locus-tag class description IH404_RS00005 PF13361 UvrD-like helicase C-terminal domain IH404_RS00005 PF00580 UvrD/REP helicase N-terminal domain IH404_RS00015 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain IH404_RS00015 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain IH404_RS00020 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IH404_RS00030 PF00842 Alanine racemase, C-terminal domain IH404_RS00030 PF01168 Alanine racemase, N-terminal domain IH404_RS00040 PF01266 FAD dependent oxidoreductase IH404_RS00045 PF01037 Lrp/AsnC ligand binding domain IH404_RS00055 PF01266 FAD dependent oxidoreductase IH404_RS00065 PF00155 Aminotransferase class I and II IH404_RS00065 PF00392 Bacterial regulatory proteins, gntR family IH404_RS00070 PF13091 PLD-like domain IH404_RS00080 PF00171 Aldehyde dehydrogenase family IH404_RS00090 PF00471 Ribosomal protein L33 IH404_RS00095 PF00830 Ribosomal L28 family IH404_RS00100 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IH404_RS00105 PF04002 RadC-like JAB domain IH404_RS00110 PF04127 DNA / pantothenate metabolism flavoprotein IH404_RS00110 PF02441 Flavoprotein IH404_RS00115 PF00692 dUTPase IH404_RS00120 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IH404_RS00120 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IH404_RS00120 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IH404_RS00120 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IH404_RS00125 PF00696 Amino acid kinase family IH404_RS00130 PF00156 Phosphoribosyl transferase domain IH404_RS00135 PF03372 Endonuclease/Exonuclease/phosphatase family IH404_RS00145 PF03725 3' exoribonuclease family, domain 2 IH404_RS00145 PF01138 3' exoribonuclease family, domain 1 IH404_RS00150 PF08340 Domain of unknown function (DUF1732) IH404_RS00150 PF03755 YicC-like family, N-terminal region IH404_RS00155 PF00625 Guanylate kinase IH404_RS00160 PF01192 RNA polymerase Rpb6 IH404_RS00165 PF02824 TGS domain IH404_RS00165 PF13291 ACT domain IH404_RS00165 PF04607 Region found in RelA / SpoT proteins IH404_RS00170 PF01042 Endoribonuclease L-PSP IH404_RS00185 PF01618 MotA/TolQ/ExbB proton channel family IH404_RS00190 PF02472 Biopolymer transport protein ExbD/TolR IH404_RS00195 PF03544 Gram-negative bacterial TonB protein C-terminal IH404_RS00200 PF03466 LysR substrate binding domain IH404_RS00200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS00205 PF00271 Helicase conserved C-terminal domain IH404_RS00205 PF17191 RecG wedge domain IH404_RS00205 PF00270 DEAD/DEAH box helicase IH404_RS00225 PF03781 Sulfatase-modifying factor enzyme 1 IH404_RS00235 PF00005 ABC transporter IH404_RS00240 PF03793 PASTA domain IH404_RS00240 PF00069 Protein kinase domain IH404_RS00255 PF06744 Type VI secretion protein IcmF C-terminal IH404_RS00255 PF06761 Intracellular multiplication and human macrophage-killing IH404_RS00255 PF14331 ImcF-related N-terminal domain IH404_RS00260 PF13677 Membrane MotB of proton-channel complex MotA/MotB IH404_RS00260 PF00691 OmpA family IH404_RS00265 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE IH404_RS00280 PF06812 ImpA, N-terminal, type VI secretion system IH404_RS00285 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 IH404_RS00290 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath IH404_RS00295 PF05638 Type VI secretion system effector, Hcp IH404_RS00300 PF04965 Gene 25-like lysozyme IH404_RS00305 PF05947 Type VI secretion system, TssF IH404_RS00315 PF10431 C-terminal, D2-small domain, of ClpB protein IH404_RS00315 PF17871 AAA lid domain IH404_RS00315 PF07724 AAA domain (Cdc48 subfamily) IH404_RS00315 PF00004 ATPase family associated with various cellular activities (AAA) IH404_RS00320 PF04717 Type VI secretion system, phage-baseplate injector IH404_RS00330 PF03527 RHS protein IH404_RS00345 PF00216 Bacterial DNA-binding protein IH404_RS00350 PF18113 Rubredoxin binding C-terminal domain IH404_RS00350 PF07992 Pyridine nucleotide-disulphide oxidoreductase IH404_RS00355 PF00301 Rubredoxin IH404_RS00360 PF04345 Chorismate lyase IH404_RS00365 PF01040 UbiA prenyltransferase family IH404_RS00375 PF00486 Transcriptional regulatory protein, C terminal IH404_RS00375 PF00072 Response regulator receiver domain IH404_RS00380 PF11808 Phosphate regulon sensor protein PhoR IH404_RS00380 PF00989 PAS fold IH404_RS00380 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS00380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS00385 PF01595 Cyclin M transmembrane N-terminal domain IH404_RS00385 PF03471 Transporter associated domain IH404_RS00385 PF00571 CBS domain IH404_RS00400 PF00072 Response regulator receiver domain IH404_RS00405 PF01895 PhoU domain IH404_RS00410 PF00005 ABC transporter IH404_RS00415 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS00420 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS00425 PF12849 PBP superfamily domain IH404_RS00430 PF07690 Major Facilitator Superfamily IH404_RS00435 PF03061 Thioesterase superfamily IH404_RS00455 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain IH404_RS00455 PF02222 ATP-grasp domain IH404_RS00460 PF00731 AIR carboxylase IH404_RS00470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS00470 PF03466 LysR substrate binding domain IH404_RS00475 PF00206 Lyase IH404_RS00475 PF10415 Fumarase C C-terminus IH404_RS00480 PF01235 Sodium:alanine symporter family IH404_RS00485 PF17763 Glutaminase/Asparaginase C-terminal domain IH404_RS00485 PF00710 Asparaginase, N-terminal IH404_RS00490 PF12833 Helix-turn-helix domain IH404_RS00490 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term IH404_RS00495 PF00850 Histone deacetylase domain IH404_RS00500 PF13416 Bacterial extracellular solute-binding protein IH404_RS00510 PF00155 Aminotransferase class I and II IH404_RS00510 PF00392 Bacterial regulatory proteins, gntR family IH404_RS00515 PF04299 Putative FMN-binding domain IH404_RS00535 PF00497 Bacterial extracellular solute-binding proteins, family 3 IH404_RS00540 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS00565 PF00682 HMGL-like IH404_RS00565 PF02436 Conserved carboxylase domain IH404_RS00565 PF00364 Biotin-requiring enzyme IH404_RS00570 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IH404_RS00570 PF00289 Biotin carboxylase, N-terminal domain IH404_RS00570 PF02785 Biotin carboxylase C-terminal domain IH404_RS00575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS00575 PF03466 LysR substrate binding domain IH404_RS00585 PF01380 SIS domain IH404_RS00585 PF01418 Helix-turn-helix domain, rpiR family IH404_RS00590 PF00990 Diguanylate cyclase, GGDEF domain IH404_RS00590 PF03707 Bacterial signalling protein N terminal repeat IH404_RS00590 PF00563 EAL domain IH404_RS00590 PF13188 PAS domain IH404_RS00595 PF00580 UvrD/REP helicase N-terminal domain IH404_RS00595 PF13361 UvrD-like helicase C-terminal domain IH404_RS00610 PF00999 Sodium/hydrogen exchanger family IH404_RS00610 PF02254 TrkA-N domain IH404_RS00615 PF03061 Thioesterase superfamily IH404_RS00620 PF08543 Phosphomethylpyrimidine kinase IH404_RS00630 PF07683 Cobalamin synthesis protein cobW C-terminal domain IH404_RS00630 PF02492 CobW/HypB/UreG, nucleotide-binding domain IH404_RS00640 PF07683 Cobalamin synthesis protein cobW C-terminal domain IH404_RS00640 PF02492 CobW/HypB/UreG, nucleotide-binding domain IH404_RS00645 PF01258 Prokaryotic dksA/traR C4-type zinc finger IH404_RS00655 PF01520 N-acetylmuramoyl-L-alanine amidase IH404_RS00655 PF11741 AMIN domain IH404_RS00660 PF02649 Type I GTP cyclohydrolase folE2 IH404_RS00665 PF00005 ABC transporter IH404_RS00670 PF00950 ABC 3 transport family IH404_RS00675 PF01297 Zinc-uptake complex component A periplasmic IH404_RS00685 PF01979 Amidohydrolase family IH404_RS00690 PF12276 Protein of unknown function (DUF3617) IH404_RS00695 PF13091 PLD-like domain IH404_RS00695 PF13396 Phospholipase_D-nuclease N-terminal IH404_RS00710 PF05114 Protein of unknown function (DUF692) IH404_RS00720 PF00403 Heavy-metal-associated domain IH404_RS00740 PF01066 CDP-alcohol phosphatidyltransferase IH404_RS00745 PF12147 Putative methyltransferase IH404_RS00745 PF12146 Serine aminopeptidase, S33 IH404_RS00750 PF00782 Dual specificity phosphatase, catalytic domain IH404_RS00775 PF01380 SIS domain IH404_RS00780 PF00455 DeoR C terminal sensor domain IH404_RS00780 PF08220 DeoR-like helix-turn-helix domain IH404_RS00785 PF12804 MobA-like NTP transferase domain IH404_RS00785 PF00132 Bacterial transferase hexapeptide (six repeats) IH404_RS00790 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain IH404_RS00790 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain IH404_RS00795 PF02874 ATP synthase alpha/beta family, beta-barrel domain IH404_RS00795 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IH404_RS00800 PF00231 ATP synthase IH404_RS00805 PF00306 ATP synthase alpha/beta chain, C terminal domain IH404_RS00805 PF02874 ATP synthase alpha/beta family, beta-barrel domain IH404_RS00805 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IH404_RS00810 PF00213 ATP synthase delta (OSCP) subunit IH404_RS00815 PF00430 ATP synthase B/B' CF(0) IH404_RS00820 PF00137 ATP synthase subunit C IH404_RS00825 PF00119 ATP synthase A chain IH404_RS00830 PF03899 ATP synthase I chain IH404_RS00835 PF02195 ParB-like nuclease domain IH404_RS00835 PF17762 HTH domain found in ParB protein IH404_RS00840 PF13614 AAA domain IH404_RS00845 PF02527 rRNA small subunit methyltransferase G IH404_RS00850 PF13932 GidA associated domain IH404_RS00850 PF01134 Glucose inhibited division protein A IH404_RS00855 PF01926 50S ribosome-binding GTPase IH404_RS00855 PF12631 MnmE helical domain IH404_RS00855 PF10396 GTP-binding protein TrmE N-terminus IH404_RS00860 PF02096 60Kd inner membrane protein IH404_RS00860 PF14849 YidC periplasmic domain IH404_RS00865 PF01809 Putative membrane protein insertion efficiency factor IH404_RS00870 PF00825 Ribonuclease P IH404_RS00875 PF00468 Ribosomal protein L34 IH404_RS00880 PF11638 DnaA N-terminal domain IH404_RS00880 PF08299 Bacterial dnaA protein helix-turn-helix IH404_RS00880 PF00308 Bacterial dnaA protein IH404_RS00885 PF02768 DNA polymerase III beta subunit, C-terminal domain IH404_RS00885 PF02767 DNA polymerase III beta subunit, central domain IH404_RS00885 PF00712 DNA polymerase III beta subunit, N-terminal domain IH404_RS00890 PF02463 RecF/RecN/SMC N terminal domain IH404_RS00895 PF00204 DNA gyrase B IH404_RS00895 PF00986 DNA gyrase B subunit, carboxyl terminus IH404_RS00895 PF18053 DNA gyrase B subunit insert domain IH404_RS00895 PF01751 Toprim domain IH404_RS00895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS00900 PF00486 Transcriptional regulatory protein, C terminal IH404_RS00900 PF00072 Response regulator receiver domain IH404_RS00905 PF07689 KaiB domain IH404_RS00905 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS00905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS00920 PF05746 DALR anticodon binding domain IH404_RS00920 PF02092 Glycyl-tRNA synthetase beta subunit IH404_RS00925 PF02091 Glycyl-tRNA synthetase alpha subunit IH404_RS00930 PF03352 Methyladenine glycosylase IH404_RS00945 PF02254 TrkA-N domain IH404_RS00945 PF02080 TrkA-C domain IH404_RS00950 PF01189 16S rRNA methyltransferase RsmB/F IH404_RS00950 PF01029 NusB family IH404_RS00955 PF00551 Formyl transferase IH404_RS00955 PF02911 Formyl transferase, C-terminal domain IH404_RS00960 PF01327 Polypeptide deformylase IH404_RS00970 PF02481 DNA recombination-mediator protein A IH404_RS00970 PF17782 DprA winged helix domain IH404_RS00975 PF01300 Telomere recombination IH404_RS00980 PF08240 Alcohol dehydrogenase GroES-like domain IH404_RS00980 PF00107 Zinc-binding dehydrogenase IH404_RS00985 PF01218 Coproporphyrinogen III oxidase IH404_RS00990 PF08501 Shikimate dehydrogenase substrate binding domain IH404_RS00990 PF01488 Shikimate / quinate 5-dehydrogenase IH404_RS00990 PF18317 Shikimate 5'-dehydrogenase C-terminal domain IH404_RS00995 PF01740 STAS domain IH404_RS00995 PF00916 Sulfate permease family IH404_RS01000 PF04069 Substrate binding domain of ABC-type glycine betaine transport system IH404_RS01005 PF12411 Choline sulfatase enzyme C terminal IH404_RS01005 PF00884 Sulfatase IH404_RS01010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS01010 PF03466 LysR substrate binding domain IH404_RS01020 PF05035 2-keto-3-deoxy-galactonokinase IH404_RS01025 PF01081 KDPG and KHG aldolase IH404_RS01030 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain IH404_RS01030 PF13378 Enolase C-terminal domain-like IH404_RS01035 PF07690 Major Facilitator Superfamily IH404_RS01040 PF01565 FAD binding domain IH404_RS01040 PF08031 Berberine and berberine like IH404_RS01045 PF00290 Tryptophan synthase alpha chain IH404_RS01050 PF00291 Pyridoxal-phosphate dependent enzyme IH404_RS01055 PF03466 LysR substrate binding domain IH404_RS01055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS01065 PF07311 Dodecin IH404_RS01075 PF00296 Luciferase-like monooxygenase IH404_RS01080 PF02566 OsmC-like protein IH404_RS01100 PF13419 Haloacid dehalogenase-like hydrolase IH404_RS01105 PF00132 Bacterial transferase hexapeptide (six repeats) IH404_RS01110 PF01432 Peptidase family M3 IH404_RS01125 PF13618 Gluconate 2-dehydrogenase subunit 3 IH404_RS01130 PF05199 GMC oxidoreductase IH404_RS01130 PF00732 GMC oxidoreductase IH404_RS01135 PF00034 Cytochrome c IH404_RS01135 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IH404_RS01140 PF04055 Radical SAM superfamily IH404_RS01145 PF00484 Carbonic anhydrase IH404_RS01150 PF01740 STAS domain IH404_RS01150 PF00916 Sulfate permease family IH404_RS01160 PF02790 Cytochrome C oxidase subunit II, transmembrane domain IH404_RS01160 PF00116 Cytochrome C oxidase subunit II, periplasmic domain IH404_RS01165 PF00115 Cytochrome C and Quinol oxidase polypeptide I IH404_RS01170 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 IH404_RS01175 PF00510 Cytochrome c oxidase subunit III IH404_RS01185 PF02104 SURF1 family IH404_RS01195 PF02628 Cytochrome oxidase assembly protein IH404_RS01200 PF01040 UbiA prenyltransferase family IH404_RS01205 PF02630 SCO1/SenC IH404_RS01210 PF03180 NLPA lipoprotein IH404_RS01215 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS01220 PF09383 NIL domain IH404_RS01220 PF00005 ABC transporter IH404_RS01225 PF00199 Catalase IH404_RS01225 PF06628 Catalase-related immune-responsive IH404_RS01225 PF18011 C-terminal domain found in long catalases IH404_RS01235 PF00950 ABC 3 transport family IH404_RS01240 PF00005 ABC transporter IH404_RS01245 PF01475 Ferric uptake regulator family IH404_RS01250 PF01297 Zinc-uptake complex component A periplasmic IH404_RS01255 PF01636 Phosphotransferase enzyme family IH404_RS01265 PF00476 DNA polymerase family A IH404_RS01265 PF01367 5'-3' exonuclease, C-terminal SAM fold IH404_RS01265 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain IH404_RS01265 PF01612 3'-5' exonuclease IH404_RS01270 PF01926 50S ribosome-binding GTPase IH404_RS01280 PF00034 Cytochrome c IH404_RS01285 PF01323 DSBA-like thioredoxin domain IH404_RS01295 PF00990 Diguanylate cyclase, GGDEF domain IH404_RS01300 PF01510 N-acetylmuramoyl-L-alanine amidase IH404_RS01305 PF16767 Sensor domain of alginate biosynthesis sensor protein KinB IH404_RS01305 PF00672 HAMP domain IH404_RS01305 PF08448 PAS fold IH404_RS01305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS01305 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS01310 PF02954 Bacterial regulatory protein, Fis family IH404_RS01310 PF00072 Response regulator receiver domain IH404_RS01310 PF00158 Sigma-54 interaction domain IH404_RS01320 PF07043 Protein of unknown function (DUF1328) IH404_RS01330 PF00375 Sodium:dicarboxylate symporter family IH404_RS01335 PF07670 Nucleoside recognition IH404_RS01350 PF00005 ABC transporter IH404_RS01355 PF02405 Permease MlaE IH404_RS01365 PF00675 Insulinase (Peptidase family M16) IH404_RS01365 PF05193 Peptidase M16 inactive domain IH404_RS01370 PF02690 Na+/Pi-cotransporter IH404_RS01375 PF03741 Integral membrane protein TerC family IH404_RS01380 PF03600 Citrate transporter IH404_RS01410 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain IH404_RS01410 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain IH404_RS01415 PF02233 NAD(P) transhydrogenase beta subunit IH404_RS01420 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch IH404_RS01425 PF05222 Alanine dehydrogenase/PNT, N-terminal domain IH404_RS01425 PF01262 Alanine dehydrogenase/PNT, C-terminal domain IH404_RS01430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS01430 PF03466 LysR substrate binding domain IH404_RS01435 PF02770 Acyl-CoA dehydrogenase, middle domain IH404_RS01435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IH404_RS01435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IH404_RS01440 PF02515 CoA-transferase family III IH404_RS01475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IH404_RS01475 PF02743 Cache domain IH404_RS01475 PF00672 HAMP domain IH404_RS01480 PF13193 AMP-binding enzyme C-terminal domain IH404_RS01480 PF00501 AMP-binding enzyme IH404_RS01480 PF00550 Phosphopantetheine attachment site IH404_RS01480 PF07993 Male sterility protein IH404_RS01480 PF00668 Condensation domain IH404_RS01505 PF13188 PAS domain IH404_RS01505 PF00990 Diguanylate cyclase, GGDEF domain IH404_RS01505 PF00563 EAL domain IH404_RS01505 PF03707 Bacterial signalling protein N terminal repeat IH404_RS01520 PF02321 Outer membrane efflux protein IH404_RS01525 PF00005 ABC transporter IH404_RS01525 PF00664 ABC transporter transmembrane region IH404_RS01525 PF03412 Peptidase C39 family IH404_RS01530 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IH404_RS01530 PF00529 HlyD membrane-fusion protein of T1SS IH404_RS01535 PF02668 Taurine catabolism dioxygenase TauD, TfdA family IH404_RS01545 PF00005 ABC transporter IH404_RS01550 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS01555 PF03466 LysR substrate binding domain IH404_RS01555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS01560 PF07690 Major Facilitator Superfamily IH404_RS01565 PF13533 Biotin-lipoyl like IH404_RS01570 PF02321 Outer membrane efflux protein IH404_RS01575 PF08281 Sigma-70, region 4 IH404_RS01575 PF04542 Sigma-70 region 2 IH404_RS01585 PF00593 TonB dependent receptor IH404_RS01585 PF07715 TonB-dependent Receptor Plug Domain IH404_RS01625 PF04632 Fusaric acid resistance protein family IH404_RS01635 PF13533 Biotin-lipoyl like IH404_RS01640 PF02321 Outer membrane efflux protein IH404_RS01650 PF06097 Bacterial protein of unknown function (DUF945) IH404_RS01660 PF14883 Hypothetical glycosyl hydrolase family 13 IH404_RS01660 PF01522 Polysaccharide deacetylase IH404_RS01665 PF00535 Glycosyl transferase family 2 IH404_RS01675 PF08479 POTRA domain, ShlB-type IH404_RS01675 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB IH404_RS01675 PF17287 POTRA domain IH404_RS01680 PF04829 Pre-toxin domain with VENN motif IH404_RS01680 PF05594 Haemagluttinin repeat IH404_RS01680 PF14436 Bacterial EndoU nuclease IH404_RS01680 PF05860 haemagglutination activity domain IH404_RS01680 PF13332 Hemagglutinin repeat IH404_RS01725 PF03783 Curli production assembly/transport component CsgG IH404_RS01735 PF05643 Putative bacterial lipoprotein (DUF799) IH404_RS01745 PF12034 Domain of unknown function (DUF3520) IH404_RS01745 PF12450 von Willebrand factor IH404_RS01745 PF00092 von Willebrand factor type A domain IH404_RS01750 PF08281 Sigma-70, region 4 IH404_RS01750 PF04542 Sigma-70 region 2 IH404_RS01775 PF02384 N-6 DNA Methylase IH404_RS01775 PF12161 HsdM N-terminal domain IH404_RS01790 PF18766 SWI2/SNF2 ATPase IH404_RS01790 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) IH404_RS01790 PF12008 Type I restriction and modification enzyme - subunit R C terminal IH404_RS01825 PF04471 Restriction endonuclease IH404_RS01825 PF14338 Mrr N-terminal domain IH404_RS01850 PF00589 Phage integrase family IH404_RS01900 PF00171 Aldehyde dehydrogenase family IH404_RS01905 PF00202 Aminotransferase class-III IH404_RS01910 PF00072 Response regulator receiver domain IH404_RS01910 PF00486 Transcriptional regulatory protein, C terminal IH404_RS01915 PF08448 PAS fold IH404_RS01915 PF00990 Diguanylate cyclase, GGDEF domain IH404_RS01925 PF00563 EAL domain IH404_RS01925 PF00990 Diguanylate cyclase, GGDEF domain IH404_RS01925 PF03707 Bacterial signalling protein N terminal repeat IH404_RS01940 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS01945 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS01950 PF00005 ABC transporter IH404_RS01950 PF12857 TOBE-like domain IH404_RS01960 PF00027 Cyclic nucleotide-binding domain IH404_RS01960 PF13545 Crp-like helix-turn-helix domain IH404_RS01965 PF00576 HIUase/Transthyretin family IH404_RS01975 PF00072 Response regulator receiver domain IH404_RS01975 PF00486 Transcriptional regulatory protein, C terminal IH404_RS01980 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term IH404_RS01980 PF12833 Helix-turn-helix domain IH404_RS01990 PF00005 ABC transporter IH404_RS01995 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS02000 PF09084 NMT1/THI5 like IH404_RS02005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS02005 PF03466 LysR substrate binding domain IH404_RS02010 PF02668 Taurine catabolism dioxygenase TauD, TfdA family IH404_RS02015 PF00884 Sulfatase IH404_RS02015 PF16347 Domain of unknown function (DUF4976) IH404_RS02025 PF03466 LysR substrate binding domain IH404_RS02025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS02030 PF07715 TonB-dependent Receptor Plug Domain IH404_RS02030 PF00593 TonB dependent receptor IH404_RS02035 PF07690 Major Facilitator Superfamily IH404_RS02040 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region IH404_RS02045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS02045 PF03466 LysR substrate binding domain IH404_RS02050 PF03544 Gram-negative bacterial TonB protein C-terminal IH404_RS02055 PF01618 MotA/TolQ/ExbB proton channel family IH404_RS02060 PF02472 Biopolymer transport protein ExbD/TolR IH404_RS02065 PF12918 TcdB toxin N-terminal helical domain IH404_RS02065 PF12920 TcdA/TcdB pore forming domain IH404_RS02065 PF11713 Peptidase C80 family IH404_RS02065 PF12919 TcdA/TcdB catalytic glycosyltransferase domain IH404_RS02075 PF00158 Sigma-54 interaction domain IH404_RS02080 PF03180 NLPA lipoprotein IH404_RS02085 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS02090 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS02095 PF00005 ABC transporter IH404_RS02100 PF00497 Bacterial extracellular solute-binding proteins, family 3 IH404_RS02105 PF02463 RecF/RecN/SMC N terminal domain IH404_RS02120 PF00873 AcrB/AcrD/AcrF family IH404_RS02140 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS02145 PF00005 ABC transporter IH404_RS02145 PF09383 NIL domain IH404_RS02150 PF03180 NLPA lipoprotein IH404_RS02155 PF00296 Luciferase-like monooxygenase IH404_RS02160 PF08028 Acyl-CoA dehydrogenase, C-terminal domain IH404_RS02160 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IH404_RS02165 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IH404_RS02165 PF08028 Acyl-CoA dehydrogenase, C-terminal domain IH404_RS02175 PF00005 ABC transporter IH404_RS02180 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS02185 PF00497 Bacterial extracellular solute-binding proteins, family 3 IH404_RS02190 PF00291 Pyridoxal-phosphate dependent enzyme IH404_RS02195 PF00132 Bacterial transferase hexapeptide (six repeats) IH404_RS02200 PF02028 BCCT, betaine/carnitine/choline family transporter IH404_RS02205 PF00248 Aldo/keto reductase family IH404_RS02210 PF02668 Taurine catabolism dioxygenase TauD, TfdA family IH404_RS02215 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS02220 PF00005 ABC transporter IH404_RS02225 PF04069 Substrate binding domain of ABC-type glycine betaine transport system IH404_RS02230 PF04262 Glutamate-cysteine ligase IH404_RS02240 PF09371 Tex-like protein N-terminal domain IH404_RS02240 PF00575 S1 RNA binding domain IH404_RS02240 PF17674 HHH domain IH404_RS02240 PF16921 Tex protein YqgF-like domain IH404_RS02245 PF00072 Response regulator receiver domain IH404_RS02245 PF00486 Transcriptional regulatory protein, C terminal IH404_RS02250 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS02250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS02250 PF00672 HAMP domain IH404_RS02255 PF08443 RimK-like ATP-grasp domain IH404_RS02255 PF18030 RimK PreATP-grasp domain IH404_RS02260 PF08443 RimK-like ATP-grasp domain IH404_RS02260 PF18030 RimK PreATP-grasp domain IH404_RS02265 PF00563 EAL domain IH404_RS02265 PF08495 FIST N domain IH404_RS02265 PF00990 Diguanylate cyclase, GGDEF domain IH404_RS02265 PF10442 FIST C domain IH404_RS02270 PF01479 S4 domain IH404_RS02280 PF01430 Hsp33 protein IH404_RS02285 PF01293 Phosphoenolpyruvate carboxykinase IH404_RS02310 PF02661 Fic/DOC family IH404_RS02320 PF09382 RQC domain IH404_RS02320 PF16124 RecQ zinc-binding IH404_RS02320 PF00270 DEAD/DEAH box helicase IH404_RS02320 PF00570 HRDC domain IH404_RS02320 PF00271 Helicase conserved C-terminal domain IH404_RS02335 PF00384 Molybdopterin oxidoreductase IH404_RS02340 PF02634 FdhD/NarQ family IH404_RS02345 PF01476 LysM domain IH404_RS02345 PF04972 BON domain IH404_RS02350 PF13419 Haloacid dehalogenase-like hydrolase IH404_RS02355 PF00293 NUDIX domain IH404_RS02360 PF00459 Inositol monophosphatase family IH404_RS02370 PF00158 Sigma-54 interaction domain IH404_RS02370 PF00072 Response regulator receiver domain IH404_RS02370 PF02954 Bacterial regulatory protein, Fis family IH404_RS02375 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS02375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS02375 PF02743 Cache domain IH404_RS02380 PF04321 RmlD substrate binding domain IH404_RS02385 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase IH404_RS02390 PF00483 Nucleotidyl transferase IH404_RS02395 PF16363 GDP-mannose 4,6 dehydratase IH404_RS02400 PF00202 Aminotransferase class-III IH404_RS02405 PF04371 Porphyromonas-type peptidyl-arginine deiminase IH404_RS02415 PF00593 TonB dependent receptor IH404_RS02415 PF07715 TonB-dependent Receptor Plug Domain IH404_RS02420 PF03573 outer membrane porin, OprD family IH404_RS02460 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS02465 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS02470 PF00497 Bacterial extracellular solute-binding proteins, family 3 IH404_RS02475 PF00005 ABC transporter IH404_RS02480 PF00324 Amino acid permease IH404_RS02515 PF04362 Bacterial Fe(2+) trafficking IH404_RS02520 PF10576 Iron-sulfur binding domain of endonuclease III IH404_RS02520 PF00730 HhH-GPD superfamily base excision DNA repair protein IH404_RS02520 PF14815 NUDIX domain IH404_RS02520 PF00633 Helix-hairpin-helix motif IH404_RS02530 PF07690 Major Facilitator Superfamily IH404_RS02535 PF00475 Imidazoleglycerol-phosphate dehydratase IH404_RS02540 PF00117 Glutamine amidotransferase class-I IH404_RS02550 PF00977 Histidine biosynthesis protein IH404_RS02555 PF00977 Histidine biosynthesis protein IH404_RS02565 PF04748 Divergent polysaccharide deacetylase IH404_RS02570 PF13180 PDZ domain IH404_RS02570 PF03572 Peptidase family S41 IH404_RS02575 PF01551 Peptidase family M23 IH404_RS02580 PF01676 Metalloenzyme superfamily IH404_RS02580 PF06415 BPG-independent PGAM N-terminus (iPGM_N) IH404_RS02585 PF00581 Rhodanese-like domain IH404_RS02590 PF00462 Glutaredoxin IH404_RS02595 PF02556 Preprotein translocase subunit SecB IH404_RS02600 PF00588 SpoU rRNA Methylase family IH404_RS02610 PF00072 Response regulator receiver domain IH404_RS02610 PF00158 Sigma-54 interaction domain IH404_RS02610 PF02954 Bacterial regulatory protein, Fis family IH404_RS02615 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS02615 PF00989 PAS fold IH404_RS02615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS02620 PF01817 Chorismate mutase type II IH404_RS02625 PF03951 Glutamine synthetase, beta-Grasp domain IH404_RS02625 PF00120 Glutamine synthetase, catalytic domain IH404_RS02630 PF02926 THUMP domain IH404_RS02630 PF02568 Thiamine biosynthesis protein (ThiI) IH404_RS02635 PF00679 Elongation factor G C-terminus IH404_RS02635 PF00009 Elongation factor Tu GTP binding domain IH404_RS02635 PF03144 Elongation factor Tu domain 2 IH404_RS02645 PF00343 Carbohydrate phosphorylase IH404_RS02650 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain IH404_RS02660 PF08212 Lipocalin-like domain IH404_RS02665 PF01979 Amidohydrolase family IH404_RS02670 PF07702 UTRA domain IH404_RS02670 PF00392 Bacterial regulatory proteins, gntR family IH404_RS02675 PF05962 HutD IH404_RS02680 PF17391 Urocanase N-terminal domain IH404_RS02680 PF17392 Urocanase C-terminal domain IH404_RS02680 PF01175 Urocanase Rossmann-like domain IH404_RS02685 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin IH404_RS02695 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS02700 PF00571 CBS domain IH404_RS02700 PF00005 ABC transporter IH404_RS02705 PF00221 Aromatic amino acid lyase IH404_RS02710 PF00221 Aromatic amino acid lyase IH404_RS02715 PF00324 Amino acid permease IH404_RS02720 PF01979 Amidohydrolase family IH404_RS02730 PF04069 Substrate binding domain of ABC-type glycine betaine transport system IH404_RS02735 PF07859 alpha/beta hydrolase fold IH404_RS02740 PF00561 alpha/beta hydrolase fold IH404_RS02745 PF02580 D-Tyr-tRNA(Tyr) deacylase IH404_RS02750 PF04349 Periplasmic glucan biosynthesis protein, MdoG IH404_RS02755 PF00535 Glycosyl transferase family 2 IH404_RS02760 PF00497 Bacterial extracellular solute-binding proteins, family 3 IH404_RS02765 PF00497 Bacterial extracellular solute-binding proteins, family 3 IH404_RS02770 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS02775 PF00005 ABC transporter IH404_RS02780 PF00672 HAMP domain IH404_RS02780 PF16591 Helical bimodular sensor domain IH404_RS02780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IH404_RS02785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IH404_RS02785 PF00672 HAMP domain IH404_RS02785 PF16591 Helical bimodular sensor domain IH404_RS02795 PF00902 Sec-independent protein translocase protein (TatC) IH404_RS02800 PF02416 mttA/Hcf106 family IH404_RS02805 PF02416 mttA/Hcf106 family IH404_RS02810 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase IH404_RS02815 PF01502 Phosphoribosyl-AMP cyclohydrolase IH404_RS02820 PF03109 ABC1 family IH404_RS02830 PF01209 ubiE/COQ5 methyltransferase family IH404_RS02855 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus IH404_RS02860 PF00561 alpha/beta hydrolase fold IH404_RS02865 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus IH404_RS02875 PF07724 AAA domain (Cdc48 subfamily) IH404_RS02875 PF00004 ATPase family associated with various cellular activities (AAA) IH404_RS02880 PF00227 Proteasome subunit IH404_RS02890 PF00750 tRNA synthetases class I (R) IH404_RS02890 PF05746 DALR anticodon binding domain IH404_RS02890 PF03485 Arginyl tRNA synthetase N terminal domain IH404_RS02895 PF18074 Primosomal protein N C-terminal domain IH404_RS02895 PF18319 PriA DNA helicase Cys-rich region (CRR) domain IH404_RS02895 PF00270 DEAD/DEAH box helicase IH404_RS02895 PF17764 3′ DNA-binding domain (3′BD) IH404_RS02895 PF00271 Helicase conserved C-terminal domain IH404_RS02900 PF01197 Ribosomal protein L31 IH404_RS02910 PF03949 Malic enzyme, NAD binding domain IH404_RS02910 PF00390 Malic enzyme, N-terminal domain IH404_RS02915 PF00905 Penicillin binding protein transpeptidase domain IH404_RS02915 PF00912 Transglycosylase IH404_RS02915 PF17092 Penicillin-binding protein OB-like domain IH404_RS02920 PF11104 Type IV pilus assembly protein PilM; IH404_RS02930 PF04350 Pilus assembly protein, PilO IH404_RS02935 PF07660 Secretin and TonB N terminus short domain IH404_RS02935 PF00263 Bacterial type II and III secretion system protein IH404_RS02935 PF03958 Bacterial type II/III secretion system short domain IH404_RS02935 PF11741 AMIN domain IH404_RS02940 PF01202 Shikimate kinase IH404_RS02945 PF01761 3-dehydroquinate synthase IH404_RS02955 PF04898 Glutamate synthase central domain IH404_RS02955 PF00310 Glutamine amidotransferases class-II IH404_RS02955 PF01493 GXGXG motif IH404_RS02955 PF01645 Conserved region in glutamate synthase IH404_RS02960 PF07992 Pyridine nucleotide-disulphide oxidoreductase IH404_RS02960 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster IH404_RS02965 PF01208 Uroporphyrinogen decarboxylase (URO-D) IH404_RS02970 PF07690 Major Facilitator Superfamily IH404_RS02975 PF03466 LysR substrate binding domain IH404_RS02975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS02985 PF00109 Beta-ketoacyl synthase, N-terminal domain IH404_RS02985 PF02801 Beta-ketoacyl synthase, C-terminal domain IH404_RS03000 PF00109 Beta-ketoacyl synthase, N-terminal domain IH404_RS03000 PF02801 Beta-ketoacyl synthase, C-terminal domain IH404_RS03010 PF08241 Methyltransferase domain IH404_RS03035 PF00221 Aromatic amino acid lyase IH404_RS03050 PF07977 FabA-like domain IH404_RS03060 PF00550 Phosphopantetheine attachment site IH404_RS03065 PF00550 Phosphopantetheine attachment site IH404_RS03080 PF13614 AAA domain IH404_RS03090 PF00085 Thioredoxin IH404_RS03100 PF02696 Uncharacterized ACR, YdiU/UPF0061 family IH404_RS03105 PF00924 Mechanosensitive ion channel IH404_RS03105 PF12794 Mechanosensitive ion channel inner membrane domain 1 IH404_RS03105 PF12795 Mechanosensitive ion channel porin domain IH404_RS03110 PF02080 TrkA-C domain IH404_RS03110 PF03471 Transporter associated domain IH404_RS03110 PF00999 Sodium/hydrogen exchanger family IH404_RS03115 PF00672 HAMP domain IH404_RS03115 PF12729 Four helix bundle sensory module for signal transduction IH404_RS03115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IH404_RS03130 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IH404_RS03130 PF02770 Acyl-CoA dehydrogenase, middle domain IH404_RS03130 PF12806 Acetyl-CoA dehydrogenase C-terminal like IH404_RS03130 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IH404_RS03135 PF01619 Proline dehydrogenase IH404_RS03135 PF14850 DNA-binding domain of Proline dehydrogenase IH404_RS03135 PF00171 Aldehyde dehydrogenase family IH404_RS03135 PF18327 Proline utilization A proline dehydrogenase N-terminal domain IH404_RS03140 PF00474 Sodium:solute symporter family IH404_RS03145 PF04717 Type VI secretion system, phage-baseplate injector IH404_RS03155 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ IH404_RS03160 PF01625 Peptide methionine sulfoxide reductase IH404_RS03165 PF03707 Bacterial signalling protein N terminal repeat IH404_RS03165 PF00990 Diguanylate cyclase, GGDEF domain IH404_RS03165 PF00563 EAL domain IH404_RS03170 PF00364 Biotin-requiring enzyme IH404_RS03170 PF02817 e3 binding domain IH404_RS03170 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IH404_RS03175 PF00456 Transketolase, thiamine diphosphate binding domain IH404_RS03175 PF17831 Pyruvate dehydrogenase E1 component middle domain IH404_RS03180 PF08335 GlnD PII-uridylyltransferase IH404_RS03180 PF03710 Glutamate-ammonia ligase adenylyltransferase IH404_RS03185 PF01075 Glycosyltransferase