22-04-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 PP4_RS14780 cc1da7560a60a43dda9d2c83a7536c65 177 PANTHER PTHR30529 1 176 1.3E-49 T 22-04-2016 PP4_RS14780 cc1da7560a60a43dda9d2c83a7536c65 177 Gene3D G3DSA:1.20.950.20 89 174 7.7E-6 T 22-04-2016 PP4_RS14780 cc1da7560a60a43dda9d2c83a7536c65 177 SUPERFAMILY SSF81342 3 175 1.1E-30 T 22-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 PP4_RS13390 69e37441b3ef168f5d5b8fe5534e7069 220 PANTHER PTHR33254:SF5 7 217 7.0E-20 T 22-04-2016 PP4_RS13390 69e37441b3ef168f5d5b8fe5534e7069 220 Pfam PF03737 Demethylmenaquinone methyltransferase 15 170 7.9E-27 T 22-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein PP4_RS13390 69e37441b3ef168f5d5b8fe5534e7069 220 PANTHER PTHR33254 7 217 7.0E-20 T 22-04-2016 PP4_RS13390 69e37441b3ef168f5d5b8fe5534e7069 220 Gene3D G3DSA:3.50.30.40 13 180 1.1E-34 T 22-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein PP4_RS13390 69e37441b3ef168f5d5b8fe5534e7069 220 SUPERFAMILY SSF89562 13 182 6.54E-31 T 22-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein PP4_RS07350 e63fe9a81cc0d6aebedd7270200d3eea 113 Pfam PF01312 FlhB HrpN YscU SpaS Family 5 78 3.3E-18 T 22-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 PP4_RS07350 e63fe9a81cc0d6aebedd7270200d3eea 113 Gene3D G3DSA:3.40.1690.10 7 83 8.8E-24 T 22-04-2016 IPR029025 Type III secretion system substrate exporter, C-terminal PP4_RS07350 e63fe9a81cc0d6aebedd7270200d3eea 113 PANTHER PTHR30531 5 93 1.2E-33 T 22-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 PP4_RS07350 e63fe9a81cc0d6aebedd7270200d3eea 113 SUPERFAMILY SSF160544 4 83 1.7E-21 T 22-04-2016 IPR029025 Type III secretion system substrate exporter, C-terminal PP4_RS11715 05dd552cb6260ad0d4492e162f8fbc0b 293 Gene3D G3DSA:2.120.10.30 121 284 3.5E-12 T 22-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like PP4_RS11715 05dd552cb6260ad0d4492e162f8fbc0b 293 SUPERFAMILY SSF101898 44 282 1.18E-16 T 22-04-2016 PP4_RS20040 572370f519558b7f2724c8b4ee59dd5b 408 Pfam PF01757 Acyltransferase family 12 367 4.8E-27 T 22-04-2016 IPR002656 Acyltransferase 3 GO:0016747 PP4_RS20040 572370f519558b7f2724c8b4ee59dd5b 408 PANTHER PTHR23028 13 256 5.5E-23 T 22-04-2016 PP4_RS20040 572370f519558b7f2724c8b4ee59dd5b 408 PANTHER PTHR23028 272 389 5.5E-23 T 22-04-2016 PP4_RS00605 43816fe227080a103556d9c167f00343 262 Pfam PF01510 N-acetylmuramoyl-L-alanine amidase 36 168 1.5E-23 T 22-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 PP4_RS00605 43816fe227080a103556d9c167f00343 262 SUPERFAMILY SSF47090 185 258 9.22E-20 T 22-04-2016 IPR002477 Peptidoglycan binding-like PP4_RS00605 43816fe227080a103556d9c167f00343 262 SMART SM00644 27 167 1.1E-33 T 22-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 PP4_RS00605 43816fe227080a103556d9c167f00343 262 PANTHER PTHR30417 34 260 6.9E-75 T 22-04-2016 PP4_RS00605 43816fe227080a103556d9c167f00343 262 Gene3D G3DSA:1.10.101.10 205 257 3.6E-4 T 22-04-2016 IPR002477 Peptidoglycan binding-like PP4_RS00605 43816fe227080a103556d9c167f00343 262 Pfam PF01471 Putative peptidoglycan binding domain 203 255 6.5E-10 T 22-04-2016 IPR002477 Peptidoglycan binding-like PP4_RS00605 43816fe227080a103556d9c167f00343 262 SUPERFAMILY SSF55846 23 183 2.09E-54 T 22-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 PP4_RS00605 43816fe227080a103556d9c167f00343 262 Gene3D G3DSA:3.40.80.10 29 186 2.6E-56 T 22-04-2016 IPR002502 N-acetylmuramoyl-L-alanine amidase domain GO:0008745|GO:0009253 PP4_RS27160 aa193a3e122c093cbaf9ab6aeb9045c4 132 PANTHER PTHR11049:SF5 3 131 1.2E-60 T 22-04-2016 PP4_RS27160 aa193a3e122c093cbaf9ab6aeb9045c4 132 PANTHER PTHR11049 3 131 1.2E-60 T 22-04-2016 PP4_RS27160 aa193a3e122c093cbaf9ab6aeb9045c4 132 SUPERFAMILY SSF54637 9 131 3.82E-31 T 22-04-2016 IPR029069 HotDog domain PP4_RS27160 aa193a3e122c093cbaf9ab6aeb9045c4 132 Pfam PF03061 Thioesterase superfamily 29 103 8.6E-16 T 22-04-2016 IPR006683 Thioesterase domain PP4_RS27160 aa193a3e122c093cbaf9ab6aeb9045c4 132 Gene3D G3DSA:3.10.129.10 7 131 5.1E-33 T 22-04-2016 IPR029069 HotDog domain PP4_RS10410 690894038914bf08621e69826388a207 463 Gene3D G3DSA:3.50.50.60 352 399 1.3E-41 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS10410 690894038914bf08621e69826388a207 463 Gene3D G3DSA:3.50.50.60 172 250 1.3E-41 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS10410 690894038914bf08621e69826388a207 463 Gene3D G3DSA:3.50.50.60 19 118 1.3E-41 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS10410 690894038914bf08621e69826388a207 463 PANTHER PTHR13847:SF208 2 437 1.9E-124 T 22-04-2016 PP4_RS10410 690894038914bf08621e69826388a207 463 Pfam PF01266 FAD dependent oxidoreductase 28 387 8.6E-50 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PP4_RS10410 690894038914bf08621e69826388a207 463 SUPERFAMILY SSF51905 16 121 3.89E-37 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS10410 690894038914bf08621e69826388a207 463 SUPERFAMILY SSF51905 176 299 3.89E-37 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS10410 690894038914bf08621e69826388a207 463 PANTHER PTHR13847 2 437 1.9E-124 T 22-04-2016 PP4_RS17285 c16719d4d7ac98bf4203dc914085c474 358 Pfam PF13407 Periplasmic binding protein domain 24 289 2.7E-24 T 22-04-2016 IPR025997 Periplasmic binding protein PP4_RS17285 c16719d4d7ac98bf4203dc914085c474 358 PANTHER PTHR32196:SF9 138 273 1.9E-16 T 22-04-2016 PP4_RS17285 c16719d4d7ac98bf4203dc914085c474 358 Gene3D G3DSA:3.40.50.2300 17 149 1.1E-5 T 22-04-2016 PP4_RS17285 c16719d4d7ac98bf4203dc914085c474 358 SUPERFAMILY SSF53822 24 297 7.5E-46 T 22-04-2016 IPR028082 Periplasmic binding protein-like I PP4_RS17285 c16719d4d7ac98bf4203dc914085c474 358 Gene3D G3DSA:3.40.50.2300 150 305 6.7E-31 T 22-04-2016 PP4_RS17285 c16719d4d7ac98bf4203dc914085c474 358 PANTHER PTHR32196 138 273 1.9E-16 T 22-04-2016 PP4_RS12510 0debf9fe8706336d05aa7dc0e7c482bd 142 Gene3D G3DSA:1.25.40.10 20 118 6.5E-9 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS12510 0debf9fe8706336d05aa7dc0e7c482bd 142 SUPERFAMILY SSF48452 19 120 9.28E-10 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS14145 68936acd83dcdcdb72a66d1d3d6679f2 314 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 120 276 2.4E-47 T 22-04-2016 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 PP4_RS14145 68936acd83dcdcdb72a66d1d3d6679f2 314 SUPERFAMILY SSF51735 100 277 1.38E-48 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS14145 68936acd83dcdcdb72a66d1d3d6679f2 314 Gene3D G3DSA:3.40.50.720 109 278 5.9E-56 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS14145 68936acd83dcdcdb72a66d1d3d6679f2 314 PANTHER PTHR10996 89 309 2.6E-69 T 22-04-2016 PP4_RS14145 68936acd83dcdcdb72a66d1d3d6679f2 314 Gene3D G3DSA:3.40.50.720 11 108 4.7E-8 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS01930 7ee52bcd24d36f31d9690fa41b2f7114 370 PANTHER PTHR34219 1 369 6.5E-69 T 22-04-2016 PP4_RS01930 7ee52bcd24d36f31d9690fa41b2f7114 370 Pfam PF03929 PepSY-associated TM region 12 361 4.8E-50 T 22-04-2016 IPR005625 PepSY-associated TM protein PP4_RS01930 7ee52bcd24d36f31d9690fa41b2f7114 370 PANTHER PTHR34219:SF3 1 369 6.5E-69 T 22-04-2016 PP4_RS01410 ed71acd40f64c8dcb9a56c512cd4a12d 159 Pfam PF13488 Glycine zipper 77 120 5.3E-5 T 22-04-2016 PP4_RS05120 f8aba30e24f5e1cbca592875a70de31f 331 Pfam PF00561 alpha/beta hydrolase fold 50 300 3.8E-23 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS05120 f8aba30e24f5e1cbca592875a70de31f 331 Gene3D G3DSA:3.40.50.1820 31 319 3.0E-62 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS05120 f8aba30e24f5e1cbca592875a70de31f 331 PANTHER PTHR10992 116 320 2.5E-52 T 22-04-2016 PP4_RS05120 f8aba30e24f5e1cbca592875a70de31f 331 PANTHER PTHR10992 39 95 2.5E-52 T 22-04-2016 PP4_RS05120 f8aba30e24f5e1cbca592875a70de31f 331 PANTHER PTHR10992:SF732 116 320 2.5E-52 T 22-04-2016 PP4_RS05120 f8aba30e24f5e1cbca592875a70de31f 331 PANTHER PTHR10992:SF732 39 95 2.5E-52 T 22-04-2016 PP4_RS05120 f8aba30e24f5e1cbca592875a70de31f 331 SUPERFAMILY SSF53474 29 318 4.56E-59 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS07550 522087567257d955e93f275c2664841e 442 Pfam PF06181 Protein of unknown function (DUF989) 4 293 5.6E-126 T 22-04-2016 IPR010389 Domain of unknown function DUF989 PP4_RS00430 0e0f4897afc880c7f07c4b38ffdaeac0 182 PANTHER PTHR13061 3 176 3.1E-69 T 22-04-2016 PP4_RS00430 0e0f4897afc880c7f07c4b38ffdaeac0 182 Gene3D G3DSA:2.160.10.10 3 173 1.0E-39 T 22-04-2016 PP4_RS00430 0e0f4897afc880c7f07c4b38ffdaeac0 182 PANTHER PTHR13061:SF11 3 176 3.1E-69 T 22-04-2016 PP4_RS00430 0e0f4897afc880c7f07c4b38ffdaeac0 182 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 17 45 6.0E-5 T 22-04-2016 IPR001451 Hexapeptide repeat PP4_RS00430 0e0f4897afc880c7f07c4b38ffdaeac0 182 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 95 128 4.8E-5 T 22-04-2016 IPR001451 Hexapeptide repeat PP4_RS00430 0e0f4897afc880c7f07c4b38ffdaeac0 182 SUPERFAMILY SSF51161 3 173 7.76E-41 T 22-04-2016 IPR011004 Trimeric LpxA-like PP4_RS08120 d84916b936b8cb20d82173cded751eb0 284 PANTHER PTHR10992:SF909 16 283 3.3E-45 T 22-04-2016 PP4_RS08120 d84916b936b8cb20d82173cded751eb0 284 SUPERFAMILY SSF53474 6 281 7.84E-48 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS08120 d84916b936b8cb20d82173cded751eb0 284 Gene3D G3DSA:3.40.50.1820 4 277 1.3E-50 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS08120 d84916b936b8cb20d82173cded751eb0 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 98 111 6.9E-8 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS08120 d84916b936b8cb20d82173cded751eb0 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 112 125 6.9E-8 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS08120 d84916b936b8cb20d82173cded751eb0 284 PRINTS PR00111 Alpha/beta hydrolase fold signature 52 67 6.9E-8 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS08120 d84916b936b8cb20d82173cded751eb0 284 PANTHER PTHR10992 16 283 3.3E-45 T 22-04-2016 PP4_RS08120 d84916b936b8cb20d82173cded751eb0 284 Pfam PF00561 alpha/beta hydrolase fold 29 150 2.1E-21 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS19655 51f839b56d8386bca6991b46c6c824ca 360 PANTHER PTHR33420 228 360 1.6E-23 T 22-04-2016 PP4_RS19655 51f839b56d8386bca6991b46c6c824ca 360 Gene3D G3DSA:2.60.40.1090 208 360 2.2E-22 T 22-04-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PP4_RS19655 51f839b56d8386bca6991b46c6c824ca 360 Pfam PF00419 Fimbrial protein 208 360 2.3E-8 T 22-04-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PP4_RS19655 51f839b56d8386bca6991b46c6c824ca 360 SUPERFAMILY SSF49401 207 360 8.45E-21 T 22-04-2016 IPR008966 Adhesion domain PP4_RS16140 d923ef46f2fcba290b0fd3d2e2fd13a4 147 Gene3D G3DSA:3.30.300.30 1 49 1.7E-11 T 22-04-2016 PP4_RS16140 d923ef46f2fcba290b0fd3d2e2fd13a4 147 SUPERFAMILY SSF56801 1 54 1.03E-12 T 22-04-2016 PP4_RS16140 d923ef46f2fcba290b0fd3d2e2fd13a4 147 PANTHER PTHR24096 1 42 2.0E-14 T 22-04-2016 PP4_RS16140 d923ef46f2fcba290b0fd3d2e2fd13a4 147 Pfam PF00144 Beta-lactamase 59 116 2.8E-4 T 22-04-2016 IPR001466 Beta-lactamase-related PP4_RS16140 d923ef46f2fcba290b0fd3d2e2fd13a4 147 PANTHER PTHR24096:SF232 1 42 2.0E-14 T 22-04-2016 PP4_RS16140 d923ef46f2fcba290b0fd3d2e2fd13a4 147 Pfam PF13193 AMP-binding enzyme C-terminal domain 13 41 9.8E-6 T 22-04-2016 IPR025110 AMP-binding enzyme C-terminal domain PP4_RS16140 d923ef46f2fcba290b0fd3d2e2fd13a4 147 SUPERFAMILY SSF56601 43 112 2.53E-8 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS14630 019a159d584afb00753806e98c57914a 688 Gene3D G3DSA:3.20.20.80 81 204 2.3E-18 T 22-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PP4_RS14630 019a159d584afb00753806e98c57914a 688 Gene3D G3DSA:3.20.20.80 250 423 2.3E-18 T 22-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PP4_RS14630 019a159d584afb00753806e98c57914a 688 TIGRFAM TIGR02455 TreS_stutzeri: trehalose synthase 1 688 0.0 T 22-04-2016 IPR012665 Trehalose synthase PP4_RS14630 019a159d584afb00753806e98c57914a 688 SUPERFAMILY SSF51445 491 549 5.4E-36 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily PP4_RS14630 019a159d584afb00753806e98c57914a 688 SUPERFAMILY SSF51445 225 450 5.4E-36 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily PP4_RS14630 019a159d584afb00753806e98c57914a 688 SUPERFAMILY SSF51445 53 182 5.4E-36 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily PP4_RS08305 8e9d58340b43d366b0b3e1380395ecdf 102 PANTHER PTHR11434 5 102 2.1E-61 T 22-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 PP4_RS08305 8e9d58340b43d366b0b3e1380395ecdf 102 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 10 96 1.7E-23 T 22-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 PP4_RS08305 8e9d58340b43d366b0b3e1380395ecdf 102 Hamap MF_01456 NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic [ndhE]. 4 102 18.92 T 22-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 PP4_RS08305 8e9d58340b43d366b0b3e1380395ecdf 102 PANTHER PTHR11434:SF4 5 102 2.1E-61 T 22-04-2016 PP4_RS17015 b95ccb3b6e30d0b36416567c744ed969 248 Gene3D G3DSA:2.40.160.20 116 246 2.5E-5 T 22-04-2016 IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel GO:0016021 PP4_RS17015 b95ccb3b6e30d0b36416567c744ed969 248 Pfam PF13505 Outer membrane protein beta-barrel domain 13 179 3.6E-10 T 22-04-2016 IPR027385 Outer membrane protein beta-barrel PP4_RS12900 24d36eb67eff520ad6189ee7e35df4ad 439 TIGRFAM TIGR04416 group_II_RT_mat: group II intron reverse transcriptase/maturase 63 406 3.3E-125 T 22-04-2016 IPR030931 Group II intron reverse transcriptase/maturase PP4_RS12900 24d36eb67eff520ad6189ee7e35df4ad 439 PANTHER PTHR34047 38 247 3.3E-64 T 22-04-2016 PP4_RS12900 24d36eb67eff520ad6189ee7e35df4ad 439 Pfam PF08388 Group II intron, maturase-specific domain 343 416 1.6E-19 T 22-04-2016 IPR013597 Group II intron, maturase-specific PP4_RS12900 24d36eb67eff520ad6189ee7e35df4ad 439 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 240 253 1.1E-5 T 22-04-2016 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 PP4_RS12900 24d36eb67eff520ad6189ee7e35df4ad 439 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 114 127 1.1E-5 T 22-04-2016 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 PP4_RS12900 24d36eb67eff520ad6189ee7e35df4ad 439 PRINTS PR00866 RNA-dependent DNA-polymerase (msDNA) signature 182 200 1.1E-5 T 22-04-2016 IPR000123 RNA-directed DNA polymerase (reverse transcriptase), msDNA GO:0003723|GO:0003964|GO:0006278 PP4_RS12900 24d36eb67eff520ad6189ee7e35df4ad 439 SUPERFAMILY SSF56672 68 405 2.8E-59 T 22-04-2016 PP4_RS12900 24d36eb67eff520ad6189ee7e35df4ad 439 Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) 119 324 1.9E-48 T 22-04-2016 IPR000477 Reverse transcriptase domain PP4_RS22980 0748068671a6a5641f6c2e6ce7807774 499 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 14 437 1.1E-44 T 22-04-2016 IPR001248 Purine-cytosine permease GO:0005215|GO:0016020|GO:0055085 PP4_RS22980 0748068671a6a5641f6c2e6ce7807774 499 PIRSF PIRSF002744 1 480 5.1E-98 T 22-04-2016 IPR026030 Purine-cytosine permease Fcy2/21/22 GO:0005215|GO:0016021|GO:0055085 PP4_RS22980 0748068671a6a5641f6c2e6ce7807774 499 PANTHER PTHR31806:SF2 7 481 1.8E-208 T 22-04-2016 PP4_RS22980 0748068671a6a5641f6c2e6ce7807774 499 PANTHER PTHR31806 7 481 1.8E-208 T 22-04-2016 PP4_RS26715 af1cc7aca58e5b7e87a9edd626d434c1 276 PANTHER PTHR31689:SF0 1 276 4.3E-137 T 22-04-2016 PP4_RS26715 af1cc7aca58e5b7e87a9edd626d434c1 276 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 66 80 - T 22-04-2016 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 PP4_RS26715 af1cc7aca58e5b7e87a9edd626d434c1 276 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 3 276 40.276 T 22-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 PP4_RS26715 af1cc7aca58e5b7e87a9edd626d434c1 276 PANTHER PTHR31689 1 276 4.3E-137 T 22-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 PP4_RS26715 af1cc7aca58e5b7e87a9edd626d434c1 276 Gene3D G3DSA:3.10.310.10 3 122 1.2E-50 T 22-04-2016 PP4_RS26715 af1cc7aca58e5b7e87a9edd626d434c1 276 Gene3D G3DSA:3.10.310.10 123 264 2.6E-53 T 22-04-2016 PP4_RS26715 af1cc7aca58e5b7e87a9edd626d434c1 276 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 4 274 2.4E-93 T 22-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 PP4_RS26715 af1cc7aca58e5b7e87a9edd626d434c1 276 SUPERFAMILY SSF54506 3 276 4.64E-56 T 22-04-2016 PP4_RS26715 af1cc7aca58e5b7e87a9edd626d434c1 276 Pfam PF01678 Diaminopimelate epimerase 5 125 6.5E-33 T 22-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 PP4_RS26715 af1cc7aca58e5b7e87a9edd626d434c1 276 Pfam PF01678 Diaminopimelate epimerase 154 269 3.4E-31 T 22-04-2016 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097|UniPathway: UPA00034 PP4_RS06210 3b1f7be1caf6d082fc53ed17408af10a 238 Gene3D G3DSA:1.10.10.10 10 79 1.1E-17 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS06210 3b1f7be1caf6d082fc53ed17408af10a 238 PANTHER PTHR11751 190 208 3.9E-15 T 22-04-2016 PP4_RS06210 3b1f7be1caf6d082fc53ed17408af10a 238 PANTHER PTHR11751 21 81 3.9E-15 T 22-04-2016 PP4_RS06210 3b1f7be1caf6d082fc53ed17408af10a 238 SMART SM00895 88 218 2.5E-12 T 22-04-2016 IPR011711 GntR, C-terminal PP4_RS06210 3b1f7be1caf6d082fc53ed17408af10a 238 SMART SM00345 20 78 1.0E-6 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS06210 3b1f7be1caf6d082fc53ed17408af10a 238 Pfam PF07729 FCD domain 95 217 6.7E-19 T 22-04-2016 IPR011711 GntR, C-terminal PP4_RS06210 3b1f7be1caf6d082fc53ed17408af10a 238 Pfam PF00392 Bacterial regulatory proteins, gntR family 20 75 9.1E-11 T 22-04-2016 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 PP4_RS06210 3b1f7be1caf6d082fc53ed17408af10a 238 SUPERFAMILY SSF48008 97 225 7.06E-20 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PP4_RS06210 3b1f7be1caf6d082fc53ed17408af10a 238 PANTHER PTHR11751:SF362 190 208 3.9E-15 T 22-04-2016 PP4_RS06210 3b1f7be1caf6d082fc53ed17408af10a 238 PANTHER PTHR11751:SF362 21 81 3.9E-15 T 22-04-2016 PP4_RS06210 3b1f7be1caf6d082fc53ed17408af10a 238 SUPERFAMILY SSF46785 16 82 1.66E-13 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS06210 3b1f7be1caf6d082fc53ed17408af10a 238 Gene3D G3DSA:1.20.120.530 85 226 2.4E-20 T 22-04-2016 IPR008920 Transcription regulator FadR/GntR, C-terminal PP4_RS03905 6fddcff5179f4641946b96d8c1253b2f 308 PIRSF PIRSF018266 1 306 1.6E-84 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS03905 6fddcff5179f4641946b96d8c1253b2f 308 PANTHER PTHR30273:SF3 3 307 8.2E-94 T 22-04-2016 PP4_RS03905 6fddcff5179f4641946b96d8c1253b2f 308 Pfam PF16220 Domain of unknown function (DUF4880) 11 53 2.7E-10 T 22-04-2016 IPR032623 FecR, N-terminal PP4_RS03905 6fddcff5179f4641946b96d8c1253b2f 308 Pfam PF04773 FecR protein 109 199 1.2E-13 T 22-04-2016 IPR006860 FecR protein PP4_RS03905 6fddcff5179f4641946b96d8c1253b2f 308 PANTHER PTHR30273 3 307 8.2E-94 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS26990 fdb0c62e9eb23a9957e5aa7de3417548 513 PANTHER PTHR11785 30 422 2.8E-16 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS26990 fdb0c62e9eb23a9957e5aa7de3417548 513 PANTHER PTHR11785 458 503 2.8E-16 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS26990 fdb0c62e9eb23a9957e5aa7de3417548 513 PIRSF PIRSF006060 8 508 5.4E-57 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS26990 fdb0c62e9eb23a9957e5aa7de3417548 513 Pfam PF13520 Amino acid permease 33 448 5.4E-24 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS25825 3ebb50cdf81557101c00ea58c3edf1fb 667 Pfam PF02028 BCCT, betaine/carnitine/choline family transporter 20 512 2.3E-169 T 22-04-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 PP4_RS25825 3ebb50cdf81557101c00ea58c3edf1fb 667 PANTHER PTHR30047:SF6 12 662 0.0 T 22-04-2016 PP4_RS25825 3ebb50cdf81557101c00ea58c3edf1fb 667 PANTHER PTHR30047 12 662 0.0 T 22-04-2016 PP4_RS25825 3ebb50cdf81557101c00ea58c3edf1fb 667 TIGRFAM TIGR00842 bcct: transporter, betaine/carnitine/choline transporter (BCCT) family 58 512 6.0E-150 T 22-04-2016 IPR000060 BCCT transporter family GO:0005215|GO:0006810|GO:0016020 PP4_RS07735 80486e279978b482de3ab8c644228b6d 202 PANTHER PTHR10422 15 159 1.6E-90 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS07735 80486e279978b482de3ab8c644228b6d 202 Pfam PF02433 Cytochrome C oxidase, mono-heme subunit/FixO 3 179 1.6E-81 T 22-04-2016 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO PP4_RS07735 80486e279978b482de3ab8c644228b6d 202 PANTHER PTHR10422:SF23 15 159 1.6E-90 T 22-04-2016 PP4_RS07735 80486e279978b482de3ab8c644228b6d 202 TIGRFAM TIGR00781 ccoO: cytochrome c oxidase, cbb3-type, subunit II 4 178 1.3E-83 T 22-04-2016 IPR003468 Cytochrome c oxidase, monohaem subunit/FixO PP4_RS07735 80486e279978b482de3ab8c644228b6d 202 SUPERFAMILY SSF46626 15 195 2.42E-30 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS07735 80486e279978b482de3ab8c644228b6d 202 Gene3D G3DSA:1.10.760.10 15 195 4.6E-38 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS11545 ca8c8b427de41990117122b02e37e5bf 439 Pfam PF03553 Na+/H+ antiporter family 149 433 9.4E-78 T 22-04-2016 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 PP4_RS11545 ca8c8b427de41990117122b02e37e5bf 439 PRINTS PR00173 Glutamate-aspartate symporter signature 15 35 5.9E-5 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS11545 ca8c8b427de41990117122b02e37e5bf 439 PRINTS PR00173 Glutamate-aspartate symporter signature 251 270 5.9E-5 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS11545 ca8c8b427de41990117122b02e37e5bf 439 PRINTS PR00173 Glutamate-aspartate symporter signature 372 391 5.9E-5 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS11545 ca8c8b427de41990117122b02e37e5bf 439 Pfam PF13726 Na+-H+ antiporter family 2 88 4.2E-32 T 22-04-2016 IPR032813 Putative Na+/H+ antiporter, N-terminal PP4_RS11545 ca8c8b427de41990117122b02e37e5bf 439 PANTHER PTHR37821 1 439 7.8E-196 T 22-04-2016 PP4_RS27175 5790934c59d5258951a96fcada95628e 81 PANTHER PTHR33884 1 81 5.9E-29 T 22-04-2016 PP4_RS27175 5790934c59d5258951a96fcada95628e 81 Pfam PF04226 Transglycosylase associated protein 33 80 3.9E-13 T 22-04-2016 IPR007341 Transglycosylase-associated protein GO:0016021 PP4_RS27175 5790934c59d5258951a96fcada95628e 81 PANTHER PTHR33884:SF1 1 81 5.9E-29 T 22-04-2016 PP4_RS13835 6eb3c34dcbe348f77f645e46b46303e4 125 SUPERFAMILY SSF54427 3 124 2.28E-29 T 22-04-2016 IPR032710 NTF2-like domain PP4_RS13835 6eb3c34dcbe348f77f645e46b46303e4 125 Gene3D G3DSA:3.10.450.50 1 124 4.4E-40 T 22-04-2016 IPR032710 NTF2-like domain PP4_RS13835 6eb3c34dcbe348f77f645e46b46303e4 125 PIRSF PIRSF029394 1 125 5.9E-36 T 22-04-2016 IPR016918 Uncharacterised conserved protein UCP029394 PP4_RS07040 aae319326ab8a924218773cc62bf01e8 246 PANTHER PTHR30435 1 245 1.3E-91 T 22-04-2016 PP4_RS07040 aae319326ab8a924218773cc62bf01e8 246 SUPERFAMILY SSF117143 77 204 1.31E-15 T 22-04-2016 PP4_RS07040 aae319326ab8a924218773cc62bf01e8 246 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 121 1.4E-31 T 22-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G PP4_RS07040 aae319326ab8a924218773cc62bf01e8 246 PANTHER PTHR30435:SF18 1 245 1.3E-91 T 22-04-2016 PP4_RS07040 aae319326ab8a924218773cc62bf01e8 246 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 171 239 2.6E-20 T 22-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain PP4_RS07040 aae319326ab8a924218773cc62bf01e8 246 Pfam PF00460 Flagella basal body rod protein 5 35 3.2E-7 T 22-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 PP4_RS10035 0eefe0d80745e70ab7082d1a08bb2d85 308 PANTHER PTHR30118 1 303 2.5E-144 T 22-04-2016 PP4_RS10035 0eefe0d80745e70ab7082d1a08bb2d85 308 SUPERFAMILY SSF53850 90 293 1.23E-49 T 22-04-2016 PP4_RS10035 0eefe0d80745e70ab7082d1a08bb2d85 308 PANTHER PTHR30118:SF4 1 303 2.5E-144 T 22-04-2016 PP4_RS10035 0eefe0d80745e70ab7082d1a08bb2d85 308 Gene3D G3DSA:1.10.10.10 1 86 2.5E-29 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS10035 0eefe0d80745e70ab7082d1a08bb2d85 308 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 8 67 6.2E-16 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS10035 0eefe0d80745e70ab7082d1a08bb2d85 308 Gene3D G3DSA:3.40.190.10 90 172 1.1E-31 T 22-04-2016 PP4_RS10035 0eefe0d80745e70ab7082d1a08bb2d85 308 Gene3D G3DSA:3.40.190.10 269 297 1.1E-31 T 22-04-2016 PP4_RS10035 0eefe0d80745e70ab7082d1a08bb2d85 308 SUPERFAMILY SSF46785 2 85 2.67E-18 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS10035 0eefe0d80745e70ab7082d1a08bb2d85 308 Gene3D G3DSA:3.40.190.10 173 265 2.2E-28 T 22-04-2016 PP4_RS10035 0eefe0d80745e70ab7082d1a08bb2d85 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 1.9E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS10035 0eefe0d80745e70ab7082d1a08bb2d85 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 1.9E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS10035 0eefe0d80745e70ab7082d1a08bb2d85 308 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 1.9E-6 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS10035 0eefe0d80745e70ab7082d1a08bb2d85 308 Pfam PF03466 LysR substrate binding domain 93 294 9.6E-29 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS02740 9bfd52bfebebf82352e05230f84209a6 281 SUPERFAMILY SSF53474 33 198 9.86E-20 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS02740 9bfd52bfebebf82352e05230f84209a6 281 SUPERFAMILY SSF53474 225 256 9.86E-20 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS02740 9bfd52bfebebf82352e05230f84209a6 281 Gene3D G3DSA:3.40.50.1820 32 270 6.8E-19 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS02740 9bfd52bfebebf82352e05230f84209a6 281 Pfam PF12146 Serine aminopeptidase, S33 52 158 2.4E-8 T 22-04-2016 IPR022742 Serine aminopeptidase, S33 PP4_RS02745 bfde40c9cca5b5173bde58d141deb7b0 263 PANTHER PTHR30269:SF0 4 256 2.4E-71 T 22-04-2016 PP4_RS02745 bfde40c9cca5b5173bde58d141deb7b0 263 PANTHER PTHR30269 4 256 2.4E-71 T 22-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 PP4_RS02745 bfde40c9cca5b5173bde58d141deb7b0 263 Pfam PF01925 Sulfite exporter TauE/SafE 12 247 8.8E-47 T 22-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 PP4_RS24465 559d16357f1e6056dee9fe66fd5addb7 181 SMART SM00671 96 131 1.5E-7 T 22-04-2016 IPR006597 Sel1-like repeat PP4_RS24465 559d16357f1e6056dee9fe66fd5addb7 181 SMART SM00671 62 95 1.5E-7 T 22-04-2016 IPR006597 Sel1-like repeat PP4_RS24465 559d16357f1e6056dee9fe66fd5addb7 181 Gene3D G3DSA:1.25.40.10 23 138 1.2E-25 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS24465 559d16357f1e6056dee9fe66fd5addb7 181 Pfam PF08238 Sel1 repeat 62 94 5.2E-6 T 22-04-2016 IPR006597 Sel1-like repeat PP4_RS24465 559d16357f1e6056dee9fe66fd5addb7 181 Pfam PF08238 Sel1 repeat 96 127 3.0E-7 T 22-04-2016 IPR006597 Sel1-like repeat PP4_RS24465 559d16357f1e6056dee9fe66fd5addb7 181 SUPERFAMILY SSF81901 22 134 3.14E-20 T 22-04-2016 PP4_RS24465 559d16357f1e6056dee9fe66fd5addb7 181 PANTHER PTHR11102 43 135 2.6E-15 T 22-04-2016 PP4_RS10780 8889a4a03e66254ffb981604d28f40df 292 SUPERFAMILY SSF103481 57 151 3.66E-13 T 22-04-2016 PP4_RS10780 8889a4a03e66254ffb981604d28f40df 292 PANTHER PTHR22911:SF70 10 291 4.1E-101 T 22-04-2016 PP4_RS10780 8889a4a03e66254ffb981604d28f40df 292 PANTHER PTHR22911 10 291 4.1E-101 T 22-04-2016 PP4_RS10780 8889a4a03e66254ffb981604d28f40df 292 SUPERFAMILY SSF103481 194 290 1.7E-12 T 22-04-2016 PP4_RS10780 8889a4a03e66254ffb981604d28f40df 292 Pfam PF00892 EamA-like transporter family 15 147 2.3E-15 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS10780 8889a4a03e66254ffb981604d28f40df 292 Pfam PF00892 EamA-like transporter family 158 281 1.4E-8 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS07780 e6517598b16e34b5e65c5723667561fa 266 Gene3D G3DSA:3.40.190.10 120 215 5.8E-6 T 22-04-2016 PP4_RS07780 e6517598b16e34b5e65c5723667561fa 266 Gene3D G3DSA:3.40.190.10 32 116 2.0E-6 T 22-04-2016 PP4_RS07780 e6517598b16e34b5e65c5723667561fa 266 Gene3D G3DSA:3.40.190.10 220 257 2.0E-6 T 22-04-2016 PP4_RS07780 e6517598b16e34b5e65c5723667561fa 266 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 33 257 3.8E-14 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS07780 e6517598b16e34b5e65c5723667561fa 266 SUPERFAMILY SSF53850 32 257 5.64E-26 T 22-04-2016 PP4_RS07780 e6517598b16e34b5e65c5723667561fa 266 SMART SM00062 32 261 0.002 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS15515 4f439cc09a2cff3b47805d1b23f9ae12 345 SUPERFAMILY SSF55781 29 170 4.8E-26 T 22-04-2016 IPR029016 GAF domain-like PP4_RS15515 4f439cc09a2cff3b47805d1b23f9ae12 345 SMART SM00267 170 341 9.8E-41 T 22-04-2016 IPR000160 GGDEF domain PP4_RS15515 4f439cc09a2cff3b47805d1b23f9ae12 345 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 178 340 1.8E-42 T 22-04-2016 IPR000160 GGDEF domain PP4_RS15515 4f439cc09a2cff3b47805d1b23f9ae12 345 Pfam PF01590 GAF domain 30 154 4.7E-10 T 22-04-2016 IPR003018 GAF domain GO:0005515 PP4_RS15515 4f439cc09a2cff3b47805d1b23f9ae12 345 Gene3D G3DSA:3.30.70.270 184 340 7.5E-47 T 22-04-2016 PP4_RS15515 4f439cc09a2cff3b47805d1b23f9ae12 345 PANTHER PTHR33121:SF7 9 156 9.7E-45 T 22-04-2016 PP4_RS15515 4f439cc09a2cff3b47805d1b23f9ae12 345 PANTHER PTHR33121 9 156 9.7E-45 T 22-04-2016 PP4_RS15515 4f439cc09a2cff3b47805d1b23f9ae12 345 SMART SM00065 26 168 4.6E-11 T 22-04-2016 IPR003018 GAF domain GO:0005515 PP4_RS15515 4f439cc09a2cff3b47805d1b23f9ae12 345 SUPERFAMILY SSF55073 186 341 3.3E-41 T 22-04-2016 IPR029787 Nucleotide cyclase PP4_RS15515 4f439cc09a2cff3b47805d1b23f9ae12 345 Pfam PF00990 Diguanylate cyclase, GGDEF domain 181 337 3.1E-37 T 22-04-2016 IPR000160 GGDEF domain PP4_RS15515 4f439cc09a2cff3b47805d1b23f9ae12 345 Gene3D G3DSA:3.30.450.40 28 166 6.5E-13 T 22-04-2016 IPR029016 GAF domain-like PP4_RS27390 916b50a114c947e6fe24c903ca572844 156 TIGRFAM TIGR01144 ATP_synt_b: ATP synthase F0, B subunit 10 155 3.2E-46 T 22-04-2016 IPR005864 ATPase, F0 complex, subunit B, bacterial GO:0015078|GO:0015986|GO:0045263 PP4_RS27390 916b50a114c947e6fe24c903ca572844 156 Gene3D G3DSA:1.20.5.620 63 122 5.4E-19 T 22-04-2016 IPR028987 F-type ATP synthase subunit B-like, membrane domain PP4_RS27390 916b50a114c947e6fe24c903ca572844 156 SUPERFAMILY SSF81573 63 121 7.19E-13 T 22-04-2016 IPR028987 F-type ATP synthase subunit B-like, membrane domain PP4_RS27390 916b50a114c947e6fe24c903ca572844 156 PANTHER PTHR33445 1 156 7.2E-47 T 22-04-2016 PP4_RS27390 916b50a114c947e6fe24c903ca572844 156 Hamap MF_01398 ATP synthase subunit b [atpF]. 1 156 12.764 T 22-04-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 PP4_RS27390 916b50a114c947e6fe24c903ca572844 156 Pfam PF00430 ATP synthase B/B' CF(0) 6 136 8.3E-37 T 22-04-2016 IPR002146 ATPase, F0 complex, subunit B/B', bacterial/chloroplast GO:0015078|GO:0015986|GO:0045263 PP4_RS18570 a8e599ac06b5b4afaf75cbc6fecd7862 169 Gene3D G3DSA:2.60.40.420 24 169 1.6E-48 T 22-04-2016 IPR008972 Cupredoxin PP4_RS18570 a8e599ac06b5b4afaf75cbc6fecd7862 169 Pfam PF00127 Copper binding proteins, plastocyanin/azurin family 41 169 6.3E-10 T 22-04-2016 IPR000923 Blue (type 1) copper domain GO:0005507|GO:0009055 PP4_RS18570 a8e599ac06b5b4afaf75cbc6fecd7862 169 SUPERFAMILY SSF49503 36 169 2.42E-26 T 22-04-2016 IPR008972 Cupredoxin PP4_RS24885 82cc88c6fe35247c707fdfc1db08c39a 401 Pfam PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family 172 398 8.6E-82 T 22-04-2016 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 PP4_RS24885 82cc88c6fe35247c707fdfc1db08c39a 401 PANTHER PTHR11098 1 401 1.8E-196 T 22-04-2016 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 PP4_RS24885 82cc88c6fe35247c707fdfc1db08c39a 401 SUPERFAMILY SSF51690 122 397 1.96E-86 T 22-04-2016 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: REACT_11193|UniPathway: UPA00253 PP4_RS24885 82cc88c6fe35247c707fdfc1db08c39a 401 Gene3D G3DSA:3.20.140.10 4 380 3.9E-137 T 22-04-2016 PP4_RS24885 82cc88c6fe35247c707fdfc1db08c39a 401 PANTHER PTHR11098:SF16 1 401 1.8E-196 T 22-04-2016 PP4_RS24885 82cc88c6fe35247c707fdfc1db08c39a 401 PIRSF PIRSF000484 1 385 2.4E-62 T 22-04-2016 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 PP4_RS24885 82cc88c6fe35247c707fdfc1db08c39a 401 SUPERFAMILY SSF54675 5 139 8.83E-43 T 22-04-2016 PP4_RS24885 82cc88c6fe35247c707fdfc1db08c39a 401 TIGRFAM TIGR01514 NAPRTase: nicotinate phosphoribosyltransferase 10 398 7.8E-147 T 22-04-2016 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 PP4_RS24885 82cc88c6fe35247c707fdfc1db08c39a 401 Hamap MF_00570 Nicotinate phosphoribosyltransferase [pncB]. 7 399 48.37 T 22-04-2016 IPR006406 Nicotinate phosphoribosyltransferase GO:0004516|GO:0019357 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|UniPathway: UPA00253 PP4_RS11345 b8dfaadc060b4bca50260d55d8e106f7 290 PANTHER PTHR30514:SF3 21 246 4.3E-14 T 22-04-2016 PP4_RS11345 b8dfaadc060b4bca50260d55d8e106f7 290 Pfam PF01418 Helix-turn-helix domain, rpiR family 7 76 1.4E-13 T 22-04-2016 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 PP4_RS11345 b8dfaadc060b4bca50260d55d8e106f7 290 Pfam PF01380 SIS domain 129 253 5.6E-8 T 22-04-2016 IPR001347 Sugar isomerase (SIS) GO:0005975|GO:0030246 Reactome: REACT_17015 PP4_RS11345 b8dfaadc060b4bca50260d55d8e106f7 290 PANTHER PTHR30514 21 246 4.3E-14 T 22-04-2016 PP4_RS11345 b8dfaadc060b4bca50260d55d8e106f7 290 SUPERFAMILY SSF53697 104 267 1.61E-14 T 22-04-2016 PP4_RS11345 b8dfaadc060b4bca50260d55d8e106f7 290 SUPERFAMILY SSF46689 3 80 2.51E-14 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS11345 b8dfaadc060b4bca50260d55d8e106f7 290 Gene3D G3DSA:1.10.10.10 2 79 1.8E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS11345 b8dfaadc060b4bca50260d55d8e106f7 290 Gene3D G3DSA:3.40.50.10490 109 268 1.8E-9 T 22-04-2016 PP4_RS16135 e25020ca5890cb23d709e52e6fc7d967 183 Pfam PF08922 Domain of unknown function (DUF1905) 10 92 1.6E-18 T 22-04-2016 IPR015018 Protein of unknown function DUF1905 PP4_RS16135 e25020ca5890cb23d709e52e6fc7d967 183 Gene3D G3DSA:2.40.30.100 9 93 1.6E-16 T 22-04-2016 PP4_RS16135 e25020ca5890cb23d709e52e6fc7d967 183 SUPERFAMILY SSF141694 9 94 9.15E-20 T 22-04-2016 PP4_RS16135 e25020ca5890cb23d709e52e6fc7d967 183 Pfam PF13376 Bacteriocin-protection, YdeI or OmpD-Associated 101 159 1.6E-20 T 22-04-2016 PP4_RS27085 2c58ba883025e9eb9e3f872e764c8054 185 Gene3D G3DSA:3.40.1410.10 11 177 7.0E-54 T 22-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain PP4_RS27085 2c58ba883025e9eb9e3f872e764c8054 185 Pfam PF04345 Chorismate lyase 11 180 1.8E-53 T 22-04-2016 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|UniPathway: UPA00232 PP4_RS27085 2c58ba883025e9eb9e3f872e764c8054 185 PANTHER PTHR38683 1 185 1.5E-52 T 22-04-2016 PP4_RS27085 2c58ba883025e9eb9e3f872e764c8054 185 Hamap MF_01632 Chorismate pyruvate-lyase [ubiC]. 11 179 26.83 T 22-04-2016 IPR007440 Chorismate--pyruvate lyase GO:0005737|GO:0006744|GO:0008813 KEGG: 00130+4.1.3.40|MetaCyc: PWY-5755|MetaCyc: PWY-5870|MetaCyc: PWY-6148|UniPathway: UPA00232 PP4_RS27085 2c58ba883025e9eb9e3f872e764c8054 185 SUPERFAMILY SSF64288 10 178 3.62E-52 T 22-04-2016 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain PP4_RS19550 58c32a972336bb3a2da7e09ba6d157a3 1079 PANTHER PTHR30001 1 848 0.0 T 22-04-2016 PP4_RS19550 58c32a972336bb3a2da7e09ba6d157a3 1079 Pfam PF10150 Ribonuclease E/G family 119 388 1.0E-94 T 22-04-2016 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 PP4_RS19550 58c32a972336bb3a2da7e09ba6d157a3 1079 PANTHER PTHR30001:SF1 1 848 0.0 T 22-04-2016 PP4_RS19550 58c32a972336bb3a2da7e09ba6d157a3 1079 Pfam PF00575 S1 RNA binding domain 36 116 4.2E-15 T 22-04-2016 IPR003029 S1 domain GO:0003676 PP4_RS19550 58c32a972336bb3a2da7e09ba6d157a3 1079 Hamap MF_00970 Ribonuclease E [rne]. 1 1067 36.032 T 22-04-2016 IPR028878 Ribonuclease E GO:0006396|GO:0008995 PP4_RS19550 58c32a972336bb3a2da7e09ba6d157a3 1079 SMART SM00316 37 117 5.3E-13 T 22-04-2016 IPR022967 RNA-binding domain, S1 PP4_RS19550 58c32a972336bb3a2da7e09ba6d157a3 1079 SUPERFAMILY SSF50249 40 123 4.97E-19 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS19550 58c32a972336bb3a2da7e09ba6d157a3 1079 Gene3D G3DSA:2.40.50.140 31 123 9.9E-35 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS19550 58c32a972336bb3a2da7e09ba6d157a3 1079 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 13 422 1.3E-166 T 22-04-2016 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 PP4_RS18535 085e83b203c796f1f5557c8e6593fe65 160 PIRSF PIRSF029548 1 160 4.4E-107 T 22-04-2016 IPR014557 Uncharacterised conserved protein UCP029548, STAS-type PP4_RS18535 085e83b203c796f1f5557c8e6593fe65 160 Gene3D G3DSA:3.30.750.24 5 106 2.0E-14 T 22-04-2016 IPR002645 STAS domain PP4_RS18535 085e83b203c796f1f5557c8e6593fe65 160 SUPERFAMILY SSF52091 6 106 9.81E-14 T 22-04-2016 IPR002645 STAS domain PP4_RS00980 eb8d4fe301c032fe5f5058d2668bf02b 212 Gene3D G3DSA:3.10.50.40 96 210 3.0E-37 T 22-04-2016 PP4_RS00980 eb8d4fe301c032fe5f5058d2668bf02b 212 SUPERFAMILY SSF54534 23 210 2.55E-41 T 22-04-2016 PP4_RS00980 eb8d4fe301c032fe5f5058d2668bf02b 212 Pfam PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase 19 114 7.3E-12 T 22-04-2016 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 PP4_RS00980 eb8d4fe301c032fe5f5058d2668bf02b 212 Gene3D G3DSA:1.10.287.460 14 95 5.3E-17 T 22-04-2016 IPR000774 Peptidyl-prolyl cis-trans isomerase, FKBP-type, N-terminal GO:0006457 PP4_RS00980 eb8d4fe301c032fe5f5058d2668bf02b 212 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 125 208 1.1E-19 T 22-04-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 PP4_RS00980 eb8d4fe301c032fe5f5058d2668bf02b 212 PANTHER PTHR10516 5 19 5.5E-30 T 22-04-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type PP4_RS00980 eb8d4fe301c032fe5f5058d2668bf02b 212 PANTHER PTHR10516 94 210 5.5E-30 T 22-04-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type PP4_RS01085 6757abc6dfb97656f0cab1f6b9b27c1b 903 Pfam PF10139 Putative bacterial virulence factor 25 894 1.2E-273 T 22-04-2016 IPR017030 Virulence effector, SrfC PP4_RS01085 6757abc6dfb97656f0cab1f6b9b27c1b 903 PIRSF PIRSF034586 1 903 1.3E-269 T 22-04-2016 IPR017030 Virulence effector, SrfC PP4_RS13100 21c639db3177a945e0dd7fb5562b70e2 70 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 43 63 9.6E-11 T 22-04-2016 IPR019626 Stress-induced protein, KGG, repeat PP4_RS13100 21c639db3177a945e0dd7fb5562b70e2 70 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 21 41 2.3E-9 T 22-04-2016 IPR019626 Stress-induced protein, KGG, repeat PP4_RS13100 21c639db3177a945e0dd7fb5562b70e2 70 PANTHER PTHR36569:SF1 20 69 5.3E-20 T 22-04-2016 PP4_RS13100 21c639db3177a945e0dd7fb5562b70e2 70 PANTHER PTHR36569 20 69 5.3E-20 T 22-04-2016 PP4_RS01025 58b0f3ad5df47f6d952389f29f8b059f 80 Pfam PF10982 Protein of unknown function (DUF2789) 1 75 1.3E-30 T 22-04-2016 IPR021250 Protein of unknown function DUF2789 PP4_RS08635 fd67c4411144bd20461d9cf785fef1f2 387 Pfam PF02771 Acyl-CoA dehydrogenase, N-terminal domain 13 123 2.2E-37 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS08635 fd67c4411144bd20461d9cf785fef1f2 387 ProSitePatterns PS00072 Acyl-CoA dehydrogenases signature 1. 129 141 - T 22-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 PP4_RS08635 fd67c4411144bd20461d9cf785fef1f2 387 Gene3D G3DSA:1.10.540.10 4 125 1.6E-43 T 22-04-2016 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal GO:0008152|GO:0016627|GO:0050660|GO:0055114 PP4_RS08635 fd67c4411144bd20461d9cf785fef1f2 387 ProSitePatterns PS00073 Acyl-CoA dehydrogenases signature 2. 341 360 - T 22-04-2016 IPR006089 Acyl-CoA dehydrogenase, conserved site GO:0003995|GO:0055114 PP4_RS08635 fd67c4411144bd20461d9cf785fef1f2 387 Gene3D G3DSA:1.20.140.10 222 386 1.2E-66 T 22-04-2016 PP4_RS08635 fd67c4411144bd20461d9cf785fef1f2 387 Pfam PF00441 Acyl-CoA dehydrogenase, C-terminal domain 234 382 3.9E-42 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS08635 fd67c4411144bd20461d9cf785fef1f2 387 PANTHER PTHR10909 6 387 7.6E-296 T 22-04-2016 PP4_RS08635 fd67c4411144bd20461d9cf785fef1f2 387 Pfam PF02770 Acyl-CoA dehydrogenase, middle domain 127 222 6.4E-28 T 22-04-2016 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain GO:0003995|GO:0055114 PP4_RS08635 fd67c4411144bd20461d9cf785fef1f2 387 Gene3D G3DSA:2.40.110.10 126 221 3.6E-41 T 22-04-2016 PP4_RS08635 fd67c4411144bd20461d9cf785fef1f2 387 SUPERFAMILY SSF56645 5 247 1.31E-88 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 PP4_RS08635 fd67c4411144bd20461d9cf785fef1f2 387 SUPERFAMILY SSF47203 233 385 1.93E-46 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS08635 fd67c4411144bd20461d9cf785fef1f2 387 PANTHER PTHR10909:SF326 6 387 7.6E-296 T 22-04-2016 PP4_RS09835 a34621f1b25f54b28c2f582a71631f68 289 PANTHER PTHR12715:SF9 1 289 1.3E-116 T 22-04-2016 PP4_RS09835 a34621f1b25f54b28c2f582a71631f68 289 PANTHER PTHR12715 1 289 1.3E-116 T 22-04-2016 PP4_RS09835 a34621f1b25f54b28c2f582a71631f68 289 SUPERFAMILY SSF103481 182 282 5.75E-8 T 22-04-2016 PP4_RS09835 a34621f1b25f54b28c2f582a71631f68 289 Pfam PF00892 EamA-like transporter family 6 129 1.2E-11 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS09835 a34621f1b25f54b28c2f582a71631f68 289 Pfam PF00892 EamA-like transporter family 149 281 3.4E-12 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS09835 a34621f1b25f54b28c2f582a71631f68 289 SUPERFAMILY SSF103481 41 131 8.5E-7 T 22-04-2016 PP4_RS11720 c657602c1d6543655e7563117bccaab3 294 SUPERFAMILY SSF103481 39 138 5.23E-8 T 22-04-2016 PP4_RS11720 c657602c1d6543655e7563117bccaab3 294 SUPERFAMILY SSF103481 185 282 1.57E-12 T 22-04-2016 PP4_RS11720 c657602c1d6543655e7563117bccaab3 294 Pfam PF00892 EamA-like transporter family 150 282 1.0E-15 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS11720 c657602c1d6543655e7563117bccaab3 294 Pfam PF00892 EamA-like transporter family 10 136 6.3E-9 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS11720 c657602c1d6543655e7563117bccaab3 294 PANTHER PTHR12715:SF17 4 293 1.2E-26 T 22-04-2016 PP4_RS11720 c657602c1d6543655e7563117bccaab3 294 PANTHER PTHR12715 4 293 1.2E-26 T 22-04-2016 PP4_RS14480 585fe240e9549378e9cee6b29f5e7662 187 PANTHER PTHR41386:SF1 41 165 3.2E-21 T 22-04-2016 PP4_RS14480 585fe240e9549378e9cee6b29f5e7662 187 Pfam PF06210 Protein of unknown function (DUF1003) 50 121 5.0E-25 T 22-04-2016 IPR010406 Protein of unknown function DUF1003 PP4_RS14480 585fe240e9549378e9cee6b29f5e7662 187 PANTHER PTHR41386 41 165 3.2E-21 T 22-04-2016 PP4_RS14200 57d65ee1cc49f032721e39cf03a190d6 228 Pfam PF09490 Probable cobalt transporter subunit (CbtA) 3 222 3.3E-66 T 22-04-2016 IPR012666 Cobalt transporter subunit CbtA, putative PP4_RS14200 57d65ee1cc49f032721e39cf03a190d6 228 TIGRFAM TIGR02458 CbtA: cobalt transporter subunit CbtA (proposed) 1 224 6.7E-83 T 22-04-2016 IPR012666 Cobalt transporter subunit CbtA, putative PP4_RS21905 e505f08607b201a6fb7bb47802d2eae2 269 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS21905 e505f08607b201a6fb7bb47802d2eae2 269 Pfam PF00005 ABC transporter 25 172 8.0E-29 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS21905 e505f08607b201a6fb7bb47802d2eae2 269 PANTHER PTHR24220 10 266 1.7E-171 T 22-04-2016 PP4_RS21905 e505f08607b201a6fb7bb47802d2eae2 269 SMART SM00382 33 222 2.3E-12 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS21905 e505f08607b201a6fb7bb47802d2eae2 269 SUPERFAMILY SSF52540 8 235 4.61E-63 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS21905 e505f08607b201a6fb7bb47802d2eae2 269 Gene3D G3DSA:3.40.50.300 7 246 2.0E-67 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS21905 e505f08607b201a6fb7bb47802d2eae2 269 PANTHER PTHR24220:SF368 10 266 1.7E-171 T 22-04-2016 PP4_RS05215 ab1cf3d5890d9e015dba372c0416b879 72 PANTHER PTHR37424:SF1 2 53 7.3E-16 T 22-04-2016 PP4_RS05215 ab1cf3d5890d9e015dba372c0416b879 72 PANTHER PTHR37424 2 53 7.3E-16 T 22-04-2016 PP4_RS05215 ab1cf3d5890d9e015dba372c0416b879 72 Pfam PF04324 BFD-like [2Fe-2S] binding domain 2 49 5.0E-10 T 22-04-2016 IPR007419 BFD-like [2Fe-2S]-binding domain PP4_RS21170 969caf8790e4bd5c0517cbbc39366aa2 276 Gene3D G3DSA:3.20.20.60 6 234 4.7E-61 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PP4_RS21170 969caf8790e4bd5c0517cbbc39366aa2 276 PANTHER PTHR21631 4 265 4.4E-84 T 22-04-2016 PP4_RS21170 969caf8790e4bd5c0517cbbc39366aa2 276 SUPERFAMILY SSF51621 7 274 1.7E-63 T 22-04-2016 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain GO:0003824 PP4_RS21170 969caf8790e4bd5c0517cbbc39366aa2 276 Pfam PF13714 Phosphoenolpyruvate phosphomutase 11 252 5.0E-70 T 22-04-2016 PP4_RS21170 969caf8790e4bd5c0517cbbc39366aa2 276 PANTHER PTHR21631:SF18 4 265 4.4E-84 T 22-04-2016 PP4_RS00675 81b8d4d21ae5f84fa1adb7366369c655 340 PIRSF PIRSF029727 1 340 1.2E-181 T 22-04-2016 IPR016937 Uncharacterised conserved protein UCP029727 PP4_RS00675 81b8d4d21ae5f84fa1adb7366369c655 340 Pfam PF11141 Protein of unknown function (DUF2914) 269 333 4.8E-25 T 22-04-2016 IPR022606 Protein of unknown function DUF2914 PP4_RS05355 f5d54edb2bd6ddcf50dee1f5b88777b1 237 SUPERFAMILY SSF51161 57 223 4.99E-34 T 22-04-2016 IPR011004 Trimeric LpxA-like PP4_RS05355 f5d54edb2bd6ddcf50dee1f5b88777b1 237 Gene3D G3DSA:2.160.10.10 120 229 1.1E-23 T 22-04-2016 PP4_RS05355 f5d54edb2bd6ddcf50dee1f5b88777b1 237 PANTHER PTHR23416 1 225 4.2E-56 T 22-04-2016 PP4_RS05355 f5d54edb2bd6ddcf50dee1f5b88777b1 237 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 135 169 0.0011 T 22-04-2016 IPR001451 Hexapeptide repeat PP4_RS05355 f5d54edb2bd6ddcf50dee1f5b88777b1 237 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 182 217 5.8E-8 T 22-04-2016 IPR001451 Hexapeptide repeat PP4_RS05355 f5d54edb2bd6ddcf50dee1f5b88777b1 237 PANTHER PTHR23416:SF55 1 225 4.2E-56 T 22-04-2016 PP4_RS05355 f5d54edb2bd6ddcf50dee1f5b88777b1 237 Gene3D G3DSA:1.10.3130.10 53 119 6.3E-10 T 22-04-2016 PP4_RS20660 256587b73741d731ef0c2c5ef96fb917 203 PIRSF PIRSF015617 6 203 9.5E-71 T 22-04-2016 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 PP4_RS20660 256587b73741d731ef0c2c5ef96fb917 203 SUPERFAMILY SSF52540 13 202 6.64E-69 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS20660 256587b73741d731ef0c2c5ef96fb917 203 Gene3D G3DSA:3.40.50.300 8 202 3.2E-71 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS20660 256587b73741d731ef0c2c5ef96fb917 203 TIGRFAM TIGR00708 cobA: cob(I)yrinic acid a,c-diamide adenosyltransferase 31 202 4.5E-64 T 22-04-2016 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 PP4_RS20660 256587b73741d731ef0c2c5ef96fb917 203 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 34 202 2.3E-57 T 22-04-2016 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 PP4_RS20660 256587b73741d731ef0c2c5ef96fb917 203 PANTHER PTHR30069 7 203 5.2E-61 T 22-04-2016 PP4_RS20660 256587b73741d731ef0c2c5ef96fb917 203 Pfam PF12557 Cob(I)alamin adenosyltransferase N terminal 1 26 1.8E-10 T 22-04-2016 IPR025826 Cob(I)alamin adenosyltransferase N-terminal domain KEGG: 00860+2.5.1.17|MetaCyc: PWY-5508|MetaCyc: PWY-5509|MetaCyc: PWY-6268|MetaCyc: PWY-6269|UniPathway: UPA00148 PP4_RS07045 c64484f69fe430cb325f75730282521d 261 PANTHER PTHR30435:SF19 1 261 1.2E-131 T 22-04-2016 PP4_RS07045 c64484f69fe430cb325f75730282521d 261 SUPERFAMILY SSF117143 92 222 6.15E-35 T 22-04-2016 PP4_RS07045 c64484f69fe430cb325f75730282521d 261 Pfam PF06429 Flagellar basal body rod FlgEFG protein C-terminal 182 257 4.6E-25 T 22-04-2016 IPR010930 Flagellar basal-body/hook protein, C-terminal domain PP4_RS07045 c64484f69fe430cb325f75730282521d 261 PANTHER PTHR30435 1 261 1.2E-131 T 22-04-2016 PP4_RS07045 c64484f69fe430cb325f75730282521d 261 TIGRFAM TIGR02488 flgG_G_neg: flagellar basal-body rod protein FlgG 4 260 2.6E-117 T 22-04-2016 IPR012834 Flagellar basal-body rod FlgG GO:0009426|GO:0071973 PP4_RS07045 c64484f69fe430cb325f75730282521d 261 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 4 136 4.5E-49 T 22-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G PP4_RS07045 c64484f69fe430cb325f75730282521d 261 TIGRFAM TIGR03506 FlgEFG_subfam: flagellar hook-basal body protein 148 243 9.9E-31 T 22-04-2016 IPR020013 Fagellar hook-basal body protein, FlgE/F/G PP4_RS07045 c64484f69fe430cb325f75730282521d 261 Pfam PF00460 Flagella basal body rod protein 5 35 8.4E-13 T 22-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 PP4_RS07045 c64484f69fe430cb325f75730282521d 261 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 11 31 - T 22-04-2016 IPR019776 Flagellar basal body rod protein, conserved site PP4_RS16155 2fefc7f34feb77bcd4f943f8c92e0cf3 119 PANTHER PTHR40943 23 119 3.4E-17 T 22-04-2016 PP4_RS16155 2fefc7f34feb77bcd4f943f8c92e0cf3 119 Gene3D G3DSA:2.60.120.10 22 115 8.6E-27 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS16155 2fefc7f34feb77bcd4f943f8c92e0cf3 119 Pfam PF05899 Protein of unknown function (DUF861) 46 112 1.7E-16 T 22-04-2016 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 PP4_RS16155 2fefc7f34feb77bcd4f943f8c92e0cf3 119 SUPERFAMILY SSF51182 25 114 1.29E-13 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS00960 dfd74da0651709f673e28f4626e0ca29 366 Pfam PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase 27 356 8.5E-82 T 22-04-2016 IPR007470 Putative uroporphyrinogen-III C-methyltransferase HemX PP4_RS00960 dfd74da0651709f673e28f4626e0ca29 366 PANTHER PTHR38043 33 362 3.6E-47 T 22-04-2016 PP4_RS12725 c65ee5fa19fe4c74df4a85392b92aea5 252 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 63 229 5.5E-22 T 22-04-2016 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00566 PP4_RS12725 c65ee5fa19fe4c74df4a85392b92aea5 252 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 66 227 5.0E-41 T 22-04-2016 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|UniPathway: UPA00566 PP4_RS12725 c65ee5fa19fe4c74df4a85392b92aea5 252 PANTHER PTHR34136 25 240 1.2E-34 T 22-04-2016 PP4_RS01420 1772a202d515498f5804de0fb5d0c692 276 Gene3D G3DSA:3.10.20.10 41 126 5.5E-25 T 22-04-2016 PP4_RS01420 1772a202d515498f5804de0fb5d0c692 276 PIRSF PIRSF015626 11 275 1.5E-66 T 22-04-2016 IPR003786 Protein FdhD GO:0016783 PP4_RS01420 1772a202d515498f5804de0fb5d0c692 276 PANTHER PTHR30592:SF1 6 273 1.7E-97 T 22-04-2016 PP4_RS01420 1772a202d515498f5804de0fb5d0c692 276 Pfam PF02634 FdhD/NarQ family 39 272 2.1E-63 T 22-04-2016 IPR003786 Protein FdhD GO:0016783 PP4_RS01420 1772a202d515498f5804de0fb5d0c692 276 PANTHER PTHR30592 6 273 1.7E-97 T 22-04-2016 PP4_RS01420 1772a202d515498f5804de0fb5d0c692 276 SUPERFAMILY SSF53927 35 272 1.68E-67 T 22-04-2016 IPR016193 Cytidine deaminase-like GO:0003824 PP4_RS01420 1772a202d515498f5804de0fb5d0c692 276 Gene3D G3DSA:3.40.140.10 146 272 1.5E-41 T 22-04-2016 PP4_RS01420 1772a202d515498f5804de0fb5d0c692 276 TIGRFAM TIGR00129 fdhD_narQ: formate dehydrogenase family accessory protein FdhD 38 271 2.1E-49 T 22-04-2016 IPR003786 Protein FdhD GO:0016783 PP4_RS16405 861df606c67717086c7bc4b6d63cfcc2 272 SUPERFAMILY SSF161098 70 261 3.14E-37 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS16405 861df606c67717086c7bc4b6d63cfcc2 272 TIGRFAM TIGR01097 PhnE: phosphonate ABC transporter, permease protein PhnE 24 266 5.9E-95 T 22-04-2016 IPR005769 ABC transporter, permease PhnE/PtxC GO:0005887|GO:0015604|GO:0015716 PP4_RS16405 861df606c67717086c7bc4b6d63cfcc2 272 Gene3D G3DSA:1.10.3720.10 70 265 7.5E-31 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS16405 861df606c67717086c7bc4b6d63cfcc2 272 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 94 266 8.0E-22 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS16405 861df606c67717086c7bc4b6d63cfcc2 272 PANTHER PTHR30043:SF1 25 272 6.0E-97 T 22-04-2016 PP4_RS16405 861df606c67717086c7bc4b6d63cfcc2 272 PANTHER PTHR30043 25 272 6.0E-97 T 22-04-2016 PP4_RS17360 dda84b68cd35d1cbdb207d5a1fcf4700 322 SMART SM00972 253 319 7.8E-9 T 22-04-2016 IPR007893 Spore coat protein U PP4_RS17360 dda84b68cd35d1cbdb207d5a1fcf4700 322 SMART SM00972 91 156 1.4E-13 T 22-04-2016 IPR007893 Spore coat protein U PP4_RS17360 dda84b68cd35d1cbdb207d5a1fcf4700 322 Pfam PF05229 Spore Coat Protein U domain 181 317 1.1E-28 T 22-04-2016 IPR007893 Spore coat protein U PP4_RS17360 dda84b68cd35d1cbdb207d5a1fcf4700 322 Pfam PF05229 Spore Coat Protein U domain 21 155 1.0E-17 T 22-04-2016 IPR007893 Spore coat protein U PP4_RS17360 dda84b68cd35d1cbdb207d5a1fcf4700 322 PANTHER PTHR37089:SF1 34 320 1.9E-45 T 22-04-2016 PP4_RS17360 dda84b68cd35d1cbdb207d5a1fcf4700 322 PANTHER PTHR37089 34 320 1.9E-45 T 22-04-2016 PP4_RS03860 8c53bab43d7ceda45d37f5256f88bca4 293 PANTHER PTHR35007:SF1 84 291 3.0E-51 T 22-04-2016 PP4_RS03860 8c53bab43d7ceda45d37f5256f88bca4 293 Pfam PF00482 Type II secretion system (T2SS), protein F 128 252 1.1E-14 T 22-04-2016 IPR018076 Type II secretion system F domain PP4_RS03860 8c53bab43d7ceda45d37f5256f88bca4 293 PANTHER PTHR35007 84 291 3.0E-51 T 22-04-2016 PP4_RS12000 a5f5ab2acccc0946dd4a69f968ded56f 140 TIGRFAM TIGR00807 malonate_madL: malonate transporter, MadL subunit 1 125 1.0E-62 T 22-04-2016 IPR004690 Malonate transporter MadL subunit GO:0016020 PP4_RS12000 a5f5ab2acccc0946dd4a69f968ded56f 140 Pfam PF03817 Malonate transporter MadL subunit 1 116 3.2E-48 T 22-04-2016 IPR004690 Malonate transporter MadL subunit GO:0016020 PP4_RS02360 a5c3b422568e449a004b35f2d5d07309 363 Hamap MF_01270 Anhydro-N-acetylmuramic acid kinase [anmK]. 2 363 40.235 T 22-04-2016 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 KEGG: 00040+2.7.1.17|UniPathway: UPA00343|UniPathway: UPA00544 PP4_RS02360 a5c3b422568e449a004b35f2d5d07309 363 SUPERFAMILY SSF53067 63 108 1.08E-25 T 22-04-2016 PP4_RS02360 a5c3b422568e449a004b35f2d5d07309 363 SUPERFAMILY SSF53067 138 336 1.08E-25 T 22-04-2016 PP4_RS02360 a5c3b422568e449a004b35f2d5d07309 363 SUPERFAMILY SSF53067 3 36 1.08E-25 T 22-04-2016 PP4_RS02360 a5c3b422568e449a004b35f2d5d07309 363 PANTHER PTHR30605:SF0 1 362 5.2E-151 T 22-04-2016 PP4_RS02360 a5c3b422568e449a004b35f2d5d07309 363 Pfam PF03702 Uncharacterised protein family (UPF0075) 3 363 1.3E-153 T 22-04-2016 IPR005338 Anhydro-N-acetylmuramic acid kinase GO:0005524|GO:0006040|GO:0009254|GO:0016773 KEGG: 00040+2.7.1.17|UniPathway: UPA00343|UniPathway: UPA00544 PP4_RS02360 a5c3b422568e449a004b35f2d5d07309 363 PANTHER PTHR30605 1 362 5.2E-151 T 22-04-2016 PP4_RS02360 a5c3b422568e449a004b35f2d5d07309 363 Gene3D G3DSA:3.30.420.40 2 191 5.5E-70 T 22-04-2016 PP4_RS04635 f9dda1f295df24804a96ceda81a3be34 128 SUPERFAMILY SSF48452 59 104 5.18E-5 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS04635 f9dda1f295df24804a96ceda81a3be34 128 Gene3D G3DSA:1.25.40.10 22 103 8.4E-5 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS19760 ad03f48209726d92b7ca73c8dd2c9336 249 PANTHER PTHR30269 1 245 1.8E-55 T 22-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 PP4_RS19760 ad03f48209726d92b7ca73c8dd2c9336 249 PANTHER PTHR30269:SF9 1 245 1.8E-55 T 22-04-2016 PP4_RS19760 ad03f48209726d92b7ca73c8dd2c9336 249 Pfam PF01925 Sulfite exporter TauE/SafE 8 244 4.7E-44 T 22-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 PP4_RS07115 81d53343ef781c19efbd5fc4b1642bc2 355 TIGRFAM TIGR02622 CDP_4_6_dhtase: CDP-glucose 4,6-dehydratase 7 348 1.3E-143 T 22-04-2016 IPR013445 CDP-glucose 4,6-dehydratase KEGG: 00520+4.2.1.45|MetaCyc: PWY-5833|UniPathway: UPA00055|UniPathway: UPA00281 PP4_RS07115 81d53343ef781c19efbd5fc4b1642bc2 355 Pfam PF16363 GDP-mannose 4,6 dehydratase 14 324 1.3E-33 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS07115 81d53343ef781c19efbd5fc4b1642bc2 355 SUPERFAMILY SSF51735 10 333 1.89E-62 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS07115 81d53343ef781c19efbd5fc4b1642bc2 355 PANTHER PTHR10366 12 351 1.1E-131 T 22-04-2016 PP4_RS07115 81d53343ef781c19efbd5fc4b1642bc2 355 Gene3D G3DSA:3.90.25.10 193 348 3.7E-43 T 22-04-2016 PP4_RS07115 81d53343ef781c19efbd5fc4b1642bc2 355 Gene3D G3DSA:3.40.50.720 7 192 2.4E-36 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS07115 81d53343ef781c19efbd5fc4b1642bc2 355 PANTHER PTHR10366:SF33 12 351 1.1E-131 T 22-04-2016 PP4_RS19285 20771fc583f12b85eafeb9941dcd5f57 185 PANTHER PTHR36926:SF1 2 163 6.8E-66 T 22-04-2016 PP4_RS19285 20771fc583f12b85eafeb9941dcd5f57 185 Pfam PF02674 Colicin V production protein 6 143 4.4E-34 T 22-04-2016 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 PP4_RS19285 20771fc583f12b85eafeb9941dcd5f57 185 PANTHER PTHR36926 2 163 6.8E-66 T 22-04-2016 PP4_RS14735 229f9becb68cf48ed1592dd137d8aec6 215 ProDom PD104924 XAC1607 AF0417 14 183 5.0E-92 T 22-04-2016 PP4_RS14735 229f9becb68cf48ed1592dd137d8aec6 215 Pfam PF11655 Protein of unknown function (DUF2589) 16 178 1.8E-37 T 22-04-2016 IPR024510 Protein of unknown function DUF2589 PP4_RS11245 ba5ac151a4d0fb555a806fa351339398 430 PANTHER PTHR19328:SF26 124 427 2.9E-163 T 22-04-2016 PP4_RS11245 ba5ac151a4d0fb555a806fa351339398 430 PANTHER PTHR19328:SF26 42 95 2.9E-163 T 22-04-2016 PP4_RS11245 ba5ac151a4d0fb555a806fa351339398 430 PANTHER PTHR19328 124 427 2.9E-163 T 22-04-2016 PP4_RS11245 ba5ac151a4d0fb555a806fa351339398 430 PANTHER PTHR19328 42 95 2.9E-163 T 22-04-2016 PP4_RS11245 ba5ac151a4d0fb555a806fa351339398 430 Gene3D G3DSA:2.120.10.30 59 429 3.8E-65 T 22-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like PP4_RS11245 ba5ac151a4d0fb555a806fa351339398 430 Gene3D G3DSA:2.120.10.30 13 20 3.8E-65 T 22-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like PP4_RS11245 ba5ac151a4d0fb555a806fa351339398 430 SUPERFAMILY SSF50952 60 106 2.88E-41 T 22-04-2016 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 PP4_RS11245 ba5ac151a4d0fb555a806fa351339398 430 SUPERFAMILY SSF50952 138 428 2.88E-41 T 22-04-2016 IPR011041 Soluble quinoprotein glucose/sorbosone dehydrogenase GO:0003824 PP4_RS11245 ba5ac151a4d0fb555a806fa351339398 430 Pfam PF07995 Glucose / Sorbosone dehydrogenase 75 354 2.5E-12 T 22-04-2016 IPR012938 Glucose/Sorbosone dehydrogenase GO:0005975|GO:0016901|GO:0048038 PP4_RS15020 3e428dd598635f21a4a024092e12172f 405 PANTHER PTHR11820:SF82 187 383 7.6E-74 T 22-04-2016 PP4_RS15020 3e428dd598635f21a4a024092e12172f 405 SUPERFAMILY SSF56529 165 374 9.68E-27 T 22-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 PP4_RS15020 3e428dd598635f21a4a024092e12172f 405 Gene3D G3DSA:3.90.850.10 184 372 2.0E-24 T 22-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 PP4_RS15020 3e428dd598635f21a4a024092e12172f 405 PANTHER PTHR11820 187 383 7.6E-74 T 22-04-2016 PP4_RS15020 3e428dd598635f21a4a024092e12172f 405 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 227 370 1.4E-8 T 22-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 PP4_RS25445 7617c291dbc010ed7b2b2b67079e205c 183 PANTHER PTHR30529:SF5 2 183 5.8E-84 T 22-04-2016 PP4_RS25445 7617c291dbc010ed7b2b2b67079e205c 183 Pfam PF01292 Prokaryotic cytochrome b561 9 180 9.5E-32 T 22-04-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 PP4_RS25445 7617c291dbc010ed7b2b2b67079e205c 183 SUPERFAMILY SSF81342 5 182 1.73E-40 T 22-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 PP4_RS25445 7617c291dbc010ed7b2b2b67079e205c 183 PANTHER PTHR30529 2 183 5.8E-84 T 22-04-2016 PP4_RS16300 8a9ef6e437efcd6b159b2bf5c8a15b52 106 Pfam PF07978 NIPSNAP 3 104 5.8E-36 T 22-04-2016 IPR012577 NIPSNAP PP4_RS16300 8a9ef6e437efcd6b159b2bf5c8a15b52 106 Gene3D G3DSA:3.30.70.900 2 106 3.5E-33 T 22-04-2016 PP4_RS16300 8a9ef6e437efcd6b159b2bf5c8a15b52 106 PANTHER PTHR21017 3 106 4.1E-23 T 22-04-2016 PP4_RS16300 8a9ef6e437efcd6b159b2bf5c8a15b52 106 SUPERFAMILY SSF54909 1 106 1.98E-34 T 22-04-2016 IPR011008 Dimeric alpha-beta barrel PP4_RS01385 46b1489ecfad6da74f7d4ed1889e9bda 299 Gene3D G3DSA:1.10.287.480 183 228 7.0E-12 T 22-04-2016 IPR023212 Heat shock protein Hsp33, helix hairpin bin domain PP4_RS01385 46b1489ecfad6da74f7d4ed1889e9bda 299 Gene3D G3DSA:3.90.1280.10 229 287 1.1E-23 T 22-04-2016 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 PP4_RS01385 46b1489ecfad6da74f7d4ed1889e9bda 299 PIRSF PIRSF005261 4 288 3.9E-70 T 22-04-2016 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 PP4_RS01385 46b1489ecfad6da74f7d4ed1889e9bda 299 SUPERFAMILY SSF118352 228 287 9.55E-18 T 22-04-2016 IPR016154 Heat shock protein Hsp33, C-terminal GO:0005737|GO:0006457|GO:0051082 PP4_RS01385 46b1489ecfad6da74f7d4ed1889e9bda 299 PANTHER PTHR30111:SF1 1 293 4.4E-64 T 22-04-2016 PP4_RS01385 46b1489ecfad6da74f7d4ed1889e9bda 299 PANTHER PTHR30111 1 293 4.4E-64 T 22-04-2016 PP4_RS01385 46b1489ecfad6da74f7d4ed1889e9bda 299 SUPERFAMILY SSF64397 8 236 6.93E-67 T 22-04-2016 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 PP4_RS01385 46b1489ecfad6da74f7d4ed1889e9bda 299 Hamap MF_00117 33 kDa chaperonin [hslO]. 