locus-tag	class	description
DJ564_RS00010	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
DJ564_RS00015	COG0427	acetyl-CoA hydrolase
DJ564_RS00030	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
DJ564_RS00035	COG0251	oxidation-reduction process
DJ564_RS00040	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DJ564_RS00055	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DJ564_RS00065	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DJ564_RS00070	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
DJ564_RS00080	COG1012	belongs to the aldehyde dehydrogenase family
DJ564_RS00090	COG0267	Belongs to the bacterial ribosomal protein bL33 family
DJ564_RS00095	COG0227	Belongs to the bacterial ribosomal protein bL28 family
DJ564_RS00100	COG0747	negative chemotaxis
DJ564_RS00105	COG2003	Belongs to the UPF0758 family
DJ564_RS00110	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
DJ564_RS00115	COG0756	dUTP diphosphatase activity
DJ564_RS00120	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
DJ564_RS00125	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
DJ564_RS00135	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
DJ564_RS00140	COG0708	Exodeoxyribonuclease III
DJ564_RS00150	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
DJ564_RS00155	COG1561	YicC-like family, N-terminal region
DJ564_RS00160	COG0194	GDP metabolic process
DJ564_RS00165	COG1758	RNA polymerase activity
DJ564_RS00170	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
DJ564_RS00200	COG0848	biopolymer transport protein
DJ564_RS00210	COG0583	DNA-binding transcription factor activity
DJ564_RS00215	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
DJ564_RS00255	COG0515	serine threonine protein kinase
DJ564_RS00255	COG2815	serine threonine protein kinase
DJ564_RS00300	COG2204	response regulator
DJ564_RS00375	COG3161	chorismate lyase activity
DJ564_RS00380	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
DJ564_RS00400	COG1253	flavin adenine dinucleotide binding
DJ564_RS00410	COG0739	heme binding
DJ564_RS00420	COG0704	Plays a role in the regulation of phosphate uptake
DJ564_RS00425	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
DJ564_RS00430	COG0573	inorganic phosphate transmembrane transporter activity
DJ564_RS00445	COG0477	Major facilitator Superfamily
DJ564_RS00450	COG1607	acyl-coa hydrolase
DJ564_RS00480	COG0583	DNA-binding transcription factor activity
DJ564_RS00485	COG1027	Aspartate ammonia-lyase
DJ564_RS00490	COG1115	amino acid carrier protein
DJ564_RS00495	COG0252	asparaginase activity
DJ564_RS00550	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DJ564_RS00555	COG0765	amino acid transport
DJ564_RS00570	COG0511	ligase activity, forming carbon-carbon bonds
DJ564_RS00570	COG5016	pyruvate
DJ564_RS00575	COG0439	Biotin carboxylase
DJ564_RS00580	COG0583	DNA-binding transcription factor activity
DJ564_RS00600	COG0210	DNA helicase
DJ564_RS00615	COG4651	solute:proton antiporter activity
DJ564_RS00615	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
DJ564_RS00620	COG1607	acyl-coa hydrolase
DJ564_RS00635	COG0523	cobalamin synthesis protein
DJ564_RS00660	COG0860	N-Acetylmuramoyl-L-alanine amidase
DJ564_RS00665	COG1469	GTP cyclohydrolase I activity
DJ564_RS00670	COG1121	(ABC) transporter
DJ564_RS00680	COG0803	Belongs to the bacterial solute-binding protein 9 family
DJ564_RS00690	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
DJ564_RS00705	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
DJ564_RS00710	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
DJ564_RS00720	COG3220	belongs to the UPF0276 family
DJ564_RS00750	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DJ564_RS00755	COG1522	sequence-specific DNA binding
DJ564_RS00760	COG1280	lysine exporter protein (LysE YggA)
DJ564_RS00780	COG2226	methyltransferase
DJ564_RS00785	COG2755	lipolytic protein G-D-S-L family
DJ564_RS00785	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
DJ564_RS00830	COG0438	transferase activity, transferring glycosyl groups
DJ564_RS00845	COG1017	nitric oxide dioxygenase activity
DJ564_RS00845	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DJ564_RS00850	COG0625	glutathione transferase activity
DJ564_RS00855	COG0583	DNA-binding transcription factor activity
DJ564_RS00875	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
DJ564_RS00880	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
DJ564_RS00890	COG2358	TRAP transporter, solute receptor (TAXI family
DJ564_RS00920	COG0589	response to stress
DJ564_RS00925	COG0861	Integral membrane protein TerC family
DJ564_RS00940	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
DJ564_RS00945	COG1349	DNA-binding transcription factor activity
DJ564_RS00950	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
DJ564_RS00955	COG0355	proton-transporting ATP synthase activity, rotational mechanism
DJ564_RS00960	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
DJ564_RS00965	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
DJ564_RS00970	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
DJ564_RS00975	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
DJ564_RS00980	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
DJ564_RS00990	COG0356	it plays a direct role in the translocation of protons across the membrane
DJ564_RS00995	COG3312	ion transport
DJ564_RS01000	COG1475	DNA binding
DJ564_RS01005	COG1192	Involved in chromosome partitioning
DJ564_RS01010	COG0357	Ribosomal RNA small subunit methyltransferase G
DJ564_RS01015	COG0445	tRNA wobble uridine modification
DJ564_RS01025	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
DJ564_RS01030	COG0706	membrane insertase activity
DJ564_RS01035	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
DJ564_RS01040	COG0594	ribonuclease P activity
DJ564_RS01045	COG0230	Belongs to the bacterial ribosomal protein bL34 family
DJ564_RS01050	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
DJ564_RS01055	COG0592	DNA-directed DNA polymerase activity
DJ564_RS01060	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
DJ564_RS01065	COG0187	DNA topoisomerase II activity
DJ564_RS01080	COG0751	glycine-tRNA ligase activity
DJ564_RS01085	COG0752	glycyl-tRNA synthetase alpha subunit
DJ564_RS01090	COG2818	Glycosylase
DJ564_RS01110	COG0569	domain protein
DJ564_RS01115	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
DJ564_RS01120	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
DJ564_RS01125	COG0242	peptide deformylase activity
DJ564_RS01135	COG0758	DNA mediated transformation
DJ564_RS01140	COG0009	L-threonylcarbamoyladenylate synthase
DJ564_RS01150	COG0408	coproporphyrinogen oxidase activity
DJ564_RS01155	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
DJ564_RS01170	COG3119	arylsulfatase activity
DJ564_RS01175	COG0583	DNA-binding transcription factor activity
DJ564_RS01200	COG2851	Citrate transporter
DJ564_RS01205	COG0861	Integral membrane protein TerC family
DJ564_RS01215	COG1283	sodium-dependent phosphate transmembrane transporter activity
DJ564_RS01220	COG0612	Peptidase, M16
DJ564_RS01235	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
DJ564_RS01240	COG1127	ABC transporter
DJ564_RS01260	COG0700	Nucleoside recognition
DJ564_RS01265	COG1301	dicarboxylic acid transport
DJ564_RS01280	COG5487	UPF0391 membrane protein
DJ564_RS01290	COG2204	response regulator
DJ564_RS01295	COG5002	protein histidine kinase activity
DJ564_RS01300	COG4943	cyclic-guanylate-specific phosphodiesterase activity
DJ564_RS01305	COG3023	N-Acetylmuramoyl-L-alanine amidase
DJ564_RS01320	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
DJ564_RS01335	COG0218	Necessary for normal cell division and for the maintenance of normal septation
DJ564_RS01355	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
DJ564_RS01360	COG0735	belongs to the Fur family
DJ564_RS01365	COG1121	(ABC) transporter
DJ564_RS01370	COG1108	ABC-type Mn2 Zn2 transport systems permease components
DJ564_RS01390	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
DJ564_RS01395	COG2011	ABC-type metal ion transport system permease component
DJ564_RS01400	COG1464	Belongs to the NlpA lipoprotein family
DJ564_RS01410	COG0109	protoheme IX farnesyltransferase activity
DJ564_RS01425	COG3346	SURF1 family
DJ564_RS01440	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
DJ564_RS01445	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
DJ564_RS01450	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
DJ564_RS01465	COG0659	secondary active sulfate transmembrane transporter activity
DJ564_RS01490	COG0339	signal peptide processing
DJ564_RS01495	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
DJ564_RS01500	COG0339	signal peptide processing
DJ564_RS01505	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
DJ564_RS01535	COG1764	response to oxidative stress
DJ564_RS01540	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
DJ564_RS01550	COG3360	Dodecin
DJ564_RS01565	COG0133	tryptophan synthase activity
DJ564_RS01570	COG0159	tryptophan synthase activity
DJ564_RS01610	COG0427	acetyl-CoA hydrolase
DJ564_RS01630	COG0583	DNA-binding transcription factor activity
DJ564_RS01635	COG1960	acyl-CoA dehydrogenase activity
DJ564_RS01685	COG0840	transmembrane signaling receptor activity
DJ564_RS01710	COG1802	Transcriptional regulator
DJ564_RS01720	COG3300	MHYT domain
DJ564_RS01720	COG5001	Diguanylate cyclase
DJ564_RS01735	COG1538	Outer membrane efflux protein
DJ564_RS01740	COG2274	protein secretion by the type I secretion system
DJ564_RS01745	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DJ564_RS01750	COG2175	clavaminate synthase activity
DJ564_RS01760	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
DJ564_RS01765	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DJ564_RS01800	COG0330	HflC and HflK could
DJ564_RS01825	COG2026	Addiction module toxin, RelE StbE family
DJ564_RS01840	COG1289	transmembrane transporter activity
DJ564_RS01850	COG1566	PFAM secretion protein HlyD family protein
DJ564_RS01865	COG5339	Protein conserved in bacteria
DJ564_RS01870	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
DJ564_RS01880	COG2304	oxidoreductase activity
DJ564_RS01885	COG1595	DNA-templated transcription, initiation
DJ564_RS01905	COG1012	belongs to the aldehyde dehydrogenase family
DJ564_RS01910	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
DJ564_RS01920	COG2199	diguanylate cyclase activity
DJ564_RS01940	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
DJ564_RS01950	COG4208	sulfate ABC transporter
DJ564_RS01955	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
DJ564_RS02015	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
DJ564_RS02030	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
DJ564_RS02045	COG2011	ABC-type metal ion transport system permease component
DJ564_RS02050	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
DJ564_RS02055	COG1464	Belongs to the NlpA lipoprotein family
DJ564_RS02080	COG1126	abc transporter atp-binding protein
DJ564_RS02085	COG0765	amino acid transport
DJ564_RS02090	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DJ564_RS02100	COG1045	serine acetyltransferase
DJ564_RS02110	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
DJ564_RS02135	COG0667	Aldo Keto reductase
DJ564_RS02140	COG2175	clavaminate synthase activity
DJ564_RS02145	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DJ564_RS02150	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
DJ564_RS02155	COG4521	taurine ABC transporter
DJ564_RS02160	COG2918	glutathione biosynthetic process
DJ564_RS02170	COG2183	response to ionizing radiation
DJ564_RS02185	COG0189	ligase activity
DJ564_RS02190	COG4067	protein conserved in archaea
DJ564_RS02190	COG0189	ligase activity
DJ564_RS02195	COG2199	diguanylate cyclase activity
DJ564_RS02195	COG3287	FIST C domain
DJ564_RS02195	COG2200	EAL domain
DJ564_RS02200	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
DJ564_RS02210	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
DJ564_RS02215	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
DJ564_RS02260	COG0514	ATP-dependent DNA helicase (RecQ)
DJ564_RS02265	COG1024	Enoyl-CoA hydratase
DJ564_RS02265	COG1250	3-hydroxyacyl-CoA dehydrogenase
DJ564_RS02285	COG0243	molybdopterin cofactor binding
DJ564_RS02290	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
DJ564_RS02295	COG0583	DNA-binding transcription factor activity
DJ564_RS02300	COG1652	LysM domain
DJ564_RS02305	COG1011	Hydrolase
DJ564_RS02310	COG0494	nUDIX hydrolase
DJ564_RS02350	COG1088	dTDP-glucose 4,6-dehydratase activity
DJ564_RS02355	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
DJ564_RS02365	COG2957	Belongs to the agmatine deiminase family
DJ564_RS02415	COG4737	Cytotoxic translational repressor of toxin-antitoxin stability system
DJ564_RS02430	COG3395	kinase activity
DJ564_RS02435	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
DJ564_RS02440	COG1349	DNA-binding transcription factor activity
DJ564_RS02460	COG1942	4-Oxalocrotonate Tautomerase
DJ564_RS02470	COG1028	Short-chain dehydrogenase reductase Sdr
DJ564_RS02475	COG0300	oxidoreductase activity
DJ564_RS02545	COG4804	nuclease activity
DJ564_RS02565	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
DJ564_RS02570	COG1194	a g-specific adenine glycosylase
DJ564_RS02585	COG2223	nitrite transmembrane transporter activity
DJ564_RS02590	COG0131	Imidazoleglycerol-phosphate dehydratase
DJ564_RS02595	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
DJ564_RS02605	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
DJ564_RS02610	COG0107	imidazoleglycerol-phosphate synthase activity
DJ564_RS02625	COG2861	carbohydrate metabolic process
DJ564_RS02630	COG0793	Belongs to the peptidase S41A family
DJ564_RS02635	COG4942	peptidase
DJ564_RS02640	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
DJ564_RS02655	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
DJ564_RS02675	COG3852	Histidine kinase
DJ564_RS02700	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
DJ564_RS02700	COG0301	tRNA thio-modification
DJ564_RS02705	COG1217	gtp-binding protein TYPA
DJ564_RS02715	COG0058	SHG alpha-glucan phosphorylase activity
DJ564_RS02730	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
DJ564_RS02750	COG3040	lipid binding
DJ564_RS02755	COG0402	S-adenosylhomocysteine deaminase activity
DJ564_RS02760	COG2188	Transcriptional regulator
DJ564_RS02770	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
DJ564_RS02775	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
DJ564_RS02785	COG4176	ABC-type proline glycine betaine transport system permease component
DJ564_RS02790	COG0517	IMP dehydrogenase activity
DJ564_RS02790	COG4175	Glycine betaine
DJ564_RS02795	COG2986	histidine ammonia-lyase
DJ564_RS02800	COG2986	histidine ammonia-lyase
DJ564_RS02805	COG1228	amidohydrolase
DJ564_RS02820	COG0657	acetylesterase activity
DJ564_RS02825	COG0596	Alpha beta hydrolase
DJ564_RS02830	COG1490	D-aminoacyl-tRNA deacylase activity
DJ564_RS02835	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
DJ564_RS02840	COG2943	transferase activity, transferring hexosyl groups
DJ564_RS02850	COG0765	amino acid transport
DJ564_RS02860	COG0840	transmembrane signaling receptor activity
DJ564_RS02875	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
DJ564_RS02880	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
DJ564_RS02885	COG0140	phosphoribosyl-ATP diphosphatase activity
DJ564_RS02890	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
DJ564_RS02895	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
DJ564_RS02905	COG2226	methyltransferase
DJ564_RS02925	COG1309	transcriptional regulator
DJ564_RS02960	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
DJ564_RS02965	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
DJ564_RS02980	COG0018	arginyl-trna synthetase
DJ564_RS02985	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
DJ564_RS02990	COG0254	rRNA binding
DJ564_RS03000	COG0281	malic enzyme
DJ564_RS03035	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
DJ564_RS03040	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
DJ564_RS03055	COG0070	glutamate synthase
DJ564_RS03055	COG0069	glutamate synthase activity
DJ564_RS03055	COG0067	glutamate synthase
DJ564_RS03060	COG0493	'glutamate synthase
DJ564_RS03065	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
DJ564_RS03070	COG2814	Major facilitator Superfamily
DJ564_RS03075	COG0583	DNA-binding transcription factor activity
DJ564_RS03120	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
DJ564_RS03125	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
DJ564_RS03130	COG1028	Short-chain dehydrogenase reductase Sdr
DJ564_RS03140	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
DJ564_RS03175	COG2986	histidine ammonia-lyase
DJ564_RS03200	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
DJ564_RS03205	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
DJ564_RS03220	COG1192	Involved in chromosome partitioning
DJ564_RS03225	COG3118	belongs to the thioredoxin family
DJ564_RS03240	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
DJ564_RS03245	COG3264	Mechanosensitive ion channel
DJ564_RS03245	COG1196	nuclear chromosome segregation
DJ564_RS03250	COG3263	regulation of cellular component size
DJ564_RS03270	COG0840	transmembrane signaling receptor activity
DJ564_RS03275	COG1960	acyl-CoA dehydrogenase activity
DJ564_RS03280	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
DJ564_RS03280	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
DJ564_RS03280	COG0506	proline dehydrogenase activity
DJ564_RS03285	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
DJ564_RS03305	COG3209	COG3209 Rhs family protein
DJ564_RS03305	COG3209	COG3209 Rhs family protein
DJ564_RS03325	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
DJ564_RS03330	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
DJ564_RS03355	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
DJ564_RS03365	COG0859	PFAM glycosyl transferase family 9
DJ564_RS03370	COG0859	PFAM glycosyl transferase family 9
DJ564_RS03375	COG0438	transferase activity, transferring glycosyl groups
DJ564_RS03405	COG2192	nodulation
DJ564_RS03410	COG0438	transferase activity, transferring glycosyl groups
DJ564_RS03435	COG1215	transferase activity, transferring glycosyl groups
DJ564_RS03450	COG1132	(ABC) transporter
DJ564_RS03455	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
DJ564_RS03455	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
DJ564_RS03485	COG1519	Transferase
DJ564_RS03490	COG1538	Outer membrane efflux protein
DJ564_RS03495	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
DJ564_RS03510	COG0494	nUDIX hydrolase
DJ564_RS03525	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
DJ564_RS03540	COG3150	esterase
DJ564_RS03555	COG3577	Aspartyl protease
DJ564_RS03575	COG3830	Belongs to the UPF0237 family
DJ564_RS03575	COG0560	Phosphoserine phosphatase
DJ564_RS03590	COG0688	phosphatidylethanolamine metabolic process
DJ564_RS03635	COG1162	GTPase activity
DJ564_RS03640	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
DJ564_RS03645	COG2860	membrane
DJ564_RS03655	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
DJ564_RS03655	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
DJ564_RS03660	COG0802	atpase or kinase
DJ564_RS03665	COG0860	N-Acetylmuramoyl-L-alanine amidase
DJ564_RS03670	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
DJ564_RS03675	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