family 9 (heptosyltransferase) IH404_RS03190 PF01075 Glycosyltransferase family 9 (heptosyltransferase) IH404_RS03195 PF13439 Glycosyltransferase Family 4 IH404_RS03195 PF00534 Glycosyl transferases group 1 IH404_RS03215 PF00069 Protein kinase domain IH404_RS03220 PF00593 TonB dependent receptor IH404_RS03220 PF07715 TonB-dependent Receptor Plug Domain IH404_RS03230 PF02543 Carbamoyltransferase N-terminus IH404_RS03230 PF16861 Carbamoyltransferase C-terminus IH404_RS03245 PF13579 Glycosyl transferase 4-like domain IH404_RS03245 PF00534 Glycosyl transferases group 1 IH404_RS03250 PF00535 Glycosyl transferase family 2 IH404_RS03255 PF04932 O-Antigen ligase IH404_RS03260 PF00664 ABC transporter transmembrane region IH404_RS03260 PF00005 ABC transporter IH404_RS03265 PF01467 Cytidylyltransferase-like IH404_RS03265 PF00294 pfkB family carbohydrate kinase IH404_RS03270 PF16363 GDP-mannose 4,6 dehydratase IH404_RS03280 PF00248 Aldo/keto reductase family IH404_RS03285 PF01266 FAD dependent oxidoreductase IH404_RS03290 PF00893 Small Multidrug Resistance protein IH404_RS03295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS03295 PF03466 LysR substrate binding domain IH404_RS03300 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) IH404_RS03305 PF02321 Outer membrane efflux protein IH404_RS03310 PF13667 ThiC-associated domain IH404_RS03310 PF01964 Radical SAM ThiC family IH404_RS03325 PF00293 NUDIX domain IH404_RS03335 PF00149 Calcineurin-like phosphoesterase IH404_RS03340 PF05728 Uncharacterised protein family (UPF0227) IH404_RS03345 PF01751 Toprim domain IH404_RS03345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS03345 PF00204 DNA gyrase B IH404_RS03345 PF00986 DNA gyrase B subunit, carboxyl terminus IH404_RS03355 PF00521 DNA gyrase/topoisomerase IV, subunit A IH404_RS03355 PF03989 DNA gyrase C-terminal domain, beta-propeller IH404_RS03375 PF02666 Phosphatidylserine decarboxylase IH404_RS03380 PF00581 Rhodanese-like domain IH404_RS03390 PF01618 MotA/TolQ/ExbB proton channel family IH404_RS03395 PF00691 OmpA family IH404_RS03395 PF13677 Membrane MotB of proton-channel complex MotA/MotB IH404_RS03405 PF03193 RsgA GTPase IH404_RS03410 PF00929 Exonuclease IH404_RS03415 PF03458 UPF0126 domain IH404_RS03420 PF08331 Domain of unknown function (DUF1730) IH404_RS03425 PF01256 Carbohydrate kinase IH404_RS03425 PF03853 YjeF-related protein N-terminus IH404_RS03430 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE IH404_RS03435 PF11741 AMIN domain IH404_RS03435 PF01520 N-acetylmuramoyl-L-alanine amidase IH404_RS03440 PF08676 MutL C terminal dimerisation domain IH404_RS03440 PF01119 DNA mismatch repair protein, C-terminal domain IH404_RS03450 PF17209 Hfq protein IH404_RS03455 PF01926 50S ribosome-binding GTPase IH404_RS03455 PF13167 GTP-binding GTPase N-terminal IH404_RS03455 PF16360 GTP-binding GTPase Middle Region IH404_RS03460 PF01145 SPFH domain / Band 7 family IH404_RS03465 PF01145 SPFH domain / Band 7 family IH404_RS03470 PF13393 Histidyl-tRNA synthetase IH404_RS03475 PF00709 Adenylosuccinate synthetase IH404_RS03480 PF00672 HAMP domain IH404_RS03480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IH404_RS03480 PF17200 Single Cache domain 2 IH404_RS03485 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS03490 PF01547 Bacterial extracellular solute-binding protein IH404_RS03505 PF00575 S1 RNA binding domain IH404_RS03505 PF17876 Cold shock domain IH404_RS03505 PF08461 Ribonuclease R winged-helix domain IH404_RS03505 PF08206 Ribonuclease B OB domain IH404_RS03505 PF00773 RNB domain IH404_RS03510 PF08032 RNA 2'-O ribose methyltransferase substrate binding IH404_RS03510 PF00588 SpoU rRNA Methylase family IH404_RS03515 PF01250 Ribosomal protein S6 IH404_RS03520 PF01084 Ribosomal protein S18 IH404_RS03530 PF01281 Ribosomal protein L9, N-terminal domain IH404_RS03530 PF03948 Ribosomal protein L9, C-terminal domain IH404_RS03535 PF00772 DnaB-like helicase N terminal domain IH404_RS03535 PF03796 DnaB-like helicase C terminal domain IH404_RS03545 PF08497 Radical SAM N-terminal IH404_RS03545 PF04055 Radical SAM superfamily IH404_RS03545 PF11842 Domain of unknown function (DUF3362) IH404_RS03565 PF04168 A predicted alpha-helical domain with a conserved ER motif. IH404_RS03565 PF14403 Circularly permuted ATP-grasp type 2 IH404_RS03580 PF00127 Copper binding proteins, plastocyanin/azurin family IH404_RS03585 PF02540 NAD synthase IH404_RS03590 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family IH404_RS03590 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain IH404_RS03595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS03595 PF03466 LysR substrate binding domain IH404_RS03600 PF00171 Aldehyde dehydrogenase family IH404_RS03605 PF01266 FAD dependent oxidoreductase IH404_RS03610 PF13458 Periplasmic binding protein IH404_RS03615 PF02653 Branched-chain amino acid transport system / permease component IH404_RS03620 PF11862 Domain of unknown function (DUF3382) IH404_RS03620 PF02653 Branched-chain amino acid transport system / permease component IH404_RS03625 PF00005 ABC transporter IH404_RS03625 PF12399 Branched-chain amino acid ATP-binding cassette transporter IH404_RS03630 PF00005 ABC transporter IH404_RS03635 PF00106 short chain dehydrogenase IH404_RS03650 PF04955 HupE / UreJ protein IH404_RS03655 PF02492 CobW/HypB/UreG, nucleotide-binding domain IH404_RS03660 PF01730 UreF IH404_RS03665 PF05194 UreE urease accessory protein, C-terminal domain IH404_RS03665 PF02814 UreE urease accessory protein, N-terminal domain IH404_RS03670 PF00877 NlpC/P60 family IH404_RS03675 PF00440 Bacterial regulatory proteins, tetR family IH404_RS03685 PF05170 AsmA family IH404_RS03695 PF00892 EamA-like transporter family IH404_RS03705 PF07769 psiF repeat IH404_RS03715 PF00012 Hsp70 protein IH404_RS03720 PF00226 DnaJ domain IH404_RS03720 PF01556 DnaJ C terminal domain IH404_RS03730 PF00449 Urease alpha-subunit, N-terminal domain IH404_RS03730 PF01979 Amidohydrolase family IH404_RS03735 PF00699 Urease beta subunit IH404_RS03740 PF13673 Acetyltransferase (GNAT) domain IH404_RS03750 PF00547 Urease, gamma subunit IH404_RS03755 PF01774 UreD urease accessory protein IH404_RS03760 PF00005 ABC transporter IH404_RS03765 PF12399 Branched-chain amino acid ATP-binding cassette transporter IH404_RS03765 PF00005 ABC transporter IH404_RS03775 PF02653 Branched-chain amino acid transport system / permease component IH404_RS03780 PF13458 Periplasmic binding protein IH404_RS03805 PF01032 FecCD transport family IH404_RS03815 PF00005 ABC transporter IH404_RS03820 PF00593 TonB dependent receptor IH404_RS03820 PF07715 TonB-dependent Receptor Plug Domain IH404_RS03850 PF01381 Helix-turn-helix IH404_RS03855 PF05973 Phage derived protein Gp49-like (DUF891) IH404_RS03860 PF02571 Precorrin-6x reductase CbiJ/CobK IH404_RS03865 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IH404_RS03870 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IH404_RS03870 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IH404_RS03875 PF02570 Precorrin-8X methylmutase IH404_RS03880 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IH404_RS03885 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IH404_RS03895 PF01914 MarC family integral membrane protein IH404_RS03900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS03900 PF00672 HAMP domain IH404_RS03900 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS03900 PF01627 Hpt domain IH404_RS03900 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IH404_RS03900 PF00072 Response regulator receiver domain IH404_RS03905 PF02844 Phosphoribosylglycinamide synthetase, N domain IH404_RS03905 PF02843 Phosphoribosylglycinamide synthetase, C domain IH404_RS03905 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain IH404_RS03910 PF01808 AICARFT/IMPCHase bienzyme IH404_RS03910 PF02142 MGS-like domain IH404_RS03915 PF02954 Bacterial regulatory protein, Fis family IH404_RS03920 PF01207 Dihydrouridine synthase (Dus) IH404_RS03935 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IH404_RS03935 PF02785 Biotin carboxylase C-terminal domain IH404_RS03935 PF00289 Biotin carboxylase, N-terminal domain IH404_RS03940 PF00364 Biotin-requiring enzyme IH404_RS03945 PF01220 Dehydroquinase class II IH404_RS03950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IH404_RS03955 PF00990 Diguanylate cyclase, GGDEF domain IH404_RS03955 PF00072 Response regulator receiver domain IH404_RS03965 PF00293 NUDIX domain IH404_RS03970 PF01253 Translation initiation factor SUI1 IH404_RS03975 PF17810 Arginine decarboxylase helical bundle domain IH404_RS03975 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain IH404_RS03975 PF17944 Arginine decarboxylase C-terminal helical extension IH404_RS03980 PF01554 MatE IH404_RS03985 PF07703 Alpha-2-macroglobulin bait region domain IH404_RS03985 PF07678 A-macroglobulin TED domain IH404_RS03985 PF01835 MG2 domain IH404_RS03985 PF00207 Alpha-2-macroglobulin family IH404_RS03985 PF17962 Bacterial macroglobulin domain 6 IH404_RS03985 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain IH404_RS03985 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain IH404_RS03985 PF11974 Bacterial alpha-2-macroglobulin MG3 domain IH404_RS03985 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain IH404_RS03995 PF06832 Penicillin-Binding Protein C-terminus Family IH404_RS03995 PF00905 Penicillin binding protein transpeptidase domain IH404_RS03995 PF00912 Transglycosylase IH404_RS04005 PF13847 Methyltransferase domain IH404_RS04025 PF08447 PAS fold IH404_RS04025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS04025 PF08448 PAS fold IH404_RS04040 PF00072 Response regulator receiver domain IH404_RS04040 PF00196 Bacterial regulatory proteins, luxR family IH404_RS04065 PF00437 Type II/IV secretion system protein IH404_RS04075 PF04972 BON domain IH404_RS04075 PF13629 Pilus formation protein N terminal region IH404_RS04075 PF00263 Bacterial type II and III secretion system protein IH404_RS04090 PF02954 Bacterial regulatory protein, Fis family IH404_RS04090 PF00072 Response regulator receiver domain IH404_RS04090 PF00158 Sigma-54 interaction domain IH404_RS04115 PF02803 Thiolase, C-terminal domain IH404_RS04115 PF00108 Thiolase, N-terminal domain IH404_RS04125 PF00376 MerR family regulatory protein IH404_RS04125 PF09278 MerR, DNA binding IH404_RS04130 PF00403 Heavy-metal-associated domain IH404_RS04145 PF07690 Major Facilitator Superfamily IH404_RS04155 PF00107 Zinc-binding dehydrogenase IH404_RS04155 PF08240 Alcohol dehydrogenase GroES-like domain IH404_RS04160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS04160 PF03466 LysR substrate binding domain IH404_RS04170 PF07690 Major Facilitator Superfamily IH404_RS04175 PF00962 Adenosine/AMP deaminase IH404_RS04180 PF01699 Sodium/calcium exchanger protein IH404_RS04185 PF01979 Amidohydrolase family IH404_RS04195 PF01205 Uncharacterized protein family UPF0029 IH404_RS04195 PF09186 Domain of unknown function (DUF1949) IH404_RS04200 PF08362 YcdC-like protein, C-terminal region IH404_RS04200 PF00440 Bacterial regulatory proteins, tetR family IH404_RS04205 PF00860 Permease family IH404_RS04210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS04210 PF03466 LysR substrate binding domain IH404_RS04215 PF00202 Aminotransferase class-III IH404_RS04220 PF00171 Aldehyde dehydrogenase family IH404_RS04250 PF04403 Paraquat-inducible protein A IH404_RS04255 PF04403 Paraquat-inducible protein A IH404_RS04260 PF02470 MlaD protein IH404_RS04285 PF00583 Acetyltransferase (GNAT) family IH404_RS04295 PF00484 Carbonic anhydrase IH404_RS04310 PF04185 Phosphoesterase family IH404_RS04315 PF02667 Short chain fatty acid transporter IH404_RS04320 PF00083 Sugar (and other) transporter IH404_RS04320 PF08946 Osmosensory transporter coiled coil IH404_RS04325 PF02447 GntP family permease IH404_RS04330 PF01545 Cation efflux family IH404_RS04335 PF02321 Outer membrane efflux protein IH404_RS04340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IH404_RS04340 PF00529 HlyD membrane-fusion protein of T1SS IH404_RS04345 PF00873 AcrB/AcrD/AcrF family IH404_RS04350 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS04350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS04350 PF00672 HAMP domain IH404_RS04355 PF00486 Transcriptional regulatory protein, C terminal IH404_RS04355 PF00072 Response regulator receiver domain IH404_RS04360 PF03573 outer membrane porin, OprD family IH404_RS04370 PF13426 PAS domain IH404_RS04370 PF08447 PAS fold IH404_RS04370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IH404_RS04390 PF01820 D-ala D-ala ligase N-terminus IH404_RS04390 PF07478 D-ala D-ala ligase C-terminus IH404_RS04395 PF02578 Multi-copper polyphenol oxidoreductase laccase IH404_RS04405 PF02567 Phenazine biosynthesis-like protein IH404_RS04415 PF08281 Sigma-70, region 4 IH404_RS04415 PF04542 Sigma-70 region 2 IH404_RS04425 PF00771 FHIPEP family IH404_RS04435 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IH404_RS04435 PF18269 T3SS EscN ATPase C-terminal domain IH404_RS04435 PF02874 ATP synthase alpha/beta family, beta-barrel domain IH404_RS04450 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IH404_RS04455 PF00813 FliP family IH404_RS04460 PF01313 Bacterial export proteins, family 3 IH404_RS04470 PF01312 FlhB HrpN YscU SpaS Family IH404_RS04480 PF00263 Bacterial type II and III secretion system protein IH404_RS04480 PF03958 Bacterial type II/III secretion system short domain IH404_RS04505 PF01514 Secretory protein of YscJ/FliF family IH404_RS04520 PF00158 Sigma-54 interaction domain IH404_RS04520 PF02954 Bacterial regulatory protein, Fis family IH404_RS04525 PF01926 50S ribosome-binding GTPase IH404_RS04525 PF06071 Protein of unknown function (DUF933) IH404_RS04530 PF01195 Peptidyl-tRNA hydrolase IH404_RS04535 PF14693 Ribosomal protein TL5, C-terminal domain IH404_RS04535 PF01386 Ribosomal L25p family IH404_RS04540 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase IH404_RS04540 PF14572 Phosphoribosyl synthetase-associated domain IH404_RS04550 PF08544 GHMP kinases C terminal IH404_RS04550 PF00288 GHMP kinases N terminal domain IH404_RS04555 PF03550 Outer membrane lipoprotein LolB IH404_RS04565 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain IH404_RS04565 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain IH404_RS04565 PF01488 Shikimate / quinate 5-dehydrogenase IH404_RS04570 PF03462 PCRF domain IH404_RS04570 PF00472 RF-1 domain IH404_RS04575 PF17827 PrmC N-terminal domain IH404_RS04575 PF05175 Methyltransferase small domain IH404_RS04580 PF00899 ThiF family IH404_RS04585 PF01177 Asp/Glu/Hydantoin racemase IH404_RS04590 PF09411 Lipid A 3-O-deacylase (PagL) IH404_RS04615 PF07992 Pyridine nucleotide-disulphide oxidoreductase IH404_RS04615 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster IH404_RS04620 PF00106 short chain dehydrogenase IH404_RS04630 PF03441 FAD binding domain of DNA photolyase IH404_RS04630 PF00875 DNA photolyase IH404_RS04635 PF13411 MerR HTH family regulatory protein IH404_RS04650 PF01593 Flavin containing amine oxidoreductase IH404_RS04655 PF01370 NAD dependent epimerase/dehydratase family IH404_RS04655 PF08338 Domain of unknown function (DUF1731) IH404_RS04660 PF00762 Ferrochelatase IH404_RS04665 PF00593 TonB dependent receptor IH404_RS04665 PF07715 TonB-dependent Receptor Plug Domain IH404_RS04670 PF13180 PDZ domain IH404_RS04675 PF01784 NIF3 (NGG1p interacting factor 3) IH404_RS04680 PF01507 Phosphoadenosine phosphosulfate reductase family IH404_RS04685 PF00009 Elongation factor Tu GTP binding domain IH404_RS04690 PF01553 Acyltransferase IH404_RS04695 PF07085 DRTGG domain IH404_RS04695 PF01515 Phosphate acetyl/butaryl transferase IH404_RS04705 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IH404_RS04710 PF01649 Ribosomal protein S20 IH404_RS04715 PF03023 Lipid II flippase MurJ IH404_RS04720 PF01687 Riboflavin kinase IH404_RS04720 PF06574 FAD synthetase IH404_RS04725 PF06827 Zinc finger found in FPG and IleRS IH404_RS04725 PF00133 tRNA synthetases class I (I, L, M and V) IH404_RS04725 PF08264 Anticodon-binding domain of tRNA IH404_RS04730 PF01252 Signal peptidase (SPase) II IH404_RS04735 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IH404_RS04740 PF02401 LytB protein IH404_RS04745 PF07963 Prokaryotic N-terminal methylation motif IH404_RS04745 PF08334 Type II secretion system (T2SS), protein G IH404_RS04765 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor IH404_RS04765 PF07963 Prokaryotic N-terminal methylation motif IH404_RS04770 PF01266 FAD dependent oxidoreductase IH404_RS04780 PF13525 Outer membrane lipoprotein IH404_RS04785 PF00849 RNA pseudouridylate synthase IH404_RS04785 PF01479 S4 domain IH404_RS04790 PF02578 Multi-copper polyphenol oxidoreductase laccase IH404_RS04795 PF17871 AAA lid domain IH404_RS04795 PF10431 C-terminal, D2-small domain, of ClpB protein IH404_RS04795 PF07724 AAA domain (Cdc48 subfamily) IH404_RS04795 PF00004 ATPase family associated with various cellular activities (AAA) IH404_RS04795 PF02861 Clp amino terminal domain, pathogenicity island component IH404_RS04820 PF00589 Phage integrase family IH404_RS04870 PF13018 Extended Signal Peptide of Type V secretion system IH404_RS04870 PF03895 YadA-like membrane anchor domain IH404_RS04870 PF05658 Head domain of trimeric autotransporter adhesin IH404_RS04870 PF05662 Coiled stalk of trimeric autotransporter adhesin IH404_RS04875 PF02954 Bacterial regulatory protein, Fis family IH404_RS04875 PF00158 Sigma-54 interaction domain IH404_RS04875 PF00072 Response regulator receiver domain IH404_RS04880 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS04880 PF00989 PAS fold IH404_RS04880 PF00672 HAMP domain IH404_RS04880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS04880 PF18698 Histidine kinase sensor domain IH404_RS04885 PF03050 Transposase IS66 family IH404_RS04885 PF13817 IS66 C-terminal element IH404_RS04885 PF13007 Transposase C of IS166 homeodomain IH404_RS04885 PF13005 zinc-finger binding domain of transposase IS66 IH404_RS04905 PF02753 Pili assembly chaperone PapD, C-terminal domain IH404_RS04905 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain IH404_RS04910 PF13953 PapC C-terminal domain IH404_RS04910 PF13954 PapC N-terminal domain IH404_RS04910 PF00577 Outer membrane usher protein IH404_RS04955 PF00072 Response regulator receiver domain IH404_RS04955 PF00196 Bacterial regulatory proteins, luxR family IH404_RS04960 PF00497 Bacterial extracellular solute-binding proteins, family 3 IH404_RS04960 PF00072 Response regulator receiver domain IH404_RS04960 PF01627 Hpt domain IH404_RS04960 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS04960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS04960 PF00989 PAS fold IH404_RS04965 PF00990 Diguanylate cyclase, GGDEF domain IH404_RS04965 PF00498 FHA domain IH404_RS04965 PF00563 EAL domain IH404_RS05160 PF00437 Type II/IV secretion system protein IH404_RS05185 PF00176 SNF2 family N-terminal domain IH404_RS05185 PF00271 Helicase conserved C-terminal domain IH404_RS05195 PF01396 Topoisomerase DNA binding C4 zinc finger IH404_RS05195 PF01131 DNA topoisomerase IH404_RS05195 PF01751 Toprim domain IH404_RS05240 PF03869 Arc-like DNA binding domain IH404_RS05245 PF04245 37-kD nucleoid-associated bacterial protein IH404_RS05255 PF03796 DnaB-like helicase C terminal domain IH404_RS05255 PF00772 DnaB-like helicase N terminal domain IH404_RS05280 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IH404_RS05290 PF07992 Pyridine nucleotide-disulphide oxidoreductase IH404_RS05315 PF03884 DNA gyrase inhibitor YacG IH404_RS05320 PF01121 Dephospho-CoA kinase IH404_RS05325 PF01478 Type IV leader peptidase family IH404_RS05325 PF06750 Bacterial Peptidase A24 N-terminal domain IH404_RS05330 PF00482 Type II secretion system (T2SS), protein F IH404_RS05335 PF00114 Pilin (bacterial filament) IH404_RS05335 PF07963 Prokaryotic N-terminal methylation motif IH404_RS05350 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain IH404_RS05350 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain IH404_RS05360 PF01510 N-acetylmuramoyl-L-alanine amidase IH404_RS05370 PF00672 HAMP domain IH404_RS05370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IH404_RS05370 PF17200 Single Cache domain 2 IH404_RS05380 PF01026 TatD related DNase IH404_RS05385 PF00356 Bacterial regulatory proteins, lacI family IH404_RS05385 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family IH404_RS05390 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IH404_RS05390 PF00381 PTS HPr component phosphorylation site IH404_RS05390 PF02896 PEP-utilising enzyme, TIM barrel domain IH404_RS05390 PF00391 PEP-utilising enzyme, mobile domain IH404_RS05390 PF05524 PEP-utilising enzyme, N-terminal IH404_RS05395 PF00294 pfkB family carbohydrate kinase IH404_RS05400 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit IH404_RS05400 PF02378 Phosphotransferase system, EIIC IH404_RS05405 PF09423 PhoD-like phosphatase IH404_RS05405 PF16655 PhoD-like phosphatase, N-terminal domain IH404_RS05410 PF00258 Flavodoxin IH404_RS05410 PF00667 FAD binding domain IH404_RS05410 PF00175 Oxidoreductase NAD-binding domain IH404_RS05415 PF07715 TonB-dependent Receptor Plug Domain IH404_RS05415 PF00593 TonB dependent receptor IH404_RS05420 PF13640 2OG-Fe(II) oxygenase superfamily IH404_RS05420 PF18331 PKHD-type hydroxylase C-terminal domain IH404_RS05430 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain IH404_RS05430 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain IH404_RS05435 PF00571 CBS domain IH404_RS05435 PF00005 ABC transporter IH404_RS05440 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS05445 PF04069 Substrate binding domain of ABC-type glycine betaine transport system IH404_RS05450 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS05455 PF03144 Elongation factor Tu domain 2 IH404_RS05455 PF16658 Class II release factor RF3, C-terminal domain IH404_RS05455 PF00009 Elongation factor Tu GTP binding domain IH404_RS05470 PF00593 TonB dependent receptor IH404_RS05470 PF07715 TonB-dependent Receptor Plug Domain IH404_RS05480 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IH404_RS05480 PF00005 ABC transporter IH404_RS05485 PF00005 ABC transporter IH404_RS05485 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IH404_RS05490 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS05490 PF12911 N-terminal TM domain of oligopeptide transport permease C IH404_RS05495 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS05500 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IH404_RS05505 PF03573 outer membrane porin, OprD family IH404_RS05510 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IH404_RS05515 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IH404_RS05520 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IH404_RS05535 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS05535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS05540 PF02954 Bacterial regulatory protein, Fis family IH404_RS05540 PF00072 Response regulator receiver domain IH404_RS05545 PF00005 ABC transporter IH404_RS05545 PF06472 ABC transporter transmembrane region 2 IH404_RS05560 PF00579 tRNA synthetases class I (W and Y) IH404_RS05565 PF03969 AFG1-like ATPase IH404_RS05575 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IH404_RS05575 PF02770 Acyl-CoA dehydrogenase, middle domain IH404_RS05575 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IH404_RS05580 PF00248 Aldo/keto reductase family IH404_RS05585 PF00572 Ribosomal protein L13 IH404_RS05590 PF00380 Ribosomal protein S9/S16 IH404_RS05595 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal IH404_RS05595 PF00355 Rieske [2Fe-2S] domain IH404_RS05600 PF00032 Cytochrome b(C-terminal)/b6/petD IH404_RS05600 PF00033 Cytochrome b/b6/petB IH404_RS05605 PF02167 Cytochrome C1 family IH404_RS05610 PF02798 Glutathione S-transferase, N-terminal domain IH404_RS05610 PF00043 Glutathione S-transferase, C-terminal domain IH404_RS05615 PF04386 Stringent starvation protein B IH404_RS05620 PF07729 FCD domain IH404_RS05620 PF00392 Bacterial regulatory proteins, gntR family IH404_RS05630 PF00701 Dihydrodipicolinate synthetase family IH404_RS05635 PF00171 Aldehyde dehydrogenase family IH404_RS05640 PF07690 Major Facilitator Superfamily IH404_RS05645 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus IH404_RS05645 PF08666 SAF domain IH404_RS05655 PF02627 Carboxymuconolactone decarboxylase family IH404_RS05660 PF01699 Sodium/calcium exchanger protein IH404_RS05665 PF03330 Lytic transglycolase IH404_RS05670 PF02934 GatB/GatE catalytic domain IH404_RS05670 PF02637 GatB domain IH404_RS05675 PF01425 Amidase IH404_RS05680 PF02686 Glu-tRNAGln amidotransferase C subunit IH404_RS05690 PF04085 rod shape-determining protein MreC IH404_RS05700 PF02545 Maf-like protein IH404_RS05705 PF10150 Ribonuclease E/G family IH404_RS05705 PF00575 S1 RNA binding domain IH404_RS05715 PF00795 Carbon-nitrogen hydrolase IH404_RS05720 PF01523 Putative modulator of DNA gyrase IH404_RS05725 PF04751 Protein of unknown function (DUF615) IH404_RS05730 PF01523 Putative modulator of DNA gyrase IH404_RS05740 PF10415 Fumarase C C-terminus IH404_RS05740 PF00206 Lyase IH404_RS05750 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain IH404_RS05750 PF02777 Iron/manganese superoxide dismutases, C-terminal domain IH404_RS05755 PF02535 ZIP Zinc transporter IH404_RS05760 PF00381 PTS HPr component phosphorylation site IH404_RS05765 PF03668 P-loop ATPase protein family IH404_RS05770 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IH404_RS05775 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein IH404_RS05780 PF04963 Sigma-54 factor, core binding domain IH404_RS05780 PF00309 Sigma-54 factor, Activator interacting domain (AID) IH404_RS05780 PF04552 Sigma-54, DNA binding domain IH404_RS05785 PF12399 Branched-chain amino acid ATP-binding cassette transporter IH404_RS05785 PF00005 ABC transporter IH404_RS05790 PF03968 OstA-like protein IH404_RS05805 PF00571 CBS domain IH404_RS05805 PF01380 SIS domain IH404_RS05810 PF00005 ABC transporter IH404_RS05815 PF02405 Permease MlaE IH404_RS05820 PF02470 MlaD protein IH404_RS05825 PF05494 MlaC protein IH404_RS05840 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IH404_RS05845 PF01634 ATP phosphoribosyltransferase IH404_RS05850 PF00815 Histidinol dehydrogenase IH404_RS05855 PF00155 Aminotransferase class I and II IH404_RS05860 PF00860 Permease family IH404_RS05870 PF00156 Phosphoribosyl transferase domain IH404_RS05885 PF06039 Malate:quinone oxidoreductase (Mqo) IH404_RS05925 PF02586 SOS response associated peptidase (SRAP) IH404_RS05930 PF01435 Peptidase family M48 IH404_RS05935 PF01169 Uncharacterized protein family UPF0016 IH404_RS05940 PF08468 Methyltransferase small domain N-terminal IH404_RS05940 PF05175 Methyltransferase small domain IH404_RS05945 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IH404_RS05945 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IH404_RS05950 PF01810 LysE type translocator IH404_RS05955 PF13193 AMP-binding enzyme C-terminal domain IH404_RS05955 PF00501 AMP-binding enzyme IH404_RS05965 PF07044 Protein of unknown function (DUF1329) IH404_RS05970 PF00069 Protein kinase domain IH404_RS05970 PF13191 AAA ATPase domain IH404_RS05980 PF02470 MlaD protein IH404_RS05985 PF04403 Paraquat-inducible protein A IH404_RS05995 PF00753 Metallo-beta-lactamase superfamily IH404_RS06000 PF00691 OmpA family IH404_RS06000 PF13488 Glycine zipper IH404_RS06005 PF04972 BON domain IH404_RS06010 PF13580 SIS domain IH404_RS06015 PF02021 Uncharacterised protein family UPF0102 IH404_RS06020 PF04348 LppC putative lipoprotein IH404_RS06025 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IH404_RS06035 PF02381 MraZ protein, putative antitoxin-like IH404_RS06040 PF01795 MraW methylase family IH404_RS06045 PF04999 Cell division protein FtsL IH404_RS06050 PF03717 Penicillin-binding Protein dimerisation domain IH404_RS06050 PF00905 Penicillin binding protein transpeptidase domain IH404_RS06055 PF02875 Mur ligase family, glutamate ligase domain IH404_RS06055 PF01225 Mur ligase family, catalytic domain IH404_RS06055 PF08245 Mur ligase middle domain IH404_RS06060 PF08245 Mur ligase middle domain IH404_RS06060 PF01225 Mur ligase family, catalytic domain IH404_RS06060 PF02875 Mur ligase family, glutamate ligase domain IH404_RS06065 PF00953 Glycosyl transferase family 4 IH404_RS06065 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 IH404_RS06070 PF02875 Mur ligase family, glutamate ligase domain IH404_RS06070 PF08245 Mur ligase middle domain IH404_RS06075 PF01098 Cell cycle protein IH404_RS06080 PF03033 Glycosyltransferase family 28 N-terminal domain IH404_RS06080 PF04101 Glycosyltransferase family 28 C-terminal domain IH404_RS06085 PF01225 Mur ligase family, catalytic domain IH404_RS06085 PF02875 Mur ligase family, glutamate ligase domain IH404_RS06085 PF08245 Mur ligase middle domain IH404_RS06090 PF07478 D-ala D-ala ligase C-terminus IH404_RS06090 PF01820 D-ala D-ala ligase N-terminus IH404_RS06095 PF08478 POTRA domain, FtsQ-type IH404_RS06095 PF03799 Cell division protein FtsQ IH404_RS06100 PF02491 SHS2 domain inserted in FTSA IH404_RS06105 PF12327 FtsZ family, C-terminal domain IH404_RS06105 PF00091 Tubulin/FtsZ family, GTPase domain IH404_RS06110 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase IH404_RS06115 PF00990 Diguanylate cyclase, GGDEF domain IH404_RS06115 PF01590 GAF domain IH404_RS06115 PF00563 EAL domain IH404_RS06115 PF00360 Phytochrome region IH404_RS06120 PF03573 outer membrane porin, OprD family IH404_RS06125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS06125 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS06125 PF00672 HAMP domain IH404_RS06130 PF00072 Response regulator receiver domain IH404_RS06130 PF00486 Transcriptional regulatory protein, C terminal IH404_RS06135 PF00873 AcrB/AcrD/AcrF family IH404_RS06140 PF13533 Biotin-lipoyl like IH404_RS06150 PF00497 Bacterial extracellular solute-binding proteins, family 3 IH404_RS06165 PF01584 CheW-like domain IH404_RS06165 PF00072 Response regulator receiver domain IH404_RS06170 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IH404_RS06170 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IH404_RS06175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS06175 PF03466 LysR substrate binding domain IH404_RS06180 PF02321 Outer membrane efflux protein IH404_RS06185 PF04632 Fusaric acid resistance protein family IH404_RS06195 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IH404_RS06195 PF00529 HlyD membrane-fusion protein of T1SS IH404_RS06205 PF07690 Major Facilitator Superfamily IH404_RS06210 PF03466 LysR substrate binding domain IH404_RS06210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS06225 PF00106 short chain dehydrogenase IH404_RS06240 PF01050 Mannose-6-phosphate isomerase IH404_RS06240 PF00483 Nucleotidyl transferase IH404_RS06245 PF11182 Alginate O-acetyl transferase AlgF IH404_RS06250 PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX IH404_RS06255 PF03062 MBOAT, membrane-bound O-acyltransferase family IH404_RS06260 PF05426 Alginate lyase IH404_RS06265 PF16824 C-terminal carbohydrate-binding module IH404_RS06265 PF16822 SGNH hydrolase-like domain, acetyltransferase AlgX IH404_RS06270 PF05048 Periplasmic copper-binding protein (NosD) IH404_RS06275 PF13372 Alginate export IH404_RS06280 PF08238 Sel1 repeat IH404_RS06285 PF07238 PilZ domain IH404_RS06295 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IH404_RS06295 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IH404_RS06295 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IH404_RS06300 PF03883 Peroxide stress protein YaaA IH404_RS06310 PF13638 PIN domain IH404_RS06310 PF02562 PhoH-like protein IH404_RS06315 PF03797 Autotransporter beta-domain IH404_RS06315 PF00082 Subtilase family IH404_RS06315 PF12951 Passenger-associated-transport-repeat IH404_RS06320 PF01967 MoaC family IH404_RS06325 PF02597 ThiS family IH404_RS06330 PF02391 MoaE protein IH404_RS06345 PF00271 Helicase conserved C-terminal domain IH404_RS06345 PF00270 DEAD/DEAH box helicase IH404_RS06350 PF02230 Phospholipase/Carboxylesterase IH404_RS06355 PF00497 Bacterial extracellular solute-binding proteins, family 3 IH404_RS06360 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS06365 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS06370 PF00005 ABC transporter IH404_RS06380 PF07690 Major Facilitator Superfamily IH404_RS06395 PF13953 PapC C-terminal domain IH404_RS06395 PF00577 Outer membrane usher protein IH404_RS06395 PF13954 PapC N-terminal domain IH404_RS06400 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain IH404_RS06430 PF00072 Response regulator receiver domain IH404_RS06430 PF01627 Hpt domain IH404_RS06430 PF00989 PAS fold IH404_RS06430 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS06430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS06430 PF00497 Bacterial extracellular solute-binding proteins, family 3 IH404_RS06435 PF00196 Bacterial regulatory proteins, luxR family IH404_RS06435 PF00072 Response regulator receiver domain IH404_RS06445 PF01541 GIY-YIG catalytic domain IH404_RS06450 PF07715 TonB-dependent Receptor Plug Domain IH404_RS06455 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family IH404_RS06465 PF04209 homogentisate 1,2-dioxygenase IH404_RS06470 PF01557 Fumarylacetoacetate (FAA) hydrolase family IH404_RS06475 PF13417 Glutathione S-transferase, N-terminal domain IH404_RS06480 PF07690 Major Facilitator Superfamily IH404_RS06485 PF13369 Transglutaminase-like superfamily IH404_RS06490 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain IH404_RS06490 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase IH404_RS06500 PF06146 Phosphate-starvation-inducible E IH404_RS06515 PF03315 Serine dehydratase beta chain IH404_RS06515 PF03313 Serine dehydratase alpha chain IH404_RS06520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS06520 PF03466 LysR substrate binding domain IH404_RS06530 PF07690 Major Facilitator Superfamily IH404_RS06535 PF03466 LysR substrate binding domain IH404_RS06535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS06540 PF07660 Secretin and TonB N terminus short domain IH404_RS06540 PF00593 TonB dependent receptor IH404_RS06540 PF07715 TonB-dependent Receptor Plug Domain IH404_RS06545 PF16220 Domain of unknown function (DUF4880) IH404_RS06545 PF04773 FecR protein IH404_RS06550 PF04542 Sigma-70 region 2 IH404_RS06550 PF08281 Sigma-70, region 4 IH404_RS06575 PF04773 FecR protein IH404_RS06575 PF16220 Domain of unknown function (DUF4880) IH404_RS06585 PF00462 Glutaredoxin IH404_RS06590 PF04245 37-kD nucleoid-associated bacterial protein IH404_RS06595 PF00216 Bacterial DNA-binding protein IH404_RS06600 PF05971 RNA methyltransferase IH404_RS06605 PF08264 Anticodon-binding domain of tRNA IH404_RS06605 PF00133 tRNA synthetases class I (I, L, M and V) IH404_RS06605 PF10458 Valyl tRNA synthetase tRNA binding arm IH404_RS06615 PF04364 DNA polymerase