7 289 29.5 T 22-04-2016 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 PP4_RS01385 46b1489ecfad6da74f7d4ed1889e9bda 299 Gene3D G3DSA:3.55.30.10 6 176 3.6E-59 T 22-04-2016 IPR016153 Heat shock protein Hsp33, N-terminal GO:0005737|GO:0006457|GO:0051082 PP4_RS01385 46b1489ecfad6da74f7d4ed1889e9bda 299 Pfam PF01430 Hsp33 protein 8 278 6.5E-78 T 22-04-2016 IPR000397 Heat shock protein Hsp33 GO:0005737|GO:0006457|GO:0051082 PP4_RS20145 b854f8f6ac3a8eaa57335573e2086dc7 354 Pfam PF01757 Acyltransferase family 19 324 4.2E-13 T 22-04-2016 IPR002656 Acyltransferase 3 GO:0016747 PP4_RS20685 cbcf4b12440fdb908dfc52dc4a3d5dfe 235 Pfam PF00308 Bacterial dnaA protein 16 213 7.6E-19 T 22-04-2016 IPR013317 Chromosomal replication initiator protein DnaA PP4_RS20685 cbcf4b12440fdb908dfc52dc4a3d5dfe 235 Gene3D G3DSA:1.10.8.60 169 235 2.9E-29 T 22-04-2016 PP4_RS20685 cbcf4b12440fdb908dfc52dc4a3d5dfe 235 TIGRFAM TIGR03420 DnaA_homol_Hda: DnaA regulatory inactivator Hda 6 233 3.1E-86 T 22-04-2016 IPR017788 DnaA regulatory inactivator Hda GO:0032297 PP4_RS20685 cbcf4b12440fdb908dfc52dc4a3d5dfe 235 SUPERFAMILY SSF52540 44 214 1.68E-26 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS20685 cbcf4b12440fdb908dfc52dc4a3d5dfe 235 PANTHER PTHR30050:SF5 4 233 3.0E-104 T 22-04-2016 PP4_RS20685 cbcf4b12440fdb908dfc52dc4a3d5dfe 235 Gene3D G3DSA:3.40.50.300 4 164 5.6E-42 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS20685 cbcf4b12440fdb908dfc52dc4a3d5dfe 235 PANTHER PTHR30050 4 233 3.0E-104 T 22-04-2016 PP4_RS05110 0a73060b0b8fce2eadaa2f0a417e9d87 137 Pfam PF00293 NUDIX domain 7 117 3.8E-14 T 22-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 PP4_RS05110 0a73060b0b8fce2eadaa2f0a417e9d87 137 PANTHER PTHR22769 3 125 3.4E-38 T 22-04-2016 PP4_RS05110 0a73060b0b8fce2eadaa2f0a417e9d87 137 SUPERFAMILY SSF55811 2 128 2.03E-26 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PP4_RS05110 0a73060b0b8fce2eadaa2f0a417e9d87 137 PANTHER PTHR22769:SF5 3 125 3.4E-38 T 22-04-2016 PP4_RS05110 0a73060b0b8fce2eadaa2f0a417e9d87 137 ProSitePatterns PS00893 Nudix box signature. 35 56 - T 22-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 PP4_RS05110 0a73060b0b8fce2eadaa2f0a417e9d87 137 Gene3D G3DSA:3.90.79.10 2 125 4.9E-24 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PP4_RS05110 0a73060b0b8fce2eadaa2f0a417e9d87 137 PRINTS PR00502 NUDIX hydrolase family signature 44 59 1.4E-5 T 22-04-2016 IPR020476 NUDIX hydrolase PP4_RS05110 0a73060b0b8fce2eadaa2f0a417e9d87 137 PRINTS PR00502 NUDIX hydrolase family signature 30 44 1.4E-5 T 22-04-2016 IPR020476 NUDIX hydrolase PP4_RS06265 93c4335ec80ce461b6298a8fb55a33b7 173 PIRSF PIRSF029393 1 171 2.2E-79 T 22-04-2016 IPR016917 Uncharacterised conserved protein UCP029393 PP4_RS06265 93c4335ec80ce461b6298a8fb55a33b7 173 Pfam PF11157 Protein of unknown function (DUF2937) 2 160 1.6E-59 T 22-04-2016 IPR022584 Protein of unknown function DUF2937 PP4_RS09050 4960b1d4bd8676f300926dc4884edf1f 268 PANTHER PTHR10992 13 265 1.2E-31 T 22-04-2016 PP4_RS09050 4960b1d4bd8676f300926dc4884edf1f 268 Pfam PF00561 alpha/beta hydrolase fold 28 251 5.4E-18 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS09050 4960b1d4bd8676f300926dc4884edf1f 268 Gene3D G3DSA:3.40.50.1820 12 264 1.0E-43 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS09050 4960b1d4bd8676f300926dc4884edf1f 268 PANTHER PTHR10992:SF771 13 265 1.2E-31 T 22-04-2016 PP4_RS09050 4960b1d4bd8676f300926dc4884edf1f 268 SUPERFAMILY SSF53474 10 264 2.47E-44 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS04230 50968e6bbe407c7952966fa3c535da1f 259 Pfam PF02167 Cytochrome C1 family 86 258 3.7E-10 T 22-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 PP4_RS04230 50968e6bbe407c7952966fa3c535da1f 259 PANTHER PTHR10266:SF3 202 259 2.7E-67 T 22-04-2016 PP4_RS04230 50968e6bbe407c7952966fa3c535da1f 259 PANTHER PTHR10266:SF3 5 162 2.7E-67 T 22-04-2016 PP4_RS04230 50968e6bbe407c7952966fa3c535da1f 259 Gene3D G3DSA:1.20.5.100 230 259 9.4E-8 T 22-04-2016 PP4_RS04230 50968e6bbe407c7952966fa3c535da1f 259 PANTHER PTHR10266 202 259 2.7E-67 T 22-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 PP4_RS04230 50968e6bbe407c7952966fa3c535da1f 259 PANTHER PTHR10266 5 162 2.7E-67 T 22-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 PP4_RS04230 50968e6bbe407c7952966fa3c535da1f 259 PRINTS PR00603 Cytochrome C1 signature 105 129 7.3E-7 T 22-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 PP4_RS04230 50968e6bbe407c7952966fa3c535da1f 259 PRINTS PR00603 Cytochrome C1 signature 43 62 7.3E-7 T 22-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 PP4_RS04230 50968e6bbe407c7952966fa3c535da1f 259 PRINTS PR00603 Cytochrome C1 signature 224 239 7.3E-7 T 22-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 PP4_RS04230 50968e6bbe407c7952966fa3c535da1f 259 PRINTS PR00603 Cytochrome C1 signature 205 224 7.3E-7 T 22-04-2016 IPR002326 Cytochrome c1 GO:0009055|GO:0020037 PP4_RS04230 50968e6bbe407c7952966fa3c535da1f 259 Gene3D G3DSA:1.10.760.10 18 224 1.0E-58 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS04230 50968e6bbe407c7952966fa3c535da1f 259 SUPERFAMILY SSF46626 18 160 4.39E-45 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS04230 50968e6bbe407c7952966fa3c535da1f 259 SUPERFAMILY SSF46626 200 222 4.39E-45 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS20440 78f08bcd64fe4ac4776d71b50922f94e 322 Pfam PF00563 EAL domain 9 239 4.9E-56 T 22-04-2016 IPR001633 EAL domain PP4_RS20440 78f08bcd64fe4ac4776d71b50922f94e 322 PANTHER PTHR33121 10 248 1.6E-53 T 22-04-2016 PP4_RS20440 78f08bcd64fe4ac4776d71b50922f94e 322 PANTHER PTHR33121:SF10 10 248 1.6E-53 T 22-04-2016 PP4_RS20440 78f08bcd64fe4ac4776d71b50922f94e 322 Gene3D G3DSA:3.20.20.450 8 242 1.2E-62 T 22-04-2016 IPR001633 EAL domain PP4_RS20440 78f08bcd64fe4ac4776d71b50922f94e 322 SMART SM00052 2 244 3.1E-40 T 22-04-2016 IPR001633 EAL domain PP4_RS20440 78f08bcd64fe4ac4776d71b50922f94e 322 SUPERFAMILY SSF141868 8 249 3.53E-67 T 22-04-2016 IPR001633 EAL domain PP4_RS25660 ca02583f07ef5e2463f6efe2c75b98c6 265 SMART SM00062 34 258 2.4E-56 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS25660 ca02583f07ef5e2463f6efe2c75b98c6 265 Gene3D G3DSA:3.40.190.10 112 217 2.0E-15 T 22-04-2016 PP4_RS25660 ca02583f07ef5e2463f6efe2c75b98c6 265 PANTHER PTHR18966:SF152 12 260 3.8E-81 T 22-04-2016 PP4_RS25660 ca02583f07ef5e2463f6efe2c75b98c6 265 PANTHER PTHR18966 12 260 3.8E-81 T 22-04-2016 PP4_RS25660 ca02583f07ef5e2463f6efe2c75b98c6 265 SMART SM00079 34 257 2.6E-4 T 22-04-2016 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 PP4_RS25660 ca02583f07ef5e2463f6efe2c75b98c6 265 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 57 70 - T 22-04-2016 IPR018313 Solute-binding protein family 3, conserved site GO:0005215|GO:0006810 PP4_RS25660 ca02583f07ef5e2463f6efe2c75b98c6 265 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 35 256 2.7E-55 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS25660 ca02583f07ef5e2463f6efe2c75b98c6 265 SUPERFAMILY SSF53850 8 257 2.23E-63 T 22-04-2016 PP4_RS25660 ca02583f07ef5e2463f6efe2c75b98c6 265 Gene3D G3DSA:3.40.190.10 218 257 1.6E-38 T 22-04-2016 PP4_RS25660 ca02583f07ef5e2463f6efe2c75b98c6 265 Gene3D G3DSA:3.40.190.10 31 111 1.6E-38 T 22-04-2016 PP4_RS23290 0c9825f377520f178ef66710638e6b67 66 Pfam PF03884 Domain of unknown function (DUF329) 7 56 1.3E-25 T 22-04-2016 IPR005584 DNA gyrase inhibitor YacG GO:0008270 PP4_RS23290 0c9825f377520f178ef66710638e6b67 66 PANTHER PTHR36150 2 55 2.9E-23 T 22-04-2016 PP4_RS23290 0c9825f377520f178ef66710638e6b67 66 Gene3D G3DSA:3.30.50.10 2 57 1.5E-25 T 22-04-2016 IPR013088 Zinc finger, NHR/GATA-type GO:0006355|GO:0008270 PP4_RS23290 0c9825f377520f178ef66710638e6b67 66 PANTHER PTHR36150:SF1 2 55 2.9E-23 T 22-04-2016 PP4_RS23290 0c9825f377520f178ef66710638e6b67 66 Hamap MF_00649 DNA gyrase inhibitor YacG [yacG]. 3 58 19.85 T 22-04-2016 IPR005584 DNA gyrase inhibitor YacG GO:0008270 PP4_RS23290 0c9825f377520f178ef66710638e6b67 66 SUPERFAMILY SSF57716 2 60 3.42E-21 T 22-04-2016 PP4_RS19070 c8fbcb3634b946323042eb6552e868f1 438 Gene3D G3DSA:1.10.3860.10 3 401 1.7E-110 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS19070 c8fbcb3634b946323042eb6552e868f1 438 SUPERFAMILY SSF118215 7 398 5.62E-113 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS19070 c8fbcb3634b946323042eb6552e868f1 438 PANTHER PTHR11958 3 433 6.5E-202 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS19070 c8fbcb3634b946323042eb6552e868f1 438 PRINTS PR00173 Glutamate-aspartate symporter signature 5 25 4.9E-24 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS19070 c8fbcb3634b946323042eb6552e868f1 438 PRINTS PR00173 Glutamate-aspartate symporter signature 290 316 4.9E-24 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS19070 c8fbcb3634b946323042eb6552e868f1 438 PRINTS PR00173 Glutamate-aspartate symporter signature 325 344 4.9E-24 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS19070 c8fbcb3634b946323042eb6552e868f1 438 PRINTS PR00173 Glutamate-aspartate symporter signature 143 165 4.9E-24 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS19070 c8fbcb3634b946323042eb6552e868f1 438 PRINTS PR00173 Glutamate-aspartate symporter signature 72 97 4.9E-24 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS19070 c8fbcb3634b946323042eb6552e868f1 438 PRINTS PR00173 Glutamate-aspartate symporter signature 190 209 4.9E-24 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS19070 c8fbcb3634b946323042eb6552e868f1 438 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 34 49 - T 22-04-2016 IPR018107 Sodium:dicarboxylate symporter, conserved site Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS19070 c8fbcb3634b946323042eb6552e868f1 438 Pfam PF00375 Sodium:dicarboxylate symporter family 7 397 3.6E-105 T 22-04-2016 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS19070 c8fbcb3634b946323042eb6552e868f1 438 PANTHER PTHR11958:SF49 3 433 6.5E-202 T 22-04-2016 PP4_RS19070 c8fbcb3634b946323042eb6552e868f1 438 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2. 293 316 - T 22-04-2016 IPR018107 Sodium:dicarboxylate symporter, conserved site Reactome: REACT_15518|Reactome: REACT_19419 PP4_RS07340 62fd6c0a0367840c45875f119ace6b49 131 Pfam PF10975 Protein of unknown function (DUF2802) 62 129 5.9E-24 T 22-04-2016 IPR021244 Protein of unknown function DUF2802 PP4_RS04560 413556dbd7281d7b0351f00182ec4357 193 Pfam PF04336 Protein of unknown function, DUF479 81 184 1.7E-29 T 22-04-2016 IPR007431 Acyl carrier protein phosphodiesterase GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 PP4_RS04560 413556dbd7281d7b0351f00182ec4357 193 PANTHER PTHR38764 2 192 1.3E-63 T 22-04-2016 PP4_RS04560 413556dbd7281d7b0351f00182ec4357 193 PIRSF PIRSF011489 1 191 8.2E-75 T 22-04-2016 IPR007431 Acyl carrier protein phosphodiesterase GO:0006633|GO:0008770 KEGG: 00770+3.1.4.14|MetaCyc: PWY-6012 PP4_RS04560 413556dbd7281d7b0351f00182ec4357 193 PANTHER PTHR38764:SF1 2 192 1.3E-63 T 22-04-2016 PP4_RS19145 48954a5ea622fe64ee6a38c0a12d8d53 544 PANTHER PTHR40940 1 542 7.4E-81 T 22-04-2016 PP4_RS19145 48954a5ea622fe64ee6a38c0a12d8d53 544 Pfam PF13584 Oxygen tolerance 13 461 1.9E-105 T 22-04-2016 IPR025738 Aerotolerance-related protein BatD PP4_RS19145 48954a5ea622fe64ee6a38c0a12d8d53 544 PANTHER PTHR40940:SF1 1 542 7.4E-81 T 22-04-2016 PP4_RS10610 5369e2f0f71ad19bb5e7ed24544a3d33 351 Gene3D G3DSA:2.40.370.10 45 227 1.2E-70 T 22-04-2016 IPR023374 AttH-like domain PP4_RS10610 5369e2f0f71ad19bb5e7ed24544a3d33 351 SUPERFAMILY SSF159245 34 351 4.05E-105 T 22-04-2016 PP4_RS10610 5369e2f0f71ad19bb5e7ed24544a3d33 351 Gene3D G3DSA:2.40.370.10 231 351 2.3E-43 T 22-04-2016 IPR023374 AttH-like domain PP4_RS10610 5369e2f0f71ad19bb5e7ed24544a3d33 351 PANTHER PTHR38591 23 351 1.6E-95 T 22-04-2016 PP4_RS10610 5369e2f0f71ad19bb5e7ed24544a3d33 351 Pfam PF17186 Lipocalin-like domain 228 351 6.0E-43 T 22-04-2016 IPR033451 AttH, lipocalin-like domain PP4_RS10610 5369e2f0f71ad19bb5e7ed24544a3d33 351 Pfam PF07143 CrtC N-terminal lipocalin domain 57 225 4.2E-56 T 22-04-2016 IPR010791 AttH domain PP4_RS27105 f1b2e52908eea369c76f6c33331ec4bc 229 Pfam PF00072 Response regulator receiver domain 6 117 1.2E-30 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS27105 f1b2e52908eea369c76f6c33331ec4bc 229 PANTHER PTHR26402 4 225 3.7E-144 T 22-04-2016 PP4_RS27105 f1b2e52908eea369c76f6c33331ec4bc 229 Gene3D G3DSA:1.10.10.10 128 227 3.9E-33 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS27105 f1b2e52908eea369c76f6c33331ec4bc 229 SMART SM00862 151 225 1.6E-24 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS27105 f1b2e52908eea369c76f6c33331ec4bc 229 SMART SM00448 4 117 1.1E-45 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS27105 f1b2e52908eea369c76f6c33331ec4bc 229 TIGRFAM TIGR02154 PhoB: phosphate regulon transcriptional regulatory protein PhoB 3 226 6.1E-110 T 22-04-2016 IPR011879 Signal transduction response regulator, phosphate regulon transcriptional regulatory protein PhoB GO:0000156|GO:0000160|GO:0003677|GO:0006817 PP4_RS27105 f1b2e52908eea369c76f6c33331ec4bc 229 PANTHER PTHR26402:SF576 4 225 3.7E-144 T 22-04-2016 PP4_RS27105 f1b2e52908eea369c76f6c33331ec4bc 229 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 225 1.2E-24 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS27105 f1b2e52908eea369c76f6c33331ec4bc 229 Gene3D G3DSA:3.40.50.2300 4 125 1.1E-42 T 22-04-2016 PP4_RS27105 f1b2e52908eea369c76f6c33331ec4bc 229 SUPERFAMILY SSF52172 3 183 3.7E-44 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS23630 b44a1080d4eb3bcb70a5bc0a82694f78 100 SUPERFAMILY SSF54909 5 86 5.78E-23 T 22-04-2016 IPR011008 Dimeric alpha-beta barrel PP4_RS23630 b44a1080d4eb3bcb70a5bc0a82694f78 100 Gene3D G3DSA:3.30.70.900 4 85 1.5E-23 T 22-04-2016 PP4_RS23630 b44a1080d4eb3bcb70a5bc0a82694f78 100 Pfam PF03992 Antibiotic biosynthesis monooxygenase 5 74 1.1E-17 T 22-04-2016 IPR007138 Antibiotic biosynthesis monooxygenase domain PP4_RS23630 b44a1080d4eb3bcb70a5bc0a82694f78 100 PANTHER PTHR33336 2 85 2.7E-19 T 22-04-2016 PP4_RS06650 a3329ad23ee772d5077c55a62cf99587 195 TIGRFAM TIGR02292 ygfB_yecA: yecA family protein 6 178 5.0E-52 T 22-04-2016 IPR011978 Uncharacterised protein family UPF0149 PP4_RS06650 a3329ad23ee772d5077c55a62cf99587 195 Pfam PF03695 Uncharacterised protein family (UPF0149) 9 181 9.5E-32 T 22-04-2016 IPR011978 Uncharacterised protein family UPF0149 PP4_RS06650 a3329ad23ee772d5077c55a62cf99587 195 SUPERFAMILY SSF101327 9 182 3.66E-19 T 22-04-2016 IPR011978 Uncharacterised protein family UPF0149 PP4_RS20695 c51ca49726d2ef97926e3848d6598cd8 355 Pfam PF09839 Uncharacterized protein conserved in bacteria (DUF2066) 21 248 1.1E-67 T 22-04-2016 IPR018642 Protein of unknown function DUF2066 PP4_RS08455 112d3cc236ceb60795e0667ddcf2071c 186 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 47 69 - T 22-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 PP4_RS08455 112d3cc236ceb60795e0667ddcf2071c 186 Pfam PF01066 CDP-alcohol phosphatidyltransferase 2 69 1.4E-18 T 22-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 PP4_RS08455 112d3cc236ceb60795e0667ddcf2071c 186 PANTHER PTHR14269 1 179 8.2E-88 T 22-04-2016 PP4_RS08455 112d3cc236ceb60795e0667ddcf2071c 186 PANTHER PTHR14269:SF13 1 179 8.2E-88 T 22-04-2016 PP4_RS08455 112d3cc236ceb60795e0667ddcf2071c 186 PIRSF PIRSF000847 1 186 1.5E-50 T 22-04-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 PP4_RS08455 112d3cc236ceb60795e0667ddcf2071c 186 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1 179 3.5E-56 T 22-04-2016 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 PP4_RS20210 b2e1b66d3d358df87f832d6ab9c456d1 610 PANTHER PTHR24221:SF233 19 607 0.0 T 22-04-2016 PP4_RS20210 b2e1b66d3d358df87f832d6ab9c456d1 610 Gene3D G3DSA:3.40.50.300 374 601 3.3E-75 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS20210 b2e1b66d3d358df87f832d6ab9c456d1 610 SUPERFAMILY SSF90123 27 357 5.89E-55 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PP4_RS20210 b2e1b66d3d358df87f832d6ab9c456d1 610 SMART SM00382 398 589 3.1E-13 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS20210 b2e1b66d3d358df87f832d6ab9c456d1 610 Pfam PF00664 ABC transporter transmembrane region 77 327 2.8E-27 T 22-04-2016 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0006810|GO:0016021|GO:0042626|GO:0055085 PP4_RS20210 b2e1b66d3d358df87f832d6ab9c456d1 610 Pfam PF00005 ABC transporter 389 537 2.5E-33 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS20210 b2e1b66d3d358df87f832d6ab9c456d1 610 PANTHER PTHR24221 19 607 0.0 T 22-04-2016 PP4_RS20210 b2e1b66d3d358df87f832d6ab9c456d1 610 ProSitePatterns PS00211 ABC transporters family signature. 509 523 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS20210 b2e1b66d3d358df87f832d6ab9c456d1 610 SUPERFAMILY SSF52540 371 605 3.12E-79 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS20210 b2e1b66d3d358df87f832d6ab9c456d1 610 Gene3D G3DSA:1.20.1560.10 27 360 1.8E-52 T 22-04-2016 PP4_RS03550 8f215046f4e55fde84f3bd1b202043ce 196 Pfam PF02525 Flavodoxin-like fold 2 188 1.1E-36 T 22-04-2016 IPR003680 Flavodoxin-like fold PP4_RS03550 8f215046f4e55fde84f3bd1b202043ce 196 PANTHER PTHR10204:SF36 1 192 2.0E-122 T 22-04-2016 PP4_RS03550 8f215046f4e55fde84f3bd1b202043ce 196 SUPERFAMILY SSF52218 1 193 5.99E-43 T 22-04-2016 IPR029039 Flavoprotein-like domain PP4_RS03550 8f215046f4e55fde84f3bd1b202043ce 196 Gene3D G3DSA:3.40.50.360 1 194 7.0E-44 T 22-04-2016 IPR029039 Flavoprotein-like domain PP4_RS03550 8f215046f4e55fde84f3bd1b202043ce 196 PANTHER PTHR10204 1 192 2.0E-122 T 22-04-2016 PP4_RS12240 8338edce8dd1989b44ea0fdd4f45e8a2 247 PANTHER PTHR23088 1 231 8.6E-34 T 22-04-2016 PP4_RS12240 8338edce8dd1989b44ea0fdd4f45e8a2 247 Pfam PF00795 Carbon-nitrogen hydrolase 4 230 6.3E-29 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PP4_RS12240 8338edce8dd1989b44ea0fdd4f45e8a2 247 Gene3D G3DSA:3.60.110.10 1 231 1.3E-42 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PP4_RS12240 8338edce8dd1989b44ea0fdd4f45e8a2 247 SUPERFAMILY SSF56317 1 231 8.63E-48 T 22-04-2016 IPR003010 Carbon-nitrogen hydrolase GO:0006807|GO:0016810 PP4_RS24710 8c67842ad5176f9e24cf89c120efc4b2 247 PANTHER PTHR36925 1 243 4.6E-71 T 22-04-2016 PP4_RS24710 8c67842ad5176f9e24cf89c120efc4b2 247 Pfam PF02571 Precorrin-6x reductase CbiJ/CobK 4 235 9.5E-58 T 22-04-2016 IPR003723 Precorrin-6x reductase GO:0009236|GO:0016994|GO:0055114 PP4_RS24710 8c67842ad5176f9e24cf89c120efc4b2 247 ProSitePatterns PS00304 Small, acid-soluble spore proteins, alpha/beta type, signature 1. 201 210 - T 22-04-2016 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site GO:0003690|GO:0006265 PP4_RS23925 1d5b3816d974a2c288ac93203e882be8 196 PANTHER PTHR18901:SF25 1 186 1.2E-86 T 22-04-2016 PP4_RS23925 1d5b3816d974a2c288ac93203e882be8 196 Gene3D G3DSA:3.40.50.1000 8 20 1.1E-28 T 22-04-2016 IPR023214 HAD-like domain PP4_RS23925 1d5b3816d974a2c288ac93203e882be8 196 Gene3D G3DSA:3.40.50.1000 69 185 1.1E-28 T 22-04-2016 IPR023214 HAD-like domain PP4_RS23925 1d5b3816d974a2c288ac93203e882be8 196 Pfam PF13419 Haloacid dehalogenase-like hydrolase 68 170 4.5E-16 T 22-04-2016 IPR023214 HAD-like domain PP4_RS23925 1d5b3816d974a2c288ac93203e882be8 196 PANTHER PTHR18901 1 186 1.2E-86 T 22-04-2016 PP4_RS23925 1d5b3816d974a2c288ac93203e882be8 196 SUPERFAMILY SSF56784 7 185 3.03E-35 T 22-04-2016 IPR023214 HAD-like domain PP4_RS23925 1d5b3816d974a2c288ac93203e882be8 196 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 10 164 6.9E-9 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PP4_RS23925 1d5b3816d974a2c288ac93203e882be8 196 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 9 170 1.8E-7 T 22-04-2016 IPR006439 HAD hydrolase, subfamily IA GO:0008152|GO:0016787 PP4_RS09145 6ad37e111fc9fa799809d455879b37d1 105 PANTHER PTHR10094:SF13 23 103 5.3E-21 T 22-04-2016 PP4_RS09145 6ad37e111fc9fa799809d455879b37d1 105 Gene3D G3DSA:3.30.1050.10 3 103 1.3E-29 T 22-04-2016 IPR003033 SCP2 sterol-binding domain PP4_RS09145 6ad37e111fc9fa799809d455879b37d1 105 PANTHER PTHR10094 23 103 5.3E-21 T 22-04-2016 PP4_RS09145 6ad37e111fc9fa799809d455879b37d1 105 Pfam PF02036 SCP-2 sterol transfer family 15 103 2.1E-20 T 22-04-2016 IPR003033 SCP2 sterol-binding domain PP4_RS09145 6ad37e111fc9fa799809d455879b37d1 105 SUPERFAMILY SSF55718 2 103 2.35E-29 T 22-04-2016 IPR003033 SCP2 sterol-binding domain PP4_RS14730 42d6429f76b3fa90d8592f912a7e516b 126 Pfam PF08765 Mor transcription activator family 51 118 9.2E-7 T 22-04-2016 IPR014875 Mor transcription activator PP4_RS14730 42d6429f76b3fa90d8592f912a7e516b 126 SUPERFAMILY SSF46689 14 121 5.02E-16 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS23950 87dd2db260c2db5b3a469c10696d8969 413 PANTHER PTHR10617:SF103 342 413 2.8E-48 T 22-04-2016 PP4_RS23950 87dd2db260c2db5b3a469c10696d8969 413 PANTHER PTHR10617:SF103 13 310 2.8E-48 T 22-04-2016 PP4_RS23950 87dd2db260c2db5b3a469c10696d8969 413 TIGRFAM TIGR00275 TIGR00275: flavoprotein, HI0933 family 13 403 7.5E-86 T 22-04-2016 IPR004792 Conserved hypothetical protein CHP00275, flavoprotein HI0933-like PP4_RS23950 87dd2db260c2db5b3a469c10696d8969 413 SUPERFAMILY SSF51905 349 408 1.37E-43 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS23950 87dd2db260c2db5b3a469c10696d8969 413 SUPERFAMILY SSF51905 13 200 1.37E-43 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS23950 87dd2db260c2db5b3a469c10696d8969 413 TIGRFAM TIGR03862 flavo_PP4765: flavoprotein, TIGR03862 family 32 409 3.5E-163 T 22-04-2016 IPR022460 Conserved hyptotheical protein CHP03862, flavoprotein, PP4765 PP4_RS23950 87dd2db260c2db5b3a469c10696d8969 413 SUPERFAMILY SSF160996 211 350 1.57E-10 T 22-04-2016 PP4_RS23950 87dd2db260c2db5b3a469c10696d8969 413 PANTHER PTHR10617 342 413 2.8E-48 T 22-04-2016 PP4_RS23950 87dd2db260c2db5b3a469c10696d8969 413 PANTHER PTHR10617 13 310 2.8E-48 T 22-04-2016 PP4_RS23950 87dd2db260c2db5b3a469c10696d8969 413 Pfam PF03486 HI0933-like protein 12 403 4.0E-114 T 22-04-2016 PP4_RS23950 87dd2db260c2db5b3a469c10696d8969 413 Gene3D G3DSA:3.50.50.60 351 406 1.3E-37 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS23950 87dd2db260c2db5b3a469c10696d8969 413 Gene3D G3DSA:3.50.50.60 12 196 1.3E-37 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS05380 0ceebe37ed6c37d0d14b11f4a7c38587 161 Gene3D G3DSA:2.60.40.10 34 141 6.6E-10 T 22-04-2016 IPR013783 Immunoglobulin-like fold PP4_RS05380 0ceebe37ed6c37d0d14b11f4a7c38587 161 Pfam PF03168 Late embryogenesis abundant protein 56 151 7.8E-12 T 22-04-2016 IPR004864 Late embryogenesis abundant protein, LEA-14 PP4_RS05380 0ceebe37ed6c37d0d14b11f4a7c38587 161 SUPERFAMILY SSF117070 13 153 7.19E-22 T 22-04-2016 PP4_RS05380 0ceebe37ed6c37d0d14b11f4a7c38587 161 SMART SM00769 36 154 1.2E-16 T 22-04-2016 IPR013990 Water stress and hypersensitive response domain GO:0009269 PP4_RS14825 a43ab9118ae35c5610aaaf4b3f08ff2b 380 SUPERFAMILY SSF56601 25 378 3.6E-90 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS14825 a43ab9118ae35c5610aaaf4b3f08ff2b 380 PANTHER PTHR22935 26 378 8.2E-55 T 22-04-2016 PP4_RS14825 a43ab9118ae35c5610aaaf4b3f08ff2b 380 ProSitePatterns PS00336 Beta-lactamase class-C active site. 80 87 - T 22-04-2016 IPR001586 Beta-lactamase, class-C active site GO:0008800|GO:0017001|GO:0030288 KEGG: 00311+3.5.2.6 PP4_RS14825 a43ab9118ae35c5610aaaf4b3f08ff2b 380 PANTHER PTHR22935:SF64 26 378 8.2E-55 T 22-04-2016 PP4_RS14825 a43ab9118ae35c5610aaaf4b3f08ff2b 380 Pfam PF00144 Beta-lactamase 32 376 3.9E-66 T 22-04-2016 IPR001466 Beta-lactamase-related PP4_RS14825 a43ab9118ae35c5610aaaf4b3f08ff2b 380 Gene3D G3DSA:3.40.710.10 26 376 9.1E-78 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS03695 33829e769ea9f735edbc302262106c03 88 Pfam PF13670 Peptidase propeptide and YPEB domain 3 85 1.5E-32 T 22-04-2016 IPR025711 PepSY domain PP4_RS03695 33829e769ea9f735edbc302262106c03 88 Gene3D G3DSA:3.10.180.10 30 77 2.0E-6 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PP4_RS03695 33829e769ea9f735edbc302262106c03 88 SUPERFAMILY SSF54593 29 76 6.07E-5 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PP4_RS02440 0c4907d1cba2314cdb7fd2b77f9dc620 122 Gene3D G3DSA:1.20.5.1030 62 121 2.9E-25 T 22-04-2016 PP4_RS02440 0c4907d1cba2314cdb7fd2b77f9dc620 122 PANTHER PTHR33910 1 122 4.7E-27 T 22-04-2016 PP4_RS02440 0c4907d1cba2314cdb7fd2b77f9dc620 122 PRINTS PR01650 Bacterial translocase SecE signature 42 63 1.44E-26 T 22-04-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 PP4_RS02440 0c4907d1cba2314cdb7fd2b77f9dc620 122 PRINTS PR01650 Bacterial translocase SecE signature 63 83 1.44E-26 T 22-04-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 PP4_RS02440 0c4907d1cba2314cdb7fd2b77f9dc620 122 PRINTS PR01650 Bacterial translocase SecE signature 107 122 1.44E-26 T 22-04-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 PP4_RS02440 0c4907d1cba2314cdb7fd2b77f9dc620 122 PRINTS PR01650 Bacterial translocase SecE signature 87 107 1.44E-26 T 22-04-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 PP4_RS02440 0c4907d1cba2314cdb7fd2b77f9dc620 122 Hamap MF_00422 Protein translocase subunit SecE [secE]. 61 119 13.432 T 22-04-2016 IPR022943 Preprotein translocase subunit SecE PP4_RS02440 0c4907d1cba2314cdb7fd2b77f9dc620 122 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 69 97 - T 22-04-2016 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 PP4_RS02440 0c4907d1cba2314cdb7fd2b77f9dc620 122 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 70 120 1.3E-19 T 22-04-2016 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 PP4_RS02440 0c4907d1cba2314cdb7fd2b77f9dc620 122 PANTHER PTHR33910:SF1 1 122 4.7E-27 T 22-04-2016 PP4_RS02440 0c4907d1cba2314cdb7fd2b77f9dc620 122 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 66 122 1.2E-20 T 22-04-2016 IPR005807 SecE subunit of protein translocation complex GO:0009306|GO:0015450|GO:0016021 PP4_RS21415 882a79e4aaa909abc43c9f30cbef674d 401 PANTHER PTHR22777 75 397 1.6E-71 T 22-04-2016 PP4_RS21415 882a79e4aaa909abc43c9f30cbef674d 401 SMART SM01091 321 400 4.2E-19 T 22-04-2016 IPR005170 Transporter-associated domain PP4_RS21415 882a79e4aaa909abc43c9f30cbef674d 401 Gene3D G3DSA:3.30.465.10 301 397 2.5E-22 T 22-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 PP4_RS21415 882a79e4aaa909abc43c9f30cbef674d 401 Pfam PF00571 CBS domain 259 306 3.7E-6 T 22-04-2016 IPR000644 CBS domain PP4_RS21415 882a79e4aaa909abc43c9f30cbef674d 401 SUPERFAMILY SSF56176 319 399 2.1E-17 T 22-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 PP4_RS21415 882a79e4aaa909abc43c9f30cbef674d 401 Pfam PF03471 Transporter associated domain 323 396 3.8E-14 T 22-04-2016 IPR005170 Transporter-associated domain PP4_RS21415 882a79e4aaa909abc43c9f30cbef674d 401 Gene3D G3DSA:3.10.580.10 175 300 2.3E-14 T 22-04-2016 PP4_RS21415 882a79e4aaa909abc43c9f30cbef674d 401 SUPERFAMILY SSF54631 180 325 1.15E-22 T 22-04-2016 PP4_RS21415 882a79e4aaa909abc43c9f30cbef674d 401 Pfam PF01595 Domain of unknown function DUF21 69 161 1.7E-9 T 22-04-2016 IPR002550 Domain of unknown function DUF21 PP4_RS04350 31ebd6e4b5fd1a9018015773f7bd72f6 303 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 4 275 2.6E-108 T 22-04-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 PP4_RS04350 31ebd6e4b5fd1a9018015773f7bd72f6 303 PANTHER PTHR33694 1 303 3.7E-134 T 22-04-2016 PP4_RS04350 31ebd6e4b5fd1a9018015773f7bd72f6 303 PANTHER PTHR33694:SF1 1 303 3.7E-134 T 22-04-2016 PP4_RS04350 31ebd6e4b5fd1a9018015773f7bd72f6 303 Gene3D G3DSA:3.30.1700.10 128 282 4.8E-60 T 22-04-2016 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 PP4_RS04350 31ebd6e4b5fd1a9018015773f7bd72f6 303 Hamap MF_00388 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [lpxC]. 2 280 49.429 T 22-04-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 PP4_RS04350 31ebd6e4b5fd1a9018015773f7bd72f6 303 SUPERFAMILY SSF54211 134 277 6.3E-52 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PP4_RS04350 31ebd6e4b5fd1a9018015773f7bd72f6 303 SUPERFAMILY SSF54211 3 124 1.37E-42 T 22-04-2016 IPR020568 Ribosomal protein S5 domain 2-type fold PP4_RS04350 31ebd6e4b5fd1a9018015773f7bd72f6 303 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2 298 2.6E-119 T 22-04-2016 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 PP4_RS04350 31ebd6e4b5fd1a9018015773f7bd72f6 303 Gene3D G3DSA:3.30.230.20 3 125 2.7E-47 T 22-04-2016 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108|KEGG: 00630+3.5.1.10|KEGG: 00670+3.5.1.10|MetaCyc: PWY-2201|MetaCyc: PWY-5497|UniPathway: UPA00359 PP4_RS17400 90d9a24efad47f38d35709c303f7f09f 153 Pfam PF00072 Response regulator receiver domain 5 127 7.5E-19 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS17400 90d9a24efad47f38d35709c303f7f09f 153 PANTHER PTHR26402 3 127 4.9E-30 T 22-04-2016 PP4_RS17400 90d9a24efad47f38d35709c303f7f09f 153 SMART SM00448 3 127 5.0E-30 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS17400 90d9a24efad47f38d35709c303f7f09f 153 Gene3D G3DSA:3.40.50.2300 5 130 4.8E-33 T 22-04-2016 PP4_RS17400 90d9a24efad47f38d35709c303f7f09f 153 SUPERFAMILY SSF52172 5 130 3.98E-30 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS15600 4f760f5f618720ae8192064bb39e0062 330 Pfam PF00092 von Willebrand factor type A domain 93 275 1.3E-25 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS15600 4f760f5f618720ae8192064bb39e0062 330 PANTHER PTHR22550 1 307 1.5E-93 T 22-04-2016 PP4_RS15600 4f760f5f618720ae8192064bb39e0062 330 SMART SM00327 91 275 7.0E-19 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS15600 4f760f5f618720ae8192064bb39e0062 330 SUPERFAMILY SSF53300 89 278 5.34E-35 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS15600 4f760f5f618720ae8192064bb39e0062 330 PANTHER PTHR22550:SF12 1 307 1.5E-93 T 22-04-2016 PP4_RS15600 4f760f5f618720ae8192064bb39e0062 330 Gene3D G3DSA:3.40.50.410 92 277 1.2E-22 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS15285 741e5dbd9864bc42a527e9c60470bbc4 447 PANTHER PTHR32507 1 269 1.0E-121 T 22-04-2016 PP4_RS15285 741e5dbd9864bc42a527e9c60470bbc4 447 PANTHER PTHR32507 315 439 1.0E-121 T 22-04-2016 PP4_RS15285 741e5dbd9864bc42a527e9c60470bbc4 447 Pfam PF00999 Sodium/hydrogen exchanger family 12 270 8.1E-29 T 22-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 PP4_RS15285 741e5dbd9864bc42a527e9c60470bbc4 447 PANTHER PTHR32507:SF12 1 269 1.0E-121 T 22-04-2016 PP4_RS15285 741e5dbd9864bc42a527e9c60470bbc4 447 PANTHER PTHR32507:SF12 315 439 1.0E-121 T 22-04-2016 PP4_RS22255 e11ee6079cb57af5a13698714d5f2b77 213 Pfam PF09976 Tetratricopeptide repeat-like domain 13 210 5.8E-59 T 22-04-2016 IPR018704 Tetratricopeptide repeat-like domain PP4_RS22255 e11ee6079cb57af5a13698714d5f2b77 213 PANTHER PTHR38035 1 210 1.8E-72 T 22-04-2016 PP4_RS22255 e11ee6079cb57af5a13698714d5f2b77 213 PIRSF PIRSF006170 1 213 1.7E-59 T 22-04-2016 IPR026039 Uncharacterised protein family UPF0070 PP4_RS21840 d8b70fd9449c610d677b4460520c38ef 158 Pfam PF12680 SnoaL-like domain 10 110 1.3E-14 T 22-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain PP4_RS21840 d8b70fd9449c610d677b4460520c38ef 158 SUPERFAMILY SSF54427 1 133 2.85E-30 T 22-04-2016 IPR032710 NTF2-like domain PP4_RS21840 d8b70fd9449c610d677b4460520c38ef 158 Gene3D G3DSA:3.10.450.50 1 123 2.2E-24 T 22-04-2016 IPR032710 NTF2-like domain PP4_RS25320 522ade506c953855c40f71b3147722cf 166 PANTHER PTHR30399:SF4 1 162 2.3E-94 T 22-04-2016 PP4_RS25320 522ade506c953855c40f71b3147722cf 166 PANTHER PTHR30399 1 162 2.3E-94 T 22-04-2016 PP4_RS25320 522ade506c953855c40f71b3147722cf 166 Pfam PF01863 Protein of unknown function DUF45 74 154 2.0E-13 T 22-04-2016 IPR002725 Protein of unknown function DUF45 PP4_RS19165 77a49687d32ecb7ab6671647c20af379 380 PANTHER PTHR30344:SF1 1 380 1.8E-106 T 22-04-2016 PP4_RS19165 77a49687d32ecb7ab6671647c20af379 380 SUPERFAMILY SSF51004 34 368 6.8E-48 T 22-04-2016 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain PP4_RS19165 77a49687d32ecb7ab6671647c20af379 380 Gene3D G3DSA:2.130.10.10 28 379 5.9E-94 T 22-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 PP4_RS19165 77a49687d32ecb7ab6671647c20af379 380 PANTHER PTHR30344 1 380 1.8E-106 T 22-04-2016 PP4_RS19165 77a49687d32ecb7ab6671647c20af379 380 Pfam PF10282 Lactonase, 7-bladed beta-propeller 28 378 7.8E-113 T 22-04-2016 IPR019405 Lactonase, 7-bladed beta propeller KEGG: 00030+3.1.1.31|UniPathway: UPA00115 PP4_RS12275 0a388f6bac7f65d67cf814ab3e9e5561 91 SUPERFAMILY SSF54534 3 87 9.16E-25 T 22-04-2016 PP4_RS12275 0a388f6bac7f65d67cf814ab3e9e5561 91 Gene3D G3DSA:3.10.50.40 2 87 6.2E-28 T 22-04-2016 PP4_RS12275 0a388f6bac7f65d67cf814ab3e9e5561 91 Pfam PF00639 PPIC-type PPIASE domain 11 86 1.2E-16 T 22-04-2016 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0016853 PP4_RS12275 0a388f6bac7f65d67cf814ab3e9e5561 91 ProSitePatterns PS01096 PpiC-type peptidyl-prolyl cis-trans isomerase signature. 29 49 - T 22-04-2016 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site PP4_RS12275 0a388f6bac7f65d67cf814ab3e9e5561 91 PANTHER PTHR10657 5 86 1.9E-29 T 22-04-2016 PP4_RS18420 5e64878c0f838238f5f6fcc4d66ac8e0 310 PANTHER PTHR11562 1 306 4.9E-123 T 22-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 PP4_RS18420 5e64878c0f838238f5f6fcc4d66ac8e0 310 Gene3D G3DSA:1.20.1510.10 23 237 4.7E-49 T 22-04-2016 IPR027469 Cation efflux protein transmembrane domain PP4_RS18420 5e64878c0f838238f5f6fcc4d66ac8e0 310 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 23 309 1.5E-63 T 22-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 PP4_RS18420 5e64878c0f838238f5f6fcc4d66ac8e0 310 PANTHER PTHR11562:SF40 1 306 4.9E-123 T 22-04-2016 PP4_RS18420 5e64878c0f838238f5f6fcc4d66ac8e0 310 Pfam PF01545 Cation efflux family 29 236 4.9E-33 T 22-04-2016 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 PP4_RS18420 5e64878c0f838238f5f6fcc4d66ac8e0 310 SUPERFAMILY SSF161111 21 238 1.2E-47 T 22-04-2016 PP4_RS08685 be8ecf69e5de96350a865bd02595bd71 94 Pfam PF11154 Protein of unknown function (DUF2934) 5 39 3.5E-13 T 22-04-2016 IPR021327 Protein of unknown function DUF2934 PP4_RS22490 c2518990770fc8f00514062553ade22d 208 SUPERFAMILY SSF81452 15 206 2.35E-57 T 22-04-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 PP4_RS22490 c2518990770fc8f00514062553ade22d 208 TIGRFAM TIGR02842 CyoC: cytochrome o ubiquinol oxidase, subunit III 29 208 6.0E-86 T 22-04-2016 IPR014206 Cytochrome o ubiquinol oxidase, subunit III GO:0005886|GO:0008827|GO:0019646 PP4_RS22490 c2518990770fc8f00514062553ade22d 208 PANTHER PTHR11403:SF2 18 208 2.1E-106 T 22-04-2016 PP4_RS22490 c2518990770fc8f00514062553ade22d 208 Pfam PF00510 Cytochrome c oxidase subunit III 27 206 9.0E-16 T 22-04-2016 IPR000298 Cytochrome c oxidase subunit III domain GO:0015002|GO:0016020 PP4_RS22490 c2518990770fc8f00514062553ade22d 208 PANTHER PTHR11403 18 208 2.1E-106 T 22-04-2016 IPR024791 Cytochrome c oxidase subunit III GO:0015002|GO:0016020|GO:0019646 PP4_RS22490 c2518990770fc8f00514062553ade22d 208 Gene3D G3DSA:1.20.120.80 27 206 2.7E-50 T 22-04-2016 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle GO:0004129|GO:0016020|GO:0022904 PP4_RS09885 6e1c123ab283912badf0e5ea68f0aa50 566 PANTHER PTHR13789:SF219 9 455 1.3E-102 T 22-04-2016 PP4_RS09885 6e1c123ab283912badf0e5ea68f0aa50 566 PANTHER PTHR13789 9 455 1.3E-102 T 22-04-2016 PP4_RS09885 6e1c123ab283912badf0e5ea68f0aa50 566 SUPERFAMILY SSF51905 35 204 8.6E-57 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS09885 6e1c123ab283912badf0e5ea68f0aa50 566 SUPERFAMILY SSF51905 299 410 8.6E-57 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS09885 6e1c123ab283912badf0e5ea68f0aa50 566 Gene3D G3DSA:3.30.9.10 360 388 1.4E-12 T 22-04-2016 PP4_RS09885 6e1c123ab283912badf0e5ea68f0aa50 566 Gene3D G3DSA:3.30.9.10 196 305 1.4E-12 T 22-04-2016 PP4_RS09885 6e1c123ab283912badf0e5ea68f0aa50 566 Gene3D G3DSA:3.50.50.60 33 195 4.5E-42 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS09885 6e1c123ab283912badf0e5ea68f0aa50 566 Gene3D G3DSA:3.50.50.60 310 348 4.5E-42 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS09885 6e1c123ab283912badf0e5ea68f0aa50 566 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 345 363 7.3E-31 T 22-04-2016 PP4_RS09885 6e1c123ab283912badf0e5ea68f0aa50 566 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 312 327 7.3E-31 T 22-04-2016 PP4_RS09885 6e1c123ab283912badf0e5ea68f0aa50 566 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 327 343 7.3E-31 T 22-04-2016 PP4_RS09885 6e1c123ab283912badf0e5ea68f0aa50 566 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 35 57 7.3E-31 T 22-04-2016 PP4_RS09885 6e1c123ab283912badf0e5ea68f0aa50 566 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 363 379 7.3E-31 T 22-04-2016 PP4_RS09885 6e1c123ab283912badf0e5ea68f0aa50 566 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 183 198 7.3E-31 T 22-04-2016 PP4_RS09885 6e1c123ab283912badf0e5ea68f0aa50 566 Pfam PF01494 FAD binding domain 35 375 6.6E-58 T 22-04-2016 IPR002938 FAD-binding domain GO:0071949 PP4_RS19160 b8763f697579af61886abc0261e1e01f 197 Gene3D G3DSA:1.20.1050.10 92 183 1.4E-15 T 22-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like PP4_RS19160 b8763f697579af61886abc0261e1e01f 197 Pfam PF13410 Glutathione S-transferase, C-terminal domain 118 183 4.4E-12 T 22-04-2016 PP4_RS19160 b8763f697579af61886abc0261e1e01f 197 Gene3D G3DSA:3.40.30.10 2 91 2.8E-25 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS19160 b8763f697579af61886abc0261e1e01f 197 Pfam PF13417 Glutathione S-transferase, N-terminal domain 3 73 1.4E-19 T 22-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 PP4_RS19160 b8763f697579af61886abc0261e1e01f 197 SUPERFAMILY SSF47616 82 195 6.41E-22 T 22-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like PP4_RS19160 b8763f697579af61886abc0261e1e01f 197 SUPERFAMILY SSF52833 1 101 5.33E-21 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS19160 b8763f697579af61886abc0261e1e01f 197 PANTHER PTHR11260 1 195 1.3E-27 T 22-04-2016 PP4_RS24820 ba655cb6ea9daf8f2fb004e5e5b198b0 296 Pfam PF00561 alpha/beta hydrolase fold 10 114 7.3E-12 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS24820 ba655cb6ea9daf8f2fb004e5e5b198b0 296 Gene3D G3DSA:3.40.50.1820 5 295 2.3E-47 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS24820 ba655cb6ea9daf8f2fb004e5e5b198b0 296 PANTHER PTHR11440 7 117 1.3E-12 T 22-04-2016 PP4_RS24820 ba655cb6ea9daf8f2fb004e5e5b198b0 296 SUPERFAMILY SSF53474 7 268 4.37E-40 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS19865 82db67bdc2496f763bfaa420ccb697e3 685 PANTHER PTHR10342:SF236 266 654 1.5E-82 T 22-04-2016 PP4_RS19865 82db67bdc2496f763bfaa420ccb697e3 685 Pfam PF00884 Sulfatase 304 582 2.3E-46 T 22-04-2016 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 PP4_RS19865 82db67bdc2496f763bfaa420ccb697e3 685 SUPERFAMILY SSF53649 304 669 1.54E-62 T 22-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 PP4_RS19865 82db67bdc2496f763bfaa420ccb697e3 685 PIRSF PIRSF005091 13 684 2.9E-168 T 22-04-2016 IPR012160 Lipoteichoic acid synthase-like KEGG: 00440+2.7.8.-|KEGG: 00513+2.7.8.-|KEGG: 00540+2.7.8.-|KEGG: 00564+2.7.8.-|KEGG: 00600+2.7.8.-|KEGG: 00770+2.7.8.-|UniPathway: UPA00556 PP4_RS19865 82db67bdc2496f763bfaa420ccb697e3 685 Gene3D G3DSA:3.40.720.10 304 600 5.3E-38 T 22-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 PP4_RS19865 82db67bdc2496f763bfaa420ccb697e3 685 PANTHER PTHR10342 266 654 1.5E-82 T 22-04-2016 PP4_RS17375 0b104ba553a4bf98a23ee50dac6fe285 167 PANTHER PTHR37089 8 167 4.9E-29 T 22-04-2016 PP4_RS17375 0b104ba553a4bf98a23ee50dac6fe285 167 SMART SM00972 108 164 2.3E-20 T 22-04-2016 IPR007893 Spore coat protein U PP4_RS17375 0b104ba553a4bf98a23ee50dac6fe285 167 Pfam PF05229 Spore Coat Protein U domain 25 164 4.9E-34 T 22-04-2016 IPR007893 Spore coat protein U PP4_RS04495 a178580d7cb7c181ea5742dd188208f9 365 Gene3D G3DSA:2.130.10.10 62 350 8.4E-17 T 22-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 PP4_RS04495 a178580d7cb7c181ea5742dd188208f9 365 PIRSF PIRSF028101 1 365 8.2E-157 T 22-04-2016 IPR008311 Uncharacterised conserved protein UCP028101 PP4_RS04495 a178580d7cb7c181ea5742dd188208f9 365 SUPERFAMILY SSF50969 53 349 3.06E-21 T 22-04-2016 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like PP4_RS04495 a178580d7cb7c181ea5742dd188208f9 365 Pfam PF07433 Protein of unknown function (DUF1513) 61 364 2.1E-113 T 22-04-2016 IPR008311 Uncharacterised conserved protein UCP028101 PP4_RS09675 ac01e0c2c50a3e073f97819194c75a84 319 PANTHER PTHR32196 9 318 1.6E-78 T 22-04-2016 PP4_RS09675 ac01e0c2c50a3e073f97819194c75a84 319 Gene3D G3DSA:3.40.50.2300 27 159 1.2E-35 T 22-04-2016 PP4_RS09675 ac01e0c2c50a3e073f97819194c75a84 319 SUPERFAMILY SSF53822 17 318 3.53E-71 T 22-04-2016 IPR028082 Periplasmic binding protein-like I PP4_RS09675 ac01e0c2c50a3e073f97819194c75a84 319 Pfam PF13407 Periplasmic binding protein domain 35 299 1.2E-52 T 22-04-2016 IPR025997 Periplasmic binding protein PP4_RS09675 ac01e0c2c50a3e073f97819194c75a84 319 Gene3D G3DSA:3.40.50.2300 160 318 1.7E-45 T 22-04-2016 PP4_RS09675 ac01e0c2c50a3e073f97819194c75a84 319 PANTHER PTHR32196:SF9 9 318 1.6E-78 T 22-04-2016 PP4_RS01615 13e2bfd1d9109d2bec9810ee1f7b3375 212 SUPERFAMILY SSF52317 2 208 1.38E-54 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS01615 13e2bfd1d9109d2bec9810ee1f7b3375 212 PANTHER PTHR21235:SF1 4 208 4.2E-84 T 22-04-2016 PP4_RS01615 13e2bfd1d9109d2bec9810ee1f7b3375 212 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 3 208 34.485 T 22-04-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 UniPathway: UPA00031 PP4_RS01615 13e2bfd1d9109d2bec9810ee1f7b3375 212 PANTHER PTHR21235 4 208 4.2E-84 T 22-04-2016 PP4_RS01615 13e2bfd1d9109d2bec9810ee1f7b3375 212 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 4 207 2.8E-65 T 22-04-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 UniPathway: UPA00031 PP4_RS01615 13e2bfd1d9109d2bec9810ee1f7b3375 212 Gene3D G3DSA:3.40.50.880 1 208 3.3E-77 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS01615 13e2bfd1d9109d2bec9810ee1f7b3375 212 PIRSF PIRSF000495 2 210 1.1E-66 T 22-04-2016 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 UniPathway: UPA00031 PP4_RS01615 13e2bfd1d9109d2bec9810ee1f7b3375 212 Pfam PF00117 Glutamine amidotransferase class-I 6 206 5.3E-18 T 22-04-2016 IPR017926 Glutamine amidotransferase Reactome: REACT_1698 PP4_RS18815 0dfc5780e17265993d9eab007647bf3f 143 Pfam PF08291 Peptidase M15 5 119 1.6E-33 T 22-04-2016 IPR013230 Peptidase M15A, C-terminal MetaCyc: PWY-6470 PP4_RS18815 0dfc5780e17265993d9eab007647bf3f 143 SUPERFAMILY SSF55166 6 127 1.57E-28 T 22-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain PP4_RS18815 0dfc5780e17265993d9eab007647bf3f 143 Gene3D G3DSA:3.30.1380.10 6 130 5.0E-32 T 22-04-2016 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain PP4_RS16950 4adff62f27ee61a0d98acaa60c370f3e 399 Pfam PF07690 Major Facilitator Superfamily 25 354 1.8E-33 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS16950 4adff62f27ee61a0d98acaa60c370f3e 399 Hamap MF_00517 Probable sugar efflux transporter [sotB]. 7 396 28.007 T 22-04-2016 IPR023495 Sugar efflux transporter, putative PP4_RS16950 4adff62f27ee61a0d98acaa60c370f3e 399 SUPERFAMILY SSF103473 8 394 1.06E-54 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS16950 4adff62f27ee61a0d98acaa60c370f3e 399 PANTHER PTHR23501 11 397 7.8E-204 T 22-04-2016 PP4_RS16950 4adff62f27ee61a0d98acaa60c370f3e 399 Gene3D G3DSA:1.20.1250.20 213 388 4.4E-10 T 22-04-2016 PP4_RS16950 4adff62f27ee61a0d98acaa60c370f3e 399 Gene3D G3DSA:1.20.1250.20 21 194 6.4E-27 T 22-04-2016 PP4_RS16950 4adff62f27ee61a0d98acaa60c370f3e 399 PANTHER PTHR23501:SF89 11 397 7.8E-204 T 22-04-2016 PP4_RS05910 a230c7795d7ad16f9ebe61edb629356a 231 PANTHER PTHR30625:SF3 10 231 2.1E-76 T 22-04-2016 PP4_RS05910 a230c7795d7ad16f9ebe61edb629356a 231 PANTHER PTHR30625 10 231 2.1E-76 T 22-04-2016 PP4_RS05910 a230c7795d7ad16f9ebe61edb629356a 231 TIGRFAM TIGR02796 tolQ: protein TolQ 10 224 1.0E-90 T 22-04-2016 IPR014163 Tol-Pal system, TolQ GO:0015031|GO:0016021 PP4_RS05910 a230c7795d7ad16f9ebe61edb629356a 231 Pfam PF01618 MotA/TolQ/ExbB proton channel family 82 210 5.4E-44 T 22-04-2016 IPR002898 MotA/TolQ/ExbB proton channel GO:0006810|GO:0008565|GO:0016020 PP4_RS25615 d8cb7d0329eb6d38295129a079c664cf 111 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 2 92 21.384 T 22-04-2016 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31|UniPathway: UPA00031 PP4_RS25615 d8cb7d0329eb6d38295129a079c664cf 111 SUPERFAMILY SSF101386 4 98 2.11E-24 T 22-04-2016 PP4_RS25615 d8cb7d0329eb6d38295129a079c664cf 111 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 6 95 6.0E-17 T 22-04-2016 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31|UniPathway: UPA00031 PP4_RS25615 d8cb7d0329eb6d38295129a079c664cf 111 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 5 92 5.3E-29 T 22-04-2016 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31|UniPathway: UPA00031 PP4_RS25615 d8cb7d0329eb6d38295129a079c664cf 111 PANTHER PTHR21256 3 109 4.7E-42 T 22-04-2016 PP4_RS23150 067aa04a41ae580937d0cdf21b45fae7 162 Pfam PF11220 Protein of unknown function (DUF3015) 19 158 4.6E-54 T 22-04-2016 IPR021383 Protein of unknown function DUF3015 PP4_RS06430 0fa9eba7995d8b7535613de02a03e499 319 TIGRFAM TIGR00765 yihY_not_rbn: YihY family inner membrane protein 18 275 1.0E-44 T 22-04-2016 IPR017039 Virulence factor BrkB PP4_RS06430 0fa9eba7995d8b7535613de02a03e499 319 Pfam PF03631 Virulence factor BrkB 24 277 3.2E-71 T 22-04-2016 IPR017039 Virulence factor BrkB PP4_RS06430 0fa9eba7995d8b7535613de02a03e499 319 PANTHER PTHR30213 10 318 5.1E-77 T 22-04-2016 PP4_RS06430 0fa9eba7995d8b7535613de02a03e499 319 PIRSF PIRSF035875 7 298 1.7E-91 T 22-04-2016 IPR017039 Virulence factor BrkB PP4_RS06430 0fa9eba7995d8b7535613de02a03e499 319 PANTHER PTHR30213:SF1 10 318 5.1E-77 T 22-04-2016 PP4_RS08055 476fe2a73f197565967b6dee0944f35c 241 SUPERFAMILY SSF53474 11 237 5.92E-36 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS08055 476fe2a73f197565967b6dee0944f35c 241 PANTHER PTHR22946:SF4 1 241 3.3E-108 T 22-04-2016 PP4_RS08055 476fe2a73f197565967b6dee0944f35c 241 PANTHER PTHR22946 1 241 3.3E-108 T 22-04-2016 PP4_RS08055 476fe2a73f197565967b6dee0944f35c 241 Gene3D G3DSA:3.40.50.1820 23 236 2.3E-42 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS08055 476fe2a73f197565967b6dee0944f35c 241 Pfam PF01738 Dienelactone hydrolase family 28 238 7.6E-46 T 22-04-2016 IPR002925 Dienelactone hydrolase GO:0016787 PP4_RS20360 fe3e8a1a5cfeec1b0419bacc39b3594c 311 PANTHER PTHR30606 1 311 2.3E-165 T 22-04-2016 PP4_RS20360 fe3e8a1a5cfeec1b0419bacc39b3594c 311 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 4 296 1.3E-82 T 22-04-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 PP4_RS20360 fe3e8a1a5cfeec1b0419bacc39b3594c 311 PANTHER PTHR30606:SF5 1 311 2.3E-165 T 22-04-2016 PP4_RS20360 fe3e8a1a5cfeec1b0419bacc39b3594c 311 TIGRFAM TIGR02207 lipid_A_htrB: lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase 4 306 1.2E-128 T 22-04-2016 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 KEGG: 00600+2.3.1.24|UniPathway: UPA00030 PP4_RS20360 fe3e8a1a5cfeec1b0419bacc39b3594c 311 PIRSF PIRSF026649 1 306 2.0E-97 T 22-04-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 PP4_RS20360 fe3e8a1a5cfeec1b0419bacc39b3594c 311 Hamap MF_01942 Lipid A biosynthesis lauroyltransferase [lpxL]. 3 306 47.443 T 22-04-2016 IPR011920 Lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase GO:0009245|GO:0016021|GO:0016740 KEGG: 00600+2.3.1.24|UniPathway: UPA00030 PP4_RS08230 7113dc9a659c218e2270dd7f39137c91 257 SUPERFAMILY SSF53335 87 179 6.41E-14 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS08230 7113dc9a659c218e2270dd7f39137c91 257 Gene3D G3DSA:3.40.50.150 92 218 1.3E-8 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS01005 c087a949abcf90d2d4b704429d2fe6af 210 Pfam PF01810 LysE type translocator 16 204 7.7E-32 T 22-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PP4_RS01005 c087a949abcf90d2d4b704429d2fe6af 210 PANTHER PTHR30086:SF14 1 210 5.7E-89 T 22-04-2016 PP4_RS01005 c087a949abcf90d2d4b704429d2fe6af 210 PIRSF PIRSF006324 1 207 2.4E-52 T 22-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PP4_RS01005 c087a949abcf90d2d4b704429d2fe6af 210 PANTHER PTHR30086 1 210 5.7E-89 T 22-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PP4_RS12530 833d4d012d15a9121280a1cb9ca3b135 390 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 166 203 2.0E-4 T 22-04-2016 IPR006530 YD repeat PP4_RS12530 833d4d012d15a9121280a1cb9ca3b135 390 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 143 181 1.2E-6 T 22-04-2016 IPR006530 YD repeat PP4_RS12530 833d4d012d15a9121280a1cb9ca3b135 390 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 276 306 0.0014 T 22-04-2016 IPR006530 YD repeat PP4_RS12530 833d4d012d15a9121280a1cb9ca3b135 390 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 204 244 4.2E-4 T 22-04-2016 IPR006530 YD repeat PP4_RS12530 833d4d012d15a9121280a1cb9ca3b135 390 TIGRFAM TIGR01643 YD_repeat_2x: YD repeat (two copies) 326 363 3.4E-7 T 22-04-2016 IPR006530 YD repeat PP4_RS12530 833d4d012d15a9121280a1cb9ca3b135 390 Pfam PF05593 RHS Repeat 93 132 6.7E-6 T 22-04-2016 IPR031325 RHS repeat PP4_RS12530 833d4d012d15a9121280a1cb9ca3b135 390 Pfam PF05593 RHS Repeat 326 361 2.1E-8 T 22-04-2016 IPR031325 RHS repeat PP4_RS12530 833d4d012d15a9121280a1cb9ca3b135 390 PANTHER PTHR32305:SF6 69 388 1.4E-35 T 22-04-2016 PP4_RS12530 833d4d012d15a9121280a1cb9ca3b135 390 PANTHER PTHR32305 69 388 1.4E-35 T 22-04-2016 PP4_RS04265 b1f4f53b9e7d4b110c87df4af0d2220e 605 PANTHER PTHR38038 1 602 1.2E-167 T 22-04-2016 PP4_RS04265 b1f4f53b9e7d4b110c87df4af0d2220e 605 Gene3D G3DSA:3.40.50.2300 525 588 1.3E-54 T 22-04-2016 PP4_RS04265 b1f4f53b9e7d4b110c87df4af0d2220e 605 Gene3D G3DSA:3.40.50.2300 251 360 1.3E-54 T 22-04-2016 PP4_RS04265 b1f4f53b9e7d4b110c87df4af0d2220e 605 PANTHER PTHR38038:SF1 1 602 1.2E-167 T 22-04-2016 PP4_RS04265 b1f4f53b9e7d4b110c87df4af0d2220e 605 Gene3D G3DSA:3.40.50.2300 362 524 3.2E-49 T 22-04-2016 PP4_RS04265 b1f4f53b9e7d4b110c87df4af0d2220e 605 Pfam PF04348 LppC putative lipoprotein 33 595 1.1E-170 T 22-04-2016 IPR007443 Penicillin-binding protein activator LpoA PP4_RS04265 b1f4f53b9e7d4b110c87df4af0d2220e 605 SUPERFAMILY SSF53822 448 599 3.67E-74 T 22-04-2016 IPR028082 Periplasmic binding protein-like I PP4_RS04265 b1f4f53b9e7d4b110c87df4af0d2220e 605 SUPERFAMILY SSF53822 252 420 3.67E-74 T 22-04-2016 IPR028082 Periplasmic binding protein-like I PP4_RS12120 1109da8160c3a8dbf6688dbb77bdab1b 225 SUPERFAMILY SSF52743 2 216 2.09E-23 T 22-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 PP4_RS12120 1109da8160c3a8dbf6688dbb77bdab1b 225 Gene3D G3DSA:3.40.50.200 2 146 1.7E-13 T 22-04-2016 IPR000209 Peptidase S8/S53 domain GO:0004252|GO:0006508 PP4_RS08440 3d04c3f7e3f41bbf94c075ae99132b2e 129 Gene3D G3DSA:1.10.260.40 4 64 1.2E-10 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS08440 3d04c3f7e3f41bbf94c075ae99132b2e 129 SMART SM00530 7 61 8.7E-6 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS08440 3d04c3f7e3f41bbf94c075ae99132b2e 129 SUPERFAMILY SSF47413 3 53 2.17E-10 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS08440 3d04c3f7e3f41bbf94c075ae99132b2e 129 Pfam PF13560 Helix-turn-helix domain 4 52 6.8E-8 T 22-04-2016 PP4_RS21265 3e77f086c7175e54ab33ce8b01dae341 221 SMART SM00260 75 213 7.2E-9 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS21265 3e77f086c7175e54ab33ce8b01dae341 221 Pfam PF01584 CheW-like domain 80 216 1.5E-22 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS21265 3e77f086c7175e54ab33ce8b01dae341 221 SUPERFAMILY SSF50341 78 216 4.97E-21 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS21265 3e77f086c7175e54ab33ce8b01dae341 221 PANTHER PTHR22617 74 220 4.8E-17 T 22-04-2016 PP4_RS13140 af34f002b541280095943648aee92c96 102 Pfam PF04341 Protein of unknown function, DUF485 11 97 4.1E-32 T 22-04-2016 IPR007436 Protein of unknown function DUF485 PP4_RS13140 af34f002b541280095943648aee92c96 102 PANTHER PTHR38598 2 99 1.0E-27 T 22-04-2016 PP4_RS00035 9d5de1965f9b3a8d871d71b5b554efc6 319 SUPERFAMILY SSF52540 28 280 8.67E-20 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS00035 9d5de1965f9b3a8d871d71b5b554efc6 319 Gene3D G3DSA:3.40.50.300 41 180 2.8E-12 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS00035 9d5de1965f9b3a8d871d71b5b554efc6 319 Pfam PF05621 Bacterial TniB protein 20 259 1.6E-38 T 22-04-2016 IPR008868 Bacterial TniB PP4_RS00035 9d5de1965f9b3a8d871d71b5b554efc6 319 SMART SM00382 48 205 1.1E-7 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS24120 fb502e40c135287386060c58f897547e 496 SUPERFAMILY SSF56349 230 462 7.95E-16 T 22-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 PP4_RS24120 fb502e40c135287386060c58f897547e 496 Pfam PF00589 Phage integrase family 232 463 2.0E-10 T 22-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 PP4_RS24120 fb502e40c135287386060c58f897547e 496 Gene3D G3DSA:1.10.443.10 230 463 6.7E-20 T 22-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 PP4_RS26980 056ee4d383010c0906405db36a466778 287 PANTHER PTHR30636 1 287 1.6E-100 T 22-04-2016 PP4_RS26980 056ee4d383010c0906405db36a466778 287 Pfam PF03755 YicC-like family, N-terminal region 2 153 4.0E-40 T 22-04-2016 IPR013527 YicC-like, N-terminal PP4_RS26980 056ee4d383010c0906405db36a466778 287 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 1 287 2.3E-93 T 22-04-2016 IPR005229 Conserved hypothetical protein CHP00255 PP4_RS26980 056ee4d383010c0906405db36a466778 287 Pfam PF08340 Domain of unknown function (DUF1732) 203 287 2.0E-34 T 22-04-2016 IPR013551 Domain of unknown function DUF1732 PP4_RS09015 54c31355aec13e73e456b0a5be61a4c6 388 Pfam PF07690 Major Facilitator Superfamily 12 132 8.6E-10 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS09015 54c31355aec13e73e456b0a5be61a4c6 388 Gene3D G3DSA:1.20.1250.20 11 157 2.3E-12 T 22-04-2016 PP4_RS09015 54c31355aec13e73e456b0a5be61a4c6 388 SUPERFAMILY SSF103473 7 371 6.67E-29 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS09015 54c31355aec13e73e456b0a5be61a4c6 388 Gene3D G3DSA:1.20.1250.20 205 370 1.8E-11 T 22-04-2016 PP4_RS02860 fdcddfde056976ac83c9feddcbf9f2e7 167 SUPERFAMILY SSF101307 17 164 5.23E-48 T 22-04-2016 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 PP4_RS02860 fdcddfde056976ac83c9feddcbf9f2e7 167 PANTHER PTHR36305 8 167 2.5E-66 T 22-04-2016 PP4_RS02860 fdcddfde056976ac83c9feddcbf9f2e7 167 PIRSF PIRSF006162 15 167 2.9E-51 T 22-04-2016 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|UniPathway: UPA00084 PP4_RS02860 fdcddfde056976ac83c9feddcbf9f2e7 167 Pfam PF04608 Phosphatidylglycerophosphatase A 23 162 4.2E-54 T 22-04-2016 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 PP4_RS01795 65cf40b2bc6a4d55c300f8e1f0fdd4c7 210 Pfam PF04268 Sarcosine oxidase, gamma subunit family 54 203 1.0E-49 T 22-04-2016 IPR007375 Sarcosine oxidase, gamma subunit KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 PP4_RS01795 65cf40b2bc6a4d55c300f8e1f0fdd4c7 210 Gene3D G3DSA:3.30.1360.120 120 206 1.2E-5 T 22-04-2016 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 PP4_RS01795 65cf40b2bc6a4d55c300f8e1f0fdd4c7 210 SUPERFAMILY SSF103025 83 206 1.07E-22 T 22-04-2016 PP4_RS01795 65cf40b2bc6a4d55c300f8e1f0fdd4c7 210 TIGRFAM TIGR01375 soxG: sarcosine oxidase, gamma subunit family 52 203 4.7E-53 T 22-04-2016 IPR006280 Sarcosine oxidase, gamma subunit, heterotetrameric KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 PP4_RS10160 235b3e5c831e0a016ece599f5a0bb168 183 PANTHER PTHR14119 2 175 7.0E-56 T 22-04-2016 PP4_RS10160 235b3e5c831e0a016ece599f5a0bb168 183 SUPERFAMILY SSF52499 1 177 1.01E-49 T 22-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PP4_RS10160 235b3e5c831e0a016ece599f5a0bb168 183 Pfam PF00857 Isochorismatase family 9 155 4.0E-28 T 22-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PP4_RS10160 235b3e5c831e0a016ece599f5a0bb168 183 Gene3D G3DSA:3.40.50.850 1 175 1.7E-55 T 22-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PP4_RS26915 7a4553160a3502ae79bc27f9a8d0075d 497 PANTHER PTHR11699:SF210 1 497 0.0 T 22-04-2016 PP4_RS26915 7a4553160a3502ae79bc27f9a8d0075d 497 Gene3D G3DSA:3.40.309.10 281 468 4.9E-72 T 22-04-2016 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0008152|GO:0016491|GO:0016620|GO:0055114 PP4_RS26915 7a4553160a3502ae79bc27f9a8d0075d 497 PANTHER PTHR11699 1 497 0.0 T 22-04-2016 PP4_RS26915 7a4553160a3502ae79bc27f9a8d0075d 497 ProSitePatterns PS00687 Aldehyde dehydrogenases glutamic acid active site. 266 273 - T 22-04-2016 IPR029510 Aldehyde dehydrogenase, glutamic acid active site GO:0008152|GO:0016491|GO:0055114 PP4_RS26915 7a4553160a3502ae79bc27f9a8d0075d 497 Gene3D G3DSA:3.40.605.10 21 280 2.2E-91 T 22-04-2016 IPR016162 Aldehyde dehydrogenase N-terminal domain GO:0008152|GO:0016491|GO:0055114 PP4_RS26915 7a4553160a3502ae79bc27f9a8d0075d 497 SUPERFAMILY SSF53720 13 496 6.28E-168 T 22-04-2016 IPR016161 Aldehyde/histidinol dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS26915 7a4553160a3502ae79bc27f9a8d0075d 497 ProSitePatterns PS00070 Aldehyde dehydrogenases cysteine active site. 295 306 - T 22-04-2016 IPR016160 Aldehyde dehydrogenase, cysteine active site GO:0008152|GO:0016491|GO:0055114 PP4_RS26915 7a4553160a3502ae79bc27f9a8d0075d 497 Pfam PF00171 Aldehyde dehydrogenase family 29 492 4.8E-172 T 22-04-2016 IPR015590 Aldehyde dehydrogenase domain GO:0008152|GO:0016491|GO:0055114 PP4_RS15420 624d1b0bc681604d947d9096e2e8d2f2 341 Gene3D G3DSA:2.40.110.10 112 181 4.4E-8 T 22-04-2016 PP4_RS15420 624d1b0bc681604d947d9096e2e8d2f2 341 SUPERFAMILY SSF47203 200 314 1.99E-6 T 22-04-2016 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal GO:0016627|GO:0055114 PP4_RS15420 624d1b0bc681604d947d9096e2e8d2f2 341 SUPERFAMILY SSF56645 25 191 3.1E-13 T 22-04-2016 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain GO:0008152|GO:0016627|GO:0055114 PP4_RS15420 624d1b0bc681604d947d9096e2e8d2f2 341 Gene3D G3DSA:1.20.140.10 204 315 4.3E-5 T 22-04-2016 PP4_RS10985 50a8e1a85ff0aa016b4862aaa3500c5d 444 Gene3D G3DSA:3.30.590.10 102 432 1.9E-109 T 22-04-2016 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Reactome: REACT_13 PP4_RS10985 50a8e1a85ff0aa016b4862aaa3500c5d 444 Gene3D G3DSA:3.10.20.70 5 101 1.3E-16 T 22-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS10985 50a8e1a85ff0aa016b4862aaa3500c5d 444 PANTHER PTHR20852:SF7 7 444 2.5E-139 T 22-04-2016 PP4_RS10985 50a8e1a85ff0aa016b4862aaa3500c5d 444 SUPERFAMILY SSF54368 4 98 1.05E-19 T 22-04-2016 IPR008147 Glutamine synthetase, beta-Grasp domain GO:0004356|GO:0006542|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS10985 50a8e1a85ff0aa016b4862aaa3500c5d 444 SUPERFAMILY SSF55931 99 442 2.45E-112 T 22-04-2016 PP4_RS10985 50a8e1a85ff0aa016b4862aaa3500c5d 444 TIGRFAM TIGR03105 gln_synth_III: glutamine synthetase, type III 7 441 1.8E-204 T 22-04-2016 IPR017536 Glutamine synthetase, type III GO:0004356|GO:0006542 PP4_RS10985 50a8e1a85ff0aa016b4862aaa3500c5d 444 Pfam PF00120 Glutamine synthetase, catalytic domain 100 440 3.3E-113 T 22-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS10985 50a8e1a85ff0aa016b4862aaa3500c5d 444 SMART SM01230 99 354 6.6E-111 T 22-04-2016 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 PP4_RS10985 50a8e1a85ff0aa016b4862aaa3500c5d 444 PANTHER PTHR20852 7 444 2.5E-139 T 22-04-2016 PP4_RS01600 8acdd1d37488e976050f8afefb094152 752 PANTHER PTHR30441 155 752 7.8E-178 T 22-04-2016 PP4_RS01600 8acdd1d37488e976050f8afefb094152 752 PANTHER PTHR30441 1 137 7.8E-178 T 22-04-2016 PP4_RS01600 8acdd1d37488e976050f8afefb094152 752 PANTHER PTHR30441:SF4 155 752 7.8E-178 T 22-04-2016 PP4_RS01600 8acdd1d37488e976050f8afefb094152 752 PANTHER PTHR30441:SF4 1 137 7.8E-178 T 22-04-2016 PP4_RS01600 8acdd1d37488e976050f8afefb094152 752 Pfam PF05170 AsmA family 1 634 2.2E-113 T 22-04-2016 IPR007844 AsmA PP4_RS06810 cb835b5dbb0d07d233fb431789edd4b4 229 Gene3D G3DSA:1.10.3720.10 8 220 1.7E-37 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS06810 cb835b5dbb0d07d233fb431789edd4b4 229 PANTHER PTHR30133:SF3 1 229 4.4E-149 T 22-04-2016 PP4_RS06810 cb835b5dbb0d07d233fb431789edd4b4 229 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 8 115 3.6E-19 T 22-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PP4_RS06810 cb835b5dbb0d07d233fb431789edd4b4 229 SUPERFAMILY SSF161098 8 206 8.24E-38 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS06810 cb835b5dbb0d07d233fb431789edd4b4 229 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 32 220 9.4E-20 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS06810 cb835b5dbb0d07d233fb431789edd4b4 229 PANTHER PTHR30133 1 229 4.4E-149 T 22-04-2016 PP4_RS27020 74c7f4b70af13de68c619ff640bfbfcb 126 SUPERFAMILY SSF55298 1 125 1.54E-46 T 22-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like PP4_RS27020 74c7f4b70af13de68c619ff640bfbfcb 126 PANTHER PTHR11803 1 122 2.1E-52 T 22-04-2016 IPR006175 YjgF/YER057c/UK114 family PP4_RS27020 74c7f4b70af13de68c619ff640bfbfcb 126 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 3 124 1.2E-53 T 22-04-2016 IPR006056 RidA family PP4_RS27020 74c7f4b70af13de68c619ff640bfbfcb 126 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 101 119 - T 22-04-2016 IPR019897 RidA, conserved site PP4_RS27020 74c7f4b70af13de68c619ff640bfbfcb 126 Gene3D G3DSA:3.30.1330.40 3 122 2.9E-50 T 22-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like PP4_RS27020 74c7f4b70af13de68c619ff640bfbfcb 126 Pfam PF01042 Endoribonuclease L-PSP 10 124 1.2E-43 T 22-04-2016 IPR006175 YjgF/YER057c/UK114 family PP4_RS21940 4e9a08fe87ed381089ca3833faeaa68a 102 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 3 92 6.7E-28 T 22-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 