DJ564_RS03680	COG1923	regulation of RNA biosynthetic process
DJ564_RS03685	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
DJ564_RS03690	COG0330	HflC and HflK could
DJ564_RS03695	COG0330	HflC and HflK could
DJ564_RS03700	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
DJ564_RS03705	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
DJ564_RS03715	COG1178	ABC-type Fe3 transport system permease component
DJ564_RS03735	COG0557	exoribonuclease II activity
DJ564_RS03740	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
DJ564_RS03745	COG0360	Binds together with S18 to 16S ribosomal RNA
DJ564_RS03750	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
DJ564_RS03760	COG0359	binds to the 23S rRNA
DJ564_RS03765	COG0305	Participates in initiation and elongation during chromosome replication
DJ564_RS03770	COG1032	radical SAM domain protein
DJ564_RS03780	COG2308	Evidence 4 Homologs of previously reported genes of
DJ564_RS03780	COG2307	Protein conserved in bacteria
DJ564_RS03805	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
DJ564_RS03810	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
DJ564_RS03820	COG1115	amino acid carrier protein
DJ564_RS03830	COG0583	DNA-binding transcription factor activity
DJ564_RS03835	COG1012	belongs to the aldehyde dehydrogenase family
DJ564_RS03840	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DJ564_RS03875	COG4221	oxidoreductase activity
DJ564_RS03880	COG2942	2-epimerase
DJ564_RS03890	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
DJ564_RS03895	COG0830	nickel cation binding
DJ564_RS03900	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
DJ564_RS03915	COG2982	Protein involved in outer membrane biogenesis
DJ564_RS03925	COG0583	DNA-binding transcription factor activity
DJ564_RS03930	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
DJ564_RS03940	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
DJ564_RS03945	COG0697	spore germination
DJ564_RS03965	COG0443	Heat shock 70 kDa protein
DJ564_RS03970	COG0484	heat shock protein binding
DJ564_RS03975	COG0789	Transcriptional regulator
DJ564_RS03990	COG0804	urea catabolic process
DJ564_RS03995	COG0832	Belongs to the urease beta subunit family
DJ564_RS04010	COG0831	urea catabolic process
DJ564_RS04015	COG0829	nickel cation binding
DJ564_RS04030	COG0411	ABC transporter
DJ564_RS04045	COG0683	leucine binding
DJ564_RS04060	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DJ564_RS04100	COG3636	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
DJ564_RS04105	COG3657	addiction module killer protein
DJ564_RS04115	COG1903	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A
DJ564_RS04165	COG2095	MarC family integral membrane protein
DJ564_RS04175	COG0151	Belongs to the GarS family
DJ564_RS04180	COG0138	bifunctional purine biosynthesis protein purh
DJ564_RS04190	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
DJ564_RS04200	COG2264	protein methyltransferase activity
DJ564_RS04250	COG0023	Translation Initiation Factor
DJ564_RS04255	COG1166	arginine decarboxylase activity
DJ564_RS04270	COG0534	Mate efflux family protein
DJ564_RS04290	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
DJ564_RS04305	COG2030	dehydratase
DJ564_RS04310	COG1028	Short-chain dehydrogenase reductase Sdr
DJ564_RS04325	COG2207	Transcriptional regulator
DJ564_RS04330	COG0840	transmembrane signaling receptor activity
DJ564_RS04345	COG2217	Heavy metal translocating P-type atpase
DJ564_RS04365	COG0604	alcohol dehydrogenase
DJ564_RS04375	COG0583	DNA-binding transcription factor activity
DJ564_RS04385	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
DJ564_RS04405	COG0387	Pfam Sodium calcium exchanger
DJ564_RS04440	COG1079	Belongs to the binding-protein-dependent transport system permease family
DJ564_RS04445	COG4603	Belongs to the binding-protein-dependent transport system permease family
DJ564_RS04450	COG3845	ABC transporter
DJ564_RS04455	COG1739	Uncharacterized protein family UPF0029
DJ564_RS04460	COG1309	transcriptional regulator
DJ564_RS04510	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
DJ564_RS04515	COG1074	ATP-dependent DNA helicase activity
DJ564_RS04520	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
DJ564_RS04530	COG2199	diguanylate cyclase activity
DJ564_RS04560	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
DJ564_RS04565	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
DJ564_RS04575	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
DJ564_RS04590	COG1028	Short-chain dehydrogenase reductase Sdr
DJ564_RS04620	COG2249	NAD(P)H dehydrogenase (quinone) activity
DJ564_RS04625	COG0583	DNA-binding transcription factor activity
DJ564_RS04640	COG2249	NAD(P)H dehydrogenase (quinone) activity
DJ564_RS04645	COG0583	DNA-binding transcription factor activity
DJ564_RS04655	COG0659	secondary active sulfate transmembrane transporter activity
DJ564_RS04660	COG2610	gluconate transmembrane transporter activity
DJ564_RS04670	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
DJ564_RS04685	COG1487	ribonuclease activity
DJ564_RS04690	COG0840	transmembrane signaling receptor activity
DJ564_RS04715	COG5002	protein histidine kinase activity
DJ564_RS04720	COG0467	Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction
DJ564_RS04775	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DJ564_RS04780	COG2342	PFAM TM1410 hypothetical-related protein
DJ564_RS04805	COG0438	transferase activity, transferring glycosyl groups
DJ564_RS04820	COG1764	response to oxidative stress
DJ564_RS04865	COG0247	lactate metabolic process
DJ564_RS04870	COG1620	l-lactate permease
DJ564_RS04880	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
DJ564_RS04885	COG0733	neurotransmitter:sodium symporter activity
DJ564_RS04895	COG2914	Belongs to the UPF0125 (RnfH) family
DJ564_RS04900	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
DJ564_RS04905	COG0735	belongs to the Fur family
DJ564_RS04910	COG0497	DNA recombination
DJ564_RS04920	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
DJ564_RS04925	COG0443	Heat shock 70 kDa protein
DJ564_RS04930	COG0484	heat shock protein binding
DJ564_RS04935	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
DJ564_RS04940	COG0505	Belongs to the CarA family
DJ564_RS04945	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
DJ564_RS04950	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
DJ564_RS04965	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
DJ564_RS04970	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
DJ564_RS04975	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
DJ564_RS04980	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
DJ564_RS04985	COG0149	triose-phosphate isomerase activity
DJ564_RS04990	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
DJ564_RS05005	COG0779	Required for maturation of 30S ribosomal subunits
DJ564_RS05010	COG0195	Participates in both transcription termination and antitermination
DJ564_RS05015	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
DJ564_RS05020	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
DJ564_RS05025	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
DJ564_RS05030	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
DJ564_RS05035	COG1185	polyribonucleotide nucleotidyltransferase activity
DJ564_RS05075	COG0840	transmembrane signaling receptor activity
DJ564_RS05080	COG0084	hydrolase, TatD family'
DJ564_RS05085	COG1609	Transcriptional regulator
DJ564_RS05095	COG1105	Belongs to the carbohydrate kinase PfkB family
DJ564_RS05100	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DJ564_RS05100	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
DJ564_RS05100	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
DJ564_RS05125	COG4774	siderophore transport
DJ564_RS05130	COG3128	pkhd-type hydroxylase
DJ564_RS05150	COG0019	diaminopimelate decarboxylase activity
DJ564_RS05180	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
DJ564_RS05190	COG4608	Belongs to the ABC transporter superfamily
DJ564_RS05195	COG0444	Belongs to the ABC transporter superfamily
DJ564_RS05200	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DJ564_RS05205	COG0601	transmembrane transport
DJ564_RS05210	COG0747	negative chemotaxis
DJ564_RS05220	COG0747	negative chemotaxis
DJ564_RS05225	COG0747	negative chemotaxis
DJ564_RS05285	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
DJ564_RS05290	COG4178	(ABC) transporter
DJ564_RS05310	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
DJ564_RS05320	COG2271	Major facilitator Superfamily
DJ564_RS05325	COG2721	sulfolactate sulfo-lyase activity
DJ564_RS05335	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
DJ564_RS05345	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
DJ564_RS05350	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
DJ564_RS05355	COG0154	amidase activity
DJ564_RS05360	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
DJ564_RS05365	COG1077	Cell shape determining protein MreB Mrl
DJ564_RS05370	COG1792	Involved in formation and maintenance of cell shape
DJ564_RS05380	COG0424	maF-like protein
DJ564_RS05385	COG1530	ribonuclease E activity
DJ564_RS05395	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DJ564_RS05400	COG0312	modulator of DNA gyrase
DJ564_RS05405	COG3028	Belongs to the UPF0307 family
DJ564_RS05410	COG0312	modulator of DNA gyrase
DJ564_RS05445	COG1660	Displays ATPase and GTPase activities
DJ564_RS05455	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
DJ564_RS05460	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
DJ564_RS05465	COG1137	ATPase activity
DJ564_RS05470	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
DJ564_RS05480	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
DJ564_RS05490	COG1127	ABC transporter
DJ564_RS05495	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
DJ564_RS05500	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
DJ564_RS05520	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
DJ564_RS05525	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
DJ564_RS05530	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
DJ564_RS05535	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
DJ564_RS05550	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DJ564_RS05565	COG0175	sulfate reduction
DJ564_RS05575	COG0204	Acyl-transferase
DJ564_RS05580	COG0280	phosphate acetyltransferase
DJ564_RS05580	COG0857	belongs to the CobB CobQ family
DJ564_RS05595	COG0386	Belongs to the glutathione peroxidase family
DJ564_RS05610	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
DJ564_RS05620	COG0492	ferredoxin-NADP+ reductase activity
DJ564_RS05630	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
DJ564_RS05645	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
DJ564_RS05650	COG0302	gtp cyclohydrolase
DJ564_RS05665	COG0789	Transcriptional regulator
DJ564_RS05675	COG1366	Belongs to the anti-sigma-factor antagonist family
DJ564_RS05685	COG0583	DNA-binding transcription factor activity
DJ564_RS05690	COG1380	Effector of murein hydrolase LrgA
DJ564_RS05695	COG1346	cytolysis
DJ564_RS05705	COG0596	Alpha beta hydrolase
DJ564_RS05710	COG1028	Short-chain dehydrogenase reductase Sdr
DJ564_RS05735	COG2197	response regulator
DJ564_RS05750	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
DJ564_RS05755	COG0179	Fumarylacetoacetate (FAA) hydrolase
DJ564_RS05790	COG0814	amino acid
DJ564_RS05795	COG1760	l-serine dehydratase
DJ564_RS05800	COG0583	DNA-binding transcription factor activity
DJ564_RS05810	COG4772	TonB-dependent receptor
DJ564_RS05815	COG3712	iron ion homeostasis
DJ564_RS05820	COG1595	DNA-templated transcription, initiation
DJ564_RS05850	COG4774	siderophore transport
DJ564_RS05860	COG0697	spore germination
DJ564_RS05870	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
DJ564_RS05895	COG0583	DNA-binding transcription factor activity
DJ564_RS05915	COG1566	PFAM secretion protein HlyD family protein
DJ564_RS05930	COG0300	oxidoreductase activity
DJ564_RS05945	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
DJ564_RS05945	COG0662	Cupin 2, conserved barrel domain protein
DJ564_RS05960	COG1696	Membrane protein involved in D-alanine export
DJ564_RS05975	COG3420	alginic acid biosynthetic process
DJ564_RS05985	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
DJ564_RS05990	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DJ564_RS05995	COG1215	transferase activity, transferring glycosyl groups
DJ564_RS06005	COG3022	response to hydroperoxide
DJ564_RS06020	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
DJ564_RS06025	COG0315	cyclic pyranopterin monophosphate synthase activity
DJ564_RS06030	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
DJ564_RS06040	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DJ564_RS06060	COG0513	Belongs to the DEAD box helicase family
DJ564_RS06065	COG0400	carboxylic ester hydrolase activity
DJ564_RS06070	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DJ564_RS06075	COG4597	amino acid ABC transporter
DJ564_RS06080	COG0765	amino acid transport
DJ564_RS06085	COG1126	abc transporter atp-binding protein
DJ564_RS06090	COG1404	Belongs to the peptidase S8 family
DJ564_RS06090	COG4935	Belongs to the peptidase S8 family
DJ564_RS06095	COG2186	Transcriptional regulator
DJ564_RS06100	COG2807	transmembrane transport
DJ564_RS06105	COG3539	Fimbrial protein
DJ564_RS06125	COG3539	Fimbrial protein
DJ564_RS06130	COG3188	usher protein
DJ564_RS06135	COG3121	Chaperone
DJ564_RS06150	COG2197	response regulator
DJ564_RS06160	COG2827	Endonuclease containing a URI domain
DJ564_RS06175	COG3081	Nucleoid-associated protein
DJ564_RS06185	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
DJ564_RS06205	COG0525	valine-tRNA ligase activity
DJ564_RS06225	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
DJ564_RS06230	COG0795	lipopolysaccharide-transporting ATPase activity
DJ564_RS06235	COG0795	lipopolysaccharide-transporting ATPase activity
DJ564_RS06240	COG0481	GTPase activity
DJ564_RS06245	COG0681	Belongs to the peptidase S26 family
DJ564_RS06250	COG0571	ribonuclease III activity
DJ564_RS06255	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
DJ564_RS06265	COG1381	Involved in DNA repair and RecF pathway recombination
DJ564_RS06270	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
DJ564_RS06280	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
DJ564_RS06285	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
DJ564_RS06285	COG0047	phosphoribosylformylglycinamidine synthase activity
DJ564_RS06290	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
DJ564_RS06295	COG1263	PTS System
DJ564_RS06295	COG2190	(PTS) system
DJ564_RS06295	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DJ564_RS06300	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
DJ564_RS06300	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
DJ564_RS06305	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
DJ564_RS06310	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
DJ564_RS06315	COG2188	Transcriptional regulator
DJ564_RS06330	COG0494	nUDIX hydrolase
DJ564_RS06350	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
DJ564_RS06355	COG0477	Major facilitator Superfamily
DJ564_RS06360	COG4536	flavin adenine dinucleotide binding
DJ564_RS06370	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
DJ564_RS06375	COG0228	four-way junction DNA binding
DJ564_RS06380	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
DJ564_RS06385	COG0336	Belongs to the RNA methyltransferase TrmD family
DJ564_RS06390	COG0335	large ribosomal subunit rRNA binding
DJ564_RS06395	COG4974	Belongs to the 'phage' integrase family
DJ564_RS06415	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DJ564_RS06415	COG2205	protein histidine kinase activity
DJ564_RS06430	COG1804	L-carnitine dehydratase bile acid-inducible protein F
DJ564_RS06445	COG1902	pentaerythritol trinitrate reductase activity
DJ564_RS06450	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
DJ564_RS06475	COG1012	belongs to the aldehyde dehydrogenase family
DJ564_RS06480	COG1177	transmembrane transport
DJ564_RS06485	COG1176	ABC-type spermidine putrescine transport system, permease component I
DJ564_RS06490	COG3842	ATPase activity
DJ564_RS06495	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
DJ564_RS06505	COG0583	DNA-binding transcription factor activity
DJ564_RS06525	COG0457	Tetratricopeptide repeat
DJ564_RS06525	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
DJ564_RS06540	COG2201	protein-glutamate methylesterase activity
DJ564_RS06545	COG5001	Diguanylate cyclase
DJ564_RS06545	COG4251	negative regulation of phosphorylation
DJ564_RS06545	COG3706	GGDEF domain
DJ564_RS06545	COG2203	Gaf domain
DJ564_RS06555	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
DJ564_RS06580	COG1073	alpha beta
DJ564_RS06595	COG2885	chlorophyll binding
DJ564_RS06615	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
DJ564_RS06620	COG0563	adenylate kinase activity
DJ564_RS06635	COG1801	Protein of unknown function DUF72
DJ564_RS06655	COG0742	ribosomal rna small subunit methyltransferase
DJ564_RS06665	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DJ564_RS06670	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
DJ564_RS06705	COG2937	Belongs to the GPAT DAPAT family
DJ564_RS06725	COG2226	methyltransferase
DJ564_RS06730	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
DJ564_RS06740	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
DJ564_RS06745	COG2166	iron-sulfur cluster assembly
DJ564_RS06750	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
DJ564_RS06755	COG2171	N-acyltransferase activity
DJ564_RS06760	COG1393	Belongs to the ArsC family
DJ564_RS06775	COG0436	Aminotransferase
DJ564_RS06780	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
DJ564_RS06785	COG0024	Methionine aminopeptidase
DJ564_RS06790	COG0052	Belongs to the universal ribosomal protein uS2 family
DJ564_RS06795	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
DJ564_RS06800	COG0528	UMP kinase activity
DJ564_RS06805	COG0233	cytoplasmic translational termination
DJ564_RS06810	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
DJ564_RS06820	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
DJ564_RS06840	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
DJ564_RS06845	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
DJ564_RS06850	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
DJ564_RS06855	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
DJ564_RS06860	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
DJ564_RS06865	COG0587	DNA-directed DNA polymerase activity
DJ564_RS06870	COG0825	malonyl-CoA metabolic process
DJ564_RS06875	COG0037	tRNA processing
DJ564_RS06880	COG0504	CTP synthase activity
DJ564_RS06885	COG2877	3-deoxy-8-phosphooctulonate synthase activity
DJ564_RS06890	COG0148	phosphopyruvate hydratase activity
DJ564_RS06900	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
DJ564_RS06910	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
DJ564_RS06915	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
DJ564_RS06920	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
DJ564_RS06925	COG0585	pseudouridine synthase activity
DJ564_RS06930	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
DJ564_RS06935	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
DJ564_RS06950	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
DJ564_RS06955	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
DJ564_RS06980	COG4386	tail sheath protein