III chi subunit, HolC IH404_RS06620 PF00883 Cytosol aminopeptidase family, catalytic domain IH404_RS06620 PF02789 Cytosol aminopeptidase family, N-terminal domain IH404_RS06625 PF03739 Lipopolysaccharide export system permease LptF/LptG IH404_RS06630 PF03739 Lipopolysaccharide export system permease LptF/LptG IH404_RS06635 PF06421 GTP-binding protein LepA C-terminus IH404_RS06635 PF03144 Elongation factor Tu domain 2 IH404_RS06635 PF00009 Elongation factor Tu GTP binding domain IH404_RS06635 PF00679 Elongation factor G C-terminus IH404_RS06640 PF10502 Signal peptidase, peptidase S26 IH404_RS06645 PF14622 Ribonuclease-III-like IH404_RS06645 PF00035 Double-stranded RNA binding motif IH404_RS06650 PF07650 KH domain IH404_RS06650 PF01926 50S ribosome-binding GTPase IH404_RS06655 PF02565 Recombination protein O C terminal IH404_RS06655 PF11967 Recombination protein O N terminal IH404_RS06660 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ IH404_RS06665 PF07732 Multicopper oxidase IH404_RS06665 PF00394 Multicopper oxidase IH404_RS06665 PF07731 Multicopper oxidase IH404_RS06670 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region IH404_RS06675 PF08003 Protein of unknown function (DUF1698) IH404_RS06680 PF13649 Methyltransferase domain IH404_RS06685 PF07947 YhhN family IH404_RS06695 PF02190 ATP-dependent protease La (LON) substrate-binding domain IH404_RS06695 PF00004 ATPase family associated with various cellular activities (AAA) IH404_RS06695 PF05362 Lon protease (S16) C-terminal proteolytic domain IH404_RS06705 PF00563 EAL domain IH404_RS06705 PF00990 Diguanylate cyclase, GGDEF domain IH404_RS06705 PF03707 Bacterial signalling protein N terminal repeat IH404_RS06720 PF01011 PQQ enzyme repeat IH404_RS06725 PF07715 TonB-dependent Receptor Plug Domain IH404_RS06725 PF00593 TonB dependent receptor IH404_RS06730 PF09905 DNA-binding protein VF530 IH404_RS06740 PF08021 Siderophore-interacting FAD-binding domain IH404_RS06740 PF04954 Siderophore-interacting protein IH404_RS06745 PF03551 Transcriptional regulator PadR-like family IH404_RS06830 PF00324 Amino acid permease IH404_RS06835 PF01432 Peptidase family M3 IH404_RS06860 PF01645 Conserved region in glutamate synthase IH404_RS06865 PF01197 Ribosomal protein L31 IH404_RS06870 PF00072 Response regulator receiver domain IH404_RS06870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS06870 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS06870 PF08448 PAS fold IH404_RS06870 PF13188 PAS domain IH404_RS06875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS06875 PF17203 Single cache domain 3 IH404_RS06875 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain IH404_RS06880 PF03150 Di-haem cytochrome c peroxidase IH404_RS06880 PF14376 Haem-binding domain IH404_RS06880 PF00034 Cytochrome c IH404_RS06885 PF00563 EAL domain IH404_RS06885 PF03707 Bacterial signalling protein N terminal repeat IH404_RS06885 PF00990 Diguanylate cyclase, GGDEF domain IH404_RS06890 PF00072 Response regulator receiver domain IH404_RS06895 PF00293 NUDIX domain IH404_RS06905 PF03466 LysR substrate binding domain IH404_RS06905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS06915 PF00561 alpha/beta hydrolase fold IH404_RS06935 PF00892 EamA-like transporter family IH404_RS06950 PF00202 Aminotransferase class-III IH404_RS06965 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS06965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS06970 PF02954 Bacterial regulatory protein, Fis family IH404_RS06970 PF00072 Response regulator receiver domain IH404_RS06970 PF00158 Sigma-54 interaction domain IH404_RS06975 PF06942 GlpM protein IH404_RS06980 PF00072 Response regulator receiver domain IH404_RS06980 PF02954 Bacterial regulatory protein, Fis family IH404_RS06980 PF00158 Sigma-54 interaction domain IH404_RS06985 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS06985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS06985 PF02743 Cache domain IH404_RS06990 PF00005 ABC transporter IH404_RS06995 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS07000 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS07005 PF00497 Bacterial extracellular solute-binding proteins, family 3 IH404_RS07010 PF16901 C-terminal domain of alpha-glycerophosphate oxidase IH404_RS07010 PF01266 FAD dependent oxidoreductase IH404_RS07015 PF00455 DeoR C terminal sensor domain IH404_RS07015 PF08220 DeoR-like helix-turn-helix domain IH404_RS07020 PF00370 FGGY family of carbohydrate kinases, N-terminal domain IH404_RS07020 PF02782 FGGY family of carbohydrate kinases, C-terminal domain IH404_RS07025 PF00230 Major intrinsic protein IH404_RS07030 PF04073 Aminoacyl-tRNA editing domain IH404_RS07035 PF08402 TOBE domain IH404_RS07035 PF00005 ABC transporter IH404_RS07040 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IH404_RS07040 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IH404_RS07045 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IH404_RS07045 PF00384 Molybdopterin oxidoreductase IH404_RS07045 PF01568 Molydopterin dinucleotide binding domain IH404_RS07050 PF00462 Glutaredoxin IH404_RS07055 PF00210 Ferritin-like domain IH404_RS07060 PF04324 BFD-like [2Fe-2S] binding domain IH404_RS07065 PF00578 AhpC/TSA family IH404_RS07065 PF10417 C-terminal domain of 1-Cys peroxiredoxin IH404_RS07070 PF00929 Exonuclease IH404_RS07075 PF01979 Amidohydrolase family IH404_RS07085 PF00764 Arginosuccinate synthase IH404_RS07090 PF00072 Response regulator receiver domain IH404_RS07090 PF00196 Bacterial regulatory proteins, luxR family IH404_RS07100 PF00633 Helix-hairpin-helix motif IH404_RS07100 PF00730 HhH-GPD superfamily base excision DNA repair protein IH404_RS07100 PF10576 Iron-sulfur binding domain of endonuclease III IH404_RS07105 PF04060 Putative Fe-S cluster IH404_RS07110 PF01588 Putative tRNA binding domain IH404_RS07110 PF09334 tRNA synthetases class I (M) IH404_RS07115 PF10609 NUBPL iron-transfer P-loop NTPase IH404_RS07120 PF00037 4Fe-4S binding domain IH404_RS07120 PF11953 Domain of unknown function (DUF3470) IH404_RS07125 PF00488 MutS domain V IH404_RS07125 PF05188 MutS domain II IH404_RS07125 PF05192 MutS domain III IH404_RS07125 PF05190 MutS family domain IV IH404_RS07125 PF01624 MutS domain I IH404_RS07140 PF00717 Peptidase S24-like IH404_RS07140 PF01381 Helix-turn-helix IH404_RS07320 PF00182 Chitinase class I IH404_RS07330 PF02464 Competence-damaged protein IH404_RS07335 PF00154 recA bacterial DNA recombination protein IH404_RS07340 PF02631 RecX family IH404_RS07355 PF03942 DTW domain IH404_RS07360 PF00196 Bacterial regulatory proteins, luxR family IH404_RS07360 PF00072 Response regulator receiver domain IH404_RS07365 PF01219 Prokaryotic diacylglycerol kinase IH404_RS07370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS07370 PF03466 LysR substrate binding domain IH404_RS07375 PF00970 Oxidoreductase FAD-binding domain IH404_RS07375 PF00175 Oxidoreductase NAD-binding domain IH404_RS07380 PF18389 TrmO C-terminal domain IH404_RS07380 PF01980 tRNA-methyltransferase O IH404_RS07385 PF07308 Protein of unknown function (DUF1456) IH404_RS07395 PF13673 Acetyltransferase (GNAT) domain IH404_RS07400 PF04055 Radical SAM superfamily IH404_RS07400 PF18693 TRAM domain IH404_RS07400 PF00919 Uncharacterized protein family UPF0004 IH404_RS07405 PF02705 K+ potassium transporter IH404_RS07410 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IH404_RS07420 PF04349 Periplasmic glucan biosynthesis protein, MdoG IH404_RS07430 PF00672 HAMP domain IH404_RS07430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IH404_RS07430 PF12729 Four helix bundle sensory module for signal transduction IH404_RS07440 PF01739 CheR methyltransferase, SAM binding domain IH404_RS07450 PF01584 CheW-like domain IH404_RS07450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS07450 PF00072 Response regulator receiver domain IH404_RS07450 PF01627 Hpt domain IH404_RS07455 PF00072 Response regulator receiver domain IH404_RS07455 PF01339 CheB methylesterase IH404_RS07460 PF00563 EAL domain IH404_RS07460 PF00360 Phytochrome region IH404_RS07460 PF01590 GAF domain IH404_RS07460 PF00990 Diguanylate cyclase, GGDEF domain IH404_RS07465 PF01320 Colicin immunity protein / pyocin immunity protein IH404_RS07470 PF01320 Colicin immunity protein / pyocin immunity protein IH404_RS07475 PF01320 Colicin immunity protein / pyocin immunity protein IH404_RS07480 PF06958 S-type Pyocin IH404_RS07490 PF01336 OB-fold nucleic acid binding domain IH404_RS07490 PF00152 tRNA synthetases class II (D, K and N) IH404_RS07505 PF12146 Serine aminopeptidase, S33 IH404_RS07520 PF13488 Glycine zipper IH404_RS07520 PF00691 OmpA family IH404_RS07535 PF00311 Phosphoenolpyruvate carboxylase IH404_RS07540 PF05191 Adenylate kinase, active site lid IH404_RS07545 PF00814 Glycoprotease family IH404_RS07555 PF01904 Protein of unknown function DUF72 IH404_RS07570 PF04445 Putative SAM-dependent methyltransferase IH404_RS07580 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IH404_RS07585 PF00873 AcrB/AcrD/AcrF family IH404_RS07600 PF01553 Acyltransferase IH404_RS07605 PF00313 'Cold-shock' DNA-binding domain IH404_RS07615 PF13847 Methyltransferase domain IH404_RS07620 PF01546 Peptidase family M20/M25/M40 IH404_RS07620 PF07687 Peptidase dimerisation domain IH404_RS07625 PF07238 PilZ domain IH404_RS07625 PF03552 Cellulose synthase IH404_RS07625 PF00535 Glycosyl transferase family 2 IH404_RS07630 PF00899 ThiF family IH404_RS07635 PF02657 Fe-S metabolism associated domain IH404_RS07640 PF00266 Aminotransferase class-V IH404_RS07645 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle IH404_RS07645 PF14602 Hexapeptide repeat of succinyl-transferase IH404_RS07650 PF03960 ArsC family IH404_RS07655 PF00999 Sodium/hydrogen exchanger family IH404_RS07660 PF00155 Aminotransferase class I and II IH404_RS07665 PF01842 ACT domain IH404_RS07665 PF01909 Nucleotidyltransferase domain IH404_RS07665 PF01966 HD domain IH404_RS07665 PF08335 GlnD PII-uridylyltransferase IH404_RS07670 PF00557 Metallopeptidase family M24 IH404_RS07675 PF00318 Ribosomal protein S2 IH404_RS07680 PF00889 Elongation factor TS IH404_RS07685 PF00696 Amino acid kinase family IH404_RS07690 PF01765 Ribosome recycling factor IH404_RS07695 PF01255 Putative undecaprenyl diphosphate synthase IH404_RS07705 PF13288 DXP reductoisomerase C-terminal domain IH404_RS07705 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase IH404_RS07705 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain IH404_RS07710 PF13180 PDZ domain IH404_RS07710 PF02163 Peptidase family M50 IH404_RS07710 PF17820 PDZ domain IH404_RS07715 PF07244 Surface antigen variable number repeat IH404_RS07715 PF01103 Surface antigen IH404_RS07720 PF03938 Outer membrane protein (OmpH-like) IH404_RS07725 PF00132 Bacterial transferase hexapeptide (six repeats) IH404_RS07725 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD IH404_RS07730 PF07977 FabA-like domain IH404_RS07735 PF00132 Bacterial transferase hexapeptide (six repeats) IH404_RS07735 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 IH404_RS07740 PF02684 Lipid-A-disaccharide synthetase IH404_RS07745 PF01351 Ribonuclease HII IH404_RS07750 PF01336 OB-fold nucleic acid binding domain IH404_RS07750 PF02811 PHP domain IH404_RS07750 PF17657 Bacterial DNA polymerase III alpha subunit finger domain IH404_RS07750 PF14579 Helix-hairpin-helix motif IH404_RS07750 PF07733 Bacterial DNA polymerase III alpha NTPase domain IH404_RS07755 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit IH404_RS07760 PF11734 TilS substrate C-terminal domain IH404_RS07760 PF09179 TilS substrate binding domain IH404_RS07760 PF01171 PP-loop family IH404_RS07765 PF06418 CTP synthase N-terminus IH404_RS07765 PF00117 Glutamine amidotransferase class-I IH404_RS07770 PF00793 DAHP synthetase I family IH404_RS07775 PF00113 Enolase, C-terminal TIM barrel domain IH404_RS07775 PF03952 Enolase, N-terminal domain IH404_RS07780 PF04977 Septum formation initiator IH404_RS07785 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IH404_RS07795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS07795 PF03466 LysR substrate binding domain IH404_RS07800 PF08240 Alcohol dehydrogenase GroES-like domain IH404_RS07800 PF00107 Zinc-binding dehydrogenase IH404_RS07805 PF00756 Putative esterase IH404_RS07810 PF02542 YgbB family IH404_RS07815 PF01142 tRNA pseudouridine synthase D (TruD) IH404_RS07820 PF01975 Survival protein SurE IH404_RS07830 PF01476 LysM domain IH404_RS07830 PF01551 Peptidase family M23 IH404_RS07835 PF04542 Sigma-70 region 2 IH404_RS07835 PF04539 Sigma-70 region 3 IH404_RS07835 PF04545 Sigma-70, region 4 IH404_RS07835 PF00140 Sigma-70 factor, region 1.2 IH404_RS07840 PF00313 'Cold-shock' DNA-binding domain IH404_RS07845 PF00692 dUTPase IH404_RS07860 PF00271 Helicase conserved C-terminal domain IH404_RS07860 PF08494 DEAD/H associated IH404_RS07860 PF00270 DEAD/DEAH box helicase IH404_RS07865 PF00005 ABC transporter IH404_RS07875 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS07880 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS07885 PF00497 Bacterial extracellular solute-binding proteins, family 3 IH404_RS07890 PF04675 DNA ligase N terminus IH404_RS07890 PF04679 ATP dependent DNA ligase C terminal region IH404_RS07890 PF01068 ATP dependent DNA ligase domain IH404_RS07900 PF01804 Penicillin amidase IH404_RS07905 PF07516 SecA Wing and Scaffold domain IH404_RS07905 PF07517 SecA DEAD-like domain IH404_RS07905 PF02810 SEC-C motif IH404_RS07905 PF01043 SecA preprotein cross-linking domain IH404_RS07915 PF02810 SEC-C motif IH404_RS07925 PF00491 Arginase family IH404_RS07930 PF03466 LysR substrate binding domain IH404_RS07930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS07935 PF00158 Sigma-54 interaction domain IH404_RS07935 PF18024 Helix-turn-helix domain IH404_RS07940 PF01597 Glycine cleavage H-protein IH404_RS07945 PF02347 Glycine cleavage system P-protein IH404_RS07950 PF00464 Serine hydroxymethyltransferase IH404_RS07955 PF03313 Serine dehydratase alpha chain IH404_RS07955 PF03315 Serine dehydratase beta chain IH404_RS07960 PF01571 Aminomethyltransferase folate-binding domain IH404_RS07960 PF08669 Glycine cleavage T-protein C-terminal barrel domain IH404_RS07965 PF04055 Radical SAM superfamily IH404_RS07965 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family IH404_RS07970 PF02028 BCCT, betaine/carnitine/choline family transporter IH404_RS07975 PF03466 LysR substrate binding domain IH404_RS07975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS07980 PF03707 Bacterial signalling protein N terminal repeat IH404_RS07980 PF00990 Diguanylate cyclase, GGDEF domain IH404_RS07980 PF00563 EAL domain IH404_RS07985 PF05662 Coiled stalk of trimeric autotransporter adhesin IH404_RS07985 PF05658 Head domain of trimeric autotransporter adhesin IH404_RS07985 PF03895 YadA-like membrane anchor domain IH404_RS07985 PF13018 Extended Signal Peptide of Type V secretion system IH404_RS07995 PF08548 Peptidase M10 serralysin C terminal IH404_RS07995 PF00413 Matrixin IH404_RS07995 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) IH404_RS08000 PF02974 Protease inhibitor Inh IH404_RS08005 PF00664 ABC transporter transmembrane region IH404_RS08005 PF00005 ABC transporter IH404_RS08010 PF00529 HlyD membrane-fusion protein of T1SS IH404_RS08015 PF02321 Outer membrane efflux protein IH404_RS08020 PF03466 LysR substrate binding domain IH404_RS08020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS08035 PF04851 Type III restriction enzyme, res subunit IH404_RS08060 PF09722 Protein of unknown function (DUF2384) IH404_RS08100 PF06733 DEAD_2 IH404_RS08100 PF13307 Helicase C-terminal domain IH404_RS08105 PF02449 Beta-galactosidase IH404_RS08105 PF17992 Agarase CBM like domain IH404_RS08110 PF00144 Beta-lactamase IH404_RS08115 PF00691 OmpA family IH404_RS08115 PF04972 BON domain IH404_RS08120 PF01243 Pyridoxamine 5'-phosphate oxidase IH404_RS08120 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region IH404_RS08130 PF06965 Na+/H+ antiporter 1 IH404_RS08135 PF00291 Pyridoxal-phosphate dependent enzyme IH404_RS08160 PF03466 LysR substrate binding domain IH404_RS08160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS08175 PF05114 Protein of unknown function (DUF692) IH404_RS08185 PF00005 ABC transporter IH404_RS08190 PF00005 ABC transporter IH404_RS08190 PF12399 Branched-chain amino acid ATP-binding cassette transporter IH404_RS08195 PF02653 Branched-chain amino acid transport system / permease component IH404_RS08195 PF11862 Domain of unknown function (DUF3382) IH404_RS08200 PF02653 Branched-chain amino acid transport system / permease component IH404_RS08205 PF13458 Periplasmic binding protein IH404_RS08220 PF00563 EAL domain IH404_RS08220 PF03707 Bacterial signalling protein N terminal repeat IH404_RS08220 PF00990 Diguanylate cyclase, GGDEF domain IH404_RS08225 PF03692 Putative zinc- or iron-chelating domain IH404_RS08230 PF07690 Major Facilitator Superfamily IH404_RS08235 PF18337 RapA N-terminal Tudor like domain IH404_RS08235 PF18339 RapA N-terminal Tudor like domain 1 IH404_RS08235 PF00271 Helicase conserved C-terminal domain IH404_RS08235 PF00176 SNF2 family N-terminal domain IH404_RS08235 PF12137 RNA polymerase recycling family C-terminal IH404_RS08245 PF00266 Aminotransferase class-V IH404_RS08255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS08255 PF03466 LysR substrate binding domain IH404_RS08265 PF01384 Phosphate transporter family IH404_RS08275 PF09339 IclR helix-turn-helix domain IH404_RS08275 PF01614 Bacterial transcriptional regulator IH404_RS08280 PF07690 Major Facilitator Superfamily IH404_RS08285 PF01144 Coenzyme A transferase IH404_RS08290 PF01144 Coenzyme A transferase IH404_RS08295 PF00108 Thiolase, N-terminal domain IH404_RS08295 PF02803 Thiolase, C-terminal domain IH404_RS08300 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal IH404_RS08300 PF00775 Dioxygenase IH404_RS08305 PF00775 Dioxygenase IH404_RS08310 PF00083 Sugar (and other) transporter IH404_RS08315 PF00206 Lyase IH404_RS08315 PF10397 Adenylosuccinate lyase C-terminus IH404_RS08320 PF12146 Serine aminopeptidase, S33 IH404_RS08325 PF02627 Carboxymuconolactone decarboxylase family IH404_RS08340 PF03573 outer membrane porin, OprD family IH404_RS08345 PF02321 Outer membrane efflux protein IH404_RS08350 PF00873 AcrB/AcrD/AcrF family IH404_RS08355 PF00529 HlyD membrane-fusion protein of T1SS IH404_RS08355 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IH404_RS08360 PF08361 MAATS-type transcriptional repressor, C-terminal region IH404_RS08360 PF00440 Bacterial regulatory proteins, tetR family IH404_RS08365 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IH404_RS08370 PF07690 Major Facilitator Superfamily IH404_RS08410 PF07687 Peptidase dimerisation domain IH404_RS08410 PF01546 Peptidase family M20/M25/M40 IH404_RS08415 PF07690 Major Facilitator Superfamily IH404_RS08420 PF01425 Amidase IH404_RS08435 PF13091 PLD-like domain IH404_RS08440 PF00933 Glycosyl hydrolase family 3 N terminal domain IH404_RS08440 PF01915 Glycosyl hydrolase family 3 C-terminal domain IH404_RS08440 PF14310 Fibronectin type III-like domain IH404_RS08465 PF07715 TonB-dependent Receptor Plug Domain IH404_RS08465 PF00593 TonB dependent receptor IH404_RS08480 PF00701 Dihydrodipicolinate synthetase family IH404_RS08485 PF00596 Class II Aldolase and Adducin N-terminal domain IH404_RS08490 PF08671 Anti-repressor SinI IH404_RS08490 PF01381 Helix-turn-helix IH404_RS08500 PF00465 Iron-containing alcohol dehydrogenase IH404_RS08515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS08515 PF03466 LysR substrate binding domain IH404_RS08520 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IH404_RS08540 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IH404_RS08540 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain IH404_RS08555 PF03466 LysR substrate binding domain IH404_RS08555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS08560 PF07690 Major Facilitator Superfamily IH404_RS08570 PF00561 alpha/beta hydrolase fold IH404_RS08575 PF00849 RNA pseudouridylate synthase IH404_RS08575 PF01479 S4 domain IH404_RS08600 PF03167 Uracil DNA glycosylase superfamily IH404_RS08615 PF03212 Pertactin IH404_RS08615 PF03797 Autotransporter beta-domain IH404_RS08615 PF16168 Adhesin of bacterial autotransporter system, probable stalk IH404_RS08615 PF13018 Extended Signal Peptide of Type V secretion system IH404_RS08635 PF01970 Tripartite tricarboxylate transporter TctA family IH404_RS08650 PF03573 outer membrane porin, OprD family IH404_RS08655 PF00486 Transcriptional regulatory protein, C terminal IH404_RS08655 PF00072 Response regulator receiver domain IH404_RS08660 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS08660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS08670 PF01571 Aminomethyltransferase folate-binding domain IH404_RS08675 PF03937 Flavinator of succinate dehydrogenase IH404_RS08685 PF02910 Fumarate reductase flavoprotein C-term IH404_RS08685 PF00890 FAD binding domain IH404_RS08690 PF08281 Sigma-70, region 4 IH404_RS08690 PF04542 Sigma-70 region 2 IH404_RS08695 PF03872 Anti sigma-E protein RseA, N-terminal domain IH404_RS08695 PF03873 Anti sigma-E protein RseA, C-terminal domain IH404_RS08700 PF17188 MucB/RseB C-terminal domain IH404_RS08700 PF03888 MucB/RseB N-terminal domain IH404_RS08705 PF13180 PDZ domain IH404_RS08710 PF01435 Peptidase family M48 IH404_RS08715 PF01206 Sulfurtransferase TusA IH404_RS08720 PF00578 AhpC/TSA family IH404_RS08730 PF00701 Dihydrodipicolinate synthetase family IH404_RS08735 PF06804 NlpB/DapX lipoprotein IH404_RS08740 PF00753 Metallo-beta-lactamase superfamily IH404_RS08745 PF01259 SAICAR synthetase IH404_RS08780 PF07690 Major Facilitator Superfamily IH404_RS08790 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system IH404_RS08795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS08795 PF03466 LysR substrate binding domain IH404_RS08800 PF00083 Sugar (and other) transporter IH404_RS08800 PF07690 Major Facilitator Superfamily IH404_RS08805 PF01546 Peptidase family M20/M25/M40 IH404_RS08805 PF07687 Peptidase dimerisation domain IH404_RS08810 PF00850 Histone deacetylase domain IH404_RS08825 PF03466 LysR substrate binding domain IH404_RS08825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS08835 PF07690 Major Facilitator Superfamily IH404_RS08855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS08855 PF03466 LysR substrate binding domain IH404_RS08860 PF03466 LysR substrate binding domain IH404_RS08860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS08865 PF07690 Major Facilitator Superfamily IH404_RS08870 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IH404_RS08870 PF00205 Thiamine pyrophosphate enzyme, central domain IH404_RS08870 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IH404_RS08875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS08875 PF03466 LysR substrate binding domain IH404_RS08880 PF13460 NAD(P)H-binding IH404_RS08890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS08890 PF03466 LysR substrate binding domain IH404_RS08905 PF01494 FAD binding domain IH404_RS08910 PF07690 Major Facilitator Superfamily IH404_RS08925 PF02560 Cyanate lyase C-terminal domain IH404_RS08930 PF00484 Carbonic anhydrase IH404_RS08935 PF03466 LysR substrate binding domain IH404_RS08935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS08940 PF00497 Bacterial extracellular solute-binding proteins, family 3 IH404_RS08945 PF00120 Glutamine synthetase, catalytic domain IH404_RS08955 PF01612 3'-5' exonuclease IH404_RS08955 PF00570 HRDC domain IH404_RS08960 PF05166 YcgL domain IH404_RS08965 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IH404_RS08975 PF00881 Nitroreductase family IH404_RS08980 PF03692 Putative zinc- or iron-chelating domain IH404_RS09000 PF01844 HNH endonuclease IH404_RS09020 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain IH404_RS09020 PF00326 Prolyl oligopeptidase family IH404_RS09030 PF13230 Glutamine amidotransferases class-II IH404_RS09040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS09040 PF03466 LysR substrate binding domain IH404_RS09045 PF03746 LamB/YcsF family IH404_RS09050 PF02682 Carboxyltransferase domain, subdomain C and D IH404_RS09055 PF02626 Carboxyltransferase domain, subdomain A and B IH404_RS09065 PF02861 Clp amino terminal domain, pathogenicity island component IH404_RS09065 PF17871 AAA lid domain IH404_RS09065 PF00004 ATPase family associated with various cellular activities (AAA) IH404_RS09065 PF10431 C-terminal, D2-small domain, of ClpB protein IH404_RS09065 PF07724 AAA domain (Cdc48 subfamily) IH404_RS09075 PF00291 Pyridoxal-phosphate dependent enzyme IH404_RS09085 PF00694 Aconitase C-terminal domain IH404_RS09085 PF00330 Aconitase family (aconitate hydratase) IH404_RS09090 PF01728 FtsJ-like methyltransferase IH404_RS09090 PF18125 RlmM ferredoxin-like domain IH404_RS09095 PF01206 Sulfurtransferase TusA IH404_RS09100 PF01554 MatE IH404_RS09105 PF11890 Domain of unknown function (DUF3410) IH404_RS09105 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IH404_RS09105 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IH404_RS09115 PF00005 ABC transporter IH404_RS09115 PF00664 ABC transporter transmembrane region IH404_RS09120 PF01464 Transglycosylase SLT domain IH404_RS09120 PF14718 Soluble lytic murein transglycosylase L domain IH404_RS09125 PF16326 ABC transporter C-terminal domain IH404_RS09125 PF00005 ABC transporter IH404_RS09125 PF12848 ABC transporter IH404_RS09130 PF00582 Universal stress protein family IH404_RS09140 PF00378 Enoyl-CoA hydratase/isomerase IH404_RS09140 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IH404_RS09140 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IH404_RS09145 PF02803 Thiolase, C-terminal domain IH404_RS09145 PF00108 Thiolase, N-terminal domain IH404_RS09155 PF01396 Topoisomerase DNA binding C4 zinc finger IH404_RS09155 PF01751 Toprim domain IH404_RS09155 PF01131 DNA topoisomerase IH404_RS09155 PF08272 Topoisomerase I zinc-ribbon-like IH404_RS09170 PF03846 Cell division inhibitor SulA IH404_RS09175 PF01726 LexA DNA binding domain IH404_RS09175 PF00717 Peptidase S24-like IH404_RS09180 PF00440 Bacterial regulatory proteins, tetR family IH404_RS09185 PF00933 Glycosyl hydrolase family 3 N terminal domain IH404_RS09190 PF00271 Helicase conserved C-terminal domain IH404_RS09190 PF00176 SNF2 family N-terminal domain IH404_RS09190 PF12419 SNF2 Helicase protein IH404_RS09200 PF02559 CarD-like/TRCF domain IH404_RS09200 PF00270 DEAD/DEAH box helicase IH404_RS09200 PF00271 Helicase conserved C-terminal domain IH404_RS09200 PF03461 TRCF domain IH404_RS09200 PF17757 UvrB interaction domain IH404_RS09205 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IH404_RS09205 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IH404_RS09210 PF07992 Pyridine nucleotide-disulphide oxidoreductase IH404_RS09210 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IH404_RS09215 PF03009 Glycerophosphoryl diester phosphodiesterase family IH404_RS09225 PF12704 MacB-like periplasmic core domain IH404_RS09225 PF02687 FtsX-like permease family IH404_RS09230 PF00005 ABC transporter IH404_RS09235 PF02687 FtsX-like permease family IH404_RS09235 PF12704 MacB-like periplasmic core domain IH404_RS09240 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS09240 PF00672 HAMP domain IH404_RS09240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS09245 PF00486 Transcriptional regulatory protein, C terminal IH404_RS09245 PF00072 Response regulator receiver domain IH404_RS09255 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term IH404_RS09255 PF14489 QueF-like protein IH404_RS09270 PF04333 MlaA lipoprotein IH404_RS09275 PF00158 Sigma-54 interaction domain IH404_RS09275 PF02954 Bacterial regulatory protein, Fis family IH404_RS09275 PF00072 Response regulator receiver domain IH404_RS09285 PF00923 Transaldolase/Fructose-6-phosphate aldolase IH404_RS09290 PF01207 Dihydrouridine synthase (Dus) IH404_RS09310 PF13614 AAA domain IH404_RS09320 PF07690 Major Facilitator Superfamily IH404_RS09325 PF06039 Malate:quinone oxidoreductase (Mqo) IH404_RS09330 PF03466 LysR substrate binding domain IH404_RS09330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS09355 PF03641 Possible lysine decarboxylase IH404_RS09355 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases IH404_RS09355 PF11892 Domain of unknown function (DUF3412) IH404_RS09365 PF07055 Enoyl reductase FAD binding domain IH404_RS09365 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase IH404_RS09365 PF12241 Trans-2-enoyl-CoA reductase catalytic region IH404_RS09375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS09375 PF03466 LysR substrate binding domain IH404_RS09380 PF00202 Aminotransferase class-III IH404_RS09385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS09385 PF03466 LysR substrate binding domain IH404_RS09390 PF07690 Major Facilitator Superfamily IH404_RS09400 PF00860 Permease family IH404_RS09405 PF00561 alpha/beta hydrolase fold IH404_RS09410 PF03472 Autoinducer binding domain IH404_RS09410 PF00196 Bacterial regulatory proteins, luxR family IH404_RS09415 PF00561 alpha/beta hydrolase fold IH404_RS09420 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS09425 PF12911 N-terminal TM domain of oligopeptide transport permease C IH404_RS09425 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS09430 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IH404_RS09430 PF00005 ABC transporter IH404_RS09435 PF00005 ABC transporter IH404_RS09435 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IH404_RS09440 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IH404_RS09445 PF00106 short chain dehydrogenase IH404_RS09450 PF13419 Haloacid dehalogenase-like hydrolase IH404_RS09460 PF01979 Amidohydrolase family IH404_RS09465 PF01008 Initiation factor 2 subunit family IH404_RS09470 PF03989 DNA gyrase C-terminal domain, beta-propeller IH404_RS09470 PF00521 DNA gyrase/topoisomerase IV, subunit A IH404_RS09475 PF00266 Aminotransferase class-V IH404_RS09480 PF01817 Chorismate mutase type II IH404_RS09480 PF00800 Prephenate dehydratase IH404_RS09480 PF01842 ACT domain IH404_RS09485 PF00155 Aminotransferase class I and II IH404_RS09490 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IH404_RS09495 PF02224 Cytidylate kinase IH404_RS09500 PF00575 S1 RNA binding domain IH404_RS09510 PF00216 Bacterial DNA-binding protein IH404_RS09535 PF00535 Glycosyl transferase family 2 IH404_RS09535 PF01501 Glycosyl transferase family 8 IH404_RS09540 PF00534 Glycosyl transferases group 1 IH404_RS09540 PF13439 Glycosyltransferase Family 4 IH404_RS09545 PF13439 Glycosyltransferase Family 4 IH404_RS09545 PF00534 Glycosyl transferases group 1 IH404_RS09550 PF01370 NAD dependent epimerase/dehydratase family IH404_RS09560 PF02719 Polysaccharide biosynthesis protein IH404_RS09600 PF03814 Potassium-transporting ATPase A subunit IH404_RS09610 PF02669 K+-transporting ATPase, c chain IH404_RS09615 PF02702 Osmosensitive K+ channel His kinase sensor domain IH404_RS09615 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS09615 PF13492 GAF domain IH404_RS09615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS09615 PF13493 Domain of unknown function (DUF4118) IH404_RS09620 PF00072 Response regulator receiver domain IH404_RS09620 PF00486 Transcriptional regulatory protein, C terminal IH404_RS09625 PF01734 Patatin-like phospholipase IH404_RS09665 PF05593 RHS Repeat IH404_RS09665 PF03527 RHS protein IH404_RS09670 PF12729 Four helix bundle sensory module for signal transduction IH404_RS09670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IH404_RS09670 PF00672 HAMP domain IH404_RS09675 PF01026 TatD related DNase IH404_RS09680 PF01464 Transglycosylase SLT domain IH404_RS09680 PF00497 Bacterial extracellular solute-binding proteins, family 3 IH404_RS09705 PF13732 Domain of unknown function (DUF4162) IH404_RS09705 PF00005 ABC transporter IH404_RS09715 PF01272 Transcription elongation factor, GreA/GreB, C-term IH404_RS09715 PF03449 Transcription elongation factor, N-terminal IH404_RS09725 PF00005 ABC transporter IH404_RS09730 PF13472 GDSL-like Lipase/Acylhydrolase family IH404_RS09740 PF03734 L,D-transpeptidase catalytic domain IH404_RS09740 PF17969 L,D-transpeptidase C-terminal domain IH404_RS09745 PF11839 Alanine-zipper, major outer membrane lipoprotein IH404_RS09755 PF00793 DAHP synthetase I family IH404_RS09770 PF08546 Ketopantoate reductase PanE/ApbA C terminal IH404_RS09770 PF02558 Ketopantoate reductase PanE/ApbA IH404_RS09785 PF03466 LysR substrate binding domain IH404_RS09785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS09790 PF01272 Transcription elongation factor, GreA/GreB, C-term IH404_RS09790 PF03449 Transcription elongation factor, N-terminal IH404_RS09805 PF09285 Elongation factor P, C-terminal IH404_RS09805 PF08207 Elongation factor P (EF-P) KOW-like domain IH404_RS09805 PF01132 Elongation factor P (EF-P) OB domain IH404_RS09810 PF02566 OsmC-like protein IH404_RS09815 PF01047 MarR family IH404_RS09820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS09820 PF03466 LysR substrate binding domain IH404_RS09825 PF01925 Sulfite exporter TauE/SafE IH404_RS09830 PF03466 LysR substrate binding domain IH404_RS09830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS09840 PF06224 Winged helix DNA-binding domain IH404_RS09845 PF01474 Class-II DAHP synthetase family IH404_RS09855 PF00378 Enoyl-CoA hydratase/isomerase IH404_RS09860 PF00271 Helicase conserved C-terminal domain IH404_RS09860 PF00270 DEAD/DEAH box helicase IH404_RS09860 PF03880 DbpA RNA binding domain IH404_RS09865 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase IH404_RS09870 PF05724 Thiopurine S-methyltransferase (TPMT) IH404_RS09875 PF01435 Peptidase family M48 IH404_RS09880 PF00155 Aminotransferase class I and II IH404_RS09885 PF01641 SelR domain IH404_RS09890 PF00255 Glutathione peroxidase IH404_RS09895 PF00072 Response regulator receiver domain IH404_RS09895 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS09895 PF01627 Hpt domain IH404_RS09895 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IH404_RS09895 PF00672 HAMP domain IH404_RS09895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS09905 PF13185 GAF domain IH404_RS09910 PF00497 Bacterial extracellular solute-binding proteins, family 3 IH404_RS09910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS09910 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS09910 PF01627 Hpt domain IH404_RS09910 PF00989 PAS fold IH404_RS09910 PF00072 Response regulator receiver domain IH404_RS09915 PF00196 Bacterial regulatory proteins, luxR family IH404_RS09915 PF00072 Response regulator receiver domain IH404_RS09925 PF01966 HD domain IH404_RS09945 PF00909 Ammonium Transporter Family IH404_RS09950 PF02254 TrkA-N domain IH404_RS09950 PF02080 TrkA-C domain IH404_RS09950 PF00999 Sodium/hydrogen exchanger family IH404_RS09965 PF00849 RNA pseudouridylate synthase IH404_RS09975 PF12804 MobA-like NTP transferase domain IH404_RS09980 