PP4_RS21940 4e9a08fe87ed381089ca3833faeaa68a 102 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 95 5.3E-35 T 22-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 PP4_RS21940 4e9a08fe87ed381089ca3833faeaa68a 102 Gene3D G3DSA:3.30.160.100 1 93 7.7E-37 T 22-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 PP4_RS21940 4e9a08fe87ed381089ca3833faeaa68a 102 SUPERFAMILY SSF69754 2 94 7.32E-35 T 22-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 PP4_RS21940 4e9a08fe87ed381089ca3833faeaa68a 102 PANTHER PTHR33231 1 91 3.8E-37 T 22-04-2016 PP4_RS12395 becb6b73a29bcd69ea8b6bdcfd102468 447 PANTHER PTHR35566 1 446 3.5E-103 T 22-04-2016 PP4_RS12395 becb6b73a29bcd69ea8b6bdcfd102468 447 TIGRFAM TIGR03353 VI_chp_4: type VI secretion protein, VC_A0114 family 5 446 2.7E-141 T 22-04-2016 IPR010263 Type VI secretion protein, VC_A0114 PP4_RS12395 becb6b73a29bcd69ea8b6bdcfd102468 447 Pfam PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE 19 445 2.1E-136 T 22-04-2016 IPR010263 Type VI secretion protein, VC_A0114 PP4_RS07355 e92189ccd63c33a4bb2aa9ae14854c6e 518 Pfam PF02120 Flagellar hook-length control protein FliK 423 503 1.2E-16 T 22-04-2016 IPR021136 Flagellar hook-length control protein-like, C-terminal PP4_RS12515 e613f352459a0f145cabba28a483026d 141 SUPERFAMILY SSF48452 10 115 2.88E-11 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS12515 e613f352459a0f145cabba28a483026d 141 Gene3D G3DSA:1.25.40.10 15 107 7.2E-10 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS12515 e613f352459a0f145cabba28a483026d 141 Pfam PF13432 Tetratricopeptide repeat 18 85 7.5E-5 T 22-04-2016 PP4_RS07560 217441447d0b1ec5fab1f022df615c7d 171 Gene3D G3DSA:1.10.3330.10 11 171 8.3E-60 T 22-04-2016 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|UniPathway: UPA00394 PP4_RS07560 217441447d0b1ec5fab1f022df615c7d 171 Pfam PF09349 OHCU decarboxylase 11 168 1.2E-45 T 22-04-2016 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|UniPathway: UPA00394 PP4_RS07560 217441447d0b1ec5fab1f022df615c7d 171 TIGRFAM TIGR03164 UHCUDC: OHCU decarboxylase 13 170 5.7E-68 T 22-04-2016 IPR017580 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 1 GO:0019428 KEGG: 00230+4.1.1.97|MetaCyc: PWY-5691|MetaCyc: PWY-7394|UniPathway: UPA00394 PP4_RS07560 217441447d0b1ec5fab1f022df615c7d 171 SUPERFAMILY SSF158694 12 171 5.89E-51 T 22-04-2016 PP4_RS12305 b7fe7b1d9e35999180616047f0ec1e4b 93 Gene3D G3DSA:3.10.50.40 3 93 1.4E-35 T 22-04-2016 PP4_RS12305 b7fe7b1d9e35999180616047f0ec1e4b 93 PANTHER PTHR10657 3 93 8.2E-42 T 22-04-2016 PP4_RS12305 b7fe7b1d9e35999180616047f0ec1e4b 93 Pfam PF13616 PPIC-type PPIASE domain 6 91 1.5E-23 T 22-04-2016 PP4_RS12305 b7fe7b1d9e35999180616047f0ec1e4b 93 SUPERFAMILY SSF54534 3 89 2.81E-29 T 22-04-2016 PP4_RS00055 93d09d45634be7461e61ff8594fde16c 223 Gene3D G3DSA:1.10.260.40 99 147 3.3E-6 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS22955 deed7ae0da8e012d93e04826b519c795 365 PANTHER PTHR21716 17 365 2.7E-65 T 22-04-2016 IPR002549 Transmembrane protein TqsA-like PP4_RS22955 deed7ae0da8e012d93e04826b519c795 365 Pfam PF01594 Domain of unknown function DUF20 25 348 1.9E-30 T 22-04-2016 IPR002549 Transmembrane protein TqsA-like PP4_RS22955 deed7ae0da8e012d93e04826b519c795 365 PANTHER PTHR21716:SF20 17 365 2.7E-65 T 22-04-2016 PP4_RS06150 79420436998dbfeea277d2b09c691906 776 SUPERFAMILY SSF50692 645 765 4.07E-15 T 22-04-2016 IPR009010 Aspartate decarboxylase-like domain PP4_RS06150 79420436998dbfeea277d2b09c691906 776 PIRSF PIRSF000144 1 767 0.0 T 22-04-2016 IPR010046 Oxidoreductase alpha (molybdopterin) subunit GO:0008863|GO:0030151|GO:0051539 PP4_RS06150 79420436998dbfeea277d2b09c691906 776 Pfam PF00384 Molybdopterin oxidoreductase 110 251 2.6E-11 T 22-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 PP4_RS06150 79420436998dbfeea277d2b09c691906 776 Pfam PF00384 Molybdopterin oxidoreductase 313 491 4.8E-11 T 22-04-2016 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 PP4_RS06150 79420436998dbfeea277d2b09c691906 776 Pfam PF01568 Molydopterin dinucleotide binding domain 649 736 7.0E-7 T 22-04-2016 IPR006657 Molybdopterin dinucleotide-binding domain GO:0016491|GO:0030151|GO:0055114 PP4_RS06150 79420436998dbfeea277d2b09c691906 776 PANTHER PTHR11615 50 253 8.1E-291 T 22-04-2016 PP4_RS06150 79420436998dbfeea277d2b09c691906 776 PANTHER PTHR11615 272 771 8.1E-291 T 22-04-2016 PP4_RS06150 79420436998dbfeea277d2b09c691906 776 SUPERFAMILY SSF53706 48 632 3.66E-144 T 22-04-2016 PP4_RS06150 79420436998dbfeea277d2b09c691906 776 Gene3D G3DSA:3.40.228.10 184 394 5.0E-54 T 22-04-2016 PP4_RS06150 79420436998dbfeea277d2b09c691906 776 Gene3D G3DSA:3.40.50.740 110 183 3.8E-55 T 22-04-2016 PP4_RS06150 79420436998dbfeea277d2b09c691906 776 Gene3D G3DSA:3.40.50.740 395 627 3.8E-55 T 22-04-2016 PP4_RS06150 79420436998dbfeea277d2b09c691906 776 Gene3D G3DSA:2.40.40.20 644 765 1.5E-9 T 22-04-2016 PP4_RS06150 79420436998dbfeea277d2b09c691906 776 PANTHER PTHR11615:SF114 50 253 8.1E-291 T 22-04-2016 PP4_RS06150 79420436998dbfeea277d2b09c691906 776 PANTHER PTHR11615:SF114 272 771 8.1E-291 T 22-04-2016 PP4_RS06150 79420436998dbfeea277d2b09c691906 776 TIGRFAM TIGR01701 Fdhalpha-like: oxidoreductase alpha (molybdopterin) subunit 14 761 8.3E-285 T 22-04-2016 IPR010046 Oxidoreductase alpha (molybdopterin) subunit GO:0008863|GO:0030151|GO:0051539 PP4_RS22970 4ddb65767526357fc5e29334306cf8e9 206 Pfam PF00857 Isochorismatase family 14 165 2.9E-22 T 22-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PP4_RS22970 4ddb65767526357fc5e29334306cf8e9 206 PANTHER PTHR14119 4 202 1.3E-120 T 22-04-2016 PP4_RS22970 4ddb65767526357fc5e29334306cf8e9 206 Gene3D G3DSA:3.40.50.850 6 203 1.5E-48 T 22-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PP4_RS22970 4ddb65767526357fc5e29334306cf8e9 206 SUPERFAMILY SSF52499 5 202 1.83E-53 T 22-04-2016 IPR000868 Isochorismatase-like GO:0003824|GO:0008152 PP4_RS22970 4ddb65767526357fc5e29334306cf8e9 206 PANTHER PTHR14119:SF11 4 202 1.3E-120 T 22-04-2016 PP4_RS17520 de8eebcd4c9b4d6cb66f5c5bd37fbff1 326 SUPERFAMILY SSF56059 232 282 3.92E-18 T 22-04-2016 PP4_RS17520 de8eebcd4c9b4d6cb66f5c5bd37fbff1 326 SUPERFAMILY SSF56059 41 202 3.92E-18 T 22-04-2016 PP4_RS17520 de8eebcd4c9b4d6cb66f5c5bd37fbff1 326 Pfam PF14397 Sugar-transfer associated ATP-grasp 21 294 1.7E-102 T 22-04-2016 PP4_RS17520 de8eebcd4c9b4d6cb66f5c5bd37fbff1 326 Gene3D G3DSA:3.30.470.20 40 101 9.2E-4 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PP4_RS17520 de8eebcd4c9b4d6cb66f5c5bd37fbff1 326 TIGRFAM TIGR02291 rimK_rel_E_lig: alpha-L-glutamate ligase homolog 6 324 4.7E-171 T 22-04-2016 IPR011758 Alpha-L-glutamate ligase-related protein PP4_RS17520 de8eebcd4c9b4d6cb66f5c5bd37fbff1 326 Gene3D G3DSA:3.30.470.20 238 286 7.9E-5 T 22-04-2016 IPR013816 ATP-grasp fold, subdomain 2 GO:0005524 PP4_RS15050 39de8211d9e9320f3e278b004959d1c1 433 PANTHER PTHR11662:SF3 1 433 5.6E-118 T 22-04-2016 PP4_RS15050 39de8211d9e9320f3e278b004959d1c1 433 PANTHER PTHR11662 1 433 5.6E-118 T 22-04-2016 PP4_RS15050 39de8211d9e9320f3e278b004959d1c1 433 Gene3D G3DSA:1.20.1250.20 248 428 1.6E-16 T 22-04-2016 PP4_RS15050 39de8211d9e9320f3e278b004959d1c1 433 Gene3D G3DSA:1.20.1250.20 26 222 5.0E-40 T 22-04-2016 PP4_RS15050 39de8211d9e9320f3e278b004959d1c1 433 Pfam PF07690 Major Facilitator Superfamily 32 392 4.3E-35 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS15050 39de8211d9e9320f3e278b004959d1c1 433 SUPERFAMILY SSF103473 16 427 1.57E-74 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS22165 f0c11a224c9b8cdb5071eb97baa81136 237 SUPERFAMILY SSF161098 38 220 4.19E-36 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS22165 f0c11a224c9b8cdb5071eb97baa81136 237 Gene3D G3DSA:1.10.3720.10 40 229 7.7E-28 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS22165 f0c11a224c9b8cdb5071eb97baa81136 237 PANTHER PTHR30151 25 235 2.0E-76 T 22-04-2016 PP4_RS22165 f0c11a224c9b8cdb5071eb97baa81136 237 PANTHER PTHR30151:SF23 25 235 2.0E-76 T 22-04-2016 PP4_RS22165 f0c11a224c9b8cdb5071eb97baa81136 237 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 60 232 1.9E-22 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS12550 c234fc3df54693c710ec0d4f3af8882e 484 PANTHER PTHR11895:SF76 6 478 1.2E-211 T 22-04-2016 PP4_RS12550 c234fc3df54693c710ec0d4f3af8882e 484 SUPERFAMILY SSF75304 8 479 8.5E-123 T 22-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PP4_RS12550 c234fc3df54693c710ec0d4f3af8882e 484 PANTHER PTHR11895 6 478 1.2E-211 T 22-04-2016 IPR000120 Amidase GO:0016884 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PP4_RS12550 c234fc3df54693c710ec0d4f3af8882e 484 Pfam PF01425 Amidase 30 461 2.2E-89 T 22-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PP4_RS12550 c234fc3df54693c710ec0d4f3af8882e 484 Gene3D G3DSA:3.90.1300.10 8 479 4.4E-121 T 22-04-2016 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 PP4_RS08410 01c08c0d4ba56fcff61400bcc5321657 165 PANTHER PTHR12418 54 165 4.6E-14 T 22-04-2016 PP4_RS08410 01c08c0d4ba56fcff61400bcc5321657 165 Pfam PF03061 Thioesterase superfamily 75 142 3.2E-4 T 22-04-2016 IPR006683 Thioesterase domain PP4_RS08410 01c08c0d4ba56fcff61400bcc5321657 165 PANTHER PTHR12418:SF16 54 165 4.6E-14 T 22-04-2016 PP4_RS08410 01c08c0d4ba56fcff61400bcc5321657 165 SUPERFAMILY SSF54637 16 151 1.7E-26 T 22-04-2016 IPR029069 HotDog domain PP4_RS08410 01c08c0d4ba56fcff61400bcc5321657 165 Gene3D G3DSA:3.10.129.10 7 158 2.7E-43 T 22-04-2016 IPR029069 HotDog domain PP4_RS17825 916e0670a8d783cb150ef12dd647dd20 112 Pfam PF11804 Protein of unknown function (DUF3325) 8 105 2.5E-30 T 22-04-2016 IPR021762 Protein of unknown function DUF3325 PP4_RS14055 c826bbd81c4891711b3bd9d0a4005c4c 481 Pfam PF07012 Curlin associated repeat 251 285 1.5E-4 T 22-04-2016 IPR009742 Curlin associated GO:0007155|GO:0009289 PP4_RS14055 c826bbd81c4891711b3bd9d0a4005c4c 481 Pfam PF07012 Curlin associated repeat 404 437 5.0E-7 T 22-04-2016 IPR009742 Curlin associated GO:0007155|GO:0009289 PP4_RS19060 282ad5e167bf25aa0f3044fbdf03bda8 417 PANTHER PTHR34596 5 417 4.9E-143 T 22-04-2016 PP4_RS19060 282ad5e167bf25aa0f3044fbdf03bda8 417 Pfam PF03573 outer membrane porin, OprD family 24 415 4.2E-138 T 22-04-2016 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 PP4_RS19060 282ad5e167bf25aa0f3044fbdf03bda8 417 Gene3D G3DSA:2.40.160.10 29 417 2.3E-137 T 22-04-2016 IPR023614 Porin domain PP4_RS27090 f9813665f9d6a656384538c49c3cf283 296 TIGRFAM TIGR01474 ubiA_proteo: 4-hydroxybenzoate polyprenyl transferase 18 293 2.8E-101 T 22-04-2016 IPR006370 4-hydroxybenzoate polyprenyltransferase GO:0004659|GO:0016021 UniPathway: UPA00232 PP4_RS27090 f9813665f9d6a656384538c49c3cf283 296 Pfam PF01040 UbiA prenyltransferase family 34 278 2.5E-64 T 22-04-2016 IPR000537 UbiA prenyltransferase family GO:0004659|GO:0016021 PP4_RS27090 f9813665f9d6a656384538c49c3cf283 296 Hamap MF_01635 4-hydroxybenzoate octaprenyltransferase [ubiA]. 11 294 29.101 T 22-04-2016 IPR031103 4-hydroxybenzoate octaprenyltransferase GO:0004659|GO:0006744|GO:0016021 UniPathway: UPA00232 PP4_RS27090 f9813665f9d6a656384538c49c3cf283 296 PANTHER PTHR11048:SF7 7 296 8.5E-90 T 22-04-2016 PP4_RS27090 f9813665f9d6a656384538c49c3cf283 296 PANTHER PTHR11048 7 296 8.5E-90 T 22-04-2016 PP4_RS21900 53553b55c31ac750058d0bf291bd5dbf 265 TIGRFAM TIGR00056 TIGR00056: ABC transport permease subunit 12 262 3.0E-92 T 22-04-2016 IPR003453 ABC transport permease subunit MlaE, Proteobacteria PP4_RS21900 53553b55c31ac750058d0bf291bd5dbf 265 PANTHER PTHR30188:SF4 2 263 6.2E-118 T 22-04-2016 PP4_RS21900 53553b55c31ac750058d0bf291bd5dbf 265 PANTHER PTHR30188 2 263 6.2E-118 T 22-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 PP4_RS21900 53553b55c31ac750058d0bf291bd5dbf 265 Pfam PF02405 Permease MlaE 49 260 1.4E-76 T 22-04-2016 IPR030802 ABC transporter permease MalE GO:0006810|GO:0043190 PP4_RS21410 1d91eb9ca40dbf1a41e52e99eacb2f6d 269 Pfam PF01578 Cytochrome C assembly protein 41 266 6.1E-38 T 22-04-2016 IPR002541 Cytochrome c assembly protein GO:0017004|GO:0020037 PP4_RS21410 1d91eb9ca40dbf1a41e52e99eacb2f6d 269 PANTHER PTHR38034 7 268 2.1E-82 T 22-04-2016 PP4_RS20085 40973d2cb705ce0620b7f3a06e34702b 235 Gene3D G3DSA:2.160.10.10 83 231 6.4E-31 T 22-04-2016 PP4_RS20085 40973d2cb705ce0620b7f3a06e34702b 235 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 174 207 8.0E-8 T 22-04-2016 IPR001451 Hexapeptide repeat PP4_RS20085 40973d2cb705ce0620b7f3a06e34702b 235 SUPERFAMILY SSF51161 108 228 1.25E-27 T 22-04-2016 IPR011004 Trimeric LpxA-like PP4_RS20085 40973d2cb705ce0620b7f3a06e34702b 235 PANTHER PTHR23416:SF53 86 232 1.4E-17 T 22-04-2016 PP4_RS20085 40973d2cb705ce0620b7f3a06e34702b 235 PANTHER PTHR23416 86 232 1.4E-17 T 22-04-2016 PP4_RS22250 68a714f0406564281405e4365a8de927 380 PANTHER PTHR32303 29 367 9.5E-77 T 22-04-2016 PP4_RS22250 68a714f0406564281405e4365a8de927 380 SUPERFAMILY SSF50998 31 368 1.57E-73 T 22-04-2016 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily PP4_RS22250 68a714f0406564281405e4365a8de927 380 TIGRFAM TIGR03300 assembly_YfgL: outer membrane assembly lipoprotein YfgL 5 377 5.1E-135 T 22-04-2016 IPR017687 Outer membrane protein assembly factor BamB PP4_RS22250 68a714f0406564281405e4365a8de927 380 Pfam PF13360 PQQ-like domain 75 305 1.1E-48 T 22-04-2016 IPR002372 Pyrrolo-quinoline quinone repeat PP4_RS22250 68a714f0406564281405e4365a8de927 380 SMART SM00564 101 133 0.015 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS22250 68a714f0406564281405e4365a8de927 380 SMART SM00564 276 307 250.0 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS22250 68a714f0406564281405e4365a8de927 380 SMART SM00564 142 173 0.7 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS22250 68a714f0406564281405e4365a8de927 380 SMART SM00564 237 269 0.0017 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS22250 68a714f0406564281405e4365a8de927 380 SMART SM00564 62 93 4.0E-5 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS22250 68a714f0406564281405e4365a8de927 380 SMART SM00564 186 218 230.0 T 22-04-2016 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat PP4_RS22250 68a714f0406564281405e4365a8de927 380 Gene3D G3DSA:2.140.10.10 5 378 2.0E-66 T 22-04-2016 IPR027295 Quinoprotein alcohol dehydrogenase-like domain PP4_RS22250 68a714f0406564281405e4365a8de927 380 PANTHER PTHR32303:SF8 29 367 9.5E-77 T 22-04-2016 PP4_RS22250 68a714f0406564281405e4365a8de927 380 Hamap MF_00923 Outer membrane protein assembly factor BamB [bamB]. 1 379 38.544 T 22-04-2016 IPR017687 Outer membrane protein assembly factor BamB PP4_RS23590 ee757bdb43276ea8778f7c9a4b9c270d 159 Gene3D G3DSA:3.30.70.560 4 152 1.0E-51 T 22-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 PP4_RS23590 ee757bdb43276ea8778f7c9a4b9c270d 159 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 6 133 8.3E-35 T 22-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 PP4_RS23590 ee757bdb43276ea8778f7c9a4b9c270d 159 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 88 99 - T 22-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 PP4_RS23590 ee757bdb43276ea8778f7c9a4b9c270d 159 SUPERFAMILY SSF55083 3 153 1.96E-50 T 22-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 PP4_RS23590 ee757bdb43276ea8778f7c9a4b9c270d 159 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 5 133 1.7E-41 T 22-04-2016 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|UniPathway: UPA00077 PP4_RS23590 ee757bdb43276ea8778f7c9a4b9c270d 159 PANTHER PTHR20941 3 158 8.6E-63 T 22-04-2016 PP4_RS26240 9de5e23154460e50566e262046baf794 260 PANTHER PTHR30269:SF18 1 260 3.9E-100 T 22-04-2016 PP4_RS26240 9de5e23154460e50566e262046baf794 260 Pfam PF01925 Sulfite exporter TauE/SafE 7 257 3.1E-56 T 22-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 PP4_RS26240 9de5e23154460e50566e262046baf794 260 PANTHER PTHR30269 1 260 3.9E-100 T 22-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 PP4_RS12660 e72971e3bad19f8f7cd9e53001294a40 268 Gene3D G3DSA:3.40.50.300 88 265 2.0E-21 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS12660 e72971e3bad19f8f7cd9e53001294a40 268 PANTHER PTHR32309:SF14 71 262 1.3E-26 T 22-04-2016 PP4_RS12660 e72971e3bad19f8f7cd9e53001294a40 268 Pfam PF13614 AAA domain 99 238 4.0E-8 T 22-04-2016 IPR025669 AAA domain PP4_RS12660 e72971e3bad19f8f7cd9e53001294a40 268 PANTHER PTHR32309 71 262 1.3E-26 T 22-04-2016 PP4_RS12660 e72971e3bad19f8f7cd9e53001294a40 268 SUPERFAMILY SSF52540 88 266 2.1E-25 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS22410 57100e95ab00ccf0acea3c5f57cac189 97 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 41 93 7.3E-6 T 22-04-2016 IPR009241 Toxin HigB-like PP4_RS22410 57100e95ab00ccf0acea3c5f57cac189 97 PANTHER PTHR41791 1 96 2.4E-20 T 22-04-2016 PP4_RS22410 57100e95ab00ccf0acea3c5f57cac189 97 PANTHER PTHR41791:SF1 1 96 2.4E-20 T 22-04-2016 PP4_RS22410 57100e95ab00ccf0acea3c5f57cac189 97 PIRSF PIRSF028744 1 97 1.8E-31 T 22-04-2016 IPR014056 Addiction module killer protein, predicted PP4_RS22410 57100e95ab00ccf0acea3c5f57cac189 97 TIGRFAM TIGR02683 upstrm_HI1419: putative addiction module killer protein 4 96 8.2E-31 T 22-04-2016 IPR014056 Addiction module killer protein, predicted PP4_RS24415 28c946a4ea2ac4e86c4788a2dfce1bc9 67 Pfam PF10981 Protein of unknown function (DUF2788) 14 63 3.1E-22 T 22-04-2016 IPR021249 Protein of unknown function DUF2788 PP4_RS01435 0c2ebec5fc898eb6ea0bfe419c03ef0f 188 PANTHER PTHR11839:SF12 2 180 1.9E-84 T 22-04-2016 PP4_RS01435 0c2ebec5fc898eb6ea0bfe419c03ef0f 188 PANTHER PTHR11839 2 180 1.9E-84 T 22-04-2016 PP4_RS01435 0c2ebec5fc898eb6ea0bfe419c03ef0f 188 ProSitePatterns PS00893 Nudix box signature. 80 101 - T 22-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 PP4_RS01435 0c2ebec5fc898eb6ea0bfe419c03ef0f 188 Pfam PF00293 NUDIX domain 48 155 5.4E-13 T 22-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 PP4_RS01435 0c2ebec5fc898eb6ea0bfe419c03ef0f 188 SUPERFAMILY SSF55811 5 178 3.11E-36 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PP4_RS01435 0c2ebec5fc898eb6ea0bfe419c03ef0f 188 Gene3D G3DSA:3.90.79.10 4 178 6.5E-39 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PP4_RS03820 3a49a111aa161b7ac35d5bc6ec167ddb 96 Pfam PF12021 Protein of unknown function (DUF3509) 5 89 4.6E-32 T 22-04-2016 IPR021898 Protein of unknown function DUF3509 PP4_RS01850 e59e9d8aeb7929f9b1c948327430cc9a 442 PIRSF PIRSF004548 1 442 3.5E-159 T 22-04-2016 IPR010364 Uncharacterised protein family, inner membrane CreD PP4_RS01850 e59e9d8aeb7929f9b1c948327430cc9a 442 PANTHER PTHR30092 4 441 2.0E-163 T 22-04-2016 PP4_RS01850 e59e9d8aeb7929f9b1c948327430cc9a 442 Pfam PF06123 Inner membrane protein CreD 5 435 8.0E-161 T 22-04-2016 IPR010364 Uncharacterised protein family, inner membrane CreD PP4_RS08350 e09ef3a69895c68e158eb3a4dcf22df4 137 PANTHER PTHR11058:SF5 1 127 7.3E-65 T 22-04-2016 PP4_RS08350 e09ef3a69895c68e158eb3a4dcf22df4 137 PANTHER PTHR11058 1 127 7.3E-65 T 22-04-2016 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 PP4_RS08350 e09ef3a69895c68e158eb3a4dcf22df4 137 Pfam PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 26 123 5.2E-34 T 22-04-2016 IPR000440 NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 GO:0008137|GO:0055114 PP4_RS08350 e09ef3a69895c68e158eb3a4dcf22df4 137 Hamap MF_01394 NAD(P)H-quinone oxidoreductase subunit 3, chloroplastic [ndhC]. 7 124 20.541 T 22-04-2016 IPR023043 NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastid GO:0016651|GO:0055114 PP4_RS12040 6a4f499b30fd36691a3db8dca612ea7b 177 Gene3D G3DSA:3.40.50.2300 4 125 6.7E-31 T 22-04-2016 PP4_RS12040 6a4f499b30fd36691a3db8dca612ea7b 177 PANTHER PTHR26402 3 113 4.4E-31 T 22-04-2016 PP4_RS12040 6a4f499b30fd36691a3db8dca612ea7b 177 Pfam PF00072 Response regulator receiver domain 5 113 1.8E-23 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS12040 6a4f499b30fd36691a3db8dca612ea7b 177 SMART SM00448 3 113 2.2E-30 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS12040 6a4f499b30fd36691a3db8dca612ea7b 177 SUPERFAMILY SSF52172 4 125 3.98E-33 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS06560 96a6aea2a8914068f211e892f4d02842 291 PANTHER PTHR22911 3 285 2.5E-60 T 22-04-2016 PP4_RS06560 96a6aea2a8914068f211e892f4d02842 291 PANTHER PTHR22911:SF27 3 285 2.5E-60 T 22-04-2016 PP4_RS06560 96a6aea2a8914068f211e892f4d02842 291 Pfam PF00892 EamA-like transporter family 138 277 6.0E-9 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS06560 96a6aea2a8914068f211e892f4d02842 291 Pfam PF00892 EamA-like transporter family 4 128 2.9E-8 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS06560 96a6aea2a8914068f211e892f4d02842 291 SUPERFAMILY SSF103481 179 280 3.66E-6 T 22-04-2016 PP4_RS06560 96a6aea2a8914068f211e892f4d02842 291 TIGRFAM TIGR00950 2A78: carboxylate/amino acid/amine transporter 12 274 3.8E-76 T 22-04-2016 IPR004779 Carboxylate/Amino Acid/Amine Transporter GO:0016021 PP4_RS06560 96a6aea2a8914068f211e892f4d02842 291 SUPERFAMILY SSF103481 35 131 1.96E-9 T 22-04-2016 PP4_RS06980 28887407651801f85ba2377a4bdca0db 446 Gene3D G3DSA:1.20.1250.20 5 181 2.8E-12 T 22-04-2016 PP4_RS06980 28887407651801f85ba2377a4bdca0db 446 Gene3D G3DSA:1.20.1250.20 200 374 5.0E-21 T 22-04-2016 PP4_RS06980 28887407651801f85ba2377a4bdca0db 446 PANTHER PTHR23521:SF2 2 416 4.0E-179 T 22-04-2016 PP4_RS06980 28887407651801f85ba2377a4bdca0db 446 PANTHER PTHR23521 2 416 4.0E-179 T 22-04-2016 PP4_RS06980 28887407651801f85ba2377a4bdca0db 446 SUPERFAMILY SSF103473 5 372 4.45E-43 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS06980 28887407651801f85ba2377a4bdca0db 446 Pfam PF07690 Major Facilitator Superfamily 11 285 1.3E-16 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS01060 368d9b0ce3e07eb840a345084afcaeab 516 SUPERFAMILY SSF56436 103 290 3.77E-30 T 22-04-2016 IPR016187 C-type lectin fold PP4_RS01060 368d9b0ce3e07eb840a345084afcaeab 516 Pfam PF03781 Sulfatase-modifying factor enzyme 1 102 306 4.6E-31 T 22-04-2016 IPR005532 Sulfatase-modifying factor enzyme PP4_RS01060 368d9b0ce3e07eb840a345084afcaeab 516 PANTHER PTHR23150:SF19 172 343 7.1E-20 T 22-04-2016 PP4_RS01060 368d9b0ce3e07eb840a345084afcaeab 516 PANTHER PTHR23150:SF19 127 153 7.1E-20 T 22-04-2016 PP4_RS01060 368d9b0ce3e07eb840a345084afcaeab 516 Gene3D G3DSA:3.90.1580.10 104 313 6.6E-31 T 22-04-2016 IPR005532 Sulfatase-modifying factor enzyme PP4_RS01060 368d9b0ce3e07eb840a345084afcaeab 516 PANTHER PTHR23150 127 153 7.1E-20 T 22-04-2016 PP4_RS01060 368d9b0ce3e07eb840a345084afcaeab 516 PANTHER PTHR23150 172 343 7.1E-20 T 22-04-2016 PP4_RS17075 1f30b87e99856f5eeff1c03505e6f67b 258 SUPERFAMILY SSF52540 1 256 3.33E-49 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS17075 1f30b87e99856f5eeff1c03505e6f67b 258 PANTHER PTHR13696:SF66 4 256 1.1E-85 T 22-04-2016 PP4_RS17075 1f30b87e99856f5eeff1c03505e6f67b 258 PANTHER PTHR13696 4 256 1.1E-85 T 22-04-2016 PP4_RS17075 1f30b87e99856f5eeff1c03505e6f67b 258 Gene3D G3DSA:3.40.50.300 4 254 2.5E-51 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS17075 1f30b87e99856f5eeff1c03505e6f67b 258 Pfam PF13614 AAA domain 5 184 1.3E-36 T 22-04-2016 IPR025669 AAA domain PP4_RS11435 43c7979aeac1a260a8236657bab15654 275 PANTHER PTHR35563:SF1 3 275 4.1E-34 T 22-04-2016 PP4_RS11435 43c7979aeac1a260a8236657bab15654 275 Pfam PF04909 Amidohydrolase 9 274 1.1E-28 T 22-04-2016 IPR006680 Amidohydrolase-related GO:0016787 PP4_RS11435 43c7979aeac1a260a8236657bab15654 275 Gene3D G3DSA:3.20.20.140 6 274 5.8E-73 T 22-04-2016 PP4_RS11435 43c7979aeac1a260a8236657bab15654 275 SUPERFAMILY SSF51556 8 274 3.35E-63 T 22-04-2016 IPR032466 Metal-dependent hydrolase PP4_RS11435 43c7979aeac1a260a8236657bab15654 275 PANTHER PTHR35563 3 275 4.1E-34 T 22-04-2016 PP4_RS13990 9cfe5e243bb796b47d28b64cdc77d304 594 SUPERFAMILY SSF51905 524 585 6.4E-49 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS13990 9cfe5e243bb796b47d28b64cdc77d304 594 SUPERFAMILY SSF51905 7 344 6.4E-49 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS13990 9cfe5e243bb796b47d28b64cdc77d304 594 PANTHER PTHR11552:SF139 8 589 2.8E-169 T 22-04-2016 PP4_RS13990 9cfe5e243bb796b47d28b64cdc77d304 594 Pfam PF00732 GMC oxidoreductase 207 349 1.6E-10 T 22-04-2016 IPR000172 Glucose-methanol-choline oxidoreductase, N-terminal GO:0016614|GO:0050660|GO:0055114 PP4_RS13990 9cfe5e243bb796b47d28b64cdc77d304 594 Pfam PF05199 GMC oxidoreductase 449 573 1.6E-19 T 22-04-2016 IPR007867 Glucose-methanol-choline oxidoreductase, C-terminal GO:0016614|GO:0055114 PP4_RS13990 9cfe5e243bb796b47d28b64cdc77d304 594 PANTHER PTHR11552 8 589 2.8E-169 T 22-04-2016 PP4_RS13990 9cfe5e243bb796b47d28b64cdc77d304 594 Gene3D G3DSA:3.50.50.60 246 352 1.7E-57 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS13990 9cfe5e243bb796b47d28b64cdc77d304 594 Gene3D G3DSA:3.50.50.60 6 158 1.7E-57 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS13990 9cfe5e243bb796b47d28b64cdc77d304 594 Gene3D G3DSA:3.50.50.60 515 583 1.7E-57 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS13990 9cfe5e243bb796b47d28b64cdc77d304 594 Gene3D G3DSA:3.50.50.60 457 470 1.7E-57 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS13990 9cfe5e243bb796b47d28b64cdc77d304 594 SUPERFAMILY SSF54373 433 496 6.28E-9 T 22-04-2016 PP4_RS06450 6a1d7cbaa258c0ec0cd0628db1372b1e 110 SUPERFAMILY SSF47598 70 107 2.08E-5 T 22-04-2016 IPR010985 Ribbon-helix-helix GO:0006355 PP4_RS06450 6a1d7cbaa258c0ec0cd0628db1372b1e 110 SUPERFAMILY SSF143100 2 75 3.4E-15 T 22-04-2016 PP4_RS06450 6a1d7cbaa258c0ec0cd0628db1372b1e 110 Pfam PF05534 HicB family 54 102 3.4E-19 T 22-04-2016 IPR008651 Uncharacterised protein family HicB PP4_RS00745 e0454111df86979a6cfda6967b461513 373 Pfam PF05222 Alanine dehydrogenase/PNT, N-terminal domain 4 136 7.5E-41 T 22-04-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal PP4_RS00745 e0454111df86979a6cfda6967b461513 373 Gene3D G3DSA:3.40.50.1770 187 368 5.3E-41 T 22-04-2016 PP4_RS00745 e0454111df86979a6cfda6967b461513 373 Pfam PF01262 Alanine dehydrogenase/PNT, C-terminal domain 140 370 6.0E-74 T 22-04-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain PP4_RS00745 e0454111df86979a6cfda6967b461513 373 Gene3D G3DSA:3.40.50.1770 2 186 6.7E-60 T 22-04-2016 PP4_RS00745 e0454111df86979a6cfda6967b461513 373 SMART SM01003 4 136 9.2E-64 T 22-04-2016 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal PP4_RS00745 e0454111df86979a6cfda6967b461513 373 SMART SM01002 145 314 1.7E-85 T 22-04-2016 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain PP4_RS00745 e0454111df86979a6cfda6967b461513 373 SUPERFAMILY SSF51735 136 319 6.35E-39 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS00745 e0454111df86979a6cfda6967b461513 373 PANTHER PTHR10160 3 371 1.7E-170 T 22-04-2016 PP4_RS00745 e0454111df86979a6cfda6967b461513 373 SUPERFAMILY SSF52283 2 167 2.38E-48 T 22-04-2016 PP4_RS16130 33aa179c084e96604e49a20217a17fd9 274 Pfam PF12833 Helix-turn-helix domain 193 269 1.1E-16 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS16130 33aa179c084e96604e49a20217a17fd9 274 Gene3D G3DSA:1.10.10.60 169 222 2.0E-9 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS16130 33aa179c084e96604e49a20217a17fd9 274 SUPERFAMILY SSF46689 221 270 1.3E-7 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS16130 33aa179c084e96604e49a20217a17fd9 274 PANTHER PTHR11019:SF111 12 274 7.6E-115 T 22-04-2016 PP4_RS16130 33aa179c084e96604e49a20217a17fd9 274 Gene3D G3DSA:1.10.10.60 234 272 2.2E-8 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS16130 33aa179c084e96604e49a20217a17fd9 274 Pfam PF02311 AraC-like ligand binding domain 21 150 5.4E-19 T 22-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PP4_RS16130 33aa179c084e96604e49a20217a17fd9 274 SMART SM00342 185 267 2.5E-14 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS16130 33aa179c084e96604e49a20217a17fd9 274 Gene3D G3DSA:2.60.120.280 23 113 1.3E-9 T 22-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PP4_RS16130 33aa179c084e96604e49a20217a17fd9 274 SUPERFAMILY SSF46689 171 218 1.43E-5 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS16130 33aa179c084e96604e49a20217a17fd9 274 SUPERFAMILY SSF51215 27 137 3.14E-17 T 22-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PP4_RS16130 33aa179c084e96604e49a20217a17fd9 274 PANTHER PTHR11019 12 274 7.6E-115 T 22-04-2016 PP4_RS02550 59d7f51773b297f486baf6892060f7e7 88 Gene3D G3DSA:2.40.50.140 9 85 5.5E-36 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS02550 59d7f51773b297f486baf6892060f7e7 88 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 9 79 1.8E-37 T 22-04-2016 IPR019984 Ribosomal protein S17, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02550 59d7f51773b297f486baf6892060f7e7 88 SUPERFAMILY SSF50249 9 85 7.71E-33 T 22-04-2016 IPR012340 Nucleic acid-binding, OB-fold PP4_RS02550 59d7f51773b297f486baf6892060f7e7 88 PANTHER PTHR10744 9 87 9.1E-43 T 22-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02550 59d7f51773b297f486baf6892060f7e7 88 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 9 76 2.0E-32 T 22-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02550 59d7f51773b297f486baf6892060f7e7 88 PRINTS PR00973 Ribosomal protein S17 family signature 59 69 2.8E-13 T 22-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02550 59d7f51773b297f486baf6892060f7e7 88 PRINTS PR00973 Ribosomal protein S17 family signature 27 50 2.8E-13 T 22-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02550 59d7f51773b297f486baf6892060f7e7 88 PRINTS PR00973 Ribosomal protein S17 family signature 69 76 2.8E-13 T 22-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02550 59d7f51773b297f486baf6892060f7e7 88 Pfam PF00366 Ribosomal protein S17 13 80 1.3E-33 T 22-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS02550 59d7f51773b297f486baf6892060f7e7 88 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 6 84 26.38 T 22-04-2016 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 PP4_RS09705 a902a8a472a6c19bc6723b3daa1d126b 333 PANTHER PTHR12304:SF19 9 333 9.5E-149 T 22-04-2016 PP4_RS09705 a902a8a472a6c19bc6723b3daa1d126b 333 Gene3D G3DSA:3.90.245.10 22 332 2.4E-96 T 22-04-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain PP4_RS09705 a902a8a472a6c19bc6723b3daa1d126b 333 SUPERFAMILY SSF53590 22 331 7.59E-93 T 22-04-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain PP4_RS09705 a902a8a472a6c19bc6723b3daa1d126b 333 ProSitePatterns PS01247 Inosine-uridine preferring nucleoside hydrolase family signature. 28 38 - T 22-04-2016 IPR015910 Inosine/uridine-preferring nucleoside hydrolase, conserved site GO:0016799 PP4_RS09705 a902a8a472a6c19bc6723b3daa1d126b 333 PANTHER PTHR12304 9 333 9.5E-149 T 22-04-2016 IPR023186 Inosine/uridine-preferring nucleoside hydrolase PP4_RS09705 a902a8a472a6c19bc6723b3daa1d126b 333 Pfam PF01156 Inosine-uridine preferring nucleoside hydrolase 25 309 1.3E-66 T 22-04-2016 IPR001910 Inosine/uridine-preferring nucleoside hydrolase domain PP4_RS01315 1f7fbc022915e8e83b5367c7ae0daf5c 382 PANTHER PTHR30011 1 380 5.1E-220 T 22-04-2016 PP4_RS01315 1f7fbc022915e8e83b5367c7ae0daf5c 382 Pfam PF00296 Luciferase-like monooxygenase 4 325 5.4E-85 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS01315 1f7fbc022915e8e83b5367c7ae0daf5c 382 SUPERFAMILY SSF51679 3 349 1.83E-97 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS01315 1f7fbc022915e8e83b5367c7ae0daf5c 382 PANTHER PTHR30011:SF1 1 380 5.1E-220 T 22-04-2016 PP4_RS01315 1f7fbc022915e8e83b5367c7ae0daf5c 382 Hamap MF_01229 Alkanesulfonate monooxygenase [ssuD]. 4 379 70.903 T 22-04-2016 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 PP4_RS01315 1f7fbc022915e8e83b5367c7ae0daf5c 382 TIGRFAM TIGR03565 alk_sulf_monoox: alkanesulfonate monooxygenase, FMNH(2)-dependent 4 349 1.0E-192 T 22-04-2016 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent GO:0008726|GO:0055114 KEGG: 00920+1.14.14.5 PP4_RS01315 1f7fbc022915e8e83b5367c7ae0daf5c 382 Gene3D G3DSA:3.20.20.30 3 253 2.1E-102 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS01315 1f7fbc022915e8e83b5367c7ae0daf5c 382 Gene3D G3DSA:3.20.20.30 287 350 2.1E-102 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS16520 8fd5dc6e8a877fe99271f1e32838cd01 222 PANTHER PTHR30055 1 134 1.7E-23 T 22-04-2016 PP4_RS16520 8fd5dc6e8a877fe99271f1e32838cd01 222 Gene3D G3DSA:1.10.10.60 5 56 2.2E-18 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS16520 8fd5dc6e8a877fe99271f1e32838cd01 222 Gene3D G3DSA:1.10.357.10 57 174 1.0E-13 T 22-04-2016 IPR015893 Tetracycline transcriptional regulator, TetR-like, C-terminal GO:0003677 PP4_RS16520 8fd5dc6e8a877fe99271f1e32838cd01 222 SUPERFAMILY SSF48498 85 209 9.34E-9 T 22-04-2016 IPR011075 Tetracycline transcriptional regulator, TetR-related, C-terminal PP4_RS16520 8fd5dc6e8a877fe99271f1e32838cd01 222 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 19 32 1.2E-6 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS16520 8fd5dc6e8a877fe99271f1e32838cd01 222 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 40 63 1.2E-6 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS16520 8fd5dc6e8a877fe99271f1e32838cd01 222 Pfam PF09209 Domain of unknown function (DUF1956) 89 207 5.4E-7 T 22-04-2016 IPR015292 Transcription regulator YbiH, C-terminal PP4_RS16520 8fd5dc6e8a877fe99271f1e32838cd01 222 SUPERFAMILY SSF46689 6 76 1.39E-16 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS16520 8fd5dc6e8a877fe99271f1e32838cd01 222 PANTHER PTHR30055:SF73 1 134 1.7E-23 T 22-04-2016 PP4_RS16520 8fd5dc6e8a877fe99271f1e32838cd01 222 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 65 1.2E-9 T 22-04-2016 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 PP4_RS16985 d2cf970ffaf88e36896f98ad01ce541d 324 PANTHER PTHR30273:SF3 3 323 6.6E-64 T 22-04-2016 PP4_RS16985 d2cf970ffaf88e36896f98ad01ce541d 324 Pfam PF16220 Domain of unknown function (DUF4880) 11 52 3.1E-12 T 22-04-2016 IPR032623 FecR, N-terminal PP4_RS16985 d2cf970ffaf88e36896f98ad01ce541d 324 PANTHER PTHR30273 3 323 6.6E-64 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS16985 d2cf970ffaf88e36896f98ad01ce541d 324 PIRSF PIRSF018266 1 322 1.2E-83 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS16985 d2cf970ffaf88e36896f98ad01ce541d 324 Pfam PF04773 FecR protein 118 209 2.6E-19 T 22-04-2016 IPR006860 FecR protein PP4_RS00655 38bd91be18912466edcff37daedaa43c 211 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 32 191 1.2E-22 T 22-04-2016 IPR005586 ABC-type transport auxiliary lipoprotein component PP4_RS00655 38bd91be18912466edcff37daedaa43c 211 Gene3D G3DSA:3.40.50.10610 20 205 6.6E-59 T 22-04-2016 IPR005586 ABC-type transport auxiliary lipoprotein component PP4_RS00655 38bd91be18912466edcff37daedaa43c 211 PANTHER PTHR36698:SF1 1 201 2.2E-44 T 22-04-2016 PP4_RS00655 38bd91be18912466edcff37daedaa43c 211 SUPERFAMILY SSF159594 30 197 2.62E-42 T 22-04-2016 PP4_RS00655 38bd91be18912466edcff37daedaa43c 211 PANTHER PTHR36698 1 201 2.2E-44 T 22-04-2016 PP4_RS11640 f1b045d817e96f367c1421432a4265b1 395 Gene3D G3DSA:3.50.50.60 93 146 2.3E-4 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS11640 f1b045d817e96f367c1421432a4265b1 395 TIGRFAM TIGR02360 pbenz_hydroxyl: 4-hydroxybenzoate 3-monooxygenase 1 391 1.8E-203 T 22-04-2016 IPR012733 4-hydroxybenzoate 3-monooxygenase GO:0018659|GO:0043639|GO:0050660|GO:0055114 PP4_RS11640 f1b045d817e96f367c1421432a4265b1 395 SUPERFAMILY SSF51905 274 384 5.31E-54 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS11640 f1b045d817e96f367c1421432a4265b1 395 SUPERFAMILY SSF51905 1 172 5.31E-54 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS11640 f1b045d817e96f367c1421432a4265b1 395 Pfam PF01494 FAD binding domain 2 342 9.3E-89 T 22-04-2016 IPR002938 FAD-binding domain GO:0071949 PP4_RS11640 f1b045d817e96f367c1421432a4265b1 395 PANTHER PTHR13789 1 395 6.8E-204 T 22-04-2016 PP4_RS11640 f1b045d817e96f367c1421432a4265b1 395 SUPERFAMILY SSF54373 175 275 1.61E-45 T 22-04-2016 PP4_RS11640 f1b045d817e96f367c1421432a4265b1 395 Gene3D G3DSA:3.30.9.10 147 299 3.4E-68 T 22-04-2016 PP4_RS11640 f1b045d817e96f367c1421432a4265b1 395 PANTHER PTHR13789:SF192 1 395 6.8E-204 T 22-04-2016 PP4_RS11640 f1b045d817e96f367c1421432a4265b1 395 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 278 293 1.1E-30 T 22-04-2016 PP4_RS11640 f1b045d817e96f367c1421432a4265b1 395 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 151 166 1.1E-30 T 22-04-2016 PP4_RS11640 f1b045d817e96f367c1421432a4265b1 395 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 310 328 1.1E-30 T 22-04-2016 PP4_RS11640 f1b045d817e96f367c1421432a4265b1 395 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 4 26 1.1E-30 T 22-04-2016 PP4_RS11640 f1b045d817e96f367c1421432a4265b1 395 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 293 309 1.1E-30 T 22-04-2016 PP4_RS11640 f1b045d817e96f367c1421432a4265b1 395 Gene3D G3DSA:3.50.50.60 2 67 3.8E-5 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS19210 67188191106a4a02ac61c19197d3d188 296 Gene3D G3DSA:2.60.200.30 150 261 4.8E-45 T 22-04-2016 IPR017437 ATP-NAD kinase, PpnK-type, all-beta GO:0003951|GO:0008152|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 PP4_RS19210 67188191106a4a02ac61c19197d3d188 296 Gene3D G3DSA:3.40.50.10330 3 149 3.6E-42 T 22-04-2016 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, domain 1 GO:0003951|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 PP4_RS19210 67188191106a4a02ac61c19197d3d188 296 Pfam PF01513 ATP-NAD kinase 6 271 1.7E-70 T 22-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 PP4_RS19210 67188191106a4a02ac61c19197d3d188 296 SUPERFAMILY SSF111331 6 289 3.01E-92 T 22-04-2016 IPR016064 NAD kinase/diacylglycerol kinase-like domain PP4_RS19210 67188191106a4a02ac61c19197d3d188 296 PANTHER PTHR20275 4 291 4.9E-108 T 22-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 PP4_RS19210 67188191106a4a02ac61c19197d3d188 296 Hamap MF_00361 NAD kinase [nadK]. 5 287 34.759 T 22-04-2016 IPR002504 NAD kinase GO:0003951|GO:0006741|GO:0008152 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269 PP4_RS10080 aeb8ac59338894d6ece55b32bf83f289 341 Pfam PF13416 Bacterial extracellular solute-binding protein 46 301 1.7E-40 T 22-04-2016 PP4_RS10080 aeb8ac59338894d6ece55b32bf83f289 341 SUPERFAMILY SSF53850 28 339 2.25E-69 T 22-04-2016 PP4_RS10080 aeb8ac59338894d6ece55b32bf83f289 341 Gene3D G3DSA:3.40.190.10 129 284 6.3E-34 T 22-04-2016 PP4_RS10080 aeb8ac59338894d6ece55b32bf83f289 341 Gene3D G3DSA:3.40.190.10 29 118 3.8E-8 T 22-04-2016 PP4_RS10080 aeb8ac59338894d6ece55b32bf83f289 341 PANTHER PTHR30222 9 338 2.5E-82 T 22-04-2016 PP4_RS10080 aeb8ac59338894d6ece55b32bf83f289 341 PANTHER PTHR30222:SF2 9 338 2.5E-82 T 22-04-2016 PP4_RS24935 92445a667a08414403ec935c7d2f3cc4 141 PANTHER PTHR21011:SF1 1 135 1.7E-37 T 22-04-2016 PP4_RS24935 92445a667a08414403ec935c7d2f3cc4 141 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 94 21.846 T 22-04-2016 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 PP4_RS24935 92445a667a08414403ec935c7d2f3cc4 141 Gene3D G3DSA:3.30.70.60 1 103 1.3E-39 T 22-04-2016 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 PP4_RS24935 92445a667a08414403ec935c7d2f3cc4 141 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 93 7.3E-33 T 22-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 PP4_RS24935 92445a667a08414403ec935c7d2f3cc4 141 SUPERFAMILY SSF54995 1 102 6.8E-36 T 22-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 PP4_RS24935 92445a667a08414403ec935c7d2f3cc4 141 Pfam PF01250 Ribosomal protein S6 3 91 1.5E-25 T 22-04-2016 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 PP4_RS24935 92445a667a08414403ec935c7d2f3cc4 141 ProSitePatterns PS01048 Ribosomal protein S6 signature. 43 52 - T 22-04-2016 IPR020815 Ribosomal protein S6, conserved site GO:0003735|GO:0005840|GO:0006412|GO:0019843 PP4_RS24935 92445a667a08414403ec935c7d2f3cc4 141 PANTHER PTHR21011 1 135 1.7E-37 T 22-04-2016 PP4_RS15695 abcdaec5676b099f6b121fba9366fe1e 502 PANTHER PTHR30026 3 491 2.2E-26 T 22-04-2016 PP4_RS15695 abcdaec5676b099f6b121fba9366fe1e 502 Gene3D G3DSA:1.20.1600.10 57 465 3.3E-37 T 22-04-2016 PP4_RS15695 abcdaec5676b099f6b121fba9366fe1e 502 SUPERFAMILY SSF56954 5 465 8.63E-58 T 22-04-2016 PP4_RS15695 abcdaec5676b099f6b121fba9366fe1e 502 Pfam PF02321 Outer membrane efflux protein 61 258 3.9E-18 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PP4_RS15695 abcdaec5676b099f6b121fba9366fe1e 502 Pfam PF02321 Outer membrane efflux protein 284 465 3.5E-20 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PP4_RS11985 37df4b4f56843a82535df0c3e07d3db4 263 SUPERFAMILY SSF52096 15 196 5.31E-18 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS11985 37df4b4f56843a82535df0c3e07d3db4 263 TIGRFAM TIGR03134 malonate_gamma: biotin-independent malonate decarboxylase, gamma subunit 7 260 2.9E-94 T 22-04-2016 IPR009648 Biotin-dependent malonate decarboxylase, gamma subunit GO:0044262 MetaCyc: PWY-6060 PP4_RS11985 37df4b4f56843a82535df0c3e07d3db4 263 Pfam PF06833 Malonate decarboxylase gamma subunit (MdcE) 6 260 8.0E-92 T 22-04-2016 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal GO:0016874 KEGG: 00061+6.4.1.2|KEGG: 00253+6.4.1.2|KEGG: 00254+6.4.1.2|KEGG: 00620+6.4.1.2|KEGG: 00640+6.4.1.2|KEGG: 00720+6.4.1.2|MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6679|MetaCyc: PWY-6722|MetaCyc: PWY-7388|UniPathway: UPA00655 PP4_RS11985 37df4b4f56843a82535df0c3e07d3db4 263 Gene3D G3DSA:3.90.226.10 80 183 3.2E-14 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS20370 f21c83ffe0dff497359f4f9e42f65577 270 SUPERFAMILY SSF52540 2 268 1.1E-50 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS20370 f21c83ffe0dff497359f4f9e42f65577 270 PIRSF PIRSF003092 1 270 4.8E-91 T 22-04-2016 IPR025501 ATP binding protein MinD PP4_RS20370 f21c83ffe0dff497359f4f9e42f65577 270 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 2 267 3.3E-117 T 22-04-2016 IPR010223 ATP binding protein MinD, bacterial-type GO:0000918|GO:0016887 PP4_RS20370 f21c83ffe0dff497359f4f9e42f65577 270 PANTHER PTHR13696:SF1 4 257 1.9E-89 T 22-04-2016 PP4_RS20370 f21c83ffe0dff497359f4f9e42f65577 270 Gene3D G3DSA:3.40.50.300 2 247 7.6E-56 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS20370 f21c83ffe0dff497359f4f9e42f65577 270 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 5 216 4.6E-28 T 22-04-2016 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain PP4_RS20370 f21c83ffe0dff497359f4f9e42f65577 270 PANTHER PTHR13696 4 257 1.9E-89 T 22-04-2016 PP4_RS19650 631aa9e2422326fb05f4ae15531c07ba 857 Pfam PF13954 PapC N-terminal domain 44 191 2.0E-34 T 22-04-2016 IPR025885 PapC, N-terminal domain GO:0005515 PP4_RS19650 631aa9e2422326fb05f4ae15531c07ba 857 PANTHER PTHR30451 6 841 1.9E-227 T 22-04-2016 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 PP4_RS19650 631aa9e2422326fb05f4ae15531c07ba 857 Pfam PF00577 Outer membrane usher protein 208 747 4.1E-161 T 22-04-2016 IPR000015 Outer membrane usher protein GO:0005215|GO:0006810|GO:0016020 PP4_RS19650 631aa9e2422326fb05f4ae15531c07ba 857 Pfam PF13953 PapC C-terminal domain 758 820 2.9E-16 T 22-04-2016 IPR025949 PapC-like, C-terminal domain PP4_RS19650 631aa9e2422326fb05f4ae15531c07ba 857 ProSitePatterns PS01151 Fimbrial biogenesis outer membrane usher protein signature. 319 329 - T 22-04-2016 IPR018030 Fimbrial membrane usher, conserved site PP4_RS19650 631aa9e2422326fb05f4ae15531c07ba 857 SUPERFAMILY SSF141729 73 183 2.22E-26 T 22-04-2016 PP4_RS19650 631aa9e2422326fb05f4ae15531c07ba 857 PANTHER PTHR30451:SF2 6 841 1.9E-227 T 22-04-2016 PP4_RS19710 31e39a39209ef35ee4eb4fd348b437cc 131 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 7 130 37.962 T 22-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 PP4_RS19710 31e39a39209ef35ee4eb4fd348b437cc 131 Gene3D G3DSA:2.170.150.20 3 130 3.3E-61 T 22-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 PP4_RS19710 31e39a39209ef35ee4eb4fd348b437cc 131 SUPERFAMILY SSF51316 5 130 3.03E-58 T 22-04-2016 IPR011057 Mss4-like PP4_RS19710 31e39a39209ef35ee4eb4fd348b437cc 131 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 6 127 1.0E-55 T 22-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 PP4_RS19710 31e39a39209ef35ee4eb4fd348b437cc 131 Pfam PF01641 SelR domain 10 128 2.9E-54 T 22-04-2016 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 PP4_RS19710 31e39a39209ef35ee4eb4fd348b437cc 131 PANTHER PTHR10173:SF18 2 131 2.0E-61 T 22-04-2016 PP4_RS19710 31e39a39209ef35ee4eb4fd348b437cc 131 PANTHER PTHR10173 2 131 2.0E-61 T 22-04-2016 IPR028427 Peptide methionine sulfoxide reductase GO:0006979|GO:0016671|GO:0030091 PP4_RS16500 8e6b5db4821e6ee85d02851462e43abd 163 SUPERFAMILY SSF55729 1 161 9.41E-25 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS16500 8e6b5db4821e6ee85d02851462e43abd 163 PANTHER PTHR10908:SF0 4 163 4.6E-28 T 22-04-2016 PP4_RS16500 8e6b5db4821e6ee85d02851462e43abd 163 Pfam PF00583 Acetyltransferase (GNAT) family 51 142 8.5E-13 T 22-04-2016 IPR000182 GNAT domain GO:0008080 PP4_RS16500 8e6b5db4821e6ee85d02851462e43abd 163 Gene3D G3DSA:3.40.630.30 2 161 2.0E-36 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS16500 8e6b5db4821e6ee85d02851462e43abd 163 PANTHER PTHR10908 4 163 4.6E-28 T 22-04-2016 PP4_RS10860 506f81d72ac3f459f9060a45b20b46ed 129 PANTHER PTHR24423 8 123 5.5E-17 T 22-04-2016 PP4_RS10860 506f81d72ac3f459f9060a45b20b46ed 129 SUPERFAMILY SSF52172 10 124 1.99E-25 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS10860 506f81d72ac3f459f9060a45b20b46ed 129 Pfam PF00072 Response regulator receiver domain 11 119 4.6E-17 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS10860 506f81d72ac3f459f9060a45b20b46ed 129 PANTHER PTHR24423:SF458 8 123 5.5E-17 T 22-04-2016 PP4_RS10860 506f81d72ac3f459f9060a45b20b46ed 129 Gene3D G3DSA:3.40.50.2300 9 124 6.8E-26 T 22-04-2016 PP4_RS10860 506f81d72ac3f459f9060a45b20b46ed 129 SMART SM00448 9 119 6.8E-18 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS05270 384756435d0de75142d97b3554b920d0 174 Pfam PF02508 Rnf-Nqr subunit, membrane protein 2 154 2.6E-5 T 22-04-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 PP4_RS05270 384756435d0de75142d97b3554b920d0 174 PIRSF PIRSF006102 1 174 8.9E-24 T 22-04-2016 IPR003667 Rnf-Nqr subunit, membrane protein GO:0016020 PP4_RS16570 75b88b52a7cf760facaa51c59d367563 1599 Pfam PF14496 C-terminal novel E3 ligase, LRR-interacting 1259 1506 3.8E-67 T 22-04-2016 IPR029487 Novel E3 ligase domain GO:0004842|GO:0016567 KEGG: 00220+6.3.2.-|KEGG: 00261+6.3.2.-|KEGG: 00380+6.3.2.- PP4_RS16570 75b88b52a7cf760facaa51c59d367563 1599 Gene3D G3DSA:1.20.1270.130 1265 1330 2.2E-4 T 22-04-2016 PP4_RS16570 75b88b52a7cf760facaa51c59d367563 1599 Gene3D G3DSA:1.20.58.360 1427 1501 2.1E-19 T 22-04-2016 PP4_RS16570 75b88b52a7cf760facaa51c59d367563 1599 Gene3D G3DSA:1.20.58.360 1335 1391 2.1E-19 T 22-04-2016 PP4_RS16570 75b88b52a7cf760facaa51c59d367563 1599 SUPERFAMILY SSF52058 988 1205 1.13E-22 T 22-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like PP4_RS16570 75b88b52a7cf760facaa51c59d367563 1599 Gene3D G3DSA:3.80.10.10 1094 1202 1.4E-12 T 22-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like PP4_RS16570 75b88b52a7cf760facaa51c59d367563 1599 Gene3D G3DSA:3.80.10.10 988 1093 1.9E-14 T 22-04-2016 IPR032675 Leucine-rich repeat domain, L domain-like PP4_RS02975 bbd38d92fd956e06a3fc1680c5f5f5c0 462 Pfam PF04851 Type III restriction enzyme, res subunit 4 80 7.4E-8 T 22-04-2016 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 PP4_RS02975 bbd38d92fd956e06a3fc1680c5f5f5c0 462 SUPERFAMILY SSF52540 230 361 3.89E-20 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS02975 bbd38d92fd956e06a3fc1680c5f5f5c0 462 SUPERFAMILY SSF52540 24 159 3.89E-20 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS02975 bbd38d92fd956e06a3fc1680c5f5f5c0 462 Gene3D G3DSA:3.40.50.300 258 368 8.9E-10 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS02975 bbd38d92fd956e06a3fc1680c5f5f5c0 462 Pfam PF00271 Helicase conserved C-terminal domain 289 356 1.4E-4 T 22-04-2016 IPR001650 Helicase, C-terminal PP4_RS02975 bbd38d92fd956e06a3fc1680c5f5f5c0 462 Gene3D G3DSA:3.40.50.300 4 165 9.7E-15 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS06410 ade35d24b76529082a1a3d2ce4c5263e 278 Pfam PF13509 S1 domain 4 66 1.4E-23 T 22-04-2016 PP4_RS06410 ade35d24b76529082a1a3d2ce4c5263e 278 Pfam PF13509 S1 domain 72 130 2.2E-8 T 22-04-2016 PP4_RS06410 ade35d24b76529082a1a3d2ce4c5263e 278 SMART SM00316 146 208 0.053 T 22-04-2016 IPR022967 RNA-binding domain, S1 PP4_RS06410 ade35d24b76529082a1a3d2ce4c5263e 278 SMART SM00316 71 133 1.5 T 22-04-2016 IPR022967 RNA-binding domain, S1 PP4_RS06410 ade35d24b76529082a1a3d2ce4c5263e 278 PIRSF PIRSF012524 1 278 3.9E-84 T 22-04-2016 IPR014464 Conserved virulence factor B PP4_RS06410 ade35d24b76529082a1a3d2ce4c5263e 278 PANTHER PTHR37296 1 276 4.7E-99 T 22-04-2016 PP4_RS12155 bc955d9a32d2361d5afa960261186da5 373 Gene3D G3DSA:2.130.10.10 31 366 2.7E-54 T 22-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 PP4_RS12155 bc955d9a32d2361d5afa960261186da5 373 SUPERFAMILY SSF50969 33 366 7.46E-47 T 22-04-2016 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like PP4_RS12155 bc955d9a32d2361d5afa960261186da5 373 TIGRFAM TIGR03907 QH_beta: quinohemoprotein amine dehydrogenase, beta subunit 35 373 4.3E-166 T 22-04-2016 IPR023879 Quinohemoprotein amine dehydrogenase, beta subunit PP4_RS06000 422491f161297673fc0d55d22c3fba43 157 PANTHER PTHR10681 1 154 2.2E-45 T 22-04-2016 PP4_RS06000 422491f161297673fc0d55d22c3fba43 157 PIRSF PIRSF000239 1 157 1.3E-25 T 22-04-2016 IPR024706 Peroxiredoxin, AhpC-type KEGG: 00480+1.11.1.15 PP4_RS06000 422491f161297673fc0d55d22c3fba43 157 Pfam PF00578 AhpC/TSA family 7 133 5.2E-33 T 22-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 PP4_RS06000 422491f161297673fc0d55d22c3fba43 157 Gene3D G3DSA:3.40.30.10 2 154 1.7E-46 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS06000 422491f161297673fc0d55d22c3fba43 157 SUPERFAMILY SSF52833 4 154 2.47E-47 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS12745 6a9f4aac30cb69027b722f23b8200a3a 225 Pfam PF11769 Protein of unknown function (DUF3313) 17 213 1.8E-57 T 22-04-2016 IPR021747 Protein of unknown function DUF3313 PP4_RS09855 ed9362b527b10688f1eed4977fd63c36 174 Pfam PF00583 Acetyltransferase (GNAT) family 66 142 1.9E-11 T 22-04-2016 IPR000182 GNAT domain GO:0008080 PP4_RS09855 ed9362b527b10688f1eed4977fd63c36 174 Gene3D G3DSA:3.40.630.30 4 146 2.3E-25 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS09855 ed9362b527b10688f1eed4977fd63c36 174 SUPERFAMILY SSF55729 7 148 5.49E-24 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS09855 ed9362b527b10688f1eed4977fd63c36 174 PANTHER PTHR23091 1 148 1.9E-14 T 22-04-2016 PP4_RS05125 4fd3b671f8078410642c143a53b1a9d2 111 Pfam PF06942 GlpM protein 5 111 4.7E-48 T 22-04-2016 IPR009707 Membrane protein GlpM/YdgC PP4_RS05125 4fd3b671f8078410642c143a53b1a9d2 111 ProDom PD028709 MEMBRANE INNER YDGC GLPM ALGINATE BIOSYNTHESIS TRANSMEMBRANE REQUIRED FOR UNCHARACTERIZED 21 111 1.0E-45 T 22-04-2016 IPR009707 Membrane protein GlpM/YdgC PP4_RS25535 189e9e6f116ceb5e461271a63d6bf42f 423 TIGRFAM TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type 22 422 9.4E-87 T 22-04-2016 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 PP4_RS25535 189e9e6f116ceb5e461271a63d6bf42f 423 Gene3D G3DSA:3.20.20.140 70 386 1.3E-84 T 22-04-2016 PP4_RS25535 189e9e6f116ceb5e461271a63d6bf42f 423 Pfam PF01979 Amidohydrolase family 55 419 3.5E-14 T 22-04-2016 IPR006680 Amidohydrolase-related GO:0016787 PP4_RS25535 189e9e6f116ceb5e461271a63d6bf42f 423 PANTHER PTHR11647:SF70 2 422 3.1E-140 T 22-04-2016 PP4_RS25535 189e9e6f116ceb5e461271a63d6bf42f 423 PANTHER PTHR11647 2 422 3.1E-140 T 22-04-2016 PP4_RS25535 189e9e6f116ceb5e461271a63d6bf42f 423 SUPERFAMILY SSF51338 3 55 1.41E-21 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PP4_RS25535 189e9e6f116ceb5e461271a63d6bf42f 423 SUPERFAMILY SSF51338 367 422 1.41E-21 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PP4_RS25535 189e9e6f116ceb5e461271a63d6bf42f 423 Hamap MF_00220_B Dihydroorotase [pyrC]. 2 423 31.048 T 22-04-2016 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|UniPathway: UPA00070 PP4_RS25535 189e9e6f116ceb5e461271a63d6bf42f 423 Gene3D G3DSA:2.30.40.10 3 69 6.3E-11 T 22-04-2016 IPR011059 Metal-dependent hydrolase, composite domain GO:0016810 PP4_RS25535 189e9e6f116ceb5e461271a63d6bf42f 423 SUPERFAMILY SSF51556 56 367 3.74E-85 T 22-04-2016 IPR032466 Metal-dependent hydrolase PP4_RS21545 125fa85e522f8225f70af17fe3355647 103 PANTHER PTHR13799:SF18 2 102 1.0E-53 T 22-04-2016 PP4_RS21545 125fa85e522f8225f70af17fe3355647 103 Gene3D G3DSA:3.30.70.830 1 102 3.6E-43 T 22-04-2016 PP4_RS21545 125fa85e522f8225f70af17fe3355647 103 PANTHER PTHR13799 2 102 1.0E-53 T 22-04-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 PP4_RS21545 125fa85e522f8225f70af17fe3355647 103 SUPERFAMILY SSF102705 2 101 1.33E-24 T 22-04-2016 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 PP4_RS00040 37b412c9d415e950c114c3776ce58a27 638 Pfam PF06527 TniQ 6 114 4.9E-16 T 22-04-2016 IPR009492 TniQ PP4_RS12990 f5819135fd4e9323cb36cb659b676e05 315 Gene3D G3DSA:3.40.50.720 139 297 1.9E-49 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS12990 f5819135fd4e9323cb36cb659b676e05 315 PANTHER PTHR13812 1 307 3.2E-71 T 22-04-2016 PP4_RS12990 f5819135fd4e9323cb36cb659b676e05 315 PIRSF PIRSF001439 1 314 5.1E-65 T 22-04-2016 IPR003462 Ornithine cyclodeaminase/mu-crystallin PP4_RS12990 f5819135fd4e9323cb36cb659b676e05 315 PANTHER PTHR13812:SF19 1 307 3.2E-71 T 22-04-2016 PP4_RS12990 f5819135fd4e9323cb36cb659b676e05 315 Gene3D G3DSA:3.30.1780.10 1 138 1.2E-37 T 22-04-2016 IPR023401 Ornithine cyclodeaminase, N-terminal PP4_RS12990 f5819135fd4e9323cb36cb659b676e05 315 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 5 308 3.0E-75 T 22-04-2016 IPR003462 Ornithine cyclodeaminase/mu-crystallin PP4_RS12990 f5819135fd4e9323cb36cb659b676e05 315 SUPERFAMILY SSF51735 1 311 5.97E-83 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS06745 5437e3e0e61a6f05072ff4b31ae3c3af 284 PANTHER PTHR33969 28 272 1.4E-89 T 22-04-2016 PP4_RS06745 5437e3e0e61a6f05072ff4b31ae3c3af 284 Pfam PF02616 Segregation and condensation protein ScpA 61 271 1.1E-28 T 22-04-2016 IPR003768 Segregation and condensation protein A PP4_RS06745 5437e3e0e61a6f05072ff4b31ae3c3af 284 PANTHER PTHR33969:SF2 28 272 1.4E-89 T 22-04-2016 PP4_RS06745 5437e3e0e61a6f05072ff4b31ae3c3af 284 Hamap MF_01805 Segregation and condensation protein A [scpA]. 44 274 21.673 T 22-04-2016 IPR003768 Segregation and condensation protein A PP4_RS22340 047fe4c9b6ad1a215118f0f8ea990441 272 ProSitePatterns PS00630 Inositol monophosphatase family signature 2. 216 230 - T 22-04-2016 IPR020550 Inositol monophosphatase, conserved site GO:0046854 PP4_RS22340 047fe4c9b6ad1a215118f0f8ea990441 272 Gene3D G3DSA:3.40.190.80 153 268 2.2E-40 T 22-04-2016 PP4_RS22340 047fe4c9b6ad1a215118f0f8ea990441 272 PRINTS PR01959 SuhB family inositol monophosphatase signature 107 126 8.4E-21 T 22-04-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 PP4_RS22340 047fe4c9b6ad1a215118f0f8ea990441 272 PRINTS PR01959 SuhB family inositol monophosphatase signature 203 215 8.4E-21 T 22-04-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 PP4_RS22340 047fe4c9b6ad1a215118f0f8ea990441 272 PRINTS PR01959 SuhB family inositol monophosphatase signature 161 187 8.4E-21 T 22-04-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 PP4_RS22340 047fe4c9b6ad1a215118f0f8ea990441 272 PRINTS PR01959 SuhB family inositol monophosphatase signature 17 39 8.4E-21 T 22-04-2016 IPR022337 Inositol monophosphatase, SuhB GO:0008934|GO:0046855 KEGG: 00521+3.1.3.25|KEGG: 00562+3.1.3.25|KEGG: 04070+3.1.3.25|MetaCyc: PWY-2301|MetaCyc: PWY-4702|MetaCyc: PWY-6363 PP4_RS22340 047fe4c9b6ad1a215118f0f8ea990441 272 SUPERFAMILY SSF56655 1 267 3.66E-84 T 22-04-2016 PP4_RS22340 047fe4c9b6ad1a215118f0f8ea990441 272 Pfam PF00459 Inositol monophosphatase family 1 253 1.2E-65 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 PP4_RS22340 047fe4c9b6ad1a215118f0f8ea990441 272 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 84 97 - T 22-04-2016 IPR020583 Inositol monophosphatase, metal-binding site PP4_RS22340 047fe4c9b6ad1a215118f0f8ea990441 272 Gene3D G3DSA:3.30.540.10 2 152 5.6E-49 T 22-04-2016 PP4_RS22340 047fe4c9b6ad1a215118f0f8ea990441 272 PRINTS PR00377 Inositol monophosphatase superfamily signature 182 203 4.8E-61 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 PP4_RS22340 047fe4c9b6ad1a215118f0f8ea990441 272 PRINTS PR00377 Inositol monophosphatase superfamily signature 38 58 4.8E-61 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 PP4_RS22340 047fe4c9b6ad1a215118f0f8ea990441 272 PRINTS PR00377 Inositol monophosphatase superfamily signature 60 76 4.8E-61 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 PP4_RS22340 047fe4c9b6ad1a215118f0f8ea990441 272 PRINTS PR00377 Inositol monophosphatase superfamily signature 84 100 4.8E-61 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 PP4_RS22340 047fe4c9b6ad1a215118f0f8ea990441 272 PRINTS PR00377 Inositol monophosphatase superfamily signature 133 156 4.8E-61 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 PP4_RS22340 047fe4c9b6ad1a215118f0f8ea990441 272 PRINTS PR00377 Inositol monophosphatase superfamily signature 213 237 4.8E-61 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 PP4_RS22340 047fe4c9b6ad1a215118f0f8ea990441 272 PANTHER PTHR20854:SF4 1 263 2.2E-94 T 22-04-2016 PP4_RS22340 047fe4c9b6ad1a215118f0f8ea990441 272 PANTHER PTHR20854 1 263 2.2E-94 T 22-04-2016 IPR000760 Inositol monophosphatase GO:0046854 PP4_RS26280 ae97610e0055fbb383552e8880170904 300 SUPERFAMILY SSF50956 16 298 4.71E-51 T 22-04-2016 PP4_RS26280 ae97610e0055fbb383552e8880170904 300 Gene3D G3DSA:2.120.10.30 64 288 5.0E-12 T 22-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like PP4_RS26280 ae97610e0055fbb383552e8880170904 300 Pfam PF06977 SdiA-regulated 45 296 3.0E-104 T 22-04-2016 IPR009722 SdiA-regulated PP4_RS19805 03510d4fec0db493d73e19cded1024cc 249 SUPERFAMILY SSF51735 8 247 2.24E-82 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS19805 03510d4fec0db493d73e19cded1024cc 249 PANTHER PTHR24322 14 141 1.2E-61 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19805 03510d4fec0db493d73e19cded1024cc 249 PANTHER PTHR24322 158 190 1.2E-61 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19805 03510d4fec0db493d73e19cded1024cc 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 4.8E-13 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19805 03510d4fec0db493d73e19cded1024cc 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 4.8E-13 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19805 03510d4fec0db493d73e19cded1024cc 249 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 86 97 4.8E-13 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19805 03510d4fec0db493d73e19cded1024cc 249 PANTHER PTHR24322:SF343 14 141 1.2E-61 T 22-04-2016 PP4_RS19805 03510d4fec0db493d73e19cded1024cc 249 PANTHER PTHR24322:SF343 158 190 1.2E-61 T 22-04-2016 PP4_RS19805 03510d4fec0db493d73e19cded1024cc 249 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 18 247 3.5E-65 T 22-04-2016 PP4_RS19805 03510d4fec0db493d73e19cded1024cc 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 86 97 5.2E-42 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19805 03510d4fec0db493d73e19cded1024cc 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 11 28 5.2E-42 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19805 03510d4fec0db493d73e19cded1024cc 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 5.2E-42 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19805 03510d4fec0db493d73e19cded1024cc 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 5.2E-42 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19805 03510d4fec0db493d73e19cded1024cc 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 211 231 5.2E-42 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19805 03510d4fec0db493d73e19cded1024cc 249 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 5.2E-42 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS19805 03510d4fec0db493d73e19cded1024cc 249 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 10 189 0.002 T 22-04-2016 PP4_RS19805 03510d4fec0db493d73e19cded1024cc 249 Gene3D G3DSA:3.40.50.720 5 248 6.5E-85 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS14870 ec7a6e9e7e76ef0a1a1480f15b31c5d9 199 Pfam PF01381 Helix-turn-helix 24 78 6.5E-11 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS14870 ec7a6e9e7e76ef0a1a1480f15b31c5d9 199 SUPERFAMILY SSF51182 86 197 8.67E-29 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS14870 ec7a6e9e7e76ef0a1a1480f15b31c5d9 199 Pfam PF07883 Cupin domain 127 193 2.2E-18 T 22-04-2016 IPR013096 Cupin 2, conserved barrel PP4_RS14870 ec7a6e9e7e76ef0a1a1480f15b31c5d9 199 SMART SM00530 23 78 2.1E-11 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS14870 ec7a6e9e7e76ef0a1a1480f15b31c5d9 199 Gene3D G3DSA:1.10.260.40 18 73 9.4E-20 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS14870 ec7a6e9e7e76ef0a1a1480f15b31c5d9 199 PANTHER PTHR10245 20 199 1.8E-56 T 22-04-2016 PP4_RS14870 ec7a6e9e7e76ef0a1a1480f15b31c5d9 199 Gene3D G3DSA:2.60.120.10 74 198 3.3E-26 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS14870 ec7a6e9e7e76ef0a1a1480f15b31c5d9 199 PANTHER PTHR10245:SF49 20 199 1.8E-56 T 22-04-2016 PP4_RS14870 ec7a6e9e7e76ef0a1a1480f15b31c5d9 199 SUPERFAMILY SSF47413 18 82 1.49E-16 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS02880 abca3627a9bd857cc5fa8cc26b545cc6 270 SUPERFAMILY SSF53807 20 262 1.22E-53 T 22-04-2016 PP4_RS02880 abca3627a9bd857cc5fa8cc26b545cc6 270 PANTHER PTHR30535 15 262 5.4E-46 T 22-04-2016 PP4_RS02880 abca3627a9bd857cc5fa8cc26b545cc6 270 Pfam PF01497 Periplasmic binding protein 23 238 5.2E-24 T 22-04-2016 IPR002491 ABC transporter periplasmic binding domain GO:0005488 PP4_RS02880 abca3627a9bd857cc5fa8cc26b545cc6 270 Gene3D G3DSA:3.40.50.1980 141 262 1.8E-33 T 22-04-2016 PP4_RS02880 abca3627a9bd857cc5fa8cc26b545cc6 270 Gene3D G3DSA:3.40.50.1980 20 138 3.9E-25 T 22-04-2016 PP4_RS05735 1519c4612aad66959e38d7ad05666ce5 225 SMART SM00448 1 112 2.5E-39 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS05735 1519c4612aad66959e38d7ad05666ce5 225 Pfam PF00072 Response regulator receiver domain 4 112 2.6E-27 T 22-04-2016 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Reactome: REACT_14797 PP4_RS05735 1519c4612aad66959e38d7ad05666ce5 225 Pfam PF00486 Transcriptional regulatory protein, C terminal 145 220 1.5E-22 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS05735 1519c4612aad66959e38d7ad05666ce5 225 PANTHER PTHR26402 1 223 9.3E-111 T 22-04-2016 PP4_RS05735 1519c4612aad66959e38d7ad05666ce5 225 Gene3D G3DSA:3.40.50.2300 1 120 3.9E-36 T 22-04-2016 PP4_RS05735 1519c4612aad66959e38d7ad05666ce5 225 PANTHER PTHR26402:SF600 1 223 9.3E-111 T 22-04-2016 PP4_RS05735 1519c4612aad66959e38d7ad05666ce5 225 SUPERFAMILY SSF52172 1 177 1.61E-40 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS05735 1519c4612aad66959e38d7ad05666ce5 225 SMART SM00862 145 220 4.4E-23 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS05735 1519c4612aad66959e38d7ad05666ce5 225 Gene3D G3DSA:1.10.10.10 124 221 1.6E-28 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS14745 713fc00ede7079105de1b159d944ff4a 1224 PANTHER PTHR36985 3 1224 1.3E-272 T 22-04-2016 PP4_RS14745 713fc00ede7079105de1b159d944ff4a 1224 Pfam PF04357 TamB, inner membrane protein subunit of TAM complex 899 1224 1.2E-58 T 22-04-2016 IPR007452 Translocation and assembly module TamB PP4_RS12250 059e81c39843bb7945f8b31b27a93f08 243 Gene3D G3DSA:3.60.21.10 9 226 1.3E-36 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS12250 059e81c39843bb7945f8b31b27a93f08 243 SUPERFAMILY SSF56300 6 221 2.73E-38 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS12250 059e81c39843bb7945f8b31b27a93f08 243 PANTHER PTHR24032:SF31 1 228 3.2E-21 T 22-04-2016 PP4_RS12250 059e81c39843bb7945f8b31b27a93f08 243 PANTHER PTHR24032 1 228 3.2E-21 T 22-04-2016 PP4_RS12250 059e81c39843bb7945f8b31b27a93f08 243 Pfam PF00149 Calcineurin-like phosphoesterase 16 207 1.5E-12 T 22-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 PP4_RS19565 6a04146dca17ee55df69f3d3502b795b 254 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 4 246 1.8E-97 T 22-04-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 PP4_RS19565 6a04146dca17ee55df69f3d3502b795b 254 Gene3D G3DSA:3.90.550.10 5 253 7.2E-83 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS19565 6a04146dca17ee55df69f3d3502b795b 254 Pfam PF02348 Cytidylyltransferase 7 226 4.9E-58 T 22-04-2016 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 PP4_RS19565 6a04146dca17ee55df69f3d3502b795b 254 Hamap MF_00057 3-deoxy-manno-octulosonate cytidylyltransferase [kdsB]. 