DJ564_RS07020	COG4381	Mu-like prophage protein gp46
DJ564_RS07055	COG3179	chitinase
DJ564_RS07065	COG1546	Belongs to the CinA family
DJ564_RS07070	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
DJ564_RS07075	COG2137	regulation of response to DNA damage stimulus
DJ564_RS07095	COG3148	PFAM DTW domain containing protein
DJ564_RS07110	COG0583	DNA-binding transcription factor activity
DJ564_RS07130	COG4807	Protein conserved in bacteria
DJ564_RS07135	COG1187	pseudouridine synthase activity
DJ564_RS07145	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
DJ564_RS07150	COG3158	transport of potassium into the cell
DJ564_RS07185	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
DJ564_RS07195	COG0442	prolyl-tRNA aminoacylation
DJ564_RS07200	COG2211	Major facilitator Superfamily
DJ564_RS07220	COG1278	Cold shock
DJ564_RS07225	COG0717	Belongs to the dCTP deaminase family
DJ564_RS07240	COG1201	RNA secondary structure unwinding
DJ564_RS07245	COG4598	ABC transporter
DJ564_RS07265	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DJ564_RS07270	COG1793	dna ligase
DJ564_RS07280	COG2366	antibiotic biosynthetic process
DJ564_RS07290	COG1335	isochorismatase
DJ564_RS07295	COG0653	protein targeting
DJ564_RS07305	COG3012	SEC-C Motif Domain Protein
DJ564_RS07340	COG1199	ATP-dependent helicase activity
DJ564_RS07350	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
DJ564_RS07355	COG2885	chlorophyll binding
DJ564_RS07360	COG0259	pyridoxamine-phosphate oxidase activity
DJ564_RS07390	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
DJ564_RS07405	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
DJ564_RS07415	COG1028	Short-chain dehydrogenase reductase Sdr
DJ564_RS07420	COG0583	DNA-binding transcription factor activity
DJ564_RS07435	COG3220	belongs to the UPF0276 family
DJ564_RS07480	COG2084	Dehydrogenase
DJ564_RS07495	COG2271	Major facilitator Superfamily
DJ564_RS07500	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
DJ564_RS07510	COG0306	phosphate transporter
DJ564_RS07520	COG1414	Transcriptional regulator
DJ564_RS07525	COG2814	Major facilitator Superfamily
DJ564_RS07530	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
DJ564_RS07535	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
DJ564_RS07540	COG0183	Belongs to the thiolase family
DJ564_RS07545	COG3485	protocatechuate 3,4-dioxygenase
DJ564_RS07550	COG3485	protocatechuate 3,4-dioxygenase
DJ564_RS07555	COG0477	Major facilitator Superfamily
DJ564_RS07565	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
DJ564_RS07570	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
DJ564_RS07595	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DJ564_RS07600	COG1309	transcriptional regulator
DJ564_RS07610	COG1902	pentaerythritol trinitrate reductase activity
DJ564_RS07615	COG2814	Major facilitator Superfamily
DJ564_RS07660	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
DJ564_RS07675	COG1704	LemA family
DJ564_RS07680	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
DJ564_RS07695	COG0697	spore germination
DJ564_RS07700	COG0693	protein deglycase activity
DJ564_RS07710	COG3422	double-strand break repair
DJ564_RS07715	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
DJ564_RS07720	COG0235	Class ii aldolase
DJ564_RS07725	COG1396	sequence-specific DNA binding
DJ564_RS07735	COG1454	alcohol dehydrogenase
DJ564_RS07740	COG0477	Major facilitator Superfamily
DJ564_RS07755	COG1804	L-carnitine dehydratase bile acid-inducible protein F
DJ564_RS07760	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
DJ564_RS07770	COG2271	Major facilitator Superfamily
DJ564_RS07830	COG4106	trans-aconitate 2-methyltransferase activity
DJ564_RS07885	COG2267	carboxylic ester hydrolase activity
DJ564_RS07910	COG0439	Biotin carboxylase
DJ564_RS07920	COG3665	Urea carboxylase-associated protein
DJ564_RS07965	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
DJ564_RS07970	COG3180	Ammonia monooxygenase
DJ564_RS08010	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
DJ564_RS08040	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
DJ564_RS08050	COG0425	Belongs to the sulfur carrier protein TusA family
DJ564_RS08060	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
DJ564_RS08075	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
DJ564_RS08080	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
DJ564_RS08085	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
DJ564_RS08090	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
DJ564_RS08135	COG0446	pyridine nucleotide-disulphide oxidoreductase
DJ564_RS08135	COG1902	pentaerythritol trinitrate reductase activity
DJ564_RS08145	COG0235	Class ii aldolase
DJ564_RS08170	COG0833	amino acid
DJ564_RS08180	COG1024	Enoyl-CoA hydratase
DJ564_RS08185	COG1960	acyl-CoA dehydrogenase activity
DJ564_RS08215	COG0601	transmembrane transport
DJ564_RS08220	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
DJ564_RS08230	COG2249	NAD(P)H dehydrogenase (quinone) activity
DJ564_RS08240	COG0463	Glycosyl transferase, family 2
DJ564_RS08280	COG2807	transmembrane transport
DJ564_RS08290	COG0174	glutamine synthetase
DJ564_RS08295	COG2194	sulfuric ester hydrolase activity
DJ564_RS08310	COG3100	YcgL domain-containing protein
DJ564_RS08315	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
DJ564_RS08325	COG2983	Belongs to the UPF0260 family
DJ564_RS08375	COG0121	glutamine amidotransferase
DJ564_RS08390	COG0583	DNA-binding transcription factor activity
DJ564_RS08395	COG2814	Major facilitator Superfamily
DJ564_RS08400	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
DJ564_RS08405	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
DJ564_RS08410	COG1984	allophanate hydrolase subunit 2
DJ564_RS08420	COG0542	response to heat
DJ564_RS08440	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
DJ564_RS08475	COG2271	Major facilitator Superfamily
DJ564_RS08480	COG3618	amidohydrolase
DJ564_RS08490	COG4948	Mandelate Racemase Muconate Lactonizing
DJ564_RS08500	COG1012	belongs to the aldehyde dehydrogenase family
DJ564_RS08510	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
DJ564_RS08520	COG1643	Atp-dependent helicase
DJ564_RS08545	COG2188	Transcriptional regulator
DJ564_RS08555	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
DJ564_RS08565	COG1132	(ABC) transporter
DJ564_RS08575	COG2267	carboxylic ester hydrolase activity
DJ564_RS08590	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
DJ564_RS08605	COG0668	transmembrane transport
DJ564_RS08610	COG0513	Belongs to the DEAD box helicase family
DJ564_RS08680	COG2996	Protein conserved in bacteria
DJ564_RS08690	COG1953	Uracil, thiamine, allantoin
DJ564_RS08700	COG0697	spore germination
DJ564_RS08710	COG0583	DNA-binding transcription factor activity
DJ564_RS08720	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DJ564_RS08725	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
DJ564_RS08755	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DJ564_RS08810	COG2200	EAL domain
DJ564_RS08820	COG2832	Protein of unknown function (DUF454)
DJ564_RS08835	COG0514	ATP-dependent DNA helicase (RecQ)
DJ564_RS08885	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
DJ564_RS08890	COG0778	Nitroreductase
DJ564_RS08895	COG0642	Histidine kinase
DJ564_RS08910	COG0745	RESPONSE REGULATOR receiver
DJ564_RS08920	COG2350	Protein conserved in bacteria
DJ564_RS08925	COG2917	probably involved in intracellular septation
DJ564_RS08930	COG0613	PHP domain protein
DJ564_RS08935	COG0009	L-threonylcarbamoyladenylate synthase
DJ564_RS08945	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
DJ564_RS08970	COG1113	amino acid transport
DJ564_RS08995	COG2154	pterin-4-alpha-carbinolamine dehydratase
DJ564_RS09015	COG4787	bacterial-type flagellum-dependent cell motility
DJ564_RS09025	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
DJ564_RS09030	COG1706	bacterial-type flagellum-dependent cell motility
DJ564_RS09040	COG1256	bacterial-type flagellum assembly
DJ564_RS09050	COG1215	transferase activity, transferring glycosyl groups
DJ564_RS09085	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DJ564_RS09100	COG0438	transferase activity, transferring glycosyl groups
DJ564_RS09100	COG1216	Glycosyl transferase, family 2
DJ564_RS09105	COG1086	Polysaccharide biosynthesis protein
DJ564_RS09110	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
DJ564_RS09115	COG1083	cytidylyl-transferase
DJ564_RS09125	COG2089	acid synthase
DJ564_RS09155	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
DJ564_RS09190	COG1677	Flagellar hook-basal body complex protein FliE
DJ564_RS09225	COG0745	RESPONSE REGULATOR receiver
DJ564_RS09240	COG1580	Controls the rotational direction of flagella during chemotaxis
DJ564_RS09305	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
DJ564_RS09310	COG0643	Histidine kinase
DJ564_RS09310	COG2198	Histidine kinase
DJ564_RS09310	COG0784	Response regulator, receiver
DJ564_RS09315	COG2201	protein-glutamate methylesterase activity
DJ564_RS09320	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
DJ564_RS09330	COG1192	Involved in chromosome partitioning
DJ564_RS09340	COG0835	chemotaxis
DJ564_RS09350	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
DJ564_RS09360	COG4133	protoheme IX ABC transporter activity
DJ564_RS09380	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
DJ564_RS09385	COG1138	Cytochrome C-type biogenesis protein
DJ564_RS09395	COG3088	subunit of a heme lyase
DJ564_RS09410	COG1028	Short-chain dehydrogenase reductase Sdr
DJ564_RS09415	COG2814	Major facilitator Superfamily
DJ564_RS09430	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DJ564_RS09435	COG4413	Urea transporter
DJ564_RS09440	COG0469	pyruvate kinase activity
DJ564_RS09450	COG2084	Dehydrogenase
DJ564_RS09455	COG3622	Belongs to the hyi family
DJ564_RS09465	COG3960	tartronate-semialdehyde synthase activity
DJ564_RS09480	COG1309	transcriptional regulator
DJ564_RS09485	COG2354	Protein conserved in bacteria
DJ564_RS09490	COG2853	Lipoprotein
DJ564_RS09515	COG2113	Glycine betaine
DJ564_RS09520	COG3162	membrane
DJ564_RS09525	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
DJ564_RS09545	COG2009	succinate dehydrogenase
DJ564_RS09550	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
DJ564_RS09555	COG1053	succinate dehydrogenase
DJ564_RS09560	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
DJ564_RS09575	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DJ564_RS09580	COG0045	succinate-CoA ligase (ADP-forming) activity
DJ564_RS09620	COG0326	Molecular chaperone. Has ATPase activity
DJ564_RS09630	COG1741	Belongs to the pirin family
DJ564_RS09650	COG0626	cystathionine gamma-synthase activity
DJ564_RS09660	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
DJ564_RS09665	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
DJ564_RS09675	COG0628	permease
DJ564_RS09680	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
DJ564_RS09685	COG0791	NLP P60 protein
DJ564_RS09690	COG0791	NLP P60 protein
DJ564_RS09715	COG1797	cobyrinic acid a,c-diamide synthase activity
DJ564_RS09720	COG0778	Nitroreductase
DJ564_RS09735	COG1492	cobalamin metabolic process
DJ564_RS09745	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
DJ564_RS09755	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
DJ564_RS09805	COG2205	protein histidine kinase activity
DJ564_RS09805	COG0784	Response regulator, receiver
DJ564_RS09830	COG0477	Major facilitator Superfamily
DJ564_RS09835	COG2076	Multidrug Resistance protein
DJ564_RS09840	COG0385	Bile acid
DJ564_RS09845	COG2974	May be involved in recombination
DJ564_RS09870	COG0753	catalase activity
DJ564_RS09875	COG2010	Cytochrome c
DJ564_RS09880	COG0545	Peptidyl-prolyl cis-trans isomerase
DJ564_RS09915	COG0793	Belongs to the peptidase S41A family
DJ564_RS09920	COG0604	alcohol dehydrogenase
DJ564_RS09920	COG3321	synthase
DJ564_RS09920	COG4221	oxidoreductase activity
DJ564_RS09920	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
DJ564_RS09930	COG3842	ATPase activity
DJ564_RS09940	COG1176	ABC-type spermidine putrescine transport system, permease component I
DJ564_RS09960	COG0668	transmembrane transport
DJ564_RS09965	COG1362	aminopeptidase activity
DJ564_RS09975	COG0564	pseudouridine synthase activity
DJ564_RS09980	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
DJ564_RS09985	COG2894	cell division
DJ564_RS09990	COG0850	regulation of cytokinetic process
DJ564_RS09995	COG1560	Kdo2-lipid A biosynthetic process
DJ564_RS10020	COG2233	PERMEase
DJ564_RS10030	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
DJ564_RS10035	COG4266	Belongs to the allantoicase family
DJ564_RS10060	COG2252	PERMEase
DJ564_RS10070	COG0302	gtp cyclohydrolase
DJ564_RS10075	COG2840	Smr protein MutS2
DJ564_RS10100	COG1073	alpha beta
DJ564_RS10105	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
DJ564_RS10115	COG0235	Class ii aldolase
DJ564_RS10120	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
DJ564_RS10125	COG4229	Bifunctional enzyme that catalyzes the enolization of 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P) into the intermediate 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate (HK-MTPenyl-1-P), which is then dephosphorylated to form the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK- MTPene)
DJ564_RS10135	COG0318	PFAM AMP-dependent synthetase and ligase
DJ564_RS10155	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
DJ564_RS10170	COG2308	Evidence 4 Homologs of previously reported genes of
DJ564_RS10180	COG1305	Transglutaminase-like
DJ564_RS10190	COG0183	Belongs to the thiolase family
DJ564_RS10195	COG1250	3-hydroxyacyl-CoA dehydrogenase
DJ564_RS10195	COG1024	Enoyl-CoA hydratase
DJ564_RS10200	COG0519	Catalyzes the synthesis of GMP from XMP
DJ564_RS10200	COG0518	GMP synthase (glutamine-hydrolyzing) activity
DJ564_RS10205	COG0598	Magnesium transport protein CorA
DJ564_RS10230	COG0393	Putative heavy-metal-binding
DJ564_RS10270	COG3209	COG3209 Rhs family protein
DJ564_RS10275	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DJ564_RS10280	COG1028	Short-chain dehydrogenase reductase Sdr
DJ564_RS10285	COG0583	DNA-binding transcription factor activity
DJ564_RS10305	COG0560	Phosphoserine phosphatase
DJ564_RS10310	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
DJ564_RS10320	COG0189	ligase activity
DJ564_RS10330	COG4067	protein conserved in archaea
DJ564_RS10330	COG0189	ligase activity
DJ564_RS10335	COG1802	Transcriptional regulator
DJ564_RS10345	COG0372	Belongs to the citrate synthase family
DJ564_RS10350	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
DJ564_RS10365	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
DJ564_RS10380	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
DJ564_RS10395	COG0668	transmembrane transport
DJ564_RS10410	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
DJ564_RS10415	COG0243	molybdopterin cofactor binding
DJ564_RS10425	COG0515	serine threonine protein kinase
DJ564_RS10425	COG2815	serine threonine protein kinase
DJ564_RS10430	COG2223	nitrite transmembrane transporter activity
DJ564_RS10435	COG3707	response regulator
DJ564_RS10440	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
DJ564_RS10440	COG1116	anion transmembrane transporter activity
DJ564_RS10445	COG0167	dihydroorotate dehydrogenase activity
DJ564_RS10450	COG3130	regulation of translation
DJ564_RS10455	COG0116	Belongs to the methyltransferase superfamily
DJ564_RS10455	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
DJ564_RS10470	COG2027	D-alanyl-D-alanine carboxypeptidase
DJ564_RS10475	COG3171	Protein conserved in bacteria
DJ564_RS10480	COG3135	benzoate transporter
DJ564_RS10485	COG1802	Transcriptional regulator
DJ564_RS10490	COG0402	S-adenosylhomocysteine deaminase activity
DJ564_RS10515	COG1196	nuclear chromosome segregation
DJ564_RS10520	COG3115	cell septum assembly
DJ564_RS10525	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
DJ564_RS10605	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
DJ564_RS10610	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
DJ564_RS10615	COG2130	NADP-dependent
DJ564_RS10620	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
DJ564_RS10625	COG1960	acyl-CoA dehydrogenase activity
DJ564_RS10630	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
DJ564_RS10635	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DJ564_RS10655	COG2217	Heavy metal translocating P-type atpase
DJ564_RS10670	COG0348	domain, Protein
DJ564_RS10680	COG2010	Cytochrome c
DJ564_RS10695	COG3278	Belongs to the heme-copper respiratory oxidase family
DJ564_RS10700	COG2010	Cytochrome c
DJ564_RS10715	COG3278	Belongs to the heme-copper respiratory oxidase family
DJ564_RS10730	COG0840	transmembrane signaling receptor activity
DJ564_RS10745	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
DJ564_RS10750	COG0425	Belongs to the sulfur carrier protein TusA family
DJ564_RS10760	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
DJ564_RS10770	COG1132	(ABC) transporter
DJ564_RS10775	COG0741	lytic transglycosylase activity
DJ564_RS10785	COG0488	(ABC) transporter
DJ564_RS10795	COG0589	response to stress
DJ564_RS10805	COG1250	3-hydroxyacyl-CoA dehydrogenase
DJ564_RS10805	COG1024	Enoyl-CoA hydratase
DJ564_RS10810	COG0183	Belongs to the thiolase family
DJ564_RS10855	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
DJ564_RS10865	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
DJ564_RS10875	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
DJ564_RS10890	COG1477	protein flavinylation
DJ564_RS10895	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DJ564_RS10900	COG0584	glycerophosphoryl diester phosphodiesterase
DJ564_RS10910	COG4591	ABC-type transport system involved in lipoprotein release permease component
DJ564_RS10915	COG1136	(ABC) transporter
DJ564_RS10920	COG4591	ABC-type transport system involved in lipoprotein release permease component
DJ564_RS10940	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
DJ564_RS10940	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
DJ564_RS10955	COG2853	Lipoprotein
DJ564_RS10975	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
DJ564_RS10990	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
DJ564_RS11040	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
DJ564_RS11065	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
DJ564_RS11070	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
DJ564_RS11090	COG1968	undecaprenyl-diphosphatase activity
DJ564_RS11095	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
DJ564_RS11110	COG2217	Heavy metal translocating P-type atpase
DJ564_RS11140	COG2132	Multicopper oxidase
DJ564_RS11150	COG2989	Protein conserved in bacteria
DJ564_RS11160	COG0583	DNA-binding transcription factor activity
DJ564_RS11170	COG0235	Class ii aldolase
DJ564_RS11175	COG2203	Gaf domain
DJ564_RS11175	COG3706	GGDEF domain
DJ564_RS11175	COG4251	negative regulation of phosphorylation
DJ564_RS11175	COG5001	Diguanylate cyclase
DJ564_RS11215	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
DJ564_RS11240	COG4251	negative regulation of phosphorylation
DJ564_RS11240	COG2203	Gaf domain
DJ564_RS11240	COG3706	GGDEF domain
DJ564_RS11240	COG5001	Diguanylate cyclase
DJ564_RS11245	COG4989	oxidoreductase activity
DJ564_RS11250	COG0596	Alpha beta hydrolase
DJ564_RS11255	COG1737	Transcriptional regulator
DJ564_RS11285	COG1846	Transcriptional regulator
DJ564_RS11320	COG0625	glutathione transferase activity
DJ564_RS11325	COG0583	DNA-binding transcription factor activity