PF00994 Probable molybdopterin binding domain IH404_RS09985 PF00994 Probable molybdopterin binding domain IH404_RS09985 PF03454 MoeA C-terminal region (domain IV) IH404_RS09985 PF03453 MoeA N-terminal region (domain I and II) IH404_RS09990 PF01312 FlhB HrpN YscU SpaS Family IH404_RS10000 PF00005 ABC transporter IH404_RS10005 PF03379 CcmB protein IH404_RS10010 PF01578 Cytochrome C assembly protein IH404_RS10015 PF04995 Heme exporter protein D (CcmD) IH404_RS10020 PF03100 CcmE IH404_RS10025 PF01578 Cytochrome C assembly protein IH404_RS10025 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal IH404_RS10030 PF08534 Redoxin IH404_RS10035 PF03918 Cytochrome C biogenesis protein IH404_RS10055 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) IH404_RS10055 PF08548 Peptidase M10 serralysin C terminal IH404_RS10060 PF08548 Peptidase M10 serralysin C terminal IH404_RS10060 PF00413 Matrixin IH404_RS10060 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) IH404_RS10065 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) IH404_RS10065 PF08548 Peptidase M10 serralysin C terminal IH404_RS10070 PF00413 Matrixin IH404_RS10070 PF08548 Peptidase M10 serralysin C terminal IH404_RS10070 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) IH404_RS10075 PF07690 Major Facilitator Superfamily IH404_RS10085 PF00520 Ion transport protein IH404_RS10085 PF00027 Cyclic nucleotide-binding domain IH404_RS10095 PF02887 Pyruvate kinase, alpha/beta domain IH404_RS10095 PF00224 Pyruvate kinase, barrel domain IH404_RS10100 PF13660 Domain of unknown function (DUF4147) IH404_RS10100 PF05161 MOFRL family IH404_RS10105 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IH404_RS10105 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IH404_RS10110 PF01261 Xylose isomerase-like TIM barrel IH404_RS10115 PF00205 Thiamine pyrophosphate enzyme, central domain IH404_RS10115 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IH404_RS10115 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IH404_RS10130 PF00440 Bacterial regulatory proteins, tetR family IH404_RS10130 PF08362 YcdC-like protein, C-terminal region IH404_RS10135 PF05661 Protein of unknown function (DUF808) IH404_RS10140 PF04333 MlaA lipoprotein IH404_RS10160 PF04069 Substrate binding domain of ABC-type glycine betaine transport system IH404_RS10165 PF04341 Protein of unknown function, DUF485 IH404_RS10170 PF00474 Sodium:solute symporter family IH404_RS10175 PF00285 Citrate synthase, C-terminal domain IH404_RS10180 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit IH404_RS10185 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit IH404_RS10190 PF00890 FAD binding domain IH404_RS10190 PF02910 Fumarate reductase flavoprotein C-term IH404_RS10195 PF13085 2Fe-2S iron-sulfur cluster binding domain IH404_RS10200 PF16870 2-oxoglutarate dehydrogenase C-terminal IH404_RS10200 PF02779 Transketolase, pyrimidine binding domain IH404_RS10200 PF16078 2-oxoglutarate dehydrogenase N-terminus IH404_RS10200 PF00676 Dehydrogenase E1 component IH404_RS10205 PF02817 e3 binding domain IH404_RS10205 PF00364 Biotin-requiring enzyme IH404_RS10205 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IH404_RS10210 PF07992 Pyridine nucleotide-disulphide oxidoreductase IH404_RS10210 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IH404_RS10215 PF00549 CoA-ligase IH404_RS10215 PF08442 ATP-grasp domain IH404_RS10220 PF00549 CoA-ligase IH404_RS10220 PF02629 CoA binding domain IH404_RS10225 PF05525 Branched-chain amino acid transport protein IH404_RS10250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS10250 PF00183 Hsp90 protein IH404_RS10260 PF05726 Pirin C-terminal cupin domain IH404_RS10260 PF02678 Pirin IH404_RS10275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IH404_RS10275 PF00672 HAMP domain IH404_RS10275 PF12729 Four helix bundle sensory module for signal transduction IH404_RS10280 PF00109 Beta-ketoacyl synthase, N-terminal domain IH404_RS10280 PF02801 Beta-ketoacyl synthase, C-terminal domain IH404_RS10285 PF07977 FabA-like domain IH404_RS10290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS10290 PF01627 Hpt domain IH404_RS10290 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS10290 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IH404_RS10290 PF00072 Response regulator receiver domain IH404_RS10290 PF00672 HAMP domain IH404_RS10300 PF07715 TonB-dependent Receptor Plug Domain IH404_RS10300 PF00593 TonB dependent receptor IH404_RS10305 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IH404_RS10305 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus IH404_RS10320 PF00501 AMP-binding enzyme IH404_RS10325 PF03061 Thioesterase superfamily IH404_RS10335 PF12697 Alpha/beta hydrolase family IH404_RS10345 PF01594 AI-2E family transporter IH404_RS10350 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS10350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS10350 PF00672 HAMP domain IH404_RS10350 PF16527 Two-component sensor protein CpxA, periplasmic domain IH404_RS10355 PF00072 Response regulator receiver domain IH404_RS10355 PF00486 Transcriptional regulatory protein, C terminal IH404_RS10360 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family IH404_RS10365 PF16884 N-terminal domain of oxidoreductase IH404_RS10365 PF00107 Zinc-binding dehydrogenase IH404_RS10375 PF00392 Bacterial regulatory proteins, gntR family IH404_RS10375 PF00155 Aminotransferase class I and II IH404_RS10380 PF16591 Helical bimodular sensor domain IH404_RS10380 PF00672 HAMP domain IH404_RS10380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IH404_RS10385 PF00561 alpha/beta hydrolase fold IH404_RS10415 PF00072 Response regulator receiver domain IH404_RS10415 PF00196 Bacterial regulatory proteins, luxR family IH404_RS10420 PF13416 Bacterial extracellular solute-binding protein IH404_RS10435 PF00155 Aminotransferase class I and II IH404_RS10435 PF00392 Bacterial regulatory proteins, gntR family IH404_RS10440 PF03476 MOSC N-terminal beta barrel domain IH404_RS10440 PF00111 2Fe-2S iron-sulfur cluster binding domain IH404_RS10440 PF03473 MOSC domain IH404_RS10455 PF01618 MotA/TolQ/ExbB proton channel family IH404_RS10460 PF07715 TonB-dependent Receptor Plug Domain IH404_RS10460 PF00593 TonB dependent receptor IH404_RS10470 PF02472 Biopolymer transport protein ExbD/TolR IH404_RS10480 PF16655 PhoD-like phosphatase, N-terminal domain IH404_RS10480 PF09423 PhoD-like phosphatase IH404_RS10490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS10490 PF03466 LysR substrate binding domain IH404_RS10500 PF02770 Acyl-CoA dehydrogenase, middle domain IH404_RS10500 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IH404_RS10500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IH404_RS10500 PF09317 Domain of unknown function (DUF1974) IH404_RS10510 PF00043 Glutathione S-transferase, C-terminal domain IH404_RS10510 PF13417 Glutathione S-transferase, N-terminal domain IH404_RS10515 PF00005 ABC transporter IH404_RS10520 PF01061 ABC-2 type transporter IH404_RS10540 PF07690 Major Facilitator Superfamily IH404_RS10545 PF00893 Small Multidrug Resistance protein IH404_RS10550 PF01758 Sodium Bile acid symporter family IH404_RS10555 PF04381 Putative exonuclease, RdgC IH404_RS10590 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase IH404_RS10590 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IH404_RS10615 PF03572 Peptidase family S41 IH404_RS10615 PF00595 PDZ domain IH404_RS10615 PF11818 C-terminal domain of tail specific protease (DUF3340) IH404_RS10615 PF17804 Tail specific protease N-terminal domain IH404_RS10625 PF08402 TOBE domain IH404_RS10625 PF00005 ABC transporter IH404_RS10635 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS10650 PF07702 UTRA domain IH404_RS10650 PF00392 Bacterial regulatory proteins, gntR family IH404_RS10660 PF00950 ABC 3 transport family IH404_RS10665 PF00005 ABC transporter IH404_RS10695 PF12544 Lysine-2,3-aminomutase IH404_RS10695 PF04055 Radical SAM superfamily IH404_RS10700 PF00206 Lyase IH404_RS10700 PF02655 ATP-grasp domain IH404_RS10720 PF00376 MerR family regulatory protein IH404_RS10720 PF09278 MerR, DNA binding IH404_RS10730 PF00158 Sigma-54 interaction domain IH404_RS10740 PF00266 Aminotransferase class-V IH404_RS10745 PF00557 Metallopeptidase family M24 IH404_RS10745 PF01321 Creatinase/Prolidase N-terminal domain IH404_RS10750 PF01323 DSBA-like thioredoxin domain IH404_RS10765 PF00892 EamA-like transporter family IH404_RS10795 PF00905 Penicillin binding protein transpeptidase domain IH404_RS10795 PF03717 Penicillin-binding Protein dimerisation domain IH404_RS10810 PF07715 TonB-dependent Receptor Plug Domain IH404_RS10810 PF00593 TonB dependent receptor IH404_RS10815 PF03104 DNA polymerase family B, exonuclease domain IH404_RS10815 PF00136 DNA polymerase family B IH404_RS10830 PF03023 Lipid II flippase MurJ IH404_RS10870 PF02563 Polysaccharide biosynthesis/export protein IH404_RS10880 PF00483 Nucleotidyl transferase IH404_RS10880 PF01050 Mannose-6-phosphate isomerase IH404_RS10885 PF02397 Bacterial sugar transferase IH404_RS10890 PF00593 TonB dependent receptor IH404_RS10890 PF07715 TonB-dependent Receptor Plug Domain IH404_RS10890 PF07660 Secretin and TonB N terminus short domain IH404_RS10895 PF04773 FecR protein IH404_RS10895 PF16220 Domain of unknown function (DUF4880) IH404_RS10900 PF08281 Sigma-70, region 4 IH404_RS10900 PF04542 Sigma-70 region 2 IH404_RS10910 PF01965 DJ-1/PfpI family IH404_RS10915 PF01965 DJ-1/PfpI family IH404_RS10915 PF12833 Helix-turn-helix domain IH404_RS10920 PF00561 alpha/beta hydrolase fold IH404_RS10925 PF00723 Glycosyl hydrolases family 15 IH404_RS10950 PF00593 TonB dependent receptor IH404_RS10950 PF07660 Secretin and TonB N terminus short domain IH404_RS10950 PF07715 TonB-dependent Receptor Plug Domain IH404_RS10970 PF07690 Major Facilitator Superfamily IH404_RS10975 PF04717 Type VI secretion system, phage-baseplate injector IH404_RS10990 PF01764 Lipase (class 3) IH404_RS10995 PF07969 Amidohydrolase family IH404_RS11000 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin IH404_RS11005 PF00293 NUDIX domain IH404_RS11010 PF01242 6-pyruvoyl tetrahydropterin synthase IH404_RS11030 PF00486 Transcriptional regulatory protein, C terminal IH404_RS11030 PF00072 Response regulator receiver domain IH404_RS11035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS11040 PF00672 HAMP domain IH404_RS11040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IH404_RS11045 PF13726 Na+-H+ antiporter family IH404_RS11045 PF03553 Na+/H+ antiporter family IH404_RS11050 PF00672 HAMP domain IH404_RS11050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IH404_RS11050 PF17200 Single Cache domain 2 IH404_RS11055 PF01136 Peptidase family U32 IH404_RS11055 PF16325 Peptidase family U32 C-terminal domain IH404_RS11060 PF01594 AI-2E family transporter IH404_RS11080 PF08501 Shikimate dehydrogenase substrate binding domain IH404_RS11085 PF04337 Protein of unknown function, DUF480 IH404_RS11100 PF00375 Sodium:dicarboxylate symporter family IH404_RS11105 PF07690 Major Facilitator Superfamily IH404_RS11110 PF03466 LysR substrate binding domain IH404_RS11110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS11120 PF03741 Integral membrane protein TerC family IH404_RS11120 PF03471 Transporter associated domain IH404_RS11125 PF02769 AIR synthase related protein, C-terminal domain IH404_RS11125 PF00586 AIR synthase related protein, N-terminal domain IH404_RS11135 PF03773 Predicted permease IH404_RS11145 PF02798 Glutathione S-transferase, N-terminal domain IH404_RS11145 PF00043 Glutathione S-transferase, C-terminal domain IH404_RS11150 PF02567 Phenazine biosynthesis-like protein IH404_RS11155 PF00490 Delta-aminolevulinic acid dehydratase IH404_RS11165 PF05593 RHS Repeat IH404_RS11165 PF03527 RHS protein IH404_RS11170 PF07759 Protein of unknown function (DUF1615) IH404_RS11180 PF03061 Thioesterase superfamily IH404_RS11185 PF02803 Thiolase, C-terminal domain IH404_RS11185 PF00108 Thiolase, N-terminal domain IH404_RS11190 PF01144 Coenzyme A transferase IH404_RS11195 PF01144 Coenzyme A transferase IH404_RS11200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS11200 PF03466 LysR substrate binding domain IH404_RS11210 PF02146 Sir2 family IH404_RS11215 PF00571 CBS domain IH404_RS11220 PF01131 DNA topoisomerase IH404_RS11220 PF01751 Toprim domain IH404_RS11225 PF08946 Osmosensory transporter coiled coil IH404_RS11225 PF00083 Sugar (and other) transporter IH404_RS11230 PF00732 GMC oxidoreductase IH404_RS11230 PF05199 GMC oxidoreductase IH404_RS11245 PF00120 Glutamine synthetase, catalytic domain IH404_RS11260 PF07690 Major Facilitator Superfamily IH404_RS11270 PF00196 Bacterial regulatory proteins, luxR family IH404_RS11270 PF00072 Response regulator receiver domain IH404_RS11285 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase IH404_RS11285 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IH404_RS11295 PF00067 Cytochrome P450 IH404_RS11305 PF00689 Cation transporting ATPase, C-terminus IH404_RS11305 PF00690 Cation transporter/ATPase, N-terminus IH404_RS11310 PF02308 MgtC family IH404_RS11315 PF00072 Response regulator receiver domain IH404_RS11315 PF00196 Bacterial regulatory proteins, luxR family IH404_RS11320 PF00497 Bacterial extracellular solute-binding proteins, family 3 IH404_RS11320 PF00072 Response regulator receiver domain IH404_RS11320 PF00989 PAS fold IH404_RS11320 PF01627 Hpt domain IH404_RS11320 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS11320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS11330 PF00793 DAHP synthetase I family IH404_RS11335 PF00795 Carbon-nitrogen hydrolase IH404_RS11355 PF00196 Bacterial regulatory proteins, luxR family IH404_RS11355 PF00072 Response regulator receiver domain IH404_RS11360 PF02151 UvrB/uvrC motif IH404_RS11360 PF01541 GIY-YIG catalytic domain IH404_RS11360 PF08459 UvrC Helix-hairpin-helix N-terminal IH404_RS11365 PF01066 CDP-alcohol phosphatidyltransferase IH404_RS11375 PF00072 Response regulator receiver domain IH404_RS11375 PF00196 Bacterial regulatory proteins, luxR family IH404_RS11385 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain IH404_RS11385 PF02753 Pili assembly chaperone PapD, C-terminal domain IH404_RS11390 PF00577 Outer membrane usher protein IH404_RS11390 PF13953 PapC C-terminal domain IH404_RS11390 PF13954 PapC N-terminal domain IH404_RS11395 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain IH404_RS11395 PF02753 Pili assembly chaperone PapD, C-terminal domain IH404_RS11400 PF17287 POTRA domain IH404_RS11400 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB IH404_RS11400 PF08479 POTRA domain, ShlB-type IH404_RS11405 PF05860 haemagglutination activity domain IH404_RS11470 PF00005 ABC transporter IH404_RS11475 PF03379 CcmB protein IH404_RS11495 PF12833 Helix-turn-helix domain IH404_RS11495 PF12852 Cupin IH404_RS11500 PF00171 Aldehyde dehydrogenase family IH404_RS11505 PF00419 Fimbrial protein IH404_RS11510 PF02753 Pili assembly chaperone PapD, C-terminal domain IH404_RS11510 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain IH404_RS11515 PF13953 PapC C-terminal domain IH404_RS11515 PF13954 PapC N-terminal domain IH404_RS11515 PF00577 Outer membrane usher protein IH404_RS11525 PF00072 Response regulator receiver domain IH404_RS11525 PF00196 Bacterial regulatory proteins, luxR family IH404_RS11530 PF00497 Bacterial extracellular solute-binding proteins, family 3 IH404_RS11530 PF01627 Hpt domain IH404_RS11530 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS11530 PF00989 PAS fold IH404_RS11530 PF00072 Response regulator receiver domain IH404_RS11530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS11535 PF00563 EAL domain IH404_RS11535 PF00990 Diguanylate cyclase, GGDEF domain IH404_RS11535 PF03707 Bacterial signalling protein N terminal repeat IH404_RS11540 PF00072 Response regulator receiver domain IH404_RS11540 PF09456 RcsC Alpha-Beta-Loop (ABL) IH404_RS11540 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS11540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS11550 PF02321 Outer membrane efflux protein IH404_RS11555 PF00873 AcrB/AcrD/AcrF family IH404_RS11560 PF13533 Biotin-lipoyl like IH404_RS11570 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain IH404_RS11570 PF13018 Extended Signal Peptide of Type V secretion system IH404_RS11570 PF05860 haemagglutination activity domain IH404_RS11570 PF05594 Haemagluttinin repeat IH404_RS11570 PF13332 Hemagglutinin repeat IH404_RS11575 PF08479 POTRA domain, ShlB-type IH404_RS11575 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB IH404_RS11575 PF17287 POTRA domain IH404_RS11605 PF03576 Peptidase family S58 IH404_RS11615 PF00795 Carbon-nitrogen hydrolase IH404_RS11620 PF13416 Bacterial extracellular solute-binding protein IH404_RS11625 PF00561 alpha/beta hydrolase fold IH404_RS11635 PF12833 Helix-turn-helix domain IH404_RS11635 PF02311 AraC-like ligand binding domain IH404_RS11645 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IH404_RS11645 PF00529 HlyD membrane-fusion protein of T1SS IH404_RS11650 PF04632 Fusaric acid resistance protein family IH404_RS11655 PF03466 LysR substrate binding domain IH404_RS11655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS11670 PF00563 EAL domain IH404_RS11670 PF01590 GAF domain IH404_RS11670 PF00990 Diguanylate cyclase, GGDEF domain IH404_RS11670 PF00360 Phytochrome region IH404_RS11685 PF01799 [2Fe-2S] binding domain IH404_RS11685 PF00111 2Fe-2S iron-sulfur cluster binding domain IH404_RS11695 PF12833 Helix-turn-helix domain IH404_RS11695 PF06719 AraC-type transcriptional regulator N-terminus IH404_RS11700 PF00563 EAL domain IH404_RS11700 PF01590 GAF domain IH404_RS11700 PF00990 Diguanylate cyclase, GGDEF domain IH404_RS11700 PF00360 Phytochrome region IH404_RS11705 PF00196 Bacterial regulatory proteins, luxR family IH404_RS11705 PF00072 Response regulator receiver domain IH404_RS11710 PF00196 Bacterial regulatory proteins, luxR family IH404_RS11710 PF00072 Response regulator receiver domain IH404_RS11715 PF00497 Bacterial extracellular solute-binding proteins, family 3 IH404_RS11715 PF00072 Response regulator receiver domain IH404_RS11715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS11715 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS11715 PF01627 Hpt domain IH404_RS11720 PF00072 Response regulator receiver domain IH404_RS11720 PF00989 PAS fold IH404_RS11720 PF00497 Bacterial extracellular solute-binding proteins, family 3 IH404_RS11720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS11720 PF01627 Hpt domain IH404_RS11720 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS11725 PF16970 Type-1 fimbrial protein, A IH404_RS11730 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain IH404_RS11730 PF02753 Pili assembly chaperone PapD, C-terminal domain IH404_RS11735 PF00577 Outer membrane usher protein IH404_RS11735 PF13954 PapC N-terminal domain IH404_RS11735 PF13953 PapC C-terminal domain IH404_RS11740 PF00419 Fimbrial protein IH404_RS11740 PF09222 Fimbrial adhesin F17-AG, lectin domain IH404_RS11800 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IH404_RS11800 PF00034 Cytochrome c IH404_RS11805 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase IH404_RS11810 PF01799 [2Fe-2S] binding domain IH404_RS11810 PF00111 2Fe-2S iron-sulfur cluster binding domain IH404_RS11815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS11815 PF03466 LysR substrate binding domain IH404_RS11820 PF00171 Aldehyde dehydrogenase family IH404_RS11825 PF00497 Bacterial extracellular solute-binding proteins, family 3 IH404_RS11830 PF08348 YheO-like PAS domain IH404_RS11830 PF13309 HTH domain IH404_RS11835 PF01266 FAD dependent oxidoreductase IH404_RS11840 PF02423 Ornithine cyclodeaminase/mu-crystallin family IH404_RS11850 PF02653 Branched-chain amino acid transport system / permease component IH404_RS11855 PF00005 ABC transporter IH404_RS11860 PF13407 Periplasmic binding protein domain IH404_RS11870 PF12833 Helix-turn-helix domain IH404_RS11875 PF00425 chorismate binding enzyme IH404_RS11880 PF01817 Chorismate mutase type II IH404_RS11885 PF00975 Thioesterase domain IH404_RS11890 PF00501 AMP-binding enzyme IH404_RS11890 PF13193 AMP-binding enzyme C-terminal domain IH404_RS11905 PF00067 Cytochrome P450 IH404_RS11925 PF00005 ABC transporter IH404_RS11930 PF04954 Siderophore-interacting protein IH404_RS11930 PF08021 Siderophore-interacting FAD-binding domain IH404_RS11930 PF00005 ABC transporter IH404_RS11930 PF00664 ABC transporter transmembrane region IH404_RS11935 PF08242 Methyltransferase domain IH404_RS11935 PF00501 AMP-binding enzyme IH404_RS11935 PF00550 Phosphopantetheine attachment site IH404_RS11935 PF00668 Condensation domain IH404_RS11940 PF00501 AMP-binding enzyme IH404_RS11940 PF13193 AMP-binding enzyme C-terminal domain IH404_RS11940 PF00975 Thioesterase domain IH404_RS11940 PF00550 Phosphopantetheine attachment site IH404_RS11940 PF00668 Condensation domain IH404_RS11945 PF00005 ABC transporter IH404_RS11955 PF00593 TonB dependent receptor IH404_RS11955 PF07715 TonB-dependent Receptor Plug Domain IH404_RS11960 PF00593 TonB dependent receptor IH404_RS11960 PF07715 TonB-dependent Receptor Plug Domain IH404_RS11970 PF04966 Carbohydrate-selective porin, OprB family IH404_RS11975 PF01011 PQQ enzyme repeat IH404_RS11980 PF01062 Bestrophin, RFP-TM, chloride channel IH404_RS11990 PF00990 Diguanylate cyclase, GGDEF domain IH404_RS11990 PF17151 Periplasmic sensor domain IH404_RS11995 PF01022 Bacterial regulatory protein, arsR family IH404_RS12000 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IH404_RS12005 PF07715 TonB-dependent Receptor Plug Domain IH404_RS12005 PF00593 TonB dependent receptor IH404_RS12015 PF00392 Bacterial regulatory proteins, gntR family IH404_RS12020 PF00920 Dehydratase family IH404_RS12025 PF07690 Major Facilitator Superfamily IH404_RS12035 PF00171 Aldehyde dehydrogenase family IH404_RS12045 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family IH404_RS12050 PF00005 ABC transporter IH404_RS12055 PF02653 Branched-chain amino acid transport system / permease component IH404_RS12060 PF13407 Periplasmic binding protein domain IH404_RS12065 PF00005 ABC transporter IH404_RS12070 PF02653 Branched-chain amino acid transport system / permease component IH404_RS12075 PF00107 Zinc-binding dehydrogenase IH404_RS12075 PF08240 Alcohol dehydrogenase GroES-like domain IH404_RS12080 PF02782 FGGY family of carbohydrate kinases, C-terminal domain IH404_RS12080 PF00370 FGGY family of carbohydrate kinases, N-terminal domain IH404_RS12090 PF00356 Bacterial regulatory proteins, lacI family IH404_RS12090 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family IH404_RS12095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS12095 PF03466 LysR substrate binding domain IH404_RS12100 PF01425 Amidase IH404_RS12105 PF07687 Peptidase dimerisation domain IH404_RS12105 PF01546 Peptidase family M20/M25/M40 IH404_RS12110 PF00005 ABC transporter IH404_RS12115 PF00005 ABC transporter IH404_RS12115 PF12399 Branched-chain amino acid ATP-binding cassette transporter IH404_RS12125 PF02653 Branched-chain amino acid transport system / permease component IH404_RS12135 PF00392 Bacterial regulatory proteins, gntR family IH404_RS12135 PF07729 FCD domain IH404_RS12145 PF02321 Outer membrane efflux protein IH404_RS12150 PF12704 MacB-like periplasmic core domain IH404_RS12150 PF02687 FtsX-like permease family IH404_RS12150 PF00005 ABC transporter IH404_RS12155 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IH404_RS12165 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) IH404_RS12180 PF01037 Lrp/AsnC ligand binding domain IH404_RS12185 PF00005 ABC transporter IH404_RS12190 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS12195 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS12200 PF00497 Bacterial extracellular solute-binding proteins, family 3 IH404_RS12205 PF02423 Ornithine cyclodeaminase/mu-crystallin family IH404_RS12215 PF00196 Bacterial regulatory proteins, luxR family IH404_RS12215 PF00072 Response regulator receiver domain IH404_RS12225 PF13193 AMP-binding enzyme C-terminal domain IH404_RS12225 PF00501 AMP-binding enzyme IH404_RS12230 PF08946 Osmosensory transporter coiled coil IH404_RS12230 PF00083 Sugar (and other) transporter IH404_RS12245 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IH404_RS12260 PF02254 TrkA-N domain IH404_RS12260 PF00999 Sodium/hydrogen exchanger family IH404_RS12265 PF12951 Passenger-associated-transport-repeat IH404_RS12265 PF12951 Passenger-associated-transport-repeat IH404_RS12275 PF13744 Helix-turn-helix domain IH404_RS12285 PF01566 Natural resistance-associated macrophage protein IH404_RS12290 PF03466 LysR substrate binding domain IH404_RS12290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS12320 PF08240 Alcohol dehydrogenase GroES-like domain IH404_RS12320 PF00107 Zinc-binding dehydrogenase IH404_RS12330 PF03502 Nucleoside-specific channel-forming protein, Tsx IH404_RS12335 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase IH404_RS12340 PF12833 Helix-turn-helix domain IH404_RS12355 PF01547 Bacterial extracellular solute-binding protein IH404_RS12360 PF01266 FAD dependent oxidoreductase IH404_RS12365 PF04324 BFD-like [2Fe-2S] binding domain IH404_RS12365 PF07992 Pyridine nucleotide-disulphide oxidoreductase IH404_RS12375 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS12380 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS12385 PF08402 TOBE domain IH404_RS12385 PF00005 ABC transporter IH404_RS12390 PF01614 Bacterial transcriptional regulator IH404_RS12390 PF09339 IclR helix-turn-helix domain IH404_RS12395 PF01554 MatE IH404_RS12400 PF00440 Bacterial regulatory proteins, tetR family IH404_RS12410 PF07993 Male sterility protein IH404_RS12410 PF13193 AMP-binding enzyme C-terminal domain IH404_RS12410 PF00501 AMP-binding enzyme IH404_RS12410 PF00668 Condensation domain IH404_RS12410 PF00550 Phosphopantetheine attachment site IH404_RS12415 PF00501 AMP-binding enzyme IH404_RS12415 PF13193 AMP-binding enzyme C-terminal domain IH404_RS12415 PF00550 Phosphopantetheine attachment site IH404_RS12415 PF00668 Condensation domain IH404_RS12420 PF07715 TonB-dependent Receptor Plug Domain IH404_RS12420 PF00593 TonB dependent receptor IH404_RS12420 PF07660 Secretin and TonB N terminus short domain IH404_RS12425 PF00664 ABC transporter transmembrane region IH404_RS12425 PF00005 ABC transporter IH404_RS12465 PF01965 DJ-1/PfpI family IH404_RS12465 PF12833 Helix-turn-helix domain IH404_RS12475 PF02678 Pirin IH404_RS12475 PF17954 Quercetinase C-terminal cupin domain IH404_RS12480 PF01965 DJ-1/PfpI family IH404_RS12485 PF00196 Bacterial regulatory proteins, luxR family IH404_RS12490 PF00196 Bacterial regulatory proteins, luxR family IH404_RS12495 PF12833 Helix-turn-helix domain IH404_RS12495 PF02311 AraC-like ligand binding domain IH404_RS12500 PF03466 LysR substrate binding domain IH404_RS12500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS12510 PF07969 Amidohydrolase family IH404_RS12515 PF00857 Isochorismatase family IH404_RS12520 PF03466 LysR substrate binding domain IH404_RS12520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS12525 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IH404_RS12525 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IH404_RS12530 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IH404_RS12530 PF08028 Acyl-CoA dehydrogenase, C-terminal domain IH404_RS12530 PF02770 Acyl-CoA dehydrogenase, middle domain IH404_RS12545 PF05995 Cysteine dioxygenase type I IH404_RS12550 PF03466 LysR substrate binding domain IH404_RS12550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS12555 PF00596 Class II Aldolase and Adducin N-terminal domain IH404_RS12560 PF00296 Luciferase-like monooxygenase IH404_RS12570 PF04960 Glutaminase IH404_RS12580 PF16653 Saccharopine dehydrogenase C-terminal domain IH404_RS12580 PF03435 Saccharopine dehydrogenase NADP binding domain IH404_RS12585 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain IH404_RS12590 PF01717 Cobalamin-independent synthase, Catalytic domain IH404_RS12590 PF08267 Cobalamin-independent synthase, N-terminal domain IH404_RS12605 PF14834 Glutathione S-transferase, C-terminal domain IH404_RS12605 PF02798 Glutathione S-transferase, N-terminal domain IH404_RS12625 PF02633 Creatinine amidohydrolase IH404_RS12640 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS12640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS12645 PF00072 Response regulator receiver domain IH404_RS12645 PF00486 Transcriptional regulatory protein, C terminal IH404_RS12655 PF07690 Major Facilitator Superfamily IH404_RS12660 PF00392 Bacterial regulatory proteins, gntR family IH404_RS12660 PF00155 Aminotransferase class I and II IH404_RS12665 PF01380 SIS domain IH404_RS12665 PF01418 Helix-turn-helix domain, rpiR family IH404_RS12670 PF00294 pfkB family carbohydrate kinase IH404_RS12675 PF01261 Xylose isomerase-like TIM barrel IH404_RS12680 PF04962 KduI/IolB family IH404_RS12690 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IH404_RS12690 PF00205 Thiamine pyrophosphate enzyme, central domain IH404_RS12690 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IH404_RS12695 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IH404_RS12695 PF02894 Oxidoreductase family, C-terminal alpha/beta domain IH404_RS12700 PF02894 Oxidoreductase family, C-terminal alpha/beta domain IH404_RS12700 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IH404_RS12710 PF13407 Periplasmic binding protein domain IH404_RS12715 PF00005 ABC transporter IH404_RS12720 PF02653 Branched-chain amino acid transport system / permease component IH404_RS12725 PF01258 Prokaryotic dksA/traR C4-type zinc finger IH404_RS12760 PF07660 Secretin and TonB N terminus short domain IH404_RS12760 PF00593 TonB dependent receptor IH404_RS12760 PF07715 TonB-dependent Receptor Plug Domain IH404_RS12775 PF00529 HlyD membrane-fusion protein of T1SS IH404_RS12775 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IH404_RS12780 PF00873 AcrB/AcrD/AcrF family IH404_RS12785 PF02321 Outer membrane efflux protein IH404_RS12800 PF10397 Adenylosuccinate lyase C-terminus IH404_RS12800 PF00206 Lyase IH404_RS12805 PF00206 Lyase IH404_RS12805 PF10397 Adenylosuccinate lyase C-terminus IH404_RS12840 PF02894 Oxidoreductase family, C-terminal alpha/beta domain IH404_RS12840 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IH404_RS12845 PF00445 Ribonuclease T2 family IH404_RS12850 PF01726 LexA DNA binding domain IH404_RS12850 PF00717 Peptidase S24-like IH404_RS12855 PF03846 Cell division inhibitor SulA IH404_RS12865 PF07733 Bacterial DNA polymerase III alpha NTPase domain IH404_RS12865 PF17657 Bacterial DNA polymerase III alpha subunit finger domain IH404_RS12865 PF14579 Helix-hairpin-helix motif IH404_RS12865 PF02811 PHP domain IH404_RS12865 PF01336 OB-fold nucleic acid binding domain IH404_RS12870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS12870 PF13426 PAS domain IH404_RS12870 PF00072 Response regulator receiver domain IH404_RS12875 PF17755 UvrA DNA-binding domain IH404_RS12880 PF00456 Transketolase, thiamine diphosphate binding domain IH404_RS12880 PF02780 Transketolase, C-terminal domain IH404_RS12880 PF02779 Transketolase, pyrimidine binding domain IH404_RS12890 PF07063 Domain of unknown function (DUF1338) IH404_RS12905 PF00106 short chain dehydrogenase IH404_RS12910 PF00743 Flavin-binding monooxygenase-like IH404_RS12915 PF00561 alpha/beta hydrolase fold IH404_RS12920 PF00487 Fatty acid desaturase IH404_RS12935 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) IH404_RS12940 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IH404_RS12940 PF02770 Acyl-CoA dehydrogenase, middle domain IH404_RS12940 PF09317 Domain of unknown function (DUF1974) IH404_RS12940 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IH404_RS12955 PF00108 Thiolase, N-terminal domain IH404_RS12955 PF02803 Thiolase, C-terminal domain IH404_RS12960 PF13193 AMP-binding enzyme C-terminal domain IH404_RS12960 PF00501 AMP-binding enzyme IH404_RS12965 PF08548 Peptidase M10 serralysin C terminal IH404_RS12965 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) IH404_RS12970 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IH404_RS12970 PF02894 Oxidoreductase family, C-terminal alpha/beta domain IH404_RS12995 PF10282 Lactonase, 7-bladed beta-propeller IH404_RS13015 PF00149 Calcineurin-like phosphoesterase IH404_RS13015 PF12320 Type 5 capsule protein repressor C-terminal domain IH404_RS13040 PF01882 Protein of unknown function DUF58 IH404_RS13045 PF17863 AAA lid domain IH404_RS13045 PF07726 ATPase family associated with various cellular activities (AAA) IH404_RS13055 PF05088 Bacterial NAD-glutamate dehydrogenase IH404_RS13060 PF00392 Bacterial regulatory proteins, gntR family IH404_RS13060 PF07729 FCD domain IH404_RS13065 PF07729 FCD domain IH404_RS13065 PF00392 Bacterial regulatory proteins, gntR family IH404_RS13070 PF00375 Sodium:dicarboxylate symporter family IH404_RS13075 PF03352 Methyladenine glycosylase IH404_RS13085 PF00392 Bacterial regulatory proteins, gntR family IH404_RS13085 PF00155 Aminotransferase class I and II IH404_RS13100 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IH404_RS13100 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IH404_RS13120 PF06434 Aconitate hydratase 2 N-terminus IH404_RS13120 PF11791 Aconitate B N-terminal domain IH404_RS13120 PF00330 Aconitase family (aconitate hydratase) IH404_RS13130 PF00582 Universal stress protein family IH404_RS13135 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) IH404_RS13145 PF00072 Response regulator receiver domain IH404_RS13145 PF00486 Transcriptional regulatory protein, C terminal IH404_RS13150 PF00672 HAMP domain IH404_RS13150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS13150 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS13160 PF00144 Beta-lactamase IH404_RS13165 PF03466 LysR substrate binding domain IH404_RS13165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS13175 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IH404_RS13175 PF02770 Acyl-CoA dehydrogenase, middle domain IH404_RS13175 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IH404_RS13180 PF03972 MmgE/PrpD family IH404_RS13185 PF02515 CoA-transferase family III IH404_RS13190 PF03328 HpcH/HpaI aldolase/citrate lyase family IH404_RS13195 PF03480 Bacterial extracellular solute-binding protein, family 7 IH404_RS13200 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component IH404_RS13205 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IH404_RS13210 PF00144 Beta-lactamase IH404_RS13215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS13215 PF03466 LysR substrate binding domain IH404_RS13220 PF01738 Dienelactone hydrolase family IH404_RS13230 PF00892 EamA-like transporter family IH404_RS13235 PF00155 Aminotransferase class I and II IH404_RS13235 PF00392 Bacterial regulatory proteins, gntR family IH404_RS13250 PF01425 Amidase IH404_RS13270 PF13407 