3 253 44.865 T 22-04-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 PP4_RS19565 6a04146dca17ee55df69f3d3502b795b 254 PANTHER PTHR21485 5 254 1.1E-114 T 22-04-2016 PP4_RS19565 6a04146dca17ee55df69f3d3502b795b 254 SUPERFAMILY SSF53448 5 252 6.86E-64 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS19565 6a04146dca17ee55df69f3d3502b795b 254 PANTHER PTHR21485:SF4 5 254 1.1E-114 T 22-04-2016 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|UniPathway: UPA00030|UniPathway: UPA00358 PP4_RS09310 e21cfdb7c836f841b99c40411e058ba5 330 PANTHER PTHR11732:SF215 1 327 3.1E-176 T 22-04-2016 PP4_RS09310 e21cfdb7c836f841b99c40411e058ba5 330 Pfam PF00248 Aldo/keto reductase family 15 308 8.3E-70 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain PP4_RS09310 e21cfdb7c836f841b99c40411e058ba5 330 Gene3D G3DSA:3.20.20.100 1 320 4.4E-108 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain PP4_RS09310 e21cfdb7c836f841b99c40411e058ba5 330 SUPERFAMILY SSF51430 1 313 1.44E-97 T 22-04-2016 IPR023210 NADP-dependent oxidoreductase domain PP4_RS09310 e21cfdb7c836f841b99c40411e058ba5 330 PANTHER PTHR11732 1 327 3.1E-176 T 22-04-2016 IPR001395 Aldo/keto reductase/potassium channel subunit beta PP4_RS00875 8e07c3136e4973f3d3f187727497ac00 287 SUPERFAMILY SSF161098 85 268 2.62E-25 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS00875 8e07c3136e4973f3d3f187727497ac00 287 PANTHER PTHR30151 6 287 4.4E-141 T 22-04-2016 PP4_RS00875 8e07c3136e4973f3d3f187727497ac00 287 PANTHER PTHR30151:SF16 6 287 4.4E-141 T 22-04-2016 PP4_RS00875 8e07c3136e4973f3d3f187727497ac00 287 Gene3D G3DSA:1.10.3720.10 83 277 8.0E-18 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS00875 8e07c3136e4973f3d3f187727497ac00 287 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 97 282 3.2E-14 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS24620 5142cb88625b94d114503d1dcde7cb86 151 Gene3D G3DSA:3.10.129.10 13 146 1.5E-33 T 22-04-2016 IPR029069 HotDog domain PP4_RS24620 5142cb88625b94d114503d1dcde7cb86 151 Pfam PF01575 MaoC like domain 12 118 1.0E-27 T 22-04-2016 IPR002539 MaoC-like domain PP4_RS24620 5142cb88625b94d114503d1dcde7cb86 151 SUPERFAMILY SSF54637 8 146 6.36E-36 T 22-04-2016 IPR029069 HotDog domain PP4_RS24620 5142cb88625b94d114503d1dcde7cb86 151 PANTHER PTHR13078 12 145 1.3E-38 T 22-04-2016 PP4_RS05095 73fd54e8d46494ec0518c6fc0b6a081c 472 PANTHER PTHR11785 18 463 3.7E-267 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS05095 73fd54e8d46494ec0518c6fc0b6a081c 472 PANTHER PTHR11785:SF29 18 463 3.7E-267 T 22-04-2016 PP4_RS05095 73fd54e8d46494ec0518c6fc0b6a081c 472 PIRSF PIRSF006060 3 471 4.2E-75 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS05095 73fd54e8d46494ec0518c6fc0b6a081c 472 ProSitePatterns PS00218 Amino acid permeases signature. 51 81 - T 22-04-2016 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 PP4_RS05095 73fd54e8d46494ec0518c6fc0b6a081c 472 Pfam PF00324 Amino acid permease 26 447 1.4E-115 T 22-04-2016 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 PP4_RS16550 0fe1e2845bb8a3e6bc15b92814ee3c68 559 PANTHER PTHR23508 18 344 3.4E-231 T 22-04-2016 PP4_RS16550 0fe1e2845bb8a3e6bc15b92814ee3c68 559 PANTHER PTHR23508 459 558 3.4E-231 T 22-04-2016 PP4_RS16550 0fe1e2845bb8a3e6bc15b92814ee3c68 559 SUPERFAMILY SSF103473 20 343 1.83E-59 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS16550 0fe1e2845bb8a3e6bc15b92814ee3c68 559 SUPERFAMILY SSF103473 461 555 1.83E-59 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS16550 0fe1e2845bb8a3e6bc15b92814ee3c68 559 Gene3D G3DSA:1.20.1250.20 23 225 3.9E-22 T 22-04-2016 PP4_RS16550 0fe1e2845bb8a3e6bc15b92814ee3c68 559 Gene3D G3DSA:1.20.1250.20 257 342 9.2E-26 T 22-04-2016 PP4_RS16550 0fe1e2845bb8a3e6bc15b92814ee3c68 559 Gene3D G3DSA:1.20.1250.20 457 554 9.2E-26 T 22-04-2016 PP4_RS16550 0fe1e2845bb8a3e6bc15b92814ee3c68 559 PANTHER PTHR23508:SF7 18 344 3.4E-231 T 22-04-2016 PP4_RS16550 0fe1e2845bb8a3e6bc15b92814ee3c68 559 PANTHER PTHR23508:SF7 459 558 3.4E-231 T 22-04-2016 PP4_RS16550 0fe1e2845bb8a3e6bc15b92814ee3c68 559 Pfam PF00083 Sugar (and other) transporter 27 240 7.7E-28 T 22-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 PP4_RS16550 0fe1e2845bb8a3e6bc15b92814ee3c68 559 Pfam PF00083 Sugar (and other) transporter 463 556 4.6E-6 T 22-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 PP4_RS16550 0fe1e2845bb8a3e6bc15b92814ee3c68 559 ProSitePatterns PS00217 Sugar transport proteins signature 2. 135 160 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PP4_RS12095 3c730f01affee300a7885965f9e856df 137 Pfam PF10614 Type VIII secretion system (T8SS), CsgF protein 12 133 3.5E-31 T 22-04-2016 IPR018893 Type VIII secretion system, CsgF PP4_RS24785 269746c57efd3314d0e1af56c2541696 101 Pfam PF13591 MerR HTH family regulatory protein 10 93 4.7E-23 T 22-04-2016 PP4_RS24785 269746c57efd3314d0e1af56c2541696 101 Hamap MF_01155 Chaperone modulatory protein CbpM [cbpM]. 2 98 27.596 T 22-04-2016 IPR022835 Chaperone modulatory protein CbpM PP4_RS27340 4d44a648df78c1a7234e9f8855af8cf8 394 PIRSF PIRSF003085 1 394 1.6E-136 T 22-04-2016 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 PP4_RS27340 4d44a648df78c1a7234e9f8855af8cf8 394 Pfam PF02353 Mycolic acid cyclopropane synthetase 98 372 2.6E-112 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS27340 4d44a648df78c1a7234e9f8855af8cf8 394 PANTHER PTHR10108:SF743 309 394 8.5E-125 T 22-04-2016 PP4_RS27340 4d44a648df78c1a7234e9f8855af8cf8 394 PANTHER PTHR10108:SF743 31 292 8.5E-125 T 22-04-2016 PP4_RS27340 4d44a648df78c1a7234e9f8855af8cf8 394 PANTHER PTHR10108 309 394 8.5E-125 T 22-04-2016 PP4_RS27340 4d44a648df78c1a7234e9f8855af8cf8 394 PANTHER PTHR10108 31 292 8.5E-125 T 22-04-2016 PP4_RS27340 4d44a648df78c1a7234e9f8855af8cf8 394 Gene3D G3DSA:3.40.50.150 100 375 3.5E-93 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS27340 4d44a648df78c1a7234e9f8855af8cf8 394 SUPERFAMILY SSF53335 109 378 9.28E-80 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS04080 260362abede7bcc8eff90a6193b1ac58 493 Pfam PF13641 Glycosyltransferase like family 2 86 342 4.1E-54 T 22-04-2016 PP4_RS04080 260362abede7bcc8eff90a6193b1ac58 493 SUPERFAMILY SSF53448 387 393 3.04E-11 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS04080 260362abede7bcc8eff90a6193b1ac58 493 SUPERFAMILY SSF53448 141 349 3.04E-11 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS04080 260362abede7bcc8eff90a6193b1ac58 493 ProDom PD339107 ALGINATE ALG8 BIOSYNTHESIS TRANSFERASE TRANSMEMBRANE MEMBRANE 2.4.1.- GLYCOSYL GLYCOSYLTRANSFERASE PRECURSOR 1 493 0.0 T 22-04-2016 PP4_RS01150 26f56163ec55c7f9c2552b4e2b623956 287 Pfam PF00005 ABC transporter 42 180 4.3E-32 T 22-04-2016 IPR003439 ABC transporter-like GO:0005524|GO:0016887 PP4_RS01150 26f56163ec55c7f9c2552b4e2b623956 287 PANTHER PTHR24220 23 247 3.8E-86 T 22-04-2016 PP4_RS01150 26f56163ec55c7f9c2552b4e2b623956 287 SMART SM00382 50 231 6.4E-16 T 22-04-2016 IPR003593 AAA+ ATPase domain PP4_RS01150 26f56163ec55c7f9c2552b4e2b623956 287 Gene3D G3DSA:3.40.50.300 13 234 1.9E-67 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS01150 26f56163ec55c7f9c2552b4e2b623956 287 PANTHER PTHR24220:SF589 23 247 3.8E-86 T 22-04-2016 PP4_RS01150 26f56163ec55c7f9c2552b4e2b623956 287 ProSitePatterns PS00211 ABC transporters family signature. 153 167 - T 22-04-2016 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 PP4_RS01150 26f56163ec55c7f9c2552b4e2b623956 287 SUPERFAMILY SSF52540 22 257 2.66E-68 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS20230 d3ff5b3651aa5a65c6b0f423793d422e 174 Pfam PF09832 Uncharacterized protein conserved in bacteria (DUF2059) 91 148 3.0E-22 T 22-04-2016 IPR018637 Domain of unknown function DUF2059 PP4_RS04260 0f9b768448a801263f3ece7b35ac91d8 123 Hamap MF_00048 UPF0102 protein YraN [yraN]. 6 117 23.207 T 22-04-2016 IPR003509 Uncharacterised protein family UPF0102 PP4_RS04260 0f9b768448a801263f3ece7b35ac91d8 123 TIGRFAM TIGR00252 TIGR00252: TIGR00252 family protein 7 122 7.1E-35 T 22-04-2016 IPR003509 Uncharacterised protein family UPF0102 PP4_RS04260 0f9b768448a801263f3ece7b35ac91d8 123 PANTHER PTHR34039 2 122 1.8E-39 T 22-04-2016 PP4_RS04260 0f9b768448a801263f3ece7b35ac91d8 123 PANTHER PTHR34039:SF1 2 122 1.8E-39 T 22-04-2016 PP4_RS04260 0f9b768448a801263f3ece7b35ac91d8 123 Pfam PF02021 Uncharacterised protein family UPF0102 13 103 7.3E-27 T 22-04-2016 IPR003509 Uncharacterised protein family UPF0102 PP4_RS04260 0f9b768448a801263f3ece7b35ac91d8 123 Gene3D G3DSA:3.40.1350.10 13 122 5.0E-38 T 22-04-2016 IPR011856 tRNA endonuclease-like domain GO:0003676|GO:0004518 PP4_RS04260 0f9b768448a801263f3ece7b35ac91d8 123 SUPERFAMILY SSF52980 9 108 4.42E-20 T 22-04-2016 IPR011335 Restriction endonuclease type II-like PP4_RS18315 05571f24fef08a2a65917649d0554042 186 PANTHER PTHR39166 1 186 7.5E-41 T 22-04-2016 PP4_RS18315 05571f24fef08a2a65917649d0554042 186 Pfam PF06042 Nucleotidyltransferase 26 183 3.2E-33 T 22-04-2016 IPR009267 Putative nucleotidyltransferase PP4_RS11030 8d65381e20c04e104b28647321c8dcf9 187 ProSitePatterns PS00893 Nudix box signature. 74 95 - T 22-04-2016 IPR020084 NUDIX hydrolase, conserved site GO:0016787 PP4_RS11030 8d65381e20c04e104b28647321c8dcf9 187 PANTHER PTHR22769:SF17 6 169 1.3E-47 T 22-04-2016 PP4_RS11030 8d65381e20c04e104b28647321c8dcf9 187 Gene3D G3DSA:2.20.70.10 6 38 1.1E-11 T 22-04-2016 PP4_RS11030 8d65381e20c04e104b28647321c8dcf9 187 Gene3D G3DSA:3.90.79.10 40 166 6.8E-37 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PP4_RS11030 8d65381e20c04e104b28647321c8dcf9 187 Pfam PF14803 Nudix N-terminal 6 38 1.5E-12 T 22-04-2016 IPR029401 Nudix hydrolase, N-terminal KEGG: 00230+3.6.1.-+3.6.1.13|KEGG: 00332+3.6.1.-|KEGG: 00740+3.6.1.18|KEGG: 00790+3.6.1.- PP4_RS11030 8d65381e20c04e104b28647321c8dcf9 187 PRINTS PR00502 NUDIX hydrolase family signature 69 83 4.5E-8 T 22-04-2016 IPR020476 NUDIX hydrolase PP4_RS11030 8d65381e20c04e104b28647321c8dcf9 187 PRINTS PR00502 NUDIX hydrolase family signature 83 98 4.5E-8 T 22-04-2016 IPR020476 NUDIX hydrolase PP4_RS11030 8d65381e20c04e104b28647321c8dcf9 187 Pfam PF00293 NUDIX domain 45 158 2.2E-19 T 22-04-2016 IPR000086 NUDIX hydrolase domain GO:0016787 PP4_RS11030 8d65381e20c04e104b28647321c8dcf9 187 PANTHER PTHR22769 6 169 1.3E-47 T 22-04-2016 PP4_RS11030 8d65381e20c04e104b28647321c8dcf9 187 SUPERFAMILY SSF55811 6 166 1.9E-43 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PP4_RS26580 4a4a43e5e28228b3dcd3041379a7a45c 106 PANTHER PTHR34981 3 97 4.0E-24 T 22-04-2016 PP4_RS26580 4a4a43e5e28228b3dcd3041379a7a45c 106 PANTHER PTHR34981:SF1 3 97 4.0E-24 T 22-04-2016 PP4_RS26580 4a4a43e5e28228b3dcd3041379a7a45c 106 SUPERFAMILY SSF102829 7 98 8.63E-23 T 22-04-2016 IPR007838 Cell division protein ZapA-like PP4_RS26580 4a4a43e5e28228b3dcd3041379a7a45c 106 Pfam PF05164 Cell division protein ZapA 7 90 2.8E-23 T 22-04-2016 IPR007838 Cell division protein ZapA-like PP4_RS24975 c8c6f971edb5d75f0b4804864b3615c2 644 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 440 642 3.6E-42 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS24975 c8c6f971edb5d75f0b4804864b3615c2 644 SMART SM00304 313 367 1.7E-11 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS24975 c8c6f971edb5d75f0b4804864b3615c2 644 Gene3D G3DSA:1.10.287.950 400 612 1.3E-43 T 22-04-2016 PP4_RS24975 c8c6f971edb5d75f0b4804864b3615c2 644 SMART SM00283 393 643 3.8E-42 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS24975 c8c6f971edb5d75f0b4804864b3615c2 644 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 480 507 6.4E-19 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS24975 c8c6f971edb5d75f0b4804864b3615c2 644 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 509 538 6.4E-19 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS24975 c8c6f971edb5d75f0b4804864b3615c2 644 PRINTS PR00260 Bacterial chemotaxis sensory transducer signature 407 436 6.4E-19 T 22-04-2016 IPR004090 Chemotaxis methyl-accepting receptor GO:0004871|GO:0006935|GO:0007165|GO:0016020 PP4_RS24975 c8c6f971edb5d75f0b4804864b3615c2 644 PANTHER PTHR32089 109 240 4.2E-75 T 22-04-2016 PP4_RS24975 c8c6f971edb5d75f0b4804864b3615c2 644 PANTHER PTHR32089 287 644 4.2E-75 T 22-04-2016 PP4_RS24975 c8c6f971edb5d75f0b4804864b3615c2 644 Pfam PF00672 HAMP domain 295 363 8.6E-14 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS24975 c8c6f971edb5d75f0b4804864b3615c2 644 SUPERFAMILY SSF58104 399 643 2.35E-59 T 22-04-2016 PP4_RS24975 c8c6f971edb5d75f0b4804864b3615c2 644 SUPERFAMILY SSF58104 335 369 2.35E-59 T 22-04-2016 PP4_RS24805 12d0d830fb902052f1af6f97c3bae073 95 Pfam PF07769 psiF repeat 60 93 4.8E-20 T 22-04-2016 IPR011690 Phosphate-starvation-induced PsiF repeat PP4_RS24805 12d0d830fb902052f1af6f97c3bae073 95 Pfam PF07769 psiF repeat 24 56 1.3E-20 T 22-04-2016 IPR011690 Phosphate-starvation-induced PsiF repeat PP4_RS04835 794094e227c7192a68c9e0d46dbf822d 439 SUPERFAMILY SSF103473 26 434 7.46E-67 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS04835 794094e227c7192a68c9e0d46dbf822d 439 Pfam PF00083 Sugar (and other) transporter 32 240 3.9E-29 T 22-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 PP4_RS04835 794094e227c7192a68c9e0d46dbf822d 439 PANTHER PTHR23508:SF4 18 436 2.8E-253 T 22-04-2016 PP4_RS04835 794094e227c7192a68c9e0d46dbf822d 439 ProSitePatterns PS00217 Sugar transport proteins signature 2. 137 162 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PP4_RS04835 794094e227c7192a68c9e0d46dbf822d 439 PANTHER PTHR23508 18 436 2.8E-253 T 22-04-2016 PP4_RS04835 794094e227c7192a68c9e0d46dbf822d 439 Gene3D G3DSA:1.20.1250.20 244 433 3.2E-21 T 22-04-2016 PP4_RS04835 794094e227c7192a68c9e0d46dbf822d 439 Gene3D G3DSA:1.20.1250.20 26 236 1.8E-26 T 22-04-2016 PP4_RS04835 794094e227c7192a68c9e0d46dbf822d 439 ProSitePatterns PS00216 Sugar transport proteins signature 1. 303 320 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PP4_RS27400 3e60a9d47a2abeb6a97cf8bcb3a7bea0 289 PANTHER PTHR11410 27 125 3.6E-91 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 PP4_RS27400 3e60a9d47a2abeb6a97cf8bcb3a7bea0 289 PANTHER PTHR11410 143 289 3.6E-91 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 PP4_RS27400 3e60a9d47a2abeb6a97cf8bcb3a7bea0 289 Pfam PF00119 ATP synthase A chain 51 282 4.2E-55 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 PP4_RS27400 3e60a9d47a2abeb6a97cf8bcb3a7bea0 289 PANTHER PTHR11410:SF7 27 125 3.6E-91 T 22-04-2016 PP4_RS27400 3e60a9d47a2abeb6a97cf8bcb3a7bea0 289 PANTHER PTHR11410:SF7 143 289 3.6E-91 T 22-04-2016 PP4_RS27400 3e60a9d47a2abeb6a97cf8bcb3a7bea0 289 Gene3D G3DSA:1.20.120.220 102 287 3.6E-50 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 PP4_RS27400 3e60a9d47a2abeb6a97cf8bcb3a7bea0 289 ProSitePatterns PS00449 ATP synthase a subunit signature. 217 226 - T 22-04-2016 IPR023011 ATPase, F0 complex, subunit A, active site PP4_RS27400 3e60a9d47a2abeb6a97cf8bcb3a7bea0 289 TIGRFAM TIGR01131 ATP_synt_6_or_A: ATP synthase F0, A subunit 42 283 8.9E-42 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 PP4_RS27400 3e60a9d47a2abeb6a97cf8bcb3a7bea0 289 SUPERFAMILY SSF81336 100 282 3.14E-39 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 PP4_RS27400 3e60a9d47a2abeb6a97cf8bcb3a7bea0 289 Hamap MF_01393 ATP synthase subunit a [atpB]. 10 288 15.368 T 22-04-2016 IPR000568 ATPase, F0 complex, subunit A GO:0015078|GO:0015986 PP4_RS16430 888a3afc9d602e819d4ce34e1572caa6 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 22 33 8.1E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16430 888a3afc9d602e819d4ce34e1572caa6 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 43 54 8.1E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16430 888a3afc9d602e819d4ce34e1572caa6 311 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 33 43 8.1E-8 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16430 888a3afc9d602e819d4ce34e1572caa6 311 SUPERFAMILY SSF53850 92 303 6.52E-37 T 22-04-2016 PP4_RS16430 888a3afc9d602e819d4ce34e1572caa6 311 Pfam PF03466 LysR substrate binding domain 91 300 3.0E-34 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS16430 888a3afc9d602e819d4ce34e1572caa6 311 SUPERFAMILY SSF46785 8 90 4.03E-22 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16430 888a3afc9d602e819d4ce34e1572caa6 311 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 65 2.9E-20 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS16430 888a3afc9d602e819d4ce34e1572caa6 311 Gene3D G3DSA:1.10.10.10 7 88 1.1E-25 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS16430 888a3afc9d602e819d4ce34e1572caa6 311 PANTHER PTHR30537:SF5 1 301 1.2E-96 T 22-04-2016 PP4_RS16430 888a3afc9d602e819d4ce34e1572caa6 311 PANTHER PTHR30537 1 301 1.2E-96 T 22-04-2016 PP4_RS16430 888a3afc9d602e819d4ce34e1572caa6 311 Gene3D G3DSA:3.40.190.10 165 267 2.7E-25 T 22-04-2016 PP4_RS18760 ad465aec4560ee2572501bd77a190f76 73 PANTHER PTHR37011 2 73 1.9E-33 T 22-04-2016 PP4_RS18760 ad465aec4560ee2572501bd77a190f76 73 SUPERFAMILY SSF50182 22 72 2.78E-16 T 22-04-2016 IPR010920 LSM domain PP4_RS18760 ad465aec4560ee2572501bd77a190f76 73 PANTHER PTHR37011:SF1 2 73 1.9E-33 T 22-04-2016 PP4_RS18760 ad465aec4560ee2572501bd77a190f76 73 Gene3D G3DSA:2.30.30.100 21 73 4.2E-22 T 22-04-2016 PP4_RS18760 ad465aec4560ee2572501bd77a190f76 73 Pfam PF06004 Bacterial protein of unknown function (DUF903) 24 72 4.4E-21 T 22-04-2016 IPR010305 Protein of unknown function DUF903 PP4_RS24180 6cc53994b6c4ef2b938d203f42d0fba3 761 Pfam PF13361 UvrD-like helicase C-terminal domain 662 728 4.6E-15 T 22-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 PP4_RS24180 6cc53994b6c4ef2b938d203f42d0fba3 761 Pfam PF13361 UvrD-like helicase C-terminal domain 551 656 7.8E-9 T 22-04-2016 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 PP4_RS24180 6cc53994b6c4ef2b938d203f42d0fba3 761 Gene3D G3DSA:3.40.50.300 558 745 5.5E-35 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS24180 6cc53994b6c4ef2b938d203f42d0fba3 761 SUPERFAMILY SSF52540 261 410 1.38E-64 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS24180 6cc53994b6c4ef2b938d203f42d0fba3 761 SUPERFAMILY SSF52540 437 747 1.38E-64 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS24180 6cc53994b6c4ef2b938d203f42d0fba3 761 Gene3D G3DSA:3.40.50.300 267 367 2.2E-27 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS24180 6cc53994b6c4ef2b938d203f42d0fba3 761 Gene3D G3DSA:3.40.50.300 463 557 2.2E-27 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS24180 6cc53994b6c4ef2b938d203f42d0fba3 761 Pfam PF00580 UvrD/REP helicase N-terminal domain 269 533 9.9E-11 T 22-04-2016 IPR014016 UvrD-like Helicase, ATP-binding domain GO:0005524 PP4_RS24180 6cc53994b6c4ef2b938d203f42d0fba3 761 PANTHER PTHR11070 261 749 2.4E-43 T 22-04-2016 IPR000212 DNA helicase, UvrD/REP type GO:0003677|GO:0004003|GO:0005524 PP4_RS04445 736d56ea53919ca4a1d5768b1aba753b 242 Pfam PF01569 PAP2 superfamily 99 228 5.4E-18 T 22-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PP4_RS04445 736d56ea53919ca4a1d5768b1aba753b 242 Gene3D G3DSA:1.20.144.10 68 229 1.6E-8 T 22-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PP4_RS04445 736d56ea53919ca4a1d5768b1aba753b 242 SUPERFAMILY SSF48317 7 230 1.44E-13 T 22-04-2016 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase PP4_RS03720 e03d204ff9e686681c21144588e1079c 98 Pfam PF06844 Protein of unknown function (DUF1244) 27 93 3.7E-37 T 22-04-2016 IPR023163 SMc04008-like domain PP4_RS03720 e03d204ff9e686681c21144588e1079c 98 Gene3D G3DSA:1.10.3340.10 1 84 2.6E-44 T 22-04-2016 IPR023163 SMc04008-like domain PP4_RS03720 e03d204ff9e686681c21144588e1079c 98 SUPERFAMILY SSF158757 1 77 2.88E-38 T 22-04-2016 IPR023163 SMc04008-like domain PP4_RS14090 f5dee1248996f4ca42eb2b1b2a57cfbd 290 SUPERFAMILY SSF53474 12 288 4.05E-33 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS14090 f5dee1248996f4ca42eb2b1b2a57cfbd 290 PANTHER PTHR10992 155 290 2.3E-17 T 22-04-2016 PP4_RS14090 f5dee1248996f4ca42eb2b1b2a57cfbd 290 PANTHER PTHR10992 31 138 2.3E-17 T 22-04-2016 PP4_RS14090 f5dee1248996f4ca42eb2b1b2a57cfbd 290 Gene3D G3DSA:3.40.50.1820 12 289 1.6E-28 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS14090 f5dee1248996f4ca42eb2b1b2a57cfbd 290 Pfam PF12697 Alpha/beta hydrolase family 31 278 8.6E-15 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS11615 7ac6e8c8a18d20c28fff0ee89fbf16fc 79 SUPERFAMILY SSF141447 1 72 7.06E-27 T 22-04-2016 PP4_RS11615 7ac6e8c8a18d20c28fff0ee89fbf16fc 79 Pfam PF11462 Protein of unknown function (DUF3203) 1 73 8.0E-30 T 22-04-2016 IPR021564 Protein of unknown function DUF3203 PP4_RS06300 eb2ca410b0b29ad5f2148eab28f737a4 357 Pfam PF05359 Domain of Unknown Function (DUF748) 138 279 4.8E-11 T 22-04-2016 IPR008023 Protein of unknown function DUF748 PP4_RS21570 c93786e2e536cd00cb2c6671f21157e5 985 Pfam PF11647 C-terminal region of Pasteurella multocida toxin residues 569-1285 682 737 5.5E-6 T 22-04-2016 IPR020972 Dermonecrotic/RTX toxin C-terminal PP4_RS21570 c93786e2e536cd00cb2c6671f21157e5 985 SUPERFAMILY SSF159501 657 876 3.14E-49 T 22-04-2016 PP4_RS23470 35d41068d9b0f8956c2261e92d22332d 203 PANTHER PTHR36964 2 202 1.1E-61 T 22-04-2016 PP4_RS23470 35d41068d9b0f8956c2261e92d22332d 203 Pfam PF01794 Ferric reductase like transmembrane component 47 154 3.3E-15 T 22-04-2016 IPR013130 Ferric reductase transmembrane component-like domain PP4_RS23470 35d41068d9b0f8956c2261e92d22332d 203 Hamap MF_01207 Sulfoxide reductase heme-binding subunit YedZ [yedZ]. 1 200 24.369 T 22-04-2016 IPR022837 Protein-methionine-sulfoxide reductase subunit MsrQ GO:0005887|GO:0030091 PP4_RS09165 ce4273ff47b63ceb6a0d5f32d7a3a81e 349 SUPERFAMILY SSF56349 68 341 2.65E-41 T 22-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 PP4_RS09165 ce4273ff47b63ceb6a0d5f32d7a3a81e 349 Pfam PF00589 Phage integrase family 185 341 2.1E-8 T 22-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 PP4_RS09165 ce4273ff47b63ceb6a0d5f32d7a3a81e 349 Gene3D G3DSA:3.30.160.60 1 51 4.4E-6 T 22-04-2016 IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain GO:0003676 PP4_RS09165 ce4273ff47b63ceb6a0d5f32d7a3a81e 349 Gene3D G3DSA:1.10.443.10 175 342 3.0E-25 T 22-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 PP4_RS09165 ce4273ff47b63ceb6a0d5f32d7a3a81e 349 Gene3D G3DSA:1.10.150.130 68 165 2.6E-10 T 22-04-2016 IPR023109 Integrase/recombinase, N-terminal PP4_RS04430 dd6eccc60ed3320a09ebacdbaed067d0 153 Pfam PF04186 FxsA cytoplasmic membrane protein 6 113 1.6E-33 T 22-04-2016 IPR007313 FxsA cytoplasmic membrane protein GO:0016020 PP4_RS04430 dd6eccc60ed3320a09ebacdbaed067d0 153 PANTHER PTHR35335 1 152 6.2E-36 T 22-04-2016 PP4_RS04430 dd6eccc60ed3320a09ebacdbaed067d0 153 PANTHER PTHR35335:SF1 1 152 6.2E-36 T 22-04-2016 PP4_RS10540 77cfe95662823f72770051b66fca451a 631 Gene3D G3DSA:3.90.1310.10 132 250 1.9E-35 T 22-04-2016 PP4_RS10540 77cfe95662823f72770051b66fca451a 631 Gene3D G3DSA:3.40.710.10 251 609 3.6E-106 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS10540 77cfe95662823f72770051b66fca451a 631 SUPERFAMILY SSF56601 252 608 2.5E-99 T 22-04-2016 IPR012338 Beta-lactamase/transpeptidase-like PP4_RS10540 77cfe95662823f72770051b66fca451a 631 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 19 609 9.5E-226 T 22-04-2016 IPR017790 Penicillin-binding protein 2 GO:0016020 UniPathway: UPA00219 PP4_RS10540 77cfe95662823f72770051b66fca451a 631 PANTHER PTHR30627 5 612 8.4E-237 T 22-04-2016 PP4_RS10540 77cfe95662823f72770051b66fca451a 631 Pfam PF00905 Penicillin binding protein transpeptidase domain 269 605 1.6E-73 T 22-04-2016 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 PP4_RS10540 77cfe95662823f72770051b66fca451a 631 Pfam PF03717 Penicillin-binding Protein dimerisation domain 64 237 3.6E-43 T 22-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 PP4_RS10540 77cfe95662823f72770051b66fca451a 631 SUPERFAMILY SSF56519 56 251 1.57E-49 T 22-04-2016 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 PP4_RS10540 77cfe95662823f72770051b66fca451a 631 PANTHER PTHR30627:SF2 5 612 8.4E-237 T 22-04-2016 PP4_RS13890 3574d28abf2f0e369ff3dac4e9774e45 374 PANTHER PTHR11360 1 366 3.8E-44 T 22-04-2016 PP4_RS13890 3574d28abf2f0e369ff3dac4e9774e45 374 Gene3D G3DSA:1.20.1250.20 5 172 2.2E-11 T 22-04-2016 PP4_RS13890 3574d28abf2f0e369ff3dac4e9774e45 374 PANTHER PTHR11360:SF126 1 366 3.8E-44 T 22-04-2016 PP4_RS13890 3574d28abf2f0e369ff3dac4e9774e45 374 Gene3D G3DSA:1.20.1250.20 194 368 1.4E-5 T 22-04-2016 PP4_RS13890 3574d28abf2f0e369ff3dac4e9774e45 374 SUPERFAMILY SSF103473 5 370 8.37E-30 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS13890 3574d28abf2f0e369ff3dac4e9774e45 374 Pfam PF07690 Major Facilitator Superfamily 11 295 1.4E-13 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS18920 a111e6b8971b04dee8abd6c1f7dba223 274 PANTHER PTHR30221:SF7 1 274 1.2E-92 T 22-04-2016 PP4_RS18920 a111e6b8971b04dee8abd6c1f7dba223 274 Gene3D G3DSA:2.30.30.60 226 271 1.0E-9 T 22-04-2016 PP4_RS18920 a111e6b8971b04dee8abd6c1f7dba223 274 Pfam PF00924 Mechanosensitive ion channel 165 271 6.5E-10 T 22-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 PP4_RS18920 a111e6b8971b04dee8abd6c1f7dba223 274 PANTHER PTHR30221 1 274 1.2E-92 T 22-04-2016 PP4_RS18920 a111e6b8971b04dee8abd6c1f7dba223 274 SUPERFAMILY SSF50182 220 271 1.96E-6 T 22-04-2016 IPR010920 LSM domain PP4_RS18920 a111e6b8971b04dee8abd6c1f7dba223 274 Pfam PF05552 Conserved TM helix 109 154 1.1E-7 T 22-04-2016 IPR008910 Conserved TM helix PP4_RS18920 a111e6b8971b04dee8abd6c1f7dba223 274 Pfam PF05552 Conserved TM helix 15 60 3.0E-12 T 22-04-2016 IPR008910 Conserved TM helix PP4_RS21885 bfd16c7bd535f3eeddc00699bd792841 100 Gene3D G3DSA:3.30.750.24 13 98 1.3E-14 T 22-04-2016 IPR002645 STAS domain PP4_RS21885 bfd16c7bd535f3eeddc00699bd792841 100 SUPERFAMILY SSF52091 13 98 6.28E-16 T 22-04-2016 IPR002645 STAS domain PP4_RS21885 bfd16c7bd535f3eeddc00699bd792841 100 Pfam PF13466 STAS domain 14 95 1.2E-16 T 22-04-2016 IPR002645 STAS domain PP4_RS14955 77e6c58ac664b7cb6f5d9a70b65cc8ca 242 Pfam PF05988 Bacterial protein of unknown function (DUF899) 6 230 1.4E-90 T 22-04-2016 IPR010296 Protein of unknown function DUF899, thioredoxin-like PP4_RS14955 77e6c58ac664b7cb6f5d9a70b65cc8ca 242 Gene3D G3DSA:3.40.30.10 81 165 1.3E-6 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS14955 77e6c58ac664b7cb6f5d9a70b65cc8ca 242 SUPERFAMILY SSF52833 53 163 1.9E-8 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS10940 c91f79a293a873705332ae0eab884ad6 396 PANTHER PTHR32196 23 182 1.4E-108 T 22-04-2016 PP4_RS10940 c91f79a293a873705332ae0eab884ad6 396 PANTHER PTHR32196 242 395 1.4E-108 T 22-04-2016 PP4_RS10940 c91f79a293a873705332ae0eab884ad6 396 PANTHER PTHR32196:SF21 23 182 1.4E-108 T 22-04-2016 PP4_RS10940 c91f79a293a873705332ae0eab884ad6 396 PANTHER PTHR32196:SF21 242 395 1.4E-108 T 22-04-2016 PP4_RS10940 c91f79a293a873705332ae0eab884ad6 396 Pfam PF02653 Branched-chain amino acid transport system / permease component 52 386 7.9E-39 T 22-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 PP4_RS05330 eaa4d3f3f98f7f5fb087dd5f93d857c8 371 SUPERFAMILY SSF53187 18 110 7.28E-45 T 22-04-2016 PP4_RS05330 eaa4d3f3f98f7f5fb087dd5f93d857c8 371 SUPERFAMILY SSF53187 145 362 7.28E-45 T 22-04-2016 PP4_RS05330 eaa4d3f3f98f7f5fb087dd5f93d857c8 371 Gene3D G3DSA:3.40.630.10 17 268 4.3E-17 T 22-04-2016 PP4_RS05330 eaa4d3f3f98f7f5fb087dd5f93d857c8 371 Pfam PF04952 Succinylglutamate desuccinylase / Aspartoacylase family 29 358 2.2E-30 T 22-04-2016 IPR007036 Succinylglutamate desuccinylase/aspartoacylase GO:0008152|GO:0016788 PP4_RS15165 9c01a32e815ef33c6962840b5db57c5f 192 SUPERFAMILY SSF52218 4 190 4.53E-55 T 22-04-2016 IPR029039 Flavoprotein-like domain PP4_RS15165 9c01a32e815ef33c6962840b5db57c5f 192 Gene3D G3DSA:3.40.50.360 4 191 3.7E-49 T 22-04-2016 IPR029039 Flavoprotein-like domain PP4_RS15165 9c01a32e815ef33c6962840b5db57c5f 192 PANTHER PTHR10204 4 192 3.1E-57 T 22-04-2016 PP4_RS15165 9c01a32e815ef33c6962840b5db57c5f 192 Pfam PF02525 Flavodoxin-like fold 4 187 4.3E-40 T 22-04-2016 IPR003680 Flavodoxin-like fold PP4_RS15165 9c01a32e815ef33c6962840b5db57c5f 192 PANTHER PTHR10204:SF40 4 192 3.1E-57 T 22-04-2016 PP4_RS14880 dda6e6d7870df4023bfb859c37321b9e 203 Hamap MF_01216 FMN-dependent NADH-azoreductase [azoR]. 1 199 30.7 T 22-04-2016 IPR023048 NADH-azoreductase, FMN-dependent GO:0016661|GO:0055114 PP4_RS14880 dda6e6d7870df4023bfb859c37321b9e 203 Pfam PF02525 Flavodoxin-like fold 1 197 3.1E-47 T 22-04-2016 IPR003680 Flavodoxin-like fold PP4_RS14880 dda6e6d7870df4023bfb859c37321b9e 203 Gene3D G3DSA:3.40.50.360 1 196 2.7E-63 T 22-04-2016 IPR029039 Flavoprotein-like domain PP4_RS14880 dda6e6d7870df4023bfb859c37321b9e 203 PANTHER PTHR10204:SF37 1 203 3.3E-82 T 22-04-2016 PP4_RS14880 dda6e6d7870df4023bfb859c37321b9e 203 PANTHER PTHR10204 1 203 3.3E-82 T 22-04-2016 PP4_RS14880 dda6e6d7870df4023bfb859c37321b9e 203 SUPERFAMILY SSF52218 1 197 1.54E-55 T 22-04-2016 IPR029039 Flavoprotein-like domain PP4_RS03700 69680552cd2321b236abca633d699fba 177 Gene3D G3DSA:1.20.950.20 37 174 4.1E-9 T 22-04-2016 PP4_RS03700 69680552cd2321b236abca633d699fba 177 SUPERFAMILY SSF81342 5 175 1.73E-33 T 22-04-2016 IPR016174 Di-haem cytochrome, transmembrane GO:0016020|GO:0022904 PP4_RS03700 69680552cd2321b236abca633d699fba 177 Pfam PF01292 Prokaryotic cytochrome b561 10 171 4.7E-20 T 22-04-2016 IPR011577 Cytochrome b561, bacterial/Ni-hydrogenase GO:0009055|GO:0016021 PP4_RS26695 9d718c185cca46f160d3c38ad9c5745d 74 Pfam PF06945 Protein of unknown function (DUF1289) 22 65 3.8E-16 T 22-04-2016 IPR010710 Protein of unknown function DUF1289 PP4_RS23980 b0b03da4cab8f22055fb79d027aea8d9 218 Pfam PF06790 Uncharacterised protein family (UPF0259) 62 211 1.2E-8 T 22-04-2016 IPR009627 Uncharacterised protein family UPF0259 PP4_RS02870 8afa2353b37191001d68ff4b9f946426 205 SUPERFAMILY SSF142695 3 172 8.11E-64 T 22-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 PP4_RS02870 8afa2353b37191001d68ff4b9f946426 205 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 7 194 8.7E-79 T 22-04-2016 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 PP4_RS02870 8afa2353b37191001d68ff4b9f946426 205 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 1 196 45.415 T 22-04-2016 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 PP4_RS02870 8afa2353b37191001d68ff4b9f946426 205 PANTHER PTHR21327 3 201 1.7E-124 T 22-04-2016 PP4_RS02870 8afa2353b37191001d68ff4b9f946426 205 PANTHER PTHR21327:SF14 3 201 1.7E-124 T 22-04-2016 PP4_RS02870 8afa2353b37191001d68ff4b9f946426 205 Pfam PF00925 GTP cyclohydrolase II 6 170 3.6E-66 T 22-04-2016 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|UniPathway: UPA00275 PP4_RS26320 0ec2581e92698e500486f24c86629068 210 SMART SM00702 23 203 1.4E-32 T 22-04-2016 IPR006620 Prolyl 4-hydroxylase, alpha subunit GO:0005506|GO:0016705|GO:0031418|GO:0055114 PP4_RS26320 0ec2581e92698e500486f24c86629068 210 Pfam PF13640 2OG-Fe(II) oxygenase superfamily 114 203 6.6E-21 T 22-04-2016 IPR005123 Oxoglutarate/iron-dependent dioxygenase GO:0016491|GO:0055114 PP4_RS26320 0ec2581e92698e500486f24c86629068 210 PANTHER PTHR12907 12 205 1.0E-62 T 22-04-2016 PP4_RS26320 0ec2581e92698e500486f24c86629068 210 PANTHER PTHR12907:SF14 12 205 1.0E-62 T 22-04-2016 PP4_RS16235 9a687c6ca9f645b3d34f221fad2ebaff 496 Pfam PF10995 GGDEF I-site like or GIL domain 152 451 7.6E-87 T 22-04-2016 IPR017745 Cellulose biosynthesis protein BcsE PP4_RS26635 ac7673e5ba6d3a0e3cd442b678a2518d 104 Gene3D G3DSA:1.10.260.40 58 100 1.8E-4 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS26635 ac7673e5ba6d3a0e3cd442b678a2518d 104 TIGRFAM TIGR02684 dnstrm_HI1420: probable addiction module antidote protein 12 97 9.2E-18 T 22-04-2016 IPR014057 Addiction module antidote protein, HI1420 PP4_RS26635 ac7673e5ba6d3a0e3cd442b678a2518d 104 SUPERFAMILY SSF47413 44 100 6.12E-5 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS26635 ac7673e5ba6d3a0e3cd442b678a2518d 104 PANTHER PTHR40275 3 104 1.1E-14 T 22-04-2016 PP4_RS26635 ac7673e5ba6d3a0e3cd442b678a2518d 104 PANTHER PTHR40275:SF1 3 104 1.1E-14 T 22-04-2016 PP4_RS19100 c9145b7fd6d7601fdcb8a98823e56b74 295 PANTHER PTHR12128:SF34 1 294 6.9E-90 T 22-04-2016 PP4_RS19100 c9145b7fd6d7601fdcb8a98823e56b74 295 PIRSF PIRSF001365 1 295 1.4E-81 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS19100 c9145b7fd6d7601fdcb8a98823e56b74 295 SMART SM01130 5 294 1.3E-96 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS19100 c9145b7fd6d7601fdcb8a98823e56b74 295 Gene3D G3DSA:3.20.20.70 1 293 3.0E-93 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS19100 c9145b7fd6d7601fdcb8a98823e56b74 295 Pfam PF00701 Dihydrodipicolinate synthetase family 7 290 1.1E-54 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS19100 c9145b7fd6d7601fdcb8a98823e56b74 295 SUPERFAMILY SSF51569 2 293 5.86E-86 T 22-04-2016 PP4_RS19100 c9145b7fd6d7601fdcb8a98823e56b74 295 PRINTS PR00146 Dihydrodipicolinate synthase signature 107 123 3.3E-10 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS19100 c9145b7fd6d7601fdcb8a98823e56b74 295 PRINTS PR00146 Dihydrodipicolinate synthase signature 39 60 3.3E-10 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS19100 c9145b7fd6d7601fdcb8a98823e56b74 295 PRINTS PR00146 Dihydrodipicolinate synthase signature 75 93 3.3E-10 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS19100 c9145b7fd6d7601fdcb8a98823e56b74 295 PRINTS PR00146 Dihydrodipicolinate synthase signature 132 149 3.3E-10 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS19100 c9145b7fd6d7601fdcb8a98823e56b74 295 PANTHER PTHR12128 1 294 6.9E-90 T 22-04-2016 IPR002220 DapA-like GO:0008152|GO:0016829 PP4_RS09500 0a785a4b43871e459882d5d9690ecba7 250 PANTHER PTHR30060:SF1 4 250 3.6E-95 T 22-04-2016 PP4_RS09500 0a785a4b43871e459882d5d9690ecba7 250 Pfam PF03741 Integral membrane protein TerC family 19 210 3.6E-52 T 22-04-2016 IPR005496 Integral membrane protein TerC GO:0016021 PP4_RS09500 0a785a4b43871e459882d5d9690ecba7 250 PANTHER PTHR30060 4 250 3.6E-95 T 22-04-2016 PP4_RS03605 a19043fb4aac04078566291e0c40e82e 431 PIRSF PIRSF005353 1 430 1.5E-179 T 22-04-2016 IPR026033 Purine permease PbuG-like PP4_RS03605 a19043fb4aac04078566291e0c40e82e 431 Pfam PF00860 Permease family 17 391 2.0E-58 T 22-04-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 PP4_RS03605 a19043fb4aac04078566291e0c40e82e 431 PANTHER PTHR11119 1 418 1.4E-173 T 22-04-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 PP4_RS03605 a19043fb4aac04078566291e0c40e82e 431 PANTHER PTHR11119:SF9 1 418 1.4E-173 T 22-04-2016 IPR029940 AzgA purine transporter GO:0005345|GO:0006863 PP4_RS14085 16ae9da50facc7b01a3a76faa523ecfa 295 Pfam PF05726 Pirin C-terminal cupin domain 182 284 1.3E-29 T 22-04-2016 IPR008778 Pirin, C-terminal domain PP4_RS14085 16ae9da50facc7b01a3a76faa523ecfa 295 PANTHER PTHR13903 1 291 6.2E-152 T 22-04-2016 IPR012093 Pirin PP4_RS14085 16ae9da50facc7b01a3a76faa523ecfa 295 SUPERFAMILY SSF51182 3 289 1.81E-83 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS14085 16ae9da50facc7b01a3a76faa523ecfa 295 PANTHER PTHR13903:SF12 1 291 6.2E-152 T 22-04-2016 PP4_RS14085 16ae9da50facc7b01a3a76faa523ecfa 295 Gene3D G3DSA:2.60.120.10 7 257 1.3E-79 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS14085 16ae9da50facc7b01a3a76faa523ecfa 295 PIRSF PIRSF006232 2 291 1.6E-87 T 22-04-2016 IPR012093 Pirin PP4_RS14085 16ae9da50facc7b01a3a76faa523ecfa 295 Pfam PF02678 Pirin 22 127 5.6E-33 T 22-04-2016 IPR003829 Pirin, N-terminal domain PP4_RS13855 440af94ec33457a7b3caf0b3ceebb93b 367 SUPERFAMILY SSF56266 1 362 9.15E-111 T 22-04-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 PP4_RS13855 440af94ec33457a7b3caf0b3ceebb93b 367 PANTHER PTHR36512 1 362 1.6E-169 T 22-04-2016 PP4_RS13855 440af94ec33457a7b3caf0b3ceebb93b 367 Pfam PF03576 Peptidase family S58 19 345 7.1E-109 T 22-04-2016 IPR005321 Peptidase S58, DmpA PP4_RS13855 440af94ec33457a7b3caf0b3ceebb93b 367 Gene3D G3DSA:3.60.70.12 1 363 5.0E-129 T 22-04-2016 IPR016117 ArgJ-like domain KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154|UniPathway: UPA00068|UniPathway: UPA00068 PP4_RS13855 440af94ec33457a7b3caf0b3ceebb93b 367 PANTHER PTHR36512:SF1 1 362 1.6E-169 T 22-04-2016 PP4_RS03040 871b3ff56b81f1420501e51a13d702f6 333 SUPERFAMILY SSF56784 60 310 2.62E-22 T 22-04-2016 IPR023214 HAD-like domain PP4_RS03040 871b3ff56b81f1420501e51a13d702f6 333 Pfam PF12710 haloacid dehalogenase-like hydrolase 62 266 3.0E-26 T 22-04-2016 PP4_RS03040 871b3ff56b81f1420501e51a13d702f6 333 Gene3D G3DSA:3.40.50.1000 60 75 2.5E-14 T 22-04-2016 IPR023214 HAD-like domain PP4_RS03040 871b3ff56b81f1420501e51a13d702f6 333 Gene3D G3DSA:3.40.50.1000 158 298 2.5E-14 T 22-04-2016 IPR023214 HAD-like domain PP4_RS15200 37fe5f11bb7ce4a1d125dde08ef70adb 174 SUPERFAMILY SSF51182 22 141 1.21E-18 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS15200 37fe5f11bb7ce4a1d125dde08ef70adb 174 PIRSF PIRSF019307 3 174 1.9E-60 T 22-04-2016 IPR014500 Uncharacterised conserved protein UCP019307, cupin-type PP4_RS15200 37fe5f11bb7ce4a1d125dde08ef70adb 174 Gene3D G3DSA:2.60.120.10 22 133 1.0E-16 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS15200 37fe5f11bb7ce4a1d125dde08ef70adb 174 Pfam PF07883 Cupin domain 67 120 7.2E-7 T 22-04-2016 IPR013096 Cupin 2, conserved barrel PP4_RS15200 37fe5f11bb7ce4a1d125dde08ef70adb 174 PANTHER PTHR36448 1 174 3.4E-57 T 22-04-2016 PP4_RS15200 37fe5f11bb7ce4a1d125dde08ef70adb 174 PANTHER PTHR36448:SF2 1 174 3.4E-57 T 22-04-2016 PP4_RS12090 6f455569f18cddf6ef984ce6ebf75918 131 Pfam PF10627 Curli assembly protein CsgE 27 130 5.0E-38 T 22-04-2016 IPR018900 Curli assembly protein CsgE PP4_RS22025 0e4d7af5a354b451d56a28fe0598e473 334 TIGRFAM TIGR00219 mreC: rod shape-determining protein MreC 2 255 1.3E-59 T 22-04-2016 IPR007221 Rod shape-determining protein MreC GO:0008360 PP4_RS22025 0e4d7af5a354b451d56a28fe0598e473 334 PANTHER PTHR34138 1 325 5.0E-74 T 22-04-2016 PP4_RS22025 0e4d7af5a354b451d56a28fe0598e473 334 Pfam PF04085 rod shape-determining protein MreC 104 248 6.7E-35 T 22-04-2016 IPR007221 Rod shape-determining protein MreC GO:0008360 PP4_RS22025 0e4d7af5a354b451d56a28fe0598e473 334 PANTHER PTHR34138:SF1 1 325 5.0E-74 T 22-04-2016 PP4_RS14785 4d00c3498e090143c2ca877a13b5a80a 400 Pfam PF07690 Major Facilitator Superfamily 22 345 2.9E-34 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS14785 4d00c3498e090143c2ca877a13b5a80a 400 PANTHER PTHR23546:SF1 1 346 2.6E-53 T 22-04-2016 PP4_RS14785 4d00c3498e090143c2ca877a13b5a80a 400 SUPERFAMILY SSF103473 18 346 3.79E-42 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS14785 4d00c3498e090143c2ca877a13b5a80a 400 Gene3D G3DSA:1.20.1250.20 220 346 2.1E-6 T 22-04-2016 PP4_RS14785 4d00c3498e090143c2ca877a13b5a80a 400 Gene3D G3DSA:1.20.1250.20 20 205 4.2E-26 T 22-04-2016 PP4_RS14785 4d00c3498e090143c2ca877a13b5a80a 400 PANTHER PTHR23546 1 346 2.6E-53 T 22-04-2016 PP4_RS18600 feb402df752180e64a076a2ef56081b7 194 Gene3D G3DSA:2.40.10.220 106 187 6.0E-5 T 22-04-2016 PP4_RS18600 feb402df752180e64a076a2ef56081b7 194 Pfam PF07238 PilZ domain 76 177 2.8E-12 T 22-04-2016 IPR009875 PilZ domain GO:0035438 PP4_RS02010 06cc7424964dfea41bdb87d96f44b890 272 TIGRFAM TIGR02072 BioC: malonyl-acyl carrier protein O-methyltransferase BioC 22 269 4.0E-73 T 22-04-2016 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00670+2.1.1.19|KEGG: 00780+2.1.1.197|MetaCyc: PWY-2201|MetaCyc: PWY-6519|UniPathway: UPA00078 PP4_RS02010 06cc7424964dfea41bdb87d96f44b890 272 PANTHER PTHR10108:SF855 23 197 3.2E-41 T 22-04-2016 PP4_RS02010 06cc7424964dfea41bdb87d96f44b890 272 Pfam PF08241 Methyltransferase domain 58 152 9.5E-22 T 22-04-2016 IPR013216 Methyltransferase type 11 GO:0008152|GO:0008168 PP4_RS02010 06cc7424964dfea41bdb87d96f44b890 272 Gene3D G3DSA:3.40.50.150 44 271 3.6E-36 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS02010 06cc7424964dfea41bdb87d96f44b890 272 SUPERFAMILY SSF53335 20 270 4.14E-40 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS02010 06cc7424964dfea41bdb87d96f44b890 272 Hamap MF_00835 Malonyl-[acyl-carrier protein] O-methyltransferase [bioC]. 14 269 30.581 T 22-04-2016 IPR011814 Malonyl-[acyl-carrier protein] O-methyltransferase BioC GO:0009102|GO:0010340 KEGG: 00670+2.1.1.19|KEGG: 00780+2.1.1.197|MetaCyc: PWY-2201|MetaCyc: PWY-6519|UniPathway: UPA00078 PP4_RS02010 06cc7424964dfea41bdb87d96f44b890 272 PANTHER PTHR10108 23 197 3.2E-41 T 22-04-2016 PP4_RS18935 f16590e66370dbca301321229b06c48a 163 Gene3D G3DSA:3.50.30.40 3 159 2.8E-56 T 22-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein PP4_RS18935 f16590e66370dbca301321229b06c48a 163 Pfam PF03737 Demethylmenaquinone methyltransferase 6 154 4.5E-45 T 22-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein PP4_RS18935 f16590e66370dbca301321229b06c48a 163 SUPERFAMILY SSF89562 5 159 4.58E-52 T 22-04-2016 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein PP4_RS18935 f16590e66370dbca301321229b06c48a 163 PANTHER PTHR33254:SF7 3 161 1.7E-95 T 22-04-2016 PP4_RS18935 f16590e66370dbca301321229b06c48a 163 TIGRFAM TIGR01935 NOT-MenG: RraA family 6 155 2.0E-72 T 22-04-2016 IPR010203 Regulator of ribonuclease activity A GO:0008428|GO:0051252 PP4_RS18935 f16590e66370dbca301321229b06c48a 163 PANTHER PTHR33254 3 161 1.7E-95 T 22-04-2016 PP4_RS03915 187dbe438d9d626e154e8d60ce50302c 101 Pfam PF12365 Protein of unknown function (DUF3649) 68 91 4.2E-10 T 22-04-2016 IPR022109 Protein of unknown function DUF3649 PP4_RS04305 21a885dacdefb551e17cff69dc74dfd6 360 Pfam PF00953 Glycosyl transferase family 4 99 284 1.3E-36 T 22-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 PP4_RS04305 21a885dacdefb551e17cff69dc74dfd6 360 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 68 80 2.5E-5 T 22-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 PP4_RS04305 21a885dacdefb551e17cff69dc74dfd6 360 PANTHER PTHR22926:SF5 2 360 1.3E-180 T 22-04-2016 PP4_RS04305 21a885dacdefb551e17cff69dc74dfd6 360 PANTHER PTHR22926 2 360 1.3E-180 T 22-04-2016 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 PP4_RS04305 21a885dacdefb551e17cff69dc74dfd6 360 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 38 360 1.3E-140 T 22-04-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 PP4_RS04305 21a885dacdefb551e17cff69dc74dfd6 360 ProSitePatterns PS01348 MraY family signature 2. 189 200 - T 22-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 PP4_RS04305 21a885dacdefb551e17cff69dc74dfd6 360 Hamap MF_00038 Phospho-N-acetylmuramoyl-pentapeptide-transferase [mraY]. 25 358 24.565 T 22-04-2016 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 PP4_RS04305 21a885dacdefb551e17cff69dc74dfd6 360 ProSitePatterns PS01347 MraY family signature 1. 68 80 - T 22-04-2016 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|UniPathway: UPA00219 PP4_RS13525 7ba51d878de7a89e171f93492cbd25b4 796 PANTHER PTHR33406:SF2 129 772 2.4E-82 T 22-04-2016 PP4_RS13525 7ba51d878de7a89e171f93492cbd25b4 796 PANTHER PTHR33406:SF2 3 105 2.4E-82 T 22-04-2016 PP4_RS13525 7ba51d878de7a89e171f93492cbd25b4 796 Pfam PF03176 MMPL family 167 419 1.8E-8 T 22-04-2016 IPR004869 Membrane transport protein, MMPL domain GO:0016020 PP4_RS13525 7ba51d878de7a89e171f93492cbd25b4 796 Pfam PF03176 MMPL family 574 774 7.6E-17 T 22-04-2016 IPR004869 Membrane transport protein, MMPL domain GO:0016020 PP4_RS13525 7ba51d878de7a89e171f93492cbd25b4 796 Gene3D G3DSA:1.20.1640.10 194 387 1.3E-27 T 22-04-2016 PP4_RS13525 7ba51d878de7a89e171f93492cbd25b4 796 Gene3D G3DSA:1.20.1640.10 574 775 2.0E-29 T 22-04-2016 PP4_RS13525 7ba51d878de7a89e171f93492cbd25b4 796 SUPERFAMILY SSF82866 171 386 6.15E-27 T 22-04-2016 PP4_RS13525 7ba51d878de7a89e171f93492cbd25b4 796 PANTHER PTHR33406 129 772 2.4E-82 T 22-04-2016 PP4_RS13525 7ba51d878de7a89e171f93492cbd25b4 796 PANTHER PTHR33406 3 105 2.4E-82 T 22-04-2016 PP4_RS13525 7ba51d878de7a89e171f93492cbd25b4 796 SUPERFAMILY SSF82866 561 774 5.1E-35 T 22-04-2016 PP4_RS15955 ddc3d1eb592a4a759d86c5cc8977fc1d 263 Pfam PF01061 ABC-2 type transporter 11 226 1.9E-36 T 22-04-2016 IPR013525 ABC-2 type transporter GO:0016020 PP4_RS15955 ddc3d1eb592a4a759d86c5cc8977fc1d 263 TIGRFAM TIGR03861 phenyl_ABC_PedC: alcohol ABC transporter, permease protein 5 257 5.6E-146 T 22-04-2016 IPR022403 Alcohol ABC transporter, permease protein PP4_RS15955 ddc3d1eb592a4a759d86c5cc8977fc1d 263 PANTHER PTHR30294 11 250 1.4E-74 T 22-04-2016 PP4_RS15955 ddc3d1eb592a4a759d86c5cc8977fc1d 263 PIRSF PIRSF006648 10 256 3.2E-39 T 22-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 PP4_RS15955 ddc3d1eb592a4a759d86c5cc8977fc1d 263 PANTHER PTHR30294:SF13 11 250 1.4E-74 T 22-04-2016 PP4_RS15955 ddc3d1eb592a4a759d86c5cc8977fc1d 263 PRINTS PR00164 ABC-2 type transport system membrane protein signature 143 167 4.3E-9 T 22-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 PP4_RS15955 ddc3d1eb592a4a759d86c5cc8977fc1d 263 PRINTS PR00164 ABC-2 type transport system membrane protein signature 26 47 4.3E-9 T 22-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 PP4_RS15955 ddc3d1eb592a4a759d86c5cc8977fc1d 263 PRINTS PR00164 ABC-2 type transport system membrane protein signature 180 199 4.3E-9 T 22-04-2016 IPR000412 ABC-2 transporter GO:0006810|GO:0016020 PP4_RS10240 6f33d34a1fa7ee045adbc505d7fa1859 107 Pfam PF07867 Protein of unknown function (DUF1654) 16 84 2.1E-26 T 22-04-2016 IPR012449 Bacteriophage F116, Orf28 PP4_RS23525 dc26a6a73b784808b3bbbb33edd0d2bf 294 PIRSF PIRSF020419 1 294 1.7E-129 T 22-04-2016 IPR016773 Ferric uptake regulator, CjrA, predicted PP4_RS23525 dc26a6a73b784808b3bbbb33edd0d2bf 294 Pfam PF04187 Haem-binding uptake, Tiki superfamily, ChaN 58 248 4.2E-48 T 22-04-2016 IPR007314 Haem-binding uptake, Tiki superfamily, ChaN PP4_RS23525 dc26a6a73b784808b3bbbb33edd0d2bf 294 SUPERFAMILY SSF159501 38 280 4.45E-73 T 22-04-2016 PP4_RS21165 e442327ab62539ac9c33507aff1e232f 229 Pfam PF06904 Extensin-like protein C-terminus 58 229 6.4E-63 T 22-04-2016 IPR009683 Extensin-like, C-terminal PP4_RS20090 14e6809375f7e883a1778db56bd63329 282 SUPERFAMILY SSF53448 3 220 2.81E-6 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS20090 14e6809375f7e883a1778db56bd63329 282 Gene3D G3DSA:3.90.550.10 5 211 9.3E-4 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS12365 bedc4bc148c4d87e547e1d3f8387a1de 361 PANTHER PTHR37951:SF1 1 361 8.1E-28 T 22-04-2016 PP4_RS12365 bedc4bc148c4d87e547e1d3f8387a1de 361 PANTHER PTHR37951 1 361 8.1E-28 T 22-04-2016 PP4_RS12365 bedc4bc148c4d87e547e1d3f8387a1de 361 Pfam PF06812 ImpA, N-terminal, type VI secretion system 20 133 2.3E-29 T 22-04-2016 IPR010657 ImpA, N-terminal PP4_RS12365 bedc4bc148c4d87e547e1d3f8387a1de 361 TIGRFAM TIGR03363 VI_chp_8: type VI secretion-associated protein, ImpA family 9 359 1.2E-109 T 22-04-2016 IPR017740 Type VI secretion system-associated, ImpA PP4_RS12960 d476284a004f0996eeb5c500eef5d36f 1131 SUPERFAMILY SSF49503 286 381 8.65E-13 T 22-04-2016 IPR008972 Cupredoxin PP4_RS12960 d476284a004f0996eeb5c500eef5d36f 1131 SUPERFAMILY SSF49503 433 459 8.65E-13 T 22-04-2016 IPR008972 Cupredoxin PP4_RS12960 d476284a004f0996eeb5c500eef5d36f 1131 PANTHER PTHR11709:SF2 433 559 9.8E-23 T 22-04-2016 PP4_RS12960 d476284a004f0996eeb5c500eef5d36f 1131 PANTHER PTHR11709:SF2 581 600 9.8E-23 T 22-04-2016 PP4_RS12960 d476284a004f0996eeb5c500eef5d36f 1131 PANTHER PTHR11709:SF2 618 633 9.8E-23 T 22-04-2016 PP4_RS12960 d476284a004f0996eeb5c500eef5d36f 1131 PANTHER PTHR11709:SF2 669 922 9.8E-23 T 22-04-2016 PP4_RS12960 d476284a004f0996eeb5c500eef5d36f 1131 Gene3D G3DSA:2.60.40.420 487 651 1.5E-18 T 22-04-2016 IPR008972 Cupredoxin PP4_RS12960 d476284a004f0996eeb5c500eef5d36f 1131 Gene3D G3DSA:2.60.40.420 789 903 1.4E-19 T 22-04-2016 IPR008972 Cupredoxin PP4_RS12960 d476284a004f0996eeb5c500eef5d36f 1131 SUPERFAMILY SSF49503 815 906 1.3E-15 T 22-04-2016 IPR008972 Cupredoxin PP4_RS12960 d476284a004f0996eeb5c500eef5d36f 1131 SUPERFAMILY SSF49503 489 550 1.3E-15 T 22-04-2016 IPR008972 Cupredoxin PP4_RS12960 d476284a004f0996eeb5c500eef5d36f 1131 Pfam PF07731 Multicopper oxidase 800 890 3.0E-10 T 22-04-2016 IPR011706 Multicopper oxidase, type 2 GO:0005507|GO:0016491|GO:0055114 PP4_RS12960 d476284a004f0996eeb5c500eef5d36f 1131 Gene3D G3DSA:2.60.40.420 433 453 5.8E-10 T 22-04-2016 IPR008972 Cupredoxin PP4_RS12960 d476284a004f0996eeb5c500eef5d36f 1131 Gene3D G3DSA:2.60.40.420 289 381 5.8E-10 T 22-04-2016 IPR008972 Cupredoxin PP4_RS12960 d476284a004f0996eeb5c500eef5d36f 1131 PANTHER PTHR11709 433 559 9.8E-23 T 22-04-2016 PP4_RS12960 d476284a004f0996eeb5c500eef5d36f 1131 PANTHER PTHR11709 581 600 9.8E-23 T 22-04-2016 PP4_RS12960 d476284a004f0996eeb5c500eef5d36f 1131 PANTHER PTHR11709 618 633 9.8E-23 T 22-04-2016 PP4_RS12960 d476284a004f0996eeb5c500eef5d36f 1131 PANTHER PTHR11709 669 922 9.8E-23 T 22-04-2016 PP4_RS09105 b84567ad08d7097ee2241e1ced3ed6ed 130 Pfam PF13488 Glycine zipper 75 117 1.3E-5 T 22-04-2016 PP4_RS24440 74d1016b30e862077a44b8643366686d 86 Pfam PF11275 Protein of unknown function (DUF3077) 8 81 3.1E-16 T 22-04-2016 IPR021427 Protein of unknown function DUF3077 PP4_RS17880 e60f10e2cdc7c4883b30452c1478b5e4 452 Pfam PF07044 Protein of unknown function (DUF1329) 84 446 5.4E-129 T 22-04-2016 IPR010752 Protein of unknown function DUF1329 PP4_RS17880 e60f10e2cdc7c4883b30452c1478b5e4 452 Gene3D G3DSA:2.50.20.10 159 308 1.1E-33 T 22-04-2016 PP4_RS17880 e60f10e2cdc7c4883b30452c1478b5e4 452 Gene3D G3DSA:2.50.20.10 340 392 1.1E-33 T 22-04-2016 PP4_RS03170 09dec572ab0caedb3fb946e58f5eadca 449 Pfam PF08245 Mur ligase middle domain 108 291 4.8E-20 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PP4_RS03170 09dec572ab0caedb3fb946e58f5eadca 449 Gene3D G3DSA:3.40.50.720 1 90 2.9E-41 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS03170 09dec572ab0caedb3fb946e58f5eadca 449 SUPERFAMILY SSF53623 94 309 7.06E-51 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PP4_RS03170 09dec572ab0caedb3fb946e58f5eadca 449 Gene3D G3DSA:3.90.190.20 313 448 5.0E-34 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PP4_RS03170 09dec572ab0caedb3fb946e58f5eadca 449 PANTHER PTHR23135:SF17 1 439 3.0E-275 T 22-04-2016 PP4_RS03170 09dec572ab0caedb3fb946e58f5eadca 449 TIGRFAM TIGR01081 mpl: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 2 449 3.9E-219 T 22-04-2016 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 UniPathway: UPA00544 PP4_RS03170 09dec572ab0caedb3fb946e58f5eadca 449 Pfam PF01225 Mur ligase family, catalytic domain 2 100 3.8E-20 T 22-04-2016 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 UniPathway: UPA00219 PP4_RS03170 09dec572ab0caedb3fb946e58f5eadca 449 SUPERFAMILY SSF53244 311 448 4.71E-37 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PP4_RS03170 09dec572ab0caedb3fb946e58f5eadca 449 SUPERFAMILY SSF51984 1 90 3.79E-24 T 22-04-2016 PP4_RS03170 09dec572ab0caedb3fb946e58f5eadca 449 PANTHER PTHR23135 1 439 3.0E-275 T 22-04-2016 PP4_RS03170 09dec572ab0caedb3fb946e58f5eadca 449 Pfam PF02875 Mur ligase family, glutamate ligase domain 311 359 5.8E-10 T 22-04-2016 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 UniPathway: UPA00219 PP4_RS03170 09dec572ab0caedb3fb946e58f5eadca 449 Gene3D G3DSA:3.40.1190.10 92 312 9.4E-86 T 22-04-2016 IPR013221 Mur ligase, central GO:0005524|GO:0009058 UniPathway: UPA00219 PP4_RS03170 09dec572ab0caedb3fb946e58f5eadca 449 Hamap MF_02020 UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase [mpl]. 1 449 60.397 T 22-04-2016 IPR005757 Murein peptide ligase GO:0009252|GO:0016881|GO:0071555 UniPathway: UPA00544 PP4_RS11105 962711ed62f6f562f48073a16137630b 303 PANTHER PTHR11019:SF77 1 299 1.0E-65 T 22-04-2016 PP4_RS11105 962711ed62f6f562f48073a16137630b 303 Pfam PF12833 Helix-turn-helix domain 222 299 3.5E-18 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS11105 962711ed62f6f562f48073a16137630b 303 SMART SM00342 215 297 2.7E-24 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS11105 962711ed62f6f562f48073a16137630b 303 Pfam PF12852 Cupin 11 183 7.2E-35 T 22-04-2016 IPR032783 AraC-type transcription regulator, ligand-binding domain PP4_RS11105 962711ed62f6f562f48073a16137630b 303 SUPERFAMILY SSF46689 251 300 4.93E-10 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS11105 962711ed62f6f562f48073a16137630b 303 Gene3D G3DSA:2.60.120.280 26 182 3.1E-6 T 22-04-2016 IPR003313 AraC-type arabinose-binding/dimerisation domain GO:0006355 PP4_RS11105 962711ed62f6f562f48073a16137630b 303 PANTHER PTHR11019 1 299 1.0E-65 T 22-04-2016 PP4_RS11105 962711ed62f6f562f48073a16137630b 303 Gene3D G3DSA:1.10.10.60 207 253 4.5E-8 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS11105 962711ed62f6f562f48073a16137630b 303 Gene3D G3DSA:1.10.10.60 254 300 2.0E-14 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS13310 60a2838cb58d7297273e271e6b81fa9c 102 PANTHER PTHR33215 1 102 6.1E-52 T 22-04-2016 PP4_RS13310 60a2838cb58d7297273e271e6b81fa9c 102 Gene3D G3DSA:1.10.10.60 9 92 1.9E-21 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS13310 60a2838cb58d7297273e271e6b81fa9c 102 Pfam PF01527 Transposase 3 75 2.8E-18 T 22-04-2016 IPR002514 Transposase IS3/IS911family GO:0003677|GO:0004803|GO:0006313 PP4_RS13310 60a2838cb58d7297273e271e6b81fa9c 102 PANTHER PTHR33215:SF4 1 102 6.1E-52 T 22-04-2016 PP4_RS13310 60a2838cb58d7297273e271e6b81fa9c 102 SUPERFAMILY SSF46689 5 95 1.13E-18 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS26885 9469b2e229c4a82163c35d07983f0e0f 117 Pfam PF03692 Putative zinc- or iron-chelating domain 19 81 3.1E-10 T 22-04-2016 IPR005358 Putative zinc- or iron-chelating domain containing protein PP4_RS26885 9469b2e229c4a82163c35d07983f0e0f 117 PIRSF PIRSF029611 1 117 2.1E-71 T 22-04-2016 IPR016928 Uncharacterised conserved protein UCP029611 PP4_RS24470 0dbb4fa8edb387001663d86fdcfa1891 108 Pfam PF08850 Domain of unknown function (DUF1820) 8 103 3.5E-44 T 22-04-2016 IPR014949 Protein of unknown function DUF1820 PP4_RS24470 0dbb4fa8edb387001663d86fdcfa1891 108 PIRSF PIRSF028538 2 108 7.9E-52 T 22-04-2016 IPR014949 Protein of unknown function DUF1820 PP4_RS24595 e0ab5d67ae1bce0d3809f3aea9af9148 222 PANTHER PTHR10429 1 216 1.6E-49 T 22-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 PP4_RS24595 e0ab5d67ae1bce0d3809f3aea9af9148 222 Pfam PF02245 Methylpurine-DNA glycosylase (MPG) 7 193 3.0E-36 T 22-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 PP4_RS24595 e0ab5d67ae1bce0d3809f3aea9af9148 222 Gene3D G3DSA:3.10.300.10 3 207 3.9E-44 T 22-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 PP4_RS24595 e0ab5d67ae1bce0d3809f3aea9af9148 222 PANTHER PTHR10429:SF0 1 216 1.6E-49 T 22-04-2016 PP4_RS24595 e0ab5d67ae1bce0d3809f3aea9af9148 222 Hamap MF_00527 Putative 3-methyladenine DNA glycosylase. 6 200 23.856 T 22-04-2016 IPR003180 Methylpurine-DNA glycosylase (MPG) GO:0003677|GO:0003905|GO:0006284 PP4_RS24595 e0ab5d67ae1bce0d3809f3aea9af9148 222 SUPERFAMILY SSF50486 2 207 4.16E-55 T 22-04-2016 IPR011034 Formyl transferase, C-terminal-like GO:0003824 PP4_RS03895 bd890d4bf3cb9d2f8063b4063b761694 115 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 7 101 2.6E-9 T 22-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 PP4_RS03895 bd890d4bf3cb9d2f8063b4063b761694 115 Gene3D G3DSA:3.30.160.100 1 103 2.9E-10 T 22-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 PP4_RS03895 bd890d4bf3cb9d2f8063b4063b761694 115 SUPERFAMILY SSF69754 1 95 1.44E-9 T 22-04-2016 IPR003489 Ribosomal protein S30Ae/sigma 54 modulation protein GO:0044238 PP4_RS06195 84bd3378c8d4950343e396c209928469 149 PIRSF PIRSF006173 1 149 1.2E-67 T 22-04-2016 IPR008228 Uncharacterised conserved protein UCP006173 PP4_RS06195 84bd3378c8d4950343e396c209928469 149 PANTHER PTHR37421 2 149 4.5E-65 T 22-04-2016 PP4_RS06195 84bd3378c8d4950343e396c209928469 149 Pfam PF03692 Putative zinc- or iron-chelating domain 26 93 6.3E-9 T 22-04-2016 IPR005358 Putative zinc- or iron-chelating domain containing protein PP4_RS06195 84bd3378c8d4950343e396c209928469 149 Hamap MF_00676 UPF0260 protein YcgN [ycgN]. 4 149 41.047 T 22-04-2016 IPR008228 Uncharacterised conserved protein UCP006173 PP4_RS06195 84bd3378c8d4950343e396c209928469 149 PANTHER PTHR37421:SF1 2 149 4.5E-65 T 22-04-2016 PP4_RS20275 c7f2b1247a19ddaf836c1d490fea7a2d 59 SUPERFAMILY SSF117130 1 53 9.15E-18 T 22-04-2016 PP4_RS20275 c7f2b1247a19ddaf836c1d490fea7a2d 59 PANTHER PTHR34984:SF1 1 56 1.3E-15 T 22-04-2016 PP4_RS20275 c7f2b1247a19ddaf836c1d490fea7a2d 59 PANTHER PTHR34984 1 56 1.3E-15 T 22-04-2016 PP4_RS20275 c7f2b1247a19ddaf836c1d490fea7a2d 59 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 56 5.9E-21 T 22-04-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 PP4_RS20275 c7f2b1247a19ddaf836c1d490fea7a2d 59 Pfam PF02599 Global regulator protein family 1 53 3.1E-20 T 22-04-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 PP4_RS20275 c7f2b1247a19ddaf836c1d490fea7a2d 59 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 16 49 5.0E-8 T 22-04-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 PP4_RS06495 b860a0c26dab3703782d84fba559d52c 435 PANTHER PTHR13847:SF215 10 432 2.8E-251 T 22-04-2016 PP4_RS06495 b860a0c26dab3703782d84fba559d52c 435 Pfam PF01266 FAD dependent oxidoreductase 37 390 7.5E-50 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PP4_RS06495 b860a0c26dab3703782d84fba559d52c 435 SUPERFAMILY SSF51905 36 263 7.45E-40 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS06495 b860a0c26dab3703782d84fba559d52c 435 SUPERFAMILY SSF51905 354 411 7.45E-40 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS06495 b860a0c26dab3703782d84fba559d52c 435 PANTHER PTHR13847 10 432 2.8E-251 T 22-04-2016 PP4_RS06495 b860a0c26dab3703782d84fba559d52c 435 Gene3D G3DSA:3.50.50.60 22 129 2.2E-47 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS06495 b860a0c26dab3703782d84fba559d52c 435 Gene3D G3DSA:3.50.50.60 354 410 2.2E-47 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS06495 b860a0c26dab3703782d84fba559d52c 435 Gene3D G3DSA:3.50.50.60 183 262 2.2E-47 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS06985 949770a782335c064a913a4c390ee9f9 247 Gene3D G3DSA:2.40.10.220 122 246 2.3E-45 T 22-04-2016 PP4_RS06985 949770a782335c064a913a4c390ee9f9 247 Pfam PF07238 PilZ domain 121 234 1.2E-10 T 22-04-2016 IPR009875 PilZ domain GO:0035438 PP4_RS06985 949770a782335c064a913a4c390ee9f9 247 Hamap MF_01457 Flagellar brake protein YcgR [ycgR]. 