DJ564_RS11340	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DJ564_RS11340	COG1017	nitric oxide dioxygenase activity
DJ564_RS11375	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DJ564_RS11380	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
DJ564_RS11430	COG2433	Pfam Transposase IS66
DJ564_RS11450	COG0326	Molecular chaperone. Has ATPase activity
DJ564_RS11480	COG0709	Synthesizes selenophosphate from selenide and ATP
DJ564_RS11485	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
DJ564_RS11495	COG0625	glutathione transferase activity
DJ564_RS11500	COG0384	phenazine biosynthesis protein PhzF
DJ564_RS11505	COG0113	porphobilinogen synthase activity
DJ564_RS11555	COG0517	IMP dehydrogenase activity
DJ564_RS11560	COG0417	DNA replication proofreading
DJ564_RS11570	COG0656	L-ascorbic acid biosynthetic process
DJ564_RS11585	COG0730	response to heat
DJ564_RS11630	COG1609	Transcriptional regulator
DJ564_RS11645	COG0583	DNA-binding transcription factor activity
DJ564_RS11650	COG0826	peptidase U32
DJ564_RS11655	COG0628	permease
DJ564_RS11675	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
DJ564_RS11685	COG3132	Protein of unknown function, DUF480
DJ564_RS11695	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
DJ564_RS11700	COG2814	Major facilitator Superfamily
DJ564_RS11705	COG0583	DNA-binding transcription factor activity
DJ564_RS11715	COG1253	flavin adenine dinucleotide binding
DJ564_RS11735	COG1686	Belongs to the peptidase S11 family
DJ564_RS11740	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
DJ564_RS11765	COG0544	peptidyl-prolyl cis-trans isomerase activity
DJ564_RS11770	COG0740	serine-type endopeptidase activity
DJ564_RS11775	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
DJ564_RS11780	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
DJ564_RS11785	COG0776	regulation of translation
DJ564_RS11810	COG1902	pentaerythritol trinitrate reductase activity
DJ564_RS11810	COG0446	pyridine nucleotide-disulphide oxidoreductase
DJ564_RS11820	COG3038	cytochrome b561
DJ564_RS11825	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DJ564_RS11835	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
DJ564_RS11840	COG0583	DNA-binding transcription factor activity
DJ564_RS11845	COG0583	DNA-binding transcription factor activity
DJ564_RS11855	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DJ564_RS11865	COG0217	transcriptional regulatory protein
DJ564_RS11940	COG1177	transmembrane transport
DJ564_RS11945	COG1176	ABC-type spermidine putrescine transport system, permease component I
DJ564_RS11950	COG3842	ATPase activity
DJ564_RS11960	COG1414	Transcriptional regulator
DJ564_RS11985	COG3038	cytochrome b561
DJ564_RS11990	COG2866	Carboxypeptidase
DJ564_RS12000	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
DJ564_RS12010	COG1024	Enoyl-CoA hydratase
DJ564_RS12015	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
DJ564_RS12020	COG1960	acyl-CoA dehydrogenase activity
DJ564_RS12025	COG0318	PFAM AMP-dependent synthetase and ligase
DJ564_RS12035	COG0789	Transcriptional regulator
DJ564_RS12045	COG1960	acyl-CoA dehydrogenase activity
DJ564_RS12050	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
DJ564_RS12055	COG0708	Exodeoxyribonuclease III
DJ564_RS12065	COG0729	surface antigen
DJ564_RS12070	COG2911	Protein conserved in bacteria
DJ564_RS12075	COG1846	Transcriptional regulator
DJ564_RS12085	COG1566	PFAM secretion protein HlyD family protein
DJ564_RS12090	COG2814	Major facilitator Superfamily
DJ564_RS12095	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
DJ564_RS12105	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
DJ564_RS12110	COG0215	cysteine-tRNA ligase activity
DJ564_RS12115	COG3284	Transcriptional regulator
DJ564_RS12120	COG3842	ATPase activity
DJ564_RS12125	COG3842	ATPase activity
DJ564_RS12135	COG0395	ABC-type sugar transport system, permease component
DJ564_RS12165	COG2944	sequence-specific DNA binding
DJ564_RS12205	COG0713	ATP synthesis coupled electron transport
DJ564_RS12215	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DJ564_RS12220	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
DJ564_RS12225	COG1034	ATP synthesis coupled electron transport
DJ564_RS12240	COG0649	NAD binding
DJ564_RS12240	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DJ564_RS12245	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DJ564_RS12250	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
DJ564_RS12265	COG2153	protein acetylation
DJ564_RS12270	COG2850	peptidyl-arginine hydroxylation
DJ564_RS12280	COG2915	High frequency lysogenization protein hflD homolog
DJ564_RS12285	COG0482	sulfurtransferase activity
DJ564_RS12310	COG1278	Cold shock
DJ564_RS12315	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
DJ564_RS12320	COG0542	response to heat
DJ564_RS12325	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
DJ564_RS12330	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
DJ564_RS12335	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
DJ564_RS12340	COG0492	ferredoxin-NADP+ reductase activity
DJ564_RS12345	COG1674	ftsk spoiiie
DJ564_RS12350	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
DJ564_RS12355	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
DJ564_RS12360	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
DJ564_RS12365	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
DJ564_RS12370	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
DJ564_RS12370	COG1648	precorrin-2 dehydrogenase activity
DJ564_RS12375	COG0435	Glutathione S-transferase
DJ564_RS12380	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
DJ564_RS12385	COG2920	part of a sulfur-relay system
DJ564_RS12445	COG3469	chitinase activity
DJ564_RS12450	COG0494	nUDIX hydrolase
DJ564_RS12465	COG1335	isochorismatase
DJ564_RS12475	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
DJ564_RS12490	COG0569	domain protein
DJ564_RS12495	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
DJ564_RS12505	COG0679	Auxin Efflux Carrier
DJ564_RS12510	COG4948	Mandelate Racemase Muconate Lactonizing
DJ564_RS12515	COG1609	Transcriptional regulator
DJ564_RS12550	COG0625	glutathione transferase activity
DJ564_RS12560	COG2816	NAD+ diphosphatase activity
DJ564_RS12575	COG0583	DNA-binding transcription factor activity
DJ564_RS12615	COG0174	glutamine synthetase
DJ564_RS12640	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
DJ564_RS12645	COG0450	alkyl hydroperoxide reductase
DJ564_RS12650	COG0456	acetyltransferase
DJ564_RS12665	COG2264	protein methyltransferase activity
DJ564_RS12695	COG1959	2 iron, 2 sulfur cluster binding
DJ564_RS12710	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
DJ564_RS12745	COG5507	3-demethylubiquinone-9 3-methyltransferase
DJ564_RS12755	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
DJ564_RS12765	COG1177	transmembrane transport
DJ564_RS12770	COG1176	ABC-type spermidine putrescine transport system, permease component I
DJ564_RS12775	COG3842	ATPase activity
DJ564_RS12780	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
DJ564_RS12785	COG0174	glutamine synthetase
DJ564_RS12790	COG1012	belongs to the aldehyde dehydrogenase family
DJ564_RS12795	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DJ564_RS12800	COG1396	sequence-specific DNA binding
DJ564_RS12800	COG1917	Cupin 2, conserved barrel domain protein
DJ564_RS12805	COG2816	NAD+ diphosphatase activity
DJ564_RS12850	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
DJ564_RS12870	COG2072	flavoprotein involved in K transport
DJ564_RS12885	COG1999	signal sequence binding
DJ564_RS12890	COG2879	small protein
DJ564_RS12915	COG0477	Major facilitator Superfamily
DJ564_RS12925	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
DJ564_RS12965	COG1620	l-lactate permease
DJ564_RS13005	COG2259	Doxx family
DJ564_RS13020	COG2066	Belongs to the glutaminase family
DJ564_RS13025	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
DJ564_RS13040	COG1017	nitric oxide dioxygenase activity
DJ564_RS13040	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DJ564_RS13045	COG0288	reversible hydration of carbon dioxide
DJ564_RS13055	COG1513	Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide
DJ564_RS13060	COG0583	DNA-binding transcription factor activity
DJ564_RS13085	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
DJ564_RS13095	COG1304	FMN binding
DJ564_RS13145	COG4221	oxidoreductase activity
DJ564_RS13155	COG1022	Amp-dependent synthetase and ligase
DJ564_RS13165	COG3038	cytochrome b561
DJ564_RS13195	COG4335	DNA alkylation repair
DJ564_RS13240	COG3718	enzyme involved in inositol metabolism
DJ564_RS13255	COG3962	Belongs to the TPP enzyme family
DJ564_RS13260	COG0673	inositol 2-dehydrogenase activity
DJ564_RS13265	COG0673	inositol 2-dehydrogenase activity
DJ564_RS13275	COG1129	ABC transporter
DJ564_RS13280	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJ564_RS13335	COG1320	monovalent cation:proton antiporter activity
DJ564_RS13340	COG2212	antiporter activity
DJ564_RS13350	COG0651	ATP synthesis coupled electron transport
DJ564_RS13355	COG1006	Multisubunit Na H antiporter MnhC subunit
DJ564_RS13360	COG2111	Na H antiporter
DJ564_RS13360	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
DJ564_RS13400	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DJ564_RS13410	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DJ564_RS13440	COG1611	Belongs to the LOG family
DJ564_RS13450	COG4251	negative regulation of phosphorylation
DJ564_RS13450	COG3706	GGDEF domain
DJ564_RS13450	COG5001	Diguanylate cyclase
DJ564_RS13450	COG2203	Gaf domain
DJ564_RS13480	COG2135	peptidase activity
DJ564_RS13500	COG4948	Mandelate Racemase Muconate Lactonizing
DJ564_RS13505	COG4829	muconolactone delta-isomerase
DJ564_RS13510	COG3485	protocatechuate 3,4-dioxygenase
DJ564_RS13540	COG1051	belongs to the nudix hydrolase family
DJ564_RS13620	COG0531	amino acid
DJ564_RS13630	COG5002	protein histidine kinase activity
DJ564_RS13630	COG5001	Diguanylate cyclase
DJ564_RS13630	COG3447	MASE1 domain protein
DJ564_RS13640	COG4247	3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase)
DJ564_RS13660	COG0583	DNA-binding transcription factor activity
DJ564_RS13665	COG2814	Major facilitator Superfamily
DJ564_RS13685	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
DJ564_RS13705	COG2207	Transcriptional regulator
DJ564_RS13715	COG1028	Short-chain dehydrogenase reductase Sdr
DJ564_RS13725	COG4221	oxidoreductase activity
DJ564_RS13745	COG1522	sequence-specific DNA binding
DJ564_RS13750	COG0697	spore germination
DJ564_RS13780	COG0673	inositol 2-dehydrogenase activity
DJ564_RS13800	COG0583	DNA-binding transcription factor activity
DJ564_RS13810	COG1028	Short-chain dehydrogenase reductase Sdr
DJ564_RS13825	COG5002	protein histidine kinase activity
DJ564_RS13830	COG0745	RESPONSE REGULATOR receiver
DJ564_RS13845	COG3383	formate dehydrogenase (NAD+) activity
DJ564_RS13850	COG0446	pyridine nucleotide-disulphide oxidoreductase
DJ564_RS13855	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DJ564_RS13865	COG0583	DNA-binding transcription factor activity
DJ564_RS13920	COG1230	cation diffusion facilitator family transporter
DJ564_RS13945	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
DJ564_RS13950	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
DJ564_RS13960	COG0022	dehydrogenase e1 component
DJ564_RS13965	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
DJ564_RS13970	COG1522	sequence-specific DNA binding
DJ564_RS13980	COG0730	response to heat
DJ564_RS13995	COG2205	protein histidine kinase activity
DJ564_RS13995	COG0784	Response regulator, receiver
DJ564_RS14015	COG1131	(ABC) transporter
DJ564_RS14030	COG4585	Histidine kinase
DJ564_RS14100	COG5424	Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ
DJ564_RS14105	COG0535	radical SAM domain protein
DJ564_RS14115	COG2205	protein histidine kinase activity
DJ564_RS14115	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DJ564_RS14115	COG2198	Histidine kinase
DJ564_RS14115	COG0784	Response regulator, receiver
DJ564_RS14135	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
DJ564_RS14145	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DJ564_RS14155	COG1309	transcriptional regulator
DJ564_RS14165	COG0493	'glutamate synthase
DJ564_RS14175	COG1953	Uracil, thiamine, allantoin
DJ564_RS14205	COG0673	inositol 2-dehydrogenase activity
DJ564_RS14210	COG1028	Short-chain dehydrogenase reductase Sdr
DJ564_RS14220	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
DJ564_RS14230	COG1942	4-Oxalocrotonate Tautomerase
DJ564_RS14240	COG1538	Outer membrane efflux protein
DJ564_RS14265	COG0814	amino acid
DJ564_RS14285	COG0589	response to stress
DJ564_RS14295	COG0745	RESPONSE REGULATOR receiver
DJ564_RS14300	COG2205	protein histidine kinase activity
DJ564_RS14310	COG3791	Glutathione-dependent formaldehyde-activating
DJ564_RS14320	COG0583	DNA-binding transcription factor activity
DJ564_RS14345	COG2169	Transcriptional regulator
DJ564_RS14345	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
DJ564_RS14350	COG0431	NADPH-dependent FMN reductase
DJ564_RS14355	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
DJ564_RS14395	COG3209	COG3209 Rhs family protein
DJ564_RS14435	COG3287	FIST C domain
DJ564_RS14435	COG2199	diguanylate cyclase activity
DJ564_RS14435	COG2200	EAL domain
DJ564_RS14445	COG3706	GGDEF domain
DJ564_RS14495	COG0697	spore germination
DJ564_RS14500	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DJ564_RS14550	COG0583	DNA-binding transcription factor activity
DJ564_RS14555	COG1028	Short-chain dehydrogenase reductase Sdr
DJ564_RS14575	COG3706	GGDEF domain
DJ564_RS14585	COG0583	DNA-binding transcription factor activity
DJ564_RS14600	COG4172	Belongs to the ABC transporter superfamily
DJ564_RS14605	COG4239	(ABC) transporter, permease
DJ564_RS14610	COG4174	ABC transporter (Permease)
DJ564_RS14620	COG4166	transmembrane transport
DJ564_RS14625	COG0741	lytic transglycosylase activity
DJ564_RS14625	COG1388	LysM domain
DJ564_RS14630	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DJ564_RS14640	COG0328	RNA-DNA hybrid ribonuclease activity
DJ564_RS14650	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
DJ564_RS14675	COG0431	NADPH-dependent FMN reductase
DJ564_RS14680	COG0640	Transcriptional regulator
DJ564_RS14685	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
DJ564_RS14695	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
DJ564_RS14700	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
DJ564_RS14705	COG0705	Rhomboid family
DJ564_RS14710	COG3139	Protein of unknown function (DUF1315)
DJ564_RS14720	COG0308	aminopeptidase N
DJ564_RS14750	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DJ564_RS14775	COG1012	belongs to the aldehyde dehydrogenase family
DJ564_RS14790	COG2706	6-phosphogluconolactonase activity
DJ564_RS14820	COG0420	3'-5' exonuclease activity
DJ564_RS14850	COG0714	Associated with various cellular activities
DJ564_RS14890	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
DJ564_RS14900	COG1247	-acetyltransferase
DJ564_RS14905	COG1794	racemase activity, acting on amino acids and derivatives
DJ564_RS14925	COG3278	Belongs to the heme-copper respiratory oxidase family
DJ564_RS14940	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
DJ564_RS14980	COG3795	YCII-related domain
DJ564_RS15025	COG1538	Outer membrane efflux protein
DJ564_RS15035	COG1028	Short-chain dehydrogenase reductase Sdr
DJ564_RS15040	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DJ564_RS15045	COG0348	domain, Protein
DJ564_RS15055	COG1285	pathogenesis
DJ564_RS15065	COG0366	Alpha amylase catalytic
DJ564_RS15070	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
DJ564_RS15090	COG3568	Endonuclease Exonuclease Phosphatase
DJ564_RS15135	COG1640	4-alpha-glucanotransferase
DJ564_RS15140	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
DJ564_RS15145	COG0297	glycogen (starch) synthase activity
DJ564_RS15150	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
DJ564_RS15155	COG0596	Alpha beta hydrolase
DJ564_RS15160	COG1238	metal cluster binding
DJ564_RS15180	COG0667	Aldo Keto reductase
DJ564_RS15185	COG0583	DNA-binding transcription factor activity
DJ564_RS15225	COG2366	antibiotic biosynthetic process
DJ564_RS15270	COG2233	PERMEase
DJ564_RS15285	COG0010	Belongs to the arginase family
DJ564_RS15290	COG0667	Aldo Keto reductase
DJ564_RS15305	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
DJ564_RS15335	COG2194	sulfuric ester hydrolase activity
DJ564_RS15345	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
DJ564_RS15350	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
DJ564_RS15355	COG0561	phosphatase activity
DJ564_RS15360	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
DJ564_RS15375	COG2204	response regulator
DJ564_RS15420	COG0840	transmembrane signaling receptor activity
DJ564_RS15425	COG1968	undecaprenyl-diphosphatase activity
DJ564_RS15440	COG0583	DNA-binding transcription factor activity
DJ564_RS15445	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
DJ564_RS15465	COG0488	(ABC) transporter
DJ564_RS15475	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
DJ564_RS15485	COG2133	pyrroloquinoline quinone binding
DJ564_RS15500	COG0189	ligase activity
DJ564_RS15505	COG0598	Magnesium transport protein CorA
DJ564_RS15515	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
DJ564_RS15520	COG4574	serine-type endopeptidase inhibitor activity
DJ564_RS15580	COG1070	Carbohydrate kinase
DJ564_RS15585	COG0246	Mannitol dehydrogenase
DJ564_RS15600	COG1175	transmembrane transport
DJ564_RS15635	COG0784	Response regulator, receiver
DJ564_RS15635	COG2205	protein histidine kinase activity
DJ564_RS15640	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
DJ564_RS15650	COG0784	Response regulator, receiver
DJ564_RS15650	COG5002	protein histidine kinase activity
DJ564_RS15650	COG2205	protein histidine kinase activity
DJ564_RS15665	COG0467	Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction
DJ564_RS15675	COG1289	transmembrane transporter activity
DJ564_RS15685	COG1566	PFAM secretion protein HlyD family protein
DJ564_RS15710	COG0604	alcohol dehydrogenase
DJ564_RS15710	COG1028	Short-chain dehydrogenase reductase Sdr
DJ564_RS15710	COG3321	synthase
DJ564_RS15720	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DJ564_RS15735	COG0210	DNA helicase
DJ564_RS15750	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DJ564_RS15805	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
DJ564_RS15810	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
DJ564_RS15830	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
DJ564_RS15830	COG1199	ATP-dependent helicase activity
DJ564_RS15880	COG1028	Short-chain dehydrogenase reductase Sdr
DJ564_RS15885	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
DJ564_RS15890	COG3383	formate dehydrogenase (NAD+) activity
DJ564_RS15890	COG0243	molybdopterin cofactor binding
DJ564_RS15895	COG0243	molybdopterin cofactor binding
DJ564_RS15895	COG3383	formate dehydrogenase (NAD+) activity
DJ564_RS15900	COG0437	4 iron, 4 sulfur cluster binding
DJ564_RS15905	COG2864	formate dehydrogenase
DJ564_RS15910	COG3058	Necessary for formate dehydrogenase activity
DJ564_RS15915	COG1921	L-seryl-tRNASec selenium transferase activity
DJ564_RS15920	COG3276	selenocysteine insertion sequence binding
DJ564_RS15935	COG1335	isochorismatase
DJ564_RS15940	COG3243	poly(R)-hydroxyalkanoic acid synthase
DJ564_RS15950	COG1028	Short-chain dehydrogenase reductase Sdr