Periplasmic binding protein domain IH404_RS13280 PF00106 short chain dehydrogenase IH404_RS13290 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IH404_RS13290 PF02894 Oxidoreductase family, C-terminal alpha/beta domain IH404_RS13295 PF07690 Major Facilitator Superfamily IH404_RS13300 PF12833 Helix-turn-helix domain IH404_RS13300 PF02311 AraC-like ligand binding domain IH404_RS13305 PF07690 Major Facilitator Superfamily IH404_RS13310 PF06719 AraC-type transcriptional regulator N-terminus IH404_RS13310 PF12833 Helix-turn-helix domain IH404_RS13320 PF00083 Sugar (and other) transporter IH404_RS13320 PF08946 Osmosensory transporter coiled coil IH404_RS13325 PF03352 Methyladenine glycosylase IH404_RS13325 PF00958 GMP synthase C terminal domain IH404_RS13325 PF13302 Acetyltransferase (GNAT) domain IH404_RS13325 PF13673 Acetyltransferase (GNAT) domain IH404_RS13325 PF00117 Glutamine amidotransferase class-I IH404_RS13330 PF07690 Major Facilitator Superfamily IH404_RS13335 PF08386 TAP-like protein IH404_RS13335 PF00561 alpha/beta hydrolase fold IH404_RS13345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS13345 PF03466 LysR substrate binding domain IH404_RS13350 PF07995 Glucose / Sorbosone dehydrogenase IH404_RS13375 PF00857 Isochorismatase family IH404_RS13380 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding IH404_RS13380 PF18381 YcaO cyclodehydratase C-terminal domain IH404_RS13385 PF01053 Cys/Met metabolism PLP-dependent enzyme IH404_RS13390 PF00291 Pyridoxal-phosphate dependent enzyme IH404_RS13390 PF00571 CBS domain IH404_RS13410 PF07690 Major Facilitator Superfamily IH404_RS13415 PF03466 LysR substrate binding domain IH404_RS13415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS13450 PF00989 PAS fold IH404_RS13450 PF00672 HAMP domain IH404_RS13450 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS13450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS13450 PF18698 Histidine kinase sensor domain IH404_RS13460 PF04542 Sigma-70 region 2 IH404_RS13460 PF08281 Sigma-70, region 4 IH404_RS13465 PF04773 FecR protein IH404_RS13465 PF16220 Domain of unknown function (DUF4880) IH404_RS13470 PF00593 TonB dependent receptor IH404_RS13470 PF07715 TonB-dependent Receptor Plug Domain IH404_RS13470 PF07660 Secretin and TonB N terminus short domain IH404_RS13475 PF03466 LysR substrate binding domain IH404_RS13475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS13480 PF02801 Beta-ketoacyl synthase, C-terminal domain IH404_RS13480 PF14765 Polyketide synthase dehydratase IH404_RS13480 PF08659 KR domain IH404_RS13480 PF00550 Phosphopantetheine attachment site IH404_RS13480 PF00109 Beta-ketoacyl synthase, N-terminal domain IH404_RS13480 PF16197 Ketoacyl-synthetase C-terminal extension IH404_RS13480 PF08240 Alcohol dehydrogenase GroES-like domain IH404_RS13480 PF00698 Acyl transferase domain IH404_RS13485 PF00672 HAMP domain IH404_RS13485 PF17200 Single Cache domain 2 IH404_RS13485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IH404_RS13490 PF00593 TonB dependent receptor IH404_RS13490 PF07715 TonB-dependent Receptor Plug Domain IH404_RS13525 PF00128 Alpha amylase, catalytic domain IH404_RS13525 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IH404_RS13535 PF00128 Alpha amylase, catalytic domain IH404_RS13540 PF02446 4-alpha-glucanotransferase IH404_RS13545 PF00128 Alpha amylase, catalytic domain IH404_RS13545 PF11941 Domain of unknown function (DUF3459) IH404_RS13545 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IH404_RS13550 PF08323 Starch synthase catalytic domain IH404_RS13550 PF00534 Glycosyl transferases group 1 IH404_RS13555 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IH404_RS13555 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IH404_RS13555 PF01842 ACT domain IH404_RS13560 PF00561 alpha/beta hydrolase fold IH404_RS13565 PF09335 SNARE associated Golgi protein IH404_RS13600 PF00005 ABC transporter IH404_RS13610 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS13630 PF01804 Penicillin amidase IH404_RS13640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS13640 PF03466 LysR substrate binding domain IH404_RS13645 PF00144 Beta-lactamase IH404_RS13650 PF07859 alpha/beta hydrolase fold IH404_RS13680 PF01965 DJ-1/PfpI family IH404_RS13680 PF12833 Helix-turn-helix domain IH404_RS13685 PF01266 FAD dependent oxidoreductase IH404_RS13690 PF00171 Aldehyde dehydrogenase family IH404_RS13695 PF00701 Dihydrodipicolinate synthetase family IH404_RS13700 PF05544 Proline racemase IH404_RS13705 PF13520 Amino acid permease IH404_RS13725 PF00011 Hsp20/alpha crystallin family IH404_RS13730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS13730 PF03466 LysR substrate binding domain IH404_RS13735 PF00994 Probable molybdopterin binding domain IH404_RS13740 PF03454 MoeA C-terminal region (domain IV) IH404_RS13740 PF03453 MoeA N-terminal region (domain I and II) IH404_RS13740 PF00994 Probable molybdopterin binding domain IH404_RS13745 PF02391 MoaE protein IH404_RS13755 PF01967 MoaC family IH404_RS13760 PF06463 Molybdenum Cofactor Synthesis C IH404_RS13760 PF04055 Radical SAM superfamily IH404_RS13765 PF01568 Molydopterin dinucleotide binding domain IH404_RS13765 PF00384 Molybdopterin oxidoreductase IH404_RS13770 PF01654 Cytochrome bd terminal oxidase subunit I IH404_RS13775 PF02322 Cytochrome bd terminal oxidase subunit II IH404_RS13785 PF00857 Isochorismatase family IH404_RS13790 PF00857 Isochorismatase family IH404_RS13805 PF12849 PBP superfamily domain IH404_RS13810 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS13815 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS13820 PF00005 ABC transporter IH404_RS13835 PF17287 POTRA domain IH404_RS13835 PF08479 POTRA domain, ShlB-type IH404_RS13835 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB IH404_RS13860 PF00376 MerR family regulatory protein IH404_RS13860 PF09278 MerR, DNA binding IH404_RS13865 PF00881 Nitroreductase family IH404_RS13870 PF08548 Peptidase M10 serralysin C terminal IH404_RS13870 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) IH404_RS13870 PF00413 Matrixin IH404_RS13930 PF00145 C-5 cytosine-specific DNA methylase IH404_RS13935 PF00677 Lumazine binding domain IH404_RS13970 PF00444 Ribosomal protein L36 IH404_RS14000 PF01381 Helix-turn-helix IH404_RS14000 PF00717 Peptidase S24-like IH404_RS14240 PF02498 BRO family, N-terminal domain IH404_RS14240 PF10548 P22AR C-terminal domain IH404_RS14285 PF02586 SOS response associated peptidase (SRAP) IH404_RS14295 PF00717 Peptidase S24-like IH404_RS14300 PF11799 impB/mucB/samB family C-terminal domain IH404_RS14300 PF13438 Domain of unknown function (DUF4113) IH404_RS14300 PF00817 impB/mucB/samB family IH404_RS14340 PF00689 Cation transporting ATPase, C-terminus IH404_RS14340 PF00690 Cation transporter/ATPase, N-terminus IH404_RS14350 PF01810 LysE type translocator IH404_RS14360 PF02040 Arsenical pump membrane protein IH404_RS14365 PF01022 Bacterial regulatory protein, arsR family IH404_RS14375 PF03591 AzlC protein IH404_RS14390 PF06912 Protein of unknown function (DUF1275) IH404_RS14395 PF12848 ABC transporter IH404_RS14395 PF00005 ABC transporter IH404_RS14405 PF00005 ABC transporter IH404_RS14405 PF03459 TOBE domain IH404_RS14410 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS14420 PF03060 Nitronate monooxygenase IH404_RS14425 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain IH404_RS14425 PF12833 Helix-turn-helix domain IH404_RS14425 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IH404_RS14425 PF02805 Metal binding domain of Ada IH404_RS14430 PF13532 2OG-Fe(II) oxygenase superfamily IH404_RS14465 PF00419 Fimbrial protein IH404_RS14470 PF00419 Fimbrial protein IH404_RS14475 PF00419 Fimbrial protein IH404_RS14485 PF02753 Pili assembly chaperone PapD, C-terminal domain IH404_RS14485 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain IH404_RS14490 PF13954 PapC N-terminal domain IH404_RS14490 PF00577 Outer membrane usher protein IH404_RS14490 PF13953 PapC C-terminal domain IH404_RS14500 PF00419 Fimbrial protein IH404_RS14510 PF00483 Nucleotidyl transferase IH404_RS14515 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IH404_RS14515 PF07992 Pyridine nucleotide-disulphide oxidoreductase IH404_RS14530 PF10417 C-terminal domain of 1-Cys peroxiredoxin IH404_RS14530 PF00578 AhpC/TSA family IH404_RS14535 PF07992 Pyridine nucleotide-disulphide oxidoreductase IH404_RS14535 PF13192 Thioredoxin domain IH404_RS14540 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IH404_RS14555 PF00563 EAL domain IH404_RS14555 PF12792 CSS motif domain associated with EAL IH404_RS14560 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IH404_RS14570 PF00892 EamA-like transporter family IH404_RS14575 PF00248 Aldo/keto reductase family IH404_RS14580 PF03466 LysR substrate binding domain IH404_RS14580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS14595 PF07690 Major Facilitator Superfamily IH404_RS14600 PF05651 Putative sugar diacid recognition IH404_RS14600 PF13556 PucR C-terminal helix-turn-helix domain IH404_RS14600 PF17853 GGDEF-like domain IH404_RS14605 PF02595 Glycerate kinase family IH404_RS14610 PF00850 Histone deacetylase domain IH404_RS14625 PF00072 Response regulator receiver domain IH404_RS14625 PF00196 Bacterial regulatory proteins, luxR family IH404_RS14630 PF00583 Acetyltransferase (GNAT) family IH404_RS14635 PF01177 Asp/Glu/Hydantoin racemase IH404_RS14640 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) IH404_RS14640 PF08548 Peptidase M10 serralysin C terminal IH404_RS14650 PF11769 Protein of unknown function (DUF3313) IH404_RS14660 PF00072 Response regulator receiver domain IH404_RS14660 PF13188 PAS domain IH404_RS14660 PF08448 PAS fold IH404_RS14660 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS14660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS14670 PF00072 Response regulator receiver domain IH404_RS14670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS14670 PF01627 Hpt domain IH404_RS14670 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS14675 PF01739 CheR methyltransferase, SAM binding domain IH404_RS14675 PF03705 CheR methyltransferase, all-alpha domain IH404_RS14680 PF01339 CheB methylesterase IH404_RS14685 PF00072 Response regulator receiver domain IH404_RS14685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS14685 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IH404_RS14685 PF00672 HAMP domain IH404_RS14685 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS14685 PF01627 Hpt domain IH404_RS14700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS14700 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS14700 PF08448 PAS fold IH404_RS14700 PF13188 PAS domain IH404_RS14700 PF00072 Response regulator receiver domain IH404_RS14705 PF06745 KaiC IH404_RS14715 PF01062 Bestrophin, RFP-TM, chloride channel IH404_RS14720 PF13193 AMP-binding enzyme C-terminal domain IH404_RS14720 PF00501 AMP-binding enzyme IH404_RS14725 PF00106 short chain dehydrogenase IH404_RS14730 PF02803 Thiolase, C-terminal domain IH404_RS14730 PF00108 Thiolase, N-terminal domain IH404_RS14735 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IH404_RS14735 PF02770 Acyl-CoA dehydrogenase, middle domain IH404_RS14735 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IH404_RS14740 PF00378 Enoyl-CoA hydratase/isomerase IH404_RS14745 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IH404_RS14745 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IH404_RS14745 PF02770 Acyl-CoA dehydrogenase, middle domain IH404_RS14750 PF00378 Enoyl-CoA hydratase/isomerase IH404_RS14770 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IH404_RS14770 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IH404_RS14770 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IH404_RS14775 PF00893 Small Multidrug Resistance protein IH404_RS14780 PF00892 EamA-like transporter family IH404_RS14785 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase IH404_RS14790 PF01522 Polysaccharide deacetylase IH404_RS14795 PF02911 Formyl transferase, C-terminal domain IH404_RS14795 PF01370 NAD dependent epimerase/dehydratase family IH404_RS14795 PF00551 Formyl transferase IH404_RS14800 PF00535 Glycosyl transferase family 2 IH404_RS14810 PF00589 Phage integrase family IH404_RS14810 PF02899 Phage integrase, N-terminal SAM-like domain IH404_RS14815 PF07690 Major Facilitator Superfamily IH404_RS14820 PF02203 Tar ligand binding domain homologue IH404_RS14820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IH404_RS14820 PF00672 HAMP domain IH404_RS14880 PF07693 KAP family P-loop domain IH404_RS14885 PF12462 DNA helicase IV / RNA helicase N terminal IH404_RS14885 PF00580 UvrD/REP helicase N-terminal domain IH404_RS14885 PF13361 UvrD-like helicase C-terminal domain IH404_RS14890 PF12462 DNA helicase IV / RNA helicase N terminal IH404_RS14890 PF13361 UvrD-like helicase C-terminal domain IH404_RS14890 PF00580 UvrD/REP helicase N-terminal domain IH404_RS14895 PF00293 NUDIX domain IH404_RS14900 PF03050 Transposase IS66 family IH404_RS14900 PF13817 IS66 C-terminal element IH404_RS14900 PF13007 Transposase C of IS166 homeodomain IH404_RS14900 PF13005 zinc-finger binding domain of transposase IS66 IH404_RS14910 PF01527 Transposase IH404_RS14960 PF00271 Helicase conserved C-terminal domain IH404_RS14960 PF00270 DEAD/DEAH box helicase IH404_RS14960 PF09369 Domain of unknown function (DUF1998) IH404_RS15025 PF01026 TatD related DNase IH404_RS15070 PF00593 TonB dependent receptor IH404_RS15070 PF07715 TonB-dependent Receptor Plug Domain IH404_RS15075 PF01497 Periplasmic binding protein IH404_RS15080 PF00005 ABC transporter IH404_RS15085 PF01032 FecCD transport family IH404_RS15090 PF01032 FecCD transport family IH404_RS15095 PF00005 ABC transporter IH404_RS15100 PF04954 Siderophore-interacting protein IH404_RS15100 PF00005 ABC transporter IH404_RS15100 PF00664 ABC transporter transmembrane region IH404_RS15100 PF08021 Siderophore-interacting FAD-binding domain IH404_RS15110 PF00501 AMP-binding enzyme IH404_RS15110 PF00550 Phosphopantetheine attachment site IH404_RS15110 PF13193 AMP-binding enzyme C-terminal domain IH404_RS15110 PF00668 Condensation domain IH404_RS15110 PF00975 Thioesterase domain IH404_RS15115 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) IH404_RS15120 PF00550 Phosphopantetheine attachment site IH404_RS15120 PF00668 Condensation domain IH404_RS15120 PF13193 AMP-binding enzyme C-terminal domain IH404_RS15120 PF00501 AMP-binding enzyme IH404_RS15125 PF00425 chorismate binding enzyme IH404_RS15130 PF13193 AMP-binding enzyme C-terminal domain IH404_RS15130 PF00501 AMP-binding enzyme IH404_RS15140 PF01817 Chorismate mutase type II IH404_RS15145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS15145 PF03466 LysR substrate binding domain IH404_RS15150 PF00561 alpha/beta hydrolase fold IH404_RS15155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS15155 PF03466 LysR substrate binding domain IH404_RS15160 PF10996 Beta-Casp domain IH404_RS15160 PF00753 Metallo-beta-lactamase superfamily IH404_RS15160 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain IH404_RS15165 PF05199 GMC oxidoreductase IH404_RS15165 PF00732 GMC oxidoreductase IH404_RS15170 PF07992 Pyridine nucleotide-disulphide oxidoreductase IH404_RS15170 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding IH404_RS15170 PF10518 TAT (twin-arginine translocation) pathway signal sequence IH404_RS15185 PF00398 Ribosomal RNA adenine dimethylase IH404_RS15215 PF00355 Rieske [2Fe-2S] domain IH404_RS15225 PF02223 Thymidylate kinase IH404_RS15230 PF00551 Formyl transferase IH404_RS15230 PF02911 Formyl transferase, C-terminal domain IH404_RS15230 PF00378 Enoyl-CoA hydratase/isomerase IH404_RS15235 PF03466 LysR substrate binding domain IH404_RS15235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS15245 PF00296 Luciferase-like monooxygenase IH404_RS15255 PF00672 HAMP domain IH404_RS15255 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS15255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS15260 PF00072 Response regulator receiver domain IH404_RS15260 PF00486 Transcriptional regulatory protein, C terminal IH404_RS15280 PF01042 Endoribonuclease L-PSP IH404_RS15285 PF12392 Collagenase IH404_RS15285 PF01136 Peptidase family U32 IH404_RS15295 PF01037 Lrp/AsnC ligand binding domain IH404_RS15300 PF00155 Aminotransferase class I and II IH404_RS15310 PF00999 Sodium/hydrogen exchanger family IH404_RS15325 PF14403 Circularly permuted ATP-grasp type 2 IH404_RS15330 PF14403 Circularly permuted ATP-grasp type 2 IH404_RS15330 PF04168 A predicted alpha-helical domain with a conserved ER motif. IH404_RS15335 PF00270 DEAD/DEAH box helicase IH404_RS15335 PF00271 Helicase conserved C-terminal domain IH404_RS15340 PF18081 Fanconi anemia-associated nuclease SAP domain IH404_RS15340 PF08774 VRR-NUC domain IH404_RS15350 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) IH404_RS15355 PF03797 Autotransporter beta-domain IH404_RS15355 PF12951 Passenger-associated-transport-repeat IH404_RS15355 PF00082 Subtilase family IH404_RS15360 PF03797 Autotransporter beta-domain IH404_RS15360 PF12951 Passenger-associated-transport-repeat IH404_RS15360 PF00082 Subtilase family IH404_RS15365 PF02321 Outer membrane efflux protein IH404_RS15370 PF00529 HlyD membrane-fusion protein of T1SS IH404_RS15375 PF00664 ABC transporter transmembrane region IH404_RS15375 PF00005 ABC transporter IH404_RS15380 PF02974 Protease inhibitor Inh IH404_RS15385 PF00413 Matrixin IH404_RS15385 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) IH404_RS15385 PF08548 Peptidase M10 serralysin C terminal IH404_RS15390 PF03576 Peptidase family S58 IH404_RS15395 PF00324 Amino acid permease IH404_RS15400 PF00196 Bacterial regulatory proteins, luxR family IH404_RS15400 PF00072 Response regulator receiver domain IH404_RS15415 PF00580 UvrD/REP helicase N-terminal domain IH404_RS15415 PF13361 UvrD-like helicase C-terminal domain IH404_RS15415 PF12462 DNA helicase IV / RNA helicase N terminal IH404_RS15420 PF02678 Pirin IH404_RS15420 PF17954 Quercetinase C-terminal cupin domain IH404_RS15425 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IH404_RS15425 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IH404_RS15425 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IH404_RS15425 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IH404_RS15430 PF00155 Aminotransferase class I and II IH404_RS15430 PF00392 Bacterial regulatory proteins, gntR family IH404_RS15440 PF00698 Acyl transferase domain IH404_RS15440 PF08240 Alcohol dehydrogenase GroES-like domain IH404_RS15440 PF00107 Zinc-binding dehydrogenase IH404_RS15440 PF16197 Ketoacyl-synthetase C-terminal extension IH404_RS15440 PF02801 Beta-ketoacyl synthase, C-terminal domain IH404_RS15440 PF08659 KR domain IH404_RS15440 PF00109 Beta-ketoacyl synthase, N-terminal domain IH404_RS15440 PF14765 Polyketide synthase dehydratase IH404_RS15440 PF00550 Phosphopantetheine attachment site IH404_RS15475 PF00202 Aminotransferase class-III IH404_RS15485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IH404_RS15505 PF13533 Biotin-lipoyl like IH404_RS15510 PF07690 Major Facilitator Superfamily IH404_RS15515 PF02321 Outer membrane efflux protein IH404_RS15520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS15520 PF03466 LysR substrate binding domain IH404_RS15530 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IH404_RS15530 PF00529 HlyD membrane-fusion protein of T1SS IH404_RS15535 PF00873 AcrB/AcrD/AcrF family IH404_RS15540 PF02321 Outer membrane efflux protein IH404_RS15550 PF12833 Helix-turn-helix domain IH404_RS15555 PF03239 Iron permease FTR1 family IH404_RS15560 PF13473 Cupredoxin-like domain IH404_RS15560 PF09375 Imelysin IH404_RS15565 PF04261 Dyp-type peroxidase family IH404_RS15570 PF09375 Imelysin IH404_RS15570 PF13473 Cupredoxin-like domain IH404_RS15575 PF13091 PLD-like domain IH404_RS15590 PF07995 Glucose / Sorbosone dehydrogenase IH404_RS15600 PF02735 Ku70/Ku80 beta-barrel domain IH404_RS15605 PF13298 DNA polymerase Ligase (LigD) IH404_RS15605 PF01068 ATP dependent DNA ligase domain IH404_RS15605 PF04679 ATP dependent DNA ligase C terminal region IH404_RS15630 PF07690 Major Facilitator Superfamily IH404_RS15635 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) IH404_RS15640 PF12848 ABC transporter IH404_RS15640 PF00005 ABC transporter IH404_RS15645 PF07690 Major Facilitator Superfamily IH404_RS15655 PF02525 Flavodoxin-like fold IH404_RS15660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS15660 PF03466 LysR substrate binding domain IH404_RS15675 PF02673 Bacitracin resistance protein BacA IH404_RS15680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IH404_RS15680 PF00672 HAMP domain IH404_RS15680 PF17200 Single Cache domain 2 IH404_RS15700 PF00155 Aminotransferase class I and II IH404_RS15705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS15705 PF03459 TOBE domain IH404_RS15710 PF00268 Ribonucleotide reductase, small chain IH404_RS15725 PF00456 Transketolase, thiamine diphosphate binding domain IH404_RS15725 PF17831 Pyruvate dehydrogenase E1 component middle domain IH404_RS15735 PF01066 CDP-alcohol phosphatidyltransferase IH404_RS15740 PF01925 Sulfite exporter TauE/SafE IH404_RS15745 PF00293 NUDIX domain IH404_RS15745 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain IH404_RS15745 PF09297 NADH pyrophosphatase zinc ribbon domain IH404_RS15750 PF00378 Enoyl-CoA hydratase/isomerase IH404_RS15755 PF03695 Uncharacterised protein family (UPF0149) IH404_RS15755 PF02810 SEC-C motif IH404_RS15760 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IH404_RS15770 PF02525 Flavodoxin-like fold IH404_RS15790 PF00072 Response regulator receiver domain IH404_RS15790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS15790 PF13426 PAS domain IH404_RS15800 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IH404_RS15800 PF02806 Alpha amylase, C-terminal all-beta domain IH404_RS15800 PF00128 Alpha amylase, catalytic domain IH404_RS15805 PF16657 Maltogenic Amylase, C-terminal domain IH404_RS15805 PF00128 Alpha amylase, catalytic domain IH404_RS15810 PF00128 Alpha amylase, catalytic domain IH404_RS15810 PF11896 Domain of unknown function (DUF3416) IH404_RS15825 PF02308 MgtC family IH404_RS15835 PF12801 4Fe-4S binding domain IH404_RS15835 PF13746 4Fe-4S dicluster domain IH404_RS15835 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase IH404_RS15840 PF00155 Aminotransferase class I and II IH404_RS15840 PF00392 Bacterial regulatory proteins, gntR family IH404_RS15850 PF03707 Bacterial signalling protein N terminal repeat IH404_RS15850 PF00563 EAL domain IH404_RS15850 PF00990 Diguanylate cyclase, GGDEF domain IH404_RS15855 PF02321 Outer membrane efflux protein IH404_RS15860 PF00873 AcrB/AcrD/AcrF family IH404_RS15865 PF00873 AcrB/AcrD/AcrF family IH404_RS15870 PF13533 Biotin-lipoyl like IH404_RS15875 PF08534 Redoxin IH404_RS15900 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS15905 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS15910 PF17912 MalK OB fold domain IH404_RS15910 PF00005 ABC transporter IH404_RS15915 PF01232 Mannitol dehydrogenase Rossmann domain IH404_RS15915 PF08125 Mannitol dehydrogenase C-terminal domain IH404_RS15920 PF02782 FGGY family of carbohydrate kinases, C-terminal domain IH404_RS15920 PF00370 FGGY family of carbohydrate kinases, N-terminal domain IH404_RS15925 PF00294 pfkB family carbohydrate kinase IH404_RS15935 PF00585 C-terminal regulatory domain of Threonine dehydratase IH404_RS15935 PF00291 Pyridoxal-phosphate dependent enzyme IH404_RS15945 PF00557 Metallopeptidase family M24 IH404_RS15960 PF00296 Luciferase-like monooxygenase IH404_RS15965 PF08028 Acyl-CoA dehydrogenase, C-terminal domain IH404_RS15965 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IH404_RS15970 PF01925 Sulfite exporter TauE/SafE IH404_RS15980 PF00672 HAMP domain IH404_RS15980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS15980 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS15985 PF00072 Response regulator receiver domain IH404_RS15985 PF00486 Transcriptional regulatory protein, C terminal IH404_RS15990 PF00529 HlyD membrane-fusion protein of T1SS IH404_RS15990 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IH404_RS15995 PF00873 AcrB/AcrD/AcrF family IH404_RS16015 PF00356 Bacterial regulatory proteins, lacI family IH404_RS16025 PF00294 pfkB family carbohydrate kinase IH404_RS16030 PF07690 Major Facilitator Superfamily IH404_RS16035 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IH404_RS16035 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IH404_RS16040 PF00860 Permease family IH404_RS16050 PF00795 Carbon-nitrogen hydrolase IH404_RS16055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS16055 PF03466 LysR substrate binding domain IH404_RS16070 PF02615 Malate/L-lactate dehydrogenase IH404_RS16120 PF00072 Response regulator receiver domain IH404_RS16120 PF00158 Sigma-54 interaction domain IH404_RS16120 PF02954 Bacterial regulatory protein, Fis family IH404_RS16135 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain IH404_RS16135 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain IH404_RS16140 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IH404_RS16140 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain IH404_RS16150 PF00884 Sulfatase IH404_RS16155 PF07660 Secretin and TonB N terminus short domain IH404_RS16155 PF07715 TonB-dependent Receptor Plug Domain IH404_RS16155 PF00593 TonB dependent receptor IH404_RS16165 PF00583 Acetyltransferase (GNAT) family IH404_RS16170 PF03969 AFG1-like ATPase IH404_RS16175 PF17432 Domain of unknown function (DUF3458_C) ARM repeats IH404_RS16175 PF01433 Peptidase family M1 domain IH404_RS16175 PF11940 Domain of unknown function (DUF3458) Ig-like fold IH404_RS16185 PF07023 Protein of unknown function (DUF1315) IH404_RS16190 PF01694 Rhomboid family IH404_RS16190 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease IH404_RS16195 PF00149 Calcineurin-like phosphoesterase IH404_RS16200 PF01513 ATP-NAD kinase IH404_RS16215 PF17863 AAA lid domain IH404_RS16215 PF07728 AAA domain (dynein-related subfamily) IH404_RS16215 PF13519 von Willebrand factor type A domain IH404_RS16220 PF02514 CobN/Magnesium Chelatase IH404_RS16225 PF02492 CobW/HypB/UreG, nucleotide-binding domain IH404_RS16225 PF07683 Cobalamin synthesis protein cobW C-terminal domain IH404_RS16250 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IH404_RS16255 PF01106 NifU-like domain IH404_RS16255 PF01521 Iron-sulphur cluster biosynthesis IH404_RS16260 PF01757 Acyltransferase family IH404_RS16270 PF02965 Vitamin B12 dependent methionine synthase, activation domain IH404_RS16270 PF00809 Pterin binding enzyme IH404_RS16270 PF02607 B12 binding domain IH404_RS16270 PF02310 B12 binding domain IH404_RS16270 PF02574 Homocysteine S-methyltransferase IH404_RS16300 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IH404_RS16300 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IH404_RS16310 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IH404_RS16310 PF00205 Thiamine pyrophosphate enzyme, central domain IH404_RS16310 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IH404_RS16315 PF03358 NADPH-dependent FMN reductase IH404_RS16340 PF00583 Acetyltransferase (GNAT) family IH404_RS16345 PF01276 Orn/Lys/Arg decarboxylase, major domain IH404_RS16345 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain IH404_RS16345 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain IH404_RS16350 PF00929 Exonuclease IH404_RS16355 PF00075 RNase H IH404_RS16365 PF16123 Hydroxyacylglutathione hydrolase C-terminus IH404_RS16365 PF00753 Metallo-beta-lactamase superfamily IH404_RS16370 PF01476 LysM domain IH404_RS16370 PF01464 Transglycosylase SLT domain IH404_RS16375 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IH404_RS16380 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IH404_RS16385 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS16390 PF12911 N-terminal TM domain of oligopeptide transport permease C IH404_RS16390 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS16395 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IH404_RS16395 PF00005 ABC transporter IH404_RS16400 PF12833 Helix-turn-helix domain IH404_RS16405 PF01810 LysE type translocator IH404_RS16410 PF00561 alpha/beta hydrolase fold IH404_RS16415 PF02378 Phosphotransferase system, EIIC IH404_RS16430 PF03793 PASTA domain IH404_RS16430 PF00069 Protein kinase domain IH404_RS16440 PF14331 ImcF-related N-terminal domain IH404_RS16440 PF06744 Type VI secretion protein IcmF C-terminal IH404_RS16440 PF06761 Intracellular multiplication and human macrophage-killing IH404_RS16450 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE IH404_RS16470 PF02954 Bacterial regulatory protein, Fis family IH404_RS16470 PF00072 Response regulator receiver domain IH404_RS16470 PF00158 Sigma-54 interaction domain IH404_RS16480 PF05947 Type VI secretion system, TssF IH404_RS16490 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath IH404_RS16505 PF05638 Type VI secretion system effector, Hcp IH404_RS16510 PF00248 Aldo/keto reductase family IH404_RS16520 PF05698 Bacterial trigger factor protein (TF) C-terminus IH404_RS16525 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IH404_RS16530 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS16535 PF12911 N-terminal TM domain of oligopeptide transport permease C IH404_RS16535 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS16540 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IH404_RS16540 PF00005 ABC transporter IH404_RS16545 PF02954 Bacterial regulatory protein, Fis family IH404_RS16545 PF00989 PAS fold IH404_RS16545 PF00158 Sigma-54 interaction domain IH404_RS16555 PF00106 short chain dehydrogenase IH404_RS16560 PF00501 AMP-binding enzyme IH404_RS16560 PF13193 AMP-binding enzyme C-terminal domain IH404_RS16565 PF08448 PAS fold IH404_RS16565 PF00072 Response regulator receiver domain IH404_RS16565 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS16565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS16565 PF13188 PAS domain IH404_RS16575 PF00294 pfkB family carbohydrate kinase IH404_RS16595 PF00005 ABC transporter IH404_RS16600 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS16605 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS16610 PF00497 Bacterial extracellular solute-binding proteins, family 3 IH404_RS16620 PF03471 Transporter associated domain IH404_RS16620 PF03741 Integral membrane protein TerC family IH404_RS16625 PF04198 Putative sugar-binding domain IH404_RS16630 PF02502 Ribose/Galactose Isomerase IH404_RS16635 PF00005 ABC transporter IH404_RS16640 PF02653 Branched-chain amino acid transport system / permease component IH404_RS16645 PF13407 Periplasmic binding protein domain IH404_RS16655 PF08240 Alcohol dehydrogenase GroES-like domain IH404_RS16655 PF00107 Zinc-binding dehydrogenase IH404_RS16660 PF02733 Dak1 domain IH404_RS16665 PF02734 DAK2 domain IH404_RS16670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS16670 PF03466 LysR substrate binding domain IH404_RS16675 PF07690 Major Facilitator Superfamily IH404_RS16680 PF08496 Peptidase family S49 N-terminal IH404_RS16680 PF01343 Peptidase family S49 IH404_RS16695 PF00293 NUDIX domain IH404_RS16705 PF12146 Serine aminopeptidase, S33 IH404_RS16710 PF01070 FMN-dependent dehydrogenase IH404_RS16715 PF08220 DeoR-like helix-turn-helix domain IH404_RS16715 PF00455 DeoR C terminal sensor domain IH404_RS16730 PF01965 DJ-1/PfpI family IH404_RS16750 PF18413 Neuraminidase-like domain IH404_RS16750 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain IH404_RS16755 PF12255 Insecticide toxin TcdB middle/C-terminal region IH404_RS16755 PF12256 Insecticide toxin TcdB middle/N-terminal region IH404_RS16755 PF03534 Salmonella virulence plasmid 65kDa B protein IH404_RS16760 PF05785 Rho-activating domain of cytotoxic necrotizing factor IH404_RS16760 PF18807 Tripartite Tc toxins repeat IH404_RS16780 PF02630 SCO1/SenC IH404_RS16805 PF01627 Hpt domain IH404_RS16805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS16805 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS16805 PF00072 Response regulator receiver domain IH404_RS16810 PF00196 Bacterial regulatory proteins, luxR family IH404_RS16810 PF00072 Response regulator receiver domain IH404_RS16830 PF12697 Alpha/beta hydrolase family IH404_RS16835 PF08446 PAS fold IH404_RS16835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS16835 PF01590 GAF domain IH404_RS16835 PF00360 Phytochrome region IH404_RS16835 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS16840 PF01678 Diaminopimelate epimerase IH404_RS16855 PF00106 short chain dehydrogenase IH404_RS16860 PF00248 Aldo/keto reductase family IH404_RS16865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS16865 PF03466 LysR substrate binding domain IH404_RS16870 PF01266 FAD dependent oxidoreductase IH404_RS16875 PF13416 Bacterial extracellular solute-binding protein IH404_RS16880 PF00120 Glutamine synthetase, catalytic domain IH404_RS16885 PF14525 AraC-binding-like domain IH404_RS16885 PF12833 Helix-turn-helix domain IH404_RS16895 PF07690 Major Facilitator Superfamily IH404_RS16905 PF02627 Carboxymuconolactone decarboxylase family IH404_RS16915 PF05726 Pirin C-terminal cupin domain IH404_RS16915 PF02678 Pirin IH404_RS16920 PF07690 Major Facilitator Superfamily IH404_RS16925 PF13533 Biotin-lipoyl like IH404_RS16930 PF00873 AcrB/AcrD/AcrF family IH404_RS16935 PF03527 RHS protein IH404_RS16935 PF05593 RHS Repeat IH404_RS16960 PF07687 Peptidase dimerisation domain IH404_RS16960 PF01546 Peptidase family M20/M25/M40 IH404_RS16965 PF05230 MASE2 domain IH404_RS16965 PF00990 Diguanylate cyclase, GGDEF domain IH404_RS16980 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) IH404_RS16980 PF00413 Matrixin IH404_RS16980 PF08548 Peptidase M10 serralysin C terminal IH404_RS16985 PF01037 Lrp/AsnC ligand binding domain IH404_RS16990 PF01053 Cys/Met metabolism PLP-dependent enzyme IH404_RS17000 PF00005 ABC transporter IH404_RS17000 PF02687 FtsX-like permease family IH404_RS17000 PF12704 MacB-like periplasmic core domain IH404_RS17005 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IH404_RS17010 PF00668 Condensation domain IH404_RS17010 PF13193 AMP-binding enzyme C-terminal domain IH404_RS17010 PF00501 AMP-binding enzyme IH404_RS17010 PF00550 Phosphopantetheine attachment site IH404_RS17010 PF00975 Thioesterase domain IH404_RS17015 PF00501 AMP-binding enzyme IH404_RS17015 PF00550 Phosphopantetheine attachment site IH404_RS17015 PF00668 Condensation domain IH404_RS17015 PF13193 AMP-binding enzyme C-terminal domain IH404_RS17025 PF09084 NMT1/THI5 like IH404_RS17030 PF07690 Major Facilitator Superfamily IH404_RS17040 PF13593 SBF-like CPA transporter family (DUF4137) IH404_RS17045 PF12833 Helix-turn-helix domain IH404_RS17055 PF04107 Glutamate-cysteine ligase family 2(GCS2) IH404_RS17060 PF05175 Methyltransferase small domain IH404_RS17090 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS17095 