7 243 22.868 T 22-04-2016 IPR023787 Type III secretion system flagellar brake protein YcgR GO:0035438|GO:0071945 PP4_RS06985 949770a782335c064a913a4c390ee9f9 247 Pfam PF07317 Flagellar regulator YcgR 14 118 1.1E-24 T 22-04-2016 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal PP4_RS06985 949770a782335c064a913a4c390ee9f9 247 SUPERFAMILY SSF141371 139 234 3.14E-5 T 22-04-2016 PP4_RS06985 949770a782335c064a913a4c390ee9f9 247 Gene3D G3DSA:2.30.110.10 11 121 4.0E-53 T 22-04-2016 IPR012349 FMN-binding split barrel GO:0010181|GO:0016491|GO:0055114 UniPathway: UPA00647 PP4_RS19890 7e4599f7af5b0441874798ff3330e9c1 90 Pfam PF12021 Protein of unknown function (DUF3509) 4 85 1.1E-32 T 22-04-2016 IPR021898 Protein of unknown function DUF3509 PP4_RS19740 527c340b08ecdeb9f803709fa5714758 251 Pfam PF01564 Spermine/spermidine synthase 60 173 1.9E-4 T 22-04-2016 PP4_RS19740 527c340b08ecdeb9f803709fa5714758 251 PANTHER PTHR11558 7 173 7.0E-12 T 22-04-2016 PP4_RS19740 527c340b08ecdeb9f803709fa5714758 251 SUPERFAMILY SSF53335 5 201 1.43E-39 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS19740 527c340b08ecdeb9f803709fa5714758 251 Gene3D G3DSA:3.40.50.150 8 238 1.9E-48 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS09120 bbe24a6085bcf69a66fd21a6cef03504 96 ProDom PD456999 SIGNAL PRECURSOR TRANSMEMBRANE MEMBRANE YOHN INTEGRAL EXPORTED SIMILAR LIPOPROTEIN LIPOPROTEIN 25 90 1.0E-29 T 22-04-2016 IPR024572 Nickel/cobalt homeostasis protein RcnB PP4_RS09120 bbe24a6085bcf69a66fd21a6cef03504 96 Pfam PF11776 Nickel/cobalt transporter regulator 41 90 5.5E-20 T 22-04-2016 IPR024572 Nickel/cobalt homeostasis protein RcnB PP4_RS09775 6c77bb5a7765eeca3113e33c3bb51cac 428 PANTHER PTHR38733:SF1 1 408 7.9E-70 T 22-04-2016 PP4_RS09775 6c77bb5a7765eeca3113e33c3bb51cac 428 Pfam PF10117 McrBC 5-methylcytosine restriction system component 58 381 4.9E-99 T 22-04-2016 IPR019292 5-methylcytosine restriction system component PP4_RS09775 6c77bb5a7765eeca3113e33c3bb51cac 428 PANTHER PTHR38733 1 408 7.9E-70 T 22-04-2016 PP4_RS03725 900eba31efd848f2aeca5878ef0b881a 230 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 175 5.0E-10 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03725 900eba31efd848f2aeca5878ef0b881a 230 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 138 157 5.0E-10 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03725 900eba31efd848f2aeca5878ef0b881a 230 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 4 21 5.0E-10 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03725 900eba31efd848f2aeca5878ef0b881a 230 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 70 81 5.0E-10 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03725 900eba31efd848f2aeca5878ef0b881a 230 SUPERFAMILY SSF51735 5 226 7.25E-35 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS03725 900eba31efd848f2aeca5878ef0b881a 230 Gene3D G3DSA:3.40.50.720 5 225 5.3E-39 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS03725 900eba31efd848f2aeca5878ef0b881a 230 PANTHER PTHR24322:SF211 7 122 5.3E-23 T 22-04-2016 PP4_RS03725 900eba31efd848f2aeca5878ef0b881a 230 PANTHER PTHR24322:SF211 138 169 5.3E-23 T 22-04-2016 PP4_RS03725 900eba31efd848f2aeca5878ef0b881a 230 PANTHER PTHR24322 7 122 5.3E-23 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03725 900eba31efd848f2aeca5878ef0b881a 230 PANTHER PTHR24322 138 169 5.3E-23 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS03725 900eba31efd848f2aeca5878ef0b881a 230 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 125 153 - T 22-04-2016 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 PP4_RS03725 900eba31efd848f2aeca5878ef0b881a 230 Pfam PF00106 short chain dehydrogenase 5 169 1.7E-21 T 22-04-2016 IPR002347 Short-chain dehydrogenase/reductase SDR PP4_RS07240 5e49bde73af917c54d9536d9ef9c21e9 322 Pfam PF02154 Flagellar motor switch protein FliM 38 229 1.2E-72 T 22-04-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 PP4_RS07240 5e49bde73af917c54d9536d9ef9c21e9 322 PRINTS PR00955 Flagellar motor switch protein FliM signature 89 105 1.4E-20 T 22-04-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 PP4_RS07240 5e49bde73af917c54d9536d9ef9c21e9 322 PRINTS PR00955 Flagellar motor switch protein FliM signature 211 229 1.4E-20 T 22-04-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 PP4_RS07240 5e49bde73af917c54d9536d9ef9c21e9 322 PRINTS PR00955 Flagellar motor switch protein FliM signature 4 17 1.4E-20 T 22-04-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 PP4_RS07240 5e49bde73af917c54d9536d9ef9c21e9 322 PRINTS PR00955 Flagellar motor switch protein FliM signature 114 133 1.4E-20 T 22-04-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 PP4_RS07240 5e49bde73af917c54d9536d9ef9c21e9 322 Gene3D G3DSA:2.30.330.10 240 320 8.0E-11 T 22-04-2016 PP4_RS07240 5e49bde73af917c54d9536d9ef9c21e9 322 TIGRFAM TIGR01397 fliM_switch: flagellar motor switch protein FliM 5 319 1.7E-106 T 22-04-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 PP4_RS07240 5e49bde73af917c54d9536d9ef9c21e9 322 PIRSF PIRSF002888 3 322 5.8E-89 T 22-04-2016 IPR001689 Flagellar motor switch protein FliM GO:0003774|GO:0009425|GO:0071973 PP4_RS07240 5e49bde73af917c54d9536d9ef9c21e9 322 SUPERFAMILY SSF103039 55 230 8.89E-17 T 22-04-2016 IPR028976 CheC-like domain PP4_RS07240 5e49bde73af917c54d9536d9ef9c21e9 322 SUPERFAMILY SSF103039 6 15 8.89E-17 T 22-04-2016 IPR028976 CheC-like domain PP4_RS07240 5e49bde73af917c54d9536d9ef9c21e9 322 Pfam PF01052 Type III flagellar switch regulator (C-ring) FliN C-term 251 319 3.3E-19 T 22-04-2016 IPR001543 Surface presentation of antigen (SpoA) PP4_RS07240 5e49bde73af917c54d9536d9ef9c21e9 322 SUPERFAMILY SSF101801 247 321 3.66E-16 T 22-04-2016 IPR001543 Surface presentation of antigen (SpoA) PP4_RS25025 3ba91023a7c1f23142a5d2e7c5682576 157 Gene3D G3DSA:3.40.50.300 5 151 1.3E-46 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25025 3ba91023a7c1f23142a5d2e7c5682576 157 PANTHER PTHR33540 3 155 1.1E-44 T 22-04-2016 PP4_RS25025 3ba91023a7c1f23142a5d2e7c5682576 157 SUPERFAMILY SSF52540 29 127 7.84E-25 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS25025 3ba91023a7c1f23142a5d2e7c5682576 157 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 9 130 2.9E-38 T 22-04-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 PP4_RS25025 3ba91023a7c1f23142a5d2e7c5682576 157 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 8 138 1.3E-46 T 22-04-2016 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 PP4_RS16275 029aab8c7ced1000e71544e7803ff2ad 378 Pfam PF01266 FAD dependent oxidoreductase 7 348 7.8E-62 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PP4_RS16275 029aab8c7ced1000e71544e7803ff2ad 378 SUPERFAMILY SSF54373 229 307 1.96E-6 T 22-04-2016 PP4_RS16275 029aab8c7ced1000e71544e7803ff2ad 378 Gene3D G3DSA:3.30.9.10 87 139 3.9E-14 T 22-04-2016 PP4_RS16275 029aab8c7ced1000e71544e7803ff2ad 378 Gene3D G3DSA:3.30.9.10 219 306 3.9E-14 T 22-04-2016 PP4_RS16275 029aab8c7ced1000e71544e7803ff2ad 378 SUPERFAMILY SSF51905 310 370 2.59E-57 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS16275 029aab8c7ced1000e71544e7803ff2ad 378 SUPERFAMILY SSF51905 6 219 2.59E-57 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS16275 029aab8c7ced1000e71544e7803ff2ad 378 PANTHER PTHR13847 3 367 3.0E-58 T 22-04-2016 PP4_RS16275 029aab8c7ced1000e71544e7803ff2ad 378 Gene3D G3DSA:3.50.50.60 140 218 2.7E-59 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS16275 029aab8c7ced1000e71544e7803ff2ad 378 Gene3D G3DSA:3.50.50.60 4 82 2.7E-59 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS16275 029aab8c7ced1000e71544e7803ff2ad 378 Gene3D G3DSA:3.50.50.60 310 369 2.7E-59 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS05450 aca09f7831be1861a2fb167a5e91d385 154 PANTHER PTHR35603 2 153 1.3E-44 T 22-04-2016 PP4_RS05450 aca09f7831be1861a2fb167a5e91d385 154 Pfam PF05433 Glycine zipper 2TM domain 61 101 3.5E-6 T 22-04-2016 IPR008816 Glycine zipper 2TM domain GO:0019867 PP4_RS05450 aca09f7831be1861a2fb167a5e91d385 154 PANTHER PTHR35603:SF1 2 153 1.3E-44 T 22-04-2016 PP4_RS07055 735bddafb0d22e4b8b9149f8ddd3f1c9 369 PRINTS PR01010 Flagellar P-ring protein signature 59 74 3.3E-89 T 22-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 PP4_RS07055 735bddafb0d22e4b8b9149f8ddd3f1c9 369 PRINTS PR01010 Flagellar P-ring protein signature 125 143 3.3E-89 T 22-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 PP4_RS07055 735bddafb0d22e4b8b9149f8ddd3f1c9 369 PRINTS PR01010 Flagellar P-ring protein signature 86 105 3.3E-89 T 22-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 PP4_RS07055 735bddafb0d22e4b8b9149f8ddd3f1c9 369 PRINTS PR01010 Flagellar P-ring protein signature 192 210 3.3E-89 T 22-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 PP4_RS07055 735bddafb0d22e4b8b9149f8ddd3f1c9 369 PRINTS PR01010 Flagellar P-ring protein signature 256 268 3.3E-89 T 22-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 PP4_RS07055 735bddafb0d22e4b8b9149f8ddd3f1c9 369 PRINTS PR01010 Flagellar P-ring protein signature 39 54 3.3E-89 T 22-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 PP4_RS07055 735bddafb0d22e4b8b9149f8ddd3f1c9 369 PRINTS PR01010 Flagellar P-ring protein signature 108 125 3.3E-89 T 22-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 PP4_RS07055 735bddafb0d22e4b8b9149f8ddd3f1c9 369 PRINTS PR01010 Flagellar P-ring protein signature 166 184 3.3E-89 T 22-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 PP4_RS07055 735bddafb0d22e4b8b9149f8ddd3f1c9 369 PRINTS PR01010 Flagellar P-ring protein signature 24 39 3.3E-89 T 22-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 PP4_RS07055 735bddafb0d22e4b8b9149f8ddd3f1c9 369 Pfam PF02119 Flagellar P-ring protein 24 368 1.9E-143 T 22-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 PP4_RS07055 735bddafb0d22e4b8b9149f8ddd3f1c9 369 PANTHER PTHR30381:SF1 1 369 4.0E-219 T 22-04-2016 PP4_RS07055 735bddafb0d22e4b8b9149f8ddd3f1c9 369 PANTHER PTHR30381 1 369 4.0E-219 T 22-04-2016 PP4_RS07055 735bddafb0d22e4b8b9149f8ddd3f1c9 369 Hamap MF_00416 Flagellar P-ring protein [flgI]. 5 369 41.17 T 22-04-2016 IPR001782 Flagellar P-ring protein GO:0005198|GO:0009428|GO:0030288|GO:0071973 PP4_RS04125 94561be3cfe033247907eeba7eca6d85 218 PANTHER PTHR10655 1 217 2.5E-58 T 22-04-2016 PP4_RS04125 94561be3cfe033247907eeba7eca6d85 218 Gene3D G3DSA:3.40.50.1820 3 217 2.1E-64 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS04125 94561be3cfe033247907eeba7eca6d85 218 SUPERFAMILY SSF53474 10 217 1.46E-47 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS04125 94561be3cfe033247907eeba7eca6d85 218 Pfam PF02230 Phospholipase/Carboxylesterase 3 214 1.1E-45 T 22-04-2016 IPR003140 Phospholipase/carboxylesterase/thioesterase GO:0016787 PP4_RS13400 ddf104f67d3ab7e0ae5d01b8133a1af8 269 SUPERFAMILY SSF53474 17 264 1.03E-34 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS13400 ddf104f67d3ab7e0ae5d01b8133a1af8 269 Pfam PF12697 Alpha/beta hydrolase family 35 257 1.1E-19 T 22-04-2016 IPR000073 Alpha/beta hydrolase fold-1 PP4_RS13400 ddf104f67d3ab7e0ae5d01b8133a1af8 269 PANTHER PTHR10992 6 267 3.8E-22 T 22-04-2016 PP4_RS13400 ddf104f67d3ab7e0ae5d01b8133a1af8 269 Gene3D G3DSA:3.40.50.1820 27 264 1.0E-33 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS05585 41d0ed1c4120925c200bbf450cff732c 298 Pfam PF01226 Formate/nitrite transporter 35 267 1.5E-44 T 22-04-2016 IPR000292 Formate/nitrite transporter GO:0005215|GO:0006810|GO:0016020 PP4_RS05585 41d0ed1c4120925c200bbf450cff732c 298 PANTHER PTHR30520 13 272 2.5E-140 T 22-04-2016 PP4_RS05585 41d0ed1c4120925c200bbf450cff732c 298 Gene3D G3DSA:1.20.1080.10 46 272 5.3E-49 T 22-04-2016 IPR023271 Aquaporin-like PP4_RS05585 41d0ed1c4120925c200bbf450cff732c 298 PANTHER PTHR30520:SF2 13 272 2.5E-140 T 22-04-2016 PP4_RS07425 39423dfce9d7895f498eca7264817618 112 SUPERFAMILY SSF54534 3 107 1.67E-40 T 22-04-2016 PP4_RS07425 39423dfce9d7895f498eca7264817618 112 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 17 105 3.0E-31 T 22-04-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 PP4_RS07425 39423dfce9d7895f498eca7264817618 112 Gene3D G3DSA:3.10.50.40 3 107 5.3E-43 T 22-04-2016 PP4_RS07425 39423dfce9d7895f498eca7264817618 112 PANTHER PTHR10516 5 112 1.7E-49 T 22-04-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type PP4_RS22635 5f6e513d4bbdf8ddd64823925979a063 718 Pfam PF07793 Protein of unknown function (DUF1631) 22 712 1.8E-206 T 22-04-2016 IPR012434 Protein of unknown function DUF1631 PP4_RS15400 72203abae812ed02c4e49350d36f2394 277 PANTHER PTHR42194 3 276 4.9E-64 T 22-04-2016 PP4_RS15400 72203abae812ed02c4e49350d36f2394 277 SUPERFAMILY SSF51658 30 210 2.3E-9 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PP4_RS15400 72203abae812ed02c4e49350d36f2394 277 Gene3D G3DSA:3.20.20.150 7 272 8.7E-94 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PP4_RS15400 72203abae812ed02c4e49350d36f2394 277 PANTHER PTHR42194:SF1 3 276 4.9E-64 T 22-04-2016 PP4_RS15400 72203abae812ed02c4e49350d36f2394 277 Pfam PF05114 Protein of unknown function (DUF692) 8 270 1.6E-96 T 22-04-2016 IPR007801 Uncharacterised protein family UPF0276 PP4_RS05740 081dd0e1e220e105b13f8b814c3c361f 448 SMART SM00388 238 300 7.2E-5 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS05740 081dd0e1e220e105b13f8b814c3c361f 448 PRINTS PR00344 Bacterial sensor protein C-terminal signature 409 427 3.3E-6 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS05740 081dd0e1e220e105b13f8b814c3c361f 448 PRINTS PR00344 Bacterial sensor protein C-terminal signature 378 392 3.3E-6 T 22-04-2016 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 PP4_RS05740 081dd0e1e220e105b13f8b814c3c361f 448 SUPERFAMILY SSF55874 307 445 4.06E-29 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS05740 081dd0e1e220e105b13f8b814c3c361f 448 SUPERFAMILY SSF47384 221 294 3.34E-7 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS05740 081dd0e1e220e105b13f8b814c3c361f 448 PANTHER PTHR24423 180 445 6.1E-97 T 22-04-2016 PP4_RS05740 081dd0e1e220e105b13f8b814c3c361f 448 SMART SM00387 343 448 5.9E-20 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS05740 081dd0e1e220e105b13f8b814c3c361f 448 Gene3D G3DSA:3.30.565.10 306 445 2.6E-29 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS05740 081dd0e1e220e105b13f8b814c3c361f 448 Pfam PF00512 His Kinase A (phospho-acceptor) domain 243 296 4.7E-7 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS05740 081dd0e1e220e105b13f8b814c3c361f 448 PANTHER PTHR24423:SF496 180 445 6.1E-97 T 22-04-2016 PP4_RS05740 081dd0e1e220e105b13f8b814c3c361f 448 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 346 447 2.8E-12 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS05740 081dd0e1e220e105b13f8b814c3c361f 448 Pfam PF00672 HAMP domain 167 232 7.1E-7 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS05740 081dd0e1e220e105b13f8b814c3c361f 448 Gene3D G3DSA:1.10.287.130 234 289 1.8E-6 T 22-04-2016 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 PP4_RS25185 6ba05a3b8cf7f3948361db111be9bb0b 322 Gene3D G3DSA:3.90.79.10 45 121 6.7E-4 T 22-04-2016 IPR015797 NUDIX hydrolase domain-like GO:0016787 PP4_RS00395 db938fa9d8eda5a55f3da50ebe34885b 334 Pfam PF00296 Luciferase-like monooxygenase 17 306 1.4E-40 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS00395 db938fa9d8eda5a55f3da50ebe34885b 334 PANTHER PTHR30137:SF2 1 330 6.9E-138 T 22-04-2016 PP4_RS00395 db938fa9d8eda5a55f3da50ebe34885b 334 PANTHER PTHR30137 1 330 6.9E-138 T 22-04-2016 PP4_RS00395 db938fa9d8eda5a55f3da50ebe34885b 334 TIGRFAM TIGR03558 oxido_grp_1: luciferase family oxidoreductase, group 1 9 330 2.2E-130 T 22-04-2016 IPR019949 Luciferase family oxidoreductase, group 1 PP4_RS00395 db938fa9d8eda5a55f3da50ebe34885b 334 SUPERFAMILY SSF51679 7 329 6.54E-89 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS00395 db938fa9d8eda5a55f3da50ebe34885b 334 Gene3D G3DSA:3.20.20.30 1 330 1.8E-92 T 22-04-2016 IPR011251 Luciferase-like domain GO:0016705|GO:0055114 PP4_RS06070 1c6e10c8b2a978017b26447b4cae7c66 321 PANTHER PTHR30273:SF3 6 320 6.6E-86 T 22-04-2016 PP4_RS06070 1c6e10c8b2a978017b26447b4cae7c66 321 PANTHER PTHR30273 6 320 6.6E-86 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS06070 1c6e10c8b2a978017b26447b4cae7c66 321 Pfam PF04773 FecR protein 116 208 6.7E-20 T 22-04-2016 IPR006860 FecR protein PP4_RS06070 1c6e10c8b2a978017b26447b4cae7c66 321 Pfam PF16220 Domain of unknown function (DUF4880) 14 56 5.0E-9 T 22-04-2016 IPR032623 FecR, N-terminal PP4_RS06070 1c6e10c8b2a978017b26447b4cae7c66 321 PIRSF PIRSF018266 3 321 4.0E-83 T 22-04-2016 IPR012373 Fe(2+)-dicitrate sensor, transmembrane component PP4_RS10895 a9421f593fa44ccf3fa83f43c15b6eba 356 SUPERFAMILY SSF56796 11 352 2.36E-92 T 22-04-2016 PP4_RS10895 a9421f593fa44ccf3fa83f43c15b6eba 356 Pfam PF00465 Iron-containing alcohol dehydrogenase 12 341 6.7E-78 T 22-04-2016 IPR001670 Alcohol dehydrogenase, iron-type GO:0016491|GO:0046872|GO:0055114 PP4_RS10895 a9421f593fa44ccf3fa83f43c15b6eba 356 PANTHER PTHR11496 1 355 8.3E-130 T 22-04-2016 PP4_RS10895 a9421f593fa44ccf3fa83f43c15b6eba 356 PANTHER PTHR11496:SF76 1 355 8.3E-130 T 22-04-2016 PP4_RS10895 a9421f593fa44ccf3fa83f43c15b6eba 356 Gene3D G3DSA:1.20.1090.10 162 351 1.1E-46 T 22-04-2016 PP4_RS10895 a9421f593fa44ccf3fa83f43c15b6eba 356 Gene3D G3DSA:3.40.50.1970 8 159 5.2E-35 T 22-04-2016 PP4_RS07665 6bd2a30c64f44336e9ffb5c40ac1577e 247 SMART SM00062 13 237 0.0031 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS07665 6bd2a30c64f44336e9ffb5c40ac1577e 247 SUPERFAMILY SSF53850 10 236 2.06E-28 T 22-04-2016 PP4_RS07665 6bd2a30c64f44336e9ffb5c40ac1577e 247 Gene3D G3DSA:3.40.190.10 196 235 1.6E-9 T 22-04-2016 PP4_RS07665 6bd2a30c64f44336e9ffb5c40ac1577e 247 Gene3D G3DSA:3.40.190.10 24 101 1.6E-9 T 22-04-2016 PP4_RS07665 6bd2a30c64f44336e9ffb5c40ac1577e 247 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 25 235 3.1E-14 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS08435 646244a57fdf89c4b29fb3db6ed87351 143 Gene3D G3DSA:3.40.630.30 1 132 4.6E-22 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS08435 646244a57fdf89c4b29fb3db6ed87351 143 Pfam PF00583 Acetyltransferase (GNAT) family 56 126 4.7E-11 T 22-04-2016 IPR000182 GNAT domain GO:0008080 PP4_RS08435 646244a57fdf89c4b29fb3db6ed87351 143 SUPERFAMILY SSF55729 1 135 6.75E-23 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS22085 393c9ba82cb8c8a334f40d50f264016f 541 SUPERFAMILY SSF53850 28 539 1.28E-142 T 22-04-2016 PP4_RS22085 393c9ba82cb8c8a334f40d50f264016f 541 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 76 98 - T 22-04-2016 IPR023765 Solute-binding protein family 5, conserved site PP4_RS22085 393c9ba82cb8c8a334f40d50f264016f 541 Gene3D G3DSA:3.10.105.10 288 510 6.0E-62 T 22-04-2016 PP4_RS22085 393c9ba82cb8c8a334f40d50f264016f 541 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 71 458 2.1E-96 T 22-04-2016 IPR000914 Solute-binding protein family 5 domain PP4_RS22085 393c9ba82cb8c8a334f40d50f264016f 541 PIRSF PIRSF002741 17 538 2.4E-108 T 22-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 PP4_RS22085 393c9ba82cb8c8a334f40d50f264016f 541 PANTHER PTHR30290:SF14 20 541 5.6E-200 T 22-04-2016 PP4_RS22085 393c9ba82cb8c8a334f40d50f264016f 541 PANTHER PTHR30290 20 541 5.6E-200 T 22-04-2016 PP4_RS22085 393c9ba82cb8c8a334f40d50f264016f 541 Gene3D G3DSA:3.90.76.10 36 216 2.9E-49 T 22-04-2016 PP4_RS26770 ad8693576b611d798656c5498643e32b 595 Pfam PF02254 TrkA-N domain 409 520 1.2E-22 T 22-04-2016 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 PP4_RS26770 ad8693576b611d798656c5498643e32b 595 Pfam PF00999 Sodium/hydrogen exchanger family 12 378 2.0E-66 T 22-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 PP4_RS26770 ad8693576b611d798656c5498643e32b 595 PANTHER PTHR16254:SF6 1 563 1.8E-224 T 22-04-2016 PP4_RS26770 ad8693576b611d798656c5498643e32b 595 Gene3D G3DSA:3.40.50.720 401 536 6.3E-34 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS26770 ad8693576b611d798656c5498643e32b 595 TIGRFAM TIGR00932 2a37: transporter, monovalent cation:proton antiporter-2 (CPA2) family 15 286 2.1E-86 T 22-04-2016 IPR004771 K+/H+ exchanger GO:0006812|GO:0008324|GO:0016021 PP4_RS26770 ad8693576b611d798656c5498643e32b 595 SUPERFAMILY SSF51735 407 543 4.4E-28 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS26770 ad8693576b611d798656c5498643e32b 595 PANTHER PTHR16254 1 563 1.8E-224 T 22-04-2016 PP4_RS12100 9396a74ae4007ad0eb05bf414f47d624 283 Pfam PF03783 Curli production assembly/transport component CsgG 50 262 2.2E-79 T 22-04-2016 IPR005534 Curli production assembly/transport component CsgG GO:0030288 PP4_RS01675 5c0f20bee66ba02cc8e63114747c6733 156 SUPERFAMILY SSF54637 1 155 1.09E-42 T 22-04-2016 IPR029069 HotDog domain PP4_RS01675 5c0f20bee66ba02cc8e63114747c6733 156 Gene3D G3DSA:3.10.129.10 1 139 6.7E-51 T 22-04-2016 IPR029069 HotDog domain PP4_RS01675 5c0f20bee66ba02cc8e63114747c6733 156 PANTHER PTHR31793:SF2 1 147 2.2E-52 T 22-04-2016 PP4_RS01675 5c0f20bee66ba02cc8e63114747c6733 156 Pfam PF13279 Thioesterase-like superfamily 13 124 2.4E-17 T 22-04-2016 PP4_RS01675 5c0f20bee66ba02cc8e63114747c6733 156 PANTHER PTHR31793 1 147 2.2E-52 T 22-04-2016 PP4_RS19705 1d3480502edfefea6afde6a70512da25 162 SUPERFAMILY SSF52833 5 160 4.4E-55 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS19705 1d3480502edfefea6afde6a70512da25 162 PIRSF PIRSF000303 1 162 6.5E-61 T 22-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 PP4_RS19705 1d3480502edfefea6afde6a70512da25 162 Gene3D G3DSA:3.40.30.10 4 161 2.8E-64 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS19705 1d3480502edfefea6afde6a70512da25 162 ProSitePatterns PS00460 Glutathione peroxidases active site. 25 40 - T 22-04-2016 IPR029759 Glutathione peroxidase active site PP4_RS19705 1d3480502edfefea6afde6a70512da25 162 PANTHER PTHR11592 1 162 6.4E-75 T 22-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 PP4_RS19705 1d3480502edfefea6afde6a70512da25 162 ProSitePatterns PS00763 Glutathione peroxidases signature 2. 61 68 - T 22-04-2016 IPR029760 Glutathione peroxidase conserved site PP4_RS19705 1d3480502edfefea6afde6a70512da25 162 PRINTS PR01011 Glutathione peroxidase family signature 124 133 1.6E-20 T 22-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 PP4_RS19705 1d3480502edfefea6afde6a70512da25 162 PRINTS PR01011 Glutathione peroxidase family signature 23 40 1.6E-20 T 22-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 PP4_RS19705 1d3480502edfefea6afde6a70512da25 162 PRINTS PR01011 Glutathione peroxidase family signature 58 74 1.6E-20 T 22-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 PP4_RS19705 1d3480502edfefea6afde6a70512da25 162 Pfam PF00255 Glutathione peroxidase 7 112 9.6E-37 T 22-04-2016 IPR000889 Glutathione peroxidase GO:0004602|GO:0006979|GO:0055114 PP4_RS09905 648dfd58e7dbbf15d1cbf4351512fa33 425 TIGRFAM TIGR01326 OAH_OAS_sulfhy: O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase 2 421 1.3E-209 T 22-04-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 PP4_RS09905 648dfd58e7dbbf15d1cbf4351512fa33 425 Gene3D G3DSA:3.40.640.10 2 285 2.4E-124 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS09905 648dfd58e7dbbf15d1cbf4351512fa33 425 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 196 210 - T 22-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 PP4_RS09905 648dfd58e7dbbf15d1cbf4351512fa33 425 PIRSF PIRSF001434 1 424 2.8E-135 T 22-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 PP4_RS09905 648dfd58e7dbbf15d1cbf4351512fa33 425 PANTHER PTHR11808 264 425 4.3E-252 T 22-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 PP4_RS09905 648dfd58e7dbbf15d1cbf4351512fa33 425 PANTHER PTHR11808 1 234 4.3E-252 T 22-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 PP4_RS09905 648dfd58e7dbbf15d1cbf4351512fa33 425 SUPERFAMILY SSF53383 1 421 4.34E-133 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS09905 648dfd58e7dbbf15d1cbf4351512fa33 425 Gene3D G3DSA:3.90.1150.10 287 422 3.0E-50 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS09905 648dfd58e7dbbf15d1cbf4351512fa33 425 PANTHER PTHR11808:SF12 264 425 4.3E-252 T 22-04-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 PP4_RS09905 648dfd58e7dbbf15d1cbf4351512fa33 425 PANTHER PTHR11808:SF12 1 234 4.3E-252 T 22-04-2016 IPR006235 O-acetylhomoserine/O-acetylserine sulfhydrylase GO:0006520|GO:0016765 KEGG: 00270+2.5.1.49|MetaCyc: PWY-5344|MetaCyc: PWY-7174 PP4_RS09905 648dfd58e7dbbf15d1cbf4351512fa33 425 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 4 421 2.4E-146 T 22-04-2016 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 PP4_RS13270 ef90bc9012d30e587addb81f117c01c1 420 SUPERFAMILY SSF53335 22 362 5.25E-86 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS13270 ef90bc9012d30e587addb81f117c01c1 420 Gene3D G3DSA:3.40.50.150 130 404 1.7E-90 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS13270 ef90bc9012d30e587addb81f117c01c1 420 Pfam PF02353 Mycolic acid cyclopropane synthetase 134 403 6.2E-85 T 22-04-2016 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase PP4_RS13270 ef90bc9012d30e587addb81f117c01c1 420 PANTHER PTHR10108:SF795 343 405 1.4E-106 T 22-04-2016 PP4_RS13270 ef90bc9012d30e587addb81f117c01c1 420 PANTHER PTHR10108:SF795 68 322 1.4E-106 T 22-04-2016 PP4_RS13270 ef90bc9012d30e587addb81f117c01c1 420 PIRSF PIRSF003085 21 417 2.4E-130 T 22-04-2016 IPR003333 Mycolic acid cyclopropane synthase GO:0008610 PP4_RS13270 ef90bc9012d30e587addb81f117c01c1 420 PANTHER PTHR10108 343 405 1.4E-106 T 22-04-2016 PP4_RS13270 ef90bc9012d30e587addb81f117c01c1 420 PANTHER PTHR10108 68 322 1.4E-106 T 22-04-2016 PP4_RS15720 209a5dc1d32ff039c360040800771c9e 376 SUPERFAMILY SSF56935 47 376 2.9E-38 T 22-04-2016 PP4_RS15720 209a5dc1d32ff039c360040800771c9e 376 Gene3D G3DSA:2.40.160.10 49 376 2.8E-37 T 22-04-2016 IPR023614 Porin domain PP4_RS15720 209a5dc1d32ff039c360040800771c9e 376 Pfam PF13609 Gram-negative porin 15 345 5.7E-22 T 22-04-2016 PP4_RS15195 da7ed8265c592523b74463cfa2d7aede 153 Pfam PF11663 Toxin with endonuclease activity, of toxin-antitoxin system 8 144 4.6E-57 T 22-04-2016 IPR021679 Toxin endonuclease, YhaV PP4_RS04500 8cbb89d44b11f651c2335c651a5cb868 354 Pfam PF09375 Imelysin 37 332 6.5E-51 T 22-04-2016 PP4_RS25235 6a838398ab08bca56f91cdda8649a47a 376 Pfam PF00534 Glycosyl transferases group 1 185 339 2.9E-29 T 22-04-2016 IPR001296 Glycosyl transferase, family 1 PP4_RS25235 6a838398ab08bca56f91cdda8649a47a 376 Gene3D G3DSA:3.40.50.2000 163 340 3.4E-31 T 22-04-2016 PP4_RS25235 6a838398ab08bca56f91cdda8649a47a 376 SUPERFAMILY SSF53756 8 366 5.02E-64 T 22-04-2016 PP4_RS25235 6a838398ab08bca56f91cdda8649a47a 376 Pfam PF13439 Glycosyltransferase Family 4 29 173 5.6E-9 T 22-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain PP4_RS25235 6a838398ab08bca56f91cdda8649a47a 376 PANTHER PTHR12526 143 366 2.0E-49 T 22-04-2016 PP4_RS07740 f05c07abc85fccad810d4040cca2b52d 480 TIGRFAM TIGR00780 ccoN: cytochrome c oxidase, cbb3-type, subunit I 9 472 3.6E-227 T 22-04-2016 IPR004677 Cytochrome c oxidase cbb3-type, subunit I GO:0004129|GO:0045278|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS07740 f05c07abc85fccad810d4040cca2b52d 480 Gene3D G3DSA:1.20.210.10 9 469 1.1E-70 T 22-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS07740 f05c07abc85fccad810d4040cca2b52d 480 PANTHER PTHR10422:SF21 8 467 0.0 T 22-04-2016 PP4_RS07740 f05c07abc85fccad810d4040cca2b52d 480 ProSitePatterns PS00077 Heme-copper oxidase catalytic subunit, copper B binding region signature. 204 259 - T 22-04-2016 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS07740 f05c07abc85fccad810d4040cca2b52d 480 Pfam PF00115 Cytochrome C and Quinol oxidase polypeptide I 13 443 1.2E-114 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS07740 f05c07abc85fccad810d4040cca2b52d 480 SUPERFAMILY SSF81442 9 468 2.49E-123 T 22-04-2016 IPR023616 Cytochrome c oxidase, subunit I domain GO:0004129|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS07740 f05c07abc85fccad810d4040cca2b52d 480 PANTHER PTHR10422 8 467 0.0 T 22-04-2016 IPR000883 Cytochrome c oxidase subunit I GO:0004129|GO:0005506|GO:0009055|GO:0009060|GO:0016021|GO:0020037|GO:0055114 KEGG: 00190+1.9.3.1|MetaCyc: PWY-3781|MetaCyc: PWY-4521|MetaCyc: PWY-6692|MetaCyc: PWY-7279|UniPathway: UPA00705 PP4_RS01275 7077b7ec2eb840ef358c296a7dc92fcd 277 PANTHER PTHR30468 1 277 1.3E-99 T 22-04-2016 PP4_RS01275 7077b7ec2eb840ef358c296a7dc92fcd 277 Gene3D G3DSA:3.60.130.10 2 277 2.5E-97 T 22-04-2016 PP4_RS01275 7077b7ec2eb840ef358c296a7dc92fcd 277 PANTHER PTHR30468:SF2 1 277 1.3E-99 T 22-04-2016 PP4_RS01275 7077b7ec2eb840ef358c296a7dc92fcd 277 SUPERFAMILY SSF51197 3 277 2.93E-96 T 22-04-2016 PP4_RS01275 7077b7ec2eb840ef358c296a7dc92fcd 277 Pfam PF02668 Taurine catabolism dioxygenase TauD, TfdA family 5 270 5.5E-67 T 22-04-2016 IPR003819 TauD/TfdA-like domain GO:0016491|GO:0055114 Reactome: REACT_13 PP4_RS27065 14c3bd7aacc05a043e63d787cbb6d895 124 Gene3D G3DSA:3.30.1050.10 16 120 8.3E-7 T 22-04-2016 IPR003033 SCP2 sterol-binding domain PP4_RS27065 14c3bd7aacc05a043e63d787cbb6d895 124 SUPERFAMILY SSF55718 12 116 9.42E-7 T 22-04-2016 IPR003033 SCP2 sterol-binding domain PP4_RS21985 79dd6ee665a54caf7372c436d903aa62 448 SUPERFAMILY SSF111283 15 447 1.05E-124 T 22-04-2016 PP4_RS21985 79dd6ee665a54caf7372c436d903aa62 448 PANTHER PTHR30624 7 448 4.3E-180 T 22-04-2016 PP4_RS21985 79dd6ee665a54caf7372c436d903aa62 448 Pfam PF01523 Putative modulator of DNA gyrase 34 325 1.3E-53 T 22-04-2016 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PP4_RS21985 79dd6ee665a54caf7372c436d903aa62 448 PANTHER PTHR30624:SF1 7 448 4.3E-180 T 22-04-2016 PP4_RS12385 2367c131a2c58120a8ed209371441695 1265 Pfam PF06761 Intracellular multiplication and human macrophage-killing 492 876 1.7E-50 T 22-04-2016 IPR009612 ImcF-related PP4_RS12385 2367c131a2c58120a8ed209371441695 1265 Pfam PF06744 Type VI secretion protein IcmF C-terminal 1016 1210 4.3E-38 T 22-04-2016 IPR010623 Type VI secretion system IcmF, C-terminal PP4_RS12385 2367c131a2c58120a8ed209371441695 1265 PANTHER PTHR36153:SF1 12 553 8.4E-119 T 22-04-2016 PP4_RS12385 2367c131a2c58120a8ed209371441695 1265 PANTHER PTHR36153:SF1 632 1210 8.4E-119 T 22-04-2016 PP4_RS12385 2367c131a2c58120a8ed209371441695 1265 Pfam PF14331 ImcF-related N-terminal domain 181 429 3.4E-57 T 22-04-2016 IPR025743 ImcF-related, N-terminal domain PP4_RS12385 2367c131a2c58120a8ed209371441695 1265 SUPERFAMILY SSF52540 125 274 7.64E-8 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS12385 2367c131a2c58120a8ed209371441695 1265 PANTHER PTHR36153 12 553 8.4E-119 T 22-04-2016 PP4_RS12385 2367c131a2c58120a8ed209371441695 1265 PANTHER PTHR36153 632 1210 8.4E-119 T 22-04-2016 PP4_RS05320 c11f526c11feba0187930ed8125fc2d8 216 PIRSF PIRSF000887 6 207 1.9E-56 T 22-04-2016 IPR024173 Phosphoesterase, MJ0037 PP4_RS05320 c11f526c11feba0187930ed8125fc2d8 216 PANTHER PTHR39323 5 216 2.5E-32 T 22-04-2016 PP4_RS05320 c11f526c11feba0187930ed8125fc2d8 216 SUPERFAMILY SSF56300 28 167 2.71E-13 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS05320 c11f526c11feba0187930ed8125fc2d8 216 PANTHER PTHR39323:SF1 5 216 2.5E-32 T 22-04-2016 PP4_RS05320 c11f526c11feba0187930ed8125fc2d8 216 Pfam PF00149 Calcineurin-like phosphoesterase 28 123 4.4E-6 T 22-04-2016 IPR004843 Calcineurin-like phosphoesterase domain, apaH type GO:0016787 PP4_RS05320 c11f526c11feba0187930ed8125fc2d8 216 Gene3D G3DSA:3.60.21.10 28 120 1.4E-8 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS05320 c11f526c11feba0187930ed8125fc2d8 216 TIGRFAM TIGR04123 P_estr_lig_assc: metallophosphoesterase, DNA ligase-associated 7 214 2.0E-68 T 22-04-2016 IPR026336 Metallophosphoesterase, DNA ligase-associated PP4_RS10205 a6148362fe9fecf92aac8d89c15fa4e2 397 PANTHER PTHR34219:SF3 6 388 3.3E-100 T 22-04-2016 PP4_RS10205 a6148362fe9fecf92aac8d89c15fa4e2 397 Pfam PF03929 PepSY-associated TM region 15 368 2.2E-53 T 22-04-2016 IPR005625 PepSY-associated TM protein PP4_RS10205 a6148362fe9fecf92aac8d89c15fa4e2 397 PANTHER PTHR34219 6 388 3.3E-100 T 22-04-2016 PP4_RS01460 f6b2c768e45c56de083634b26b345d19 181 SUPERFAMILY SSF51182 1 178 7.85E-79 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS01460 f6b2c768e45c56de083634b26b345d19 181 Gene3D G3DSA:2.60.120.10 1 178 1.7E-82 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS01460 f6b2c768e45c56de083634b26b345d19 181 PANTHER PTHR21047:SF2 1 178 1.1E-76 T 22-04-2016 PP4_RS01460 f6b2c768e45c56de083634b26b345d19 181 ProDom PD001462 35-EPIMERASE DTDP-4-DEHYDRORHAMNOSE ISOMERASE RMLC EPIMERASE RELATED DTDP-6-DEOXY-D-GLUCOSE-35-EPIMERASE DTDP-4-KETO-6-DEOXY-D-GLUCOSE DTDP-4-KETO-6-DEOXYGLUCOSE-35-EPIMERASE DTDP-L-RHAMNOSE 1 171 1.0E-84 T 22-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 PP4_RS01460 f6b2c768e45c56de083634b26b345d19 181 TIGRFAM TIGR01221 rmlC: dTDP-4-dehydrorhamnose 3,5-epimerase 2 178 2.2E-82 T 22-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 PP4_RS01460 f6b2c768e45c56de083634b26b345d19 181 Pfam PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase 6 174 9.5E-75 T 22-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 PP4_RS01460 f6b2c768e45c56de083634b26b345d19 181 PANTHER PTHR21047 1 178 1.1E-76 T 22-04-2016 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related GO:0008830 PP4_RS08480 bf97113c26dca48faf278ffa0516d1cb 367 PRINTS PR01344 Salmonella/Shigella invasion protein E (InvE) signature 197 209 4.5E-34 T 22-04-2016 IPR003520 Salmonella/Shigella invasion protein E GO:0009306 PP4_RS08480 bf97113c26dca48faf278ffa0516d1cb 367 PRINTS PR01344 Salmonella/Shigella invasion protein E (InvE) signature 104 123 4.5E-34 T 22-04-2016 IPR003520 Salmonella/Shigella invasion protein E GO:0009306 PP4_RS08480 bf97113c26dca48faf278ffa0516d1cb 367 PRINTS PR01344 Salmonella/Shigella invasion protein E (InvE) signature 223 243 4.5E-34 T 22-04-2016 IPR003520 Salmonella/Shigella invasion protein E GO:0009306 PP4_RS08480 bf97113c26dca48faf278ffa0516d1cb 367 PRINTS PR01344 Salmonella/Shigella invasion protein E (InvE) signature 42 62 4.5E-34 T 22-04-2016 IPR003520 Salmonella/Shigella invasion protein E GO:0009306 PP4_RS08480 bf97113c26dca48faf278ffa0516d1cb 367 PRINTS PR01344 Salmonella/Shigella invasion protein E (InvE) signature 168 186 4.5E-34 T 22-04-2016 IPR003520 Salmonella/Shigella invasion protein E GO:0009306 PP4_RS08480 bf97113c26dca48faf278ffa0516d1cb 367 TIGRFAM TIGR02568 LcrE: type III secretion regulator YopN/LcrE/InvE/MxiC 33 253 7.3E-44 T 22-04-2016 IPR013401 Type III secretion regulator, YopN/LcrE/InvE/MxiC GO:0009986|GO:0030254|GO:0050709 PP4_RS08480 bf97113c26dca48faf278ffa0516d1cb 367 Pfam PF07201 HrpJ-like domain 43 202 1.5E-30 T 22-04-2016 IPR010812 Hypersensitivity response secretion-like, HrpJ GO:0009405|GO:0019867|GO:0046903 PP4_RS08480 bf97113c26dca48faf278ffa0516d1cb 367 SUPERFAMILY SSF140591 58 250 1.88E-37 T 22-04-2016 PP4_RS23550 e5456b2fad4e442834a717e82112d297 237 PANTHER PTHR30545:SF2 1 237 6.3E-84 T 22-04-2016 PP4_RS23550 e5456b2fad4e442834a717e82112d297 237 Hamap MF_00095 Sugar fermentation stimulation protein A [sfsA]. 1 235 56.201 T 22-04-2016 IPR005224 Sugar fermentation stimulation protein PP4_RS23550 e5456b2fad4e442834a717e82112d297 237 PANTHER PTHR30545 1 237 6.3E-84 T 22-04-2016 PP4_RS23550 e5456b2fad4e442834a717e82112d297 237 TIGRFAM TIGR00230 sfsA: sugar fermentation stimulation protein 4 234 1.2E-65 T 22-04-2016 IPR005224 Sugar fermentation stimulation protein PP4_RS23550 e5456b2fad4e442834a717e82112d297 237 Pfam PF03749 Sugar fermentation stimulation protein 13 225 1.1E-71 T 22-04-2016 IPR005224 Sugar fermentation stimulation protein PP4_RS20035 119cb4cba7d4b48bbcdf142f65766778 394 Pfam PF13579 Glycosyl transferase 4-like domain 22 179 2.1E-8 T 22-04-2016 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain PP4_RS20035 119cb4cba7d4b48bbcdf142f65766778 394 Gene3D G3DSA:3.40.50.2000 214 299 0.001 T 22-04-2016 PP4_RS20035 119cb4cba7d4b48bbcdf142f65766778 394 Pfam PF13692 Glycosyl transferases group 1 223 363 3.7E-6 T 22-04-2016 PP4_RS20035 119cb4cba7d4b48bbcdf142f65766778 394 SUPERFAMILY SSF53756 4 385 1.62E-22 T 22-04-2016 PP4_RS01180 26c74e1e5b18df4966d010ec0923849b 558 Pfam PF05935 Arylsulfotransferase (ASST) 31 548 1.2E-156 T 22-04-2016 IPR010262 Arylsulfotransferase PP4_RS20490 2dff474cecbb6e8f8d1c11a307852fcb 317 Pfam PF02371 Transposase IS116/IS110/IS902 family 194 267 2.3E-17 T 22-04-2016 IPR003346 Transposase, IS116/IS110/IS902 GO:0003677|GO:0004803|GO:0006313 PP4_RS20490 2dff474cecbb6e8f8d1c11a307852fcb 317 PANTHER PTHR33055 7 308 1.6E-33 T 22-04-2016 PP4_RS20490 2dff474cecbb6e8f8d1c11a307852fcb 317 PANTHER PTHR33055:SF3 7 308 1.6E-33 T 22-04-2016 PP4_RS20490 2dff474cecbb6e8f8d1c11a307852fcb 317 Pfam PF01548 Transposase 10 148 8.8E-21 T 22-04-2016 IPR002525 Transposase, IS111A/IS1328/IS1533, N-terminal GO:0003677|GO:0004803|GO:0006313 PP4_RS10380 c988cb2714b5f2f769966f9f17c7eef4 350 SUPERFAMILY SSF55103 136 349 2.35E-19 T 22-04-2016 IPR016164 FAD-linked oxidase-like, C-terminal GO:0003824|GO:0050660 PP4_RS10380 c988cb2714b5f2f769966f9f17c7eef4 350 Pfam PF01565 FAD binding domain 15 136 1.1E-22 T 22-04-2016 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 PP4_RS10380 c988cb2714b5f2f769966f9f17c7eef4 350 SUPERFAMILY SSF56176 13 174 1.78E-33 T 22-04-2016 IPR016166 FAD-binding, type 2 GO:0003824|GO:0016614|GO:0050660|GO:0055114 PP4_RS10380 c988cb2714b5f2f769966f9f17c7eef4 350 PANTHER PTHR11748 9 346 1.7E-95 T 22-04-2016 PP4_RS10380 c988cb2714b5f2f769966f9f17c7eef4 350 PANTHER PTHR11748:SF1 9 346 1.7E-95 T 22-04-2016 PP4_RS10380 c988cb2714b5f2f769966f9f17c7eef4 350 Gene3D G3DSA:1.10.45.10 323 346 2.1E-5 T 22-04-2016 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 PP4_RS10380 c988cb2714b5f2f769966f9f17c7eef4 350 Gene3D G3DSA:3.30.465.10 53 174 2.2E-24 T 22-04-2016 IPR016169 CO dehydrogenase flavoprotein-like, FAD-binding, subdomain 2 GO:0050660 PP4_RS19955 858ba2a72f8f6f236040b4e9f3d8aa8d 396 TIGRFAM TIGR00843 benE: benzoate transporter 13 391 9.6E-133 T 22-04-2016 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 PP4_RS19955 858ba2a72f8f6f236040b4e9f3d8aa8d 396 PANTHER PTHR30199 1 394 1.3E-162 T 22-04-2016 PP4_RS19955 858ba2a72f8f6f236040b4e9f3d8aa8d 396 Pfam PF03594 Benzoate membrane transport protein 14 389 6.5E-157 T 22-04-2016 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 PP4_RS19955 858ba2a72f8f6f236040b4e9f3d8aa8d 396 PANTHER PTHR30199:SF0 1 394 1.3E-162 T 22-04-2016 IPR004711 Benzoate transporter GO:0016021|GO:0042919|GO:0042925 PP4_RS08860 463ab6d6018f452ebaafcdfaf9364efa 418 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 31 413 4.8E-113 T 22-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 PP4_RS08860 463ab6d6018f452ebaafcdfaf9364efa 418 SMART SM01329 30 414 3.1E-174 T 22-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 PP4_RS08860 463ab6d6018f452ebaafcdfaf9364efa 418 PANTHER PTHR11835 3 166 4.4E-237 T 22-04-2016 IPR001804 Isocitrate and isopropylmalate dehydrogenases family GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 PP4_RS08860 463ab6d6018f452ebaafcdfaf9364efa 418 PANTHER PTHR11835 190 257 4.4E-237 T 22-04-2016 IPR001804 Isocitrate and isopropylmalate dehydrogenases family GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 PP4_RS08860 463ab6d6018f452ebaafcdfaf9364efa 418 PANTHER PTHR11835 277 418 4.4E-237 T 22-04-2016 IPR001804 Isocitrate and isopropylmalate dehydrogenases family GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 PP4_RS08860 463ab6d6018f452ebaafcdfaf9364efa 418 TIGRFAM TIGR00183 prok_nadp_idh: isocitrate dehydrogenase, NADP-dependent 3 418 1.1E-222 T 22-04-2016 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 PP4_RS08860 463ab6d6018f452ebaafcdfaf9364efa 418 Gene3D G3DSA:3.40.718.10 13 418 1.0E-161 T 22-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 PP4_RS08860 463ab6d6018f452ebaafcdfaf9364efa 418 SUPERFAMILY SSF53659 4 418 4.42E-145 T 22-04-2016 PP4_RS08860 463ab6d6018f452ebaafcdfaf9364efa 418 PANTHER PTHR11835:SF52 3 166 4.4E-237 T 22-04-2016 PP4_RS08860 463ab6d6018f452ebaafcdfaf9364efa 418 PANTHER PTHR11835:SF52 190 257 4.4E-237 T 22-04-2016 PP4_RS08860 463ab6d6018f452ebaafcdfaf9364efa 418 PANTHER PTHR11835:SF52 277 418 4.4E-237 T 22-04-2016 PP4_RS08860 463ab6d6018f452ebaafcdfaf9364efa 418 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 305 324 - T 22-04-2016 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: REACT_1046 PP4_RS18360 d56acef7c9cd570baf7e586e64303933 104 TIGRFAM TIGR02448 TIGR02448: conserverd hypothetical protein 1 98 3.5E-26 T 22-04-2016 IPR012661 Conserved hypothetical protein CHP02448 PP4_RS18360 d56acef7c9cd570baf7e586e64303933 104 Pfam PF09498 Protein of unknown function (DUF2388) 31 98 3.5E-26 T 22-04-2016 IPR012661 Conserved hypothetical protein CHP02448 PP4_RS11390 84b00fe9f77c00a3fa8eedd74e3e6853 496 Gene3D G3DSA:1.20.1600.10 72 488 3.8E-114 T 22-04-2016 PP4_RS11390 84b00fe9f77c00a3fa8eedd74e3e6853 496 Pfam PF02321 Outer membrane efflux protein 300 483 1.4E-30 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PP4_RS11390 84b00fe9f77c00a3fa8eedd74e3e6853 496 Pfam PF02321 Outer membrane efflux protein 83 276 4.3E-26 T 22-04-2016 IPR003423 Outer membrane efflux protein GO:0005215|GO:0006810 PP4_RS11390 84b00fe9f77c00a3fa8eedd74e3e6853 496 TIGRFAM TIGR01845 outer_NodT: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 30 485 4.5E-129 T 22-04-2016 IPR010131 RND efflux system, outer membrane lipoprotein, NodT GO:0005215|GO:0006810|GO:0008289|GO:0016020 PP4_RS11390 84b00fe9f77c00a3fa8eedd74e3e6853 496 PANTHER PTHR30203 6 487 1.0E-173 T 22-04-2016 PP4_RS11390 84b00fe9f77c00a3fa8eedd74e3e6853 496 SUPERFAMILY SSF56954 74 487 1.83E-113 T 22-04-2016 PP4_RS11390 84b00fe9f77c00a3fa8eedd74e3e6853 496 SUPERFAMILY SSF56954 21 50 1.83E-113 T 22-04-2016 PP4_RS11390 84b00fe9f77c00a3fa8eedd74e3e6853 496 PANTHER PTHR30203:SF7 6 487 1.0E-173 T 22-04-2016 PP4_RS24015 b5dbef2ecd306854684a42fc6101ac6e 390 PANTHER PTHR23501:SF28 9 390 7.7E-150 T 22-04-2016 PP4_RS24015 b5dbef2ecd306854684a42fc6101ac6e 390 PANTHER PTHR23501 9 390 7.7E-150 T 22-04-2016 PP4_RS24015 b5dbef2ecd306854684a42fc6101ac6e 390 SUPERFAMILY SSF103473 5 387 1.05E-54 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS24015 b5dbef2ecd306854684a42fc6101ac6e 390 Pfam PF07690 Major Facilitator Superfamily 23 340 1.1E-28 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS24015 b5dbef2ecd306854684a42fc6101ac6e 390 Gene3D G3DSA:1.20.1250.20 215 388 6.8E-13 T 22-04-2016 PP4_RS24015 b5dbef2ecd306854684a42fc6101ac6e 390 Gene3D G3DSA:1.20.1250.20 18 197 7.8E-28 T 22-04-2016 PP4_RS23985 c5d373c9aa44bd81e3a6e25f0dfc619d 264 Pfam PF08878 Domain of unknown function (DUF1837) 23 187 1.4E-8 T 22-04-2016 IPR014976 Protein of unknown function DUF1837 PP4_RS11195 bb4ea5b0056f03f2e145e80df2049f8a 339 Pfam PF02625 XdhC and CoxI family 15 87 4.9E-24 T 22-04-2016 IPR003777 XdhC- CoxI PP4_RS11195 bb4ea5b0056f03f2e145e80df2049f8a 339 PANTHER PTHR30388:SF4 5 316 1.5E-72 T 22-04-2016 PP4_RS11195 bb4ea5b0056f03f2e145e80df2049f8a 339 PANTHER PTHR30388 5 316 1.5E-72 T 22-04-2016 PP4_RS11195 bb4ea5b0056f03f2e145e80df2049f8a 339 Pfam PF13478 XdhC Rossmann domain 169 311 8.5E-35 T 22-04-2016 IPR027051 XdhC Rossmann domain PP4_RS12605 44e89c4453156dd9cc45919106ba48b6 472 PANTHER PTHR35369:SF2 1 472 2.2E-146 T 22-04-2016 PP4_RS12605 44e89c4453156dd9cc45919106ba48b6 472 Pfam PF00817 impB/mucB/samB family 24 150 2.2E-7 T 22-04-2016 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 PP4_RS12605 44e89c4453156dd9cc45919106ba48b6 472 SUPERFAMILY SSF56672 1 225 1.78E-34 T 22-04-2016 PP4_RS12605 44e89c4453156dd9cc45919106ba48b6 472 PANTHER PTHR35369 1 472 2.2E-146 T 22-04-2016 PP4_RS11265 e7e160a7b066e9dfb5411875c095ce79 404 PANTHER PTHR30574:SF5 28 397 2.6E-94 T 22-04-2016 PP4_RS11265 e7e160a7b066e9dfb5411875c095ce79 404 PANTHER PTHR30574 28 397 2.6E-94 T 22-04-2016 PP4_RS11265 e7e160a7b066e9dfb5411875c095ce79 404 Pfam PF04143 Sulphur transport 55 382 1.1E-76 T 22-04-2016 IPR007272 Sulphur transport domain PP4_RS22005 0c9b78e1fe43ba6795193ae076d09bb0 1273 Pfam PF13502 AsmA-like C-terminal region 1018 1262 8.9E-49 T 22-04-2016 IPR032712 AsmA-like, C-terminal PP4_RS22005 0c9b78e1fe43ba6795193ae076d09bb0 1273 Pfam PF13116 Protein of unknown function 517 792 9.5E-57 T 22-04-2016 IPR025263 Domain of unknown function DUF3971 PP4_RS22005 0c9b78e1fe43ba6795193ae076d09bb0 1273 TIGRFAM TIGR02099 TIGR02099: TIGR02099 family protein 13 1272 0.0 T 22-04-2016 IPR011836 Conserved hypothetical protein CHP02099 PP4_RS22005 0c9b78e1fe43ba6795193ae076d09bb0 1273 PANTHER PTHR38690 5 1273 2.8E-284 T 22-04-2016 PP4_RS17390 bbbf26b0405e0f952d1d836d0c9471fc 175 SMART SM00972 115 172 3.0E-13 T 22-04-2016 IPR007893 Spore coat protein U PP4_RS17390 bbbf26b0405e0f952d1d836d0c9471fc 175 Pfam PF05229 Spore Coat Protein U domain 24 172 2.9E-22 T 22-04-2016 IPR007893 Spore coat protein U PP4_RS17390 bbbf26b0405e0f952d1d836d0c9471fc 175 PANTHER PTHR37089 25 175 3.4E-14 T 22-04-2016 PP4_RS11645 e40c40929d2844752c70833978dfe43d 216 Pfam PF12796 Ankyrin repeats (3 copies) 93 152 1.1E-7 T 22-04-2016 IPR020683 Ankyrin repeat-containing domain PP4_RS11645 e40c40929d2844752c70833978dfe43d 216 Pfam PF12796 Ankyrin repeats (3 copies) 24 88 1.6E-6 T 22-04-2016 IPR020683 Ankyrin repeat-containing domain PP4_RS11645 e40c40929d2844752c70833978dfe43d 216 SMART SM00248 156 190 3.2 T 22-04-2016 IPR002110 Ankyrin repeat GO:0005515 PP4_RS11645 e40c40929d2844752c70833978dfe43d 216 SMART SM00248 123 152 0.09 T 22-04-2016 IPR002110 Ankyrin repeat GO:0005515 PP4_RS11645 e40c40929d2844752c70833978dfe43d 216 SMART SM00248 24 53 230.0 T 22-04-2016 IPR002110 Ankyrin repeat GO:0005515 PP4_RS11645 e40c40929d2844752c70833978dfe43d 216 SMART SM00248 90 119 230.0 T 22-04-2016 IPR002110 Ankyrin repeat GO:0005515 PP4_RS11645 e40c40929d2844752c70833978dfe43d 216 SMART SM00248 57 86 0.021 T 22-04-2016 IPR002110 Ankyrin repeat GO:0005515 PP4_RS11645 e40c40929d2844752c70833978dfe43d 216 SUPERFAMILY SSF48403 22 215 6.16E-48 T 22-04-2016 IPR020683 Ankyrin repeat-containing domain PP4_RS11645 e40c40929d2844752c70833978dfe43d 216 PANTHER PTHR24198 29 216 1.6E-43 T 22-04-2016 PP4_RS11645 e40c40929d2844752c70833978dfe43d 216 Gene3D G3DSA:1.25.40.20 27 215 2.6E-48 T 22-04-2016 IPR020683 Ankyrin repeat-containing domain PP4_RS26285 3b2940203990172db63b39f59068a8a0 306 Pfam PF06977 SdiA-regulated 59 304 1.1E-96 T 22-04-2016 IPR009722 SdiA-regulated PP4_RS26285 3b2940203990172db63b39f59068a8a0 306 Gene3D G3DSA:2.120.10.30 70 294 8.7E-18 T 22-04-2016 IPR011042 Six-bladed beta-propeller, TolB-like PP4_RS26285 3b2940203990172db63b39f59068a8a0 306 SUPERFAMILY SSF50956 18 306 3.79E-42 T 22-04-2016 PP4_RS21435 2091204f58e8e13ef9dc4a541b26bfd2 65 Pfam PF06945 Protein of unknown function (DUF1289) 12 57 5.1E-20 T 22-04-2016 IPR010710 Protein of unknown function DUF1289 PP4_RS21435 2091204f58e8e13ef9dc4a541b26bfd2 65 PANTHER PTHR35175 1 64 2.2E-18 T 22-04-2016 PP4_RS05920 6f3b3eee3fa79e7ce909501c46fc3e84 372 TIGRFAM TIGR02794 tolA_full: protein TolA 14 367 1.6E-66 T 22-04-2016 IPR014161 Tol-Pal system, TolA GO:0005215|GO:0006810|GO:0016020 PP4_RS05920 6f3b3eee3fa79e7ce909501c46fc3e84 372 Pfam PF13103 TonB C terminal 285 348 3.1E-10 T 22-04-2016 IPR006260 TonB, C-terminal GO:0006810 PP4_RS05920 6f3b3eee3fa79e7ce909501c46fc3e84 372 SUPERFAMILY SSF74653 255 369 1.18E-21 T 22-04-2016 PP4_RS05920 6f3b3eee3fa79e7ce909501c46fc3e84 372 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 294 366 2.2E-12 T 22-04-2016 IPR006260 TonB, C-terminal GO:0006810 PP4_RS05920 6f3b3eee3fa79e7ce909501c46fc3e84 372 PRINTS PR00624 Histone H5 signature 192 211 7.5E-5 T 22-04-2016 IPR005819 Histone H5 GO:0000786|GO:0003677|GO:0006334 PP4_RS05920 6f3b3eee3fa79e7ce909501c46fc3e84 372 PRINTS PR00624 Histone H5 signature 96 120 7.5E-5 T 22-04-2016 IPR005819 Histone H5 GO:0000786|GO:0003677|GO:0006334 PP4_RS05920 6f3b3eee3fa79e7ce909501c46fc3e84 372 PRINTS PR00624 Histone H5 signature 131 145 7.5E-5 T 22-04-2016 IPR005819 Histone H5 GO:0000786|GO:0003677|GO:0006334 PP4_RS05920 6f3b3eee3fa79e7ce909501c46fc3e84 372 Gene3D G3DSA:3.30.1150.10 252 370 2.1E-32 T 22-04-2016 PP4_RS23635 3eecf1ba15f239931f05bbb661c08192 116 SMART SM00749 52 116 3.6E-4 T 22-04-2016 IPR014004 Transport-associated and nodulation domain, bacteria PP4_RS23635 3eecf1ba15f239931f05bbb661c08192 116 Pfam PF04972 BON domain 47 110 4.6E-14 T 22-04-2016 IPR007055 BON domain PP4_RS23635 3eecf1ba15f239931f05bbb661c08192 116 PANTHER PTHR34606 42 114 4.3E-22 T 22-04-2016 PP4_RS06715 4676ad6383f2ee0ab452e50f34de2281 138 PANTHER PTHR38102 2 138 1.9E-18 T 22-04-2016 PP4_RS21535 127059391e10073004763474543645ae 96 TIGRFAM TIGR01410 tatB: twin arginine-targeting protein translocase TatB 2 62 1.5E-20 T 22-04-2016 IPR018448 Twin-arginine translocation protein TatB GO:0016020|GO:0043953 PP4_RS21535 127059391e10073004763474543645ae 96 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 21 40 2.0E-18 T 22-04-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 PP4_RS21535 127059391e10073004763474543645ae 96 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 1 21 2.0E-18 T 22-04-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 PP4_RS21535 127059391e10073004763474543645ae 96 PRINTS PR01506 Bacterial sec-independent translocation TatB protein signature 40 58 2.0E-18 T 22-04-2016 IPR003998 Twin-arginine translocation protein TatB-like GO:0009306|GO:0016020 PP4_RS21535 127059391e10073004763474543645ae 96 PANTHER PTHR33162:SF4 1 73 2.0E-16 T 22-04-2016 PP4_RS21535 127059391e10073004763474543645ae 96 PANTHER PTHR33162 1 73 2.0E-16 T 22-04-2016 PP4_RS21535 127059391e10073004763474543645ae 96 Pfam PF02416 mttA/Hcf106 family 4 49 5.1E-11 T 22-04-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 PP4_RS15025 db824c88fc83bc6bc85b3112d06d3c56 352 PANTHER PTHR11091 8 348 1.3E-50 T 22-04-2016 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS15025 db824c88fc83bc6bc85b3112d06d3c56 352 Pfam PF02615 Malate/L-lactate dehydrogenase 9 338 4.8E-81 T 22-04-2016 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS15025 db824c88fc83bc6bc85b3112d06d3c56 352 Gene3D G3DSA:3.30.1370.60 78 277 3.0E-49 T 22-04-2016 PP4_RS15025 db824c88fc83bc6bc85b3112d06d3c56 352 Gene3D G3DSA:1.10.1530.10 9 77 7.5E-16 T 22-04-2016 PP4_RS15025 db824c88fc83bc6bc85b3112d06d3c56 352 SUPERFAMILY SSF89733 7 348 9.16E-82 T 22-04-2016 IPR003767 Malate/L-lactate dehydrogenase GO:0008152|GO:0016491|GO:0055114 PP4_RS01890 1a7c1ce65f1e6619881e8fd08d51cdf2 352 PANTHER PTHR30160:SF8 1 348 1.6E-157 T 22-04-2016 PP4_RS01890 1a7c1ce65f1e6619881e8fd08d51cdf2 352 SUPERFAMILY SSF53756 2 346 1.57E-81 T 22-04-2016 PP4_RS01890 1a7c1ce65f1e6619881e8fd08d51cdf2 352 PANTHER PTHR30160 1 348 1.6E-157 T 22-04-2016 PP4_RS01890 1a7c1ce65f1e6619881e8fd08d51cdf2 352 Gene3D G3DSA:3.40.50.2000 2 148 4.2E-33 T 22-04-2016 PP4_RS01890 1a7c1ce65f1e6619881e8fd08d51cdf2 352 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 76 312 6.1E-72 T 22-04-2016 IPR002201 Glycosyl transferase, family 9 GO:0008152|GO:0016757 PP4_RS01890 1a7c1ce65f1e6619881e8fd08d51cdf2 352 Gene3D G3DSA:3.40.50.2000 167 346 2.0E-49 T 22-04-2016 PP4_RS01890 1a7c1ce65f1e6619881e8fd08d51cdf2 352 TIGRFAM TIGR02193 heptsyl_trn_I: lipopolysaccharide heptosyltransferase I 2 295 1.5E-113 T 22-04-2016 IPR011908 Lipopolysaccharide heptosyltransferase I GO:0008920|GO:0009244 KEGG: 00231+2.-.-.-|UniPathway: UPA00958 PP4_RS12410 529a526ca6c761936bde6f8f1287abd2 356 PANTHER PTHR35564 2 345 3.6E-66 T 22-04-2016 PP4_RS12410 529a526ca6c761936bde6f8f1287abd2 356 Pfam PF06996 Type VI secretion, VasB, ImpH, VC_A0111 19 333 2.7E-102 T 22-04-2016 IPR010732 Type VI secretion, TssG-like PP4_RS12410 529a526ca6c761936bde6f8f1287abd2 356 PANTHER PTHR35564:SF2 2 345 3.6E-66 T 22-04-2016 PP4_RS12410 529a526ca6c761936bde6f8f1287abd2 356 TIGRFAM TIGR03347 VI_chp_1: type VI secretion protein, VC_A0111 family 19 333 1.5E-108 T 22-04-2016 IPR010732 Type VI secretion, TssG-like PP4_RS07890 74471e9b41ade52c8ff576d39d46ed90 539 Gene3D G3DSA:1.10.1280.10 325 446 3.7E-4 T 22-04-2016 IPR008922 Uncharacterised domain, di-copper centre PP4_RS07890 74471e9b41ade52c8ff576d39d46ed90 539 SUPERFAMILY SSF48056 248 441 5.23E-11 T 22-04-2016 IPR008922 Uncharacterised domain, di-copper centre PP4_RS23970 2f4cb662018c4f0a7b25120cb239339e 159 Gene3D G3DSA:3.40.50.1010 2 153 1.5E-43 T 22-04-2016 IPR029060 PIN domain-like PP4_RS23970 2f4cb662018c4f0a7b25120cb239339e 159 PANTHER PTHR35458:SF2 1 152 2.5E-54 T 22-04-2016 PP4_RS23970 2f4cb662018c4f0a7b25120cb239339e 159 Pfam PF01936 NYN domain 3 151 1.1E-33 T 22-04-2016 IPR021139 NYN domain, limkain-b1-type PP4_RS23970 2f4cb662018c4f0a7b25120cb239339e 159 PANTHER PTHR35458 1 152 2.5E-54 T 22-04-2016 PP4_RS00255 4ad37d287eebe78edc3e828146c6e9c3 683 Pfam PF05746 DALR anticodon binding domain 578 670 1.8E-7 T 22-04-2016 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 PP4_RS00255 4ad37d287eebe78edc3e828146c6e9c3 683 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 6 543 6.7E-204 T 22-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 PP4_RS00255 4ad37d287eebe78edc3e828146c6e9c3 683 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 7 20 3.4E-34 T 22-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 PP4_RS00255 4ad37d287eebe78edc3e828146c6e9c3 683 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 388 407 3.4E-34 T 22-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 PP4_RS00255 4ad37d287eebe78edc3e828146c6e9c3 683 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 312 328 3.4E-34 T 22-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 PP4_RS00255 4ad37d287eebe78edc3e828146c6e9c3 683 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 50 62 3.4E-34 T 22-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 PP4_RS00255 4ad37d287eebe78edc3e828146c6e9c3 683 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 240 255 3.4E-34 T 22-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 PP4_RS00255 4ad37d287eebe78edc3e828146c6e9c3 683 SUPERFAMILY SSF109604 333 484 9.42E-20 T 22-04-2016 PP4_RS00255 4ad37d287eebe78edc3e828146c6e9c3 683 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 1 682 1.1E-234 T 22-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 PP4_RS00255 4ad37d287eebe78edc3e828146c6e9c3 683 PANTHER PTHR30075:SF2 1 682 0.0 T 22-04-2016 PP4_RS00255 4ad37d287eebe78edc3e828146c6e9c3 683 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 3 682 25.068 T 22-04-2016 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 PP4_RS00255 4ad37d287eebe78edc3e828146c6e9c3 683 PANTHER PTHR30075 1 682 0.0 T 22-04-2016 PP4_RS03715 67a1de8f3ee924ccee2bb14dadd08a73 113 Pfam PF08888 HopJ type III effector protein 6 109 4.2E-38 T 22-04-2016 IPR014984 HopJ type III effector protein PP4_RS03715 67a1de8f3ee924ccee2bb14dadd08a73 113 Gene3D G3DSA:3.20.160.10 8 112 7.7E-45 T 22-04-2016 PP4_RS15980 d5f79b20a5bdc4edc1e44d90734d9537 395 Pfam PF13609 Gram-negative porin 22 373 1.6E-31 T 22-04-2016 PP4_RS15980 d5f79b20a5bdc4edc1e44d90734d9537 395 Gene3D G3DSA:2.40.160.10 35 392 8.1E-15 T 22-04-2016 IPR023614 Porin domain PP4_RS15980 d5f79b20a5bdc4edc1e44d90734d9537 395 SUPERFAMILY SSF56935 34 393 1.65E-36 T 22-04-2016 PP4_RS04730 95e0d72dff571c9b694e76f12a5ed72f 174 Pfam PF06127 Protein of unknown function (DUF962) 1 147 2.3E-27 T 22-04-2016 IPR009305 Protein of unknown function DUF962 PP4_RS04730 95e0d72dff571c9b694e76f12a5ed72f 174 PANTHER PTHR28026 1 163 2.0E-48 T 22-04-2016 PP4_RS04730 95e0d72dff571c9b694e76f12a5ed72f 174 PANTHER PTHR28026:SF3 1 163 2.0E-48 T 22-04-2016 PP4_RS17220 024dfc9c798740e0aafd0b41fda0a2a6 231 SUPERFAMILY SSF81901 34 127 1.22E-5 T 22-04-2016 PP4_RS17220 024dfc9c798740e0aafd0b41fda0a2a6 231 Gene3D G3DSA:1.25.40.10 34 136 5.1E-7 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS17190 74e9f2ae61f1662c1ce2560ee3d6a93b 396 Gene3D G3DSA:1.20.1250.20 22 201 3.3E-21 T 22-04-2016 PP4_RS17190 74e9f2ae61f1662c1ce2560ee3d6a93b 396 Gene3D G3DSA:1.20.1250.20 216 389 1.5E-13 T 22-04-2016 PP4_RS17190 74e9f2ae61f1662c1ce2560ee3d6a93b 396 PANTHER PTHR23501 7 388 3.2E-68 T 22-04-2016 PP4_RS17190 74e9f2ae61f1662c1ce2560ee3d6a93b 396 Pfam PF07690 Major Facilitator Superfamily 250 384 2.6E-8 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS17190 74e9f2ae61f1662c1ce2560ee3d6a93b 396 Pfam PF07690 Major Facilitator Superfamily 25 242 7.1E-25 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS17190 74e9f2ae61f1662c1ce2560ee3d6a93b 396 PANTHER PTHR23501:SF16 7 388 3.2E-68 T 22-04-2016 PP4_RS17190 74e9f2ae61f1662c1ce2560ee3d6a93b 396 SUPERFAMILY SSF103473 13 388 3.27E-48 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS19215 c41534b58d9659eddd7a0e7821bd28ae 346 Pfam PF08907 Domain of unknown function (DUF1853) 50 330 1.5E-98 T 22-04-2016 IPR015003 Protein of unknown function DUF1853 PP4_RS14985 39f596637e32a36d75c15d81920bcaff 105 Hamap MF_01954 Urease subunit beta [ureB]. 