DJ564_RS15980	COG1960	acyl-CoA dehydrogenase activity
DJ564_RS15985	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
DJ564_RS16005	COG4191	Histidine kinase
DJ564_RS16010	COG4566	intracellular signal transduction
DJ564_RS16015	COG0628	permease
DJ564_RS16035	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DJ564_RS16045	COG0174	glutamine synthetase
DJ564_RS16050	COG2146	nitrite reductase [NAD(P)H] activity
DJ564_RS16050	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
DJ564_RS16055	COG2146	nitrite reductase [NAD(P)H] activity
DJ564_RS16055	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
DJ564_RS16080	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
DJ564_RS16085	COG3938	Belongs to the proline racemase family
DJ564_RS16090	COG0531	amino acid
DJ564_RS16095	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
DJ564_RS16095	COG2207	Transcriptional regulator
DJ564_RS16100	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
DJ564_RS16120	COG1621	beta-fructofuranosidase activity
DJ564_RS16125	COG3842	ATPase activity
DJ564_RS16140	COG1653	transport
DJ564_RS16180	COG2433	Pfam Transposase IS66
DJ564_RS16250	COG5642	Protein of unknown function (DUF2384)
DJ564_RS16285	COG0583	DNA-binding transcription factor activity
DJ564_RS16295	COG1301	dicarboxylic acid transport
DJ564_RS16300	COG1309	transcriptional regulator
DJ564_RS16305	COG1902	pentaerythritol trinitrate reductase activity
DJ564_RS16310	COG4221	oxidoreductase activity
DJ564_RS16325	COG0702	epimerase
DJ564_RS16340	COG1733	regulation of RNA biosynthetic process
DJ564_RS16345	COG1902	pentaerythritol trinitrate reductase activity
DJ564_RS16370	COG2323	membrane
DJ564_RS16400	COG0467	Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction
DJ564_RS16430	COG5001	Diguanylate cyclase
DJ564_RS16430	COG3300	MHYT domain
DJ564_RS16450	COG3706	GGDEF domain
DJ564_RS16460	COG0784	Response regulator, receiver
DJ564_RS16460	COG4191	Histidine kinase
DJ564_RS16470	COG3706	GGDEF domain
DJ564_RS16470	COG4251	negative regulation of phosphorylation
DJ564_RS16470	COG5001	Diguanylate cyclase
DJ564_RS16470	COG2203	Gaf domain
DJ564_RS16520	COG3046	protein related to deoxyribodipyrimidine photolyase
DJ564_RS16545	COG0840	transmembrane signaling receptor activity
DJ564_RS16600	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DJ564_RS16605	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
DJ564_RS16610	COG5569	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DJ564_RS16655	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
DJ564_RS16690	COG1196	nuclear chromosome segregation
DJ564_RS16695	COG1074	ATP-dependent DNA helicase activity
DJ564_RS16780	COG2855	membrane
DJ564_RS16795	COG0477	Major facilitator Superfamily
DJ564_RS16800	COG3246	L-lysine catabolic process to acetate
DJ564_RS16805	COG2175	clavaminate synthase activity
DJ564_RS16825	COG2879	small protein
DJ564_RS16830	COG1966	Carbon starvation protein
DJ564_RS16880	COG3264	Mechanosensitive ion channel
DJ564_RS16880	COG1511	domain protein
DJ564_RS16890	COG0174	glutamine synthetase
DJ564_RS16900	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DJ564_RS16915	COG2995	paraquat-inducible protein a
DJ564_RS16920	COG3008	intermembrane lipid transfer
DJ564_RS16940	COG3842	ATPase activity
DJ564_RS16945	COG4974	Belongs to the 'phage' integrase family
DJ564_RS16950	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
DJ564_RS16955	COG0463	Glycosyl transferase, family 2
DJ564_RS16960	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DJ564_RS16960	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
DJ564_RS16965	COG0726	polysaccharide deacetylase
DJ564_RS16970	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
DJ564_RS16975	COG2076	Multidrug Resistance protein
DJ564_RS16980	COG2076	Multidrug Resistance protein
DJ564_RS17000	COG0165	Argininosuccinate lyase
DJ564_RS17005	COG0765	amino acid transport
DJ564_RS17035	COG2814	Major facilitator Superfamily
DJ564_RS17060	COG1024	Enoyl-CoA hydratase
DJ564_RS17065	COG1960	acyl-CoA dehydrogenase activity
DJ564_RS17070	COG1024	Enoyl-CoA hydratase
DJ564_RS17075	COG1960	acyl-CoA dehydrogenase activity
DJ564_RS17085	COG0183	Belongs to the thiolase family
DJ564_RS17095	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
DJ564_RS17100	COG2207	Transcriptional regulator
DJ564_RS17110	COG0672	)-iron permease
DJ564_RS17115	COG2822	iron ion transport
DJ564_RS17125	COG2822	iron ion transport
DJ564_RS17135	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
DJ564_RS17155	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
DJ564_RS17170	COG2816	NAD+ diphosphatase activity
DJ564_RS17175	COG1024	Enoyl-CoA hydratase
DJ564_RS17185	COG3038	cytochrome b561
DJ564_RS17195	COG1595	DNA-templated transcription, initiation
DJ564_RS17205	COG1335	isochorismatase
DJ564_RS17220	COG2205	protein histidine kinase activity
DJ564_RS17225	COG0745	RESPONSE REGULATOR receiver
DJ564_RS17230	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DJ564_RS17235	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
DJ564_RS17270	COG1609	Transcriptional regulator
DJ564_RS17280	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DJ564_RS17310	COG1929	Belongs to the glycerate kinase type-1 family
DJ564_RS17315	COG3835	regulator
DJ564_RS17320	COG2271	Major facilitator Superfamily
DJ564_RS17330	COG0667	Aldo Keto reductase
DJ564_RS17345	COG0697	spore germination
DJ564_RS17350	COG0583	DNA-binding transcription factor activity
DJ564_RS17355	COG2200	EAL domain
DJ564_RS17375	COG3634	alkyl hydroperoxide reductase activity
DJ564_RS17430	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
DJ564_RS17430	COG2169	Transcriptional regulator
DJ564_RS17440	COG3145	DNA-N1-methyladenine dioxygenase activity
DJ564_RS17445	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
DJ564_RS17445	COG2169	Transcriptional regulator
DJ564_RS17450	COG0604	alcohol dehydrogenase
DJ564_RS17470	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
DJ564_RS17545	COG1846	Transcriptional regulator
DJ564_RS17555	COG1999	signal sequence binding
DJ564_RS17610	COG1192	Involved in chromosome partitioning
DJ564_RS17640	COG0469	pyruvate kinase activity
DJ564_RS17670	COG1595	DNA-templated transcription, initiation
DJ564_RS17680	COG3220	belongs to the UPF0276 family
DJ564_RS17730	COG1017	nitric oxide dioxygenase activity
DJ564_RS17730	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DJ564_RS17740	COG1028	Short-chain dehydrogenase reductase Sdr
DJ564_RS17745	COG3708	Transcriptional regulator
DJ564_RS17745	COG2207	Transcriptional regulator
DJ564_RS17755	COG1335	isochorismatase
DJ564_RS17775	COG2258	MOSC domain
DJ564_RS17830	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
DJ564_RS17925	COG0322	excinuclease ABC activity
DJ564_RS17930	COG2197	response regulator
DJ564_RS17940	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
DJ564_RS17945	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
DJ564_RS17950	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DJ564_RS17955	COG4166	transmembrane transport
DJ564_RS17960	COG4174	ABC transporter (Permease)
DJ564_RS17965	COG4239	(ABC) transporter, permease
DJ564_RS17970	COG4172	Belongs to the ABC transporter superfamily
DJ564_RS17980	COG2610	gluconate transmembrane transporter activity
DJ564_RS17985	COG1028	Short-chain dehydrogenase reductase Sdr
DJ564_RS17990	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
DJ564_RS18010	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DJ564_RS18015	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DJ564_RS18040	COG0765	amino acid transport
DJ564_RS18045	COG0765	amino acid transport
DJ564_RS18065	COG1253	flavin adenine dinucleotide binding
DJ564_RS18070	COG0583	DNA-binding transcription factor activity
DJ564_RS18095	COG0028	Belongs to the TPP enzyme family
DJ564_RS18145	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
DJ564_RS18145	COG0316	Belongs to the HesB IscA family
DJ564_RS18150	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
DJ564_RS18190	COG0616	signal peptide processing
DJ564_RS18255	COG1366	Belongs to the anti-sigma-factor antagonist family
DJ564_RS18260	COG1366	Belongs to the anti-sigma-factor antagonist family
DJ564_RS18265	COG2172	sigma factor antagonist activity
DJ564_RS18280	COG4191	Histidine kinase
DJ564_RS18280	COG0784	Response regulator, receiver
DJ564_RS18290	COG0784	Response regulator, receiver
DJ564_RS18290	COG4191	Histidine kinase
DJ564_RS18315	COG0587	DNA-directed DNA polymerase activity
DJ564_RS18330	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
DJ564_RS18340	COG0402	S-adenosylhomocysteine deaminase activity
DJ564_RS18355	COG0579	oxidoreductase
DJ564_RS18360	COG2271	Major facilitator Superfamily
DJ564_RS18365	COG1028	Short-chain dehydrogenase reductase Sdr
DJ564_RS18385	COG0583	DNA-binding transcription factor activity
DJ564_RS18390	COG1012	belongs to the aldehyde dehydrogenase family
DJ564_RS18415	COG1283	sodium-dependent phosphate transmembrane transporter activity
DJ564_RS18430	COG0765	amino acid transport
DJ564_RS18435	COG0765	amino acid transport
DJ564_RS18440	COG1126	abc transporter atp-binding protein
DJ564_RS18450	COG1113	amino acid transport
DJ564_RS18455	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DJ564_RS18465	COG0251	oxidation-reduction process
DJ564_RS18480	COG0300	oxidoreductase activity
DJ564_RS18495	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
DJ564_RS18510	COG0116	Belongs to the methyltransferase superfamily
DJ564_RS18510	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
DJ564_RS18545	COG1028	Short-chain dehydrogenase reductase Sdr
DJ564_RS18550	COG1764	response to oxidative stress
DJ564_RS18555	COG1764	response to oxidative stress
DJ564_RS18560	COG1764	response to oxidative stress
DJ564_RS18565	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
DJ564_RS18570	COG0583	DNA-binding transcription factor activity
DJ564_RS18575	COG1012	belongs to the aldehyde dehydrogenase family
DJ564_RS18585	COG0667	Aldo Keto reductase
DJ564_RS18625	COG0489	protein tyrosine kinase activity
DJ564_RS18645	COG0438	transferase activity, transferring glycosyl groups
DJ564_RS18650	COG0438	transferase activity, transferring glycosyl groups
DJ564_RS18660	COG1215	transferase activity, transferring glycosyl groups
DJ564_RS18700	COG4191	Histidine kinase
DJ564_RS18705	COG4566	intracellular signal transduction
DJ564_RS18710	COG4566	intracellular signal transduction
DJ564_RS18735	COG0129	dihydroxy-acid dehydratase activity
DJ564_RS18815	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
DJ564_RS18825	COG4774	siderophore transport
DJ564_RS18835	COG2301	Belongs to the HpcH HpaI aldolase family
DJ564_RS18840	COG0019	diaminopimelate decarboxylase activity
DJ564_RS18845	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
DJ564_RS18850	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
DJ564_RS18855	COG4264	IucA IucC family
DJ564_RS18860	COG2814	Major facilitator Superfamily
DJ564_RS18870	COG1595	DNA-templated transcription, initiation
DJ564_RS18875	COG3712	iron ion homeostasis
DJ564_RS18880	COG4774	siderophore transport
DJ564_RS18890	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DJ564_RS18895	COG1120	ATPase activity
DJ564_RS18905	COG1335	isochorismatase
DJ564_RS18915	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
DJ564_RS18930	COG2814	Major facilitator Superfamily
DJ564_RS18955	COG3459	Glycosyltransferase 36 associated
DJ564_RS18970	COG0318	PFAM AMP-dependent synthetase and ligase
DJ564_RS18990	COG1309	transcriptional regulator
DJ564_RS18995	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DJ564_RS19010	COG0583	DNA-binding transcription factor activity
DJ564_RS19055	COG1012	belongs to the aldehyde dehydrogenase family
DJ564_RS19060	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
DJ564_RS19065	COG0583	DNA-binding transcription factor activity
DJ564_RS19085	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
DJ564_RS19120	COG0579	oxidoreductase
DJ564_RS19150	COG2353	YceI-like domain
DJ564_RS19170	COG0534	Mate efflux family protein
DJ564_RS19180	COG1132	(ABC) transporter
DJ564_RS19215	COG0583	DNA-binding transcription factor activity
DJ564_RS19220	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
DJ564_RS19265	COG3604	Transcriptional regulator
DJ564_RS19275	COG1294	oxidase, subunit
DJ564_RS19295	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
DJ564_RS19300	COG1733	regulation of RNA biosynthetic process
DJ564_RS19335	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
DJ564_RS19340	COG2072	flavoprotein involved in K transport
DJ564_RS19370	COG0589	response to stress
DJ564_RS19375	COG3957	D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase
DJ564_RS19385	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
DJ564_RS19405	COG0589	response to stress
DJ564_RS19420	COG5642	Protein of unknown function (DUF2384)
DJ564_RS19425	COG5654	RES domain protein
DJ564_RS19440	COG1309	transcriptional regulator
DJ564_RS19445	COG1028	Short-chain dehydrogenase reductase Sdr
DJ564_RS19450	COG2267	carboxylic ester hydrolase activity
DJ564_RS19455	COG0596	Alpha beta hydrolase
DJ564_RS19480	COG2211	Major facilitator Superfamily
DJ564_RS19490	COG0673	inositol 2-dehydrogenase activity
DJ564_RS19495	COG1609	Transcriptional regulator
DJ564_RS19500	COG4191	Histidine kinase
DJ564_RS19500	COG0784	Response regulator, receiver
DJ564_RS19515	COG5002	protein histidine kinase activity
DJ564_RS19520	COG0467	Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction
DJ564_RS19575	COG1028	Short-chain dehydrogenase reductase Sdr
DJ564_RS19635	COG1064	alcohol dehydrogenase
DJ564_RS19645	COG1846	Transcriptional regulator
DJ564_RS19650	COG0596	Alpha beta hydrolase
DJ564_RS19655	COG0583	DNA-binding transcription factor activity
DJ564_RS19665	COG2384	SAM-dependent methyltransferase
DJ564_RS19685	COG0640	Transcriptional regulator
DJ564_RS19695	COG2203	Gaf domain
DJ564_RS19695	COG3706	GGDEF domain
DJ564_RS19695	COG5001	Diguanylate cyclase
DJ564_RS19695	COG4251	negative regulation of phosphorylation
DJ564_RS19700	COG3850	Histidine kinase
DJ564_RS19700	COG2205	protein histidine kinase activity
DJ564_RS19700	COG4999	Histidine kinase
DJ564_RS19700	COG3437	response regulator, receiver
DJ564_RS19725	COG1175	transmembrane transport
DJ564_RS19755	COG2957	Belongs to the agmatine deiminase family
DJ564_RS19760	COG0583	DNA-binding transcription factor activity
DJ564_RS19765	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
DJ564_RS19775	COG1215	transferase activity, transferring glycosyl groups
DJ564_RS19825	COG3268	Saccharopine dehydrogenase
DJ564_RS19835	COG1028	Short-chain dehydrogenase reductase Sdr
DJ564_RS19840	COG2207	Transcriptional regulator
DJ564_RS19845	COG4948	Mandelate Racemase Muconate Lactonizing
DJ564_RS19855	COG0583	DNA-binding transcription factor activity
DJ564_RS19870	COG2271	Major facilitator Superfamily
DJ564_RS19895	COG0248	Ppx GppA phosphatase
DJ564_RS19905	COG3011	Protein conserved in bacteria
DJ564_RS19920	COG0596	Alpha beta hydrolase
DJ564_RS19945	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
DJ564_RS19965	COG4773	Receptor
DJ564_RS19985	COG2249	NAD(P)H dehydrogenase (quinone) activity
DJ564_RS19990	COG1960	acyl-CoA dehydrogenase activity
DJ564_RS20015	COG1028	Short-chain dehydrogenase reductase Sdr
DJ564_RS20025	COG3246	L-lysine catabolic process to acetate
DJ564_RS20045	COG2855	membrane
DJ564_RS20135	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
DJ564_RS20140	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
DJ564_RS20145	COG3639	organic phosphonate transmembrane transporter activity
DJ564_RS20150	COG3639	organic phosphonate transmembrane transporter activity
DJ564_RS20160	COG0154	amidase activity
DJ564_RS20165	COG2170	ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity
DJ564_RS20180	COG2610	gluconate transmembrane transporter activity
DJ564_RS20195	COG1309	transcriptional regulator
DJ564_RS20200	COG0697	spore germination
DJ564_RS20235	COG2186	Transcriptional regulator
DJ564_RS20240	COG0277	FAD linked oxidase domain protein
DJ564_RS20245	COG0277	FAD linked oxidase domain protein
DJ564_RS20250	COG0247	lactate metabolic process
DJ564_RS20255	COG3193	protein, possibly involved in utilization of glycolate and propanediol
DJ564_RS20335	COG2205	protein histidine kinase activity
DJ564_RS20350	COG4589	Belongs to the CDS family
DJ564_RS20360	COG3220	belongs to the UPF0276 family
DJ564_RS20375	COG4106	trans-aconitate 2-methyltransferase activity
DJ564_RS20380	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
DJ564_RS20385	COG0583	DNA-binding transcription factor activity
DJ564_RS20390	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
DJ564_RS20465	COG0519	Catalyzes the synthesis of GMP from XMP
DJ564_RS20465	COG0518	GMP synthase (glutamine-hydrolyzing) activity
DJ564_RS20515	COG0531	amino acid
DJ564_RS20530	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
DJ564_RS20545	COG3706	GGDEF domain
DJ564_RS20555	COG2267	carboxylic ester hydrolase activity
DJ564_RS20560	COG5383	Protein conserved in bacteria
DJ564_RS20660	COG1136	(ABC) transporter
DJ564_RS20710	COG0463	Glycosyl transferase, family 2
DJ564_RS20720	COG0726	polysaccharide deacetylase
DJ564_RS20755	COG0500	methyltransferase
DJ564_RS20765	COG2204	response regulator
DJ564_RS20770	COG4191	Histidine kinase
DJ564_RS20785	COG4191	Histidine kinase
DJ564_RS20860	COG4796	Type ii and iii secretion system protein
DJ564_RS20890	COG0745	RESPONSE REGULATOR receiver
DJ564_RS20895	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DJ564_RS20925	COG1196	nuclear chromosome segregation
DJ564_RS20925	COG0739	heme binding
DJ564_RS20925	COG0741	lytic transglycosylase activity
DJ564_RS20935	COG1459	type II secretion system
DJ564_RS20945	COG0583	DNA-binding transcription factor activity
DJ564_RS20970	COG1335	isochorismatase
DJ564_RS20975	COG1574	metal-dependent hydrolase with the TIM-barrel fold
DJ564_RS21005	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
DJ564_RS21010	COG1609	Transcriptional regulator
DJ564_RS21010	COG2207	Transcriptional regulator
DJ564_RS21015	COG0753	catalase activity
DJ564_RS21045	COG1741	Belongs to the pirin family
DJ564_RS21065	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
DJ564_RS21070	COG1349	DNA-binding transcription factor activity
DJ564_RS21110	COG1250	3-hydroxyacyl-CoA dehydrogenase
DJ564_RS21115	COG1309	transcriptional regulator
DJ564_RS21125	COG1690	Belongs to the RtcB family
DJ564_RS21140	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
DJ564_RS21180	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DJ564_RS21185	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
DJ564_RS21190	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
DJ564_RS21195	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
DJ564_RS21195	COG0473	3-isopropylmalate dehydrogenase activity
DJ564_RS21200	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
DJ564_RS21210	COG2814	Major facilitator Superfamily
DJ564_RS21225	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DJ564_RS21240	COG0583	DNA-binding transcription factor activity
DJ564_RS21255	COG4638	Rieske (2fe-2S)
DJ564_RS21260	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
DJ564_RS21270	COG1028	Short-chain dehydrogenase reductase Sdr
DJ564_RS21295	COG4638	Rieske (2fe-2S)
DJ564_RS21300	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
DJ564_RS21305	COG0543	2 iron, 2 sulfur cluster binding