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS17100 PF17912 MalK OB fold domain IH404_RS17100 PF00005 ABC transporter IH404_RS17105 PF00005 ABC transporter IH404_RS17105 PF17912 MalK OB fold domain IH404_RS17110 PF02954 Bacterial regulatory protein, Fis family IH404_RS17110 PF00158 Sigma-54 interaction domain IH404_RS17110 PF01590 GAF domain IH404_RS17135 PF00550 Phosphopantetheine attachment site IH404_RS17135 PF00668 Condensation domain IH404_RS17135 PF13193 AMP-binding enzyme C-terminal domain IH404_RS17135 PF00501 AMP-binding enzyme IH404_RS17145 PF01027 Inhibitor of apoptosis-promoting Bax1 IH404_RS17150 PF01565 FAD binding domain IH404_RS17150 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain IH404_RS17155 PF01451 Low molecular weight phosphotyrosine protein phosphatase IH404_RS17160 PF02348 Cytidylyltransferase IH404_RS17165 PF03966 Trm112p-like protein IH404_RS17170 PF02606 Tetraacyldisaccharide-1-P 4'-kinase IH404_RS17175 PF02472 Biopolymer transport protein ExbD/TolR IH404_RS17180 PF01618 MotA/TolQ/ExbB proton channel family IH404_RS17185 PF00753 Metallo-beta-lactamase superfamily IH404_RS17185 PF03772 Competence protein IH404_RS17195 PF16750 Sensor domain of 2-component histidine kinase IH404_RS17195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS17195 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS17195 PF00672 HAMP domain IH404_RS17200 PF00072 Response regulator receiver domain IH404_RS17200 PF00486 Transcriptional regulatory protein, C terminal IH404_RS17205 PF00672 HAMP domain IH404_RS17205 PF01627 Hpt domain IH404_RS17205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS17205 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IH404_RS17205 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS17205 PF00072 Response regulator receiver domain IH404_RS17210 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IH404_RS17210 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IH404_RS17230 PF00085 Thioredoxin IH404_RS17235 PF03960 ArsC family IH404_RS17240 PF03358 NADPH-dependent FMN reductase IH404_RS17255 PF01171 PP-loop family IH404_RS17260 PF04893 Yip1 domain IH404_RS17265 PF17283 SprT-like zinc ribbon domain IH404_RS17265 PF10263 SprT-like family IH404_RS17270 PF02515 CoA-transferase family III IH404_RS17275 PF02635 DsrE/DsrF-like family IH404_RS17280 PF02635 DsrE/DsrF-like family IH404_RS17290 PF04358 DsrC like protein IH404_RS17295 PF00591 Glycosyl transferase family, a/b domain IH404_RS17295 PF02885 Glycosyl transferase family, helical bundle domain IH404_RS17300 PF13409 Glutathione S-transferase, N-terminal domain IH404_RS17305 PF14824 Sirohaem biosynthesis protein central IH404_RS17305 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IH404_RS17305 PF10414 Sirohaem synthase dimerisation region IH404_RS17310 PF02403 Seryl-tRNA synthetase N-terminal domain IH404_RS17310 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IH404_RS17315 PF02537 CrcB-like protein, Camphor Resistance (CrcB) IH404_RS17320 PF16193 AAA C-terminal domain IH404_RS17320 PF12002 MgsA AAA+ ATPase C terminal IH404_RS17320 PF00004 ATPase family associated with various cellular activities (AAA) IH404_RS17325 PF03548 Outer membrane lipoprotein carrier protein LolA IH404_RS17330 PF13491 4TM region of DNA translocase FtsK/SpoIIIE IH404_RS17330 PF17854 FtsK alpha domain IH404_RS17330 PF09397 Ftsk gamma domain IH404_RS17330 PF01580 FtsK/SpoIIIE family IH404_RS17335 PF03588 Leucyl/phenylalanyl-tRNA protein transferase IH404_RS17340 PF04376 Arginine-tRNA-protein transferase, N terminus IH404_RS17340 PF04377 Arginine-tRNA-protein transferase, C terminus IH404_RS17345 PF01176 Translation initiation factor 1A / IF-1 IH404_RS17350 PF17871 AAA lid domain IH404_RS17350 PF02861 Clp amino terminal domain, pathogenicity island component IH404_RS17350 PF00004 ATPase family associated with various cellular activities (AAA) IH404_RS17350 PF07724 AAA domain (Cdc48 subfamily) IH404_RS17350 PF10431 C-terminal, D2-small domain, of ClpB protein IH404_RS17355 PF02617 ATP-dependent Clp protease adaptor protein ClpS IH404_RS17360 PF00313 'Cold-shock' DNA-binding domain IH404_RS17365 PF00180 Isocitrate/isopropylmalate dehydrogenase IH404_RS17370 PF03971 Monomeric isocitrate dehydrogenase IH404_RS17375 PF00293 NUDIX domain IH404_RS17385 PF04356 Protein of unknown function (DUF489) IH404_RS17390 PF08328 Adenylosuccinate lyase C-terminal IH404_RS17390 PF00206 Lyase IH404_RS17395 PF08007 Cupin superfamily protein IH404_RS17400 PF13673 Acetyltransferase (GNAT) domain IH404_RS17410 PF00463 Isocitrate lyase family IH404_RS17415 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 IH404_RS17420 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit IH404_RS17425 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit IH404_RS17425 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit IH404_RS17435 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit IH404_RS17435 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region IH404_RS17440 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region IH404_RS17440 PF00384 Molybdopterin oxidoreductase IH404_RS17440 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IH404_RS17445 PF00146 NADH dehydrogenase IH404_RS17450 PF12838 4Fe-4S dicluster domain IH404_RS17455 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 IH404_RS17460 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L IH404_RS17465 PF00361 Proton-conducting membrane transporter IH404_RS17465 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus IH404_RS17470 PF00361 Proton-conducting membrane transporter IH404_RS17475 PF00361 Proton-conducting membrane transporter IH404_RS17485 PF16861 Carbamoyltransferase C-terminus IH404_RS17485 PF02543 Carbamoyltransferase N-terminus IH404_RS17530 PF00171 Aldehyde dehydrogenase family IH404_RS17550 PF02687 FtsX-like permease family IH404_RS17550 PF12704 MacB-like periplasmic core domain IH404_RS17550 PF00005 ABC transporter IH404_RS17555 PF12704 MacB-like periplasmic core domain IH404_RS17555 PF02687 FtsX-like permease family IH404_RS17555 PF00005 ABC transporter IH404_RS17565 PF13533 Biotin-lipoyl like IH404_RS17595 PF00361 Proton-conducting membrane transporter IH404_RS17595 PF13244 Domain of unknown function (DUF4040) IH404_RS17595 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter IH404_RS17595 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus IH404_RS17600 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L IH404_RS17605 PF00361 Proton-conducting membrane transporter IH404_RS17615 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) IH404_RS17620 PF03334 Na+/H+ antiporter subunit IH404_RS17630 PF09190 DALR domain IH404_RS17630 PF01406 tRNA synthetases class I (C) catalytic domain IH404_RS17635 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain IH404_RS17635 PF00749 tRNA synthetases class I (E and Q), catalytic domain IH404_RS17640 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD IH404_RS17645 PF00149 Calcineurin-like phosphoesterase IH404_RS17650 PF07690 Major Facilitator Superfamily IH404_RS17655 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IH404_RS17655 PF00529 HlyD membrane-fusion protein of T1SS IH404_RS17660 PF02321 Outer membrane efflux protein IH404_RS17665 PF01047 MarR family IH404_RS17670 PF04357 TamB, inner membrane protein subunit of TAM complex IH404_RS17675 PF01103 Surface antigen IH404_RS17675 PF07244 Surface antigen variable number repeat IH404_RS17675 PF17243 POTRA domain TamA domain 1 IH404_RS17685 PF03372 Endonuclease/Exonuclease/phosphatase family IH404_RS17690 PF12849 PBP superfamily domain IH404_RS17695 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IH404_RS17695 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IH404_RS17695 PF02770 Acyl-CoA dehydrogenase, middle domain IH404_RS17700 PF03466 LysR substrate binding domain IH404_RS17700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS17705 PF13411 MerR HTH family regulatory protein IH404_RS17710 PF00682 HMGL-like IH404_RS17720 PF00501 AMP-binding enzyme IH404_RS17720 PF13193 AMP-binding enzyme C-terminal domain IH404_RS17725 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IH404_RS17725 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IH404_RS17725 PF02770 Acyl-CoA dehydrogenase, middle domain IH404_RS17730 PF01039 Carboxyl transferase domain IH404_RS17735 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IH404_RS17735 PF00378 Enoyl-CoA hydratase/isomerase IH404_RS17735 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IH404_RS17740 PF00289 Biotin carboxylase, N-terminal domain IH404_RS17740 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IH404_RS17740 PF02785 Biotin carboxylase C-terminal domain IH404_RS17740 PF00364 Biotin-requiring enzyme IH404_RS17755 PF18027 Cytosolic carboxypeptidase N-terminal domain IH404_RS17755 PF00246 Zinc carboxypeptidase IH404_RS17760 PF01292 Prokaryotic cytochrome b561 IH404_RS17770 PF00378 Enoyl-CoA hydratase/isomerase IH404_RS17780 PF00550 Phosphopantetheine attachment site IH404_RS17780 PF07993 Male sterility protein IH404_RS17780 PF13193 AMP-binding enzyme C-terminal domain IH404_RS17780 PF00501 AMP-binding enzyme IH404_RS17780 PF00668 Condensation domain IH404_RS17785 PF04542 Sigma-70 region 2 IH404_RS17785 PF08281 Sigma-70, region 4 IH404_RS17805 PF02753 Pili assembly chaperone PapD, C-terminal domain IH404_RS17805 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain IH404_RS17830 PF03969 AFG1-like ATPase IH404_RS17840 PF01709 Transcriptional regulator IH404_RS17845 PF07690 Major Facilitator Superfamily IH404_RS17850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS17850 PF03466 LysR substrate binding domain IH404_RS17855 PF03466 LysR substrate binding domain IH404_RS17855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS17860 PF00266 Aminotransferase class-V IH404_RS17870 PF01292 Prokaryotic cytochrome b561 IH404_RS17880 PF07992 Pyridine nucleotide-disulphide oxidoreductase IH404_RS17880 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IH404_RS17885 PF00795 Carbon-nitrogen hydrolase IH404_RS17890 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term IH404_RS17890 PF12833 Helix-turn-helix domain IH404_RS17895 PF00456 Transketolase, thiamine diphosphate binding domain IH404_RS17895 PF17831 Pyruvate dehydrogenase E1 component middle domain IH404_RS17900 PF01047 MarR family IH404_RS17905 PF00456 Transketolase, thiamine diphosphate binding domain IH404_RS17905 PF17831 Pyruvate dehydrogenase E1 component middle domain IH404_RS17915 PF03466 LysR substrate binding domain IH404_RS17915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS17920 PF07690 Major Facilitator Superfamily IH404_RS17925 PF06965 Na+/H+ antiporter 1 IH404_RS17930 PF05698 Bacterial trigger factor protein (TF) C-terminus IH404_RS17935 PF00216 Bacterial DNA-binding protein IH404_RS17940 PF02190 ATP-dependent protease La (LON) substrate-binding domain IH404_RS17940 PF05362 Lon protease (S16) C-terminal proteolytic domain IH404_RS17940 PF00004 ATPase family associated with various cellular activities (AAA) IH404_RS17945 PF07724 AAA domain (Cdc48 subfamily) IH404_RS17945 PF10431 C-terminal, D2-small domain, of ClpB protein IH404_RS17945 PF06689 ClpX C4-type zinc finger IH404_RS17950 PF00574 Clp protease IH404_RS17955 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IH404_RS17955 PF05697 Bacterial trigger factor protein (TF) IH404_RS17955 PF05698 Bacterial trigger factor protein (TF) C-terminus IH404_RS17980 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain IH404_RS17980 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain IH404_RS17985 PF00768 D-alanyl-D-alanine carboxypeptidase IH404_RS18005 PF00873 AcrB/AcrD/AcrF family IH404_RS18010 PF13533 Biotin-lipoyl like IH404_RS18015 PF02321 Outer membrane efflux protein IH404_RS18020 PF01546 Peptidase family M20/M25/M40 IH404_RS18020 PF07687 Peptidase dimerisation domain IH404_RS18025 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin IH404_RS18030 PF01979 Amidohydrolase family IH404_RS18035 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster IH404_RS18035 PF07992 Pyridine nucleotide-disulphide oxidoreductase IH404_RS18040 PF01180 Dihydroorotate dehydrogenase IH404_RS18045 PF00440 Bacterial regulatory proteins, tetR family IH404_RS18045 PF08362 YcdC-like protein, C-terminal region IH404_RS18060 PF03573 outer membrane porin, OprD family IH404_RS18065 PF01370 NAD dependent epimerase/dehydratase family IH404_RS18070 PF08450 SMP-30/Gluconolactonase/LRE-like region IH404_RS18075 PF03480 Bacterial extracellular solute-binding protein, family 7 IH404_RS18085 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component IH404_RS18090 PF13533 Biotin-lipoyl like IH404_RS18120 PF00753 Metallo-beta-lactamase superfamily IH404_RS18125 PF01037 Lrp/AsnC ligand binding domain IH404_RS18130 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal IH404_RS18130 PF00676 Dehydrogenase E1 component IH404_RS18135 PF02779 Transketolase, pyrimidine binding domain IH404_RS18135 PF02780 Transketolase, C-terminal domain IH404_RS18140 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IH404_RS18140 PF00364 Biotin-requiring enzyme IH404_RS18140 PF02817 e3 binding domain IH404_RS18145 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IH404_RS18145 PF07992 Pyridine nucleotide-disulphide oxidoreductase IH404_RS18150 PF01063 Amino-transferase class IV IH404_RS18155 PF00583 Acetyltransferase (GNAT) family IH404_RS18170 PF00561 alpha/beta hydrolase fold IH404_RS18175 PF08240 Alcohol dehydrogenase GroES-like domain IH404_RS18175 PF00107 Zinc-binding dehydrogenase IH404_RS18175 PF00109 Beta-ketoacyl synthase, N-terminal domain IH404_RS18175 PF02801 Beta-ketoacyl synthase, C-terminal domain IH404_RS18175 PF08659 KR domain IH404_RS18175 PF16197 Ketoacyl-synthetase C-terminal extension IH404_RS18175 PF00550 Phosphopantetheine attachment site IH404_RS18175 PF14765 Polyketide synthase dehydratase IH404_RS18175 PF00698 Acyl transferase domain IH404_RS18180 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IH404_RS18190 PF16925 Tetracyclin repressor-like, C-terminal domain IH404_RS18190 PF00440 Bacterial regulatory proteins, tetR family IH404_RS18195 PF01965 DJ-1/PfpI family IH404_RS18205 PF02673 Bacitracin resistance protein BacA IH404_RS18220 PF14759 Reductase C-terminal IH404_RS18220 PF07992 Pyridine nucleotide-disulphide oxidoreductase IH404_RS18235 PF00356 Bacterial regulatory proteins, lacI family IH404_RS18240 PF13426 PAS domain IH404_RS18240 PF02954 Bacterial regulatory protein, Fis family IH404_RS18240 PF00158 Sigma-54 interaction domain IH404_RS18245 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IH404_RS18245 PF02894 Oxidoreductase family, C-terminal alpha/beta domain IH404_RS18255 PF13407 Periplasmic binding protein domain IH404_RS18260 PF02798 Glutathione S-transferase, N-terminal domain IH404_RS18265 PF07690 Major Facilitator Superfamily IH404_RS18270 PF12852 Cupin IH404_RS18270 PF12833 Helix-turn-helix domain IH404_RS18285 PF01263 Aldose 1-epimerase IH404_RS18320 PF00005 ABC transporter IH404_RS18325 PF00300 Histidine phosphatase superfamily (branch 1) IH404_RS18330 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase IH404_RS18335 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase IH404_RS18340 PF03466 LysR substrate binding domain IH404_RS18340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS18360 PF00501 AMP-binding enzyme IH404_RS18360 PF13193 AMP-binding enzyme C-terminal domain IH404_RS18360 PF00550 Phosphopantetheine attachment site IH404_RS18360 PF00668 Condensation domain IH404_RS18370 PF02321 Outer membrane efflux protein IH404_RS18380 PF01557 Fumarylacetoacetate (FAA) hydrolase family IH404_RS18385 PF01557 Fumarylacetoacetate (FAA) hydrolase family IH404_RS18390 PF00171 Aldehyde dehydrogenase family IH404_RS18395 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase IH404_RS18400 PF02962 5-carboxymethyl-2-hydroxymuconate isomerase IH404_RS18405 PF07690 Major Facilitator Superfamily IH404_RS18410 PF01557 Fumarylacetoacetate (FAA) hydrolase family IH404_RS18415 PF03328 HpcH/HpaI aldolase/citrate lyase family IH404_RS18420 PF01047 MarR family IH404_RS18425 PF01266 FAD dependent oxidoreductase IH404_RS18435 PF10703 MoaF N-terminal domain IH404_RS18435 PF17409 MoaF C-terminal domain IH404_RS18450 PF12852 Cupin IH404_RS18450 PF12833 Helix-turn-helix domain IH404_RS18460 PF13520 Amino acid permease IH404_RS18475 PF08028 Acyl-CoA dehydrogenase, C-terminal domain IH404_RS18480 PF00171 Aldehyde dehydrogenase family IH404_RS18515 PF03466 LysR substrate binding domain IH404_RS18515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS18520 PF03466 LysR substrate binding domain IH404_RS18520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS18525 PF02798 Glutathione S-transferase, N-terminal domain IH404_RS18530 PF00248 Aldo/keto reductase family IH404_RS18545 PF02753 Pili assembly chaperone PapD, C-terminal domain IH404_RS18545 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain IH404_RS18555 PF09456 RcsC Alpha-Beta-Loop (ABL) IH404_RS18555 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS18555 PF00072 Response regulator receiver domain IH404_RS18555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS18560 PF00990 Diguanylate cyclase, GGDEF domain IH404_RS18560 PF00989 PAS fold IH404_RS18560 PF01590 GAF domain IH404_RS18560 PF00563 EAL domain IH404_RS18565 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS18565 PF00072 Response regulator receiver domain IH404_RS18565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS18565 PF09456 RcsC Alpha-Beta-Loop (ABL) IH404_RS18570 PF00196 Bacterial regulatory proteins, luxR family IH404_RS18570 PF00072 Response regulator receiver domain IH404_RS18580 PF02753 Pili assembly chaperone PapD, C-terminal domain IH404_RS18580 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain IH404_RS18585 PF13954 PapC N-terminal domain IH404_RS18585 PF00577 Outer membrane usher protein IH404_RS18585 PF13953 PapC C-terminal domain IH404_RS18605 PF01042 Endoribonuclease L-PSP IH404_RS18610 PF01593 Flavin containing amine oxidoreductase IH404_RS18615 PF00497 Bacterial extracellular solute-binding proteins, family 3 IH404_RS18620 PF00005 ABC transporter IH404_RS18625 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS18630 PF07715 TonB-dependent Receptor Plug Domain IH404_RS18630 PF00593 TonB dependent receptor IH404_RS18635 PF00263 Bacterial type II and III secretion system protein IH404_RS18635 PF03958 Bacterial type II/III secretion system short domain IH404_RS18655 PF03934 Type II secretion system (T2SS), protein K IH404_RS18665 PF07963 Prokaryotic N-terminal methylation motif IH404_RS18670 PF12019 Type II transport protein GspH IH404_RS18670 PF07963 Prokaryotic N-terminal methylation motif IH404_RS18675 PF08334 Type II secretion system (T2SS), protein G IH404_RS18680 PF00482 Type II secretion system (T2SS), protein F IH404_RS18685 PF00437 Type II/IV secretion system protein IH404_RS18685 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain IH404_RS18690 PF00356 Bacterial regulatory proteins, lacI family IH404_RS18695 PF00593 TonB dependent receptor IH404_RS18695 PF07715 TonB-dependent Receptor Plug Domain IH404_RS18700 PF00296 Luciferase-like monooxygenase IH404_RS18705 PF09084 NMT1/THI5 like IH404_RS18710 PF00230 Major intrinsic protein IH404_RS18730 PF13302 Acetyltransferase (GNAT) domain IH404_RS18775 PF00216 Bacterial DNA-binding protein IH404_RS18780 PF01588 Putative tRNA binding domain IH404_RS18780 PF03483 B3/4 domain IH404_RS18780 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain IH404_RS18780 PF03484 tRNA synthetase B5 domain IH404_RS18780 PF03147 Ferredoxin-fold anticodon binding domain IH404_RS18785 PF01409 tRNA synthetases class II core domain (F) IH404_RS18785 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain IH404_RS18790 PF00453 Ribosomal protein L20 IH404_RS18795 PF01632 Ribosomal protein L35 IH404_RS18800 PF00707 Translation initiation factor IF-3, C-terminal domain IH404_RS18800 PF05198 Translation initiation factor IF-3, N-terminal domain IH404_RS18805 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IH404_RS18805 PF02824 TGS domain IH404_RS18805 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IH404_RS18805 PF03129 Anticodon binding domain IH404_RS18815 PF00313 'Cold-shock' DNA-binding domain IH404_RS18835 PF01156 Inosine-uridine preferring nucleoside hydrolase IH404_RS18840 PF05025 RbsD / FucU transport protein family IH404_RS18845 PF00294 pfkB family carbohydrate kinase IH404_RS18850 PF00356 Bacterial regulatory proteins, lacI family IH404_RS18855 PF02653 Branched-chain amino acid transport system / permease component IH404_RS18860 PF00005 ABC transporter IH404_RS18865 PF13407 Periplasmic binding protein domain IH404_RS18870 PF17763 Glutaminase/Asparaginase C-terminal domain IH404_RS18870 PF00710 Asparaginase, N-terminal IH404_RS18880 PF04231 Endonuclease I IH404_RS18890 PF02599 Global regulator protein family IH404_RS18900 PF13419 Haloacid dehalogenase-like hydrolase IH404_RS18910 PF00486 Transcriptional regulatory protein, C terminal IH404_RS18910 PF00072 Response regulator receiver domain IH404_RS18915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS18915 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS18915 PF00672 HAMP domain IH404_RS18925 PF01470 Pyroglutamyl peptidase IH404_RS18945 PF01266 FAD dependent oxidoreductase IH404_RS18950 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IH404_RS18950 PF00034 Cytochrome c IH404_RS18955 PF00111 2Fe-2S iron-sulfur cluster binding domain IH404_RS18955 PF01799 [2Fe-2S] binding domain IH404_RS18960 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase IH404_RS18960 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain IH404_RS18990 PF01053 Cys/Met metabolism PLP-dependent enzyme IH404_RS18995 PF00156 Phosphoribosyl transferase domain IH404_RS19000 PF02674 Colicin V production protein IH404_RS19005 PF05036 Sporulation related domain IH404_RS19010 PF02875 Mur ligase family, glutamate ligase domain IH404_RS19010 PF08245 Mur ligase middle domain IH404_RS19015 PF01039 Carboxyl transferase domain IH404_RS19015 PF17848 Acetyl-coA carboxylase zinc finger domain IH404_RS19020 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase IH404_RS19025 PF01416 tRNA pseudouridine synthase IH404_RS19035 PF01118 Semialdehyde dehydrogenase, NAD binding domain IH404_RS19035 PF02774 Semialdehyde dehydrogenase, dimerisation domain IH404_RS19040 PF02774 Semialdehyde dehydrogenase, dimerisation domain IH404_RS19040 PF01118 Semialdehyde dehydrogenase, NAD binding domain IH404_RS19045 PF00180 Isocitrate/isopropylmalate dehydrogenase IH404_RS19050 PF08241 Methyltransferase domain IH404_RS19055 PF00694 Aconitase C-terminal domain IH404_RS19060 PF00330 Aconitase family (aconitate hydratase) IH404_RS19065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS19070 PF00990 Diguanylate cyclase, GGDEF domain IH404_RS19070 PF03707 Bacterial signalling protein N terminal repeat IH404_RS19070 PF00563 EAL domain IH404_RS19075 PF01207 Dihydrouridine synthase (Dus) IH404_RS19110 PF00749 tRNA synthetases class I (E and Q), catalytic domain IH404_RS19115 PF17757 UvrB interaction domain IH404_RS19115 PF04851 Type III restriction enzyme, res subunit IH404_RS19115 PF02151 UvrB/uvrC motif IH404_RS19115 PF00271 Helicase conserved C-terminal domain IH404_RS19115 PF12344 Ultra-violet resistance protein B IH404_RS19120 PF00155 Aminotransferase class I and II IH404_RS19130 PF03466 LysR substrate binding domain IH404_RS19130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS19135 PF00171 Aldehyde dehydrogenase family IH404_RS19145 PF16485 Protealysin propeptide IH404_RS19145 PF02868 Thermolysin metallopeptidase, alpha-helical domain IH404_RS19145 PF01447 Thermolysin metallopeptidase, catalytic domain IH404_RS19150 PF01223 DNA/RNA non-specific endonuclease IH404_RS19155 PF01497 Periplasmic binding protein IH404_RS19160 PF01032 FecCD transport family IH404_RS19165 PF00005 ABC transporter IH404_RS19180 PF03073 TspO/MBR family IH404_RS19235 PF13302 Acetyltransferase (GNAT) domain IH404_RS19260 PF12833 Helix-turn-helix domain IH404_RS19260 PF01965 DJ-1/PfpI family IH404_RS19265 PF00324 Amino acid permease IH404_RS19285 PF04816 tRNA (adenine(22)-N(1))-methyltransferase IH404_RS19290 PF07729 FCD domain IH404_RS19290 PF00392 Bacterial regulatory proteins, gntR family IH404_RS19295 PF07690 Major Facilitator Superfamily IH404_RS19300 PF13378 Enolase C-terminal domain-like IH404_RS19300 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain IH404_RS19305 PF00704 Glycosyl hydrolases family 18 IH404_RS19320 PF05973 Phage derived protein Gp49-like (DUF891) IH404_RS19325 PF14602 Hexapeptide repeat of succinyl-transferase IH404_RS19325 PF00132 Bacterial transferase hexapeptide (six repeats) IH404_RS19325 PF12804 MobA-like NTP transferase domain IH404_RS19345 PF00155 Aminotransferase class I and II IH404_RS19345 PF00392 Bacterial regulatory proteins, gntR family IH404_RS19350 PF02548 Ketopantoate hydroxymethyltransferase IH404_RS19370 PF00583 Acetyltransferase (GNAT) family IH404_RS19375 PF04143 Sulphur transport IH404_RS19390 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IH404_RS19390 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IH404_RS19400 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS19400 PF08521 Two-component sensor kinase N-terminal IH404_RS19400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS19405 PF00486 Transcriptional regulatory protein, C terminal IH404_RS19405 PF00072 Response regulator receiver domain IH404_RS19415 PF07690 Major Facilitator Superfamily IH404_RS19420 PF03466 LysR substrate binding domain IH404_RS19420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS19440 PF03466 LysR substrate binding domain IH404_RS19440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS19445 PF01070 FMN-dependent dehydrogenase IH404_RS19450 PF00990 Diguanylate cyclase, GGDEF domain IH404_RS19460 PF08448 PAS fold IH404_RS19460 PF00990 Diguanylate cyclase, GGDEF domain IH404_RS19460 PF00563 EAL domain IH404_RS19465 PF00005 ABC transporter IH404_RS19465 PF00664 ABC transporter transmembrane region IH404_RS19475 PF00581 Rhodanese-like domain IH404_RS19475 PF17773 UPF0176 acylphosphatase like domain IH404_RS19480 PF18807 Tripartite Tc toxins repeat IH404_RS19480 PF14431 YwqJ-like deaminase IH404_RS19485 PF03538 Salmonella virulence plasmid 28.1kDa A protein IH404_RS19490 PF18413 Neuraminidase-like domain IH404_RS19490 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain IH404_RS19495 PF18413 Neuraminidase-like domain IH404_RS19495 PF18276 Tc toxin complex TcA C-terminal TcB-binding domain IH404_RS19500 PF03534 Salmonella virulence plasmid 65kDa B protein IH404_RS19500 PF12255 Insecticide toxin TcdB middle/C-terminal region IH404_RS19500 PF12256 Insecticide toxin TcdB middle/N-terminal region IH404_RS19505 PF18807 Tripartite Tc toxins repeat IH404_RS19505 PF05785 Rho-activating domain of cytotoxic necrotizing factor IH404_RS19510 PF18807 Tripartite Tc toxins repeat IH404_RS19510 PF14431 YwqJ-like deaminase IH404_RS19515 PF01722 BolA-like protein IH404_RS19525 PF00206 Lyase IH404_RS19525 PF10415 Fumarase C C-terminus IH404_RS19530 PF00892 EamA-like transporter family IH404_RS19535 PF00108 Thiolase, N-terminal domain IH404_RS19535 PF02803 Thiolase, C-terminal domain IH404_RS19540 PF03976 Polyphosphate kinase 2 (PPK2) IH404_RS19550 PF05430 S-adenosyl-L-methionine-dependent methyltransferase IH404_RS19550 PF01266 FAD dependent oxidoreductase IH404_RS19555 PF13537 Glutamine amidotransferase domain IH404_RS19555 PF00733 Asparagine synthase IH404_RS19560 PF08245 Mur ligase middle domain IH404_RS19560 PF08443 RimK-like ATP-grasp domain IH404_RS19560 PF02875 Mur ligase family, glutamate ligase domain IH404_RS19570 PF06794 Uncharacterised protein family (UPF0270) IH404_RS19575 PF02599 Global regulator protein family IH404_RS19580 PF00106 short chain dehydrogenase IH404_RS19580 PF00561 alpha/beta hydrolase fold IH404_RS19590 PF00884 Sulfatase IH404_RS19610 PF13193 AMP-binding enzyme C-terminal domain IH404_RS19610 PF00501 AMP-binding enzyme IH404_RS19620 PF03472 Autoinducer binding domain IH404_RS19620 PF00196 Bacterial regulatory proteins, luxR family IH404_RS19625 PF03079 ARD/ARD' family IH404_RS19635 PF01264 Chorismate synthase IH404_RS19640 PF12146 Serine aminopeptidase, S33 IH404_RS19640 PF13026 Protein of unknown function (DUF3887) IH404_RS19650 PF05175 Methyltransferase small domain IH404_RS19665 PF01713 Smr domain IH404_RS19670 PF01227 GTP cyclohydrolase I IH404_RS19690 PF03600 Citrate transporter IH404_RS19695 PF03466 LysR substrate binding domain IH404_RS19695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS19700 PF02798 Glutathione S-transferase, N-terminal domain IH404_RS19705 PF00860 Permease family IH404_RS19720 PF00576 HIUase/Transthyretin family IH404_RS19725 PF01522 Polysaccharide deacetylase IH404_RS19730 PF09349 OHCU decarboxylase IH404_RS19730 PF01014 Uricase IH404_RS19735 PF03561 Allantoicase repeat IH404_RS19740 PF04115 Ureidoglycolate lyase IH404_RS19750 PF00860 Permease family IH404_RS19770 PF03279 Bacterial lipid A biosynthesis acyltransferase IH404_RS19775 PF03775 Septum formation inhibitor MinC, C-terminal domain IH404_RS19775 PF05209 Septum formation inhibitor MinC, N-terminal domain IH404_RS19780 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IH404_RS19785 PF03776 Septum formation topological specificity factor MinE IH404_RS19790 PF00849 RNA pseudouridylate synthase IH404_RS19795 PF02127 Aminopeptidase I zinc metalloprotease (M18) IH404_RS19805 PF00924 Mechanosensitive ion channel IH404_RS19810 PF03621 MbtH-like protein IH404_RS19815 PF00202 Aminotransferase class-III IH404_RS19820 PF01510 N-acetylmuramoyl-L-alanine amidase IH404_RS19825 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS19825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS19830 PF00486 Transcriptional regulatory protein, C terminal IH404_RS19830 PF00072 Response regulator receiver domain IH404_RS19835 PF02683 Cytochrome C biogenesis protein transmembrane region IH404_RS19835 PF11412 Disulphide bond corrector protein DsbC IH404_RS19840 PF00578 AhpC/TSA family IH404_RS19845 PF13098 Thioredoxin-like domain IH404_RS19850 PF00501 AMP-binding enzyme IH404_RS19850 PF00668 Condensation domain IH404_RS19850 PF13193 AMP-binding enzyme C-terminal domain IH404_RS19850 PF00668 Condensation domain IH404_RS19850 PF00501 AMP-binding enzyme IH404_RS19850 PF13193 AMP-binding enzyme C-terminal domain IH404_RS19850 PF00550 Phosphopantetheine attachment site IH404_RS19850 PF00550 Phosphopantetheine attachment site IH404_RS19855 PF00975 Thioesterase domain IH404_RS19870 PF00440 Bacterial regulatory proteins, tetR family IH404_RS19870 PF17932 Tetracyclin repressor-like, C-terminal domain IH404_RS19885 PF01039 Carboxyl transferase domain IH404_RS19890 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IH404_RS19890 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IH404_RS19890 PF02770 Acyl-CoA dehydrogenase, middle domain IH404_RS19895 PF00378 Enoyl-CoA hydratase/isomerase IH404_RS19900 PF00364 Biotin-requiring enzyme IH404_RS19900 PF00289 Biotin carboxylase, N-terminal domain IH404_RS19900 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IH404_RS19900 PF02785 Biotin carboxylase C-terminal domain IH404_RS19910 PF06865 Pyrimidine/purine nucleoside phosphorylase IH404_RS19915 PF03473 MOSC domain IH404_RS19915 PF00111 2Fe-2S iron-sulfur cluster binding domain IH404_RS19915 PF03476 MOSC N-terminal beta barrel domain IH404_RS19930 PF05231 MASE1 IH404_RS19930 PF07730 Histidine kinase IH404_RS19930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS19935 PF00072 Response regulator receiver domain IH404_RS19935 PF00196 Bacterial regulatory proteins, luxR family IH404_RS19940 PF00781 Diacylglycerol kinase catalytic domain IH404_RS19950 PF01584 CheW-like domain IH404_RS19960 PF13614 AAA domain IH404_RS19965 PF00691 OmpA family IH404_RS19965 PF13677 Membrane MotB of proton-channel complex MotA/MotB IH404_RS19970 PF01618 MotA/TolQ/ExbB proton channel family IH404_RS19975 PF01339 CheB methylesterase IH404_RS19975 PF00072 Response regulator receiver domain IH404_RS19980 PF01584 CheW-like domain IH404_RS19980 PF00072 Response regulator receiver domain IH404_RS19980 PF02895 Signal transducing histidine kinase, homodimeric domain IH404_RS19980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS19980 PF01627 Hpt domain IH404_RS19985 PF04344 Chemotaxis phosphatase, CheZ IH404_RS19990 PF00072 Response regulator receiver domain IH404_RS19995 PF04542 Sigma-70 region 2 IH404_RS19995 PF04539 Sigma-70 region 3 IH404_RS19995 PF04545 Sigma-70, region 4 IH404_RS20000 PF10609 NUBPL iron-transfer P-loop NTPase IH404_RS20005 PF00448 SRP54-type protein, GTPase domain IH404_RS20010 PF00771 FHIPEP family IH404_RS20020 PF00313 'Cold-shock' DNA-binding domain IH404_RS20030 PF00313 'Cold-shock' DNA-binding domain IH404_RS20035 PF01312 FlhB HrpN YscU SpaS Family IH404_RS20040 PF01311 Bacterial export proteins, family 1 IH404_RS20045 PF01313 Bacterial export proteins, family 3 IH404_RS20050 PF00813 FliP family IH404_RS20055 PF04347 Flagellar biosynthesis protein, FliO IH404_RS20060 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IH404_RS20065 PF02154 Flagellar motor switch protein FliM IH404_RS20065 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IH404_RS20085 PF00072 Response regulator receiver domain IH404_RS20085 PF00486 Transcriptional regulatory protein, C terminal IH404_RS20090 PF13466 STAS domain IH404_RS20100 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IH404_RS20100 PF18269 T3SS EscN ATPase C-terminal domain IH404_RS20110 PF14841 FliG middle domain IH404_RS20110 PF01706 FliG C-terminal domain IH404_RS20110 PF14842 FliG N-terminal domain IH404_RS20115 PF08345 Flagellar M-ring protein C-terminal IH404_RS20115 PF01514 Secretory protein of YscJ/FliF family IH404_RS20120 PF02049 Flagellar hook-basal body complex protein FliE IH404_RS20125 PF02954 Bacterial regulatory protein, Fis family IH404_RS20125 PF00158 Sigma-54 interaction domain IH404_RS20125 PF00072 Response regulator receiver domain IH404_RS20130 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS20130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS20130 PF13188 PAS domain IH404_RS20135 PF06490 Flagellar regulatory protein FleQ IH404_RS20135 PF02954 Bacterial regulatory protein, Fis family IH404_RS20135 PF00158 Sigma-54 interaction domain IH404_RS20145 PF02561 Flagellar protein FliS IH404_RS20150 PF07196 Flagellin hook IN motif IH404_RS20150 PF07195 Flagellar hook-associated protein 2 C-terminus IH404_RS20150 PF02465 Flagellar hook-associated protein 2 N-terminus IH404_RS20160 PF00669 Bacterial flagellin N-terminal helical region IH404_RS20160 PF00700 Bacterial flagellin C-terminal helical region IH404_RS20165 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IH404_RS20165 