1 101 32.703 T 22-04-2016 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 PP4_RS14985 39f596637e32a36d75c15d81920bcaff 105 TIGRFAM TIGR00192 urease_beta: urease, beta subunit 1 102 8.6E-47 T 22-04-2016 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 PP4_RS14985 39f596637e32a36d75c15d81920bcaff 105 PANTHER PTHR33569 1 102 3.5E-60 T 22-04-2016 PP4_RS14985 39f596637e32a36d75c15d81920bcaff 105 SUPERFAMILY SSF51278 1 102 2.88E-48 T 22-04-2016 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 PP4_RS14985 39f596637e32a36d75c15d81920bcaff 105 Pfam PF00699 Urease beta subunit 3 99 5.7E-46 T 22-04-2016 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 PP4_RS14985 39f596637e32a36d75c15d81920bcaff 105 Gene3D G3DSA:2.10.150.10 1 102 3.9E-51 T 22-04-2016 IPR002019 Urease, beta subunit KEGG: 00220+3.5.1.5|KEGG: 00230+3.5.1.5|KEGG: 00791+3.5.1.5|MetaCyc: PWY-5704|UniPathway: UPA00258 PP4_RS14985 39f596637e32a36d75c15d81920bcaff 105 PANTHER PTHR33569:SF1 1 102 3.5E-60 T 22-04-2016 PP4_RS25985 b7eb968f0ddefabaed8adb8d2aa86921 138 Pfam PF05154 TM2 domain 80 125 6.9E-13 T 22-04-2016 IPR007829 TM2 domain PP4_RS25985 b7eb968f0ddefabaed8adb8d2aa86921 138 Pfam PF05154 TM2 domain 14 60 3.5E-15 T 22-04-2016 IPR007829 TM2 domain PP4_RS25985 b7eb968f0ddefabaed8adb8d2aa86921 138 PANTHER PTHR21016 12 78 6.8E-24 T 22-04-2016 PP4_RS13975 d7ae641eeaee25e75cee0badda82a398 259 Gene3D G3DSA:3.20.20.150 3 250 4.1E-81 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PP4_RS13975 d7ae641eeaee25e75cee0badda82a398 259 SUPERFAMILY SSF51658 5 249 1.8E-65 T 22-04-2016 IPR013022 Xylose isomerase-like, TIM barrel domain PP4_RS06865 80eb00fa531ee1fb93d59b4d1a8ae02e 397 Pfam PF14891 Effector protein 212 397 1.4E-12 T 22-04-2016 IPR028208 Effector protein NleD-like PP4_RS05370 52b66a9aba4d07aedcf3f7fcbb460c3f 300 SUPERFAMILY SSF53686 6 291 1.31E-53 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PP4_RS05370 52b66a9aba4d07aedcf3f7fcbb460c3f 300 PANTHER PTHR10314:SF35 1 285 4.2E-38 T 22-04-2016 PP4_RS05370 52b66a9aba4d07aedcf3f7fcbb460c3f 300 PANTHER PTHR10314 1 285 4.2E-38 T 22-04-2016 PP4_RS05370 52b66a9aba4d07aedcf3f7fcbb460c3f 300 Gene3D G3DSA:3.40.50.1100 8 23 9.8E-33 T 22-04-2016 PP4_RS05370 52b66a9aba4d07aedcf3f7fcbb460c3f 300 Gene3D G3DSA:3.40.50.1100 136 289 9.8E-33 T 22-04-2016 PP4_RS05370 52b66a9aba4d07aedcf3f7fcbb460c3f 300 Gene3D G3DSA:3.40.50.1100 24 129 2.8E-15 T 22-04-2016 PP4_RS05370 52b66a9aba4d07aedcf3f7fcbb460c3f 300 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 9 279 1.6E-39 T 22-04-2016 IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzyme PP4_RS17385 95675dbc67a35ab9089817826cf76790 178 SMART SM00972 118 175 6.1E-13 T 22-04-2016 IPR007893 Spore coat protein U PP4_RS17385 95675dbc67a35ab9089817826cf76790 178 Pfam PF05229 Spore Coat Protein U domain 26 175 8.4E-23 T 22-04-2016 IPR007893 Spore coat protein U PP4_RS17385 95675dbc67a35ab9089817826cf76790 178 PANTHER PTHR37089 5 178 1.2E-17 T 22-04-2016 PP4_RS07805 bbf2f8556fe3029175780d86b6129864 278 ProSitePatterns PS00194 Thioredoxin family active site. 160 178 - T 22-04-2016 IPR017937 Thioredoxin, conserved site GO:0045454 PP4_RS07805 bbf2f8556fe3029175780d86b6129864 278 SUPERFAMILY SSF52833 137 264 2.19E-35 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS07805 bbf2f8556fe3029175780d86b6129864 278 Pfam PF00578 AhpC/TSA family 133 245 2.2E-17 T 22-04-2016 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15 PP4_RS07805 bbf2f8556fe3029175780d86b6129864 278 Gene3D G3DSA:3.40.30.10 17 41 1.3E-39 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS07805 bbf2f8556fe3029175780d86b6129864 278 Gene3D G3DSA:3.40.30.10 129 264 1.3E-39 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS07805 bbf2f8556fe3029175780d86b6129864 278 PANTHER PTHR10438:SF244 219 269 2.4E-25 T 22-04-2016 PP4_RS07805 bbf2f8556fe3029175780d86b6129864 278 PANTHER PTHR10438:SF244 145 195 2.4E-25 T 22-04-2016 PP4_RS07805 bbf2f8556fe3029175780d86b6129864 278 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 4 99 1.7E-9 T 22-04-2016 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0009249|GO:0016020|GO:0016757|GO:0042158 UniPathway: UPA00664 PP4_RS07805 bbf2f8556fe3029175780d86b6129864 278 PANTHER PTHR10438 219 269 2.4E-25 T 22-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 PP4_RS07805 bbf2f8556fe3029175780d86b6129864 278 PANTHER PTHR10438 145 195 2.4E-25 T 22-04-2016 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 PP4_RS05070 4e4fae1fd902c9baf3a41a255dc49cb7 73 Gene3D G3DSA:1.10.720.30 13 71 3.4E-33 T 22-04-2016 IPR003034 SAP domain PP4_RS05070 4e4fae1fd902c9baf3a41a255dc49cb7 73 Pfam PF09905 Uncharacterized conserved protein (DUF2132) 5 67 6.1E-34 T 22-04-2016 IPR018668 DNA-binding protein VF530-like, bacteria GO:0003677 PP4_RS04465 c005658b4d2ec15a88aaa6971a7869fc 232 SUPERFAMILY SSF56112 20 187 2.04E-7 T 22-04-2016 IPR011009 Protein kinase-like domain PP4_RS04465 c005658b4d2ec15a88aaa6971a7869fc 232 Pfam PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family 14 220 9.5E-54 T 22-04-2016 IPR010440 Lipopolysaccharide kinase GO:0005524|GO:0016020|GO:0016773 PP4_RS04465 c005658b4d2ec15a88aaa6971a7869fc 232 PIRSF PIRSF026326 1 232 3.7E-97 T 22-04-2016 IPR027023 Putative lipopolysaccharide kinase InaA PP4_RS06725 65a017acdc2c9e40ae2a0acecc9c791a 99 SUPERFAMILY SSF54909 1 97 1.3E-31 T 22-04-2016 IPR011008 Dimeric alpha-beta barrel PP4_RS06725 65a017acdc2c9e40ae2a0acecc9c791a 99 PANTHER PTHR33606 1 98 3.4E-32 T 22-04-2016 PP4_RS06725 65a017acdc2c9e40ae2a0acecc9c791a 99 Pfam PF03795 YCII-related domain 1 95 9.6E-28 T 22-04-2016 IPR005545 YCII-related PP4_RS06725 65a017acdc2c9e40ae2a0acecc9c791a 99 Gene3D G3DSA:3.30.70.1060 1 98 5.4E-37 T 22-04-2016 PP4_RS15095 67fc00c5eec6a7237335da21cbab6662 672 Gene3D G3DSA:3.40.50.300 19 93 1.7E-10 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS15095 67fc00c5eec6a7237335da21cbab6662 672 Gene3D G3DSA:3.40.50.300 176 239 1.7E-10 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS15095 67fc00c5eec6a7237335da21cbab6662 672 Gene3D G3DSA:3.40.50.300 410 422 1.7E-10 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS15095 67fc00c5eec6a7237335da21cbab6662 672 Gene3D G3DSA:3.40.50.300 485 572 1.7E-10 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS15095 67fc00c5eec6a7237335da21cbab6662 672 Pfam PF12532 Protein of unknown function (DUF3732) 465 663 1.9E-56 T 22-04-2016 IPR022205 Protein of unknown function DUF3732 PP4_RS17620 fba79458607e3a4d2b7302511757b74a 122 Pfam PF06127 Protein of unknown function (DUF962) 12 85 1.4E-6 T 22-04-2016 IPR009305 Protein of unknown function DUF962 PP4_RS17620 fba79458607e3a4d2b7302511757b74a 122 Gene3D G3DSA:1.20.1640.10 25 68 8.5E-4 T 22-04-2016 PP4_RS24250 c0326b68cea4c1f8d93171ecb39476e9 415 Pfam PF03573 outer membrane porin, OprD family 27 414 3.7E-133 T 22-04-2016 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 PP4_RS24250 c0326b68cea4c1f8d93171ecb39476e9 415 PANTHER PTHR34596 1 415 2.9E-130 T 22-04-2016 PP4_RS24250 c0326b68cea4c1f8d93171ecb39476e9 415 Gene3D G3DSA:2.40.160.10 29 415 3.0E-135 T 22-04-2016 IPR023614 Porin domain PP4_RS16225 3c4a16789e7a2b8c909eed05d2014ec1 539 TIGRFAM TIGR03368 cellulose_yhjU: cellulose synthase operon protein YhjU 18 533 5.1E-214 T 22-04-2016 IPR017744 Cellulose biosynthesis protein BcsG PP4_RS16225 3c4a16789e7a2b8c909eed05d2014ec1 539 Pfam PF11658 Cellulose biosynthesis protein BcsG 20 528 4.4E-203 T 22-04-2016 IPR017744 Cellulose biosynthesis protein BcsG PP4_RS09865 4a83c81260dfa5ee7ebc2cef0335f714 120 Pfam PF00324 Amino acid permease 28 96 1.4E-20 T 22-04-2016 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 PP4_RS09865 4a83c81260dfa5ee7ebc2cef0335f714 120 PANTHER PTHR11785:SF351 27 99 2.7E-34 T 22-04-2016 PP4_RS09865 4a83c81260dfa5ee7ebc2cef0335f714 120 PANTHER PTHR11785 27 99 2.7E-34 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS06375 c6481982b8469cf3a18236a6623dc8f6 152 Pfam PF14085 Domain of unknown function (DUF4265) 25 138 1.3E-28 T 22-04-2016 IPR025361 Protein of unknown function DUF4265 PP4_RS26050 01062aca23156d21b00e6ac9fec6cced 270 Gene3D G3DSA:3.20.20.70 18 245 2.1E-48 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS26050 01062aca23156d21b00e6ac9fec6cced 270 Pfam PF05690 Thiazole biosynthesis protein ThiG 12 264 2.5E-107 T 22-04-2016 PP4_RS26050 01062aca23156d21b00e6ac9fec6cced 270 SUPERFAMILY SSF110399 9 256 3.53E-86 T 22-04-2016 IPR008867 Thiazole biosynthesis GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892|UniPathway: UPA00060 PP4_RS26050 01062aca23156d21b00e6ac9fec6cced 270 PANTHER PTHR34266:SF2 4 269 5.1E-148 T 22-04-2016 PP4_RS26050 01062aca23156d21b00e6ac9fec6cced 270 PANTHER PTHR34266 4 269 5.1E-148 T 22-04-2016 PP4_RS26050 01062aca23156d21b00e6ac9fec6cced 270 Hamap MF_00443 Thiazole synthase [thiG]. 9 270 42.157 T 22-04-2016 IPR008867 Thiazole biosynthesis GO:0009228 KEGG: 00730+2.8.1.10|MetaCyc: PWY-6891|MetaCyc: PWY-6892|UniPathway: UPA00060 PP4_RS06235 61536a2f4eeb8c251b6fc538acdc0961 156 Pfam PF00588 SpoU rRNA Methylase family 9 140 3.5E-16 T 22-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 PP4_RS06235 61536a2f4eeb8c251b6fc538acdc0961 156 SUPERFAMILY SSF75217 7 144 1.44E-26 T 22-04-2016 IPR029028 Alpha/beta knot methyltransferases PP4_RS06235 61536a2f4eeb8c251b6fc538acdc0961 156 Gene3D G3DSA:3.40.1280.10 9 143 7.3E-17 T 22-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PP4_RS15465 f55b31dd89bb2ce1998ef49e560beb16 347 PANTHER PTHR30519 235 344 5.7E-100 T 22-04-2016 PP4_RS15465 f55b31dd89bb2ce1998ef49e560beb16 347 PANTHER PTHR30519 4 216 5.7E-100 T 22-04-2016 PP4_RS15465 f55b31dd89bb2ce1998ef49e560beb16 347 PIRSF PIRSF005632 1 343 3.6E-201 T 22-04-2016 IPR016456 Predicted cobalamin-independent methionine synthase, catalytic subunit PP4_RS15465 f55b31dd89bb2ce1998ef49e560beb16 347 SUPERFAMILY SSF51726 7 342 5.23E-68 T 22-04-2016 PP4_RS15465 f55b31dd89bb2ce1998ef49e560beb16 347 Pfam PF01717 Cobalamin-independent synthase, Catalytic domain 5 329 2.6E-36 T 22-04-2016 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal GO:0003871|GO:0008270|GO:0009086 KEGG: 00270+2.1.1.14|KEGG: 00450+2.1.1.14|MetaCyc: PWY-5041|MetaCyc: PWY-6151|MetaCyc: PWY-6936|MetaCyc: PWY-702|UniPathway: UPA00051 PP4_RS15465 f55b31dd89bb2ce1998ef49e560beb16 347 Gene3D G3DSA:3.20.20.210 3 340 2.3E-88 T 22-04-2016 PP4_RS01485 a567395832cc76811fe9f488d6a68965 556 PANTHER PTHR11938:SF50 160 533 2.4E-95 T 22-04-2016 PP4_RS01485 a567395832cc76811fe9f488d6a68965 556 PANTHER PTHR11938 160 533 2.4E-95 T 22-04-2016 PP4_RS01485 a567395832cc76811fe9f488d6a68965 556 Pfam PF01645 Conserved region in glutamate synthase 159 475 4.2E-83 T 22-04-2016 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 PP4_RS01485 a567395832cc76811fe9f488d6a68965 556 PIRSF PIRSF006429 4 545 2.6E-171 T 22-04-2016 IPR024188 Glutamate synthase large subunit-like protein PP4_RS01485 a567395832cc76811fe9f488d6a68965 556 PIRSF PIRSF500060 12 532 1.1E-242 T 22-04-2016 IPR027283 Glutamate synthase large subunit-like protein, bacteria PP4_RS01485 a567395832cc76811fe9f488d6a68965 556 SUPERFAMILY SSF51395 13 495 9.94E-134 T 22-04-2016 PP4_RS01485 a567395832cc76811fe9f488d6a68965 556 Gene3D G3DSA:3.20.20.70 51 512 2.1E-124 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS18330 96ad32c72cea314e2924274dd1a7edf9 452 Gene3D G3DSA:3.40.640.10 71 342 1.3E-80 T 22-04-2016 IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1 GO:0003824 PP4_RS18330 96ad32c72cea314e2924274dd1a7edf9 452 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 256 293 - T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS18330 96ad32c72cea314e2924274dd1a7edf9 452 PANTHER PTHR11986 1 452 2.5E-165 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS18330 96ad32c72cea314e2924274dd1a7edf9 452 Pfam PF00202 Aminotransferase class-III 34 444 1.7E-106 T 22-04-2016 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 PP4_RS18330 96ad32c72cea314e2924274dd1a7edf9 452 Gene3D G3DSA:3.90.1150.10 344 446 7.2E-51 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS18330 96ad32c72cea314e2924274dd1a7edf9 452 Gene3D G3DSA:3.90.1150.10 10 69 7.2E-51 T 22-04-2016 IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2 GO:0003824 PP4_RS18330 96ad32c72cea314e2924274dd1a7edf9 452 PANTHER PTHR11986:SF81 1 452 2.5E-165 T 22-04-2016 PP4_RS18330 96ad32c72cea314e2924274dd1a7edf9 452 SUPERFAMILY SSF53383 13 445 5.04E-125 T 22-04-2016 IPR015424 Pyridoxal phosphate-dependent transferase PP4_RS19875 a568aad10dcd79f5f3031eaa0eb2ee93 312 Pfam PF02535 ZIP Zinc transporter 160 307 1.1E-27 T 22-04-2016 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 PP4_RS19875 a568aad10dcd79f5f3031eaa0eb2ee93 312 PANTHER PTHR11040:SF33 17 24 4.3E-67 T 22-04-2016 PP4_RS19875 a568aad10dcd79f5f3031eaa0eb2ee93 312 PANTHER PTHR11040:SF33 52 312 4.3E-67 T 22-04-2016 PP4_RS19875 a568aad10dcd79f5f3031eaa0eb2ee93 312 PANTHER PTHR11040 17 24 4.3E-67 T 22-04-2016 PP4_RS19875 a568aad10dcd79f5f3031eaa0eb2ee93 312 PANTHER PTHR11040 52 312 4.3E-67 T 22-04-2016 PP4_RS18185 f821ed85e443c7d2ff733f178c5b8357 287 Pfam PF05275 Copper resistance protein B precursor (CopB) 82 287 6.9E-80 T 22-04-2016 IPR007939 Copper resistance B precursor GO:0005507|GO:0006878|GO:0009279 PP4_RS18185 f821ed85e443c7d2ff733f178c5b8357 287 SUPERFAMILY SSF56935 130 259 9.89E-7 T 22-04-2016 PP4_RS09695 eb21e07e8dce83ea8de467a55db9b562 302 Pfam PF00294 pfkB family carbohydrate kinase 3 295 1.6E-68 T 22-04-2016 IPR011611 Carbohydrate kinase PfkB PP4_RS09695 eb21e07e8dce83ea8de467a55db9b562 302 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 248 261 - T 22-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 PP4_RS09695 eb21e07e8dce83ea8de467a55db9b562 302 TIGRFAM TIGR02152 D_ribokin_bact: ribokinase 5 300 5.3E-109 T 22-04-2016 IPR011877 Ribokinase, bacterial type GO:0004747|GO:0006014 KEGG: 00030+2.7.1.15|UniPathway: UPA00916 PP4_RS09695 eb21e07e8dce83ea8de467a55db9b562 302 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 39 63 - T 22-04-2016 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 PP4_RS09695 eb21e07e8dce83ea8de467a55db9b562 302 Gene3D G3DSA:3.40.1190.20 2 300 9.0E-95 T 22-04-2016 IPR029056 Ribokinase-like PP4_RS09695 eb21e07e8dce83ea8de467a55db9b562 302 SUPERFAMILY SSF53613 3 300 1.04E-83 T 22-04-2016 IPR029056 Ribokinase-like PP4_RS09695 eb21e07e8dce83ea8de467a55db9b562 302 PANTHER PTHR10584:SF184 1 300 2.8E-94 T 22-04-2016 PP4_RS09695 eb21e07e8dce83ea8de467a55db9b562 302 PANTHER PTHR10584 1 300 2.8E-94 T 22-04-2016 PP4_RS09695 eb21e07e8dce83ea8de467a55db9b562 302 PRINTS PR00990 Ribokinase signature 106 119 6.5E-34 T 22-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PP4_RS09695 eb21e07e8dce83ea8de467a55db9b562 302 PRINTS PR00990 Ribokinase signature 219 230 6.5E-34 T 22-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PP4_RS09695 eb21e07e8dce83ea8de467a55db9b562 302 PRINTS PR00990 Ribokinase signature 34 53 6.5E-34 T 22-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PP4_RS09695 eb21e07e8dce83ea8de467a55db9b562 302 PRINTS PR00990 Ribokinase signature 175 190 6.5E-34 T 22-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PP4_RS09695 eb21e07e8dce83ea8de467a55db9b562 302 PRINTS PR00990 Ribokinase signature 7 28 6.5E-34 T 22-04-2016 IPR002139 Ribokinase GO:0004747|GO:0006014 PP4_RS18835 88bd83ed56e8cdcfdee836ced1339935 124 Pfam PF07332 Putative Actinobacterial Holin-X, holin superfamily III 13 121 7.6E-18 T 22-04-2016 IPR009937 Putative Actinobacterial Holin-X, holin superfamily III PP4_RS16310 00b94922db8f9d96b623c264a439adb9 791 Pfam PF06761 Intracellular multiplication and human macrophage-killing 110 415 7.9E-70 T 22-04-2016 IPR009612 ImcF-related PP4_RS16310 00b94922db8f9d96b623c264a439adb9 791 PANTHER PTHR36153 22 776 1.0E-164 T 22-04-2016 PP4_RS16310 00b94922db8f9d96b623c264a439adb9 791 Pfam PF06744 Type VI secretion protein IcmF C-terminal 528 722 9.1E-54 T 22-04-2016 IPR010623 Type VI secretion system IcmF, C-terminal PP4_RS16310 00b94922db8f9d96b623c264a439adb9 791 PANTHER PTHR36153:SF1 22 776 1.0E-164 T 22-04-2016 PP4_RS16310 00b94922db8f9d96b623c264a439adb9 791 TIGRFAM TIGR03348 VI_IcmF: type VI secretion protein IcmF 14 770 1.8E-178 T 22-04-2016 IPR017731 Type VI secretion system, IcmF PP4_RS01735 44aa214cc8ec1d2dfcc1c428089f8a06 278 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 26 101 1.2E-17 T 22-04-2016 IPR022385 Rhs repeat-associated core GO:0097264 PP4_RS22680 fd29a95822b00773d317cc7f368c4a51 110 Pfam PF12088 Protein of unknown function (DUF3565) 47 102 2.2E-30 T 22-04-2016 IPR021948 Protein of unknown function DUF3565 PP4_RS08855 c5191faceea6ac2ea7bc91dc41ab0f9c 741 SUPERFAMILY SSF53659 4 740 0.0 T 22-04-2016 PP4_RS08855 c5191faceea6ac2ea7bc91dc41ab0f9c 741 TIGRFAM TIGR00178 monomer_idh: isocitrate dehydrogenase, NADP-dependent 4 741 0.0 T 22-04-2016 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 PP4_RS08855 c5191faceea6ac2ea7bc91dc41ab0f9c 741 Pfam PF03971 Monomeric isocitrate dehydrogenase 6 738 0.0 T 22-04-2016 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 PP4_RS08855 c5191faceea6ac2ea7bc91dc41ab0f9c 741 PANTHER PTHR36999 1 741 0.0 T 22-04-2016 PP4_RS08855 c5191faceea6ac2ea7bc91dc41ab0f9c 741 PIRSF PIRSF009407 1 741 0.0 T 22-04-2016 IPR004436 Isocitrate dehydrogenase NADP-dependent, monomeric GO:0004450|GO:0006099|GO:0055114 KEGG: 00020+1.1.1.42|KEGG: 00480+1.1.1.42|KEGG: 00720+1.1.1.42|MetaCyc: PWY-5913|MetaCyc: PWY-6549|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7124|MetaCyc: PWY-7254|MetaCyc: PWY-7268 PP4_RS08855 c5191faceea6ac2ea7bc91dc41ab0f9c 741 Gene3D G3DSA:3.40.718.10 539 645 2.5E-36 T 22-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 PP4_RS08855 c5191faceea6ac2ea7bc91dc41ab0f9c 741 Gene3D G3DSA:3.40.718.10 147 281 2.5E-36 T 22-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 PP4_RS08855 c5191faceea6ac2ea7bc91dc41ab0f9c 741 Gene3D G3DSA:3.40.718.10 340 363 2.5E-36 T 22-04-2016 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 PP4_RS15640 60f99a54184200843d846c9b6e1ced8a 198 PANTHER PTHR30462 7 198 1.0E-18 T 22-04-2016 PP4_RS15640 60f99a54184200843d846c9b6e1ced8a 198 Pfam PF04403 Paraquat-inducible protein A 46 195 2.8E-38 T 22-04-2016 IPR007498 Paraquat-inducible protein A PP4_RS03490 2c65c5e4b9cd9977fdf12ba38587a9b9 114 Pfam PF05899 Protein of unknown function (DUF861) 39 111 5.7E-26 T 22-04-2016 IPR008579 Domain of unknown function DUF861, cupin-3 KEGG: 00230+3.5.3.26|MetaCyc: PWY-5692|MetaCyc: PWY-5698 PP4_RS03490 2c65c5e4b9cd9977fdf12ba38587a9b9 114 SUPERFAMILY SSF51182 20 113 7.57E-20 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS03490 2c65c5e4b9cd9977fdf12ba38587a9b9 114 Gene3D G3DSA:2.60.120.10 21 113 5.8E-34 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS12035 6a2bea71127b3bb5c907c475ffbfc1d9 213 SUPERFAMILY SSF109998 21 159 6.15E-27 T 22-04-2016 IPR027304 Trigger factor/SurA domain PP4_RS12035 6a2bea71127b3bb5c907c475ffbfc1d9 213 Pfam PF13624 SurA N-terminal domain 20 136 6.8E-17 T 22-04-2016 PP4_RS12035 6a2bea71127b3bb5c907c475ffbfc1d9 213 PANTHER PTHR10657:SF11 3 160 1.9E-17 T 22-04-2016 PP4_RS12035 6a2bea71127b3bb5c907c475ffbfc1d9 213 PANTHER PTHR10657 3 160 1.9E-17 T 22-04-2016 PP4_RS15540 20063c3c28607e7c800a828c950d72ae 139 SUPERFAMILY SSF51182 7 129 1.22E-33 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS15540 20063c3c28607e7c800a828c950d72ae 139 Pfam PF07883 Cupin domain 42 102 4.7E-9 T 22-04-2016 IPR013096 Cupin 2, conserved barrel PP4_RS15540 20063c3c28607e7c800a828c950d72ae 139 PANTHER PTHR33570:SF5 1 130 2.2E-56 T 22-04-2016 PP4_RS15540 20063c3c28607e7c800a828c950d72ae 139 Gene3D G3DSA:2.60.120.10 8 129 1.4E-36 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS15540 20063c3c28607e7c800a828c950d72ae 139 PANTHER PTHR33570 1 130 2.2E-56 T 22-04-2016 PP4_RS05485 59658f9abf4665dbf5c8c03769c17840 418 Pfam PF02653 Branched-chain amino acid transport system / permease component 114 399 3.7E-56 T 22-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 PP4_RS05485 59658f9abf4665dbf5c8c03769c17840 418 PANTHER PTHR30482:SF9 62 416 2.8E-187 T 22-04-2016 PP4_RS05485 59658f9abf4665dbf5c8c03769c17840 418 PANTHER PTHR30482 62 416 2.8E-187 T 22-04-2016 PP4_RS05485 59658f9abf4665dbf5c8c03769c17840 418 Pfam PF11862 Domain of unknown function (DUF3382) 3 105 2.4E-21 T 22-04-2016 IPR021807 High-affinity branched-chain amino acid transport system permease, LivHM, N-terminal PP4_RS04185 7c270849791a9ee9913cc3cbd3d89e7c 211 SUPERFAMILY SSF53474 4 202 6.83E-42 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS04185 7c270849791a9ee9913cc3cbd3d89e7c 211 PANTHER PTHR12277:SF79 17 205 1.5E-59 T 22-04-2016 PP4_RS04185 7c270849791a9ee9913cc3cbd3d89e7c 211 PANTHER PTHR12277 17 205 1.5E-59 T 22-04-2016 PP4_RS04185 7c270849791a9ee9913cc3cbd3d89e7c 211 Pfam PF00975 Thioesterase domain 88 137 2.0E-10 T 22-04-2016 IPR001031 Thioesterase GO:0009058|GO:0016788 PP4_RS04185 7c270849791a9ee9913cc3cbd3d89e7c 211 Gene3D G3DSA:3.40.50.1820 9 206 2.4E-41 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS01540 76e33237725455ab060227b13d7403fb 89 Pfam PF11275 Protein of unknown function (DUF3077) 9 81 1.4E-15 T 22-04-2016 IPR021427 Protein of unknown function DUF3077 PP4_RS12850 b67f5b2beed68f0591b202d6505ce071 161 Pfam PF00866 Ring hydroxylating beta subunit 13 153 7.7E-48 T 22-04-2016 IPR000391 Ring-hydroxylating dioxygenase beta subunit GO:0003824|GO:0006725|GO:0055114 PP4_RS12850 b67f5b2beed68f0591b202d6505ce071 161 TIGRFAM TIGR03232 benzo_1_2_benB: benzoate 1,2-dioxygenase, small subunit 7 161 1.7E-91 T 22-04-2016 IPR017641 Benzoate 1,2-dioxygenase, small subunit GO:0016708|GO:0055114 PP4_RS12850 b67f5b2beed68f0591b202d6505ce071 161 PANTHER PTHR41534 1 161 1.3E-84 T 22-04-2016 PP4_RS12850 b67f5b2beed68f0591b202d6505ce071 161 Gene3D G3DSA:3.10.450.50 2 154 1.4E-52 T 22-04-2016 IPR032710 NTF2-like domain PP4_RS12850 b67f5b2beed68f0591b202d6505ce071 161 PANTHER PTHR41534:SF1 1 161 1.3E-84 T 22-04-2016 PP4_RS12850 b67f5b2beed68f0591b202d6505ce071 161 SUPERFAMILY SSF54427 3 161 5.45E-54 T 22-04-2016 IPR032710 NTF2-like domain PP4_RS21530 c1205613d721e564c62fad2a6a31bce1 77 TIGRFAM TIGR01411 tatAE: twin arginine-targeting protein translocase, TatA/E family 3 47 4.6E-18 T 22-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 PP4_RS21530 c1205613d721e564c62fad2a6a31bce1 77 Hamap MF_00236 Sec-independent protein translocase protein TatA [tatA]. 1 74 22.061 T 22-04-2016 IPR006312 Sec-independent protein translocase protein TatA/E GO:0005886|GO:0008565|GO:0009306|GO:0015031|GO:0016021 PP4_RS21530 c1205613d721e564c62fad2a6a31bce1 77 Pfam PF02416 mttA/Hcf106 family 4 49 3.4E-11 T 22-04-2016 IPR003369 Sec-independent protein translocase protein TatA/B/E GO:0008565|GO:0015031 PP4_RS22315 281fc21872dfadbf0440105167998336 128 Pfam PF01592 NifU-like N terminal domain 2 125 4.3E-57 T 22-04-2016 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 PP4_RS22315 281fc21872dfadbf0440105167998336 128 PANTHER PTHR10093:SF3 1 128 1.3E-98 T 22-04-2016 PP4_RS22315 281fc21872dfadbf0440105167998336 128 SUPERFAMILY SSF82649 1 125 4.19E-48 T 22-04-2016 PP4_RS22315 281fc21872dfadbf0440105167998336 128 PANTHER PTHR10093 1 128 1.3E-98 T 22-04-2016 PP4_RS22315 281fc21872dfadbf0440105167998336 128 TIGRFAM TIGR01999 iscU: FeS cluster assembly scaffold IscU 3 125 5.1E-69 T 22-04-2016 IPR011339 ISC system FeS cluster assembly, IscU scaffold GO:0005506|GO:0016226|GO:0051536 PP4_RS22315 281fc21872dfadbf0440105167998336 128 Gene3D G3DSA:3.90.1010.10 2 125 8.5E-56 T 22-04-2016 PP4_RS06990 999ac2b38cbdfde72d0dca039f4be68d 155 Gene3D G3DSA:1.20.58.300 1 128 1.3E-37 T 22-04-2016 IPR007809 FlgN-like protein GO:0005515|GO:0044780 PP4_RS06990 999ac2b38cbdfde72d0dca039f4be68d 155 SUPERFAMILY SSF140566 1 128 3.53E-31 T 22-04-2016 IPR007809 FlgN-like protein GO:0005515|GO:0044780 PP4_RS06990 999ac2b38cbdfde72d0dca039f4be68d 155 Pfam PF05130 FlgN protein 1 144 2.7E-29 T 22-04-2016 IPR007809 FlgN-like protein GO:0005515|GO:0044780 PP4_RS15130 ecbcfd279a484f7799c6f547fe67e4f7 490 Pfam PF03235 Protein of unknown function DUF262 49 136 1.9E-20 T 22-04-2016 IPR004919 Domain of unknown function DUF262 PP4_RS15130 ecbcfd279a484f7799c6f547fe67e4f7 490 PANTHER PTHR35149:SF2 52 263 5.8E-22 T 22-04-2016 PP4_RS15130 ecbcfd279a484f7799c6f547fe67e4f7 490 PANTHER PTHR35149 52 263 5.8E-22 T 22-04-2016 PP4_RS00955 92b6759c416cb652ab4a59d305d10cc0 255 Gene3D G3DSA:3.40.50.10090 131 247 1.6E-9 T 22-04-2016 PP4_RS00955 92b6759c416cb652ab4a59d305d10cc0 255 Gene3D G3DSA:3.40.50.10090 2 118 3.2E-10 T 22-04-2016 PP4_RS00955 92b6759c416cb652ab4a59d305d10cc0 255 PANTHER PTHR38042 1 255 1.5E-60 T 22-04-2016 PP4_RS00955 92b6759c416cb652ab4a59d305d10cc0 255 SUPERFAMILY SSF69618 4 247 2.88E-51 T 22-04-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PP4_RS00955 92b6759c416cb652ab4a59d305d10cc0 255 Pfam PF02602 Uroporphyrinogen-III synthase HemD 17 243 8.6E-37 T 22-04-2016 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase GO:0004852|GO:0033014 KEGG: 00860+4.2.1.75|MetaCyc: PWY-5188|MetaCyc: PWY-5189|UniPathway: UPA00251 PP4_RS00955 92b6759c416cb652ab4a59d305d10cc0 255 PANTHER PTHR38042:SF1 1 255 1.5E-60 T 22-04-2016 PP4_RS01825 8366234e14d94113d8d87dd436b7e6d5 295 SMART SM00563 84 226 1.1E-15 T 22-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 PP4_RS01825 8366234e14d94113d8d87dd436b7e6d5 295 SUPERFAMILY SSF69593 12 288 1.14E-51 T 22-04-2016 PP4_RS01825 8366234e14d94113d8d87dd436b7e6d5 295 PANTHER PTHR10983 1 291 7.9E-125 T 22-04-2016 PP4_RS01825 8366234e14d94113d8d87dd436b7e6d5 295 Pfam PF01553 Acyltransferase 72 225 5.5E-15 T 22-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 PP4_RS01825 8366234e14d94113d8d87dd436b7e6d5 295 PANTHER PTHR10983:SF15 1 291 7.9E-125 T 22-04-2016 PP4_RS27275 f888b256e4a8d033bfe7a7351a238e4e 135 Pfam PF14567 SMI1-KNR4 cell-wall 2 133 2.1E-45 T 22-04-2016 PP4_RS27275 f888b256e4a8d033bfe7a7351a238e4e 135 Gene3D G3DSA:3.40.1580.10 2 135 1.0E-64 T 22-04-2016 IPR018958 SMI1/KNR4-like domain PP4_RS27275 f888b256e4a8d033bfe7a7351a238e4e 135 SUPERFAMILY SSF160631 2 134 1.44E-44 T 22-04-2016 PP4_RS19580 e2e191cd826607703351e4d2396e93a2 144 Pfam PF02472 Biopolymer transport protein ExbD/TolR 8 136 1.2E-27 T 22-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 PP4_RS19580 e2e191cd826607703351e4d2396e93a2 144 PANTHER PTHR30558:SF5 1 143 7.0E-50 T 22-04-2016 PP4_RS19580 e2e191cd826607703351e4d2396e93a2 144 PANTHER PTHR30558 1 143 7.0E-50 T 22-04-2016 PP4_RS24825 33742e56bc379e1fff068cf23696c112 113 Pfam PF04355 SmpA / OmlA family 30 95 1.9E-15 T 22-04-2016 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 PP4_RS22770 5eca6de5c828e5f84849cda89e3fe3e6 388 SUPERFAMILY SSF69593 88 161 2.35E-6 T 22-04-2016 PP4_RS22770 5eca6de5c828e5f84849cda89e3fe3e6 388 PANTHER PTHR30068:SF3 1 326 6.5E-182 T 22-04-2016 PP4_RS22770 5eca6de5c828e5f84849cda89e3fe3e6 388 PANTHER PTHR30068:SF3 343 383 6.5E-182 T 22-04-2016 PP4_RS22770 5eca6de5c828e5f84849cda89e3fe3e6 388 PANTHER PTHR30068 1 326 6.5E-182 T 22-04-2016 PP4_RS22770 5eca6de5c828e5f84849cda89e3fe3e6 388 PANTHER PTHR30068 343 383 6.5E-182 T 22-04-2016 PP4_RS22770 5eca6de5c828e5f84849cda89e3fe3e6 388 Gene3D G3DSA:3.40.1130.10 77 218 1.3E-5 T 22-04-2016 PP4_RS22770 5eca6de5c828e5f84849cda89e3fe3e6 388 Pfam PF01553 Acyltransferase 88 195 7.0E-9 T 22-04-2016 IPR002123 Phospholipid/glycerol acyltransferase GO:0008152|GO:0016746 PP4_RS22385 2bb8788f9c654ed8259aed033a497284 471 SUPERFAMILY SSF51905 415 471 2.85E-49 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS22385 2bb8788f9c654ed8259aed033a497284 471 SUPERFAMILY SSF51905 55 273 2.85E-49 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS22385 2bb8788f9c654ed8259aed033a497284 471 Gene3D G3DSA:3.50.50.60 415 471 9.1E-54 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS22385 2bb8788f9c654ed8259aed033a497284 471 Gene3D G3DSA:3.50.50.60 191 272 9.1E-54 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS22385 2bb8788f9c654ed8259aed033a497284 471 Gene3D G3DSA:3.50.50.60 50 131 9.1E-54 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS22385 2bb8788f9c654ed8259aed033a497284 471 PANTHER PTHR13847 343 471 7.8E-46 T 22-04-2016 PP4_RS22385 2bb8788f9c654ed8259aed033a497284 471 PANTHER PTHR13847 14 283 7.8E-46 T 22-04-2016 PP4_RS22385 2bb8788f9c654ed8259aed033a497284 471 Pfam PF01266 FAD dependent oxidoreductase 56 453 2.9E-49 T 22-04-2016 IPR006076 FAD dependent oxidoreductase GO:0016491|GO:0055114 PP4_RS27040 2877d0bf88a45c06faa3ec64c719b706 142 PANTHER PTHR30558:SF9 11 137 2.1E-67 T 22-04-2016 PP4_RS27040 2877d0bf88a45c06faa3ec64c719b706 142 TIGRFAM TIGR02803 ExbD_1: TonB system transport protein ExbD 15 137 2.7E-70 T 22-04-2016 IPR014170 TonB system transport protein ExbD type-1 GO:0006810|GO:0016020 PP4_RS27040 2877d0bf88a45c06faa3ec64c719b706 142 PANTHER PTHR30558 11 137 2.1E-67 T 22-04-2016 PP4_RS27040 2877d0bf88a45c06faa3ec64c719b706 142 Pfam PF02472 Biopolymer transport protein ExbD/TolR 14 134 1.6E-28 T 22-04-2016 IPR003400 Biopolymer transport protein ExbD/TolR GO:0005215|GO:0006810|GO:0016020 PP4_RS22095 b5fbd460e4788fcf630b3041c0900279 459 Pfam PF03573 outer membrane porin, OprD family 44 458 2.0E-127 T 22-04-2016 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 PP4_RS22095 b5fbd460e4788fcf630b3041c0900279 459 PANTHER PTHR34596 1 23 3.2E-109 T 22-04-2016 PP4_RS22095 b5fbd460e4788fcf630b3041c0900279 459 PANTHER PTHR34596 40 459 3.2E-109 T 22-04-2016 PP4_RS22095 b5fbd460e4788fcf630b3041c0900279 459 Gene3D G3DSA:2.40.160.10 51 459 2.3E-122 T 22-04-2016 IPR023614 Porin domain PP4_RS00740 8fdb1bb60df7ff2517228e5ba20d7828 104 Pfam PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch 13 96 1.3E-35 T 22-04-2016 IPR024605 NAD(P) transhydrogenase, alpha subunit, C-terminal KEGG: 00760+1.6.1.2 PP4_RS00740 8fdb1bb60df7ff2517228e5ba20d7828 104 PANTHER PTHR10160 12 97 8.3E-32 T 22-04-2016 PP4_RS00740 8fdb1bb60df7ff2517228e5ba20d7828 104 PANTHER PTHR10160:SF19 12 97 8.3E-32 T 22-04-2016 PP4_RS07700 d73e0cc2a4d2f1236998676922f690a0 227 Pfam PF13386 Cytochrome C biogenesis protein transmembrane region 11 214 7.3E-56 T 22-04-2016 PP4_RS07700 d73e0cc2a4d2f1236998676922f690a0 227 PANTHER PTHR42208 1 225 9.2E-68 T 22-04-2016 PP4_RS07700 d73e0cc2a4d2f1236998676922f690a0 227 PANTHER PTHR42208:SF1 1 225 9.2E-68 T 22-04-2016 PP4_RS17210 9001f5bf9a44591d8e6e0bb680d82419 208 PANTHER PTHR30086 1 208 2.6E-22 T 22-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PP4_RS17210 9001f5bf9a44591d8e6e0bb680d82419 208 Pfam PF01810 LysE type translocator 15 196 1.2E-16 T 22-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PP4_RS25275 f4d846b931b95eb72d90868f6d30fbf2 480 PANTHER PTHR30624:SF10 13 480 4.4E-157 T 22-04-2016 PP4_RS25275 f4d846b931b95eb72d90868f6d30fbf2 480 SUPERFAMILY SSF111283 7 475 3.79E-95 T 22-04-2016 PP4_RS25275 f4d846b931b95eb72d90868f6d30fbf2 480 Pfam PF01523 Putative modulator of DNA gyrase 24 324 2.3E-41 T 22-04-2016 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 KEGG: 00261+3.4.-.-|KEGG: 00310+3.4.-.-|KEGG: 00550+3.4.-.-|KEGG: 00780+3.4.-.- PP4_RS25275 f4d846b931b95eb72d90868f6d30fbf2 480 PANTHER PTHR30624 13 480 4.4E-157 T 22-04-2016 PP4_RS04830 e18549d212967ee24412c9a1088afe99 379 Pfam PF13776 Domain of unknown function (DUF4172) 6 87 9.1E-30 T 22-04-2016 IPR025230 Domain of unknown function DUF4172 PP4_RS04830 e18549d212967ee24412c9a1088afe99 379 Gene3D G3DSA:1.10.10.10 299 371 6.2E-5 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS04830 e18549d212967ee24412c9a1088afe99 379 Gene3D G3DSA:1.10.3290.10 32 298 1.5E-59 T 22-04-2016 IPR003812 Fido domain PP4_RS04830 e18549d212967ee24412c9a1088afe99 379 SUPERFAMILY SSF140931 100 298 7.32E-39 T 22-04-2016 IPR003812 Fido domain PP4_RS04830 e18549d212967ee24412c9a1088afe99 379 PANTHER PTHR13504:SF33 1 379 1.0E-178 T 22-04-2016 PP4_RS04830 e18549d212967ee24412c9a1088afe99 379 PANTHER PTHR13504 1 379 1.0E-178 T 22-04-2016 PP4_RS04830 e18549d212967ee24412c9a1088afe99 379 Pfam PF02661 Fic/DOC family 114 227 1.2E-15 T 22-04-2016 IPR003812 Fido domain PP4_RS24160 e1395fea31e882c6d9bdb8c6fe57dc17 270 Gene3D G3DSA:1.10.10.10 67 104 7.8E-5 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS14390 19af9dd726d9001053c8ef7065b116a2 375 Pfam PF04577 Protein of unknown function (DUF563) 154 346 2.4E-20 T 22-04-2016 IPR007657 Glycosyltransferase AER61, uncharacterised GO:0016757 PP4_RS07145 cef57770e5400298d828ceb437156581 347 PANTHER PTHR10366:SF35 29 344 4.2E-61 T 22-04-2016 PP4_RS07145 cef57770e5400298d828ceb437156581 347 PANTHER PTHR10366 29 344 4.2E-61 T 22-04-2016 PP4_RS07145 cef57770e5400298d828ceb437156581 347 SUPERFAMILY SSF51735 26 344 1.67E-62 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS07145 cef57770e5400298d828ceb437156581 347 Pfam PF01370 NAD dependent epimerase/dehydratase family 30 275 2.0E-40 T 22-04-2016 IPR001509 NAD-dependent epimerase/dehydratase, N-terminal domain GO:0003824|GO:0050662 PP4_RS07145 cef57770e5400298d828ceb437156581 347 Gene3D G3DSA:3.90.25.10 226 343 2.3E-21 T 22-04-2016 PP4_RS07145 cef57770e5400298d828ceb437156581 347 Gene3D G3DSA:3.40.50.720 29 225 5.5E-42 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS17010 38b6f26fecc130d55845e44db665d363 189 SUPERFAMILY SSF55729 1 161 1.24E-28 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS17010 38b6f26fecc130d55845e44db665d363 189 PANTHER PTHR23091:SF210 1 164 1.3E-33 T 22-04-2016 PP4_RS17010 38b6f26fecc130d55845e44db665d363 189 PANTHER PTHR23091 1 164 1.3E-33 T 22-04-2016 PP4_RS17010 38b6f26fecc130d55845e44db665d363 189 Pfam PF00583 Acetyltransferase (GNAT) family 54 135 4.0E-8 T 22-04-2016 IPR000182 GNAT domain GO:0008080 PP4_RS17010 38b6f26fecc130d55845e44db665d363 189 Gene3D G3DSA:3.40.630.30 2 161 1.0E-29 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS15865 c4f3f12b703cc58782b2ecdd62cf4548 304 PANTHER PTHR30537 3 300 1.3E-94 T 22-04-2016 PP4_RS15865 c4f3f12b703cc58782b2ecdd62cf4548 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 10 67 1.6E-18 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS15865 c4f3f12b703cc58782b2ecdd62cf4548 304 PANTHER PTHR30537:SF8 3 300 1.3E-94 T 22-04-2016 PP4_RS15865 c4f3f12b703cc58782b2ecdd62cf4548 304 Gene3D G3DSA:3.40.190.10 94 194 5.8E-29 T 22-04-2016 PP4_RS15865 c4f3f12b703cc58782b2ecdd62cf4548 304 Gene3D G3DSA:1.10.10.10 4 86 8.6E-24 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS15865 c4f3f12b703cc58782b2ecdd62cf4548 304 Pfam PF03466 LysR substrate binding domain 90 299 9.6E-35 T 22-04-2016 IPR005119 LysR, substrate-binding PP4_RS15865 c4f3f12b703cc58782b2ecdd62cf4548 304 SUPERFAMILY SSF53850 91 300 1.12E-34 T 22-04-2016 PP4_RS15865 c4f3f12b703cc58782b2ecdd62cf4548 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 34 44 5.1E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS15865 c4f3f12b703cc58782b2ecdd62cf4548 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 44 55 5.1E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS15865 c4f3f12b703cc58782b2ecdd62cf4548 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 23 34 5.1E-5 T 22-04-2016 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 PP4_RS15865 c4f3f12b703cc58782b2ecdd62cf4548 304 SUPERFAMILY SSF46785 7 86 2.59E-21 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS21225 952b7809a1c71ee3660914dfb77ec072 425 SMART SM01154 35 413 1.9E-185 T 22-04-2016 IPR012548 Protein of unknown function DUF1704 PP4_RS21225 952b7809a1c71ee3660914dfb77ec072 425 Pfam PF08014 Domain of unknown function (DUF1704) 37 410 1.8E-131 T 22-04-2016 IPR012548 Protein of unknown function DUF1704 PP4_RS21225 952b7809a1c71ee3660914dfb77ec072 425 TIGRFAM TIGR02421 QEGLA: conserved hypothetical protein 15 406 8.0E-141 T 22-04-2016 IPR012656 Conserved hypothetical protein CHP02421, QEGLA PP4_RS10425 72dbb5be96b35dd3c1dad462a3fd7e87 458 PANTHER PTHR23511:SF10 8 437 3.5E-90 T 22-04-2016 PP4_RS10425 72dbb5be96b35dd3c1dad462a3fd7e87 458 Gene3D G3DSA:1.20.1250.20 250 433 4.2E-20 T 22-04-2016 PP4_RS10425 72dbb5be96b35dd3c1dad462a3fd7e87 458 Gene3D G3DSA:1.20.1250.20 24 202 4.5E-22 T 22-04-2016 PP4_RS10425 72dbb5be96b35dd3c1dad462a3fd7e87 458 SUPERFAMILY SSF103473 9 437 9.81E-76 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS10425 72dbb5be96b35dd3c1dad462a3fd7e87 458 PANTHER PTHR23511 8 437 3.5E-90 T 22-04-2016 PP4_RS10425 72dbb5be96b35dd3c1dad462a3fd7e87 458 Pfam PF00083 Sugar (and other) transporter 24 438 9.7E-54 T 22-04-2016 IPR005828 Major facilitator, sugar transporter-like GO:0016021|GO:0022857|GO:0055085 PP4_RS10425 72dbb5be96b35dd3c1dad462a3fd7e87 458 ProSitePatterns PS00217 Sugar transport proteins signature 2. 116 141 - T 22-04-2016 IPR005829 Sugar transporter, conserved site GO:0005215|GO:0016021|GO:0055085 PP4_RS22090 95926b11b0909f0cdf160e11d420ecd0 530 Gene3D G3DSA:3.10.105.10 289 500 2.2E-67 T 22-04-2016 PP4_RS22090 95926b11b0909f0cdf160e11d420ecd0 530 SUPERFAMILY SSF53850 26 529 6.66E-146 T 22-04-2016 PP4_RS22090 95926b11b0909f0cdf160e11d420ecd0 530 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 69 450 4.1E-99 T 22-04-2016 IPR000914 Solute-binding protein family 5 domain PP4_RS22090 95926b11b0909f0cdf160e11d420ecd0 530 PANTHER PTHR30290:SF14 25 529 3.2E-196 T 22-04-2016 PP4_RS22090 95926b11b0909f0cdf160e11d420ecd0 530 Gene3D G3DSA:3.90.76.10 35 214 2.3E-47 T 22-04-2016 PP4_RS22090 95926b11b0909f0cdf160e11d420ecd0 530 PIRSF PIRSF002741 23 527 1.5E-113 T 22-04-2016 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 PP4_RS22090 95926b11b0909f0cdf160e11d420ecd0 530 PANTHER PTHR30290 25 529 3.2E-196 T 22-04-2016 PP4_RS11075 7b0c58e0d679b4c9f2e20f6ce0497eab 468 PIRSF PIRSF002744 1 464 4.8E-96 T 22-04-2016 IPR026030 Purine-cytosine permease Fcy2/21/22 GO:0005215|GO:0016021|GO:0055085 PP4_RS11075 7b0c58e0d679b4c9f2e20f6ce0497eab 468 PANTHER PTHR31806 11 465 9.6E-90 T 22-04-2016 PP4_RS11075 7b0c58e0d679b4c9f2e20f6ce0497eab 468 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 18 439 7.7E-45 T 22-04-2016 IPR001248 Purine-cytosine permease GO:0005215|GO:0016020|GO:0055085 PP4_RS05855 d9e57fe1a019852bca6902e72f1de9d1 68 Gene3D G3DSA:1.20.5.300 2 47 1.8E-15 T 22-04-2016 PP4_RS05855 d9e57fe1a019852bca6902e72f1de9d1 68 PANTHER PTHR36508 1 68 5.8E-20 T 22-04-2016 PP4_RS05855 d9e57fe1a019852bca6902e72f1de9d1 68 Hamap MF_00715 Protein SlyX [slyX]. 2 68 15.521 T 22-04-2016 IPR007236 SlyX PP4_RS05855 d9e57fe1a019852bca6902e72f1de9d1 68 Pfam PF04102 SlyX 3 68 8.0E-22 T 22-04-2016 IPR007236 SlyX PP4_RS04530 f631cad2c6e7f1a7cd0b02742dfce23b 199 Pfam PF01810 LysE type translocator 15 198 4.3E-47 T 22-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PP4_RS04530 f631cad2c6e7f1a7cd0b02742dfce23b 199 PANTHER PTHR30086:SF0 1 199 8.4E-87 T 22-04-2016 PP4_RS04530 f631cad2c6e7f1a7cd0b02742dfce23b 199 PANTHER PTHR30086 1 199 8.4E-87 T 22-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PP4_RS00420 973ca156f3e2ea7fa3428a7c0ac4a97c 357 PIRSF PIRSF029285 2 356 2.2E-162 T 22-04-2016 IPR014553 Predicted aminopeptidase PP4_RS00420 973ca156f3e2ea7fa3428a7c0ac4a97c 357 Pfam PF10023 Putative aminopeptidase 32 350 1.8E-136 T 22-04-2016 IPR014553 Predicted aminopeptidase PP4_RS02675 6e8b8ab41323d511a50941146bc05223 261 PANTHER PTHR30269 13 245 1.8E-52 T 22-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 PP4_RS02675 6e8b8ab41323d511a50941146bc05223 261 Pfam PF01925 Sulfite exporter TauE/SafE 21 253 4.6E-33 T 22-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 PP4_RS02675 6e8b8ab41323d511a50941146bc05223 261 PANTHER PTHR30269:SF0 13 245 1.8E-52 T 22-04-2016 PP4_RS20950 97fb27072c17bdc330dd65d587e54df4 281 PANTHER PTHR21057 1 281 3.3E-213 T 22-04-2016 PP4_RS20950 97fb27072c17bdc330dd65d587e54df4 281 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 18 273 9.2E-118 T 22-04-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 PP4_RS20950 97fb27072c17bdc330dd65d587e54df4 281 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 13 275 48.992 T 22-04-2016 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008152|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 PP4_RS20950 97fb27072c17bdc330dd65d587e54df4 281 SUPERFAMILY SSF51569 3 276 7.24E-105 T 22-04-2016 PP4_RS20950 97fb27072c17bdc330dd65d587e54df4 281 Gene3D G3DSA:3.20.20.70 16 278 3.2E-109 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS20950 97fb27072c17bdc330dd65d587e54df4 281 PANTHER PTHR21057:SF6 1 281 3.3E-213 T 22-04-2016 PP4_RS20950 97fb27072c17bdc330dd65d587e54df4 281 Pfam PF00793 DAHP synthetase I family 10 273 1.1E-75 T 22-04-2016 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674|UniPathway: UPA00030|UniPathway: UPA00357 PP4_RS22845 1190673685bf9b6201a1b2614c6c1c85 322 PANTHER PTHR30087 1 322 9.8E-135 T 22-04-2016 PP4_RS22845 1190673685bf9b6201a1b2614c6c1c85 322 PANTHER PTHR30087:SF0 1 322 9.8E-135 T 22-04-2016 PP4_RS22845 1190673685bf9b6201a1b2614c6c1c85 322 Pfam PF08349 Protein of unknown function (DUF1722) 196 313 4.6E-43 T 22-04-2016 IPR013560 Domain of unknown function DUF1722 PP4_RS22845 1190673685bf9b6201a1b2614c6c1c85 322 Pfam PF04463 Protein of unknown function (DUF523) 12 153 4.6E-35 T 22-04-2016 IPR007553 Domain of unknown function DUF523 PP4_RS22845 1190673685bf9b6201a1b2614c6c1c85 322 PIRSF PIRSF037004 2 322 3.3E-134 T 22-04-2016 IPR017087 Uncharacterised conserved protein UCP037004 PP4_RS27330 be6ce2c0a1283dbda3011844cd2beace 175 Pfam PF12276 Protein of unknown function (DUF3617) 4 169 6.8E-41 T 22-04-2016 IPR022061 Protein of unknown function DUF3617 PP4_RS17615 3b53711c35a8e08385e74f859e92048e 492 PANTHER PTHR32089 142 492 1.4E-127 T 22-04-2016 PP4_RS17615 3b53711c35a8e08385e74f859e92048e 492 PANTHER PTHR32089:SF34 142 492 1.4E-127 T 22-04-2016 PP4_RS17615 3b53711c35a8e08385e74f859e92048e 492 SMART SM00304 250 317 59.0 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS17615 3b53711c35a8e08385e74f859e92048e 492 SMART SM00304 162 215 1.8E-7 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS17615 3b53711c35a8e08385e74f859e92048e 492 SUPERFAMILY SSF58104 183 492 5.49E-78 T 22-04-2016 PP4_RS17615 3b53711c35a8e08385e74f859e92048e 492 SMART SM00283 230 491 1.7E-72 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS17615 3b53711c35a8e08385e74f859e92048e 492 Pfam PF00672 HAMP domain 144 209 5.7E-10 T 22-04-2016 IPR003660 HAMP domain GO:0004871|GO:0007165|GO:0016021 PP4_RS17615 3b53711c35a8e08385e74f859e92048e 492 Gene3D G3DSA:1.10.287.950 245 462 1.3E-57 T 22-04-2016 PP4_RS17615 3b53711c35a8e08385e74f859e92048e 492 Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain 278 488 8.9E-48 T 22-04-2016 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain GO:0004871|GO:0007165|GO:0016020 PP4_RS09930 40463fadee9eee94ab40d980cb87a4c0 165 Gene3D G3DSA:3.30.1330.40 24 164 2.7E-31 T 22-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like PP4_RS09930 40463fadee9eee94ab40d980cb87a4c0 165 PANTHER PTHR11803 28 162 3.8E-23 T 22-04-2016 IPR006175 YjgF/YER057c/UK114 family PP4_RS09930 40463fadee9eee94ab40d980cb87a4c0 165 SUPERFAMILY SSF55298 28 163 1.02E-24 T 22-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like PP4_RS09930 40463fadee9eee94ab40d980cb87a4c0 165 Pfam PF01042 Endoribonuclease L-PSP 46 162 1.7E-18 T 22-04-2016 IPR006175 YjgF/YER057c/UK114 family PP4_RS13710 d3e885bd2bc8075996537cef57c63985 261 PANTHER PTHR11941 9 258 5.5E-95 T 22-04-2016 PP4_RS13710 d3e885bd2bc8075996537cef57c63985 261 Pfam PF00378 Enoyl-CoA hydratase/isomerase 17 260 1.5E-70 T 22-04-2016 IPR001753 Crotonase superfamily GO:0003824|GO:0008152 PP4_RS13710 d3e885bd2bc8075996537cef57c63985 261 Gene3D G3DSA:3.90.226.10 9 258 4.1E-83 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS13710 d3e885bd2bc8075996537cef57c63985 261 SUPERFAMILY SSF52096 8 260 7.63E-82 T 22-04-2016 IPR029045 ClpP/crotonase-like domain PP4_RS13710 d3e885bd2bc8075996537cef57c63985 261 PANTHER PTHR11941:SF54 9 258 5.5E-95 T 22-04-2016 PP4_RS26310 94e5ecf0d08824a2bedb456a48f2ca43 162 SUPERFAMILY SSF53850 27 153 2.66E-17 T 22-04-2016 PP4_RS26310 94e5ecf0d08824a2bedb456a48f2ca43 162 Gene3D G3DSA:3.40.190.10 27 153 1.7E-25 T 22-04-2016 PP4_RS26310 94e5ecf0d08824a2bedb456a48f2ca43 162 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 31 96 5.3E-13 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS26310 94e5ecf0d08824a2bedb456a48f2ca43 162 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 108 153 3.4E-7 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS06290 40643ed1f6085fbde0052c45dc9a2ce3 392 Pfam PF05762 VWA domain containing CoxE-like protein 186 273 3.1E-8 T 22-04-2016 IPR008912 Uncharacterised protein family CoxE-like PP4_RS15595 c312fc3172a95afb42c8cf302f9cb9f7 531 Pfam PF13414 TPR repeat 417 455 5.1E-7 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS15595 c312fc3172a95afb42c8cf302f9cb9f7 531 Gene3D G3DSA:1.25.40.10 385 461 1.1E-10 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS15595 c312fc3172a95afb42c8cf302f9cb9f7 531 Pfam PF13519 von Willebrand factor type A domain 97 203 2.2E-15 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS15595 c312fc3172a95afb42c8cf302f9cb9f7 531 Gene3D G3DSA:3.40.50.410 96 235 2.9E-8 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS15595 c312fc3172a95afb42c8cf302f9cb9f7 531 PANTHER PTHR22550:SF8 1 205 1.0E-14 T 22-04-2016 PP4_RS15595 c312fc3172a95afb42c8cf302f9cb9f7 531 SMART SM00327 94 264 2.4E-7 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS15595 c312fc3172a95afb42c8cf302f9cb9f7 531 SUPERFAMILY SSF53300 94 270 3.12E-19 T 22-04-2016 IPR002035 von Willebrand factor, type A PP4_RS15595 c312fc3172a95afb42c8cf302f9cb9f7 531 SMART SM00028 410 443 1.8E-5 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS15595 c312fc3172a95afb42c8cf302f9cb9f7 531 PANTHER PTHR22550 1 205 1.0E-14 T 22-04-2016 PP4_RS15595 c312fc3172a95afb42c8cf302f9cb9f7 531 SUPERFAMILY SSF48452 364 465 5.36E-11 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS04605 2548ded3b99538be60c98cfa9354b0d0 132 SUPERFAMILY SSF54427 1 131 4.09E-27 T 22-04-2016 IPR032710 NTF2-like domain PP4_RS04605 2548ded3b99538be60c98cfa9354b0d0 132 Pfam PF12680 SnoaL-like domain 7 118 2.3E-16 T 22-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain PP4_RS04605 2548ded3b99538be60c98cfa9354b0d0 132 TIGRFAM TIGR02096 TIGR02096: conserved hypothetical protein 4 132 1.9E-47 T 22-04-2016 IPR011721 Conserved hypothetical protein CHP02096 PP4_RS04605 2548ded3b99538be60c98cfa9354b0d0 132 Gene3D G3DSA:3.10.450.50 1 131 1.7E-25 T 22-04-2016 IPR032710 NTF2-like domain PP4_RS00935 626b5b8d04fc733bf97daea99e559b0d 220 SUPERFAMILY SSF47616 75 205 1.85E-19 T 22-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like PP4_RS00935 626b5b8d04fc733bf97daea99e559b0d 220 Gene3D G3DSA:1.20.1050.10 80 214 1.4E-28 T 22-04-2016 IPR010987 Glutathione S-transferase, C-terminal-like PP4_RS00935 626b5b8d04fc733bf97daea99e559b0d 220 Pfam PF13417 Glutathione S-transferase, N-terminal domain 4 76 2.2E-17 T 22-04-2016 IPR004045 Glutathione S-transferase, N-terminal GO:0005515 PP4_RS00935 626b5b8d04fc733bf97daea99e559b0d 220 PANTHER PTHR11260 2 205 1.2E-20 T 22-04-2016 PP4_RS00935 626b5b8d04fc733bf97daea99e559b0d 220 SUPERFAMILY SSF52833 1 95 1.14E-18 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS00935 626b5b8d04fc733bf97daea99e559b0d 220 Pfam PF00043 Glutathione S-transferase, C-terminal domain 123 191 6.6E-5 T 22-04-2016 IPR004046 Glutathione S-transferase, C-terminal PP4_RS00935 626b5b8d04fc733bf97daea99e559b0d 220 Gene3D G3DSA:3.40.30.10 1 79 2.3E-21 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS04930 2a6eaf67effd8174b1d29c7f36cc5cf1 429 PANTHER PTHR34596 10 429 2.0E-175 T 22-04-2016 PP4_RS04930 2a6eaf67effd8174b1d29c7f36cc5cf1 429 Gene3D G3DSA:2.40.160.10 42 429 2.1E-157 T 22-04-2016 IPR023614 Porin domain PP4_RS04930 2a6eaf67effd8174b1d29c7f36cc5cf1 429 Pfam PF03573 outer membrane porin, OprD family 38 427 1.1E-162 T 22-04-2016 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 PP4_RS22675 9bd2bc0d5964d59df44a39cf832ec695 161 SUPERFAMILY SSF54534 3 141 7.86E-36 T 22-04-2016 PP4_RS22675 9bd2bc0d5964d59df44a39cf832ec695 161 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 6 137 6.5E-12 T 22-04-2016 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain GO:0006457 PP4_RS22675 9bd2bc0d5964d59df44a39cf832ec695 161 Gene3D G3DSA:3.10.50.40 123 141 5.4E-19 T 22-04-2016 PP4_RS22675 9bd2bc0d5964d59df44a39cf832ec695 161 Gene3D G3DSA:3.10.50.40 4 69 5.4E-19 T 22-04-2016 PP4_RS22675 9bd2bc0d5964d59df44a39cf832ec695 161 PANTHER PTHR10516 130 161 5.6E-38 T 22-04-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type PP4_RS22675 9bd2bc0d5964d59df44a39cf832ec695 161 PANTHER PTHR10516 3 74 5.6E-38 T 22-04-2016 IPR023566 Peptidyl-prolyl cis-trans isomerase, FKBP-type PP4_RS22675 9bd2bc0d5964d59df44a39cf832ec695 161 PANTHER PTHR10516:SF316 130 161 5.6E-38 T 22-04-2016 PP4_RS22675 9bd2bc0d5964d59df44a39cf832ec695 161 PANTHER PTHR10516:SF316 3 74 5.6E-38 T 22-04-2016 PP4_RS18640 8e899d157e34d34571f7178f404c2482 336 PANTHER PTHR30480:SF7 9 321 3.2E-121 T 22-04-2016 PP4_RS18640 8e899d157e34d34571f7178f404c2482 336 SUPERFAMILY SSF51445 7 287 3.58E-84 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily PP4_RS18640 8e899d157e34d34571f7178f404c2482 336 Pfam PF00933 Glycosyl hydrolase family 3 N terminal domain 11 285 2.4E-78 T 22-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 PP4_RS18640 8e899d157e34d34571f7178f404c2482 336 Hamap MF_00364 Beta-hexosaminidase [nagZ]. 8 334 48.685 T 22-04-2016 IPR022956 Beta-hexosaminidase, bacterial GO:0004563 KEGG: 00511+3.2.1.52|KEGG: 00513+3.2.1.52|KEGG: 00520+3.2.1.52|KEGG: 00531+3.2.1.52|KEGG: 00603+3.2.1.52|KEGG: 00604+3.2.1.52|MetaCyc: PWY-6902|UniPathway: UPA00544 PP4_RS18640 8e899d157e34d34571f7178f404c2482 336 ProSitePatterns PS00775 Glycosyl hydrolases family 3 active site. 234 251 - T 22-04-2016 IPR019800 Glycoside hydrolase, family 3, active site GO:0004553|GO:0005975 PP4_RS18640 8e899d157e34d34571f7178f404c2482 336 Gene3D G3DSA:3.20.20.300 9 287 1.5E-91 T 22-04-2016 IPR001764 Glycoside hydrolase, family 3, N-terminal GO:0004553|GO:0005975 PP4_RS18640 8e899d157e34d34571f7178f404c2482 336 PANTHER PTHR30480 9 321 3.2E-121 T 22-04-2016 PP4_RS07015 158fad40ed30ef0290db1b8694bb6815 136 PANTHER PTHR30435:SF12 2 136 2.6E-45 T 22-04-2016 PP4_RS07015 158fad40ed30ef0290db1b8694bb6815 136 ProSitePatterns PS00588 Flagella basal body rod proteins signature. 15 35 - T 22-04-2016 IPR019776 Flagellar basal body rod protein, conserved site PP4_RS07015 158fad40ed30ef0290db1b8694bb6815 136 TIGRFAM TIGR01396 FlgB: flagellar basal-body rod protein FlgB 5 134 3.3E-39 T 22-04-2016 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 PP4_RS07015 158fad40ed30ef0290db1b8694bb6815 136 Pfam PF00460 Flagella basal body rod protein 11 39 4.8E-8 T 22-04-2016 IPR001444 Flagellar basal body rod protein, N-terminal GO:0071973 PP4_RS07015 158fad40ed30ef0290db1b8694bb6815 136 PIRSF PIRSF002889 1 136 8.6E-46 T 22-04-2016 IPR006300 Flagellar basal-body rod protein FlgB GO:0030694|GO:0071973 PP4_RS07015 158fad40ed30ef0290db1b8694bb6815 136 PANTHER PTHR30435 2 136 2.6E-45 T 22-04-2016 PP4_RS18195 15999db851a5e87decda481e1c2f33b3 145 ProDom PD085709 MEMBRANE RP436 UNCHARACTERIZED INTEGRAL PREDICTED TRANSMEMBRANE 1 66 1.0E-5 T 22-04-2016 IPR020143 Uncharacterised protein family, RP436 PP4_RS18195 15999db851a5e87decda481e1c2f33b3 145 PANTHER PTHR30353:SF12 1 145 2.9E-52 T 22-04-2016 PP4_RS18195 15999db851a5e87decda481e1c2f33b3 145 PANTHER PTHR30353 1 145 2.9E-52 T 22-04-2016 IPR032818 DedA family PP4_RS18195 15999db851a5e87decda481e1c2f33b3 145 Pfam PF09335 SNARE associated Golgi protein 19 136 7.1E-14 T 22-04-2016 IPR032816 SNARE associated Golgi protein PP4_RS00485 af870c4c15d84c1c843081d52fcc5056 67 Pfam PF11137 Protein of unknown function (DUF2909) 2 61 7.4E-19 T 22-04-2016 IPR021313 Protein of unknown function DUF2909 PP4_RS25090 30eeee5711ec3fc11d9dc7754d653eae 236 Pfam PF03886 ABC-type transport auxiliary lipoprotein component 30 185 5.2E-39 T 22-04-2016 IPR005586 ABC-type transport auxiliary lipoprotein component PP4_RS25090 30eeee5711ec3fc11d9dc7754d653eae 236 Gene3D G3DSA:3.40.50.10610 20 192 4.6E-16 T 22-04-2016 IPR005586 ABC-type transport auxiliary lipoprotein component PP4_RS25090 30eeee5711ec3fc11d9dc7754d653eae 236 SUPERFAMILY SSF159594 29 189 8.11E-25 T 22-04-2016 PP4_RS12020 39dd90c1132418470d197a1b7dd6e63e 218 Pfam PF02630 SCO1/SenC 42 150 7.6E-14 T 22-04-2016 IPR003782 Copper chaperone SCO1/SenC PP4_RS12020 39dd90c1132418470d197a1b7dd6e63e 218 SUPERFAMILY SSF52833 48 198 8.34E-30 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS12020 39dd90c1132418470d197a1b7dd6e63e 218 Gene3D G3DSA:3.40.30.10 20 200 3.9E-30 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS12020 39dd90c1132418470d197a1b7dd6e63e 218 PANTHER PTHR12151 50 201 1.2E-25 T 22-04-2016 IPR003782 Copper chaperone SCO1/SenC PP4_RS22210 7c8ce6938764edee5e26a06b76dff206 249 SUPERFAMILY SSF81901 17 215 3.79E-40 T 22-04-2016 PP4_RS22210 7c8ce6938764edee5e26a06b76dff206 249 PANTHER PTHR11102 26 222 1.8E-34 T 22-04-2016 PP4_RS22210 7c8ce6938764edee5e26a06b76dff206 249 Pfam PF08238 Sel1 repeat 41 75 8.5E-5 T 22-04-2016 IPR006597 Sel1-like repeat PP4_RS22210 7c8ce6938764edee5e26a06b76dff206 249 Pfam PF08238 Sel1 repeat 77 110 0.0029 T 22-04-2016 IPR006597 Sel1-like repeat PP4_RS22210 7c8ce6938764edee5e26a06b76dff206 249 Pfam PF08238 Sel1 repeat 148 183 1.1E-4 T 22-04-2016 IPR006597 Sel1-like repeat PP4_RS22210 7c8ce6938764edee5e26a06b76dff206 249 Pfam PF08238 Sel1 repeat 115 147 3.2E-7 T 22-04-2016 IPR006597 Sel1-like repeat PP4_RS22210 7c8ce6938764edee5e26a06b76dff206 249 Gene3D G3DSA:1.25.40.10 20 215 8.3E-43 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS22210 7c8ce6938764edee5e26a06b76dff206 249 SMART SM00671 148 183 2.2E-4 T 22-04-2016 IPR006597 Sel1-like repeat PP4_RS22210 7c8ce6938764edee5e26a06b76dff206 249 SMART SM00671 40 75 2.5E-4 T 22-04-2016 IPR006597 Sel1-like repeat PP4_RS22210 7c8ce6938764edee5e26a06b76dff206 249 SMART SM00671 114 147 3.3E-5 T 22-04-2016 IPR006597 Sel1-like repeat PP4_RS22210 7c8ce6938764edee5e26a06b76dff206 249 SMART SM00671 76 111 2.2E-5 T 22-04-2016 IPR006597 Sel1-like repeat PP4_RS21135 dde0feecef10838c17b5272bba6a5e97 229 Pfam PF13852 Protein of unknown function (DUF4197) 29 227 5.4E-74 T 22-04-2016 IPR025245 Protein of unknown function DUF4197 PP4_RS08405 0820da2af193bed43d5c3b58020b2c10 460 ProSitePatterns PS00218 Amino acid permeases signature. 45 75 - T 22-04-2016 IPR004840 Amino acid permease, conserved site GO:0006865|GO:0016021|GO:0055085 PP4_RS08405 0820da2af193bed43d5c3b58020b2c10 460 PIRSF PIRSF006060 1 458 7.8E-69 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS08405 0820da2af193bed43d5c3b58020b2c10 460 PANTHER PTHR11785:SF24 5 447 2.5E-213 T 22-04-2016 PP4_RS08405 0820da2af193bed43d5c3b58020b2c10 460 PANTHER PTHR11785 5 447 2.5E-213 T 22-04-2016 IPR002293 Amino acid/polyamine transporter I GO:0003333|GO:0015171|GO:0016020 PP4_RS08405 0820da2af193bed43d5c3b58020b2c10 460 Pfam PF00324 Amino acid permease 21 446 5.9E-103 T 22-04-2016 IPR004841 Amino acid permease/ SLC12A domain GO:0006810|GO:0016020|GO:0055085 PP4_RS15395 07c2677afbac184981cb30b3bb3bc1b2 95 Pfam PF10048 Predicted integral membrane protein (DUF2282) 35 89 5.2E-25 T 22-04-2016 IPR018740 Protein of unknown function DUF2282, integral membrane PP4_RS22720 d86525f6e5b26e47aa6194d62c2d4329 454 Gene3D G3DSA:2.50.20.10 341 449 3.4E-40 T 22-04-2016 PP4_RS22720 d86525f6e5b26e47aa6194d62c2d4329 454 Gene3D G3DSA:2.50.20.10 160 308 3.4E-40 T 22-04-2016 PP4_RS22720 d86525f6e5b26e47aa6194d62c2d4329 454 Pfam PF07044 Protein of unknown function (DUF1329) 84 449 5.3E-156 T 22-04-2016 IPR010752 Protein of unknown function DUF1329 PP4_RS26550 d9bba1e171201c5cd08c6173fb5eaee3 407 PANTHER PTHR13789 3 404 1.0E-144 T 22-04-2016 PP4_RS26550 d9bba1e171201c5cd08c6173fb5eaee3 407 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 301 317 2.3E-18 T 22-04-2016 PP4_RS26550 d9bba1e171201c5cd08c6173fb5eaee3 407 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 158 173 2.3E-18 T 22-04-2016 PP4_RS26550 d9bba1e171201c5cd08c6173fb5eaee3 407 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 286 301 2.3E-18 T 22-04-2016 PP4_RS26550 d9bba1e171201c5cd08c6173fb5eaee3 407 PRINTS PR00420 Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 6 28 2.3E-18 T 22-04-2016 PP4_RS26550 d9bba1e171201c5cd08c6173fb5eaee3 407 ProSitePatterns PS01304 ubiH/COQ6 monooxygenase family signature. 300 313 - T 22-04-2016 IPR018168 Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6, conserved site GO:0016709|GO:0055114 UniPathway: UPA00232 PP4_RS26550 d9bba1e171201c5cd08c6173fb5eaee3 407 Gene3D G3DSA:3.50.50.60 5 184 2.8E-49 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS26550 d9bba1e171201c5cd08c6173fb5eaee3 407 Gene3D G3DSA:3.50.50.60 274 362 2.8E-49 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS26550 d9bba1e171201c5cd08c6173fb5eaee3 407 PANTHER PTHR13789:SF5 3 404 1.0E-144 T 22-04-2016 PP4_RS26550 d9bba1e171201c5cd08c6173fb5eaee3 407 TIGRFAM TIGR01988 Ubi-OHases: ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family 6 396 2.5E-142 T 22-04-2016 IPR010971 Ubiquinone biosynthesis hydroxylase UbiH/COQ6 GO:0006744|GO:0016709|GO:0050660|GO:0055114 UniPathway: UPA00232 PP4_RS26550 d9bba1e171201c5cd08c6173fb5eaee3 407 SUPERFAMILY SSF51905 282 401 1.39E-62 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS26550 d9bba1e171201c5cd08c6173fb5eaee3 407 SUPERFAMILY SSF51905 3 179 1.39E-62 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS26550 d9bba1e171201c5cd08c6173fb5eaee3 407 Pfam PF01494 FAD binding domain 5 351 1.0E-28 T 22-04-2016 IPR002938 FAD-binding domain GO:0071949 PP4_RS07770 1b6e04220138919d3c13abd5cc62d785 94 Pfam PF06865 Protein of unknown function (DUF1255) 3 92 4.8E-37 T 22-04-2016 IPR009664 Protein of unknown function DUF1255 PP4_RS07770 1b6e04220138919d3c13abd5cc62d785 94 SUPERFAMILY SSF51182 1 92 1.4E-36 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS07770 1b6e04220138919d3c13abd5cc62d785 94 Gene3D G3DSA:2.60.120.10 1 92 3.7E-40 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS07770 1b6e04220138919d3c13abd5cc62d785 94 PANTHER PTHR36540:SF1 1 94 3.5E-49 T 22-04-2016 PP4_RS07770 1b6e04220138919d3c13abd5cc62d785 94 Hamap MF_01537 UPF0345 protein YaiE [yaiE]. 1 93 25.641 T 22-04-2016 IPR009664 Protein of unknown function DUF1255 PP4_RS07770 1b6e04220138919d3c13abd5cc62d785 94 PANTHER PTHR36540 1 94 3.5E-49 T 22-04-2016 PP4_RS06880 4b253a1174e232fe81a9ebdcb5470e40 62 Pfam PF02599 Global regulator protein family 1 53 2.1E-24 T 22-04-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 PP4_RS06880 4b253a1174e232fe81a9ebdcb5470e40 62 ProDom PD009007 STORAGE CARBON REGULATOR RNA-BINDING HOMOLOG CSRA REGULATOR GLOBAL PLASMID RSMA 1 49 4.0E-21 T 22-04-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 PP4_RS06880 4b253a1174e232fe81a9ebdcb5470e40 62 PANTHER PTHR34984 1 62 2.3E-28 T 22-04-2016 PP4_RS06880 4b253a1174e232fe81a9ebdcb5470e40 62 SUPERFAMILY SSF117130 1 55 1.26E-17 T 22-04-2016 PP4_RS06880 4b253a1174e232fe81a9ebdcb5470e40 62 Hamap MF_00167 Carbon storage regulator [csrA]. 1 62 19.971 T 22-04-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 PP4_RS06880 4b253a1174e232fe81a9ebdcb5470e40 62 TIGRFAM TIGR00202 csrA: carbon storage regulator 1 58 7.1E-26 T 22-04-2016 IPR003751 Carbon storage regulator GO:0003723|GO:0006109|GO:0006402 PP4_RS06880 4b253a1174e232fe81a9ebdcb5470e40 62 PANTHER PTHR34984:SF1 1 62 2.3E-28 T 22-04-2016 PP4_RS10055 92ce387e5cb3c66949597037a9d1f33a 351 PANTHER PTHR30238:SF0 14 334 9.9E-158 T 22-04-2016 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 PP4_RS10055 92ce387e5cb3c66949597037a9d1f33a 351 TIGRFAM TIGR03718 R_switched_Alx: integral membrane protein, TerC family 16 322 1.0E-123 T 22-04-2016 IPR022369 Integral membrane protein TerC, riboswitch-linked GO:0016021 PP4_RS10055 92ce387e5cb3c66949597037a9d1f33a 351 Pfam PF03741 Integral membrane protein TerC family 82 291 2.5E-59 T 22-04-2016 IPR005496 Integral membrane protein TerC GO:0016021 PP4_RS10055 92ce387e5cb3c66949597037a9d1f33a 351 PANTHER PTHR30238 14 334 9.9E-158 T 22-04-2016 PP4_RS24910 0abcfbd56d8db4567abb44b65261a999 87 Pfam PF11275 Protein of unknown function (DUF3077) 9 82 1.2E-17 T 22-04-2016 IPR021427 Protein of unknown function DUF3077 PP4_RS00400 af2719a86a4ca22fce44af06b72cf26e 141 PANTHER PTHR33797 1 141 2.2E-59 T 22-04-2016 PP4_RS00400 af2719a86a4ca22fce44af06b72cf26e 141 Pfam PF02566 OsmC-like protein 41 135 3.6E-19 T 22-04-2016 IPR003718 OsmC/Ohr family PP4_RS00400 af2719a86a4ca22fce44af06b72cf26e 141 Gene3D G3DSA:3.30.300.20 1 139 3.8E-52 T 22-04-2016 IPR015946 K homology domain-like, alpha/beta PP4_RS00400 af2719a86a4ca22fce44af06b72cf26e 141 TIGRFAM TIGR03562 osmo_induc_OsmC: peroxiredoxin, OsmC subfamily 2 137 1.1E-61 T 22-04-2016 IPR019904 Peroxiredoxin OsmC GO:0004601|GO:0006979 KEGG: 00480+1.11.1.15 PP4_RS00400 af2719a86a4ca22fce44af06b72cf26e 141 PANTHER PTHR33797:SF1 1 141 2.2E-59 T 22-04-2016 PP4_RS00400 af2719a86a4ca22fce44af06b72cf26e 141 SUPERFAMILY SSF82784 2 137 4.19E-39 T 22-04-2016 IPR003718 OsmC/Ohr family PP4_RS21065 6424a1c689c43d42da6280a8b0514628 548 PANTHER PTHR10110:SF120 5 518 1.0E-176 T 22-04-2016 PP4_RS21065 6424a1c689c43d42da6280a8b0514628 548 TIGRFAM TIGR00831 a_cpa1: Na+/H+ antiporter 8 544 5.4E-129 T 22-04-2016 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria GO:0006812|GO:0015299|GO:0016021 PP4_RS21065 6424a1c689c43d42da6280a8b0514628 548 Pfam PF00999 Sodium/hydrogen exchanger family 8 417 8.4E-73 T 22-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 PP4_RS21065 6424a1c689c43d42da6280a8b0514628 548 PANTHER PTHR10110 5 518 1.0E-176 T 22-04-2016 IPR018422 Cation/H+ exchanger, CPA1 family GO:0006812|GO:0015299|GO:0016021 Reactome: REACT_15518 PP4_RS21205 2667b0badb3b52147c0e2f2ac3d77ea3 137 Pfam PF14346 Domain of unknown function (DUF4398) 32 129 3.4E-28 T 22-04-2016 IPR025511 Domain of unknown function DUF4398 PP4_RS06390 2fafc500e3c52578fe0ba0d9c8529284 286 PIRSF PIRSF028200 6 286 8.0E-104 T 22-04-2016 IPR016875 Uncharacterised conserved protein UCP028200 PP4_RS22725 8ae21e26e5e1436612414b4d300fa6eb 628 Pfam PF06980 Protein of unknown function (DUF1302) 31 628 4.4E-231 T 22-04-2016 IPR010727 Protein of unknown function DUF1302 PP4_RS00365 302ea2e930534823c5125e3f6889605b 269 Gene3D G3DSA:3.20.20.70 2 266 9.0E-105 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS00365 302ea2e930534823c5125e3f6889605b 269 Pfam PF00290 Tryptophan synthase alpha chain 8 262 1.0E-99 T 22-04-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 PP4_RS00365 302ea2e930534823c5125e3f6889605b 269 SUPERFAMILY SSF51366 1 244 5.65E-92 T 22-04-2016 IPR011060 Ribulose-phosphate binding barrel GO:0003824|GO:0008152 PP4_RS00365 302ea2e930534823c5125e3f6889605b 269 ProSitePatterns PS00167 Tryptophan synthase alpha chain signature. 48 61 - T 22-04-2016 IPR018204 Tryptophan synthase, alpha chain, active site GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 PP4_RS00365 302ea2e930534823c5125e3f6889605b 269 PANTHER PTHR10314:SF4 74 130 4.8E-25 T 22-04-2016 PP4_RS00365 302ea2e930534823c5125e3f6889605b 269 PANTHER PTHR10314:SF4 1 51 4.8E-25 T 22-04-2016 PP4_RS00365 302ea2e930534823c5125e3f6889605b 269 TIGRFAM TIGR00262 trpA: tryptophan synthase, alpha subunit 8 258 8.6E-83 T 22-04-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 PP4_RS00365 302ea2e930534823c5125e3f6889605b 269 Hamap MF_00131 Tryptophan synthase alpha chain [trpA]. 