DJ564_RS21305	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DJ564_RS21325	COG1129	ABC transporter
DJ564_RS21340	COG1250	3-hydroxyacyl-CoA dehydrogenase
DJ564_RS21345	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
DJ564_RS21360	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DJ564_RS21370	COG1028	Short-chain dehydrogenase reductase Sdr
DJ564_RS21380	COG4638	Rieske (2fe-2S)
DJ564_RS21400	COG0154	amidase activity
DJ564_RS21425	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
DJ564_RS21445	COG2814	Major facilitator Superfamily
DJ564_RS21470	COG0776	regulation of translation
DJ564_RS21475	COG0072	phenylalanine-tRNA ligase activity
DJ564_RS21480	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
DJ564_RS21485	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
DJ564_RS21490	COG0291	Belongs to the bacterial ribosomal protein bL35 family
DJ564_RS21495	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
DJ564_RS21500	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
DJ564_RS21510	COG1278	Cold shock
DJ564_RS21535	COG1869	D-ribose catabolic process
DJ564_RS21540	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DJ564_RS21545	COG1609	Transcriptional regulator
DJ564_RS21550	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJ564_RS21555	COG1129	ABC transporter
DJ564_RS21595	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
DJ564_RS21610	COG0840	transmembrane signaling receptor activity
DJ564_RS21620	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DJ564_RS21625	COG3608	succinylglutamate desuccinylase aspartoacylase
DJ564_RS21625	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
DJ564_RS21630	COG2010	Cytochrome c
DJ564_RS21650	COG2271	Major facilitator Superfamily
DJ564_RS21655	COG4948	Mandelate Racemase Muconate Lactonizing
DJ564_RS21665	COG1012	belongs to the aldehyde dehydrogenase family
DJ564_RS21670	COG4774	siderophore transport
DJ564_RS21675	COG3712	iron ion homeostasis
DJ564_RS21720	COG1286	toxin biosynthetic process
DJ564_RS21725	COG3087	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
DJ564_RS21730	COG0285	dihydrofolate synthase activity
DJ564_RS21735	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
DJ564_RS21740	COG0135	phosphoribosylanthranilate isomerase activity
DJ564_RS21765	COG0473	3-isopropylmalate dehydrogenase activity
DJ564_RS21770	COG2226	methyltransferase
DJ564_RS21775	COG0066	3-isopropylmalate dehydratase activity
DJ564_RS21780	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
DJ564_RS21800	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
DJ564_RS21810	COG0596	Alpha beta hydrolase
DJ564_RS21840	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
DJ564_RS21855	COG0556	nucleotide-excision repair
DJ564_RS21895	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
DJ564_RS21920	COG2233	PERMEase
DJ564_RS21940	COG0708	Exodeoxyribonuclease III
DJ564_RS21945	COG5001	Diguanylate cyclase
DJ564_RS21955	COG1063	alcohol dehydrogenase
DJ564_RS22000	COG2056	Na+-H+ antiporter family
DJ564_RS22010	COG0840	transmembrane signaling receptor activity
DJ564_RS22040	COG0720	synthase
DJ564_RS22050	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
DJ564_RS22055	COG0402	S-adenosylhomocysteine deaminase activity
DJ564_RS22060	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
DJ564_RS22065	COG2207	Transcriptional regulator
DJ564_RS22075	COG2223	nitrite transmembrane transporter activity
DJ564_RS22080	COG4772	TonB-dependent receptor
DJ564_RS22090	COG1595	DNA-templated transcription, initiation
DJ564_RS22095	COG1012	belongs to the aldehyde dehydrogenase family
DJ564_RS22110	COG0840	transmembrane signaling receptor activity
DJ564_RS22115	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
DJ564_RS22140	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
DJ564_RS22170	COG2207	Transcriptional regulator
DJ564_RS22175	COG3327	negative regulation of DNA-templated transcription, initiation
DJ564_RS22185	COG1024	Enoyl-CoA hydratase
DJ564_RS22190	COG1024	Enoyl-CoA hydratase
DJ564_RS22195	COG1250	3-hydroxyacyl-CoA dehydrogenase
DJ564_RS22200	COG2050	protein possibly involved in aromatic compounds catabolism
DJ564_RS22205	COG0183	Belongs to the thiolase family
DJ564_RS22225	COG3396	Phenylacetate-CoA oxygenase
DJ564_RS22230	COG3460	Phenylacetate-CoA oxygenase
DJ564_RS22235	COG3396	Phenylacetate-CoA oxygenase
DJ564_RS22240	COG2151	metal-sulfur cluster biosynthetic enzyme
DJ564_RS22245	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DJ564_RS22255	COG3162	membrane
DJ564_RS22270	COG2030	dehydratase
DJ564_RS22270	COG1012	belongs to the aldehyde dehydrogenase family
DJ564_RS22290	COG1024	Enoyl-CoA hydratase
DJ564_RS22295	COG0183	Belongs to the thiolase family
DJ564_RS22310	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
DJ564_RS22335	COG0656	L-ascorbic acid biosynthetic process
DJ564_RS22340	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DJ564_RS22340	COG2205	protein histidine kinase activity
DJ564_RS22345	COG2197	response regulator
DJ564_RS22355	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
DJ564_RS22375	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DJ564_RS22380	COG0577	efflux transmembrane transporter activity
DJ564_RS22380	COG1136	(ABC) transporter
DJ564_RS22430	COG0657	acetylesterase activity
DJ564_RS22445	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
DJ564_RS22455	COG3387	PFAM Glycoside hydrolase 15-related
DJ564_RS22470	COG4977	sequence-specific DNA binding
DJ564_RS22535	COG1404	Belongs to the peptidase S8 family
DJ564_RS22540	COG1132	(ABC) transporter
DJ564_RS22545	COG3284	Transcriptional regulator
DJ564_RS22550	COG0768	penicillin binding
DJ564_RS22605	COG4221	oxidoreductase activity
DJ564_RS22620	COG0583	DNA-binding transcription factor activity
DJ564_RS22645	COG0431	NADPH-dependent FMN reductase
DJ564_RS22650	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
DJ564_RS22660	COG3829	transcription factor binding
DJ564_RS22680	COG0596	Alpha beta hydrolase
DJ564_RS22685	COG0583	DNA-binding transcription factor activity
DJ564_RS22695	COG0066	3-isopropylmalate dehydratase activity
DJ564_RS22700	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
DJ564_RS22730	COG1121	(ABC) transporter
DJ564_RS22735	COG1108	ABC-type Mn2 Zn2 transport systems permease components
DJ564_RS22760	COG0642	Histidine kinase
DJ564_RS22775	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
DJ564_RS22810	COG1309	transcriptional regulator
DJ564_RS22825	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
DJ564_RS22830	COG1960	acyl-CoA dehydrogenase activity
DJ564_RS22835	COG1024	Enoyl-CoA hydratase
DJ564_RS22850	COG3123	guanosine phosphorylase activity
DJ564_RS22870	COG3851	Histidine kinase
DJ564_RS22875	COG2197	response regulator
DJ564_RS22880	COG1597	lipid kinase activity
DJ564_RS22895	COG0303	'Molybdopterin
DJ564_RS22900	COG0521	Mo-molybdopterin cofactor biosynthetic process
DJ564_RS22905	COG0746	molybdenum cofactor guanylyltransferase activity
DJ564_RS22915	COG0564	pseudouridine synthase activity
DJ564_RS22935	COG0004	ammonium transporteR
DJ564_RS22955	COG4943	cyclic-guanylate-specific phosphodiesterase activity
DJ564_RS22965	COG2204	response regulator
DJ564_RS22970	COG2197	response regulator
DJ564_RS22975	COG2205	protein histidine kinase activity
DJ564_RS22975	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DJ564_RS22980	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
DJ564_RS22980	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
DJ564_RS22985	COG1956	GAF domain-containing protein
DJ564_RS22995	COG2205	protein histidine kinase activity
DJ564_RS22995	COG5002	protein histidine kinase activity
DJ564_RS22995	COG0784	Response regulator, receiver
DJ564_RS23000	COG1846	Transcriptional regulator
DJ564_RS23005	COG0386	Belongs to the glutathione peroxidase family
DJ564_RS23010	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
DJ564_RS23015	COG0436	Aminotransferase
DJ564_RS23020	COG0501	Belongs to the peptidase M48B family
DJ564_RS23025	COG0500	methyltransferase
DJ564_RS23030	COG3384	dioxygenase
DJ564_RS23045	COG1024	Enoyl-CoA hydratase
DJ564_RS23055	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
DJ564_RS23060	COG3214	Protein conserved in bacteria
DJ564_RS23070	COG0583	DNA-binding transcription factor activity
DJ564_RS23080	COG0583	DNA-binding transcription factor activity
DJ564_RS23085	COG1846	Transcriptional regulator
DJ564_RS23090	COG1764	response to oxidative stress
DJ564_RS23100	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
DJ564_RS23115	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
DJ564_RS23125	COG0589	response to stress
DJ564_RS23135	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
DJ564_RS23165	COG1376	ErfK ybiS ycfS ynhG family protein
DJ564_RS23205	COG4181	ATPase activity
DJ564_RS23210	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
DJ564_RS23225	COG2259	Doxx family
DJ564_RS23230	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
DJ564_RS23235	COG0084	hydrolase, TatD family'
DJ564_RS23275	COG0745	RESPONSE REGULATOR receiver
DJ564_RS23280	COG2205	protein histidine kinase activity
DJ564_RS23285	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
DJ564_RS23295	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
DJ564_RS23330	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
DJ564_RS23335	COG4221	oxidoreductase activity
DJ564_RS23360	COG0463	Glycosyl transferase, family 2
DJ564_RS23380	COG1555	photosystem II stabilization
DJ564_RS23390	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
DJ564_RS23400	COG0776	regulation of translation
DJ564_RS23410	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
DJ564_RS23420	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
DJ564_RS23435	COG0438	transferase activity, transferring glycosyl groups
DJ564_RS23440	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DJ564_RS23460	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
DJ564_RS23470	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
DJ564_RS23490	COG0776	regulation of translation
DJ564_RS23505	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
DJ564_RS23510	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
DJ564_RS23515	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
DJ564_RS23525	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
DJ564_RS23535	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
DJ564_RS23540	COG0402	S-adenosylhomocysteine deaminase activity
DJ564_RS23545	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
DJ564_RS23550	COG0546	phosphoglycolate phosphatase activity
DJ564_RS23555	COG1028	Short-chain dehydrogenase reductase Sdr
DJ564_RS23570	COG5002	protein histidine kinase activity
DJ564_RS23570	COG5001	Diguanylate cyclase
DJ564_RS23585	COG1054	Belongs to the UPF0176 family
DJ564_RS23590	COG0271	Belongs to the BolA IbaG family
DJ564_RS23600	COG0114	fumarate hydratase activity
DJ564_RS23605	COG0697	spore germination
DJ564_RS23615	COG0183	Belongs to the thiolase family
DJ564_RS23620	COG2326	polyphosphate kinase activity
DJ564_RS23625	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
DJ564_RS23625	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DJ564_RS23635	COG0367	asparagine synthase
DJ564_RS23640	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
DJ564_RS23640	COG0189	ligase activity
DJ564_RS23650	COG3089	Belongs to the UPF0270 family
DJ564_RS23655	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
DJ564_RS23660	COG1742	UPF0060 membrane protein
DJ564_RS23675	COG1368	sulfuric ester hydrolase activity
DJ564_RS23695	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DJ564_RS23700	COG2885	chlorophyll binding
DJ564_RS23730	COG2207	Transcriptional regulator
DJ564_RS23735	COG1064	alcohol dehydrogenase
DJ564_RS23740	COG1414	Transcriptional regulator
DJ564_RS23745	COG2271	Major facilitator Superfamily
DJ564_RS23750	COG4948	Mandelate Racemase Muconate Lactonizing
DJ564_RS23755	COG0800	Aldolase
DJ564_RS23760	COG3734	2-keto-3-deoxy-galactonokinase
DJ564_RS23790	COG1418	mRNA catabolic process
DJ564_RS23810	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
DJ564_RS23820	COG1397	ADP-ribosylglycohydrolase
DJ564_RS23825	COG2188	Transcriptional regulator
DJ564_RS23830	COG1172	Belongs to the binding-protein-dependent transport system permease family
DJ564_RS23835	COG1129	ABC transporter
DJ564_RS23840	COG1879	ABC-type sugar transport system periplasmic component
DJ564_RS23845	COG1028	Short-chain dehydrogenase reductase Sdr
DJ564_RS23855	COG2186	Transcriptional regulator
DJ564_RS23870	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
DJ564_RS23880	COG0084	hydrolase, TatD family'
DJ564_RS23895	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
DJ564_RS23900	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
DJ564_RS23910	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
DJ564_RS23915	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
DJ564_RS23930	COG0416	fatty acid biosynthetic process
DJ564_RS23935	COG0333	Belongs to the bacterial ribosomal protein bL32 family
DJ564_RS23945	COG0424	maF-like protein
DJ564_RS23950	COG0616	signal peptide processing
DJ564_RS23950	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
DJ564_RS23955	COG0546	phosphoglycolate phosphatase activity
DJ564_RS23965	COG1530	ribonuclease E activity
DJ564_RS23980	COG3608	succinylglutamate desuccinylase aspartoacylase
DJ564_RS23980	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
DJ564_RS23995	COG0812	UDP-N-acetylmuramate dehydrogenase activity
DJ564_RS24000	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
DJ564_RS24005	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
DJ564_RS24010	COG2835	tetraacyldisaccharide 4'-kinase activity
DJ564_RS24015	COG1663	tetraacyldisaccharide 4'-kinase activity
DJ564_RS24020	COG0848	biopolymer transport protein
DJ564_RS24025	COG0811	peptide transport
DJ564_RS24030	COG0658	competence protein
DJ564_RS24030	COG2333	competence protein COMEC
DJ564_RS24040	COG0842	Transport permease protein
DJ564_RS24045	COG1131	(ABC) transporter
DJ564_RS24050	COG0625	glutathione transferase activity
DJ564_RS24060	COG1960	acyl-CoA dehydrogenase activity
DJ564_RS24075	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
DJ564_RS24125	COG0840	transmembrane signaling receptor activity
DJ564_RS24130	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
DJ564_RS24135	COG1028	Short-chain dehydrogenase reductase Sdr
DJ564_RS24140	COG2130	NADP-dependent
DJ564_RS24145	COG0284	orotidine-5'-phosphate decarboxylase activity
DJ564_RS24170	COG0628	permease
DJ564_RS24180	COG0625	glutathione transferase activity
DJ564_RS24200	COG1022	Amp-dependent synthetase and ligase
DJ564_RS24220	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
DJ564_RS24225	COG4771	TonB-dependent receptor
DJ564_RS24235	COG2205	protein histidine kinase activity
DJ564_RS24235	COG0784	Response regulator, receiver
DJ564_RS24235	COG5002	protein histidine kinase activity
DJ564_RS24240	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
DJ564_RS24255	COG3122	Protein conserved in bacteria
DJ564_RS24260	COG3956	TIGRFAM MazG family protein
DJ564_RS24265	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
DJ564_RS24270	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
DJ564_RS24290	COG0784	Response regulator, receiver
DJ564_RS24290	COG5002	protein histidine kinase activity
DJ564_RS24290	COG2205	protein histidine kinase activity
DJ564_RS24295	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
DJ564_RS24315	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
DJ564_RS24320	COG1393	Belongs to the ArsC family
DJ564_RS24335	COG2818	Glycosylase
DJ564_RS24340	COG0037	tRNA processing
DJ564_RS24355	COG3091	SprT-like family
DJ564_RS24360	COG1804	L-carnitine dehydratase bile acid-inducible protein F
DJ564_RS24370	COG1917	Cupin 2, conserved barrel domain protein
DJ564_RS24370	COG4977	sequence-specific DNA binding
DJ564_RS24405	COG2205	protein histidine kinase activity
DJ564_RS24410	COG0745	RESPONSE REGULATOR receiver
DJ564_RS24425	COG1749	Flagellar hook protein flgE
DJ564_RS24440	COG1815	bacterial-type flagellum-dependent cell motility
DJ564_RS24445	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
DJ564_RS24450	COG0784	Response regulator, receiver
DJ564_RS24450	COG0835	chemotaxis
DJ564_RS24460	COG2747	anti-sigma28 factor FlgM
DJ564_RS24470	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
DJ564_RS24475	COG0477	Major facilitator Superfamily
DJ564_RS24530	COG1192	Involved in chromosome partitioning
DJ564_RS24540	COG0840	transmembrane signaling receptor activity
DJ564_RS24545	COG0745	RESPONSE REGULATOR receiver
DJ564_RS24555	COG2198	Histidine kinase
DJ564_RS24555	COG0643	Histidine kinase
DJ564_RS24565	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
DJ564_RS24575	COG2201	protein-glutamate methylesterase activity
DJ564_RS24580	COG0835	chemotaxis
DJ564_RS24585	COG0840	transmembrane signaling receptor activity
DJ564_RS24585	COG3290	protein histidine kinase activity
DJ564_RS24590	COG2197	response regulator
DJ564_RS24600	COG1366	Belongs to the anti-sigma-factor antagonist family
DJ564_RS24600	COG2202	Pas domain
DJ564_RS24630	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
DJ564_RS24710	COG2885	chlorophyll binding
DJ564_RS24750	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
DJ564_RS24765	COG2239	Acts as a magnesium transporter
DJ564_RS24790	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
DJ564_RS24795	COG0527	aspartate kinase activity
DJ564_RS24800	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
DJ564_RS24805	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
DJ564_RS24810	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
DJ564_RS24815	COG2988	succinylglutamate desuccinylase activity
DJ564_RS24825	COG3724	N-succinylarginine dihydrolase activity
DJ564_RS24830	COG1012	belongs to the aldehyde dehydrogenase family
DJ564_RS24845	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
DJ564_RS24885	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
DJ564_RS24895	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
DJ564_RS24920	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
DJ564_RS24925	COG3727	T/G mismatch-specific endonuclease activity
DJ564_RS24995	COG0504	CTP synthase activity
DJ564_RS25000	COG2329	Antibiotic biosynthesis monooxygenase
DJ564_RS25010	COG0584	glycerophosphoryl diester phosphodiesterase
DJ564_RS25030	COG0306	phosphate transporter
DJ564_RS25050	COG0583	DNA-binding transcription factor activity
DJ564_RS25055	COG1028	Short-chain dehydrogenase reductase Sdr
DJ564_RS25065	COG0583	DNA-binding transcription factor activity
DJ564_RS25070	COG4941	Belongs to the sigma-70 factor family
DJ564_RS25080	COG3795	YCII-related domain
DJ564_RS25090	COG0456	acetyltransferase
DJ564_RS25115	COG0436	Aminotransferase
DJ564_RS25125	COG3265	gluconokinase activity
DJ564_RS25130	COG1609	Transcriptional regulator
DJ564_RS25135	COG0583	DNA-binding transcription factor activity
DJ564_RS25145	COG0625	glutathione transferase activity
DJ564_RS25160	COG0583	DNA-binding transcription factor activity
DJ564_RS25175	COG1595	DNA-templated transcription, initiation
DJ564_RS25200	COG0242	peptide deformylase activity
DJ564_RS25205	COG1295	ribonuclease BN
DJ564_RS25210	COG3237	CsbD-like
DJ564_RS25220	COG0318	PFAM AMP-dependent synthetase and ligase
DJ564_RS25230	COG2267	carboxylic ester hydrolase activity
DJ564_RS25235	COG2030	dehydratase