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IH404_RS20175 PF00460 Flagella basal body rod protein IH404_RS20175 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IH404_RS20180 PF10135 Rod binding protein IH404_RS20180 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase IH404_RS20185 PF02119 Flagellar P-ring protein IH404_RS20190 PF02107 Flagellar L-ring protein IH404_RS20195 PF00460 Flagella basal body rod protein IH404_RS20195 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IH404_RS20200 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IH404_RS20200 PF00460 Flagella basal body rod protein IH404_RS20210 PF00158 Sigma-54 interaction domain IH404_RS20210 PF18024 Helix-turn-helix domain IH404_RS20215 PF00351 Biopterin-dependent aromatic amino acid hydroxylase IH404_RS20220 PF01329 Pterin 4 alpha carbinolamine dehydratase IH404_RS20225 PF00155 Aminotransferase class I and II IH404_RS20235 PF12852 Cupin IH404_RS20235 PF12833 Helix-turn-helix domain IH404_RS20255 PF01734 Patatin-like phospholipase IH404_RS20260 PF01047 MarR family IH404_RS20265 PF00570 HRDC domain IH404_RS20265 PF09382 RQC domain IH404_RS20265 PF16124 RecQ zinc-binding IH404_RS20265 PF00271 Helicase conserved C-terminal domain IH404_RS20265 PF00270 DEAD/DEAH box helicase IH404_RS20275 PF04304 Protein of unknown function (DUF454) IH404_RS20280 PF00672 HAMP domain IH404_RS20280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS20280 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS20280 PF01627 Hpt domain IH404_RS20280 PF00072 Response regulator receiver domain IH404_RS20285 PF02646 RmuC family IH404_RS20315 PF00255 Glutathione peroxidase IH404_RS20325 PF01047 MarR family IH404_RS20330 PF02654 Cobalamin-5-phosphate synthase IH404_RS20335 PF00300 Histidine phosphatase superfamily (branch 1) IH404_RS20340 PF02277 Phosphoribosyltransferase IH404_RS20345 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase IH404_RS20350 PF07685 CobB/CobQ-like glutamine amidotransferase domain IH404_RS20350 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IH404_RS20355 PF00155 Aminotransferase class I and II IH404_RS20360 PF17113 Regulatory signalling modulator protein AmpE IH404_RS20360 PF03186 CobD/Cbib protein IH404_RS20365 PF00881 Nitroreductase family IH404_RS20370 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IH404_RS20370 PF07685 CobB/CobQ-like glutamine amidotransferase domain IH404_RS20375 PF12557 Cob(I)alamin adenosyltransferase N terminal IH404_RS20375 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP IH404_RS20380 PF07995 Glucose / Sorbosone dehydrogenase IH404_RS20385 PF00877 NlpC/P60 family IH404_RS20390 PF00877 NlpC/P60 family IH404_RS20395 PF00308 Bacterial dnaA protein IH404_RS20400 PF01594 AI-2E family transporter IH404_RS20410 PF00586 AIR synthase related protein, N-terminal domain IH404_RS20410 PF02769 AIR synthase related protein, C-terminal domain IH404_RS20415 PF00551 Formyl transferase IH404_RS20430 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) IH404_RS20435 PF03819 MazG nucleotide pyrophosphohydrolase domain IH404_RS20440 PF04607 Region found in RelA / SpoT proteins IH404_RS20440 PF02824 TGS domain IH404_RS20440 PF13291 ACT domain IH404_RS20445 PF05958 tRNA (Uracil-5-)-methyltransferase IH404_RS20445 PF01938 TRAM domain IH404_RS20450 PF00291 Pyridoxal-phosphate dependent enzyme IH404_RS20460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS20460 PF03466 LysR substrate binding domain IH404_RS20465 PF00491 Arginase family IH404_RS20470 PF00474 Sodium:solute symporter family IH404_RS20475 PF03466 LysR substrate binding domain IH404_RS20475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS20490 PF13509 S1 domain IH404_RS20490 PF17783 CvfB-like winged helix domain IH404_RS20520 PF00270 DEAD/DEAH box helicase IH404_RS20520 PF00271 Helicase conserved C-terminal domain IH404_RS20525 PF00924 Mechanosensitive ion channel IH404_RS20535 PF00106 short chain dehydrogenase IH404_RS20540 PF08659 KR domain IH404_RS20540 PF00550 Phosphopantetheine attachment site IH404_RS20540 PF00109 Beta-ketoacyl synthase, N-terminal domain IH404_RS20540 PF16197 Ketoacyl-synthetase C-terminal extension IH404_RS20540 PF14765 Polyketide synthase dehydratase IH404_RS20540 PF00698 Acyl transferase domain IH404_RS20540 PF08240 Alcohol dehydrogenase GroES-like domain IH404_RS20540 PF02801 Beta-ketoacyl synthase, C-terminal domain IH404_RS20545 PF00892 EamA-like transporter family IH404_RS20550 PF02525 Flavodoxin-like fold IH404_RS20565 PF00561 alpha/beta hydrolase fold IH404_RS20570 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD IH404_RS20575 PF00664 ABC transporter transmembrane region IH404_RS20575 PF00005 ABC transporter IH404_RS20580 PF00230 Major intrinsic protein IH404_RS20600 PF04542 Sigma-70 region 2 IH404_RS20600 PF08281 Sigma-70, region 4 IH404_RS20605 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IH404_RS20605 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IH404_RS20610 PF04408 Helicase associated domain (HA2) IH404_RS20610 PF00271 Helicase conserved C-terminal domain IH404_RS20610 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold IH404_RS20610 PF11898 Domain of unknown function (DUF3418) IH404_RS20610 PF00270 DEAD/DEAH box helicase IH404_RS20615 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) IH404_RS20635 PF08447 PAS fold IH404_RS20635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IH404_RS20655 PF00115 Cytochrome C and Quinol oxidase polypeptide I IH404_RS20670 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IH404_RS20670 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP IH404_RS20675 PF00115 Cytochrome C and Quinol oxidase polypeptide I IH404_RS20690 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP IH404_RS20690 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IH404_RS20700 PF12801 4Fe-4S binding domain IH404_RS20700 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase IH404_RS20700 PF13746 4Fe-4S dicluster domain IH404_RS20710 PF00403 Heavy-metal-associated domain IH404_RS20725 PF04055 Radical SAM superfamily IH404_RS20725 PF06969 HemN C-terminal domain IH404_RS20735 PF13545 Crp-like helix-turn-helix domain IH404_RS20735 PF00027 Cyclic nucleotide-binding domain IH404_RS20740 PF00156 Phosphoribosyl transferase domain IH404_RS20745 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IH404_RS20745 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IH404_RS20745 PF02770 Acyl-CoA dehydrogenase, middle domain IH404_RS20750 PF13662 Toprim domain IH404_RS20750 PF02132 RecR protein IH404_RS20755 PF16884 N-terminal domain of oxidoreductase IH404_RS20755 PF00107 Zinc-binding dehydrogenase IH404_RS20760 PF02575 YbaB/EbfC DNA-binding family IH404_RS20765 PF12170 DNA polymerase III tau subunit V interacting with alpha IH404_RS20765 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding IH404_RS20765 PF12169 DNA polymerase III subunits gamma and tau domain III IH404_RS20770 PF00892 EamA-like transporter family IH404_RS20775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS20775 PF03466 LysR substrate binding domain IH404_RS20800 PF10005 zinc-ribbon domain IH404_RS20800 PF15887 Putative zinc-binding metallo-peptidase IH404_RS20805 PF12826 Helix-hairpin-helix motif IH404_RS20805 PF01653 NAD-dependent DNA ligase adenylation domain IH404_RS20805 PF03119 NAD-dependent DNA ligase C4 zinc finger domain IH404_RS20805 PF00533 BRCA1 C Terminus (BRCT) domain IH404_RS20805 PF03120 NAD-dependent DNA ligase OB-fold domain IH404_RS20810 PF04354 ZipA, C-terminal FtsZ-binding domain IH404_RS20815 PF02463 RecF/RecN/SMC N terminal domain IH404_RS20825 PF00111 2Fe-2S iron-sulfur cluster binding domain IH404_RS20825 PF01799 [2Fe-2S] binding domain IH404_RS20830 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain IH404_RS20830 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase IH404_RS20840 PF01979 Amidohydrolase family IH404_RS20845 PF07729 FCD domain IH404_RS20845 PF00392 Bacterial regulatory proteins, gntR family IH404_RS20850 PF03594 Benzoate membrane transport protein IH404_RS20855 PF04320 Protein with unknown function (DUF469) IH404_RS20860 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family IH404_RS20865 PF00990 Diguanylate cyclase, GGDEF domain IH404_RS20870 PF01170 Putative RNA methylase family UPF0020 IH404_RS20870 PF10672 S-adenosylmethionine-dependent methyltransferase IH404_RS20870 PF02926 THUMP domain IH404_RS20875 PF04957 Ribosome modulation factor IH404_RS20880 PF01180 Dihydroorotate dehydrogenase IH404_RS20885 PF01464 Transglycosylase SLT domain IH404_RS20890 PF00486 Transcriptional regulatory protein, C terminal IH404_RS20895 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IH404_RS20900 PF03958 Bacterial type II/III secretion system short domain IH404_RS20900 PF00263 Bacterial type II and III secretion system protein IH404_RS20905 PF00005 ABC transporter IH404_RS20910 PF08376 Nitrate and nitrite sensing IH404_RS20910 PF03861 ANTAR domain IH404_RS20915 PF07690 Major Facilitator Superfamily IH404_RS20920 PF13191 AAA ATPase domain IH404_RS20920 PF00069 Protein kinase domain IH404_RS20925 PF07992 Pyridine nucleotide-disulphide oxidoreductase IH404_RS20925 PF18267 Rubredoxin NAD+ reductase C-terminal domain IH404_RS20925 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IH404_RS20925 PF04324 BFD-like [2Fe-2S] binding domain IH404_RS20925 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IH404_RS20930 PF00355 Rieske [2Fe-2S] domain IH404_RS20935 PF01568 Molydopterin dinucleotide binding domain IH404_RS20935 PF04324 BFD-like [2Fe-2S] binding domain IH404_RS20935 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IH404_RS20935 PF00384 Molybdopterin oxidoreductase IH404_RS20940 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IH404_RS20945 PF00691 OmpA family IH404_RS20945 PF05736 OprF membrane domain IH404_RS20965 PF01544 CorA-like Mg2+ transporter protein IH404_RS20970 PF03737 Aldolase/RraA IH404_RS20980 PF00391 PEP-utilising enzyme, mobile domain IH404_RS20980 PF02896 PEP-utilising enzyme, TIM barrel domain IH404_RS20980 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain IH404_RS20985 PF03618 Kinase/pyrophosphorylase IH404_RS20990 PF00155 Aminotransferase class I and II IH404_RS20990 PF00392 Bacterial regulatory proteins, gntR family IH404_RS20995 PF00892 EamA-like transporter family IH404_RS21000 PF00581 Rhodanese-like domain IH404_RS21000 PF00899 ThiF family IH404_RS21005 PF00291 Pyridoxal-phosphate dependent enzyme IH404_RS21010 PF00132 Bacterial transferase hexapeptide (six repeats) IH404_RS21015 PF01411 tRNA synthetases class II (A) IH404_RS21015 PF02272 DHHA1 domain IH404_RS21015 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IH404_RS21020 PF03972 MmgE/PrpD family IH404_RS21025 PF04303 PrpF protein IH404_RS21030 PF00330 Aconitase family (aconitate hydratase) IH404_RS21030 PF00694 Aconitase C-terminal domain IH404_RS21035 PF00285 Citrate synthase, C-terminal domain IH404_RS21045 PF07729 FCD domain IH404_RS21045 PF00392 Bacterial regulatory proteins, gntR family IH404_RS21050 PF08443 RimK-like ATP-grasp domain IH404_RS21050 PF18030 RimK PreATP-grasp domain IH404_RS21060 PF08443 RimK-like ATP-grasp domain IH404_RS21060 PF18030 RimK PreATP-grasp domain IH404_RS21065 PF00425 chorismate binding enzyme IH404_RS21065 PF04715 Anthranilate synthase component I, N terminal region IH404_RS21075 PF01507 Phosphoadenosine phosphosulfate reductase family IH404_RS21080 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin IH404_RS21085 PF01177 Asp/Glu/Hydantoin racemase IH404_RS21090 PF03466 LysR substrate binding domain IH404_RS21090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS21100 PF13419 Haloacid dehalogenase-like hydrolase IH404_RS21135 PF01553 Acyltransferase IH404_RS21140 PF01544 CorA-like Mg2+ transporter protein IH404_RS21145 PF00117 Glutamine amidotransferase class-I IH404_RS21145 PF00958 GMP synthase C terminal domain IH404_RS21145 PF02540 NAD synthase IH404_RS21150 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IH404_RS21150 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IH404_RS21150 PF00378 Enoyl-CoA hydratase/isomerase IH404_RS21155 PF02803 Thiolase, C-terminal domain IH404_RS21155 PF00108 Thiolase, N-terminal domain IH404_RS21170 PF04168 A predicted alpha-helical domain with a conserved ER motif. IH404_RS21170 PF14403 Circularly permuted ATP-grasp type 2 IH404_RS21175 PF14403 Circularly permuted ATP-grasp type 2 IH404_RS21190 PF01852 START domain IH404_RS21195 PF03692 Putative zinc- or iron-chelating domain IH404_RS21205 PF00392 Bacterial regulatory proteins, gntR family IH404_RS21205 PF00155 Aminotransferase class I and II IH404_RS21210 PF00691 OmpA family IH404_RS21210 PF13488 Glycine zipper IH404_RS21225 PF01012 Electron transfer flavoprotein domain IH404_RS21225 PF00766 Electron transfer flavoprotein FAD-binding domain IH404_RS21230 PF01012 Electron transfer flavoprotein domain IH404_RS21245 PF06719 AraC-type transcriptional regulator N-terminus IH404_RS21245 PF12833 Helix-turn-helix domain IH404_RS21250 PF08240 Alcohol dehydrogenase GroES-like domain IH404_RS21250 PF00107 Zinc-binding dehydrogenase IH404_RS21255 PF09339 IclR helix-turn-helix domain IH404_RS21255 PF01614 Bacterial transcriptional regulator IH404_RS21260 PF02653 Branched-chain amino acid transport system / permease component IH404_RS21265 PF00005 ABC transporter IH404_RS21270 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family IH404_RS21300 PF00294 pfkB family carbohydrate kinase IH404_RS21310 PF03747 ADP-ribosylglycohydrolase IH404_RS21315 PF00392 Bacterial regulatory proteins, gntR family IH404_RS21315 PF07702 UTRA domain IH404_RS21330 PF06463 Molybdenum Cofactor Synthesis C IH404_RS21330 PF04055 Radical SAM superfamily IH404_RS21335 PF00440 Bacterial regulatory proteins, tetR family IH404_RS21340 PF01026 TatD related DNase IH404_RS21345 PF09115 DNA polymerase III, delta subunit, C terminal IH404_RS21350 PF02223 Thymidylate kinase IH404_RS21355 PF02618 YceG-like family IH404_RS21360 PF01063 Amino-transferase class IV IH404_RS21365 PF02801 Beta-ketoacyl synthase, C-terminal domain IH404_RS21365 PF00109 Beta-ketoacyl synthase, N-terminal domain IH404_RS21370 PF00550 Phosphopantetheine attachment site IH404_RS21380 PF00698 Acyl transferase domain IH404_RS21385 PF02504 Fatty acid synthesis protein IH404_RS21390 PF01783 Ribosomal L32p protein family IH404_RS21395 PF02620 Large ribosomal RNA subunit accumulation protein YceD IH404_RS21400 PF02545 Maf-like protein IH404_RS21405 PF01343 Peptidase family S49 IH404_RS21405 PF06965 Na+/H+ antiporter 1 IH404_RS21410 PF13419 Haloacid dehalogenase-like hydrolase IH404_RS21415 PF00849 RNA pseudouridylate synthase IH404_RS21415 PF01479 S4 domain IH404_RS21420 PF12111 Polyribonucleotide phosphorylase C terminal IH404_RS21420 PF10150 Ribonuclease E/G family IH404_RS21420 PF00575 S1 RNA binding domain IH404_RS21425 PF00132 Bacterial transferase hexapeptide (six repeats) IH404_RS21425 PF12804 MobA-like NTP transferase domain IH404_RS21430 PF13478 XdhC Rossmann domain IH404_RS21430 PF02625 XdhC and CoxI family IH404_RS21435 PF00375 Sodium:dicarboxylate symporter family IH404_RS21440 PF12833 Helix-turn-helix domain IH404_RS21440 PF02311 AraC-like ligand binding domain IH404_RS21445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS21450 PF00072 Response regulator receiver domain IH404_RS21450 PF00486 Transcriptional regulatory protein, C terminal IH404_RS21460 PF17837 4'-phosphopantetheinyl transferase N-terminal domain IH404_RS21460 PF01648 4'-phosphopantetheinyl transferase superfamily IH404_RS21465 PF00672 HAMP domain IH404_RS21465 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS21465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS21470 PF00486 Transcriptional regulatory protein, C terminal IH404_RS21470 PF00072 Response regulator receiver domain IH404_RS21475 PF03477 ATP cone domain IH404_RS21475 PF02867 Ribonucleotide reductase, barrel domain IH404_RS21475 PF00317 Ribonucleotide reductase, all-alpha domain IH404_RS21485 PF00460 Flagella basal body rod protein IH404_RS21485 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IH404_RS21485 PF07559 Flagellar basal body protein FlaE IH404_RS21490 PF03963 Flagellar hook capping protein - N-terminal region IH404_RS21490 PF13861 FlgD Tudor-like domain IH404_RS21490 PF13860 FlgD Ig-like domain IH404_RS21495 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IH404_RS21495 PF00460 Flagella basal body rod protein IH404_RS21500 PF00460 Flagella basal body rod protein IH404_RS21505 PF01739 CheR methyltransferase, SAM binding domain IH404_RS21505 PF03705 CheR methyltransferase, all-alpha domain IH404_RS21510 PF00072 Response regulator receiver domain IH404_RS21510 PF01584 CheW-like domain IH404_RS21530 PF07317 Flagellar regulator YcgR IH404_RS21530 PF07238 PilZ domain IH404_RS21535 PF07690 Major Facilitator Superfamily IH404_RS21575 PF03869 Arc-like DNA binding domain IH404_RS21580 PF00571 CBS domain IH404_RS21580 PF01769 Divalent cation transporter IH404_RS21580 PF03448 MgtE intracellular N domain IH404_RS21600 PF02599 Global regulator protein family IH404_RS21605 PF01842 ACT domain IH404_RS21605 PF13840 ACT domain IH404_RS21605 PF00696 Amino acid kinase family IH404_RS21610 PF01411 tRNA synthetases class II (A) IH404_RS21610 PF02272 DHHA1 domain IH404_RS21610 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IH404_RS21615 PF01212 Beta-eliminating lyase IH404_RS21620 PF00885 6,7-dimethyl-8-ribityllumazine synthase IH404_RS21630 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family IH404_RS21640 PF04996 Succinylarginine dihydrolase IH404_RS21645 PF00171 Aldehyde dehydrogenase family IH404_RS21650 PF04958 Arginine N-succinyltransferase beta subunit IH404_RS21655 PF04958 Arginine N-succinyltransferase beta subunit IH404_RS21660 PF00202 Aminotransferase class-III IH404_RS21675 PF12833 Helix-turn-helix domain IH404_RS21680 PF00005 ABC transporter IH404_RS21690 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS21695 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS21700 PF00497 Bacterial extracellular solute-binding proteins, family 3 IH404_RS21705 PF13193 AMP-binding enzyme C-terminal domain IH404_RS21705 PF00501 AMP-binding enzyme IH404_RS21705 PF16177 Acetyl-coenzyme A synthetase N-terminus IH404_RS21715 PF00268 Ribonucleotide reductase, small chain IH404_RS21745 PF01425 Amidase IH404_RS21755 PF12706 Beta-lactamase superfamily domain IH404_RS21770 PF13426 PAS domain IH404_RS21770 PF08447 PAS fold IH404_RS21770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IH404_RS21785 PF00117 Glutamine amidotransferase class-I IH404_RS21785 PF06418 CTP synthase N-terminus IH404_RS21790 PF03992 Antibiotic biosynthesis monooxygenase IH404_RS21800 PF03009 Glycerophosphoryl diester phosphodiesterase family IH404_RS21815 PF01384 Phosphate transporter family IH404_RS21820 PF02626 Carboxyltransferase domain, subdomain A and B IH404_RS21830 PF03746 LamB/YcsF family IH404_RS21835 PF03466 LysR substrate binding domain IH404_RS21835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS21840 PF03466 LysR substrate binding domain IH404_RS21840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS21855 PF03466 LysR substrate binding domain IH404_RS21855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS21860 PF08281 Sigma-70, region 4 IH404_RS21860 PF04542 Sigma-70 region 2 IH404_RS21865 PF03795 YCII-related domain IH404_RS21885 PF00155 Aminotransferase class I and II IH404_RS21890 PF02447 GntP family permease IH404_RS21900 PF00356 Bacterial regulatory proteins, lacI family IH404_RS21900 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family IH404_RS21915 PF01370 NAD dependent epimerase/dehydratase family IH404_RS21920 PF00083 Sugar (and other) transporter IH404_RS21935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IH404_RS21935 PF13426 PAS domain IH404_RS21935 PF08447 PAS fold IH404_RS21940 PF09084 NMT1/THI5 like IH404_RS21965 PF01327 Polypeptide deformylase IH404_RS21970 PF03631 Virulence factor BrkB IH404_RS21985 PF07690 Major Facilitator Superfamily IH404_RS21990 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IH404_RS21990 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IH404_RS21990 PF00205 Thiamine pyrophosphate enzyme, central domain IH404_RS22000 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IH404_RS22005 PF00106 short chain dehydrogenase IH404_RS22010 PF00501 AMP-binding enzyme IH404_RS22010 PF13193 AMP-binding enzyme C-terminal domain IH404_RS22015 PF13193 AMP-binding enzyme C-terminal domain IH404_RS22015 PF00501 AMP-binding enzyme IH404_RS22025 PF01575 MaoC like domain IH404_RS22035 PF12843 Putative quorum-sensing-regulated virulence factor IH404_RS22040 PF00266 Aminotransferase class-V IH404_RS22045 PF01081 KDPG and KHG aldolase IH404_RS22050 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase IH404_RS22055 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain IH404_RS22055 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain IH404_RS22060 PF01380 SIS domain IH404_RS22060 PF01418 Helix-turn-helix domain, rpiR family IH404_RS22065 PF01263 Aldose 1-epimerase IH404_RS22070 PF04966 Carbohydrate-selective porin, OprB family IH404_RS22075 PF08402 TOBE domain IH404_RS22075 PF00005 ABC transporter IH404_RS22080 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS22085 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS22090 PF01547 Bacterial extracellular solute-binding protein IH404_RS22105 PF01370 NAD dependent epimerase/dehydratase family IH404_RS22110 PF03466 LysR substrate binding domain IH404_RS22110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS22115 PF01810 LysE type translocator IH404_RS22120 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain IH404_RS22120 PF02777 Iron/manganese superoxide dismutases, C-terminal domain IH404_RS22130 PF03707 Bacterial signalling protein N terminal repeat IH404_RS22130 PF00563 EAL domain IH404_RS22130 PF00990 Diguanylate cyclase, GGDEF domain IH404_RS22140 PF02386 Cation transport protein IH404_RS22145 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term IH404_RS22145 PF12833 Helix-turn-helix domain IH404_RS22160 PF07690 Major Facilitator Superfamily IH404_RS22165 PF00472 RF-1 domain IH404_RS22170 PF00324 Amino acid permease IH404_RS22185 PF01479 S4 domain IH404_RS22185 PF00849 RNA pseudouridylate synthase IH404_RS22195 PF04079 Segregation and condensation complex subunit ScpB IH404_RS22200 PF02616 Segregation and condensation protein ScpA IH404_RS22205 PF01300 Telomere recombination IH404_RS22210 PF02811 PHP domain IH404_RS22215 PF04279 Intracellular septation protein A IH404_RS22220 PF03795 YCII-related domain IH404_RS22225 PF00072 Response regulator receiver domain IH404_RS22225 PF00486 Transcriptional regulatory protein, C terminal IH404_RS22235 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS22235 PF08521 Two-component sensor kinase N-terminal IH404_RS22235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS22240 PF02515 CoA-transferase family III IH404_RS22245 PF02805 Metal binding domain of Ada IH404_RS22245 PF12833 Helix-turn-helix domain IH404_RS22245 PF06029 AlkA N-terminal domain IH404_RS22245 PF00730 HhH-GPD superfamily base excision DNA repair protein IH404_RS22250 PF13520 Amino acid permease IH404_RS22255 PF13520 Amino acid permease IH404_RS22265 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IH404_RS22265 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IH404_RS22270 PF00696 Amino acid kinase family IH404_RS22280 PF18024 Helix-turn-helix domain IH404_RS22280 PF00158 Sigma-54 interaction domain IH404_RS22285 PF01597 Glycine cleavage H-protein IH404_RS22290 PF02347 Glycine cleavage system P-protein IH404_RS22295 PF03315 Serine dehydratase beta chain IH404_RS22295 PF03313 Serine dehydratase alpha chain IH404_RS22300 PF08669 Glycine cleavage T-protein C-terminal barrel domain IH404_RS22300 PF01571 Aminomethyltransferase folate-binding domain IH404_RS22305 PF00313 'Cold-shock' DNA-binding domain IH404_RS22315 PF02445 Quinolinate synthetase A protein IH404_RS22320 PF17287 POTRA domain IH404_RS22320 PF08479 POTRA domain, ShlB-type IH404_RS22320 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB IH404_RS22325 PF05860 haemagglutination activity domain IH404_RS22325 PF13332 Hemagglutinin repeat IH404_RS22335 PF07690 Major Facilitator Superfamily IH404_RS22340 PF13533 Biotin-lipoyl like IH404_RS22345 PF02321 Outer membrane efflux protein IH404_RS22350 PF01024 Colicin pore forming domain IH404_RS22370 PF12833 Helix-turn-helix domain IH404_RS22370 PF02311 AraC-like ligand binding domain IH404_RS22440 PF04829 Pre-toxin domain with VENN motif IH404_RS22440 PF13332 Hemagglutinin repeat IH404_RS22440 PF05594 Haemagluttinin repeat IH404_RS22450 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family IH404_RS22460 PF17287 POTRA domain IH404_RS22460 PF08479 POTRA domain, ShlB-type IH404_RS22460 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB IH404_RS22470 PF04055 Radical SAM superfamily IH404_RS22475 PF16331 TolA binding protein trimerisation IH404_RS22475 PF13525 Outer membrane lipoprotein IH404_RS22480 PF00691 OmpA family IH404_RS22485 PF07676 WD40-like Beta Propeller Repeat IH404_RS22485 PF04052 TolB amino-terminal domain IH404_RS22495 PF02472 Biopolymer transport protein ExbD/TolR IH404_RS22500 PF01618 MotA/TolQ/ExbB proton channel family IH404_RS22505 PF03061 Thioesterase superfamily IH404_RS22510 PF05496 Holliday junction DNA helicase RuvB P-loop domain IH404_RS22510 PF17864 RuvB AAA lid domain IH404_RS22510 PF05491 RuvB C-terminal winged helix domain IH404_RS22515 PF07499 RuvA, C-terminal domain IH404_RS22515 PF01330 RuvA N terminal domain IH404_RS22520 PF02075 Crossover junction endodeoxyribonuclease RuvC IH404_RS22525 PF01709 Transcriptional regulator IH404_RS22530 PF00152 tRNA synthetases class II (D, K and N) IH404_RS22530 PF02938 GAD domain IH404_RS22530 PF01336 OB-fold nucleic acid binding domain IH404_RS22545 PF00210 Ferritin-like domain IH404_RS22550 PF00313 'Cold-shock' DNA-binding domain IH404_RS22555 PF04102 SlyX IH404_RS22565 PF03573 outer membrane porin, OprD family IH404_RS22570 PF00924 Mechanosensitive ion channel IH404_RS22570 PF05552 Conserved TM helix IH404_RS22575 PF04461 Protein of unknown function (DUF520) IH404_RS22580 PF02558 Ketopantoate reductase PanE/ApbA IH404_RS22580 PF08546 Ketopantoate reductase PanE/ApbA C terminal IH404_RS22585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS22585 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS22585 PF00497 Bacterial extracellular solute-binding proteins, family 3 IH404_RS22590 PF01923 Cobalamin adenosyltransferase IH404_RS22595 PF00293 NUDIX domain IH404_RS22600 PF01960 ArgJ family IH404_RS22605 PF02810 SEC-C motif IH404_RS22605 PF07517 SecA DEAD-like domain IH404_RS22605 PF01043 SecA preprotein cross-linking domain IH404_RS22605 PF07516 SecA Wing and Scaffold domain IH404_RS22615 PF05872 Bacterial protein of unknown function (DUF853) IH404_RS22620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IH404_RS22620 PF02743 Cache domain IH404_RS22620 PF00672 HAMP domain IH404_RS22625 PF00534 Glycosyl transferases group 1 IH404_RS22625 PF13439 Glycosyltransferase Family 4 IH404_RS22640 PF01842 ACT domain IH404_RS22640 PF00551 Formyl transferase IH404_RS22650 PF08411 Exonuclease C-terminal IH404_RS22650 PF00929 Exonuclease IH404_RS22675 PF07726 ATPase family associated with various cellular activities (AAA) IH404_RS22675 PF17863 AAA lid domain IH404_RS22695 PF00224 Pyruvate kinase, barrel domain IH404_RS22695 PF02887 Pyruvate kinase, alpha/beta domain IH404_RS22700 PF00111 2Fe-2S iron-sulfur cluster binding domain IH404_RS22705 PF05683 Fumarase C-terminus IH404_RS22705 PF05681 Fumarate hydratase (Fumerase) IH404_RS22710 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS22710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS22715 PF02954 Bacterial regulatory protein, Fis family IH404_RS22715 PF00158 Sigma-54 interaction domain IH404_RS22715 PF00072 Response regulator receiver domain IH404_RS22720 PF00083 Sugar (and other) transporter IH404_RS22740 PF06719 AraC-type transcriptional regulator N-terminus IH404_RS22740 PF12833 Helix-turn-helix domain IH404_RS22745 PF00672 HAMP domain IH404_RS22745 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS22745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS22750 PF00486 Transcriptional regulatory protein, C terminal IH404_RS22750 PF00072 Response regulator receiver domain IH404_RS22755 PF02685 Glucokinase IH404_RS22760 PF00920 Dehydratase family IH404_RS22765 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IH404_RS22765 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IH404_RS22770 PF08281 Sigma-70, region 4 IH404_RS22770 PF04542 Sigma-70 region 2 IH404_RS22775 PF04773 FecR protein IH404_RS22775 PF16220 Domain of unknown function (DUF4880) IH404_RS22780 PF00593 TonB dependent receptor IH404_RS22780 PF07715 TonB-dependent Receptor Plug Domain IH404_RS22785 PF01126 Heme oxygenase IH404_RS22790 PF04304 Protein of unknown function (DUF454) IH404_RS22795 PF00672 HAMP domain IH404_RS22795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IH404_RS22835 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS22835 PF00672 HAMP domain IH404_RS22835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS22840 PF00072 Response regulator receiver domain IH404_RS22840 PF00486 Transcriptional regulatory protein, C terminal IH404_RS22845 PF00884 Sulfatase IH404_RS22855 PF00118 TCP-1/cpn60 chaperonin family IH404_RS22860 PF00166 Chaperonin 10 Kd subunit IH404_RS22865 PF04186 FxsA cytoplasmic membrane protein IH404_RS22885 PF07690 Major Facilitator Superfamily IH404_RS22890 PF03129 Anticodon binding domain IH404_RS22890 PF04073 Aminoacyl-tRNA editing domain IH404_RS22890 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IH404_RS22900 PF00817 impB/mucB/samB family IH404_RS22900 PF11798 IMS family HHH motif IH404_RS22915 PF03706 Lysylphosphatidylglycerol synthase TM region IH404_RS22915 PF09924 Uncharacterised conserved protein (DUF2156) IH404_RS22925 PF02272 DHHA1 domain IH404_RS22925 PF01368 DHH family IH404_RS22925 PF17768 RecJ OB domain IH404_RS22930 PF07152 YaeQ protein IH404_RS22935 PF02515 CoA-transferase family III IH404_RS22945 PF00196 Bacterial regulatory proteins, luxR family IH404_RS22945 PF00072 Response regulator receiver domain IH404_RS22950 PF00072 Response regulator receiver domain IH404_RS22955 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS22955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS22955 PF01627 Hpt domain IH404_RS22955 PF00989 PAS fold IH404_RS22955 PF00072 Response regulator receiver domain IH404_RS22955 PF00497 Bacterial extracellular solute-binding proteins, family 3 IH404_RS22960 PF14821 Threonine synthase N terminus IH404_RS22960 PF00291 Pyridoxal-phosphate dependent enzyme IH404_RS22965 PF03447 Homoserine dehydrogenase, NAD binding domain IH404_RS22965 PF01842 ACT domain IH404_RS22965 PF00742 Homoserine dehydrogenase IH404_RS22970 PF13098 Thioredoxin-like domain IH404_RS22970 PF10411 Disulfide bond isomerase protein N-terminus IH404_RS22975 PF00589 Phage integrase family IH404_RS22975 PF02899 Phage integrase, N-terminal SAM-like domain IH404_RS22980 PF03471 Transporter associated domain IH404_RS22980 PF00999 Sodium/hydrogen exchanger family IH404_RS22980 PF02080 TrkA-C domain IH404_RS22985 PF03061 Thioesterase superfamily IH404_RS22990 PF01245 Ribosomal protein L19 IH404_RS22995 PF01746 tRNA (Guanine-1)-methyltransferase IH404_RS23000 PF01782 RimM N-terminal domain IH404_RS23000 PF05239 PRC-barrel domain IH404_RS23005 PF00886 Ribosomal protein S16 IH404_RS23010 PF00448 SRP54-type protein, GTPase domain IH404_RS23010 PF02881 SRP54-type protein, helical bundle domain IH404_RS23010 PF02978 Signal peptide binding domain IH404_RS23020 PF03471 Transporter associated domain IH404_RS23020 PF01595 Cyclin M transmembrane N-terminal domain IH404_RS23020 PF00571 CBS domain IH404_RS23025 PF00083 Sugar (and other) transporter IH404_RS23025 PF07690 Major Facilitator Superfamily IH404_RS23030 PF02222 ATP-grasp domain IH404_RS23045 PF00132 Bacterial transferase hexapeptide (six repeats) IH404_RS23050 PF00293 NUDIX domain IH404_RS23055 PF00293 NUDIX domain IH404_RS23055 PF09297 NADH pyrophosphatase zinc ribbon domain IH404_RS23065 PF00392 Bacterial regulatory proteins, gntR family IH404_RS23065 PF07702 UTRA domain IH404_RS23070 PF01979 Amidohydrolase family IH404_RS23075 PF01380 SIS domain IH404_RS23080 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IH404_RS23080 PF00381 PTS HPr component phosphorylation site IH404_RS23080 PF02896 PEP-utilising enzyme, TIM barrel domain IH404_RS23080 PF00391 PEP-utilising enzyme, mobile domain IH404_RS23080 PF05524 PEP-utilising enzyme, N-terminal IH404_RS23085 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 IH404_RS23085 PF02378 Phosphotransferase system, EIIC IH404_RS23085 PF00367 phosphotransferase system, EIIB IH404_RS23105 PF01784 NIF3 (NGG1p interacting factor 3) IH404_RS23110 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal IH404_RS23110 PF02769 AIR synthase related protein, C-terminal domain IH404_RS23110 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain IH404_RS23115 PF01464 Transglycosylase SLT domain IH404_RS23115 PF00497 Bacterial extracellular solute-binding proteins, family 3 IH404_RS23125 PF02896 PEP-utilising enzyme, TIM barrel domain IH404_RS23125 PF00381 PTS HPr component phosphorylation site IH404_RS23125 PF05524 PEP-utilising enzyme, N-terminal IH404_RS23125 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IH404_RS23125 PF00391 PEP-utilising enzyme, mobile domain IH404_RS23130 PF02264 LamB porin IH404_RS23135 PF16657 Maltogenic Amylase, C-terminal domain IH404_RS23135 PF00128 Alpha amylase, catalytic domain IH404_RS23140 PF02378 Phosphotransferase system, EIIC IH404_RS23140 PF00367 phosphotransferase system, EIIB IH404_RS23145 PF00392 Bacterial regulatory proteins, gntR family IH404_RS23145 PF07702 UTRA domain IH404_RS23150 PF02540 NAD synthase IH404_RS23150 PF00117 Glutamine amidotransferase class-I IH404_RS23150 PF00958 GMP synthase C terminal domain IH404_RS23155 PF00478 IMP dehydrogenase / GMP reductase domain IH404_RS23155 PF00571 CBS domain IH404_RS23170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS23170 PF03466 LysR substrate binding domain IH404_RS23175 PF13742 OB-fold nucleic acid binding domain IH404_RS23175 PF02601 Exonuclease VII, large subunit IH404_RS23180 PF01476 LysM domain IH404_RS23180 PF08525 Opacity-associated protein A N-terminal motif IH404_RS23180 PF01551 Peptidase family M23 IH404_RS23195 PF00682 HMGL-like IH404_RS23195 PF08502 LeuA allosteric (dimerisation) domain IH404_RS23200 PF00795 Carbon-nitrogen hydrolase IH404_RS23205 PF00155 Aminotransferase class I and II IH404_RS23210 PF01926 50S ribosome-binding GTPase IH404_RS23210 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal IH404_RS23215 PF13360 PQQ-like domain