14 263 37.006 T 22-04-2016 IPR002028 Tryptophan synthase, alpha chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20|UniPathway: UPA00035 PP4_RS00365 302ea2e930534823c5125e3f6889605b 269 PANTHER PTHR10314 74 130 4.8E-25 T 22-04-2016 PP4_RS00365 302ea2e930534823c5125e3f6889605b 269 PANTHER PTHR10314 1 51 4.8E-25 T 22-04-2016 PP4_RS08645 d564981f85ea91d7b69d07a68a99cea1 286 SUPERFAMILY SSF56399 57 89 5.47E-6 T 22-04-2016 PP4_RS08645 d564981f85ea91d7b69d07a68a99cea1 286 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 17 94 3.8E-15 T 22-04-2016 IPR022385 Rhs repeat-associated core GO:0097264 PP4_RS22450 52d8da58266d86512478f72beabce324 128 PANTHER PTHR39176 34 124 3.4E-15 T 22-04-2016 PP4_RS22450 52d8da58266d86512478f72beabce324 128 PANTHER PTHR39176:SF1 34 124 3.4E-15 T 22-04-2016 PP4_RS22450 52d8da58266d86512478f72beabce324 128 Pfam PF07007 Protein of unknown function (DUF1311) 30 120 5.1E-21 T 22-04-2016 IPR009739 Protein of unknown function DUF1311 PP4_RS06015 095f36c61f44e42b4b921456b331c6ee 373 Pfam PF06804 NlpB/DapX lipoprotein 36 370 3.4E-23 T 22-04-2016 IPR010653 NlpB/DapX lipoprotein PP4_RS07470 d0dde70ddbc7de0aa8c3354b5f76cef4 332 PANTHER PTHR30368 7 332 3.1E-166 T 22-04-2016 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 PP4_RS07470 d0dde70ddbc7de0aa8c3354b5f76cef4 332 PANTHER PTHR30368:SF2 7 332 3.1E-166 T 22-04-2016 PP4_RS07470 d0dde70ddbc7de0aa8c3354b5f76cef4 332 Gene3D G3DSA:3.40.190.10 25 169 1.1E-46 T 22-04-2016 PP4_RS07470 d0dde70ddbc7de0aa8c3354b5f76cef4 332 Gene3D G3DSA:3.40.190.10 193 297 3.3E-23 T 22-04-2016 PP4_RS07470 d0dde70ddbc7de0aa8c3354b5f76cef4 332 SUPERFAMILY SSF53850 22 330 1.05E-80 T 22-04-2016 PP4_RS07470 d0dde70ddbc7de0aa8c3354b5f76cef4 332 Pfam PF13531 Bacterial extracellular solute-binding protein 31 280 1.4E-39 T 22-04-2016 PP4_RS07470 d0dde70ddbc7de0aa8c3354b5f76cef4 332 TIGRFAM TIGR00971 3a0106s03: sulfate ABC transporter, sulfate-binding protein 19 328 9.9E-131 T 22-04-2016 IPR005669 Thiosulphate/Sulfate-binding protein GO:0008272|GO:0015419 PP4_RS07230 fa2cf1daeb608d57184d11402d95cb54 418 PANTHER PTHR37533 222 418 1.7E-38 T 22-04-2016 PP4_RS07230 fa2cf1daeb608d57184d11402d95cb54 418 Pfam PF02120 Flagellar hook-length control protein FliK 288 371 1.9E-17 T 22-04-2016 IPR021136 Flagellar hook-length control protein-like, C-terminal PP4_RS07230 fa2cf1daeb608d57184d11402d95cb54 418 PANTHER PTHR37533:SF2 222 418 1.7E-38 T 22-04-2016 PP4_RS25675 1208fde15d32bab504d53a71c7c38a46 145 Gene3D G3DSA:3.50.80.10 1 144 6.0E-55 T 22-04-2016 IPR023509 D-Tyr tRNAtyr deacylase-like domain PP4_RS25675 1208fde15d32bab504d53a71c7c38a46 145 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 34.5 T 22-04-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 PP4_RS25675 1208fde15d32bab504d53a71c7c38a46 145 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 144 7.6E-55 T 22-04-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 PP4_RS25675 1208fde15d32bab504d53a71c7c38a46 145 SUPERFAMILY SSF69500 1 144 1.44E-54 T 22-04-2016 IPR023509 D-Tyr tRNAtyr deacylase-like domain PP4_RS25675 1208fde15d32bab504d53a71c7c38a46 145 PANTHER PTHR10472 2 144 9.2E-67 T 22-04-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 PP4_RS25675 1208fde15d32bab504d53a71c7c38a46 145 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 2 143 1.1E-50 T 22-04-2016 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0005737|GO:0016788|GO:0019478 PP4_RS08430 f79f77142ad975b421bbe424f33fb872 128 Pfam PF04343 Protein of unknown function, DUF488 4 110 7.2E-28 T 22-04-2016 IPR007438 Protein of unknown function DUF488 PP4_RS08430 f79f77142ad975b421bbe424f33fb872 128 PANTHER PTHR36849 1 116 8.9E-47 T 22-04-2016 PP4_RS08430 f79f77142ad975b421bbe424f33fb872 128 PANTHER PTHR36849:SF1 1 116 8.9E-47 T 22-04-2016 PP4_RS04995 5dc7b558c0b1c9a83942ffd940f03d08 284 SUPERFAMILY SSF51306 77 271 1.05E-64 T 22-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C PP4_RS04995 5dc7b558c0b1c9a83942ffd940f03d08 284 ProSitePatterns PS00760 Signal peptidases I lysine active site. 145 157 - T 22-04-2016 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 PP4_RS04995 5dc7b558c0b1c9a83942ffd940f03d08 284 ProSitePatterns PS00501 Signal peptidases I serine active site. 88 95 - T 22-04-2016 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: REACT_15380 PP4_RS04995 5dc7b558c0b1c9a83942ffd940f03d08 284 PANTHER PTHR12383:SF27 3 268 3.5E-92 T 22-04-2016 PP4_RS04995 5dc7b558c0b1c9a83942ffd940f03d08 284 ProSitePatterns PS00761 Signal peptidases I signature 3. 221 234 - T 22-04-2016 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 PP4_RS04995 5dc7b558c0b1c9a83942ffd940f03d08 284 Gene3D G3DSA:2.10.109.10 216 268 5.4E-54 T 22-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain PP4_RS04995 5dc7b558c0b1c9a83942ffd940f03d08 284 Gene3D G3DSA:2.10.109.10 75 153 5.4E-54 T 22-04-2016 IPR028360 Peptidase S24/S26, beta-ribbon domain PP4_RS04995 5dc7b558c0b1c9a83942ffd940f03d08 284 PANTHER PTHR12383 3 268 3.5E-92 T 22-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 PP4_RS04995 5dc7b558c0b1c9a83942ffd940f03d08 284 Pfam PF00717 Peptidase S24-like 85 167 3.0E-22 T 22-04-2016 IPR019759 Peptidase S24/S26A/S26B PP4_RS04995 5dc7b558c0b1c9a83942ffd940f03d08 284 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 216 235 2.1E-25 T 22-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 PP4_RS04995 5dc7b558c0b1c9a83942ffd940f03d08 284 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 79 95 2.1E-25 T 22-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 PP4_RS04995 5dc7b558c0b1c9a83942ffd940f03d08 284 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 143 155 2.1E-25 T 22-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 PP4_RS04995 5dc7b558c0b1c9a83942ffd940f03d08 284 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 64 266 2.1E-50 T 22-04-2016 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 PP4_RS00445 dea212d1b7cc1ccc99778cec9023049b 352 PANTHER PTHR11228 42 312 5.2E-100 T 22-04-2016 PP4_RS00445 dea212d1b7cc1ccc99778cec9023049b 352 SUPERFAMILY SSF102114 55 268 6.67E-13 T 22-04-2016 PP4_RS00445 dea212d1b7cc1ccc99778cec9023049b 352 PANTHER PTHR11228:SF26 42 312 5.2E-100 T 22-04-2016 PP4_RS00445 dea212d1b7cc1ccc99778cec9023049b 352 Pfam PF04055 Radical SAM superfamily 67 245 4.0E-16 T 22-04-2016 IPR007197 Radical SAM GO:0003824|GO:0051536 PP4_RS00445 dea212d1b7cc1ccc99778cec9023049b 352 Gene3D G3DSA:3.20.20.70 157 269 4.4E-9 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS00445 dea212d1b7cc1ccc99778cec9023049b 352 SMART SM00729 63 288 2.5E-7 T 22-04-2016 IPR006638 Elongator protein 3/MiaB/NifB GO:0003824|GO:0051536 PP4_RS07095 346ed01c2822f0cfe08fabbe63c1671c 133 Gene3D G3DSA:1.20.120.340 8 129 1.6E-33 T 22-04-2016 IPR003713 Flagellar protein FliS GO:0044780 PP4_RS07095 346ed01c2822f0cfe08fabbe63c1671c 133 TIGRFAM TIGR00208 fliS: flagellar protein FliS 6 125 1.6E-25 T 22-04-2016 IPR003713 Flagellar protein FliS GO:0044780 PP4_RS07095 346ed01c2822f0cfe08fabbe63c1671c 133 Pfam PF02561 Flagellar protein FliS 8 126 1.9E-33 T 22-04-2016 IPR003713 Flagellar protein FliS GO:0044780 PP4_RS07095 346ed01c2822f0cfe08fabbe63c1671c 133 PANTHER PTHR34773 1 130 5.0E-31 T 22-04-2016 PP4_RS07095 346ed01c2822f0cfe08fabbe63c1671c 133 PIRSF PIRSF039090 1 133 2.0E-40 T 22-04-2016 IPR003713 Flagellar protein FliS GO:0044780 PP4_RS07095 346ed01c2822f0cfe08fabbe63c1671c 133 SUPERFAMILY SSF101116 9 127 1.31E-33 T 22-04-2016 IPR003713 Flagellar protein FliS GO:0044780 PP4_RS22175 5448f933808f79693f6aedc77e5004dc 217 PANTHER PTHR30177 1 216 3.6E-85 T 22-04-2016 PP4_RS22175 5448f933808f79693f6aedc77e5004dc 217 Gene3D G3DSA:1.10.3720.10 11 204 3.7E-33 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS22175 5448f933808f79693f6aedc77e5004dc 217 PANTHER PTHR30177:SF4 1 216 3.6E-85 T 22-04-2016 PP4_RS22175 5448f933808f79693f6aedc77e5004dc 217 SUPERFAMILY SSF161098 13 203 1.19E-36 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS22175 5448f933808f79693f6aedc77e5004dc 217 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 37 210 9.5E-21 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS23385 623237f26f0e6ff17c80276abd1dac8d 59 Pfam PF13633 Prokaryotic N-terminal methylation site 5 27 3.1E-6 T 22-04-2016 IPR012902 Prokaryotic N-terminal methylation site PP4_RS23385 623237f26f0e6ff17c80276abd1dac8d 59 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 5 27 2.6E-6 T 22-04-2016 IPR012902 Prokaryotic N-terminal methylation site PP4_RS22975 8cbd324b5213a2a09d5f9cbb9d23871e 129 Gene3D G3DSA:3.10.450.50 3 126 2.1E-19 T 22-04-2016 IPR032710 NTF2-like domain PP4_RS22975 8cbd324b5213a2a09d5f9cbb9d23871e 129 Pfam PF13474 SnoaL-like domain 7 126 4.5E-18 T 22-04-2016 IPR009959 Polyketide cyclase SnoaL-like domain PP4_RS22975 8cbd324b5213a2a09d5f9cbb9d23871e 129 SUPERFAMILY SSF54427 4 125 1.33E-23 T 22-04-2016 IPR032710 NTF2-like domain PP4_RS25315 b7f6ab2cff9bf560ebd117e2b821641f 98 Pfam PF09904 Winged helix-turn helix 5 95 3.2E-42 T 22-04-2016 IPR017162 Uncharacterised conserved protein UCP037266 PP4_RS25315 b7f6ab2cff9bf560ebd117e2b821641f 98 PIRSF PIRSF037266 1 98 1.6E-49 T 22-04-2016 IPR017162 Uncharacterised conserved protein UCP037266 PP4_RS24390 a5391007268bc8ca476b618fd393891d 149 PANTHER PTHR18934:SF118 3 127 6.4E-44 T 22-04-2016 PP4_RS24390 a5391007268bc8ca476b618fd393891d 149 Gene3D G3DSA:3.40.50.300 3 130 1.5E-38 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS24390 a5391007268bc8ca476b618fd393891d 149 SUPERFAMILY SSF52540 15 134 9.1E-23 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS24390 a5391007268bc8ca476b618fd393891d 149 Pfam PF00270 DEAD/DEAH box helicase 15 130 4.3E-6 T 22-04-2016 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 PP4_RS24390 a5391007268bc8ca476b618fd393891d 149 PANTHER PTHR18934 3 127 6.4E-44 T 22-04-2016 PP4_RS15150 aa17d8e29e46f2157a8446f710117aea 294 Pfam PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) 24 138 4.0E-10 T 22-04-2016 IPR029464 Type I restriction enzyme R protein, N-terminal domain PP4_RS23430 dec78148d34a7bbf8b1800c1d4e36ed8 766 PANTHER PTHR30462:SF0 1 764 5.5E-276 T 22-04-2016 PP4_RS23430 dec78148d34a7bbf8b1800c1d4e36ed8 766 Pfam PF02470 MlaD protein 635 694 3.4E-7 T 22-04-2016 IPR003399 Mce/MlaD PP4_RS23430 dec78148d34a7bbf8b1800c1d4e36ed8 766 Pfam PF02470 MlaD protein 397 469 1.5E-9 T 22-04-2016 IPR003399 Mce/MlaD PP4_RS23430 dec78148d34a7bbf8b1800c1d4e36ed8 766 Pfam PF02470 MlaD protein 41 134 1.6E-11 T 22-04-2016 IPR003399 Mce/MlaD PP4_RS23430 dec78148d34a7bbf8b1800c1d4e36ed8 766 Pfam PF02470 MlaD protein 280 371 4.8E-11 T 22-04-2016 IPR003399 Mce/MlaD PP4_RS23430 dec78148d34a7bbf8b1800c1d4e36ed8 766 Pfam PF02470 MlaD protein 519 607 8.8E-13 T 22-04-2016 IPR003399 Mce/MlaD PP4_RS23430 dec78148d34a7bbf8b1800c1d4e36ed8 766 Pfam PF02470 MlaD protein 157 217 1.3E-8 T 22-04-2016 IPR003399 Mce/MlaD PP4_RS23430 dec78148d34a7bbf8b1800c1d4e36ed8 766 PANTHER PTHR30462 1 764 5.5E-276 T 22-04-2016 PP4_RS06730 3fbd3f465ad1a0c60da0ea48e2178737 197 Pfam PF04279 Intracellular septation protein A 1 188 1.4E-60 T 22-04-2016 IPR006008 Intracellular septation protein A GO:0016021 PP4_RS06730 3fbd3f465ad1a0c60da0ea48e2178737 197 TIGRFAM TIGR00997 ispZ: intracellular septation protein A 1 189 1.3E-54 T 22-04-2016 IPR006008 Intracellular septation protein A GO:0016021 PP4_RS06730 3fbd3f465ad1a0c60da0ea48e2178737 197 PANTHER PTHR36917 1 197 4.6E-63 T 22-04-2016 PP4_RS06730 3fbd3f465ad1a0c60da0ea48e2178737 197 PANTHER PTHR36917:SF1 1 197 4.6E-63 T 22-04-2016 PP4_RS06730 3fbd3f465ad1a0c60da0ea48e2178737 197 Hamap MF_00189 Probable intracellular septation protein A [yciB]. 1 189 18.025 T 22-04-2016 IPR006008 Intracellular septation protein A GO:0016021 PP4_RS22425 75b94f6093ce64343aa83c73fef79093 275 PANTHER PTHR30043 7 274 3.1E-80 T 22-04-2016 PP4_RS22425 75b94f6093ce64343aa83c73fef79093 275 SUPERFAMILY SSF161098 68 266 6.41E-27 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS22425 75b94f6093ce64343aa83c73fef79093 275 Gene3D G3DSA:1.10.3720.10 68 274 8.6E-22 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS22425 75b94f6093ce64343aa83c73fef79093 275 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 116 271 1.8E-12 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS22425 75b94f6093ce64343aa83c73fef79093 275 PANTHER PTHR30043:SF1 7 274 3.1E-80 T 22-04-2016 PP4_RS18560 ff8bd72bfd8582d2840a64fbce7f10dc 87 Pfam PF14357 Domain of unknown function (DUF4404) 6 87 3.2E-22 T 22-04-2016 IPR025516 Protein of unknown function DUF4404 PP4_RS10025 3747caf40997c267f651c02e387db5b0 145 SMART SM00953 11 135 8.1E-26 T 22-04-2016 IPR014914 RES domain PP4_RS10025 3747caf40997c267f651c02e387db5b0 145 Pfam PF08808 RES domain 3 138 3.1E-22 T 22-04-2016 IPR014914 RES domain PP4_RS04065 253634cc6f1adb7e2be2cdaf09549bc1 492 Pfam PF13372 Alginate export 31 487 3.0E-120 T 22-04-2016 IPR025388 Alginate export domain UniPathway: UPA00286 PP4_RS18065 c4785e4db10fa92c3c10d9b869ed230a 114 PANTHER PTHR34583:SF1 1 114 1.3E-48 T 22-04-2016 PP4_RS18065 c4785e4db10fa92c3c10d9b869ed230a 114 PANTHER PTHR34583 1 114 1.3E-48 T 22-04-2016 PP4_RS18065 c4785e4db10fa92c3c10d9b869ed230a 114 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 6 109 1.9E-25 T 22-04-2016 IPR001133 NADH-ubiquinone oxidoreductase chain 4L/K GO:0016651|GO:0042773|GO:0055114 PP4_RS05460 9480acdaf65e7070ee7155d7f643b24c 535 Gene3D G3DSA:3.50.50.60 101 289 3.8E-33 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS05460 9480acdaf65e7070ee7155d7f643b24c 535 Gene3D G3DSA:3.50.50.60 474 531 3.8E-33 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS05460 9480acdaf65e7070ee7155d7f643b24c 535 PIRSF PIRSF038984 1 535 6.1E-243 T 22-04-2016 IPR028348 FAD dependent protein PP4_RS05460 9480acdaf65e7070ee7155d7f643b24c 535 PANTHER PTHR10617:SF52 471 533 1.4E-169 T 22-04-2016 PP4_RS05460 9480acdaf65e7070ee7155d7f643b24c 535 PANTHER PTHR10617:SF52 76 391 1.4E-169 T 22-04-2016 PP4_RS05460 9480acdaf65e7070ee7155d7f643b24c 535 PANTHER PTHR10617 471 533 1.4E-169 T 22-04-2016 PP4_RS05460 9480acdaf65e7070ee7155d7f643b24c 535 PANTHER PTHR10617 76 391 1.4E-169 T 22-04-2016 PP4_RS05460 9480acdaf65e7070ee7155d7f643b24c 535 SUPERFAMILY SSF51905 101 287 1.02E-34 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS05460 9480acdaf65e7070ee7155d7f643b24c 535 SUPERFAMILY SSF51905 480 530 1.02E-34 T 22-04-2016 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 PP4_RS17270 aee87ba751bc65d9cea5b4b1db031168 766 Pfam PF06934 Fatty acid cis/trans isomerase (CTI) 84 765 1.4E-284 T 22-04-2016 IPR010706 Fatty acid cis-trans isomerase PP4_RS05545 33c58d538ef4e03820d1f09f4a671576 68 Pfam PF07869 Protein of unknown function (DUF1656) 5 60 1.0E-18 T 22-04-2016 IPR012451 Protein of unknown function DUF1656 PP4_RS19730 04f531ee53f69eb627237b3ba6d67709 255 PANTHER PTHR30096:SF0 1 254 1.5E-97 T 22-04-2016 PP4_RS19730 04f531ee53f69eb627237b3ba6d67709 255 SUPERFAMILY SSF53213 1 255 2.09E-92 T 22-04-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 PP4_RS19730 04f531ee53f69eb627237b3ba6d67709 255 Gene3D G3DSA:3.40.830.10 2 255 4.5E-95 T 22-04-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 PP4_RS19730 04f531ee53f69eb627237b3ba6d67709 255 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 4 254 3.1E-47 T 22-04-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 PP4_RS19730 04f531ee53f69eb627237b3ba6d67709 255 PIRSF PIRSF006157 1 255 1.0E-91 T 22-04-2016 IPR014436 Extradiol aromatic ring-opening dioxygenase, DODA type GO:0008270|GO:0016701|GO:0055114 PP4_RS19730 04f531ee53f69eb627237b3ba6d67709 255 PANTHER PTHR30096 1 254 1.5E-97 T 22-04-2016 PP4_RS12730 586d70adc044e39d9a4fef5fa495178d 473 Pfam PF13727 CoA-binding domain 66 247 8.4E-21 T 22-04-2016 PP4_RS12730 586d70adc044e39d9a4fef5fa495178d 473 PANTHER PTHR30576:SF0 51 473 1.9E-128 T 22-04-2016 PP4_RS12730 586d70adc044e39d9a4fef5fa495178d 473 TIGRFAM TIGR03025 EPS_sugtrans: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase 34 473 5.8E-137 T 22-04-2016 IPR017475 Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase PP4_RS12730 586d70adc044e39d9a4fef5fa495178d 473 TIGRFAM TIGR03023 WcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase 37 473 1.8E-137 T 22-04-2016 IPR017473 Undecaprenyl-phosphate glucose phosphotransferase, WcaJ MetaCyc: PWY-6655|MetaCyc: PWY-6658 PP4_RS12730 586d70adc044e39d9a4fef5fa495178d 473 Pfam PF02397 Bacterial sugar transferase 283 466 3.9E-55 T 22-04-2016 IPR003362 Bacterial sugar transferase PP4_RS12730 586d70adc044e39d9a4fef5fa495178d 473 PANTHER PTHR30576 51 473 1.9E-128 T 22-04-2016 PP4_RS11935 dfeeb452ac40464d2cc521251e4780b0 91 Gene3D G3DSA:1.10.10.10 21 82 8.1E-8 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS11935 dfeeb452ac40464d2cc521251e4780b0 91 Pfam PF05930 Prophage CP4-57 regulatory protein (AlpA) 22 71 9.7E-8 T 22-04-2016 IPR010260 Prophage CP4-57 regulatory protein (AlpA) PP4_RS06460 753bf25b03d8ab5d5465431f3c427503 114 PANTHER PTHR35174 2 114 1.0E-38 T 22-04-2016 PP4_RS06460 753bf25b03d8ab5d5465431f3c427503 114 PANTHER PTHR35174:SF3 2 114 1.0E-38 T 22-04-2016 PP4_RS06460 753bf25b03d8ab5d5465431f3c427503 114 Gene3D G3DSA:3.30.70.1060 1 113 2.5E-36 T 22-04-2016 PP4_RS06460 753bf25b03d8ab5d5465431f3c427503 114 SUPERFAMILY SSF54909 1 112 9.12E-33 T 22-04-2016 IPR011008 Dimeric alpha-beta barrel PP4_RS06460 753bf25b03d8ab5d5465431f3c427503 114 Pfam PF03795 YCII-related domain 1 112 2.2E-25 T 22-04-2016 IPR005545 YCII-related PP4_RS09980 f4fa01f415347c58fe1abe8fb83d0d3f 163 Gene3D G3DSA:3.50.100.10 63 152 5.4E-27 T 22-04-2016 PP4_RS09980 f4fa01f415347c58fe1abe8fb83d0d3f 163 Pfam PF07566 Domain of Unknown Function (DUF1543) 15 65 2.0E-22 T 22-04-2016 IPR011440 Domain of unknown function DUF1543 PP4_RS09980 f4fa01f415347c58fe1abe8fb83d0d3f 163 Gene3D G3DSA:3.10.20.10 2 62 7.1E-26 T 22-04-2016 PP4_RS16220 84f000ee68d230680c56a5323c901268 72 Pfam PF10945 Cellulose biosynthesis protein BcsR 11 51 1.6E-19 T 22-04-2016 IPR024487 Cellulose biosynthesis protein BcsR PP4_RS16220 84f000ee68d230680c56a5323c901268 72 ProDom PD053230 YHJR ECS4415 STY4179 CYTOPLASMIC 13 50 5.0E-4 T 22-04-2016 IPR024487 Cellulose biosynthesis protein BcsR PP4_RS06690 cfdeb7df40e32fc9819eb043bd49ba95 103 PANTHER PTHR34205 7 103 5.7E-51 T 22-04-2016 PP4_RS06690 cfdeb7df40e32fc9819eb043bd49ba95 103 PANTHER PTHR34205:SF1 7 103 5.7E-51 T 22-04-2016 PP4_RS06690 cfdeb7df40e32fc9819eb043bd49ba95 103 Pfam PF06127 Protein of unknown function (DUF962) 7 101 3.2E-37 T 22-04-2016 IPR009305 Protein of unknown function DUF962 PP4_RS23275 bdcf7b4229107d7f93c3aa74682ac51b 402 PANTHER PTHR30012 7 402 1.4E-127 T 22-04-2016 PP4_RS23275 bdcf7b4229107d7f93c3aa74682ac51b 402 PANTHER PTHR30012:SF0 7 402 1.4E-127 T 22-04-2016 PP4_RS23275 bdcf7b4229107d7f93c3aa74682ac51b 402 Pfam PF00482 Type II secretion system (T2SS), protein F 272 394 8.6E-29 T 22-04-2016 IPR018076 Type II secretion system F domain PP4_RS23275 bdcf7b4229107d7f93c3aa74682ac51b 402 Pfam PF00482 Type II secretion system (T2SS), protein F 68 191 4.6E-29 T 22-04-2016 IPR018076 Type II secretion system F domain PP4_RS23275 bdcf7b4229107d7f93c3aa74682ac51b 402 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 163 191 - T 22-04-2016 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 PP4_RS23275 bdcf7b4229107d7f93c3aa74682ac51b 402 PRINTS PR00812 Bacterial general secretion pathway protein F signature 64 76 6.9E-19 T 22-04-2016 IPR003004 GspF/PilC family PP4_RS23275 bdcf7b4229107d7f93c3aa74682ac51b 402 PRINTS PR00812 Bacterial general secretion pathway protein F signature 367 381 6.9E-19 T 22-04-2016 IPR003004 GspF/PilC family PP4_RS23275 bdcf7b4229107d7f93c3aa74682ac51b 402 PRINTS PR00812 Bacterial general secretion pathway protein F signature 163 191 6.9E-19 T 22-04-2016 IPR003004 GspF/PilC family PP4_RS23275 bdcf7b4229107d7f93c3aa74682ac51b 402 PRINTS PR00812 Bacterial general secretion pathway protein F signature 383 402 6.9E-19 T 22-04-2016 IPR003004 GspF/PilC family PP4_RS13690 d4d790a833f3047454b7f49d24ebfc8f 139 Gene3D G3DSA:3.10.129.10 4 131 1.7E-16 T 22-04-2016 IPR029069 HotDog domain PP4_RS13690 d4d790a833f3047454b7f49d24ebfc8f 139 SUPERFAMILY SSF54637 4 137 1.03E-19 T 22-04-2016 IPR029069 HotDog domain PP4_RS13690 d4d790a833f3047454b7f49d24ebfc8f 139 Pfam PF01575 MaoC like domain 19 119 4.0E-6 T 22-04-2016 IPR002539 MaoC-like domain PP4_RS18830 2c100c908b8d7fd014313dcc0ea9ba9e 104 PANTHER PTHR35893 1 104 2.8E-33 T 22-04-2016 PP4_RS18830 2c100c908b8d7fd014313dcc0ea9ba9e 104 PANTHER PTHR35893:SF3 1 104 2.8E-33 T 22-04-2016 PP4_RS18830 2c100c908b8d7fd014313dcc0ea9ba9e 104 Pfam PF05957 Bacterial protein of unknown function (DUF883) 13 104 1.0E-32 T 22-04-2016 IPR010279 Protein of unknown function DUF883, ElaB PP4_RS16025 471c060b57eca56fcc336c531ea824da 141 Gene3D G3DSA:1.20.120.550 4 135 6.8E-37 T 22-04-2016 IPR023352 Membrane associated eicosanoid/glutathione metabolism-like domain PP4_RS16025 471c060b57eca56fcc336c531ea824da 141 PANTHER PTHR10689 2 129 1.4E-35 T 22-04-2016 PP4_RS16025 471c060b57eca56fcc336c531ea824da 141 PANTHER PTHR10689:SF6 2 129 1.4E-35 T 22-04-2016 PP4_RS16025 471c060b57eca56fcc336c531ea824da 141 Pfam PF01124 MAPEG family 9 134 8.4E-20 T 22-04-2016 IPR001129 Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein PP4_RS16025 471c060b57eca56fcc336c531ea824da 141 SUPERFAMILY SSF161084 4 131 1.44E-29 T 22-04-2016 PP4_RS22465 9136fe52076283f39c37ca4156949069 127 Pfam PF03692 Putative zinc- or iron-chelating domain 6 97 1.3E-10 T 22-04-2016 IPR005358 Putative zinc- or iron-chelating domain containing protein PP4_RS17900 a7214ec791cd727ca9184fc0a1d44de7 336 Pfam PF03601 Conserved hypothetical protein 698 18 316 4.3E-72 T 22-04-2016 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 PP4_RS17900 a7214ec791cd727ca9184fc0a1d44de7 336 PANTHER PTHR30106 3 334 3.4E-59 T 22-04-2016 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 PP4_RS14045 6ad843d50506e367796b1bcb60bb9547 743 PANTHER PTHR15498:SF49 40 283 1.1E-21 T 22-04-2016 PP4_RS14045 6ad843d50506e367796b1bcb60bb9547 743 PANTHER PTHR15498 40 283 1.1E-21 T 22-04-2016 PP4_RS04780 419fba1e0e8446c2fa9930b97ff21ee4 291 SUPERFAMILY SSF56281 25 250 2.8E-44 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS04780 419fba1e0e8446c2fa9930b97ff21ee4 291 Pfam PF00753 Metallo-beta-lactamase superfamily 40 226 4.2E-14 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS04780 419fba1e0e8446c2fa9930b97ff21ee4 291 PANTHER PTHR11935:SF5 21 291 5.1E-86 T 22-04-2016 PP4_RS04780 419fba1e0e8446c2fa9930b97ff21ee4 291 Gene3D G3DSA:3.60.15.10 31 254 1.6E-36 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS04780 419fba1e0e8446c2fa9930b97ff21ee4 291 PANTHER PTHR11935 21 291 5.1E-86 T 22-04-2016 PP4_RS04780 419fba1e0e8446c2fa9930b97ff21ee4 291 SMART SM00849 41 226 9.5E-22 T 22-04-2016 IPR001279 Metallo-beta-lactamase PP4_RS21020 b1c9b4d17f561a7b62563383ef72cff3 271 Pfam PF01148 Cytidylyltransferase family 3 264 1.0E-61 T 22-04-2016 PP4_RS21020 b1c9b4d17f561a7b62563383ef72cff3 271 PANTHER PTHR13773:SF0 1 263 9.2E-64 T 22-04-2016 PP4_RS21020 b1c9b4d17f561a7b62563383ef72cff3 271 PANTHER PTHR13773 1 263 9.2E-64 T 22-04-2016 PP4_RS21020 b1c9b4d17f561a7b62563383ef72cff3 271 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 224 250 - T 22-04-2016 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|UniPathway: UPA00557 PP4_RS03880 97cc8f0824e8897b9d0d9a90af7ac06d 316 Pfam PF08666 SAF domain 62 118 4.1E-8 T 22-04-2016 IPR013974 SAF domain PP4_RS03880 97cc8f0824e8897b9d0d9a90af7ac06d 316 TIGRFAM TIGR03177 pilus_cpaB: Flp pilus assembly protein CpaB 12 310 9.0E-60 T 22-04-2016 IPR017592 Pilus assembly, Flp-type CpaB PP4_RS03880 97cc8f0824e8897b9d0d9a90af7ac06d 316 Pfam PF16976 Flp pilus assembly protein RcpC/CpaB 125 248 6.2E-29 T 22-04-2016 IPR031571 Flp pilus assembly protein RcpC/CpaB domain PP4_RS03880 97cc8f0824e8897b9d0d9a90af7ac06d 316 SMART SM00858 61 121 6.8E-10 T 22-04-2016 IPR013974 SAF domain PP4_RS17685 980b9e17ba7cb7d20474ae8353ddf681 98 Pfam PF13744 Helix-turn-helix domain 24 91 3.4E-12 T 22-04-2016 PP4_RS17685 980b9e17ba7cb7d20474ae8353ddf681 98 Gene3D G3DSA:1.10.260.40 27 91 1.6E-6 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS17685 980b9e17ba7cb7d20474ae8353ddf681 98 SUPERFAMILY SSF47413 24 94 7.07E-11 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS17130 402200208c8e76470bd205445ebb8970 91 Pfam PF10976 Protein of unknown function (DUF2790) 13 88 2.8E-23 T 22-04-2016 IPR021245 Protein of unknown function DUF2790 PP4_RS22335 8376c3fff14730cca01a821610cde06f 251 Gene3D G3DSA:3.40.1280.10 3 160 3.0E-34 T 22-04-2016 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal PP4_RS22335 8376c3fff14730cca01a821610cde06f 251 PIRSF PIRSF004808 1 247 3.8E-74 T 22-04-2016 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 PP4_RS22335 8376c3fff14730cca01a821610cde06f 251 Pfam PF00588 SpoU rRNA Methylase family 5 155 1.4E-34 T 22-04-2016 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 PP4_RS22335 8376c3fff14730cca01a821610cde06f 251 PANTHER PTHR12029 3 182 1.2E-40 T 22-04-2016 PP4_RS22335 8376c3fff14730cca01a821610cde06f 251 TIGRFAM TIGR00050 rRNA_methyl_1: RNA methyltransferase, TrmH family, group 1 1 240 9.6E-79 T 22-04-2016 IPR004384 RNA methyltransferase TrmH, group 1 GO:0006396|GO:0008173 KEGG: 00260+2.1.1.20|MetaCyc: PWY-6004 PP4_RS22335 8376c3fff14730cca01a821610cde06f 251 SUPERFAMILY SSF75217 4 167 1.57E-38 T 22-04-2016 IPR029028 Alpha/beta knot methyltransferases PP4_RS23080 6c508376e49119577f8ee6eade1b98a4 153 PANTHER PTHR37952:SF2 7 151 5.3E-76 T 22-04-2016 PP4_RS23080 6c508376e49119577f8ee6eade1b98a4 153 PIRSF PIRSF003174 1 153 1.7E-69 T 22-04-2016 IPR010292 Uncharacterised protein family CreA PP4_RS23080 6c508376e49119577f8ee6eade1b98a4 153 PANTHER PTHR37952 7 151 5.3E-76 T 22-04-2016 PP4_RS23080 6c508376e49119577f8ee6eade1b98a4 153 Pfam PF05981 CreA protein 24 151 1.0E-58 T 22-04-2016 IPR010292 Uncharacterised protein family CreA PP4_RS17800 1054d3833de35c68fc682db83813e61d 125 Gene3D G3DSA:3.30.1330.40 13 123 5.5E-37 T 22-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like PP4_RS17800 1054d3833de35c68fc682db83813e61d 125 SUPERFAMILY SSF55298 13 124 4.87E-36 T 22-04-2016 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like PP4_RS17800 1054d3833de35c68fc682db83813e61d 125 Pfam PF01042 Endoribonuclease L-PSP 15 121 2.9E-29 T 22-04-2016 IPR006175 YjgF/YER057c/UK114 family PP4_RS17800 1054d3833de35c68fc682db83813e61d 125 PANTHER PTHR11803 15 125 9.7E-41 T 22-04-2016 IPR006175 YjgF/YER057c/UK114 family PP4_RS09260 8a7a490cb203e5f36c82ba44d1636b65 141 Pfam PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system 4 67 8.7E-8 T 22-04-2016 IPR031807 HicB-like antitoxin of toxin-antitoxin system PP4_RS09260 8a7a490cb203e5f36c82ba44d1636b65 141 SUPERFAMILY SSF143100 2 62 1.31E-12 T 22-04-2016 PP4_RS10990 91cf40e3ae7de2b618332403578cfe90 301 Pfam PF13522 Glutamine amidotransferase domain 142 270 1.2E-19 T 22-04-2016 PP4_RS10990 91cf40e3ae7de2b618332403578cfe90 301 SUPERFAMILY SSF56235 117 299 6.39E-46 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PP4_RS10990 91cf40e3ae7de2b618332403578cfe90 301 SUPERFAMILY SSF56235 2 44 6.39E-46 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PP4_RS10990 91cf40e3ae7de2b618332403578cfe90 301 PANTHER PTHR11907 113 274 1.9E-32 T 22-04-2016 PP4_RS10990 91cf40e3ae7de2b618332403578cfe90 301 PANTHER PTHR11907 1 55 1.9E-32 T 22-04-2016 PP4_RS10990 91cf40e3ae7de2b618332403578cfe90 301 Gene3D G3DSA:3.60.20.10 2 44 1.1E-56 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PP4_RS10990 91cf40e3ae7de2b618332403578cfe90 301 Gene3D G3DSA:3.60.20.10 116 299 1.1E-56 T 22-04-2016 IPR029055 Nucleophile aminohydrolases, N-terminal PP4_RS10990 91cf40e3ae7de2b618332403578cfe90 301 PANTHER PTHR11907:SF0 113 274 1.9E-32 T 22-04-2016 PP4_RS10990 91cf40e3ae7de2b618332403578cfe90 301 PANTHER PTHR11907:SF0 1 55 1.9E-32 T 22-04-2016 PP4_RS07150 65e01f233423638fbeeeb9421e199114 447 Pfam PF04230 Polysaccharide pyruvyl transferase 92 313 3.3E-19 T 22-04-2016 IPR007345 Polysaccharide pyruvyl transferase PP4_RS07395 f7abe78a8d7876ac2bca18a0722df393 158 Pfam PF03918 Cytochrome C biogenesis protein 9 151 5.3E-55 T 22-04-2016 IPR005616 CcmH/CycL/Ccl2/NrfF family PP4_RS07395 f7abe78a8d7876ac2bca18a0722df393 158 PANTHER PTHR30009:SF6 9 129 1.6E-41 T 22-04-2016 PP4_RS07395 f7abe78a8d7876ac2bca18a0722df393 158 PANTHER PTHR30009 9 129 1.6E-41 T 22-04-2016 PP4_RS08800 1fa451629dc7d44b8f32bf3c4a082a43 259 PANTHER PTHR30269:SF25 7 259 1.4E-144 T 22-04-2016 PP4_RS08800 1fa451629dc7d44b8f32bf3c4a082a43 259 Pfam PF01925 Sulfite exporter TauE/SafE 15 250 4.3E-43 T 22-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 PP4_RS08800 1fa451629dc7d44b8f32bf3c4a082a43 259 PANTHER PTHR30269 7 259 1.4E-144 T 22-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 PP4_RS05665 393c462a4d56f47f205630991fa2a94b 307 Pfam PF00892 EamA-like transporter family 167 302 1.1E-9 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS05665 393c462a4d56f47f205630991fa2a94b 307 Pfam PF00892 EamA-like transporter family 16 147 6.1E-8 T 22-04-2016 IPR000620 EamA domain GO:0016020|GO:0016021 PP4_RS05665 393c462a4d56f47f205630991fa2a94b 307 PANTHER PTHR22911 10 306 4.0E-29 T 22-04-2016 PP4_RS05665 393c462a4d56f47f205630991fa2a94b 307 SUPERFAMILY SSF103481 53 147 1.83E-9 T 22-04-2016 PP4_RS05665 393c462a4d56f47f205630991fa2a94b 307 SUPERFAMILY SSF103481 227 305 4.18E-10 T 22-04-2016 PP4_RS25375 bf3ff771c1197e5e9d9dde72c1c9ebbc 130 Pfam PF06476 Protein of unknown function (DUF1090) 19 123 6.9E-34 T 22-04-2016 IPR009468 Protein of unknown function DUF1090 PP4_RS02990 1dfb862b98b2909bd6208dba5020b78e 222 Pfam PF11769 Protein of unknown function (DUF3313) 16 213 8.2E-59 T 22-04-2016 IPR021747 Protein of unknown function DUF3313 PP4_RS13330 ab9437fa3cf84ab6af9f40e3d0d1d6b7 332 PIRSF PIRSF033905 1 332 8.5E-158 T 22-04-2016 IPR009645 Uncharacterised conserved protein GguC PP4_RS13330 ab9437fa3cf84ab6af9f40e3d0d1d6b7 332 Gene3D G3DSA:3.90.850.10 135 311 4.8E-4 T 22-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 PP4_RS13330 ab9437fa3cf84ab6af9f40e3d0d1d6b7 332 SUPERFAMILY SSF56529 113 317 9.71E-23 T 22-04-2016 IPR011234 Fumarylacetoacetase, C-terminal-related GO:0003824|GO:0008152 PP4_RS26450 5c1a1ff78546e587d608ade6f0840216 297 PANTHER PTHR30222 10 277 1.1E-83 T 22-04-2016 PP4_RS26450 5c1a1ff78546e587d608ade6f0840216 297 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 75 262 6.1E-16 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS26450 5c1a1ff78546e587d608ade6f0840216 297 Gene3D G3DSA:1.10.3720.10 2 267 3.5E-57 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS26450 5c1a1ff78546e587d608ade6f0840216 297 SUPERFAMILY SSF161098 5 263 2.75E-51 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS26450 5c1a1ff78546e587d608ade6f0840216 297 PANTHER PTHR30222:SF1 10 277 1.1E-83 T 22-04-2016 PP4_RS14355 3dc25642e5a003d7ccab3144fb015db6 268 Pfam PF12792 CSS motif domain associated with EAL 42 230 2.0E-28 T 22-04-2016 IPR024744 Putative cyclic diguanylate phosphodiesterase, CSS motif-containing domain PP4_RS22390 444dd9fdeda2304e042164647b00c229 140 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 11 49 9.1E-5 T 22-04-2016 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain PP4_RS22390 444dd9fdeda2304e042164647b00c229 140 SUPERFAMILY SSF54593 5 133 1.51E-20 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PP4_RS22390 444dd9fdeda2304e042164647b00c229 140 Gene3D G3DSA:3.10.180.10 3 137 6.0E-44 T 22-04-2016 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase PP4_RS03045 02dcfbdc9fe148684ca04a36b6a4ebd6 521 Gene3D G3DSA:3.40.720.10 27 387 3.0E-96 T 22-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 PP4_RS03045 02dcfbdc9fe148684ca04a36b6a4ebd6 521 Gene3D G3DSA:3.30.1120.10 388 467 1.2E-10 T 22-04-2016 PP4_RS03045 02dcfbdc9fe148684ca04a36b6a4ebd6 521 PANTHER PTHR10342:SF241 3 505 1.7E-150 T 22-04-2016 PP4_RS03045 02dcfbdc9fe148684ca04a36b6a4ebd6 521 SUPERFAMILY SSF53649 26 471 5.35E-122 T 22-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 PP4_RS03045 02dcfbdc9fe148684ca04a36b6a4ebd6 521 PANTHER PTHR10342 3 505 1.7E-150 T 22-04-2016 PP4_RS03045 02dcfbdc9fe148684ca04a36b6a4ebd6 521 Pfam PF00884 Sulfatase 30 358 2.3E-61 T 22-04-2016 IPR000917 Sulfatase, N-terminal GO:0008152|GO:0008484 PP4_RS03825 1cce8733d45cb480a8efe474340dca4a 637 Pfam PF13400 Putative Flp pilus-assembly TadE/G-like 3 42 5.5E-7 T 22-04-2016 IPR028087 Putative Flp pilus-assembly TadG-like, N-terminal PP4_RS05155 f5a577b90874f78b5ea56cac9f34c528 305 PANTHER PTHR30085:SF2 1 302 5.1E-123 T 22-04-2016 PP4_RS05155 f5a577b90874f78b5ea56cac9f34c528 305 Gene3D G3DSA:3.40.190.10 233 274 1.5E-25 T 22-04-2016 PP4_RS05155 f5a577b90874f78b5ea56cac9f34c528 305 Gene3D G3DSA:3.40.190.10 34 122 1.5E-25 T 22-04-2016 PP4_RS05155 f5a577b90874f78b5ea56cac9f34c528 305 PANTHER PTHR30085 1 302 5.1E-123 T 22-04-2016 PP4_RS05155 f5a577b90874f78b5ea56cac9f34c528 305 SUPERFAMILY SSF53850 6 273 2.74E-59 T 22-04-2016 PP4_RS05155 f5a577b90874f78b5ea56cac9f34c528 305 Gene3D G3DSA:3.40.190.10 123 232 1.1E-27 T 22-04-2016 PP4_RS05155 f5a577b90874f78b5ea56cac9f34c528 305 SMART SM00062 38 272 1.3E-50 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS05155 f5a577b90874f78b5ea56cac9f34c528 305 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 39 270 9.8E-47 T 22-04-2016 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF PP4_RS14750 1d7cd25389cf2e36618b87f33488f34b 580 PANTHER PTHR12815:SF12 11 580 4.0E-198 T 22-04-2016 PP4_RS14750 1d7cd25389cf2e36618b87f33488f34b 580 Gene3D G3DSA:2.40.160.50 442 577 2.1E-20 T 22-04-2016 PP4_RS14750 1d7cd25389cf2e36618b87f33488f34b 580 Pfam PF07244 Surface antigen variable number repeat 192 249 5.6E-6 T 22-04-2016 IPR010827 Surface antigen variable number GO:0019867 PP4_RS14750 1d7cd25389cf2e36618b87f33488f34b 580 PANTHER PTHR12815 11 580 4.0E-198 T 22-04-2016 PP4_RS14750 1d7cd25389cf2e36618b87f33488f34b 580 Pfam PF01103 Surface antigen 294 577 1.4E-35 T 22-04-2016 IPR000184 Bacterial surface antigen (D15) GO:0019867 PP4_RS03120 27502d2c1f2d9400af6e321fd8d23c3f 233 Gene3D G3DSA:1.10.260.40 1 65 2.3E-7 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS03120 27502d2c1f2d9400af6e321fd8d23c3f 233 SUPERFAMILY SSF47413 3 64 4.07E-5 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS03120 27502d2c1f2d9400af6e321fd8d23c3f 233 SUPERFAMILY SSF51306 126 225 1.1E-6 T 22-04-2016 IPR015927 Peptidase S24/S26A/S26B/S26C PP4_RS12330 cc356968ee4b7045713117d136a8a6eb 291 PANTHER PTHR36838 1 291 7.7E-101 T 22-04-2016 PP4_RS12330 cc356968ee4b7045713117d136a8a6eb 291 PANTHER PTHR36838:SF2 1 291 7.7E-101 T 22-04-2016 PP4_RS12330 cc356968ee4b7045713117d136a8a6eb 291 Pfam PF03547 Membrane transport protein 147 285 1.9E-9 T 22-04-2016 IPR004776 Auxin efflux carrier GO:0016021|GO:0055085 PP4_RS24630 06779eadc328da6da31e67e11a6b52f9 452 Pfam PF13719 zinc-ribbon domain 6 41 1.5E-10 T 22-04-2016 IPR011723 Zinc finger/thioredoxin putative PP4_RS24630 06779eadc328da6da31e67e11a6b52f9 452 Pfam PF11906 Protein of unknown function (DUF3426) 304 448 9.2E-37 T 22-04-2016 IPR021834 Protein of unknown function DUF3426 PP4_RS24630 06779eadc328da6da31e67e11a6b52f9 452 TIGRFAM TIGR02098 MJ0042_CXXC: MJ0042 family finger-like domain 6 41 5.6E-17 T 22-04-2016 IPR011723 Zinc finger/thioredoxin putative PP4_RS24365 7998663d02c6117c5d96c1bcf3601906 422 Gene3D G3DSA:3.40.50.620 138 352 2.2E-7 T 22-04-2016 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold PP4_RS24365 7998663d02c6117c5d96c1bcf3601906 422 Pfam PF06508 Queuosine biosynthesis protein QueC 261 340 3.3E-5 T 22-04-2016 IPR018317 Queuosine biosynthesis protein QueC KEGG: 00790+6.3.4.20|MetaCyc: PWY-6703|UniPathway: UPA00391 PP4_RS24365 7998663d02c6117c5d96c1bcf3601906 422 SUPERFAMILY SSF52402 137 341 2.1E-10 T 22-04-2016 PP4_RS08280 cd3508c39d3af10a5bf88e0b9ad32bea 130 Gene3D G3DSA:1.10.260.40 21 57 1.8E-5 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS08280 cd3508c39d3af10a5bf88e0b9ad32bea 130 Pfam PF07022 Bacteriophage CI repressor helix-turn-helix domain 8 72 9.6E-13 T 22-04-2016 IPR010744 Bacteriophage CI repressor GO:0003677|GO:0045892 PP4_RS07250 5b826a463ec34dab5fc2f4ef6695ec04 144 Pfam PF04347 Flagellar biosynthesis protein, FliO 56 136 5.6E-19 T 22-04-2016 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 PP4_RS07250 5b826a463ec34dab5fc2f4ef6695ec04 144 TIGRFAM TIGR03500 FliO_TIGR: flagellar biosynthetic protein FliO 44 111 1.3E-19 T 22-04-2016 IPR022781 Flagellar biosynthesis protein, FliO GO:0016021|GO:0044781 PP4_RS07250 5b826a463ec34dab5fc2f4ef6695ec04 144 PANTHER PTHR38766:SF1 1 144 2.1E-25 T 22-04-2016 PP4_RS07250 5b826a463ec34dab5fc2f4ef6695ec04 144 PANTHER PTHR38766 1 144 2.1E-25 T 22-04-2016 PP4_RS12010 79d238e0127c45f46480c94cf390a88a 1949 Gene3D G3DSA:2.60.40.420 478 554 4.7E-12 T 22-04-2016 IPR008972 Cupredoxin PP4_RS12010 79d238e0127c45f46480c94cf390a88a 1949 Gene3D G3DSA:2.60.40.420 95 115 4.7E-12 T 22-04-2016 IPR008972 Cupredoxin PP4_RS12010 79d238e0127c45f46480c94cf390a88a 1949 Gene3D G3DSA:2.60.40.420 1289 1347 4.8E-7 T 22-04-2016 IPR008972 Cupredoxin PP4_RS12010 79d238e0127c45f46480c94cf390a88a 1949 Gene3D G3DSA:2.60.40.420 1097 1164 4.8E-7 T 22-04-2016 IPR008972 Cupredoxin PP4_RS12010 79d238e0127c45f46480c94cf390a88a 1949 ProSitePatterns PS00080 Multicopper oxidases signature 2. 535 546 - T 22-04-2016 IPR002355 Multicopper oxidase, copper-binding site GO:0005507 PP4_RS12010 79d238e0127c45f46480c94cf390a88a 1949 SUPERFAMILY SSF49503 1285 1350 6.7E-5 T 22-04-2016 IPR008972 Cupredoxin PP4_RS12010 79d238e0127c45f46480c94cf390a88a 1949 SUPERFAMILY SSF49503 460 554 1.58E-13 T 22-04-2016 IPR008972 Cupredoxin PP4_RS15255 1e0d674704a89276009ce03853e30650 179 SUPERFAMILY SSF52317 7 179 1.72E-46 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS15255 1e0d674704a89276009ce03853e30650 179 TIGRFAM TIGR01382 PfpI: intracellular protease, PfpI family 10 177 3.1E-48 T 22-04-2016 IPR006286 Peptidase C56, PfpI GO:0016798 PP4_RS15255 1e0d674704a89276009ce03853e30650 179 Pfam PF01965 DJ-1/PfpI family 8 175 2.4E-48 T 22-04-2016 IPR002818 DJ-1/PfpI PP4_RS15255 1e0d674704a89276009ce03853e30650 179 PANTHER PTHR11019 5 174 2.0E-63 T 22-04-2016 PP4_RS15255 1e0d674704a89276009ce03853e30650 179 Gene3D G3DSA:3.40.50.880 5 179 3.1E-56 T 22-04-2016 IPR029062 Class I glutamine amidotransferase-like PP4_RS15255 1e0d674704a89276009ce03853e30650 179 PANTHER PTHR11019:SF115 5 174 2.0E-63 T 22-04-2016 PP4_RS25105 642f692103430dd530b69d9c9554a475 328 Pfam PF13449 Esterase-like activity of phytase 39 186 4.0E-10 T 22-04-2016 IPR027372 Phytase-like domain PP4_RS25105 642f692103430dd530b69d9c9554a475 328 SUPERFAMILY SSF63825 49 320 9.15E-10 T 22-04-2016 PP4_RS09640 23e49649898e6a2077cce6c42fc64c2b 307 SUPERFAMILY SSF53213 12 280 4.45E-46 T 22-04-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 PP4_RS09640 23e49649898e6a2077cce6c42fc64c2b 307 Gene3D G3DSA:3.40.830.10 5 268 1.8E-22 T 22-04-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 PP4_RS09640 23e49649898e6a2077cce6c42fc64c2b 307 TIGRFAM TIGR02298 HpaD_Fe: 3,4-dihydroxyphenylacetate 2,3-dioxygenase 1 282 3.1E-136 T 22-04-2016 IPR011984 3,4-dihydroxyphenylacetate 2,3-dioxygenase HpaD-Fe KEGG: 00350+1.13.11.15|UniPathway: UPA00208 PP4_RS09640 23e49649898e6a2077cce6c42fc64c2b 307 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 7 280 1.4E-80 T 22-04-2016 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 PP4_RS06570 9508b0f04b0fe3e7c634408113ce5e5f 433 Pfam PF00924 Mechanosensitive ion channel 150 400 2.3E-41 T 22-04-2016 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 PP4_RS06570 9508b0f04b0fe3e7c634408113ce5e5f 433 PANTHER PTHR30414 1 419 4.4E-189 T 22-04-2016 PP4_RS06570 9508b0f04b0fe3e7c634408113ce5e5f 433 SUPERFAMILY SSF50182 188 255 5.89E-11 T 22-04-2016 IPR010920 LSM domain PP4_RS06570 9508b0f04b0fe3e7c634408113ce5e5f 433 Gene3D G3DSA:2.30.30.60 206 255 2.7E-8 T 22-04-2016 PP4_RS06570 9508b0f04b0fe3e7c634408113ce5e5f 433 PANTHER PTHR30414:SF0 1 419 4.4E-189 T 22-04-2016 IPR030192 Miniconductance mechanosensitive channel YbdG GO:0008381|GO:0016021|GO:0071470 PP4_RS01685 35100ee4a3fc3f31f9cf0ec2bca7feb3 294 PANTHER PTHR37418:SF2 2 88 1.7E-146 T 22-04-2016 PP4_RS01685 35100ee4a3fc3f31f9cf0ec2bca7feb3 294 PANTHER PTHR37418:SF2 107 294 1.7E-146 T 22-04-2016 PP4_RS01685 35100ee4a3fc3f31f9cf0ec2bca7feb3 294 Pfam PF05853 beta-keto acid cleavage enzyme 5 291 7.4E-97 T 22-04-2016 IPR008567 3-keto-5-aminohexanoate cleavage enzyme GO:0016740|GO:0019475 KEGG: 00600+2.3.1.24|UniPathway: UPA00870 PP4_RS01685 35100ee4a3fc3f31f9cf0ec2bca7feb3 294 PANTHER PTHR37418 2 88 1.7E-146 T 22-04-2016 PP4_RS01685 35100ee4a3fc3f31f9cf0ec2bca7feb3 294 PANTHER PTHR37418 107 294 1.7E-146 T 22-04-2016 PP4_RS01685 35100ee4a3fc3f31f9cf0ec2bca7feb3 294 Gene3D G3DSA:3.20.20.70 3 293 1.3E-111 T 22-04-2016 IPR013785 Aldolase-type TIM barrel GO:0003824 PP4_RS14245 76cd93860b8db64b1428c983fb6a1c73 450 Pfam PF02447 GntP family permease 10 447 1.4E-180 T 22-04-2016 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 PP4_RS14245 76cd93860b8db64b1428c983fb6a1c73 450 PANTHER PTHR30354 5 450 4.4E-233 T 22-04-2016 PP4_RS14245 76cd93860b8db64b1428c983fb6a1c73 450 TIGRFAM TIGR00791 gntP: transporter, gluconate:H+ symporter (GntP) family 15 450 2.0E-162 T 22-04-2016 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 PP4_RS14245 76cd93860b8db64b1428c983fb6a1c73 450 PIRSF PIRSF002746 5 450 2.4E-163 T 22-04-2016 IPR003474 Gluconate transporter GO:0015128|GO:0016020|GO:0035429 PP4_RS14245 76cd93860b8db64b1428c983fb6a1c73 450 PANTHER PTHR30354:SF1 5 450 4.4E-233 T 22-04-2016 PP4_RS08185 60e05eba591cf8f44d08d0cf43bc0c61 155 TIGRFAM TIGR01764 excise: DNA binding domain, excisionase family 84 130 1.2E-15 T 22-04-2016 IPR010093 SinI-like, DNA-binding domain GO:0003677 PP4_RS08185 60e05eba591cf8f44d08d0cf43bc0c61 155 Pfam PF12728 Helix-turn-helix domain 84 132 5.6E-12 T 22-04-2016 PP4_RS08185 60e05eba591cf8f44d08d0cf43bc0c61 155 SUPERFAMILY SSF46955 84 133 6.96E-5 T 22-04-2016 IPR009061 Putative DNA-binding domain PP4_RS17080 94e3aab9393c1bc65e3ece656de3fff4 136 Pfam PF11162 Protein of unknown function (DUF2946) 12 125 1.4E-6 T 22-04-2016 IPR021333 Protein of unknown function DUF2946 PP4_RS03575 7175e62c31debf6053a0917cc5bed08f 299 Pfam PF04228 Putative neutral zinc metallopeptidase 1 294 8.1E-125 T 22-04-2016 IPR007343 Uncharacterised protein family, zinc metallopeptidase putative PP4_RS03575 7175e62c31debf6053a0917cc5bed08f 299 PANTHER PTHR30168 2 299 2.3E-140 T 22-04-2016 PP4_RS13275 62a8952c477d72f12e6f0dc2ec3cf797 269 PANTHER PTHR33973 2 244 2.5E-49 T 22-04-2016 PP4_RS13275 62a8952c477d72f12e6f0dc2ec3cf797 269 Pfam PF07103 Protein of unknown function (DUF1365) 7 245 9.4E-65 T 22-04-2016 IPR010775 Protein of unknown function DUF1365 PP4_RS12705 7e118a60eeecf2a005e22ac84ee30b9a 325 PANTHER PTHR22916 7 255 2.8E-26 T 22-04-2016 PP4_RS12705 7e118a60eeecf2a005e22ac84ee30b9a 325 Gene3D G3DSA:3.90.550.10 7 211 6.9E-24 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS12705 7e118a60eeecf2a005e22ac84ee30b9a 325 Pfam PF00535 Glycosyl transferase family 2 7 130 1.8E-12 T 22-04-2016 IPR001173 Glycosyltransferase 2-like PP4_RS12705 7e118a60eeecf2a005e22ac84ee30b9a 325 SUPERFAMILY SSF53448 7 213 6.94E-34 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS05490 0a2e3db1d8fe67dbbc7dbbc6238dc6ac 307 PANTHER PTHR11795 3 307 7.3E-140 T 22-04-2016 PP4_RS05490 0a2e3db1d8fe67dbbc7dbbc6238dc6ac 307 PANTHER PTHR11795:SF371 3 307 7.3E-140 T 22-04-2016 PP4_RS05490 0a2e3db1d8fe67dbbc7dbbc6238dc6ac 307 Pfam PF02653 Branched-chain amino acid transport system / permease component 11 291 2.3E-57 T 22-04-2016 IPR001851 ABC transporter, permease GO:0005215|GO:0006810|GO:0016020 PP4_RS03310 fe6b7572415874d06b47cde9f2d8a924 156 Pfam PF01478 Type IV leader peptidase family 4 109 1.6E-8 T 22-04-2016 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 PP4_RS06465 921cd62373fda71f40ffc0aeb792eb95 161 Gene3D G3DSA:3.30.530.20 8 158 6.0E-57 T 22-04-2016 IPR023393 START-like domain PP4_RS06465 921cd62373fda71f40ffc0aeb792eb95 161 SUPERFAMILY SSF55961 11 157 2.24E-48 T 22-04-2016 PP4_RS06465 921cd62373fda71f40ffc0aeb792eb95 161 PANTHER PTHR36929:SF1 6 161 3.8E-32 T 22-04-2016 PP4_RS06465 921cd62373fda71f40ffc0aeb792eb95 161 Pfam PF08327 Activator of Hsp90 ATPase homolog 1-like protein 20 155 5.5E-35 T 22-04-2016 IPR013538 Activator of Hsp90 ATPase homologue 1-like GO:0006950 PP4_RS06465 921cd62373fda71f40ffc0aeb792eb95 161 PANTHER PTHR36929 6 161 3.8E-32 T 22-04-2016 PP4_RS19085 e839434a8694b766b964cec53fd7890c 98 Pfam PF11342 Protein of unknown function (DUF3144) 9 86 4.0E-30 T 22-04-2016 IPR021490 Protein of unknown function DUF3144 PP4_RS05845 002e48f421cc7ebe12815dc95cf6956a 426 Pfam PF03573 outer membrane porin, OprD family 30 425 1.7E-146 T 22-04-2016 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 PP4_RS05845 002e48f421cc7ebe12815dc95cf6956a 426 PANTHER PTHR34596 1 426 1.7E-151 T 22-04-2016 PP4_RS05845 002e48f421cc7ebe12815dc95cf6956a 426 Gene3D G3DSA:2.40.160.10 35 426 9.5E-149 T 22-04-2016 IPR023614 Porin domain PP4_RS00140 3283b077741c12cd428ed5972e0b986a 435 Pfam PF07396 Phosphate-selective porin O and P 55 435 2.3E-109 T 22-04-2016 IPR010870 Phosphate-selective porin O/P PP4_RS00140 3283b077741c12cd428ed5972e0b986a 435 SUPERFAMILY SSF56935 51 247 4.88E-25 T 22-04-2016 PP4_RS00140 3283b077741c12cd428ed5972e0b986a 435 SUPERFAMILY SSF56935 281 435 4.88E-25 T 22-04-2016 PP4_RS00140 3283b077741c12cd428ed5972e0b986a 435 Gene3D G3DSA:2.40.160.10 29 435 1.9E-124 T 22-04-2016 IPR023614 Porin domain PP4_RS07480 72be2aecd551c113444a0a97934f19b5 290 Pfam PF03253 Urea transporter 16 273 1.1E-50 T 22-04-2016 IPR004937 Urea transporter GO:0015204|GO:0016021|GO:0071918 Reactome: REACT_15518|Reactome: REACT_20679 PP4_RS07480 72be2aecd551c113444a0a97934f19b5 290 Gene3D G3DSA:1.10.3430.10 4 279 1.0E-63 T 22-04-2016 IPR029020 Ammonium/urea transporter PP4_RS07480 72be2aecd551c113444a0a97934f19b5 290 PIRSF PIRSF016502 1 289 5.6E-68 T 22-04-2016 IPR004937 Urea transporter GO:0015204|GO:0016021|GO:0071918 Reactome: REACT_15518|Reactome: REACT_20679 PP4_RS07480 72be2aecd551c113444a0a97934f19b5 290 PANTHER PTHR10464 16 271 1.9E-36 T 22-04-2016 IPR004937 Urea transporter GO:0015204|GO:0016021|GO:0071918 Reactome: REACT_15518|Reactome: REACT_20679 PP4_RS00900 cf5327e0b024e0ffffe3403a7fd652b5 70 Pfam PF07869 Protein of unknown function (DUF1656) 4 59 9.7E-21 T 22-04-2016 IPR012451 Protein of unknown function DUF1656 PP4_RS27280 4f51d136b393ec2e4b45892c5e3b5e38 586 Pfam PF00999 Sodium/hydrogen exchanger family 12 376 3.8E-64 T 22-04-2016 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 PP4_RS27280 4f51d136b393ec2e4b45892c5e3b5e38 586 PANTHER PTHR16254 557 575 1.7E-108 T 22-04-2016 PP4_RS27280 4f51d136b393ec2e4b45892c5e3b5e38 586 PANTHER PTHR16254 6 389 1.7E-108 T 22-04-2016 PP4_RS07330 88b7921447a8e7fe05f83eb528d5a765 297 Pfam PF01584 CheW-like domain 150 281 1.2E-14 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS07330 88b7921447a8e7fe05f83eb528d5a765 297 SMART SM00260 146 281 1.3E-17 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS07330 88b7921447a8e7fe05f83eb528d5a765 297 SUPERFAMILY SSF50341 149 282 9.42E-16 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS07330 88b7921447a8e7fe05f83eb528d5a765 297 PIRSF PIRSF020479 1 296 1.5E-117 T 22-04-2016 IPR014506 Uncharacterised conserved protein UCP020479, signal transduction CheW-like PP4_RS03810 d7337168650b4642822ecc0cde0c20ce 87 Pfam PF07130 YebG protein 1 71 1.2E-25 T 22-04-2016 IPR009813 Uncharacterised protein family YebG PP4_RS03810 d7337168650b4642822ecc0cde0c20ce 87 Gene3D G3DSA:1.10.10.710 18 85 1.3E-26 T 22-04-2016 IPR009813 Uncharacterised protein family YebG PP4_RS07765 604db6c7d34773c233681e7ed39747fc 230 PANTHER PTHR13136 43 228 7.6E-63 T 22-04-2016 IPR026555 KAT8 regulatory NSL complex subunit 3/Testis-expressed sequence 30 protein PP4_RS07765 604db6c7d34773c233681e7ed39747fc 230 PANTHER PTHR13136:SF4 43 228 7.6E-63 T 22-04-2016 PP4_RS07765 604db6c7d34773c233681e7ed39747fc 230 SUPERFAMILY SSF53474 22 229 4.19E-25 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS07765 604db6c7d34773c233681e7ed39747fc 230 Gene3D G3DSA:3.40.50.1820 37 229 2.5E-29 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS23130 dc242a01696abed647c603200820a4eb 162 PANTHER PTHR38596 1 162 3.1E-93 T 22-04-2016 PP4_RS23130 dc242a01696abed647c603200820a4eb 162 Pfam PF03350 Uncharacterized protein family, UPF0114 9 125 6.9E-35 T 22-04-2016 IPR005134 Uncharacterised protein family UPF0114 PP4_RS23130 dc242a01696abed647c603200820a4eb 162 Hamap MF_00143 UPF0114 protein YqhA [yqhA]. 1 162 91.096 T 22-04-2016 IPR020765 Uncharacterised protein family UPF0114, gammaproteobacteria GO:0005886 PP4_RS23130 dc242a01696abed647c603200820a4eb 162 PANTHER PTHR38596:SF1 1 162 3.1E-93 T 22-04-2016 PP4_RS23130 dc242a01696abed647c603200820a4eb 162 TIGRFAM TIGR00645 HI0507: TIGR00645 family protein 1 161 1.5E-71 T 22-04-2016 IPR020761 Uncharacterised protein family UPF0114, bacteria PP4_RS06205 ef9fc89e6f8e0926315fb77f45817ee1 112 Pfam PF11127 Protein of unknown function (DUF2892) 11 64 3.1E-6 T 22-04-2016 IPR021309 Protein of unknown function DUF2892 PP4_RS11500 bffb600235bb9f83bf8115db03ed04ee 203 Pfam PF01810 LysE type translocator 16 199 4.3E-32 T 22-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PP4_RS11500 bffb600235bb9f83bf8115db03ed04ee 203 PIRSF PIRSF006324 1 203 1.2E-52 T 22-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PP4_RS11500 bffb600235bb9f83bf8115db03ed04ee 203 PANTHER PTHR30086:SF14 1 203 1.4E-52 T 22-04-2016 PP4_RS11500 bffb600235bb9f83bf8115db03ed04ee 203 PANTHER PTHR30086 1 203 1.4E-52 T 22-04-2016 IPR001123 Lysine-type exporter protein (LYSE/YGGA) GO:0006865|GO:0016020 PP4_RS10570 d16d1847fdb005541e58efc8e6cbcab2 417 Gene3D G3DSA:2.40.160.10 35 417 7.4E-146 T 22-04-2016 IPR023614 Porin domain PP4_RS10570 d16d1847fdb005541e58efc8e6cbcab2 417 Pfam PF03573 outer membrane porin, OprD family 31 416 1.1E-148 T 22-04-2016 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 PP4_RS10570 d16d1847fdb005541e58efc8e6cbcab2 417 PANTHER PTHR34596 1 417 2.9E-166 T 22-04-2016 PP4_RS01670 a634f25b9153ebaa259abfe28e1323c3 526 Pfam PF13582 Metallo-peptidase family M12B Reprolysin-like 233 342 2.1E-6 T 22-04-2016 PP4_RS01670 a634f25b9153ebaa259abfe28e1323c3 526 SUPERFAMILY SSF55486 306 363 3.54E-5 T 22-04-2016 PP4_RS23505 f4709c6ee105eb1e6ef5e7a6bd6eb8ac 266 Gene3D G3DSA:1.25.40.10 166 258 2.0E-12 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS23505 f4709c6ee105eb1e6ef5e7a6bd6eb8ac 266 SUPERFAMILY SSF48452 165 262 1.11E-11 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS23505 f4709c6ee105eb1e6ef5e7a6bd6eb8ac 266 Pfam PF13432 Tetratricopeptide repeat 171 226 2.0E-7 T 22-04-2016 PP4_RS07835 72d54e25b295044f665843df0ea1fff3 190 Gene3D G3DSA:3.90.550.10 3 185 2.5E-26 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS07835 72d54e25b295044f665843df0ea1fff3 190 Pfam PF12804 MobA-like NTP transferase domain 5 162 2.3E-31 T 22-04-2016 IPR025877 MobA-like NTP transferase PP4_RS07835 72d54e25b295044f665843df0ea1fff3 190 PANTHER PTHR19136:SF78 2 184 8.4E-28 T 22-04-2016 PP4_RS07835 72d54e25b295044f665843df0ea1fff3 190 PANTHER PTHR19136 2 184 8.4E-28 T 22-04-2016 PP4_RS07835 72d54e25b295044f665843df0ea1fff3 190 SUPERFAMILY SSF53448 3 184 4.51E-23 T 22-04-2016 IPR029044 Nucleotide-diphospho-sugar transferases PP4_RS22765 65535d9f70c767be9182bdb190366dd9 60 Pfam PF14255 Cysteine-rich CPXCG 7 54 6.1E-23 T 22-04-2016 IPR025990 Cysteine-rich CPXCG protein PP4_RS22765 65535d9f70c767be9182bdb190366dd9 60 PIRSF PIRSF037225 1 60 1.4E-26 T 22-04-2016 IPR017143 Uncharacterised conserved protein UCP037225 PP4_RS12495 5f54e84838c242a64bcc6d0e132bb510 194 Gene3D G3DSA:3.40.1000.10 77 152 7.7E-7 T 22-04-2016 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich PP4_RS12495 5f54e84838c242a64bcc6d0e132bb510 194 Pfam PF08786 Domain of unknown function (DUF1795) 79 154 3.4E-7 T 22-04-2016 IPR014894 Protein DcrB PP4_RS12495 5f54e84838c242a64bcc6d0e132bb510 194 SUPERFAMILY SSF55724 78 150 1.46E-5 T 22-04-2016 IPR016123 Mog1/PsbP, alpha/beta/alpha sandwich PP4_RS15855 b60ed1017da1bb12b19a4a7239daa76f 378 Pfam PF07690 Major Facilitator Superfamily 223 372 2.8E-13 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS15855 b60ed1017da1bb12b19a4a7239daa76f 378 SUPERFAMILY SSF103473 33 375 2.62E-35 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS15855 b60ed1017da1bb12b19a4a7239daa76f 378 Gene3D G3DSA:1.20.1250.20 221 373 7.7E-13 T 22-04-2016 PP4_RS15855 b60ed1017da1bb12b19a4a7239daa76f 378 Gene3D G3DSA:1.20.1250.20 33 189 4.3E-16 T 22-04-2016 PP4_RS21855 f0a87ea3908410987bf618f037d88e70 394 Gene3D G3DSA:3.40.720.10 24 310 1.4E-29 T 22-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 PP4_RS21855 f0a87ea3908410987bf618f037d88e70 394 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 131 231 1.2E-7 T 22-04-2016 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 PP4_RS21855 f0a87ea3908410987bf618f037d88e70 394 SUPERFAMILY SSF53649 26 309 1.83E-28 T 22-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 PP4_RS03315 376a90ecb040d908b20fe66b89be53e7 189 Pfam PF13590 Domain of unknown function (DUF4136) 22 185 5.7E-31 T 22-04-2016 IPR025411 Domain of unknown function DUF4136 PP4_RS21130 e63d128182a796699508f01421b738c8 132 PANTHER PTHR38013 10 128 1.0E-36 T 22-04-2016 PP4_RS21130 e63d128182a796699508f01421b738c8 132 Pfam PF09619 Type III secretion system lipoprotein chaperone (YscW) 24 123 1.3E-35 T 22-04-2016 PP4_RS15315 9a19487958102125be20934b117be4ae 283 Pfam PF01740 STAS domain 168 267 2.2E-10 T 22-04-2016 IPR002645 STAS domain PP4_RS15315 9a19487958102125be20934b117be4ae 283 Gene3D G3DSA:3.30.750.24 162 254 1.9E-15 T 22-04-2016 IPR002645 STAS domain PP4_RS15315 9a19487958102125be20934b117be4ae 283 SUPERFAMILY SSF52091 161 271 8.63E-20 T 22-04-2016 IPR002645 STAS domain PP4_RS15315 9a19487958102125be20934b117be4ae 283 Pfam PF14361 RsbT co-antagonist protein rsbRD N-terminal domain 14 109 7.6E-20 T 22-04-2016 IPR025751 RsbT co-antagonist protein RsbRD, N-terminal domain PP4_RS15315 9a19487958102125be20934b117be4ae 283 PANTHER PTHR33745 67 283 6.4E-69 T 22-04-2016 PP4_RS15315 9a19487958102125be20934b117be4ae 283 PANTHER PTHR33745:SF1 67 283 6.4E-69 T 22-04-2016 PP4_RS04355 d25a019e6362942d328672be55c680bb 151 Pfam PF05258 Protein of unknown function (DUF721) 12 86 1.3E-12 T 22-04-2016 IPR007922 Protein of unknown function DUF721/UPF0232 PP4_RS27530 2cc616980e9a54bc580eb8745263373e 283 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 67 144 1.6E-19 T 22-04-2016 IPR022385 Rhs repeat-associated core GO:0097264 PP4_RS18085 af48776202172fce831511a3b13b46bc 121 Pfam PF03334 Na+/H+ antiporter subunit 18 98 5.0E-21 T 22-04-2016 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 PP4_RS18085 af48776202172fce831511a3b13b46bc 121 PANTHER PTHR34703:SF1 9 100 5.3E-19 T 22-04-2016 PP4_RS18085 af48776202172fce831511a3b13b46bc 121 PANTHER PTHR34703 9 100 5.3E-19 T 22-04-2016 PP4_RS18085 af48776202172fce831511a3b13b46bc 121 TIGRFAM TIGR01300 CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit 18 108 5.5E-22 T 22-04-2016 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:0015992 PP4_RS23850 ad4de4e32487325a052bf35f8224f428 213 SUPERFAMILY SSF161098 8 193 4.19E-38 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS23850 ad4de4e32487325a052bf35f8224f428 213 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 6 102 1.5E-21 T 22-04-2016 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0005215|GO:0006810|GO:0016021 PP4_RS23850 ad4de4e32487325a052bf35f8224f428 213 PANTHER PTHR30614 1 213 9.3E-63 T 22-04-2016 PP4_RS23850 ad4de4e32487325a052bf35f8224f428 213 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 27 211 6.0E-18 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS23850 ad4de4e32487325a052bf35f8224f428 213 Gene3D G3DSA:1.10.3720.10 7 208 8.9E-42 T 22-04-2016 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0006810|GO:0016020 PP4_RS09335 aa12291f5516997d7cdc1ca3a0cda47e 213 Pfam PF13181 Tetratricopeptide repeat 90 110 0.023 T 22-04-2016 IPR019734 Tetratricopeptide repeat GO:0005515 PP4_RS09335 aa12291f5516997d7cdc1ca3a0cda47e 213 Gene3D G3DSA:1.25.40.10 90 197 3.5E-13 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS09335 aa12291f5516997d7cdc1ca3a0cda47e 213 SUPERFAMILY SSF48452 61 179 1.9E-12 T 22-04-2016 IPR011990 Tetratricopeptide-like helical domain GO:0005515 PP4_RS09315 e648f00cbf21c9b48a6b983099e09044 196 PANTHER PTHR39201 15 196 1.1E-42 T 22-04-2016 PP4_RS09315 e648f00cbf21c9b48a6b983099e09044 196 Gene3D G3DSA:3.40.50.360 38 190 2.5E-18 T 22-04-2016 IPR029039 Flavoprotein-like domain PP4_RS09315 e648f00cbf21c9b48a6b983099e09044 196 PANTHER PTHR39201:SF1 15 196 1.1E-42 T 22-04-2016 PP4_RS09315 e648f00cbf21c9b48a6b983099e09044 196 SUPERFAMILY SSF52218 39 156 6.95E-19 T 22-04-2016 IPR029039 Flavoprotein-like domain PP4_RS09315 e648f00cbf21c9b48a6b983099e09044 196 Pfam PF12682 Flavodoxin 39 189 4.3E-30 T 22-04-2016 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 PP4_RS09815 5f6bddd6f82d61c62e39adbb1c315e85 261 Pfam PF09948 Predicted metal-binding integral membrane protein (DUF2182) 73 236 1.3E-25 T 22-04-2016 IPR018688 Protein of unknown function DUF2182, transmembrane, metal-binding PP4_RS15625 ab341a1ead479d2d356ec1e44aba2885 305 Pfam PF13557 Putative MetA-pathway of phenol degradation 64 286 2.4E-19 T 22-04-2016 IPR025737 MetA-pathway of phenol degradation, putative PP4_RS07965 cd7390f45fad8c9be690bfb491b5a242 84 PANTHER PTHR36931 1 83 1.4E-32 T 22-04-2016 PP4_RS04740 1f1b69117014e808d522da539d6bffb5 418 Gene3D G3DSA:2.40.160.10 34 418 1.1E-155 T 22-04-2016 IPR023614 Porin domain PP4_RS04740 1f1b69117014e808d522da539d6bffb5 418 Pfam PF03573 outer membrane porin, OprD family 30 416 2.9E-157 T 22-04-2016 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 PP4_RS04740 1f1b69117014e808d522da539d6bffb5 418 PANTHER PTHR34596 1 418 1.8E-168 T 22-04-2016 PP4_RS08525 a774fd5b9b0bb7069a6d033c1030eb02 152 PANTHER PTHR30531:SF3 3 151 2.3E-38 T 22-04-2016 PP4_RS08525 a774fd5b9b0bb7069a6d033c1030eb02 152 PANTHER PTHR30531 3 151 2.3E-38 T 22-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 PP4_RS08525 a774fd5b9b0bb7069a6d033c1030eb02 152 Pfam PF01312 FlhB HrpN YscU SpaS Family 5 151 1.2E-31 T 22-04-2016 IPR006135 Type III secretion system substrate exporter GO:0009306|GO:0016020 PP4_RS15670 8933f0dec3d4871bf216fa36a886506c 253 SUPERFAMILY SSF111369 43 247 2.48E-20 T 22-04-2016 PP4_RS15670 8933f0dec3d4871bf216fa36a886506c 253 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 40 248 4.5E-37 T 22-04-2016 IPR006143 RND efflux pump, membrane fusion protein GO:0016020|GO:0055085 PP4_RS15670 8933f0dec3d4871bf216fa36a886506c 253 Pfam PF13437 HlyD family secretion protein 142 234 2.6E-15 T 22-04-2016 PP4_RS15670 8933f0dec3d4871bf216fa36a886506c 253 PANTHER PTHR30469 40 253 4.2E-33 T 22-04-2016 PP4_RS15670 8933f0dec3d4871bf216fa36a886506c 253 Gene3D G3DSA:2.40.50.100 44 76 6.8E-12 T 22-04-2016 PP4_RS15670 8933f0dec3d4871bf216fa36a886506c 253 Gene3D G3DSA:2.40.50.100 134 170 6.8E-12 T 22-04-2016 PP4_RS16555 db339cc53c19f894990f328c352b24b3 80 Gene3D G3DSA:3.40.50.1820 5 77 1.2E-15 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS16555 db339cc53c19f894990f328c352b24b3 80 SUPERFAMILY SSF53474 3 77 9.8E-17 T 22-04-2016 IPR029058 Alpha/Beta hydrolase fold PP4_RS19190 6ef8b0eaf7a6d0053ac5799577362280 276 Pfam PF10977 Protein of unknown function (DUF2797) 39 272 9.6E-94 T 22-04-2016 IPR021246 Protein of unknown function DUF2797 PP4_RS11180 c1da04abb783130cad34cbd9f287b581 66 Pfam PF06945 Protein of unknown function (DUF1289) 7 51 3.5E-15 T 22-04-2016 IPR010710 Protein of unknown function DUF1289 PP4_RS14280 e269e7b2a057691785522b4280d25bf4 396 PANTHER PTHR30012:SF0 1 396 6.5E-103 T 22-04-2016 PP4_RS14280 e269e7b2a057691785522b4280d25bf4 396 PANTHER PTHR30012 1 396 6.5E-103 T 22-04-2016 PP4_RS14280 e269e7b2a057691785522b4280d25bf4 396 PRINTS PR00812 Bacterial general secretion pathway protein F signature 360 374 3.7E-19 T 22-04-2016 IPR003004 GspF/PilC family PP4_RS14280 e269e7b2a057691785522b4280d25bf4 396 PRINTS PR00812 Bacterial general secretion pathway protein F signature 59 71 3.7E-19 T 22-04-2016 IPR003004 GspF/PilC family PP4_RS14280 e269e7b2a057691785522b4280d25bf4 396 PRINTS PR00812 Bacterial general secretion pathway protein F signature 158 186 3.7E-19 T 22-04-2016 IPR003004 GspF/PilC family PP4_RS14280 e269e7b2a057691785522b4280d25bf4 396 PRINTS PR00812 Bacterial general secretion pathway protein F signature 376 395 3.7E-19 T 22-04-2016 IPR003004 GspF/PilC family PP4_RS14280 e269e7b2a057691785522b4280d25bf4 396 Pfam PF00482 Type II secretion system (T2SS), protein F 266 387 3.6E-24 T 22-04-2016 IPR018076 Type II secretion system F domain PP4_RS14280 e269e7b2a057691785522b4280d25bf4 396 Pfam PF00482 Type II secretion system (T2SS), protein F 63 186 2.7E-28 T 22-04-2016 IPR018076 Type II secretion system F domain PP4_RS03530 eb2f5e51076fa7d56fa2587f0d42c2d2 201 Pfam PF01066 CDP-alcohol phosphatidyltransferase 27 96 1.5E-11 T 22-04-2016 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 PP4_RS27300 