DJ564_RS25260	COG3530	Putative quorum-sensing-regulated virulence factor
DJ564_RS25265	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
DJ564_RS25275	COG0800	Aldolase
DJ564_RS25290	COG1737	Transcriptional regulator
DJ564_RS25295	COG0676	glucose-6-phosphate 1-epimerase activity
DJ564_RS25320	COG1175	transmembrane transport
DJ564_RS25325	COG1653	transport
DJ564_RS25360	COG1803	Methylglyoxal synthase
DJ564_RS25370	COG3712	iron ion homeostasis
DJ564_RS25375	COG4771	TonB-dependent receptor
DJ564_RS25390	COG2832	Protein of unknown function (DUF454)
DJ564_RS25395	COG0840	transmembrane signaling receptor activity
DJ564_RS25405	COG1804	L-carnitine dehydratase bile acid-inducible protein F
DJ564_RS25450	COG0509	glycine decarboxylation via glycine cleavage system
DJ564_RS25455	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
DJ564_RS25455	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
DJ564_RS25460	COG1760	l-serine dehydratase
DJ564_RS25465	COG0404	The glycine cleavage system catalyzes the degradation of glycine
DJ564_RS25470	COG1278	Cold shock
DJ564_RS25480	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
DJ564_RS25490	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
DJ564_RS25495	COG0602	queuosine metabolic process
DJ564_RS25500	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
DJ564_RS25505	COG2885	chlorophyll binding
DJ564_RS25510	COG0823	Involved in the tonB-independent uptake of proteins
DJ564_RS25530	COG0824	Thioesterase
DJ564_RS25535	COG2255	four-way junction helicase activity
DJ564_RS25540	COG0632	four-way junction helicase activity
DJ564_RS25545	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
DJ564_RS25550	COG0217	transcriptional regulatory protein
DJ564_RS25555	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
DJ564_RS25570	COG0783	Belongs to the Dps family
DJ564_RS25580	COG2900	Belongs to the SlyX family
DJ564_RS25595	COG0668	transmembrane transport
DJ564_RS25605	COG1666	GTP binding
DJ564_RS25615	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DJ564_RS25615	COG4191	Histidine kinase
DJ564_RS25620	COG2096	Adenosyltransferase
DJ564_RS25635	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
DJ564_RS25640	COG0653	protein targeting
DJ564_RS25655	COG0433	COG0433 Predicted ATPase
DJ564_RS25665	COG0438	transferase activity, transferring glycosyl groups
DJ564_RS25665	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
DJ564_RS25695	COG2925	Exonuclease
DJ564_RS25720	COG0714	Associated with various cellular activities
DJ564_RS25780	COG0469	pyruvate kinase activity
DJ564_RS25785	COG1024	Enoyl-CoA hydratase
DJ564_RS25790	COG0633	Ferredoxin
DJ564_RS25795	COG3706	GGDEF domain
DJ564_RS25820	COG4191	Histidine kinase
DJ564_RS25830	COG0477	Major facilitator Superfamily
DJ564_RS25845	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
DJ564_RS25850	COG2207	Transcriptional regulator
DJ564_RS25855	COG3842	ATPase activity
DJ564_RS25875	COG1012	belongs to the aldehyde dehydrogenase family
DJ564_RS25885	COG0583	DNA-binding transcription factor activity
DJ564_RS25890	COG2910	NAD(P)H-binding
DJ564_RS25900	COG0583	DNA-binding transcription factor activity
DJ564_RS25920	COG0477	Major facilitator Superfamily
DJ564_RS25935	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DJ564_RS25940	COG0583	DNA-binding transcription factor activity
DJ564_RS25955	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
DJ564_RS25995	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DJ564_RS26000	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
DJ564_RS26010	COG3642	lipopolysaccharide core region biosynthetic process
DJ564_RS26020	COG0642	Histidine kinase
DJ564_RS26035	COG0459	protein refolding
DJ564_RS26040	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
DJ564_RS26055	COG1028	Short-chain dehydrogenase reductase Sdr
DJ564_RS26060	COG0489	protein tyrosine kinase activity
DJ564_RS26065	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DJ564_RS26065	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
DJ564_RS26070	COG4657	Part of a membrane complex involved in electron transport
DJ564_RS26075	COG2878	Part of a membrane complex involved in electron transport
DJ564_RS26080	COG4658	electron transport chain
DJ564_RS26095	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
DJ564_RS26105	COG2197	response regulator
DJ564_RS26115	COG0137	argininosuccinate synthase activity
DJ564_RS26125	COG0418	dihydroorotase activity
DJ564_RS26130	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
DJ564_RS26135	COG0450	alkyl hydroperoxide reductase
DJ564_RS26150	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
DJ564_RS26155	COG0243	molybdopterin cofactor binding
DJ564_RS26170	COG3842	ATPase activity
DJ564_RS26180	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
DJ564_RS26190	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
DJ564_RS26205	COG0583	DNA-binding transcription factor activity
DJ564_RS26210	COG0477	Major facilitator Superfamily
DJ564_RS26245	COG0814	amino acid
DJ564_RS26250	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DJ564_RS26255	COG0765	amino acid transport
DJ564_RS26260	COG0765	amino acid transport
DJ564_RS26265	COG1126	abc transporter atp-binding protein
DJ564_RS26300	COG2076	Multidrug Resistance protein
DJ564_RS26320	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
DJ564_RS26335	COG4191	Histidine kinase
DJ564_RS26340	COG2204	response regulator
DJ564_RS26355	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
DJ564_RS26360	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
DJ564_RS26365	COG0583	DNA-binding transcription factor activity
DJ564_RS26375	COG1280	lysine exporter protein (LysE YggA)
DJ564_RS26380	COG0494	nUDIX hydrolase
DJ564_RS26385	COG2204	response regulator
DJ564_RS26390	COG3300	MHYT domain
DJ564_RS26390	COG5001	Diguanylate cyclase
DJ564_RS26400	COG1858	cytochrome C peroxidase
DJ564_RS26420	COG0531	amino acid
DJ564_RS26430	COG2197	response regulator
DJ564_RS26435	COG0069	glutamate synthase activity
DJ564_RS26440	COG2246	polysaccharide biosynthetic process
DJ564_RS26455	COG3340	Belongs to the peptidase S51 family
DJ564_RS26470	COG1113	amino acid transport
DJ564_RS26520	COG1695	Transcriptional regulator
DJ564_RS26525	COG2375	cellular response to nickel ion
DJ564_RS26540	COG4628	conserved protein (DUF2132)
DJ564_RS26565	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
DJ564_RS26580	COG4106	trans-aconitate 2-methyltransferase activity
DJ564_RS26585	COG0500	methyltransferase
DJ564_RS26590	COG0590	tRNA wobble adenosine to inosine editing
DJ564_RS26605	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
DJ564_RS26605	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
DJ564_RS26610	COG4580	involved in the transport of maltose and maltodextrins
DJ564_RS26615	COG0366	Alpha amylase catalytic
DJ564_RS26620	COG1263	PTS System
DJ564_RS26620	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
DJ564_RS26625	COG2188	Transcriptional regulator
DJ564_RS26635	COG0519	Catalyzes the synthesis of GMP from XMP
DJ564_RS26635	COG0518	GMP synthase (glutamine-hydrolyzing) activity
DJ564_RS26660	COG1570	exodeoxyribonuclease VII activity
DJ564_RS26665	COG0739	heme binding
DJ564_RS26675	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
DJ564_RS26685	COG0436	Aminotransferase
DJ564_RS26695	COG1160	GTP binding
DJ564_RS26710	COG0124	histidyl-tRNA synthetase
DJ564_RS26715	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
DJ564_RS26720	COG1426	Protein conserved in bacteria
DJ564_RS26730	COG0820	rRNA (adenine-C2-)-methyltransferase activity
DJ564_RS26735	COG0105	UTP biosynthetic process
DJ564_RS26745	COG0633	Ferredoxin
DJ564_RS26750	COG0443	Heat shock 70 kDa protein
DJ564_RS26755	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
DJ564_RS26760	COG0316	Belongs to the HesB IscA family
DJ564_RS26770	COG1104	cysteine desulfurase activity
DJ564_RS26780	COG1045	serine acetyltransferase
DJ564_RS26800	COG3134	Outer membrane lipoprotein
DJ564_RS26815	COG1862	Preprotein translocase
DJ564_RS26820	COG0343	queuine tRNA-ribosyltransferase activity
DJ564_RS26825	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
DJ564_RS26850	COG0338	D12 class N6 adenine-specific DNA methyltransferase
DJ564_RS26880	COG3383	formate dehydrogenase (NAD+) activity
DJ564_RS26905	COG2853	Lipoprotein
DJ564_RS26930	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
DJ564_RS26935	COG0583	DNA-binding transcription factor activity
DJ564_RS26950	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
DJ564_RS26960	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
DJ564_RS26965	COG0745	RESPONSE REGULATOR receiver
DJ564_RS26990	COG2186	Transcriptional regulator
DJ564_RS27005	COG0109	protoheme IX farnesyltransferase activity
DJ564_RS27020	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
DJ564_RS27025	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
DJ564_RS27035	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
DJ564_RS27040	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DJ564_RS27040	COG1017	nitric oxide dioxygenase activity
DJ564_RS27045	COG3604	Transcriptional regulator
DJ564_RS27060	COG0456	acetyltransferase
DJ564_RS27105	COG5002	protein histidine kinase activity
DJ564_RS27120	COG5001	Diguanylate cyclase
DJ564_RS27120	COG4251	negative regulation of phosphorylation
DJ564_RS27120	COG3706	GGDEF domain
DJ564_RS27120	COG2203	Gaf domain
DJ564_RS27125	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
DJ564_RS27130	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
DJ564_RS27145	COG1181	Belongs to the D-alanine--D-alanine ligase family
DJ564_RS27150	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
DJ564_RS27155	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
DJ564_RS27160	COG0772	Belongs to the SEDS family
DJ564_RS27165	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
DJ564_RS27170	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
DJ564_RS27175	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
DJ564_RS27180	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
DJ564_RS27195	COG0275	rRNA processing
DJ564_RS27200	COG2001	Belongs to the MraZ family
DJ564_RS27215	COG3107	peptidoglycan biosynthetic process
DJ564_RS27220	COG0792	nuclease activity
DJ564_RS27225	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
DJ564_RS27230	COG2823	Periplasmic or secreted lipoprotein
DJ564_RS27235	COG2969	positive regulation of protein catabolic process
DJ564_RS27240	COG0625	glutathione transferase activity
DJ564_RS27245	COG2857	Cytochrome c1
DJ564_RS27250	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
DJ564_RS27255	COG0723	plastoquinol--plastocyanin reductase activity
DJ564_RS27260	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
DJ564_RS27265	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
DJ564_RS27270	COG0667	Aldo Keto reductase
DJ564_RS27275	COG1960	acyl-CoA dehydrogenase activity
DJ564_RS27285	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
DJ564_RS27290	COG0180	Tryptophanyl-tRNA synthetase
DJ564_RS27310	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
DJ564_RS27315	COG2909	trisaccharide binding
DJ564_RS27330	COG0318	PFAM AMP-dependent synthetase and ligase
DJ564_RS27335	COG1280	lysine exporter protein (LysE YggA)
DJ564_RS27340	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
DJ564_RS27345	COG2813	Specifically methylates the guanine in position
DJ564_RS27350	COG2119	membrane
DJ564_RS27355	COG0501	Belongs to the peptidase M48B family
DJ564_RS27360	COG0840	transmembrane signaling receptor activity
DJ564_RS27365	COG2135	peptidase activity
DJ564_RS27420	COG0659	secondary active sulfate transmembrane transporter activity
DJ564_RS27430	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
DJ564_RS27435	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
DJ564_RS27445	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
DJ564_RS27450	COG1090	epimerase
DJ564_RS27455	COG3380	Catalyzes the oxidation of the 1,2-dihydro- and 1,6- dihydro- isomeric forms of beta-NAD(P) back to beta-NAD(P) . May serve to protect primary metabolism dehydrogenases from inhibition by the 1,2-dihydro- and 1,6-dihydro-beta-NAD(P) isomers
DJ564_RS27470	COG0789	Transcriptional regulator
DJ564_RS27475	COG0415	Belongs to the DNA photolyase family
DJ564_RS27485	COG4221	oxidoreductase activity
DJ564_RS27490	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
DJ564_RS27500	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
DJ564_RS27520	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
DJ564_RS27525	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
DJ564_RS27535	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
DJ564_RS27540	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
DJ564_RS27550	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
DJ564_RS27555	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
DJ564_RS27565	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
DJ564_RS27570	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
DJ564_RS27575	COG0193	aminoacyl-tRNA hydrolase activity
DJ564_RS27580	COG0012	GTP binding
DJ564_RS27585	COG2223	nitrite transmembrane transporter activity
DJ564_RS27605	COG0405	Gamma-glutamyltransferase
DJ564_RS27615	COG1181	Belongs to the D-alanine--D-alanine ligase family
DJ564_RS27630	COG0662	Cupin 2, conserved barrel domain protein
DJ564_RS27635	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
DJ564_RS27650	COG2031	fatty acid transporter
DJ564_RS27655	COG0443	Heat shock 70 kDa protein
DJ564_RS27675	COG0288	reversible hydration of carbon dioxide
DJ564_RS27685	COG0456	acetyltransferase
DJ564_RS27710	COG3008	intermembrane lipid transfer
DJ564_RS27715	COG2995	paraquat-inducible protein a
DJ564_RS27720	COG2995	paraquat-inducible protein a
DJ564_RS27755	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
DJ564_RS27760	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
DJ564_RS27765	COG1183	phosphatidylcholine synthase activity
DJ564_RS27770	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
DJ564_RS27780	COG0028	Belongs to the TPP enzyme family
DJ564_RS27800	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
DJ564_RS27825	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
DJ564_RS27830	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
DJ564_RS27835	COG4558	Periplasmic binding protein
DJ564_RS27845	COG1489	DNA binding
DJ564_RS27850	COG0436	Aminotransferase
DJ564_RS27855	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
DJ564_RS27860	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
DJ564_RS27870	COG4191	Histidine kinase
DJ564_RS27875	COG2204	response regulator
DJ564_RS27895	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
DJ564_RS27900	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
DJ564_RS27910	COG0166	Belongs to the GPI family
DJ564_RS27920	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
DJ564_RS27925	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
DJ564_RS27945	COG2823	Periplasmic or secreted lipoprotein
DJ564_RS27965	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
DJ564_RS27970	COG0237	dephospho-CoA kinase activity
DJ564_RS27975	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
DJ564_RS28000	COG3135	benzoate transporter
DJ564_RS28005	COG2814	Major facilitator Superfamily
DJ564_RS28030	COG1252	NADH dehydrogenase
DJ564_RS28065	COG0542	response to heat
DJ564_RS28100	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
DJ564_RS28140	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
DJ564_RS28145	COG1047	Peptidyl-prolyl cis-trans
DJ564_RS28150	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
DJ564_RS28155	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
DJ564_RS28160	COG0196	riboflavin kinase activity
DJ564_RS28175	COG0268	Binds directly to 16S ribosomal RNA
DJ564_RS28180	COG3045	CreA protein
DJ564_RS28185	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
DJ564_RS28190	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
DJ564_RS28195	COG0211	Belongs to the bacterial ribosomal protein bL27 family
DJ564_RS28200	COG0261	This protein binds to 23S rRNA in the presence of protein L20
DJ564_RS28205	COG0142	geranyltranstransferase activity
DJ564_RS28210	COG2824	Alkylphosphonate utilization operon protein PhnA
DJ564_RS28215	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
DJ564_RS28225	COG0545	Peptidyl-prolyl cis-trans isomerase
DJ564_RS28235	COG2862	Uncharacterized protein family, UPF0114
DJ564_RS28250	COG1067	ATP-dependent peptidase activity
DJ564_RS28270	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
DJ564_RS28275	COG0488	(ABC) transporter
DJ564_RS28285	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
DJ564_RS28305	COG0523	cobalamin synthesis protein
DJ564_RS28310	COG2879	small protein
DJ564_RS28315	COG1966	Carbon starvation protein
DJ564_RS28340	COG1970	mechanosensitive ion channel activity
DJ564_RS28350	COG2197	response regulator
DJ564_RS28355	COG2813	Specifically methylates the guanine in position
DJ564_RS28365	COG1294	oxidase, subunit
DJ564_RS28370	COG1271	oxidase subunit
DJ564_RS28380	COG1529	Aldehyde oxidase and xanthine dehydrogenase
DJ564_RS28385	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
DJ564_RS28390	COG2080	2 iron, 2 sulfur cluster binding
DJ564_RS28410	COG2252	PERMEase
DJ564_RS28415	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
DJ564_RS28430	COG1942	4-Oxalocrotonate Tautomerase
DJ564_RS28440	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
DJ564_RS28445	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
DJ564_RS28450	COG1309	transcriptional regulator
DJ564_RS28455	COG1082	Xylose isomerase domain protein TIM barrel
DJ564_RS28455	COG3185	4-Hydroxyphenylpyruvate dioxygenase
DJ564_RS28460	COG0477	Major facilitator Superfamily
DJ564_RS28465	COG0697	spore germination
DJ564_RS28475	COG2321	neutral zinc metallopeptidase
DJ564_RS28490	COG1946	Acyl-CoA thioesterase
DJ564_RS28500	COG0123	including yeast histone deacetylase and acetoin utilization protein
DJ564_RS28515	COG0513	Belongs to the DEAD box helicase family
DJ564_RS28520	COG0697	spore germination
DJ564_RS28525	COG1522	sequence-specific DNA binding
DJ564_RS28540	COG1199	ATP-dependent helicase activity
DJ564_RS28540	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
DJ564_RS28555	COG3416	Protein conserved in bacteria
DJ564_RS28600	COG1012	belongs to the aldehyde dehydrogenase family
DJ564_RS28605	COG0583	DNA-binding transcription factor activity
DJ564_RS28610	COG1643	Atp-dependent helicase
DJ564_RS28645	COG1522	sequence-specific DNA binding
DJ564_RS28660	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
DJ564_RS28665	COG1960	acyl-CoA dehydrogenase activity
DJ564_RS28670	COG0784	Response regulator, receiver
DJ564_RS28670	COG2198	Histidine kinase
DJ564_RS28670	COG2205	protein histidine kinase activity
DJ564_RS28680	COG0352	thiamine-phosphate diphosphorylase activity
DJ564_RS28685	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
DJ564_RS28700	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
DJ564_RS28705	COG1702	phosphate starvation-inducible protein PhoH
DJ564_RS28710	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
DJ564_RS28715	COG4535	Mg2 and Co2 transporter CorC
DJ564_RS28720	COG0815	Transfers the fatty acyl group on membrane lipoproteins
DJ564_RS28735	COG0495	leucyl-tRNA aminoacylation
DJ564_RS28755	COG2951	lytic endotransglycosylase activity
DJ564_RS28760	COG1619	proteins homologs of microcin C7 resistance protein MccF
DJ564_RS28765	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
DJ564_RS28770	COG0321	lipoyl(octanoyl) transferase activity
DJ564_RS28775	COG2921	Belongs to the UPF0250 family
DJ564_RS28780	COG1686	Belongs to the peptidase S11 family
DJ564_RS28790	COG2951	lytic endotransglycosylase activity
DJ564_RS28795	COG0772	Belongs to the SEDS family
DJ564_RS28800	COG0768	penicillin binding
DJ564_RS28805	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
DJ564_RS28815	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
DJ564_RS28820	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
DJ564_RS28825	COG2094	Belongs to the DNA glycosylase MPG family
DJ564_RS28830	COG0586	Pfam SNARE associated Golgi protein
DJ564_RS28840	COG1346	cytolysis
DJ564_RS28860	COG0702	epimerase
DJ564_RS28880	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
DJ564_RS28885	COG3284	Transcriptional regulator
DJ564_RS28895	COG0531	amino acid
DJ564_RS28900	COG4303	Ethanolamine ammonia lyase large subunit
DJ564_RS28905	COG4302	ethanolamine ammonia-lyase activity
DJ564_RS28910	COG0456	acetyltransferase
DJ564_RS28915	COG0586	Pfam SNARE associated Golgi protein
DJ564_RS28920	COG3228	Belongs to the MtfA family
DJ564_RS28925	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
DJ564_RS28940	COG4676	Protein conserved in bacteria
DJ564_RS28945	COG5445	Predicted secreted protein (DUF2300)
DJ564_RS28960	COG4685	Uncharacterized protein conserved in bacteria (DUF2138)
DJ564_RS28965	COG4676	Protein conserved in bacteria
DJ564_RS28975	COG1722	exodeoxyribonuclease VII activity
DJ564_RS28980	COG0142	geranyltranstransferase activity
DJ564_RS28985	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
DJ564_RS28990	COG4206	TonB-dependent receptor
DJ564_RS28995	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
DJ564_RS29005	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
DJ564_RS29015	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
DJ564_RS29020	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
DJ564_RS29025	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
DJ564_RS29030	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
DJ564_RS29045	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
DJ564_RS29045	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
DJ564_RS29050	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
DJ564_RS29060	COG2264	protein methyltransferase activity
DJ564_RS29065	COG3118	belongs to the thioredoxin family
DJ564_RS29080	COG1136	(ABC) transporter
DJ564_RS29080	COG0577	efflux transmembrane transporter activity
DJ564_RS29095	COG3047	cAMP biosynthetic process
DJ564_RS29100	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
DJ564_RS29110	COG1201	RNA secondary structure unwinding
DJ564_RS29115	COG0668	transmembrane transport
DJ564_RS29120	COG2814	Major facilitator Superfamily
DJ564_RS29130	COG3568	Endonuclease Exonuclease Phosphatase
DJ564_RS29135	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
DJ564_RS29140	COG0392	lysyltransferase activity
DJ564_RS29160	COG1335	isochorismatase
DJ564_RS29170	COG1842	Phage shock protein A
DJ564_RS29190	COG3766	membrane
DJ564_RS29200	COG0754	glutathionylspermidine amidase activity
DJ564_RS29205	COG1944	ATP diphosphatase activity
DJ564_RS29210	COG0629	single-stranded DNA binding
DJ564_RS29215	COG2814	Major facilitator Superfamily
DJ564_RS29220	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
DJ564_RS29225	COG2193	ferroxidase activity
DJ564_RS29235	COG0203	ribosomal protein L17
DJ564_RS29240	COG0202	RNA polymerase activity
DJ564_RS29245	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
DJ564_RS29250	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
DJ564_RS29255	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
DJ564_RS29260	COG0257	Belongs to the bacterial ribosomal protein bL36 family
DJ564_RS29270	COG0200	Binds to the 23S rRNA
DJ564_RS29275	COG1841	ribosomal large subunit assembly
DJ564_RS29280	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
DJ564_RS29285	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
DJ564_RS29290	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
DJ564_RS29295	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
DJ564_RS29300	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
DJ564_RS29305	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
DJ564_RS29310	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
DJ564_RS29315	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
DJ564_RS29320	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
DJ564_RS29325	COG0255	Belongs to the universal ribosomal protein uL29 family
DJ564_RS29330	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
DJ564_RS29335	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
DJ564_RS29340	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
DJ564_RS29345	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
DJ564_RS29350	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
DJ564_RS29355	COG0089	rRNA binding
DJ564_RS29360	COG0088	Forms part of the polypeptide exit tunnel
DJ564_RS29365	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
DJ564_RS29370	COG0051	transcription antitermination factor activity, RNA binding
DJ564_RS29375	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
DJ564_RS29380	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
DJ564_RS29385	COG0049	tRNA binding
DJ564_RS29390	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
DJ564_RS29395	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
DJ564_RS29400	COG0085	RNA polymerase activity
DJ564_RS29405	COG0222	ribosome binding
DJ564_RS29410	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
DJ564_RS29415	COG0081	regulation of translation
DJ564_RS29420	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
DJ564_RS29440	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
DJ564_RS29465	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
DJ564_RS29505	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
DJ564_RS29515	COG0739	heme binding
DJ564_RS29520	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
DJ564_RS29525	COG0316	Belongs to the HesB IscA family
DJ564_RS29530	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
DJ564_RS29535	COG1981	membrane
DJ564_RS29550	COG1028	Short-chain dehydrogenase reductase Sdr
DJ564_RS29555	COG0537	adenosine 5'-monophosphoramidase activity
DJ564_RS29560	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
DJ564_RS29565	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
DJ564_RS29570	COG1765	OsmC-like protein
DJ564_RS29585	COG0134	indole-3-glycerol-phosphate synthase activity
DJ564_RS29590	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
DJ564_RS29595	COG0512	Glutamine amidotransferase of anthranilate synthase
DJ564_RS29605	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
DJ564_RS29610	COG0546	phosphoglycolate phosphatase activity
DJ564_RS29615	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
DJ564_RS29620	COG1454	alcohol dehydrogenase
DJ564_RS29630	COG1176	ABC-type spermidine putrescine transport system, permease component I
DJ564_RS29640	COG3842	ATPase activity
DJ564_RS29650	COG2197	response regulator
DJ564_RS29655	COG4585	Histidine kinase
DJ564_RS29665	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
DJ564_RS29670	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
DJ564_RS29675	COG3178	'Phosphotransferase
DJ564_RS29680	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
DJ564_RS29685	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
DJ564_RS29690	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
DJ564_RS29695	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
DJ564_RS29700	COG2967	ApaG domain
DJ564_RS29705	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
DJ564_RS29710	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
DJ564_RS29715	COG2766	serine protein kinase
DJ564_RS29720	COG2718	Belongs to the UPF0229 family
DJ564_RS29725	COG2719	SpoVR family
DJ564_RS29730	COG0617	tRNA 3'-terminal CCA addition
DJ564_RS29740	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
DJ564_RS29745	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
DJ564_RS29750	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
DJ564_RS29755	COG0828	Belongs to the bacterial ribosomal protein bS21 family
DJ564_RS29760	COG0358	DNA primase activity
DJ564_RS29765	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
DJ564_RS29815	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
DJ564_RS29820	COG1025	Belongs to the peptidase M16 family
DJ564_RS29830	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
DJ564_RS29835	COG5424	Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ
DJ564_RS29845	COG0535	radical SAM domain protein
DJ564_RS29860	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
DJ564_RS29865	COG0583	DNA-binding transcription factor activity
DJ564_RS29870	COG1960	acyl-CoA dehydrogenase activity
DJ564_RS29875	COG1960	acyl-CoA dehydrogenase activity
DJ564_RS29880	COG3706	GGDEF domain
DJ564_RS29885	COG1960	acyl-CoA dehydrogenase activity
DJ564_RS29905	COG2226	methyltransferase
DJ564_RS29905	COG1073	alpha beta
DJ564_RS29910	COG0156	8-amino-7-oxononanoate synthase activity
DJ564_RS29920	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
DJ564_RS29925	COG1040	competence protein
DJ564_RS29935	COG3585	molybdate ion transport
DJ564_RS29935	COG2005	Transcriptional regulator
DJ564_RS29945	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
DJ564_RS29965	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
DJ564_RS29985	COG1595	DNA-templated transcription, initiation
DJ564_RS29990	COG3712	iron ion homeostasis
DJ564_RS29995	COG4774	siderophore transport
DJ564_RS30020	COG4452	Inner membrane protein CreD
DJ564_RS30025	COG2205	protein histidine kinase activity
DJ564_RS30030	COG0745	RESPONSE REGULATOR receiver
DJ564_RS30035	COG4067	protein conserved in archaea
DJ564_RS30035	COG0189	ligase activity
DJ564_RS30040	COG0204	Acyl-transferase
DJ564_RS30050	COG1063	alcohol dehydrogenase
DJ564_RS30080	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
DJ564_RS30095	COG1028	Short-chain dehydrogenase reductase Sdr
DJ564_RS30100	COG1017	nitric oxide dioxygenase activity
DJ564_RS30100	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
DJ564_RS30110	COG4638	Rieske (2fe-2S)
DJ564_RS30130	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
DJ564_RS30135	COG2181	nitrate reductase activity
DJ564_RS30135	COG0247	lactate metabolic process
DJ564_RS30145	COG0446	pyridine nucleotide-disulphide oxidoreductase
DJ564_RS30145	COG1902	pentaerythritol trinitrate reductase activity
DJ564_RS30205	COG3246	L-lysine catabolic process to acetate
DJ564_RS30210	COG1250	3-hydroxyacyl-CoA dehydrogenase
DJ564_RS30240	COG1760	l-serine dehydratase
DJ564_RS30250	COG4176	ABC-type proline glycine betaine transport system permease component
DJ564_RS30255	COG4175	Glycine betaine
DJ564_RS30260	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
DJ564_RS30265	COG1309	transcriptional regulator
DJ564_RS30270	COG1012	belongs to the aldehyde dehydrogenase family
DJ564_RS30275	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
DJ564_RS30285	COG0312	modulator of DNA gyrase
DJ564_RS30290	COG0477	Major facilitator Superfamily
DJ564_RS30295	COG0513	Belongs to the DEAD box helicase family
DJ564_RS30300	COG2081	HI0933 family
DJ564_RS30305	COG1289	transmembrane transporter activity
DJ564_RS30315	COG2153	protein acetylation
DJ564_RS30325	COG1451	nucleotide metabolic process
DJ564_RS30380	COG0126	phosphoglycerate kinase activity
DJ564_RS30385	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
DJ564_RS30395	COG0640	Transcriptional regulator
DJ564_RS30400	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
DJ564_RS30405	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
DJ564_RS30410	COG1422	Protein of unknown function (DUF1090)
DJ564_RS30435	COG2814	Major facilitator Superfamily
DJ564_RS30445	COG2116	formate transmembrane transporter activity
DJ564_RS30455	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
DJ564_RS30465	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
DJ564_RS30475	COG0513	Belongs to the DEAD box helicase family
DJ564_RS30480	COG2353	YceI-like domain
DJ564_RS30485	COG3038	cytochrome b561
DJ564_RS30500	COG1385	rRNA (uridine-N3-)-methyltransferase activity
DJ564_RS30505	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DJ564_RS30525	COG1272	protein, Hemolysin III
DJ564_RS30565	COG3052	prosthetic group binding
DJ564_RS30570	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
DJ564_RS30605	COG2198	Histidine kinase
DJ564_RS30605	COG0784	Response regulator, receiver
DJ564_RS30605	COG0643	Histidine kinase
DJ564_RS30630	COG0189	ligase activity
DJ564_RS30640	COG1678	Uncharacterized ACR, COG1678
DJ564_RS30645	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
DJ564_RS30650	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
DJ564_RS30655	COG0540	Belongs to the ATCase OTCase family
DJ564_RS30660	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
DJ564_RS30670	COG0791	NLP P60 protein
DJ564_RS30695	COG1872	DUF167
DJ564_RS30700	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
DJ564_RS30705	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
DJ564_RS30705	COG2813	Specifically methylates the guanine in position
DJ564_RS30715	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
DJ564_RS30720	COG0635	Involved in the biosynthesis of porphyrin-containing compound
DJ564_RS30730	COG0220	tRNA (guanine-N7-)-methyltransferase activity
DJ564_RS30735	COG2022	thiamine diphosphate biosynthetic process
DJ564_RS30745	COG2363	Small membrane protein
DJ564_RS30750	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
DJ564_RS30760	COG2177	Part of the ABC transporter FtsEX involved in
DJ564_RS30765	COG2884	Cell division ATP-binding protein ftsE
DJ564_RS30770	COG0552	protein localization to endoplasmic reticulum
DJ564_RS30780	COG0612	Peptidase, M16
DJ564_RS30785	COG0612	Peptidase, M16
DJ564_RS30790	COG0742	ribosomal rna small subunit methyltransferase
DJ564_RS30825	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
DJ564_RS30830	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
DJ564_RS30835	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
DJ564_RS30845	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
DJ564_RS30855	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
DJ564_RS30870	COG2814	Major facilitator Superfamily
DJ564_RS30875	COG0129	dihydroxy-acid dehydratase activity
DJ564_RS30885	COG1823	symporter activity
DJ564_RS30900	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
DJ564_RS30925	COG1840	ABC-type Fe3 transport system, periplasmic component
DJ564_RS30930	COG1178	ABC-type Fe3 transport system permease component
DJ564_RS30935	COG3842	ATPase activity
DJ564_RS30940	COG0583	DNA-binding transcription factor activity
DJ564_RS30950	COG0789	Transcriptional regulator
DJ564_RS30955	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
DJ564_RS30960	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
DJ564_RS30965	COG0730	response to heat
DJ564_RS30975	COG3605	phosphoenolpyruvate-protein phosphotransferase activity
DJ564_RS30980	COG0494	nUDIX hydrolase
DJ564_RS30995	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
DJ564_RS31000	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
DJ564_RS31010	COG3204	pilus organization
DJ564_RS31015	COG3204	pilus organization
DJ564_RS31025	COG0179	Fumarylacetoacetate (FAA) hydrolase
DJ564_RS31030	COG0277	FAD linked oxidase domain protein
DJ564_RS31040	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
DJ564_RS31050	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DJ564_RS31055	COG1683	Conserved Protein
DJ564_RS31095	COG1177	transmembrane transport
DJ564_RS31100	COG1176	ABC-type spermidine putrescine transport system, permease component I
DJ564_RS31105	COG3842	ATPase activity
DJ564_RS31125	COG0174	glutamine synthetase
DJ564_RS31135	COG0174	glutamine synthetase
DJ564_RS31150	COG1116	anion transmembrane transporter activity
DJ564_RS31155	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
DJ564_RS31160	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
DJ564_RS31165	COG0431	NADPH-dependent FMN reductase
DJ564_RS31170	COG0450	alkyl hydroperoxide reductase
DJ564_RS31190	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
DJ564_RS31190	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
DJ564_RS31205	COG1522	sequence-specific DNA binding
DJ564_RS31215	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
DJ564_RS31225	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
DJ564_RS31225	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
DJ564_RS31230	COG0509	glycine decarboxylation via glycine cleavage system
DJ564_RS31235	COG0404	The glycine cleavage system catalyzes the degradation of glycine
DJ564_RS31240	COG1178	ABC-type Fe3 transport system permease component
DJ564_RS31250	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DJ564_RS31260	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
DJ564_RS31265	COG0006	proline dipeptidase activity
DJ564_RS31270	COG3079	Belongs to the UPF0149 family
DJ564_RS31290	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
DJ564_RS31300	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
DJ564_RS31305	COG0842	Transport permease protein
DJ564_RS31305	COG1129	ABC transporter
DJ564_RS31310	COG0842	Transport permease protein
DJ564_RS31330	COG2271	Major facilitator Superfamily
DJ564_RS31345	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
DJ564_RS31350	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
DJ564_RS31350	COG2755	lipolytic protein G-D-S-L family
DJ564_RS31365	COG2186	Transcriptional regulator
DJ564_RS31370	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
DJ564_RS31375	COG0765	amino acid transport
DJ564_RS31380	COG0765	amino acid transport
DJ564_RS31385	COG1126	abc transporter atp-binding protein
DJ564_RS31390	COG0248	Ppx GppA phosphatase
DJ564_RS31395	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
DJ564_RS31405	COG0586	Pfam SNARE associated Golgi protein
DJ564_RS31415	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
DJ564_RS31420	COG1671	Belongs to the UPF0178 family
DJ564_RS31425	COG0672	)-iron permease
DJ564_RS31450	COG1280	lysine exporter protein (LysE YggA)
DJ564_RS31460	COG0488	(ABC) transporter
DJ564_RS31485	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
DJ564_RS31505	COG0181	hydroxymethylbilane synthase activity
DJ564_RS31515	COG0165	Argininosuccinate lyase
DJ564_RS31520	COG0625	glutathione transferase activity
DJ564_RS31540	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
DJ564_RS31555	COG1965	Belongs to the frataxin family
DJ564_RS31570	COG0019	diaminopimelate decarboxylase activity
DJ564_RS31575	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
DJ564_RS31585	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
DJ564_RS31590	COG1011	Hydrolase
DJ564_RS31600	COG0432	Pfam Uncharacterised protein family UPF0047
DJ564_RS31605	COG0004	ammonium transporteR
DJ564_RS31610	COG0347	Belongs to the P(II) protein family
DJ564_RS31660	COG4974	Belongs to the 'phage' integrase family
DJ564_RS31760	COG2433	Pfam Transposase IS66
DJ564_RS31775	COG3593	DNA synthesis involved in DNA repair
DJ564_RS31865	COG1262	PFAM Formylglycine-generating sulfatase enzyme
DJ564_RS31895	COG0583	DNA-binding transcription factor activity
DJ564_RS31900	COG0534	Mate efflux family protein