4bf62e194ee1d17a4eae5e03beb26461 130 Pfam PF11743 Protein of unknown function (DUF3301) 8 101 1.6E-30 T 22-04-2016 IPR021732 Protein of unknown function DUF3301 PP4_RS13585 2b9afcfdb00b7ba5b2b2fcdd0f75737b 265 SUPERFAMILY SSF100950 5 251 4.19E-52 T 22-04-2016 PP4_RS13585 2b9afcfdb00b7ba5b2b2fcdd0f75737b 265 Gene3D G3DSA:3.40.810.20 6 252 1.8E-60 T 22-04-2016 PP4_RS04415 452d619390d056ca227f46efe97b6686 117 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 19 96 3.0E-20 T 22-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 PP4_RS04415 452d619390d056ca227f46efe97b6686 117 Gene3D G3DSA:1.10.10.10 19 100 2.3E-19 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS04415 452d619390d056ca227f46efe97b6686 117 SUPERFAMILY SSF46767 18 97 3.92E-21 T 22-04-2016 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 PP4_RS04415 452d619390d056ca227f46efe97b6686 117 PANTHER PTHR10815 20 114 3.7E-28 T 22-04-2016 PP4_RS04415 452d619390d056ca227f46efe97b6686 117 PANTHER PTHR10815:SF2 20 114 3.7E-28 T 22-04-2016 PP4_RS11160 971955735342755071a5b022e5d62e29 447 Gene3D G3DSA:2.40.160.10 36 447 2.9E-142 T 22-04-2016 IPR023614 Porin domain PP4_RS11160 971955735342755071a5b022e5d62e29 447 PANTHER PTHR34596 1 447 3.3E-159 T 22-04-2016 PP4_RS11160 971955735342755071a5b022e5d62e29 447 Pfam PF03573 outer membrane porin, OprD family 30 446 2.7E-154 T 22-04-2016 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 PP4_RS15305 99160a953c7f7b0681b8f77165f643bf 134 Gene3D G3DSA:3.30.565.10 7 131 1.8E-13 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS15305 99160a953c7f7b0681b8f77165f643bf 134 SUPERFAMILY SSF55874 22 131 4.66E-14 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS15305 99160a953c7f7b0681b8f77165f643bf 134 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 39 131 3.9E-9 T 22-04-2016 IPR003594 Histidine kinase-like ATPase, C-terminal domain PP4_RS00990 90677db448e5b0af4588edb27a11de58 160 Pfam PF09523 Protein of unknown function (DUF2390) 4 110 2.0E-32 T 22-04-2016 IPR012659 Conserved hypothetical protein CHP02444 PP4_RS00990 90677db448e5b0af4588edb27a11de58 160 TIGRFAM TIGR02444 TIGR02444: TIGR02444 family protein 3 113 4.5E-34 T 22-04-2016 IPR012659 Conserved hypothetical protein CHP02444 PP4_RS09535 aa7045b6f82789bc1b315c86c0babc59 230 SUPERFAMILY SSF54060 23 223 5.53E-82 T 22-04-2016 PP4_RS09535 aa7045b6f82789bc1b315c86c0babc59 230 PANTHER PTHR33607 20 221 2.0E-40 T 22-04-2016 PP4_RS09535 aa7045b6f82789bc1b315c86c0babc59 230 Pfam PF04231 Endonuclease I 24 221 3.6E-35 T 22-04-2016 IPR007346 Endonuclease I GO:0004518 PP4_RS24030 bd3048983c076ec32f73f7eb41943131 113 SUPERFAMILY SSF50891 2 110 4.93E-14 T 22-04-2016 IPR029000 Cyclophilin-like domain PP4_RS24030 bd3048983c076ec32f73f7eb41943131 113 Pfam PF04126 Cyclophilin-like 2 84 4.6E-5 T 22-04-2016 IPR025658 Cyclophilin TM1367-like domain PP4_RS15770 0ee26d3a589f3d2ddc627ee7ff638255 489 Pfam PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin 24 433 9.6E-25 T 22-04-2016 IPR001248 Purine-cytosine permease GO:0005215|GO:0016020|GO:0055085 PP4_RS22080 2b8cd79905bc8673b539e3c77ea2bf35 238 Pfam PF04402 Protein of unknown function (DUF541) 34 228 5.6E-27 T 22-04-2016 IPR007497 Protein of unknown function DUF541 PP4_RS14895 e6d983e325b542526dc01472d2f10f66 136 PANTHER PTHR12962 44 127 6.0E-28 T 22-04-2016 PP4_RS14895 e6d983e325b542526dc01472d2f10f66 136 PANTHER PTHR12962:SF1 44 127 6.0E-28 T 22-04-2016 PP4_RS14895 e6d983e325b542526dc01472d2f10f66 136 Pfam PF06961 Protein of unknown function (DUF1294) 53 107 1.9E-23 T 22-04-2016 IPR010718 Protein of unknown function DUF1294 PP4_RS17295 9e735d9b0645743cccebc30a37c212ae 164 Pfam PF06073 Bacterial protein of unknown function (DUF934) 55 161 2.5E-45 T 22-04-2016 IPR008318 Uncharacterised conserved protein UCP030820 PP4_RS17295 9e735d9b0645743cccebc30a37c212ae 164 PIRSF PIRSF030820 1 164 3.3E-67 T 22-04-2016 IPR008318 Uncharacterised conserved protein UCP030820 PP4_RS20605 4fdee7f742d357bcd9d3086fcaed4d3e 400 Pfam PF07690 Major Facilitator Superfamily 17 315 8.6E-31 T 22-04-2016 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 PP4_RS20605 4fdee7f742d357bcd9d3086fcaed4d3e 400 SUPERFAMILY SSF103473 5 391 1.24E-55 T 22-04-2016 IPR020846 Major facilitator superfamily domain PP4_RS20605 4fdee7f742d357bcd9d3086fcaed4d3e 400 PANTHER PTHR11360 4 396 1.6E-155 T 22-04-2016 PP4_RS20605 4fdee7f742d357bcd9d3086fcaed4d3e 400 PANTHER PTHR11360:SF115 4 396 1.6E-155 T 22-04-2016 PP4_RS20605 4fdee7f742d357bcd9d3086fcaed4d3e 400 Gene3D G3DSA:1.20.1250.20 211 393 1.8E-19 T 22-04-2016 PP4_RS20605 4fdee7f742d357bcd9d3086fcaed4d3e 400 Gene3D G3DSA:1.20.1250.20 10 195 1.8E-22 T 22-04-2016 PP4_RS08970 84725d4c77401cc18642b06bbb27813d 82 TIGRFAM TIGR04359 TrbK_RP4: entry exclusion lipoprotein TrbK 9 81 2.2E-8 T 22-04-2016 IPR027584 Entry exclusion lipoprotein TrbK PP4_RS18380 9865e6779254f507fcd673113d7b4706 238 PANTHER PTHR38477:SF1 1 231 2.7E-75 T 22-04-2016 PP4_RS18380 9865e6779254f507fcd673113d7b4706 238 PANTHER PTHR38477 1 231 2.7E-75 T 22-04-2016 PP4_RS18380 9865e6779254f507fcd673113d7b4706 238 Pfam PF13645 L,D-transpeptidase catalytic domain 46 210 1.8E-63 T 22-04-2016 IPR032676 Putative L,D-transpeptidase catalytic domain PP4_RS04180 7c6d6f4799db4c7518fd77319c7eb202 145 PANTHER PTHR39579 2 144 4.7E-39 T 22-04-2016 PP4_RS04180 7c6d6f4799db4c7518fd77319c7eb202 145 Pfam PF06295 Protein of unknown function (DUF1043) 14 130 1.3E-20 T 22-04-2016 IPR009386 Protein of unknown function DUF1043 PP4_RS04180 7c6d6f4799db4c7518fd77319c7eb202 145 PIRSF PIRSF006318 2 145 2.5E-35 T 22-04-2016 IPR009386 Protein of unknown function DUF1043 PP4_RS14635 df4a1739433ea97f9fbdc6001dcf4adf 209 SUPERFAMILY SSF63380 93 199 1.19E-27 T 22-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 PP4_RS14635 df4a1739433ea97f9fbdc6001dcf4adf 209 Gene3D G3DSA:2.40.30.20 105 200 7.0E-24 T 22-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PP4_RS14635 df4a1739433ea97f9fbdc6001dcf4adf 209 Gene3D G3DSA:2.40.30.20 5 104 7.4E-24 T 22-04-2016 IPR023366 ATP synthase subunit alpha-like domain KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7219 PP4_RS14635 df4a1739433ea97f9fbdc6001dcf4adf 209 PANTHER PTHR21098:SF4 1 196 9.7E-72 T 22-04-2016 PP4_RS14635 df4a1739433ea97f9fbdc6001dcf4adf 209 PANTHER PTHR21098 1 196 9.7E-72 T 22-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PP4_RS14635 df4a1739433ea97f9fbdc6001dcf4adf 209 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 199 8.8E-59 T 22-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PP4_RS14635 df4a1739433ea97f9fbdc6001dcf4adf 209 SUPERFAMILY SSF63380 1 90 1.02E-18 T 22-04-2016 IPR017938 Riboflavin synthase-like beta-barrel GO:0016491|GO:0055114 PP4_RS14635 df4a1739433ea97f9fbdc6001dcf4adf 209 Pfam PF00677 Lumazine binding domain 101 184 1.1E-17 T 22-04-2016 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PP4_RS14635 df4a1739433ea97f9fbdc6001dcf4adf 209 Pfam PF00677 Lumazine binding domain 3 86 1.3E-13 T 22-04-2016 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PP4_RS14635 df4a1739433ea97f9fbdc6001dcf4adf 209 PIRSF PIRSF000498 1 207 2.7E-57 T 22-04-2016 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168|UniPathway: UPA00275 PP4_RS19180 e805ce5d83bbda6cc1516feb92384970 342 Gene3D G3DSA:2.130.10.10 50 303 3.8E-40 T 22-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 PP4_RS19180 e805ce5d83bbda6cc1516feb92384970 342 PANTHER PTHR32010 51 249 1.7E-32 T 22-04-2016 PP4_RS19180 e805ce5d83bbda6cc1516feb92384970 342 SUPERFAMILY SSF110296 55 300 1.31E-52 T 22-04-2016 PP4_RS19180 e805ce5d83bbda6cc1516feb92384970 342 Pfam PF14870 Photosynthesis system II assembly factor YCF48 129 254 1.8E-17 T 22-04-2016 IPR028203 Photosynthesis system II assembly factor Ycf48/Hcf136-like domain PP4_RS02780 69534050910c4831d1de4af4e77e0336 170 Pfam PF11736 Protein of unknown function (DUF3299) 23 167 1.6E-48 T 22-04-2016 IPR021727 Protein of unknown function DUF3299 PP4_RS17450 75505b2064d9e59f69bb2c25d7042718 104 Pfam PF03413 Peptidase propeptide and YPEB domain 42 101 7.8E-12 T 22-04-2016 IPR025711 PepSY domain PP4_RS15605 2da46fbc8d76fa293bca6e552a3b220c 169 Pfam PF14316 Domain of unknown function (DUF4381) 11 163 1.7E-30 T 22-04-2016 IPR025489 Protein of unknown function (DUF4381 PP4_RS10020 d6738eaf6c42ab94a6ed2017571ec244 149 Pfam PF09722 Protein of unknown function (DUF2384) 97 146 5.5E-15 T 22-04-2016 IPR024467 Domain of unknown function DUF2384 PP4_RS10020 d6738eaf6c42ab94a6ed2017571ec244 149 TIGRFAM TIGR02293 TAS_TIGR02293: putative toxin-antitoxin system antitoxin component, TIGR02293 family 29 146 1.3E-19 T 22-04-2016 IPR011979 Conserved hypothetical protein CHP02293 PP4_RS12195 3c81fb43661fc317efedd18a50423ecd 279 Pfam PF14488 Domain of unknown function (DUF4434) 23 180 2.3E-17 T 22-04-2016 IPR027849 Protein of unknown function DUF4434 PP4_RS12765 04d62d848ba38b4f2b3ee0b07d9378b4 299 Pfam PF12833 Helix-turn-helix domain 216 296 4.4E-27 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS12765 04d62d848ba38b4f2b3ee0b07d9378b4 299 Gene3D G3DSA:1.10.10.60 247 293 1.5E-5 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS12765 04d62d848ba38b4f2b3ee0b07d9378b4 299 Gene3D G3DSA:1.10.10.60 188 246 2.6E-13 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS12765 04d62d848ba38b4f2b3ee0b07d9378b4 299 SMART SM00342 210 294 2.4E-20 T 22-04-2016 IPR018060 DNA binding HTH domain, AraC-type GO:0003700|GO:0006355|GO:0043565 PP4_RS12765 04d62d848ba38b4f2b3ee0b07d9378b4 299 PANTHER PTHR11019 160 298 1.8E-29 T 22-04-2016 PP4_RS12765 04d62d848ba38b4f2b3ee0b07d9378b4 299 SUPERFAMILY SSF46689 195 244 2.33E-7 T 22-04-2016 IPR009057 Homeodomain-like GO:0003677 PP4_RS12765 04d62d848ba38b4f2b3ee0b07d9378b4 299 PANTHER PTHR11019:SF54 160 298 1.8E-29 T 22-04-2016 PP4_RS20840 bef9cdf3558ef6db7544dbeea26a73ef 139 Pfam PF13652 Putative quorum-sensing-regulated virulence factor 22 132 9.4E-60 T 22-04-2016 IPR025203 Putative quorum-sensing-regulated virulence factor, QSregVF PP4_RS20310 2b8c9884eb4bafeae7b1d902d9f4655c 836 Pfam PF16967 Fimbrial, FimD or usher-like 269 336 3.8E-22 T 22-04-2016 IPR032636 Pilus assembly protein domain PP4_RS20310 2b8c9884eb4bafeae7b1d902d9f4655c 836 Pfam PF15976 CS1-pili formation C-terminal 724 819 3.6E-21 T 22-04-2016 IPR031917 Pilus assembly protein, C-terminal domain PP4_RS01620 a15a737650e987ea642c79acc26df77e 86 Pfam PF09932 Uncharacterized conserved protein (DUF2164) 11 84 1.7E-25 T 22-04-2016 IPR018680 Protein of unknown function DUF2164 PP4_RS20405 9b2d991497e5675080daf37f8762cd02 268 Gene3D G3DSA:3.40.720.10 3 229 8.8E-35 T 22-04-2016 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824|GO:0008152 PP4_RS20405 9b2d991497e5675080daf37f8762cd02 268 SUPERFAMILY SSF53649 2 255 6.05E-49 T 22-04-2016 IPR017850 Alkaline-phosphatase-like, core domain GO:0003824|GO:0008152 PP4_RS20405 9b2d991497e5675080daf37f8762cd02 268 Pfam PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase 5 210 5.4E-16 T 22-04-2016 IPR002591 Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase GO:0003824 PP4_RS16095 00e3ab4db899b12c94d0e5474edf3634 413 Pfam PF08874 Domain of unknown function (DUF1835) 101 209 3.1E-11 T 22-04-2016 IPR014973 Protein of unknown function DUF1835 PP4_RS16955 597621a00a265d929f9b40b907297936 438 SUPERFAMILY SSF50969 93 301 8.63E-14 T 22-04-2016 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like PP4_RS16955 597621a00a265d929f9b40b907297936 438 SUPERFAMILY SSF50969 355 419 8.63E-14 T 22-04-2016 IPR011044 Quinoprotein amine dehydrogenase, beta chain-like PP4_RS16955 597621a00a265d929f9b40b907297936 438 Gene3D G3DSA:2.130.10.10 148 307 8.8E-9 T 22-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 PP4_RS16955 597621a00a265d929f9b40b907297936 438 Gene3D G3DSA:2.130.10.10 357 418 8.8E-9 T 22-04-2016 IPR015943 WD40/YVTN repeat-like-containing domain GO:0005515 PP4_RS10235 773fe147153e071aeea109a1af56656a 224 SUPERFAMILY SSF49899 3 223 3.64E-54 T 22-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain PP4_RS10235 773fe147153e071aeea109a1af56656a 224 Gene3D G3DSA:2.60.120.200 3 216 1.4E-19 T 22-04-2016 IPR013320 Concanavalin A-like lectin/glucanase domain PP4_RS10235 773fe147153e071aeea109a1af56656a 224 Pfam PF08787 Alginate lyase 3 222 1.2E-38 T 22-04-2016 IPR014895 Alginate lyase 2 PP4_RS24735 1d5b1a74e10a2e9f099496932c425766 143 Pfam PF11162 Protein of unknown function (DUF2946) 23 138 4.8E-17 T 22-04-2016 IPR021333 Protein of unknown function DUF2946 PP4_RS13160 ec47cd3b4f996c492063d48f322f7adf 93 PIRSF PIRSF030200 1 93 1.0E-42 T 22-04-2016 IPR009359 Phenylacetic acid degradation B UniPathway: UPA00930 PP4_RS13160 ec47cd3b4f996c492063d48f322f7adf 93 Pfam PF06243 Phenylacetic acid degradation B 4 90 3.2E-38 T 22-04-2016 IPR009359 Phenylacetic acid degradation B UniPathway: UPA00930 PP4_RS13160 ec47cd3b4f996c492063d48f322f7adf 93 TIGRFAM TIGR02157 PA_CoA_Oxy2: phenylacetate-CoA oxygenase, PaaH subunit 4 93 6.9E-42 T 22-04-2016 IPR009359 Phenylacetic acid degradation B UniPathway: UPA00930 PP4_RS03540 a387287636071a71da143d1f1e47a658 254 Pfam PF01925 Sulfite exporter TauE/SafE 20 249 2.6E-25 T 22-04-2016 IPR002781 Transmembrane protein TauE-like GO:0016021 PP4_RS11405 b56791ae7b578437784c2436627bb934 215 Pfam PF07077 Protein of unknown function (DUF1345) 34 204 1.2E-56 T 22-04-2016 IPR009781 Protein of unknown function DUF1345 PP4_RS01505 81370be4ad47df30796492177431d2cc 157 SUPERFAMILY SSF47413 97 155 7.04E-6 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS01505 81370be4ad47df30796492177431d2cc 157 SMART SM00530 99 152 0.0051 T 22-04-2016 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 PP4_RS01505 81370be4ad47df30796492177431d2cc 157 Gene3D G3DSA:1.10.260.40 97 153 1.6E-7 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS25475 f6cd0ba85ea7242c7cfa1790612fb715 157 Pfam PF01584 CheW-like domain 14 110 1.7E-9 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS25475 f6cd0ba85ea7242c7cfa1790612fb715 157 SUPERFAMILY SSF50341 10 107 1.44E-9 T 22-04-2016 IPR002545 CheW-like domain GO:0004871|GO:0006935|GO:0007165 PP4_RS26325 2d0fb7ad2759ca80a69a486e0f8b8598 250 Pfam PF09832 Uncharacterized protein conserved in bacteria (DUF2059) 76 117 2.7E-6 T 22-04-2016 IPR018637 Domain of unknown function DUF2059 PP4_RS12535 bdebc4b2e2cd462bff4a1fbe6b654745 265 SUPERFAMILY SSF56399 62 91 5.47E-6 T 22-04-2016 PP4_RS12535 bdebc4b2e2cd462bff4a1fbe6b654745 265 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 20 97 1.5E-16 T 22-04-2016 IPR022385 Rhs repeat-associated core GO:0097264 PP4_RS27520 e8b462471b37b798e56586fc2a0709b5 1369 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 371 444 1.0E-12 T 22-04-2016 IPR010221 VCBS repeat PP4_RS27520 e8b462471b37b798e56586fc2a0709b5 1369 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 1019 1099 2.6E-14 T 22-04-2016 IPR010221 VCBS repeat PP4_RS27520 e8b462471b37b798e56586fc2a0709b5 1369 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 894 973 8.8E-15 T 22-04-2016 IPR010221 VCBS repeat PP4_RS27520 e8b462471b37b798e56586fc2a0709b5 1369 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 72 152 1.2E-13 T 22-04-2016 IPR010221 VCBS repeat PP4_RS27520 e8b462471b37b798e56586fc2a0709b5 1369 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 213 286 2.7E-16 T 22-04-2016 IPR010221 VCBS repeat PP4_RS27520 e8b462471b37b798e56586fc2a0709b5 1369 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 492 569 7.2E-14 T 22-04-2016 IPR010221 VCBS repeat PP4_RS27520 e8b462471b37b798e56586fc2a0709b5 1369 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 628 710 1.3E-16 T 22-04-2016 IPR010221 VCBS repeat PP4_RS27520 e8b462471b37b798e56586fc2a0709b5 1369 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 757 837 4.3E-7 T 22-04-2016 IPR010221 VCBS repeat PP4_RS27520 e8b462471b37b798e56586fc2a0709b5 1369 TIGRFAM TIGR01965 VCBS_repeat: VCBS repeat 1149 1204 1.0E-6 T 22-04-2016 IPR010221 VCBS repeat PP4_RS26025 17e9a508cd06b199bf399d76564d0846 144 Pfam PF14467 Domain of unknown function (DUF4426) 29 142 2.8E-39 T 22-04-2016 IPR025218 Domain of unknown function DUF4426 PP4_RS18495 1a3d68f155c1abf07ad2d54768854aeb 175 Pfam PF11937 Protein of unknown function (DUF3455) 35 173 1.5E-31 T 22-04-2016 IPR021851 Protein of unknown function DUF3455 PP4_RS14640 245bed3394e8d20c67aad50e43f1ee4d 233 Pfam PF06912 Protein of unknown function (DUF1275) 29 217 7.5E-30 T 22-04-2016 IPR010699 Protein of unknown function DUF1275 PP4_RS14640 245bed3394e8d20c67aad50e43f1ee4d 233 PANTHER PTHR37314:SF1 8 233 3.6E-59 T 22-04-2016 PP4_RS14640 245bed3394e8d20c67aad50e43f1ee4d 233 PANTHER PTHR37314 8 233 3.6E-59 T 22-04-2016 PP4_RS22875 d1556219d30881d3fc9a0f827f5d2c0d 251 PANTHER PTHR10953 1 247 2.6E-91 T 22-04-2016 PP4_RS22875 d1556219d30881d3fc9a0f827f5d2c0d 251 PANTHER PTHR10953:SF158 1 247 2.6E-91 T 22-04-2016 PP4_RS22875 d1556219d30881d3fc9a0f827f5d2c0d 251 Pfam PF00899 ThiF family 10 243 3.3E-60 T 22-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 PP4_RS22875 d1556219d30881d3fc9a0f827f5d2c0d 251 Gene3D G3DSA:3.40.50.720 2 247 7.5E-74 T 22-04-2016 IPR016040 NAD(P)-binding domain PP4_RS22875 d1556219d30881d3fc9a0f827f5d2c0d 251 SUPERFAMILY SSF69572 2 247 4.19E-85 T 22-04-2016 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 PP4_RS08365 aaa6842df00ea508c59e8bd28459b264 244 Pfam PF03958 Bacterial type II/III secretion system short domain 22 80 7.9E-8 T 22-04-2016 IPR005644 NolW-like PP4_RS08365 aaa6842df00ea508c59e8bd28459b264 244 Pfam PF00263 Bacterial type II and III secretion system protein 116 220 2.1E-11 T 22-04-2016 IPR004846 Type II/III secretion system GO:0009306 PP4_RS15680 dd494182c2ebb039e8324399bb451e75 696 PANTHER PTHR13325 124 543 4.2E-46 T 22-04-2016 IPR001193 Membrane-bound transcription factor site-2 protease GO:0004222|GO:0006508|GO:0016020 PP4_RS15680 dd494182c2ebb039e8324399bb451e75 696 PANTHER PTHR13325:SF4 124 543 4.2E-46 T 22-04-2016 PP4_RS15680 dd494182c2ebb039e8324399bb451e75 696 Pfam PF13437 HlyD family secretion protein 540 618 3.2E-8 T 22-04-2016 PP4_RS09215 592652cfa7f0451dea5be6df346d29c8 124 Pfam PF11367 Protein of unknown function (DUF3168) 14 106 1.8E-12 T 22-04-2016 IPR021508 Protein of unknown function DUF3168 PP4_RS02750 d0710f2999cbc41949607fc1183f8fcf 346 Gene3D G3DSA:3.60.130.10 154 331 1.1E-27 T 22-04-2016 PP4_RS02750 d0710f2999cbc41949607fc1183f8fcf 346 SUPERFAMILY SSF51197 156 330 1.24E-14 T 22-04-2016 PP4_RS19115 2245b446644d051a2c1bee0ecba56be0 422 Pfam PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) 5 142 4.5E-9 T 22-04-2016 IPR018712 Domain of unknown function DUF2235 PP4_RS19115 2245b446644d051a2c1bee0ecba56be0 422 Pfam PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) 154 246 9.2E-8 T 22-04-2016 IPR018712 Domain of unknown function DUF2235 PP4_RS14020 a6694e578036e121d954c1a521c392c1 292 Pfam PF13503 Domain of unknown function (DUF4123) 23 138 2.2E-14 T 22-04-2016 IPR025391 Domain of unknown function DUF4123 PP4_RS12060 f5ffdf66e157448436c92b185526dba6 187 Pfam PF10741 Type II secretion system (T2SS), protein M subtype b 94 185 2.6E-6 T 22-04-2016 IPR007690 Type II secretion system, protein M GO:0006858 PP4_RS12060 f5ffdf66e157448436c92b185526dba6 187 Gene3D G3DSA:3.30.70.60 88 184 1.5E-6 T 22-04-2016 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 PP4_RS14915 1817cc276fbe52f85079e9f37969c40b 189 PANTHER PTHR37512 7 189 5.9E-73 T 22-04-2016 PP4_RS14915 1817cc276fbe52f85079e9f37969c40b 189 Gene3D G3DSA:3.40.50.300 7 171 1.4E-47 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS14915 1817cc276fbe52f85079e9f37969c40b 189 Pfam PF13521 AAA domain 11 166 1.6E-23 T 22-04-2016 PP4_RS14915 1817cc276fbe52f85079e9f37969c40b 189 SUPERFAMILY SSF52540 8 171 1.07E-23 T 22-04-2016 IPR027417 P-loop containing nucleoside triphosphate hydrolase PP4_RS06535 b0eb8b4f4702c22bdacbf7c83ecf9fd2 185 PANTHER PTHR11071:SF265 28 185 4.2E-70 T 22-04-2016 PP4_RS06535 b0eb8b4f4702c22bdacbf7c83ecf9fd2 185 ProSitePatterns PS00170 Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 61 78 - T 22-04-2016 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site GO:0003755|GO:0006457 PP4_RS06535 b0eb8b4f4702c22bdacbf7c83ecf9fd2 185 Gene3D G3DSA:2.40.100.10 23 183 1.9E-55 T 22-04-2016 IPR029000 Cyclophilin-like domain PP4_RS06535 b0eb8b4f4702c22bdacbf7c83ecf9fd2 185 SUPERFAMILY SSF50891 23 183 2.63E-57 T 22-04-2016 IPR029000 Cyclophilin-like domain PP4_RS06535 b0eb8b4f4702c22bdacbf7c83ecf9fd2 185 PANTHER PTHR11071 28 185 4.2E-70 T 22-04-2016 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase GO:0003755|GO:0006457 PP4_RS06535 b0eb8b4f4702c22bdacbf7c83ecf9fd2 185 Pfam PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 27 182 2.7E-47 T 22-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 PP4_RS06535 b0eb8b4f4702c22bdacbf7c83ecf9fd2 185 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 40 55 2.1E-11 T 22-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 PP4_RS06535 b0eb8b4f4702c22bdacbf7c83ecf9fd2 185 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 139 154 2.1E-11 T 22-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 PP4_RS06535 b0eb8b4f4702c22bdacbf7c83ecf9fd2 185 PRINTS PR00153 Cyclophilin peptidyl-prolyl cis-trans isomerase signature 66 78 2.1E-11 T 22-04-2016 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain GO:0000413|GO:0003755|GO:0006457 PP4_RS03180 bd49479059551c9567e2d08f4a57431f 95 Pfam PF07119 Protein of unknown function (DUF1375) 8 81 1.8E-22 T 22-04-2016 IPR010780 Protein of unknown function DUF1375 PP4_RS17515 3a9b09c7585dff524e9cdc7098bbb094 511 Pfam PF14402 7 transmembrane helices usually fused to an inactive transglutaminase 196 505 3.9E-117 T 22-04-2016 IPR025840 7 transmembrane helices usually fused to an inactive transglutaminase PP4_RS17515 3a9b09c7585dff524e9cdc7098bbb094 511 Pfam PF14400 Inactive transglutaminase fused to 7 transmembrane helices 25 184 7.0E-48 T 22-04-2016 IPR025838 Inactive transglutaminase fused to 7 transmembrane helices PP4_RS12465 043a5f6c05342bbc290a49f10bb4b941 199 Pfam PF15538 Bacterial toxin 46 8 36 1.1E-6 T 22-04-2016 IPR028238 Bacterial toxin 46 PP4_RS12465 043a5f6c05342bbc290a49f10bb4b941 199 Pfam PF15538 Bacterial toxin 46 58 191 6.1E-75 T 22-04-2016 IPR028238 Bacterial toxin 46 PP4_RS15385 e01b8ea548c18c19b12a481c5ff3f6fa 213 Pfam PF06532 Protein of unknown function (DUF1109) 10 213 7.1E-64 T 22-04-2016 IPR009495 Protein of unknown function DUF1109 PP4_RS05755 9f29f0d24170a732fbb9ceb55bddc4cb 153 Pfam PF07308 Protein of unknown function (DUF1456) 3 70 1.7E-23 T 22-04-2016 IPR009921 Domain of unknown function DUF1456 PP4_RS05755 9f29f0d24170a732fbb9ceb55bddc4cb 153 Pfam PF07308 Protein of unknown function (DUF1456) 86 153 1.2E-24 T 22-04-2016 IPR009921 Domain of unknown function DUF1456 PP4_RS05755 9f29f0d24170a732fbb9ceb55bddc4cb 153 PANTHER PTHR37805 1 153 5.0E-77 T 22-04-2016 PP4_RS05755 9f29f0d24170a732fbb9ceb55bddc4cb 153 PANTHER PTHR37805:SF1 1 153 5.0E-77 T 22-04-2016 PP4_RS22160 feb8c5aa807922633ce3739c0a02e2c6 99 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 2 92 1.5E-18 T 22-04-2016 IPR009241 Toxin HigB-like PP4_RS19195 5083aa2df167d1517ab941dc6604f33e 86 Pfam PF07023 Protein of unknown function (DUF1315) 6 66 7.6E-27 T 22-04-2016 IPR009749 Protein of unknown function DUF1315 PP4_RS13130 bf8ff69d96142cf145e337639322f365 410 Gene3D G3DSA:2.40.160.10 28 410 5.0E-143 T 22-04-2016 IPR023614 Porin domain PP4_RS13130 bf8ff69d96142cf145e337639322f365 410 PANTHER PTHR34596 1 410 1.3E-157 T 22-04-2016 PP4_RS13130 bf8ff69d96142cf145e337639322f365 410 Pfam PF03573 outer membrane porin, OprD family 23 408 1.1E-153 T 22-04-2016 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 PP4_RS23775 c934330d0bec4dfdae7d41a403591521 178 PANTHER PTHR37482 2 164 3.2E-46 T 22-04-2016 PP4_RS23775 c934330d0bec4dfdae7d41a403591521 178 PANTHER PTHR37482:SF1 2 164 3.2E-46 T 22-04-2016 PP4_RS23775 c934330d0bec4dfdae7d41a403591521 178 Pfam PF04355 SmpA / OmlA family 35 101 8.8E-26 T 22-04-2016 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 PP4_RS23775 c934330d0bec4dfdae7d41a403591521 178 Hamap MF_00925 Outer membrane protein assembly factor BamE [bamE]. 6 150 37.519 T 22-04-2016 IPR026592 Outer membrane protein assembly factor BamE PP4_RS14395 b6d3283f78a61b2276c5a717e3b67402 384 SUPERFAMILY SSF55729 120 298 8.48E-12 T 22-04-2016 IPR016181 Acyl-CoA N-acyltransferase PP4_RS22810 da1bc37d2c5a811661b5616e1dc84447 157 Gene3D G3DSA:2.60.120.10 32 113 8.6E-6 T 22-04-2016 IPR014710 RmlC-like jelly roll fold PP4_RS22810 da1bc37d2c5a811661b5616e1dc84447 157 SUPERFAMILY SSF51182 36 127 1.31E-10 T 22-04-2016 IPR011051 RmlC-like cupin domain PP4_RS22810 da1bc37d2c5a811661b5616e1dc84447 157 TIGRFAM TIGR04366 cupin_WbuC: cupin fold metalloprotein, WbuC family 7 138 2.7E-44 T 22-04-2016 IPR027565 Cupin fold metalloprotein, WbuC family PP4_RS12225 ea352b511370964762b71c6d6c09804c 266 Gene3D G3DSA:3.90.1480.10 152 253 7.2E-13 T 22-04-2016 PP4_RS12225 ea352b511370964762b71c6d6c09804c 266 ProDom PD024016 LIPOPOLYSACCHARIDE BIOSYNTHESIS CORE RFAZ WAAZ 30 256 9.0E-19 T 22-04-2016 PP4_RS26670 40c6a5741e5ab7af5b3323d79d56bfa1 431 PANTHER PTHR21624 2 430 8.9E-136 T 22-04-2016 PP4_RS26670 40c6a5741e5ab7af5b3323d79d56bfa1 431 Pfam PF04116 Fatty acid hydroxylase superfamily 80 213 2.7E-31 T 22-04-2016 IPR006694 Fatty acid hydroxylase GO:0005506|GO:0006633|GO:0016491|GO:0055114 PP4_RS01700 963346db5bfbcd5f691e2102b0275560 133 Pfam PF07007 Protein of unknown function (DUF1311) 26 127 1.3E-9 T 22-04-2016 IPR009739 Protein of unknown function DUF1311 PP4_RS27490 1609886f30dc9ad413ceb1ae4f25cbab 290 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 53 131 1.8E-18 T 22-04-2016 IPR022385 Rhs repeat-associated core GO:0097264 PP4_RS27490 1609886f30dc9ad413ceb1ae4f25cbab 290 SUPERFAMILY SSF56399 94 126 1.35E-6 T 22-04-2016 PP4_RS00100 8653336b8b0cf925f68706d4227af302 108 Pfam PF10976 Protein of unknown function (DUF2790) 11 104 2.2E-24 T 22-04-2016 IPR021245 Protein of unknown function DUF2790 PP4_RS09890 07a812dd6bf2a8118ad24a6022f9cfc5 155 Pfam PF11776 Nickel/cobalt transporter regulator 124 147 9.3E-6 T 22-04-2016 IPR024572 Nickel/cobalt homeostasis protein RcnB PP4_RS27465 dc0f136d056eeca05ddd7fa98fd7dc5c 76 PANTHER PTHR33408 1 76 1.1E-17 T 22-04-2016 PP4_RS27465 dc0f136d056eeca05ddd7fa98fd7dc5c 76 PANTHER PTHR33408:SF2 1 76 1.1E-17 T 22-04-2016 PP4_RS15730 25c69e8cb55603891f0fde2989593b68 168 PANTHER PTHR10430 2 168 8.5E-72 T 22-04-2016 PP4_RS15730 25c69e8cb55603891f0fde2989593b68 168 SUPERFAMILY SSF52833 1 163 6.27E-33 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS15730 25c69e8cb55603891f0fde2989593b68 168 Gene3D G3DSA:3.40.30.10 1 166 6.3E-60 T 22-04-2016 IPR012336 Thioredoxin-like fold PP4_RS15730 25c69e8cb55603891f0fde2989593b68 168 Pfam PF08534 Redoxin 4 162 5.9E-32 T 22-04-2016 IPR013740 Redoxin GO:0016491 PP4_RS14070 ecf9f2724a250b8d12a32e04038c784f 204 Pfam PF06930 Protein of unknown function (DUF1282) 8 179 7.1E-33 T 22-04-2016 IPR009698 Protein of unknown function DUF1282 PP4_RS07575 bde9021110ee76a2240bf0f5e7f9a36d 449 PANTHER PTHR11119:SF9 18 438 6.6E-170 T 22-04-2016 IPR029940 AzgA purine transporter GO:0005345|GO:0006863 PP4_RS07575 bde9021110ee76a2240bf0f5e7f9a36d 449 PANTHER PTHR11119 18 438 6.6E-170 T 22-04-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 PP4_RS07575 bde9021110ee76a2240bf0f5e7f9a36d 449 PIRSF PIRSF005353 14 449 1.0E-173 T 22-04-2016 IPR026033 Purine permease PbuG-like PP4_RS07575 bde9021110ee76a2240bf0f5e7f9a36d 449 Pfam PF00860 Permease family 38 411 6.1E-49 T 22-04-2016 IPR006043 Xanthine/uracil/vitamin C permease GO:0005215|GO:0006810|GO:0016020|GO:0055085 PP4_RS03455 8a1e10a72806bdd7da2d8bee491daf25 188 Pfam PF13689 Domain of unknown function (DUF4154) 44 182 1.4E-33 T 22-04-2016 IPR025293 Protein of unknown function DUF4154 PP4_RS15480 3e457dbdb8b69c84ff6233db54c80e0d 221 SUPERFAMILY SSF158682 71 218 1.01E-21 T 22-04-2016 IPR029024 TerB-like PP4_RS15480 3e457dbdb8b69c84ff6233db54c80e0d 221 Gene3D G3DSA:1.10.3680.10 71 218 5.1E-20 T 22-04-2016 IPR029024 TerB-like PP4_RS15480 3e457dbdb8b69c84ff6233db54c80e0d 221 Pfam PF04391 Protein of unknown function (DUF533) 35 217 2.7E-54 T 22-04-2016 IPR007486 Inner membrane protein YebE PP4_RS15590 834d90ef1ba0dd4433bf9323295844c5 434 Pfam PF13584 Oxygen tolerance 61 347 4.1E-24 T 22-04-2016 IPR025738 Aerotolerance-related protein BatD PP4_RS18725 687fae21159c7276e03a18ca125ca056 169 Gene3D G3DSA:1.20.120.160 8 103 5.7E-4 T 22-04-2016 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain GO:0000160|GO:0004871 PP4_RS03505 80283a59590f339de9644870442845a8 310 Pfam PF01148 Cytidylyltransferase family 43 307 4.1E-66 T 22-04-2016 PP4_RS03505 80283a59590f339de9644870442845a8 310 PANTHER PTHR13773:SF11 26 308 8.5E-132 T 22-04-2016 PP4_RS03505 80283a59590f339de9644870442845a8 310 PANTHER PTHR13773 26 308 8.5E-132 T 22-04-2016 PP4_RS08530 e8c46e0825685d77aadbc4b7a1e8d798 190 Pfam PF09482 Bacterial type III secretion apparatus protein (OrgA_MxiK) 9 184 5.6E-30 T 22-04-2016 IPR013388 Type III secretion apparatus protein OrgA/MxiK GO:0009405 PP4_RS27515 f5542780018f386b01d07c973fd90a10 182 PANTHER PTHR35149:SF2 26 157 3.2E-14 T 22-04-2016 PP4_RS27515 f5542780018f386b01d07c973fd90a10 182 PANTHER PTHR35149 26 157 3.2E-14 T 22-04-2016 PP4_RS16640 6f6b795ce4c07d5e74e675406691aec2 286 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 3 269 1.2E-94 T 22-04-2016 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 PP4_RS16640 6f6b795ce4c07d5e74e675406691aec2 286 Pfam PF05681 Fumarate hydratase (Fumerase) 3 268 4.6E-73 T 22-04-2016 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 PP4_RS16640 6f6b795ce4c07d5e74e675406691aec2 286 PANTHER PTHR30389 1 283 1.2E-162 T 22-04-2016 PP4_RS16640 6f6b795ce4c07d5e74e675406691aec2 286 PANTHER PTHR30389:SF3 1 283 1.2E-162 T 22-04-2016 PP4_RS26605 5856a96cc3c47242978cb3fdc616b9a3 370 PANTHER PTHR30294 1 366 1.0E-144 T 22-04-2016 PP4_RS26605 5856a96cc3c47242978cb3fdc616b9a3 370 PANTHER PTHR30294:SF22 1 366 1.0E-144 T 22-04-2016 PP4_RS26605 5856a96cc3c47242978cb3fdc616b9a3 370 Pfam PF12698 ABC-2 family transporter protein 25 361 3.7E-38 T 22-04-2016 PP4_RS18555 0c403a32408201db733cb5dd78d90e36 188 SUPERFAMILY SSF56784 27 177 2.09E-21 T 22-04-2016 IPR023214 HAD-like domain PP4_RS18555 0c403a32408201db733cb5dd78d90e36 188 Gene3D G3DSA:3.40.50.1000 8 176 7.1E-8 T 22-04-2016 IPR023214 HAD-like domain PP4_RS01785 14941d159d1e31020a1eb8540b6aa3d6 111 TIGRFAM TIGR01374 soxD: sarcosine oxidase, delta subunit family 4 87 7.1E-40 T 22-04-2016 IPR006279 Sarcosine oxidase, delta subunit, heterotetrameric GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 PP4_RS01785 14941d159d1e31020a1eb8540b6aa3d6 111 Pfam PF04267 Sarcosine oxidase, delta subunit family 4 84 4.2E-36 T 22-04-2016 IPR006279 Sarcosine oxidase, delta subunit, heterotetrameric GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 PP4_RS27405 1ff9ff47ca4d75a3f14dff19252e7f4c 135 Pfam PF03899 ATP synthase I chain 19 114 2.7E-23 T 22-04-2016 IPR005598 ATP synthase protein I PP4_RS18375 be031258b54d964b2ae558909b8ba258 276 SMART SM00862 16 90 0.0011 T 22-04-2016 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 PP4_RS18375 be031258b54d964b2ae558909b8ba258 276 Gene3D G3DSA:1.10.10.10 3 90 4.1E-5 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS18375 be031258b54d964b2ae558909b8ba258 276 SUPERFAMILY SSF46894 4 90 1.02E-6 T 22-04-2016 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 PP4_RS06040 bc4ae42fb38349acd2efe5d871705266 90 Pfam PF11275 Protein of unknown function (DUF3077) 11 84 1.6E-17 T 22-04-2016 IPR021427 Protein of unknown function DUF3077 PP4_RS15915 ba1493d090394e5f21e1b152251df862 153 Gene3D G3DSA:1.10.760.10 61 150 2.3E-20 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS15915 ba1493d090394e5f21e1b152251df862 153 SUPERFAMILY SSF46626 6 148 1.1E-19 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS15915 ba1493d090394e5f21e1b152251df862 153 TIGRFAM TIGR04494 c550_PedF: cytochrome c-550 PedF 11 152 2.9E-66 T 22-04-2016 IPR030991 Cytochrome c-550 PedF PP4_RS15915 ba1493d090394e5f21e1b152251df862 153 Pfam PF13442 Cytochrome C oxidase, cbb3-type, subunit III 69 146 6.8E-14 T 22-04-2016 IPR009056 Cytochrome c-like domain GO:0009055|GO:0020037 PP4_RS23305 f7c95bc197e19505213b45666445db32 57 Pfam PF11293 Protein of unknown function (DUF3094) 2 56 7.7E-35 T 22-04-2016 IPR021444 Protein of unknown function DUF3094 PP4_RS10285 61b3d76933f535445a72695bbe7cfbbf 429 PANTHER PTHR34596 1 429 6.0E-170 T 22-04-2016 PP4_RS10285 61b3d76933f535445a72695bbe7cfbbf 429 Gene3D G3DSA:2.40.160.10 33 429 3.7E-146 T 22-04-2016 IPR023614 Porin domain PP4_RS10285 61b3d76933f535445a72695bbe7cfbbf 429 Pfam PF03573 outer membrane porin, OprD family 28 428 7.2E-156 T 22-04-2016 IPR005318 Outer membrane porin, bacterial GO:0006810|GO:0015288|GO:0016021 PP4_RS22745 6f18d023f2990a1117d7dbf159fbb3d1 194 PANTHER PTHR12608 10 190 5.7E-34 T 22-04-2016 IPR001727 Uncharacterised protein family UPF0016 GO:0016020 PP4_RS22745 6f18d023f2990a1117d7dbf159fbb3d1 194 Pfam PF01169 Uncharacterized protein family UPF0016 10 79 4.8E-19 T 22-04-2016 IPR001727 Uncharacterised protein family UPF0016 GO:0016020 PP4_RS22745 6f18d023f2990a1117d7dbf159fbb3d1 194 Pfam PF01169 Uncharacterized protein family UPF0016 104 179 7.6E-21 T 22-04-2016 IPR001727 Uncharacterised protein family UPF0016 GO:0016020 PP4_RS04825 420f1e301f6422aa0baa0885ec52e9cd 250 Pfam PF03988 Repeat of Unknown Function (DUF347) 65 113 8.5E-16 T 22-04-2016 IPR007136 Protein of unknown function DUF347 PP4_RS04825 420f1e301f6422aa0baa0885ec52e9cd 250 Pfam PF03988 Repeat of Unknown Function (DUF347) 185 240 2.4E-15 T 22-04-2016 IPR007136 Protein of unknown function DUF347 PP4_RS04825 420f1e301f6422aa0baa0885ec52e9cd 250 Pfam PF03988 Repeat of Unknown Function (DUF347) 10 61 1.0E-15 T 22-04-2016 IPR007136 Protein of unknown function DUF347 PP4_RS04825 420f1e301f6422aa0baa0885ec52e9cd 250 Pfam PF03988 Repeat of Unknown Function (DUF347) 130 180 5.4E-16 T 22-04-2016 IPR007136 Protein of unknown function DUF347 PP4_RS13420 31a8602a82568d0ab557c46366ed93cd 176 SUPERFAMILY SSF52518 8 164 3.29E-16 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS13420 31a8602a82568d0ab557c46366ed93cd 176 Gene3D G3DSA:3.40.50.970 5 160 3.4E-10 T 22-04-2016 IPR029061 Thiamin diphosphate-binding fold PP4_RS13420 31a8602a82568d0ab557c46366ed93cd 176 Pfam PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 9 156 1.5E-12 T 22-04-2016 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain GO:0030976 PP4_RS20770 6bde6198c8bcaeed6827c4f04ab1aa32 134 PANTHER PTHR35535 18 133 7.4E-20 T 22-04-2016 PP4_RS20770 6bde6198c8bcaeed6827c4f04ab1aa32 134 Pfam PF03724 META domain 26 127 8.1E-27 T 22-04-2016 IPR005184 Domain of unknown function DUF306, Meta/HslJ PP4_RS20770 6bde6198c8bcaeed6827c4f04ab1aa32 134 PANTHER PTHR35535:SF2 18 133 7.4E-20 T 22-04-2016 PP4_RS14740 24fefd873cf9e40fa5c054ef3c3d8619 184 Pfam PF11655 Protein of unknown function (DUF2589) 13 158 1.1E-26 T 22-04-2016 IPR024510 Protein of unknown function DUF2589 PP4_RS20135 7eae1d45043654e96eabe20338d36c4b 87 Pfam PF06305 Protein of unknown function (DUF1049) 26 83 1.6E-10 T 22-04-2016 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 PP4_RS16900 91c360d1deb8c041983a18357f78bb28 210 Gene3D G3DSA:3.40.50.10190 125 205 9.4E-11 T 22-04-2016 IPR001357 BRCT domain PP4_RS16900 91c360d1deb8c041983a18357f78bb28 210 SUPERFAMILY SSF52113 123 204 2.16E-6 T 22-04-2016 IPR001357 BRCT domain PP4_RS27310 d49935c704e38574716daeae929d5197 208 Pfam PF08856 Protein of unknown function (DUF1826) 16 205 1.7E-61 T 22-04-2016 IPR014955 Protein of unknown function DUF1826 PP4_RS18270 509ced3f66571a4351af74edbee4618f 67 Pfam PF11390 NADH-dependant formate dehydrogenase delta subunit FdsD 5 66 6.1E-25 T 22-04-2016 IPR021074 Formate dehydrogenase, delta subunit PP4_RS26060 ddcc2aec1de9016aee23b8c63e709d56 123 PANTHER PTHR10584 5 66 3.1E-18 T 22-04-2016 PP4_RS26060 ddcc2aec1de9016aee23b8c63e709d56 123 Pfam PF04241 Protein of unknown function (DUF423) 19 105 1.4E-28 T 22-04-2016 IPR006696 Protein of unknown function DUF423 PP4_RS26060 ddcc2aec1de9016aee23b8c63e709d56 123 PANTHER PTHR10584:SF191 5 66 3.1E-18 T 22-04-2016 PP4_RS08495 837077c53872971151bb93d48ff8d450 151 Pfam PF02090 Salmonella surface presentation of antigen gene type M protein 10 145 2.6E-19 T 22-04-2016 IPR002954 Salmonella surface presentation of antigen M protein PP4_RS06060 b3c0bf6f3ef2e080a8652e17ff113949 63 Pfam PF13978 Protein of unknown function (DUF4223) 1 57 2.1E-32 T 22-04-2016 IPR025318 Protein of unknown function DUF4223 PP4_RS10200 241d16aad28005d58ddfa0cf26f3a14a 179 PIRSF PIRSF029505 1 178 1.1E-89 T 22-04-2016 IPR016922 Uncharacterised conserved protein UCP029505 PP4_RS12670 436e795834ecf1d68c562fa903e54301 866 Gene3D G3DSA:3.20.20.80 250 432 5.1E-56 T 22-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PP4_RS12670 436e795834ecf1d68c562fa903e54301 866 Gene3D G3DSA:3.20.20.80 476 637 5.1E-56 T 22-04-2016 IPR013781 Glycoside hydrolase, catalytic domain GO:0005975 PP4_RS12670 436e795834ecf1d68c562fa903e54301 866 SUPERFAMILY SSF51445 254 435 1.39E-29 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily PP4_RS12670 436e795834ecf1d68c562fa903e54301 866 SUPERFAMILY SSF51445 483 608 1.39E-29 T 22-04-2016 IPR017853 Glycoside hydrolase superfamily PP4_RS12670 436e795834ecf1d68c562fa903e54301 866 Pfam PF00150 Cellulase (glycosyl hydrolase family 5) 268 406 7.6E-7 T 22-04-2016 IPR001547 Glycoside hydrolase, family 5 GO:0004553|GO:0005975 PP4_RS22990 b2f0b2594c9d74d3ea9646355d84534a 405 Pfam PF11902 Protein of unknown function (DUF3422) 2 401 7.7E-122 T 22-04-2016 IPR021830 Protein of unknown function DUF3422 PP4_RS07945 75f2051e1812f71b414d35d7c5ce1690 117 Pfam PF14346 Domain of unknown function (DUF4398) 12 110 3.2E-23 T 22-04-2016 IPR025511 Domain of unknown function DUF4398 PP4_RS02940 467685c329e5d7058031cee2323b24a9 398 Pfam PF00589 Phage integrase family 191 329 4.5E-12 T 22-04-2016 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 PP4_RS02940 467685c329e5d7058031cee2323b24a9 398 Gene3D G3DSA:1.10.443.10 165 330 4.4E-20 T 22-04-2016 IPR013762 Integrase-like, catalytic domain GO:0003677|GO:0006310|GO:0015074 PP4_RS02940 467685c329e5d7058031cee2323b24a9 398 SUPERFAMILY SSF56349 167 330 4.12E-16 T 22-04-2016 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 PP4_RS15405 001dbde5b95da7f7aeeb15f35729a1a7 251 Pfam PF09836 Putative DNA-binding domain 7 93 4.8E-18 T 22-04-2016 IPR018640 Putative DNA-binding domain, bacteria PP4_RS00405 61a4491e4bb5cfe4cc86b9e23830dd79 77 ProDom PD336997 PRECURSOR SIGNAL MEMBRANE OUTER YNFD ESCHERICHIA EXPORTED PP0087 COLI PP0090 1 74 2.0E-26 T 22-04-2016 IPR010595 Protein of unknown function DUF1161 PP4_RS00405 61a4491e4bb5cfe4cc86b9e23830dd79 77 Pfam PF06649 Protein of unknown function (DUF1161) 24 74 2.7E-25 T 22-04-2016 IPR010595 Protein of unknown function DUF1161 PP4_RS15275 c0b4813cdf311e951034152258561d85 90 Pfam PF13670 Peptidase propeptide and YPEB domain 11 87 1.6E-20 T 22-04-2016 IPR025711 PepSY domain PP4_RS17455 8893e4b4a98e575e56d1c34c3bef6d74 102 Pfam PF03413 Peptidase propeptide and YPEB domain 41 99 4.7E-15 T 22-04-2016 IPR025711 PepSY domain PP4_RS10000 a419d28856b03103664a721475100a5a 99 Pfam PF11275 Protein of unknown function (DUF3077) 18 88 2.7E-27 T 22-04-2016 IPR021427 Protein of unknown function DUF3077 PP4_RS13465 9b35c4685f77b9650003b16a5a924a29 371 Pfam PF13515 Fusaric acid resistance protein-like 234 354 1.3E-7 T 22-04-2016 PP4_RS13465 9b35c4685f77b9650003b16a5a924a29 371 Pfam PF04632 Fusaric acid resistance protein family 38 180 3.4E-13 T 22-04-2016 IPR006726 Para-hydroxybenzoic acid efflux pump subunit AaeB/fusaric acid resistance protein GO:0005886|GO:0006810 PP4_RS03840 1682acaf2bf5536bde79eeaf4818aed5 139 Pfam PF01478 Type IV leader peptidase family 5 106 1.8E-8 T 22-04-2016 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 PP4_RS07915 ced961ef483bccca4cbb707428e574aa 159 Gene3D G3DSA:3.40.50.2300 4 75 3.5E-6 T 22-04-2016 PP4_RS07915 ced961ef483bccca4cbb707428e574aa 159 SUPERFAMILY SSF52172 5 76 6.97E-7 T 22-04-2016 IPR011006 CheY-like superfamily PP4_RS12675 5c5e36db3f90c194d42b896706788e88 508 Pfam PF04932 O-Antigen ligase 281 420 7.2E-11 T 22-04-2016 IPR007016 O-antigen ligase-related PP4_RS21515 fca8a3316e8f16b6c95c347f4de317fd 546 Gene3D G3DSA:3.60.21.10 100 316 1.1E-17 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS21515 fca8a3316e8f16b6c95c347f4de317fd 546 SUPERFAMILY SSF56300 100 311 1.9E-26 T 22-04-2016 IPR029052 Metallo-dependent phosphatase-like PP4_RS07705 07a44625610e3a8a6520cb18e8a598ba 71 PANTHER PTHR41532 2 69 1.3E-19 T 22-04-2016 PP4_RS07705 07a44625610e3a8a6520cb18e8a598ba 71 Pfam PF03597 Cytochrome oxidase maturation protein cbb3-type 4 45 2.2E-22 T 22-04-2016 IPR004714 Cytochrome oxidase maturation protein cbb3-type PP4_RS07705 07a44625610e3a8a6520cb18e8a598ba 71 TIGRFAM TIGR00847 ccoS: cytochrome oxidase maturation protein, cbb3-type 1 47 6.8E-17 T 22-04-2016 IPR004714 Cytochrome oxidase maturation protein cbb3-type PP4_RS03035 c97b4c906ac947537923107b4da2254a 434 Pfam PF13584 Oxygen tolerance 35 345 5.5E-25 T 22-04-2016 IPR025738 Aerotolerance-related protein BatD PP4_RS13660 351eb846c252bf5bab4c5fb9e82295f8 452 Pfam PF07044 Protein of unknown function (DUF1329) 83 446 3.5E-119 T 22-04-2016 IPR010752 Protein of unknown function DUF1329 PP4_RS13660 351eb846c252bf5bab4c5fb9e82295f8 452 Gene3D G3DSA:2.50.20.10 339 440 5.7E-37 T 22-04-2016 PP4_RS13660 351eb846c252bf5bab4c5fb9e82295f8 452 Gene3D G3DSA:2.50.20.10 158 306 5.7E-37 T 22-04-2016 PP4_RS26720 e2b6b74770bab9dc8c6ac08bb032808a 236 PANTHER PTHR38765 3 236 2.3E-73 T 22-04-2016 PP4_RS26720 e2b6b74770bab9dc8c6ac08bb032808a 236 Pfam PF04340 Protein of unknown function, DUF484 11 228 2.1E-71 T 22-04-2016 IPR007435 Protein of unknown function DUF484 PP4_RS24610 252ee5e7be55142c0157a3abc2eff16f 238 PANTHER PTHR30249 1 236 9.4E-90 T 22-04-2016 PP4_RS24610 252ee5e7be55142c0157a3abc2eff16f 238 PANTHER PTHR30249:SF5 1 236 9.4E-90 T 22-04-2016 PP4_RS24610 252ee5e7be55142c0157a3abc2eff16f 238 Pfam PF04172 LrgB-like family 23 235 1.5E-72 T 22-04-2016 IPR007300 CidB/LrgB family PP4_RS00880 e74e83c8775fb8b5a3781e75811d6d28 186 SUPERFAMILY SSF46785 13 61 7.16E-6 T 22-04-2016 IPR011991 Winged helix-turn-helix DNA-binding domain PP4_RS00880 e74e83c8775fb8b5a3781e75811d6d28 186 Pfam PF13280 WYL domain 85 179 7.4E-8 T 22-04-2016 IPR026881 WYL domain PP4_RS08535 96101d81c5f3b9ceb68d271b9737f6a9 206 ProDom PD038222 INVASION PLASMID OXYGEN-REGULATED III SECRETION MXIN TYPE SYSTEM PATHWAY ORGB 2 181 8.0E-4 T 22-04-2016 PP4_RS13055 a6a810a8815829ab734e6824fda094c5 58 Pfam PF10685 Stress-induced bacterial acidophilic repeat motif 24 44 1.3E-10 T 22-04-2016 IPR019626 Stress-induced protein, KGG, repeat PP4_RS17795 d2e423ab858efaf7d453efe88400acac 354 PANTHER PTHR37814 1 345 2.9E-62 T 22-04-2016 PP4_RS17795 d2e423ab858efaf7d453efe88400acac 354 PANTHER PTHR37814:SF1 1 345 2.9E-62 T 22-04-2016 PP4_RS10480 4c6a6151083bd22259dd487abd3ddfef 554 Pfam PF02538 Hydantoinase B/oxoprolinase 8 520 8.3E-139 T 22-04-2016 IPR003692 Hydantoinase B/oxoprolinase GO:0003824 PP4_RS10480 4c6a6151083bd22259dd487abd3ddfef 554 PANTHER PTHR11365 8 525 3.2E-64 T 22-04-2016 PP4_RS19985 0f713c464a256cec89b58898d9115ca4 341 Pfam PF01757 Acyltransferase family 7 327 3.1E-35 T 22-04-2016 IPR002656 Acyltransferase 3 GO:0016747 PP4_RS20455 04521ef186241b15792af17aa3f6864c 146 Pfam PF06803 Protein of unknown function (DUF1232) 67 102 2.9E-13 T 22-04-2016 IPR010652 Protein of unknown function DUF1232 UniPathway: UPA00143 PP4_RS00715 ac2ffafb90d66a42bea4bacc2a242e13 97 Pfam PF09498 Protein of unknown function (DUF2388) 28 96 5.0E-30 T 22-04-2016 IPR012661 Conserved hypothetical protein CHP02448 PP4_RS00715 ac2ffafb90d66a42bea4bacc2a242e13 97 TIGRFAM TIGR02448 TIGR02448: conserverd hypothetical protein 7 97 6.0E-33 T 22-04-2016 IPR012661 Conserved hypothetical protein CHP02448 PP4_RS16840 0571624ee193a1042d020538be224bf1 123 Pfam PF10861 Protein of Unknown function (DUF2784) 4 111 1.6E-35 T 22-04-2016 IPR021218 Protein of unknown function DUF2784 PP4_RS03835 3a25dc55d51246234f87f8aacd3de6d2 147 Pfam PF07811 TadE-like protein 11 53 8.4E-6 T 22-04-2016 IPR012495 TadE-like PP4_RS17720 9c545346898f5ee4318f27263d0486c8 90 Pfam PF09928 Predicted small integral membrane protein (DUF2160) 3 90 3.6E-35 T 22-04-2016 IPR018678 Protein of unknown function DUF2160, transmembrane PP4_RS21465 6a7fbf06538492efd070259227e8aa0a 128 TIGRFAM TIGR04412 T2SS_GspM_XcpZ: type II secretion system protein M 4 127 1.2E-42 T 22-04-2016 IPR030927 Type II secretion system protein M, XcpZ PP4_RS19455 78cc149b5eb7b6da0fbe0ba2431510e6 201 Pfam PF16105 Domain of unknown function (DUF4823) 48 196 2.3E-56 T 22-04-2016 IPR032248 Protein of unknown function DUF4823 PP4_RS04035 1be1917f1fe64c646ea95637db36dd25 215 ProDom PD022759 ALGINATE BIOSYNTHESIS ALGF PRECURSOR SIGNAL PERIPLASMIC TRANSFERASE O-ACETYLTRANSFERASE 1 215 2.0E-108 T 22-04-2016 PP4_RS04035 1be1917f1fe64c646ea95637db36dd25 215 Pfam PF11182 Alginate O-acetyl transferase AlgF 15 192 5.2E-84 T 22-04-2016 PP4_RS24275 9a4fc94db701813185a8bf2f13cf8a49 302 Pfam PF13557 Putative MetA-pathway of phenol degradation 68 297 5.8E-25 T 22-04-2016 IPR025737 MetA-pathway of phenol degradation, putative PP4_RS13080 3f82994e76fd0e5563fc312b89787bf6 195 Pfam PF01048 Phosphorylase superfamily 136 178 9.0E-6 T 22-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 PP4_RS13080 3f82994e76fd0e5563fc312b89787bf6 195 Pfam PF01048 Phosphorylase superfamily 31 95 5.6E-7 T 22-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 PP4_RS13080 3f82994e76fd0e5563fc312b89787bf6 195 SUPERFAMILY SSF53167 28 193 9.82E-31 T 22-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 PP4_RS13080 3f82994e76fd0e5563fc312b89787bf6 195 Gene3D G3DSA:3.40.50.1580 30 191 6.5E-31 T 22-04-2016 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 PP4_RS11285 912ea2d07d0f915650c77c56a2d1e49b 216 Pfam PF06197 Protein of unknown function (DUF998) 14 200 1.9E-30 T 22-04-2016 IPR009339 Protein of unknown function DUF998 PP4_RS15320 f57e03abf65001c628a7aa9d58638ae6 138 Pfam PF04120 Low affinity iron permease 3 117 3.9E-48 T 22-04-2016 IPR007251 Low affinity iron permease, Fet4 GO:0055085 PP4_RS00270 7c19abb83b4788f3e4f2b35952789d35 295 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 8 286 4.1E-46 T 22-04-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 PP4_RS00270 7c19abb83b4788f3e4f2b35952789d35 295 PIRSF PIRSF026649 1 295 1.8E-96 T 22-04-2016 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 PP4_RS00270 7c19abb83b4788f3e4f2b35952789d35 295 PANTHER PTHR30606:SF5 7 295 2.9E-111 T 22-04-2016 PP4_RS00270 7c19abb83b4788f3e4f2b35952789d35 295 PANTHER PTHR30606 7 295 2.9E-111 T 22-04-2016 PP4_RS11775 2708c02a06b83c48f07a3771663a0c5e 297 Pfam PF11453 Protein of unknown function (DUF2950) 24 291 9.3E-108 T 22-04-2016 IPR021556 Protein of unknown function DUF2950 PP4_RS08975 25eaa5795bd13adedb34b1cbbe59a80b 89 Pfam PF11275 Protein of unknown function (DUF3077) 11 84 9.7E-15 T 22-04-2016 IPR021427 Protein of unknown function DUF3077 PP4_RS19065 2b1220fbe6f5775e14cbbcb72aa418a4 434 TIGRFAM TIGR00784 citMHS: citrate transporter 1 432 4.8E-196 T 22-04-2016 IPR014738 Citrate transporter GO:0015137|GO:0015746 PP4_RS19065 2b1220fbe6f5775e14cbbcb72aa418a4 434 PANTHER PTHR10283 7 433 1.5E-162 T 22-04-2016 PP4_RS19065 2b1220fbe6f5775e14cbbcb72aa418a4 434 Pfam PF03600 Citrate transporter 14 378 2.9E-45 T 22-04-2016 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 PP4_RS19065 2b1220fbe6f5775e14cbbcb72aa418a4 434 PANTHER PTHR10283:SF87 7 433 1.5E-162 T 22-04-2016 IPR014738 Citrate transporter GO:0015137|GO:0015746 PP4_RS06165 2eb316496f67813bf13a9f8089d6c506 78 Pfam PF04325 Protein of unknown function (DUF465) 29 72 2.6E-10 T 22-04-2016 IPR007420 Protein of unknown function DUF465 PP4_RS08270 171c02805a2914943a822ee59c54abf7 115 Pfam PF05926 Phage head completion protein (GPL) 15 78 2.6E-9 T 22-04-2016 IPR009225 Bacteriophage head completion protein GpL GO:0019069 PP4_RS06425 1a64427e1b7e46115d3d407604829e01 59 Gene3D G3DSA:1.10.1470.10 4 58 6.7E-18 T 22-04-2016 IPR008462 CsbD-like PP4_RS06425 1a64427e1b7e46115d3d407604829e01 59 Pfam PF05532 CsbD-like 6 58 3.7E-19 T 22-04-2016 IPR008462 CsbD-like PP4_RS06425 1a64427e1b7e46115d3d407604829e01 59 SUPERFAMILY SSF69047 5 58 2.62E-14 T 22-04-2016 IPR008462 CsbD-like PP4_RS17230 19596dc2eb3402477ab53d4c099dda75 104 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 2 100 3.1E-23 T 22-04-2016 IPR008407 Branched-chain amino acid transport, AzlD PP4_RS17155 9299dd3d939b91d9a1a9b2c1941583cd 231 Pfam PF09836 Putative DNA-binding domain 8 93 1.3E-23 T 22-04-2016 IPR018640 Putative DNA-binding domain, bacteria PP4_RS16075 55879e70e8c67160c1b75ddf9ad5d88b 127 Pfam PF10686 Protein of unknown function (DUF2493) 1 66 5.7E-21 T 22-04-2016 IPR019627 Mycobacteriophage D29, Gp61 PP4_RS21460 d076af67bc2559bb5de313f482b55c4c 219 Pfam PF01203 Type II secretion system (T2SS), protein N 31 215 9.3E-7 T 22-04-2016 IPR022792 Type II secretion system, protein N PP4_RS04805 1486acfc5f63c070e6aff3a7f2242fa9 97 SUPERFAMILY SSF54909 4 86 6.9E-16 T 22-04-2016 IPR011008 Dimeric alpha-beta barrel PP4_RS04805 1486acfc5f63c070e6aff3a7f2242fa9 97 Gene3D G3DSA:3.30.70.900 4 96 4.1E-17 T 22-04-2016 PP4_RS04805 1486acfc5f63c070e6aff3a7f2242fa9 97 Pfam PF03992 Antibiotic biosynthesis monooxygenase 7 75 2.6E-11 T 22-04-2016 IPR007138 Antibiotic biosynthesis monooxygenase domain PP4_RS09540 61a792bbba63ccb812af7ad09d6b7ca9 80 Pfam PF07867 Protein of unknown function (DUF1654) 10 79 1.2E-33 T 22-04-2016 IPR012449 Bacteriophage F116, Orf28 PP4_RS19625 121c32e92e19e6a3e57a32a3125940e0 126 Gene3D G3DSA:2.60.40.1090 22 123 3.4E-7 T 22-04-2016 IPR000259 Fimbrial-type adhesion domain GO:0007155|GO:0009289 PP4_RS19625 121c32e92e19e6a3e57a32a3125940e0 126 SUPERFAMILY SSF49401 23 124 6.83E-6 T 22-04-2016 IPR008966 Adhesion domain PP4_RS15520 4d140983d1b488fa0eb3913109e80ac3 305 Pfam PF13557 Putative MetA-pathway of phenol degradation 65 286 6.8E-20 T 22-04-2016 IPR025737 MetA-pathway of phenol degradation, putative PP4_RS03885 54a0fa304b5b5063ca88225c9830ab6e 56 Pfam PF04964 Flp/Fap pilin component 11 56 4.7E-13 T 22-04-2016 IPR007047 Flp/Fap pilin component PP4_RS12005 0f08c68e0eb3a1cae5463cdcc7608476 254 Pfam PF03818 Malonate/sodium symporter MadM subunit 4 61 9.6E-28 T 22-04-2016 IPR018402 Malonate/sodium symporter MadM subunit, N-terminal PP4_RS12005 0f08c68e0eb3a1cae5463cdcc7608476 254 TIGRFAM TIGR00808 malonate_madM: malonate transporter, MadM subunit 1 254 1.7E-140 T 22-04-2016 IPR004691 Malonate/sodium symporter MadM subunit GO:0044668 PP4_RS23975 e98a242ab438c8b30ffdcf42856dcb1d 254 Pfam PF09849 Uncharacterized protein conserved in bacteria (DUF2076) 1 251 1.9E-69 T 22-04-2016 IPR018648 Protein of unknown function DUF2076 PP4_RS09785 185bce7d5522365caf144780fcdb496b 87 Pfam PF11275 Protein of unknown function (DUF3077) 9 82 1.0E-18 T 22-04-2016 IPR021427 Protein of unknown function DUF3077 PP4_RS14075 342ba3c1cf41ccc736d2f9e1eaeaa9f4 86 Pfam PF07865 Protein of unknown function (DUF1652) 9 74 8.4E-21 T 22-04-2016 IPR012448 Protein of unknown function DUF1652 PP4_RS04510 85f8221c56f096f7ab17cddd7e0d30bd 445 Pfam PF09375 Imelysin 66 422 6.0E-98 T 22-04-2016 PP4_RS17585 d9c50bb639525f58f5f6a1c9944d1598 835 PANTHER PTHR30287 8 835 7.6E-142 T 22-04-2016 PP4_RS17170 6364b6fb98e7f495af87acafb372fab6 186 Pfam PF13778 Domain of unknown function (DUF4174) 26 146 7.2E-20 T 22-04-2016 IPR025232 Domain of unknown function DUF4174 PP4_RS09355 770ea137cdd5c15053bdbc65cc51c36c 225 Pfam PF12261 Thermostable hemolysin 32 199 8.2E-62 T 22-04-2016 IPR022050 Thermostable hemolysin PP4_RS26420 ea0353c9505775ba1b5b09a9b0c9a85c 60 Pfam PF10055 Uncharacterized small protein (DUF2292) 17 52 2.0E-16 T 22-04-2016 IPR018743 Protein of unknown function DUF2292 PP4_RS25730 89ee92895f9e620aaf8f3984e7a09bea 84 Pfam PF04355 SmpA / OmlA family 21 46 2.7E-6 T 22-04-2016 IPR007450 Lipoprotein SmpA/OmlA GO:0019867 PP4_RS09530 895e606c99f252b8e7c48341f0a5bdcd 141 SUPERFAMILY SSF109604 2 130 1.79E-24 T 22-04-2016 PP4_RS02735 76ab34b01403a8ef95bb8897d87c849b 269 Gene3D G3DSA:1.10.260.40 18 58 2.1E-4 T 22-04-2016 IPR010982 Lambda repressor-like, DNA-binding domain GO:0003677 PP4_RS04095 b47306e8d4c785cb63c990d17141db48 378 PANTHER PTHR10587 162 362 3.2E-13 T 22-04-2016 PP4_RS04095 b47306e8d4c785cb63c990d17141db48 378 Gene3D G3DSA:3.20.20.370 174 372 6.1E-19 T 22-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 PP4_RS04095 b47306e8d4c785cb63c990d17141db48 378 PANTHER PTHR10587:SF70 162 362 3.2E-13 T 22-04-2016 PP4_RS04095 b47306e8d4c785cb63c990d17141db48 378 SUPERFAMILY SSF88713 153 372 3.5E-25 T 22-04-2016 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 PP4_RS04095 b47306e8d4c785cb63c990d17141db48 378 Pfam PF01522 Polysaccharide deacetylase 179 294 3.1E-6 T 22-04-2016 IPR002509 NodB homology domain GO:0005975|GO:0016810 PP4_RS27170 360b06acf4e1d9f6a7316765ff64973a 189 Pfam PF11736 Protein of unknown function (DUF3299) 36 182 8.2E-43 T 22-04-2016 IPR021727 Protein of unknown function DUF3299 PP4_RS21745 fd2a4fe46c2f3ab6f0350a167aae17e7 122 Pfam PF16703 Domain of unknown function (DUF5064) 3 121 9.5E-41 T 22-04-2016 IPR032024 Protein of unknown function DUF5064 PP4_RS14580 64deca8ccb40303addfa1192b83e8631 84 Pfam PF05488 PAAR motif 2 48 3.9E-14 T 22-04-2016 IPR008727 PAAR motif PP4_RS26245 cbc54ace7861ce0aeb5b99a7955688ff 248 Pfam PF05742 Transport and Golgi organisation 2 1 234 4.5E-60 T 22-04-2016 IPR008551 Transport and Golgi organisation protein 2 PP4_RS26245 cbc54ace7861ce0aeb5b99a7955688ff 248 PANTHER PTHR17985 2 236 9.2E-69 T 22-04-2016 IPR008551 Transport and Golgi organisation protein 2 PP4_RS27450 17524ef71269dd4cc209de3fd45dc5f4 221 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 26 103 2.3E-19 T 22-04-2016 IPR022385 Rhs repeat-associated core GO:0097264 PP4_RS17560 1f9948350b4a13023fa2ead4e7cf48f2 83 Pfam PF11839 Alanine-zipper, major outer membrane lipoprotein 3 83 1.1E-10 T 22-04-2016 IPR021793 Major outer membrane lipoprotein Oprl PP4_RS27500 019436ae9f45337a529e6d710fcf7ee5 310 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 65 142 5.7E-17 T 22-04-2016 IPR022385 Rhs repeat-associated core GO:0097264 PP4_RS08125 d90692bb534e64f33fd504bfba3cc578 264 Pfam PF16234 Domain of unknown function (DUF4892) 27 199 1.3E-74 T 22-04-2016 IPR032608 Protein of unknown function DUF4892 PP4_RS21430 07455cd9ab3868e1628b6104251e8c1a 155 Pfam PF02592 Putative vitamin uptake transporter 60 130 4.8E-6 T 22-04-2016 IPR003744 Protein of unknown function DUF165 PP4_RS03975 0b38c0f6d7374f86540944d3433a9864 66 Pfam PF07869 Protein of unknown function (DUF1656) 4 59 5.3E-20 T 22-04-2016 IPR012451 Protein of unknown function DUF1656 PP4_RS07730 8ff516575da894e2d1da748cab1fefbf 63 Pfam PF05545 Cbb3-type cytochrome oxidase component FixQ 5 45 8.9E-11 T 22-04-2016 IPR008621 Cbb3-type cytochrome oxidase component PP4_RS00160 8600119b1553ba7cebf8e295d4414d2d 107 Pfam PF10976 Protein of unknown function (DUF2790) 37 103 1.2E-20 T 22-04-2016 IPR021245 Protein of unknown function DUF2790 PP4_RS07750 4541693ce32210c99eed87f5eeb0c7bf 67 Pfam PF05545 Cbb3-type cytochrome oxidase component FixQ 6 47 3.7E-8 T 22-04-2016 IPR008621 Cbb3-type cytochrome oxidase component PP4_RS03925 b3b4bea0a9e3d018380afd9a3c7008ab 108 Pfam PF11804 Protein of unknown function (DUF3325) 4 101 6.0E-32 T 22-04-2016 IPR021762 Protein of unknown function DUF3325 PP4_RS03320 83dd43e347408428efcccf16fb7b7a94 211 Pfam PF13590 Domain of unknown function (DUF4136) 51 210 1.1E-19 T 22-04-2016 IPR025411 Domain of unknown function DUF4136 PP4_RS24200 116f2c07d924280e3365a18ef5f5f8a8 69 Pfam PF13438 Domain of unknown function (DUF4113) 11 58 7.8E-15 T 22-04-2016 IPR025188 Domain of unknown function DUF4113 PP4_RS24010 f1b3260a6781bcb919db8314002466c5 149 Pfam PF16473 3' exoribonuclease, RNase T-like 1 143 1.1E-8 T 22-04-2016 IPR033390 3'-5' exoribonuclease Rv2179c-like domain PP4_RS26895 d4b1648ff581a0827758d6e604578110 76 Pfam PF06568 Domain of unknown function (DUF1127) 33 66 5.7E-9 T 22-04-2016 IPR009506 Protein of unknown function DUF1127 PP4_RS00050 a322a5fa82694a522697bfddfa5d55b3 280 TIGRFAM TIGR04255 sporadTIGR04255: TIGR04255 family protein 8 277 2.6E-25 T 22-04-2016 IPR026349 Conserved hypothetical protein CHP04255 PP4_RS09170 497875a730a344eff4e15cf5007e97d1 81 Pfam PF13986 Domain of unknown function (DUF4224) 5 48 7.2E-18 T 22-04-2016 IPR025319 Domain of unknown function DUF4224 PP4_RS13265 fbf00d0a7ebc7d186e284b41edd856fc 162 Pfam PF11086 Protein of unknown function (DUF2878) 7 154 1.5E-38 T 22-04-2016 IPR021306 Protein of unknown function DUF2878 PP4_RS03625 a57fe0451817d4997be410ce30ab381a 51 Pfam PF10617 Protein of unknown function (DUF2474) 12 50 2.2E-19 T 22-04-2016 IPR018895 Protein of unknown function DUF2474 PP4_RS10125 40e6634352848c28de9c4724ffe4f7a0 101 Pfam PF04267 Sarcosine oxidase, delta subunit family 4 79 4.9E-27 T 22-04-2016 IPR006279 Sarcosine oxidase, delta subunit, heterotetrameric GO:0008115|GO:0046653 KEGG: 00260+1.5.3.1|MetaCyc: PWY-3661|MetaCyc: PWY-4722 PP4_RS23195 9835db4b95f6d15b1f4e8345fc1ac43f 318 Pfam PF01758 Sodium Bile acid symporter family 41 221 3.6E-16 T 22-04-2016 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 GO:0016020 PP4_RS07845 c1f814a87acde55456abdd2445ba7713 448 Pfam PF15604 Novel toxin 15 306 445 4.1E-29 T 22-04-2016 IPR028949 Novel toxin 15 PP4_RS20710 537bdefaf18a1093d7c1e1b6af3bd6f2 236 Pfam PF11306 Protein of unknown function (DUF3108) 10 221 9.0E-26 T 22-04-2016 IPR021457 Protein of unknown function DUF3108 PP4_RS18630 892489a940e4a684adb68c7e899f5d3e 190 Pfam PF10972 Peptidoglycan-binding protein, CsiV 56 174 1.8E-17 T 22-04-2016 IPR021241 Peptidoglycan-binding protein, CsiV PP4_RS08805 7a80942fe4a8eeb8498d3cf6beac6450 296 TIGRFAM TIGR03696 Rhs_assc_core: RHS repeat-associated core domain 68 143 4.0E-19 T 22-04-2016 IPR022385 Rhs repeat-associated core GO:0097264 PP4_RS24970 08bf2c2d6b52ebd1f282fc6571af8987 155 Pfam PF11066 Protein of unknown function (DUF2867) 11 151 4.9E-29 T 22-04-2016 IPR021295 Protein of unknown function DUF2867 PP4_RS09585 5b65c04e3317bc2ff8df0d0be30fd944 190 Pfam PF11354 Protein of unknown function (DUF3156) 41 187 5.8E-51 T 22-04-2016 IPR021500 Protein of unknown function DUF3156 PP4_RS25750 fcac38a7873322f572e9db08082c4832 134 Pfam PF03692 Putative zinc- or iron-chelating domain 25 125 1.8E-14 T 22-04-2016 IPR005358 Putative zinc- or iron-chelating domain containing protein PP4_RS12650 75e8f87e6a0e7f45afb1b1f25f654282 371 SUPERFAMILY SSF56935 223 368 7.66E-8 T 22-04-2016 PP4_RS02820 f17ea08f105914314306c6d0fe5fba6a 150 Pfam PF09619 Type III secretion system lipoprotein chaperone (YscW) 59 127 1.4E-5 T 22-04-2016 PP4_RS23940 76eff824db6a4dc717d6829d52011a0b 228 Gene3D G3DSA:3.40.50.1240 72 210 8.0E-15 T 22-04-2016 IPR029033 Histidine phosphatase superfamily PP4_RS23940 76eff824db6a4dc717d6829d52011a0b 228 SUPERFAMILY SSF53254 72 216 3.6E-15 T 22-04-2016 IPR029033 Histidine phosphatase superfamily PP4_RS06795 fd676edef8e39f511b6c273ce103c109 84 Pfam PF10976 Protein of unknown function (DUF2790) 8 82 6.1E-31 T 22-04-2016 IPR021245 Protein of unknown function DUF2790 PP4_RS03985 3af55c9805b6446253ff511f113fe48a 155 Pfam PF11663 Toxin with endonuclease activity, of toxin-antitoxin system 16 152 3.2E-60 T 22-04-2016 IPR021679 Toxin endonuclease, YhaV PP4_RS17280 411f0fc14abbb0aa733010878eed982f 71 Pfam PF11174 Protein of unknown function (DUF2970) 12 67 3.5E-23 T 22-04-2016 IPR021344 Protein of unknown function DUF2970 PP4_RS19750 5e58bff4b11e0bc4ed224d00073ada40 72 Pfam PF06568 Domain of unknown function (DUF1127) 27 57 4.5E-12 T 22-04-2016 IPR009506 Protein of unknown function DUF1127 PP4_RS21345 32b850779048da3356abf673c03962fc 93 Pfam PF12021 Protein of unknown function (DUF3509) 4 89 1.8E-29 T 22-04-2016 IPR021898 Protein of unknown function DUF3509 PP4_RS23295 712e468d0f1e1070f6fe5f4578e5a7e5 235 Pfam PF01891 Cobalt uptake substrate-specific transmembrane region 10 216 2.1E-15 T 22-04-2016 IPR002751 Cobalamin (vitamin B12) biosynthesis CbiM family GO:0000041|GO:0016021 UniPathway: UPA00148 PP4_RS20805 cb433128ea8d7def248df9f968ac650a 199 Pfam PF06930 Protein of unknown function (DUF1282) 8 179 3.0E-58 T 22-04-2016 IPR009698 Protein of unknown function DUF1282 PP4_RS12245 4f713b4f7fab61718615de4698f01938 171 Pfam PF11454 Protein of unknown function (DUF3016) 25 163 1.6E-40 T 22-04-2016 IPR021557 Protein of unknown function DUF3016 PP4_RS13250 c0e424a33108f9d403c53b90a10caca8 178 Pfam PF12915 Protein of unknown function (DUF3833) 11 172 4.1E-68 T 22-04-2016 IPR024409 Protein of unknown function DUF3833