IH404_RS23225 PF03129 Anticodon binding domain IH404_RS23225 PF13393 Histidyl-tRNA synthetase IH404_RS23230 PF04551 GcpE protein IH404_RS23235 PF13464 Domain of unknown function (DUF4115) IH404_RS23245 PF04055 Radical SAM superfamily IH404_RS23250 PF00334 Nucleoside diphosphate kinase IH404_RS23260 PF00111 2Fe-2S iron-sulfur cluster binding domain IH404_RS23265 PF00012 Hsp70 protein IH404_RS23270 PF07743 HSCB C-terminal oligomerisation domain IH404_RS23270 PF00226 DnaJ domain IH404_RS23275 PF01521 Iron-sulphur cluster biosynthesis IH404_RS23280 PF01592 NifU-like N terminal domain IH404_RS23285 PF00266 Aminotransferase class-V IH404_RS23290 PF02082 Transcriptional regulator IH404_RS23295 PF00132 Bacterial transferase hexapeptide (six repeats) IH404_RS23295 PF06426 Serine acetyltransferase, N-terminal IH404_RS23300 PF00588 SpoU rRNA Methylase family IH404_RS23305 PF00459 Inositol monophosphatase family IH404_RS23310 PF05433 Glycine zipper 2TM domain IH404_RS23315 PF07549 SecD/SecF GG Motif IH404_RS23315 PF02355 Protein export membrane protein IH404_RS23320 PF13721 SecD export protein N-terminal TM region IH404_RS23320 PF02355 Protein export membrane protein IH404_RS23320 PF07549 SecD/SecF GG Motif IH404_RS23325 PF02699 Preprotein translocase subunit IH404_RS23330 PF01702 Queuine tRNA-ribosyltransferase IH404_RS23335 PF02547 Queuosine biosynthesis protein IH404_RS23350 PF01810 LysE type translocator IH404_RS23365 PF01810 LysE type translocator IH404_RS23370 PF08000 Bacterial PH domain IH404_RS23375 PF03515 Colicin-like bacteriocin tRNase domain IH404_RS23375 PF09000 Cytotoxic IH404_RS23375 PF11570 Coiled-coil receptor-binding R-domain of colicin E2 IH404_RS23380 PF03513 Cloacin immunity protein IH404_RS23385 PF00034 Cytochrome c IH404_RS23405 PF00360 Phytochrome region IH404_RS23405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS23405 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS23405 PF01590 GAF domain IH404_RS23405 PF08446 PAS fold IH404_RS23420 PF00990 Diguanylate cyclase, GGDEF domain IH404_RS23425 PF00202 Aminotransferase class-III IH404_RS23435 PF00155 Aminotransferase class I and II IH404_RS23450 PF06508 Queuosine biosynthesis protein QueC IH404_RS23455 PF01040 UbiA prenyltransferase family IH404_RS23460 PF03626 Prokaryotic Cytochrome C oxidase subunit IV IH404_RS23465 PF00510 Cytochrome c oxidase subunit III IH404_RS23470 PF00115 Cytochrome C and Quinol oxidase polypeptide I IH404_RS23475 PF06481 COX Aromatic Rich Motif IH404_RS23475 PF00116 Cytochrome C oxidase subunit II, periplasmic domain IH404_RS23480 PF02600 Disulfide bond formation protein DsbB IH404_RS23485 PF00175 Oxidoreductase NAD-binding domain IH404_RS23485 PF00042 Globin IH404_RS23485 PF00970 Oxidoreductase FAD-binding domain IH404_RS23490 PF01590 GAF domain IH404_RS23490 PF00158 Sigma-54 interaction domain IH404_RS23500 PF12833 Helix-turn-helix domain IH404_RS23500 PF06445 GyrI-like small molecule binding domain IH404_RS23505 PF00106 short chain dehydrogenase IH404_RS23510 PF00561 alpha/beta hydrolase fold IH404_RS23515 PF00596 Class II Aldolase and Adducin N-terminal domain IH404_RS23520 PF00258 Flavodoxin IH404_RS23525 PF13426 PAS domain IH404_RS23525 PF01740 STAS domain IH404_RS23535 PF13411 MerR HTH family regulatory protein IH404_RS23550 PF01227 GTP cyclohydrolase I IH404_RS23555 PF02152 Dihydroneopterin aldolase IH404_RS23570 PF07992 Pyridine nucleotide-disulphide oxidoreductase IH404_RS23580 PF13439 Glycosyltransferase Family 4 IH404_RS23580 PF00534 Glycosyl transferases group 1 IH404_RS23590 PF07992 Pyridine nucleotide-disulphide oxidoreductase IH404_RS23590 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IH404_RS23595 PF00255 Glutathione peroxidase IH404_RS23600 PF05981 CreA protein IH404_RS23605 PF01472 PUA domain IH404_RS23605 PF00696 Amino acid kinase family IH404_RS23610 PF01018 GTP1/OBG IH404_RS23610 PF01926 50S ribosome-binding GTPase IH404_RS23615 PF01016 Ribosomal L27 protein IH404_RS23620 PF00829 Ribosomal prokaryotic L21 protein IH404_RS23625 PF00348 Polyprenyl synthetase IH404_RS23630 PF08274 PhnA Zinc-Ribbon IH404_RS23630 PF03831 PhnA domain IH404_RS23635 PF00132 Bacterial transferase hexapeptide (six repeats) IH404_RS23635 PF12804 MobA-like NTP transferase domain IH404_RS23640 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase IH404_RS23640 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IH404_RS23645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IH404_RS23645 PF16591 Helical bimodular sensor domain IH404_RS23645 PF00672 HAMP domain IH404_RS23655 PF07969 Amidohydrolase family IH404_RS23660 PF01380 SIS domain IH404_RS23660 PF01418 Helix-turn-helix domain, rpiR family IH404_RS23665 PF02447 GntP family permease IH404_RS23675 PF01740 STAS domain IH404_RS23675 PF00916 Sulfate permease family IH404_RS23685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS23685 PF03466 LysR substrate binding domain IH404_RS23695 PF03466 LysR substrate binding domain IH404_RS23695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS23700 PF00324 Amino acid permease IH404_RS23705 PF00266 Aminotransferase class-V IH404_RS23710 PF01037 Lrp/AsnC ligand binding domain IH404_RS23715 PF00775 Dioxygenase IH404_RS23715 PF04444 Catechol dioxygenase N terminus IH404_RS23720 PF02426 Muconolactone delta-isomerase IH404_RS23725 PF13378 Enolase C-terminal domain-like IH404_RS23725 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain IH404_RS23730 PF03466 LysR substrate binding domain IH404_RS23730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS23735 PF12833 Helix-turn-helix domain IH404_RS23735 PF14525 AraC-binding-like domain IH404_RS23740 PF00848 Ring hydroxylating alpha subunit (catalytic domain) IH404_RS23740 PF00355 Rieske [2Fe-2S] domain IH404_RS23745 PF00866 Ring hydroxylating beta subunit IH404_RS23750 PF00175 Oxidoreductase NAD-binding domain IH404_RS23750 PF00111 2Fe-2S iron-sulfur cluster binding domain IH404_RS23750 PF00970 Oxidoreductase FAD-binding domain IH404_RS23755 PF00324 Amino acid permease IH404_RS23760 PF03301 Tryptophan 2,3-dioxygenase IH404_RS23765 PF04199 Putative cyclase IH404_RS23780 PF02875 Mur ligase family, glutamate ligase domain IH404_RS23780 PF01225 Mur ligase family, catalytic domain IH404_RS23780 PF08245 Mur ligase middle domain IH404_RS23790 PF00529 HlyD membrane-fusion protein of T1SS IH404_RS23795 PF00005 ABC transporter IH404_RS23795 PF00664 ABC transporter transmembrane region IH404_RS23795 PF03412 Peptidase C39 family IH404_RS23800 PF02321 Outer membrane efflux protein IH404_RS23825 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IH404_RS23825 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IH404_RS23830 PF00171 Aldehyde dehydrogenase family IH404_RS23835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS23835 PF03466 LysR substrate binding domain IH404_RS23845 PF03707 Bacterial signalling protein N terminal repeat IH404_RS23845 PF00990 Diguanylate cyclase, GGDEF domain IH404_RS23845 PF00563 EAL domain IH404_RS23855 PF13538 UvrD-like helicase C-terminal domain IH404_RS23860 PF13361 UvrD-like helicase C-terminal domain IH404_RS23860 PF12705 PD-(D/E)XK nuclease superfamily IH404_RS23860 PF00580 UvrD/REP helicase N-terminal domain IH404_RS23865 PF17946 RecC C-terminal domain IH404_RS23895 PF01794 Ferric reductase like transmembrane component IH404_RS23900 PF00174 Oxidoreductase molybdopterin binding domain IH404_RS23905 PF01066 CDP-alcohol phosphatidyltransferase IH404_RS23910 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain IH404_RS23910 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain IH404_RS23915 PF10369 Small subunit of acetolactate synthase IH404_RS23920 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IH404_RS23920 PF00205 Thiamine pyrophosphate enzyme, central domain IH404_RS23920 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IH404_RS23925 PF04287 tRNA pseudouridine synthase C IH404_RS23935 PF14814 Bifunctional transglycosylase second domain IH404_RS23935 PF00905 Penicillin binding protein transpeptidase domain IH404_RS23935 PF00912 Transglycosylase IH404_RS23955 PF00005 ABC transporter IH404_RS23960 PF01032 FecCD transport family IH404_RS23965 PF01497 Periplasmic binding protein IH404_RS23975 PF03749 Sugar fermentation stimulation protein RE domain IH404_RS23975 PF17746 SfsA N-terminal OB domain IH404_RS23980 PF00155 Aminotransferase class I and II IH404_RS23985 PF01258 Prokaryotic dksA/traR C4-type zinc finger IH404_RS23990 PF00749 tRNA synthetases class I (E and Q), catalytic domain IH404_RS24000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS24000 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS24000 PF00989 PAS fold IH404_RS24000 PF08447 PAS fold IH404_RS24005 PF02954 Bacterial regulatory protein, Fis family IH404_RS24005 PF00158 Sigma-54 interaction domain IH404_RS24005 PF00072 Response regulator receiver domain IH404_RS24010 PF01743 Poly A polymerase head domain IH404_RS24010 PF12627 Probable RNA and SrmB- binding site of polymerase A IH404_RS24010 PF12626 Polymerase A arginine-rich C-terminus IH404_RS24015 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) IH404_RS24020 PF02548 Ketopantoate hydroxymethyltransferase IH404_RS24025 PF02569 Pantoate-beta-alanine ligase IH404_RS24030 PF00342 Phosphoglucose isomerase IH404_RS24035 PF13193 AMP-binding enzyme C-terminal domain IH404_RS24035 PF16177 Acetyl-coenzyme A synthetase N-terminus IH404_RS24035 PF00501 AMP-binding enzyme IH404_RS24040 PF10672 S-adenosylmethionine-dependent methyltransferase IH404_RS24040 PF17785 PUA-like domain IH404_RS24050 PF04972 BON domain IH404_RS24055 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain IH404_RS24055 PF00013 KH domain IH404_RS24055 PF00575 S1 RNA binding domain IH404_RS24055 PF01138 3' exoribonuclease family, domain 1 IH404_RS24055 PF03725 3' exoribonuclease family, domain 2 IH404_RS24060 PF00312 Ribosomal protein S15 IH404_RS24065 PF01509 TruB family pseudouridylate synthase (N terminal domain) IH404_RS24065 PF16198 tRNA pseudouridylate synthase B C-terminal domain IH404_RS24065 PF09157 Pseudouridine synthase II TruB, C-terminal IH404_RS24070 PF02033 Ribosome-binding factor A IH404_RS24075 PF00009 Elongation factor Tu GTP binding domain IH404_RS24075 PF11987 Translation-initiation factor 2 IH404_RS24075 PF08364 Bacterial translation initiation factor IF-2 associated region IH404_RS24075 PF04760 Translation initiation factor IF-2, N-terminal region IH404_RS24080 PF08529 NusA N-terminal domain IH404_RS24080 PF13184 NusA-like KH domain IH404_RS24080 PF00575 S1 RNA binding domain IH404_RS24085 PF17384 RimP C-terminal SH3 domain IH404_RS24085 PF02576 RimP N-terminal domain IH404_RS24100 PF03840 Preprotein translocase SecG subunit IH404_RS24105 PF00121 Triosephosphate isomerase IH404_RS24110 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IH404_RS24110 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IH404_RS24110 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IH404_RS24110 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IH404_RS24115 PF00809 Pterin binding enzyme IH404_RS24120 PF01434 Peptidase family M41 IH404_RS24120 PF06480 FtsH Extracellular IH404_RS24120 PF00004 ATPase family associated with various cellular activities (AAA) IH404_RS24120 PF17862 AAA+ lid domain IH404_RS24125 PF01728 FtsJ-like methyltransferase IH404_RS24130 PF01985 CRS1 / YhbY (CRM) domain IH404_RS24140 PF03449 Transcription elongation factor, N-terminal IH404_RS24140 PF01272 Transcription elongation factor, GreA/GreB, C-term IH404_RS24145 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IH404_RS24145 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain IH404_RS24145 PF02142 MGS-like domain IH404_RS24150 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain IH404_RS24150 PF00117 Glutamine amidotransferase class-I IH404_RS24155 PF05173 Dihydrodipicolinate reductase, C-terminus IH404_RS24155 PF01113 Dihydrodipicolinate reductase, N-terminus IH404_RS24160 PF00684 DnaJ central domain IH404_RS24160 PF01556 DnaJ C terminal domain IH404_RS24160 PF00226 DnaJ domain IH404_RS24165 PF00012 Hsp70 protein IH404_RS24170 PF01025 GrpE IH404_RS24175 PF02463 RecF/RecN/SMC N terminal domain IH404_RS24180 PF01475 Ferric uptake regulator family IH404_RS24185 PF04355 SmpA / OmlA family IH404_RS24190 PF03658 RnfH family Ubiquitin IH404_RS24195 PF03364 Polyketide cyclase / dehydrase and lipid transport IH404_RS24200 PF01668 SmpB protein IH404_RS24205 PF07729 FCD domain IH404_RS24205 PF00392 Bacterial regulatory proteins, gntR family IH404_RS24210 PF02652 L-lactate permease IH404_RS24230 PF00589 Phage integrase family IH404_RS24230 PF13356 Arm DNA-binding domain IH404_RS24245 PF17757 UvrB interaction domain IH404_RS24245 PF00271 Helicase conserved C-terminal domain IH404_RS24245 PF04851 Type III restriction enzyme, res subunit IH404_RS24245 PF02151 UvrB/uvrC motif IH404_RS24245 PF12344 Ultra-violet resistance protein B IH404_RS24280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS24280 PF03466 LysR substrate binding domain IH404_RS24295 PF01636 Phosphotransferase enzyme family IH404_RS24305 PF08543 Phosphomethylpyrimidine kinase IH404_RS24325 PF03466 LysR substrate binding domain IH404_RS24325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS24330 PF00155 Aminotransferase class I and II IH404_RS24355 PF10137 Predicted nucleotide-binding protein containing TIR-like domain IH404_RS24365 PF00271 Helicase conserved C-terminal domain IH404_RS24365 PF08148 DSHCT (NUC185) domain IH404_RS24365 PF00270 DEAD/DEAH box helicase IH404_RS24380 PF00857 Isochorismatase family IH404_RS24400 PF03350 Uncharacterized protein family, UPF0114 IH404_RS24415 PF05362 Lon protease (S16) C-terminal proteolytic domain IH404_RS24415 PF13654 AAA domain IH404_RS24445 PF01272 Transcription elongation factor, GreA/GreB, C-term IH404_RS24445 PF03449 Transcription elongation factor, N-terminal IH404_RS24450 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase IH404_RS24450 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain IH404_RS24455 PF12848 ABC transporter IH404_RS24455 PF00005 ABC transporter IH404_RS24460 PF00563 EAL domain IH404_RS24460 PF00990 Diguanylate cyclase, GGDEF domain IH404_RS24460 PF03707 Bacterial signalling protein N terminal repeat IH404_RS24465 PF00464 Serine hydroxymethyltransferase IH404_RS24470 PF02492 CobW/HypB/UreG, nucleotide-binding domain IH404_RS24470 PF07683 Cobalamin synthesis protein cobW C-terminal domain IH404_RS24475 PF04328 Selenoprotein, putative IH404_RS24480 PF02554 Carbon starvation protein CstA IH404_RS24480 PF13722 5TM C-terminal transporter carbon starvation CstA IH404_RS24485 PF07238 PilZ domain IH404_RS24490 PF18073 Rubredoxin metal binding domain IH404_RS24500 PF06628 Catalase-related immune-responsive IH404_RS24500 PF00199 Catalase IH404_RS24505 PF01741 Large-conductance mechanosensitive channel, MscL IH404_RS24510 PF00970 Oxidoreductase FAD-binding domain IH404_RS24510 PF00175 Oxidoreductase NAD-binding domain IH404_RS24515 PF03472 Autoinducer binding domain IH404_RS24515 PF00196 Bacterial regulatory proteins, luxR family IH404_RS24520 PF05175 Methyltransferase small domain IH404_RS24530 PF02322 Cytochrome bd terminal oxidase subunit II IH404_RS24535 PF01654 Cytochrome bd terminal oxidase subunit I IH404_RS24545 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain IH404_RS24545 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase IH404_RS24550 PF00941 FAD binding domain in molybdopterin dehydrogenase IH404_RS24550 PF03450 CO dehydrogenase flavoprotein C-terminal domain IH404_RS24555 PF01799 [2Fe-2S] binding domain IH404_RS24555 PF10518 TAT (twin-arginine translocation) pathway signal sequence IH404_RS24555 PF00111 2Fe-2S iron-sulfur cluster binding domain IH404_RS24565 PF00860 Permease family IH404_RS24570 PF05958 tRNA (Uracil-5-)-methyltransferase IH404_RS24575 PF02321 Outer membrane efflux protein IH404_RS24580 PF00529 HlyD membrane-fusion protein of T1SS IH404_RS24585 PF00664 ABC transporter transmembrane region IH404_RS24585 PF00005 ABC transporter IH404_RS24590 PF06438 Heme-binding protein A (HasA) IH404_RS24595 PF07715 TonB-dependent Receptor Plug Domain IH404_RS24595 PF00593 TonB dependent receptor IH404_RS24610 PF01220 Dehydroquinase class II IH404_RS24615 PF18317 Shikimate 5'-dehydrogenase C-terminal domain IH404_RS24615 PF08501 Shikimate dehydrogenase substrate binding domain IH404_RS24620 PF17938 Tetracyclin repressor-like, C-terminal domain IH404_RS24620 PF00440 Bacterial regulatory proteins, tetR family IH404_RS24625 PF01261 Xylose isomerase-like TIM barrel IH404_RS24625 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IH404_RS24630 PF07690 Major Facilitator Superfamily IH404_RS24645 PF04228 Putative neutral zinc metallopeptidase IH404_RS24655 PF13419 Haloacid dehalogenase-like hydrolase IH404_RS24665 PF13302 Acetyltransferase (GNAT) domain IH404_RS24670 PF00850 Histone deacetylase domain IH404_RS24675 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IH404_RS24675 PF07992 Pyridine nucleotide-disulphide oxidoreductase IH404_RS24680 PF00270 DEAD/DEAH box helicase IH404_RS24680 PF00271 Helicase conserved C-terminal domain IH404_RS24685 PF00892 EamA-like transporter family IH404_RS24690 PF01037 Lrp/AsnC ligand binding domain IH404_RS24690 PF13404 AsnC-type helix-turn-helix domain IH404_RS24705 PF00929 Exonuclease IH404_RS24705 PF04851 Type III restriction enzyme, res subunit IH404_RS24705 PF13307 Helicase C-terminal domain IH404_RS24715 PF09849 Uncharacterized protein conserved in bacteria (DUF2076) IH404_RS24730 PF01261 Xylose isomerase-like TIM barrel IH404_RS24740 PF13360 PQQ-like domain IH404_RS24765 PF08482 ATP-dependent helicase C-terminal IH404_RS24765 PF04408 Helicase associated domain (HA2) IH404_RS24765 PF00270 DEAD/DEAH box helicase IH404_RS24765 PF00271 Helicase conserved C-terminal domain IH404_RS24780 PF16916 Dimerisation domain of Zinc Transporter IH404_RS24780 PF01545 Cation efflux family IH404_RS24790 PF01037 Lrp/AsnC ligand binding domain IH404_RS24800 PF00849 RNA pseudouridylate synthase IH404_RS24805 PF01048 Phosphorylase superfamily IH404_RS24805 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus IH404_RS24810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IH404_RS24810 PF02770 Acyl-CoA dehydrogenase, middle domain IH404_RS24810 PF18158 Adaptive response protein AidB N-terminal domain IH404_RS24815 PF00072 Response regulator receiver domain IH404_RS24815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS24815 PF17149 Periplasmic sensor domain found in signal transduction proteins IH404_RS24815 PF01627 Hpt domain IH404_RS24815 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS24815 PF00672 HAMP domain IH404_RS24820 PF08543 Phosphomethylpyrimidine kinase IH404_RS24825 PF02581 Thiamine monophosphate synthase IH404_RS24830 PF00202 Aminotransferase class-III IH404_RS24845 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS24855 PF00497 Bacterial extracellular solute-binding proteins, family 3 IH404_RS24860 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IH404_RS24860 PF07992 Pyridine nucleotide-disulphide oxidoreductase IH404_RS24870 PF00919 Uncharacterized protein family UPF0004 IH404_RS24870 PF04055 Radical SAM superfamily IH404_RS24870 PF01938 TRAM domain IH404_RS24875 PF02562 PhoH-like protein IH404_RS24880 PF02130 Uncharacterized protein family UPF0054 IH404_RS24885 PF03471 Transporter associated domain IH404_RS24885 PF00571 CBS domain IH404_RS24890 PF00795 Carbon-nitrogen hydrolase IH404_RS24900 PF08264 Anticodon-binding domain of tRNA IH404_RS24900 PF00133 tRNA synthetases class I (I, L, M and V) IH404_RS24900 PF13603 Leucyl-tRNA synthetase, Domain 2 IH404_RS24900 PF09334 tRNA synthetases class I (M) IH404_RS24910 PF06144 DNA polymerase III, delta subunit IH404_RS24910 PF14840 Processivity clamp loader gamma complex DNA pol III C-term IH404_RS24920 PF13406 Transglycosylase SLT domain IH404_RS24925 PF17676 LD-carboxypeptidase C-terminal domain IH404_RS24925 PF02016 LD-carboxypeptidase N-terminal domain IH404_RS24930 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family IH404_RS24930 PF04055 Radical SAM superfamily IH404_RS24935 PF03099 Biotin/lipoate A/B protein ligase family IH404_RS24940 PF04359 Protein of unknown function (DUF493) IH404_RS24945 PF00768 D-alanyl-D-alanine carboxypeptidase IH404_RS24945 PF07943 Penicillin-binding protein 5, C-terminal domain IH404_RS24950 PF03330 Lytic transglycolase IH404_RS24950 PF05036 Sporulation related domain IH404_RS24955 PF13406 Transglycosylase SLT domain IH404_RS24960 PF01098 Cell cycle protein IH404_RS24965 PF00905 Penicillin binding protein transpeptidase domain IH404_RS24965 PF03717 Penicillin-binding Protein dimerisation domain IH404_RS24970 PF02590 Predicted SPOUT methyltransferase IH404_RS24980 PF01467 Cytidylyltransferase-like IH404_RS24985 PF00171 Aldehyde dehydrogenase family IH404_RS24990 PF02245 Methylpurine-DNA glycosylase (MPG) IH404_RS24995 PF09335 SNARE associated Golgi protein IH404_RS25010 PF04172 LrgB-like family IH404_RS25020 PF01575 MaoC like domain IH404_RS25030 PF13460 NAD(P)H-binding IH404_RS25040 PF02441 Flavoprotein IH404_RS25045 PF02875 Mur ligase family, glutamate ligase domain IH404_RS25045 PF08245 Mur ligase middle domain IH404_RS25045 PF01225 Mur ligase family, catalytic domain IH404_RS25055 PF00158 Sigma-54 interaction domain IH404_RS25055 PF02954 Bacterial regulatory protein, Fis family IH404_RS25055 PF01590 GAF domain IH404_RS25060 PF00171 Aldehyde dehydrogenase family IH404_RS25065 PF13520 Amino acid permease IH404_RS25070 PF06751 Ethanolamine ammonia lyase large subunit (EutB) IH404_RS25075 PF05985 Ethanolamine ammonia-lyase light chain (EutC) IH404_RS25080 PF00583 Acetyltransferase (GNAT) family IH404_RS25085 PF09335 SNARE associated Golgi protein IH404_RS25090 PF06167 Glucose-regulated metallo-peptidase M90 IH404_RS25095 PF00719 Inorganic pyrophosphatase IH404_RS25100 PF00717 Peptidase S24-like IH404_RS25100 PF01381 Helix-turn-helix IH404_RS25115 PF00857 Isochorismatase family IH404_RS25125 PF02525 Flavodoxin-like fold IH404_RS25130 PF13411 MerR HTH family regulatory protein IH404_RS25130 PF07739 TipAS antibiotic-recognition domain IH404_RS25135 PF03527 RHS protein IH404_RS25135 PF05593 RHS Repeat IH404_RS25145 PF02609 Exonuclease VII small subunit IH404_RS25150 PF00348 Polyprenyl synthetase IH404_RS25155 PF02780 Transketolase, C-terminal domain IH404_RS25155 PF02779 Transketolase, pyrimidine binding domain IH404_RS25155 PF13292 1-deoxy-D-xylulose-5-phosphate synthase IH404_RS25160 PF00593 TonB dependent receptor IH404_RS25160 PF07715 TonB-dependent Receptor Plug Domain IH404_RS25165 PF01497 Periplasmic binding protein IH404_RS25175 PF00925 GTP cyclohydrolase II IH404_RS25185 PF02769 AIR synthase related protein, C-terminal domain IH404_RS25185 PF00586 AIR synthase related protein, N-terminal domain IH404_RS25190 PF01029 NusB family IH404_RS25195 PF00885 6,7-dimethyl-8-ribityllumazine synthase IH404_RS25200 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase IH404_RS25200 PF00925 GTP cyclohydrolase II IH404_RS25205 PF00677 Lumazine binding domain IH404_RS25210 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region IH404_RS25210 PF01872 RibD C-terminal domain IH404_RS25215 PF03477 ATP cone domain IH404_RS25230 PF00085 Thioredoxin IH404_RS25245 PF00005 ABC transporter IH404_RS25260 PF03922 OmpW family IH404_RS25270 PF08494 DEAD/H associated IH404_RS25270 PF00271 Helicase conserved C-terminal domain IH404_RS25270 PF00270 DEAD/DEAH box helicase IH404_RS25275 PF00924 Mechanosensitive ion channel IH404_RS25285 PF03372 Endonuclease/Exonuclease/phosphatase family IH404_RS25290 PF13091 PLD-like domain IH404_RS25295 PF03706 Lysylphosphatidylglycerol synthase TM region IH404_RS25310 PF00072 Response regulator receiver domain IH404_RS25310 PF12833 Helix-turn-helix domain IH404_RS25315 PF00857 Isochorismatase family IH404_RS25325 PF00392 Bacterial regulatory proteins, gntR family IH404_RS25325 PF00155 Aminotransferase class I and II IH404_RS25345 PF01810 LysE type translocator IH404_RS25350 PF02543 Carbamoyltransferase N-terminus IH404_RS25350 PF16861 Carbamoyltransferase C-terminus IH404_RS25360 PF00202 Aminotransferase class-III IH404_RS25375 PF01810 LysE type translocator IH404_RS25380 PF00436 Single-strand binding protein family IH404_RS25385 PF07690 Major Facilitator Superfamily IH404_RS25390 PF17760 UvrA interaction domain IH404_RS25390 PF17755 UvrA DNA-binding domain IH404_RS25395 PF00210 Ferritin-like domain IH404_RS25400 PF00199 Catalase IH404_RS25400 PF06628 Catalase-related immune-responsive IH404_RS25405 PF01196 Ribosomal protein L17 IH404_RS25410 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain IH404_RS25410 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain IH404_RS25410 PF01000 RNA polymerase Rpb3/RpoA insert domain IH404_RS25415 PF00163 Ribosomal protein S4/S9 N-terminal domain IH404_RS25415 PF01479 S4 domain IH404_RS25420 PF00411 Ribosomal protein S11 IH404_RS25425 PF00416 Ribosomal protein S13/S18 IH404_RS25430 PF00444 Ribosomal protein L36 IH404_RS25435 PF00344 SecY translocase IH404_RS25440 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A IH404_RS25445 PF00327 Ribosomal protein L30p/L7e IH404_RS25450 PF00333 Ribosomal protein S5, N-terminal domain IH404_RS25450 PF03719 Ribosomal protein S5, C-terminal domain IH404_RS25455 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast IH404_RS25460 PF00347 Ribosomal protein L6 IH404_RS25465 PF00410 Ribosomal protein S8 IH404_RS25470 PF00253 Ribosomal protein S14p/S29e IH404_RS25475 PF00673 ribosomal L5P family C-terminus IH404_RS25475 PF00281 Ribosomal protein L5 IH404_RS25480 PF00467 KOW motif IH404_RS25480 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 IH404_RS25485 PF00238 Ribosomal protein L14p/L23e IH404_RS25490 PF00366 Ribosomal protein S17 IH404_RS25495 PF00831 Ribosomal L29 protein IH404_RS25500 PF00252 Ribosomal protein L16p/L10e IH404_RS25505 PF07650 KH domain IH404_RS25505 PF00189 Ribosomal protein S3, C-terminal domain IH404_RS25510 PF00237 Ribosomal protein L22p/L17e IH404_RS25515 PF00203 Ribosomal protein S19 IH404_RS25520 PF03947 Ribosomal Proteins L2, C-terminal domain IH404_RS25520 PF00181 Ribosomal Proteins L2, RNA binding domain IH404_RS25525 PF00276 Ribosomal protein L23 IH404_RS25530 PF00573 Ribosomal protein L4/L1 family IH404_RS25535 PF00297 Ribosomal protein L3 IH404_RS25540 PF00338 Ribosomal protein S10p/S20e IH404_RS25545 PF03143 Elongation factor Tu C-terminal domain IH404_RS25545 PF03144 Elongation factor Tu domain 2 IH404_RS25545 PF00009 Elongation factor Tu GTP binding domain IH404_RS25550 PF03144 Elongation factor Tu domain 2 IH404_RS25550 PF00009 Elongation factor Tu GTP binding domain IH404_RS25550 PF00679 Elongation factor G C-terminus IH404_RS25550 PF14492 Elongation Factor G, domain II IH404_RS25550 PF03764 Elongation factor G, domain IV IH404_RS25555 PF00177 Ribosomal protein S7p/S5e IH404_RS25560 PF00164 Ribosomal protein S12/S23 IH404_RS25565 PF04997 RNA polymerase Rpb1, domain 1 IH404_RS25565 PF05000 RNA polymerase Rpb1, domain 4 IH404_RS25565 PF00623 RNA polymerase Rpb1, domain 2 IH404_RS25565 PF04998 RNA polymerase Rpb1, domain 5 IH404_RS25565 PF04983 RNA polymerase Rpb1, domain 3 IH404_RS25570 PF00562 RNA polymerase Rpb2, domain 6 IH404_RS25570 PF04561 RNA polymerase Rpb2, domain 2 IH404_RS25570 PF04560 RNA polymerase Rpb2, domain 7 IH404_RS25570 PF04563 RNA polymerase beta subunit IH404_RS25570 PF10385 RNA polymerase beta subunit external 1 domain IH404_RS25570 PF04565 RNA polymerase Rpb2, domain 3 IH404_RS25575 PF00542 Ribosomal protein L7/L12 C-terminal domain IH404_RS25575 PF16320 Ribosomal protein L7/L12 dimerisation domain IH404_RS25580 PF00466 Ribosomal protein L10 IH404_RS25585 PF00687 Ribosomal protein L1p/L10e family IH404_RS25590 PF00298 Ribosomal protein L11, RNA binding domain IH404_RS25590 PF03946 Ribosomal protein L11, N-terminal domain IH404_RS25595 PF02357 Transcription termination factor nusG IH404_RS25595 PF00467 KOW motif IH404_RS25600 PF00584 SecE/Sec61-gamma subunits of protein translocation complex IH404_RS25630 PF03309 Type III pantothenate kinase IH404_RS25635 PF02237 Biotin protein ligase C terminal domain IH404_RS25635 PF03099 Biotin/lipoate A/B protein ligase family IH404_RS25635 PF08279 HTH domain IH404_RS25665 PF00579 tRNA synthetases class I (W and Y) IH404_RS25665 PF01479 S4 domain IH404_RS25670 PF01551 Peptidase family M23 IH404_RS25670 PF04225 Opacity-associated protein A LysM-like domain IH404_RS25675 PF03702 Anhydro-N-acetylmuramic acid kinase IH404_RS25680 PF01521 Iron-sulphur cluster biosynthesis IH404_RS25685 PF01118 Semialdehyde dehydrogenase, NAD binding domain IH404_RS25685 PF02774 Semialdehyde dehydrogenase, dimerisation domain IH404_RS25690 PF03653 Uncharacterised protein family (UPF0093) IH404_RS25705 PF00106 short chain dehydrogenase IH404_RS25710 PF01230 HIT domain IH404_RS25715 PF03232 Ubiquinone biosynthesis protein COQ7 IH404_RS25720 PF02566 OsmC-like protein IH404_RS25725 PF00027 Cyclic nucleotide-binding domain IH404_RS25725 PF13545 Crp-like helix-turn-helix domain IH404_RS25735 PF00218 Indole-3-glycerol phosphate synthase IH404_RS25740 PF02885 Glycosyl transferase family, helical bundle domain IH404_RS25740 PF00591 Glycosyl transferase family, a/b domain IH404_RS25745 PF00117 Glutamine amidotransferase class-I IH404_RS25750 PF03797 Autotransporter beta-domain IH404_RS25750 PF00657 GDSL-like Lipase/Acylhydrolase IH404_RS25755 PF04715 Anthranilate synthase component I, N terminal region IH404_RS25755 PF00425 chorismate binding enzyme IH404_RS25760 PF13419 Haloacid dehalogenase-like hydrolase IH404_RS25765 PF00834 Ribulose-phosphate 3 epimerase family IH404_RS25770 PF00465 Iron-containing alcohol dehydrogenase IH404_RS25780 PF00226 DnaJ domain IH404_RS25780 PF05099 Tellurite resistance protein TerB IH404_RS25785 PF00483 Nucleotidyl transferase IH404_RS25790 PF01636 Phosphotransferase enzyme family IH404_RS25795 PF04453 LPS transport system D IH404_RS25795 PF03968 OstA-like protein IH404_RS25800 PF00639 PPIC-type PPIASE domain IH404_RS25800 PF09312 SurA N-terminal domain IH404_RS25805 PF04166 Pyridoxal phosphate biosynthetic protein PdxA IH404_RS25810 PF00398 Ribosomal RNA adenine dimethylase IH404_RS25815 PF04379 ApaG domain IH404_RS25820 PF00149 Calcineurin-like phosphoesterase IH404_RS25825 PF00581 Rhodanese-like domain IH404_RS25830 PF08298 PrkA AAA domain IH404_RS25830 PF06798 PrkA serine protein kinase C-terminal domain IH404_RS25835 PF04285 Protein of unknown function (DUF444) IH404_RS25840 PF04293 SpoVR like protein IH404_RS25845 PF01743 Poly A polymerase head domain IH404_RS25845 PF01966 HD domain IH404_RS25845 PF12627 Probable RNA and SrmB- binding site of polymerase A IH404_RS25855 PF02152 Dihydroneopterin aldolase IH404_RS25860 PF02660 Glycerol-3-phosphate acyltransferase IH404_RS25865 PF00814 Glycoprotease family IH404_RS25870 PF01165 Ribosomal protein S21 IH404_RS25875 PF13662 Toprim domain IH404_RS25875 PF10410 DnaB-helicase binding domain of primase IH404_RS25875 PF08278 DNA primase DnaG DnaB-binding IH404_RS25875 PF08275 DNA primase catalytic core, N-terminal domain IH404_RS25875 PF01807 CHC2 zinc finger IH404_RS25880 PF00140 Sigma-70 factor, region 1.2 IH404_RS25880 PF04545 Sigma-70, region 4 IH404_RS25880 PF04546 Sigma-70, non-essential region IH404_RS25880 PF04539 Sigma-70 region 3 IH404_RS25880 PF04542 Sigma-70 region 2 IH404_RS25880 PF03979 Sigma-70 factor, region 1.1 IH404_RS25885 PF03707 Bacterial signalling protein N terminal repeat IH404_RS25885 PF00563 EAL domain IH404_RS25885 PF00990 Diguanylate cyclase, GGDEF domain IH404_RS25900 PF01593 Flavin containing amine oxidoreductase IH404_RS25905 PF00795 Carbon-nitrogen hydrolase IH404_RS25910 PF05193 Peptidase M16 inactive domain IH404_RS25910 PF00675 Insulinase (Peptidase family M16) IH404_RS25915 PF08042 PqqA family IH404_RS25920 PF12706 Beta-lactamase superfamily domain IH404_RS25925 PF03070 TENA/THI-4/PQQC family IH404_RS25930 PF05402 Coenzyme PQQ synthesis protein D (PqqD) IH404_RS25935 PF13186 Iron-sulfur cluster-binding domain IH404_RS25935 PF04055 Radical SAM superfamily IH404_RS25940 PF01679 Proteolipid membrane potential modulator IH404_RS25945 PF00202 Aminotransferase class-III IH404_RS25950 PF03466 LysR substrate binding domain IH404_RS25950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS25955 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IH404_RS25955 PF02770 Acyl-CoA dehydrogenase, middle domain IH404_RS25955 PF12806 Acetyl-CoA dehydrogenase C-terminal like IH404_RS25955 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IH404_RS25960 PF00990 Diguanylate cyclase, GGDEF domain IH404_RS25965 PF02770 Acyl-CoA dehydrogenase, middle domain IH404_RS25965 PF12806 Acetyl-CoA dehydrogenase C-terminal like IH404_RS25965 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IH404_RS25965 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IH404_RS25980 PF08241 Methyltransferase domain IH404_RS25985 PF12697 Alpha/beta hydrolase family IH404_RS25985 PF08241 Methyltransferase domain IH404_RS25990 PF00155 Aminotransferase class I and II IH404_RS25995 PF04055 Radical SAM superfamily IH404_RS25995 PF06968 Biotin and Thiamin Synthesis associated domain IH404_RS26005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS26005 PF03459 TOBE domain IH404_RS26015 PF01636 Phosphotransferase enzyme family IH404_RS26020 PF00892 EamA-like transporter family IH404_RS26030 PF01274 Malate synthase IH404_RS26040 PF00072 Response regulator receiver domain IH404_RS26040 PF00158 Sigma-54 interaction domain IH404_RS26050 PF00929 Exonuclease IH404_RS26055 PF04542 Sigma-70 region 2 IH404_RS26055 PF08281 Sigma-70, region 4 IH404_RS26065 PF00593 TonB dependent receptor IH404_RS26065 PF07715 TonB-dependent Receptor Plug Domain IH404_RS26080 PF13417 Glutathione S-transferase, N-terminal domain IH404_RS26080 PF00043 Glutathione S-transferase, C-terminal domain IH404_RS26085 PF06123 Inner membrane protein CreD IH404_RS26090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS26090 PF00672 HAMP domain IH404_RS26090 PF00512 His Kinase A (phospho-acceptor) domain IH404_RS26095 PF00072 Response regulator receiver domain IH404_RS26095 PF00486 Transcriptional regulatory protein, C terminal IH404_RS26100 PF08443 RimK-like ATP-grasp domain IH404_RS26100 PF18030 RimK PreATP-grasp domain IH404_RS26105 PF01553 Acyltransferase IH404_RS26145 PF08240 Alcohol dehydrogenase GroES-like domain IH404_RS26145 PF01262 Alanine dehydrogenase/PNT, C-terminal domain IH404_RS26150 PF00551 Formyl transferase IH404_RS26160 PF08669 Glycine cleavage T-protein C-terminal barrel domain IH404_RS26160 PF07992 Pyridine nucleotide-disulphide oxidoreductase IH404_RS26160 PF17806 Sarcosine oxidase A3 domain IH404_RS26160 PF01571 Aminomethyltransferase folate-binding domain IH404_RS26165 PF04267 Sarcosine oxidase, delta subunit family IH404_RS26170 PF01266 FAD dependent oxidoreductase IH404_RS26175 PF00464 Serine hydroxymethyltransferase IH404_RS26185 PF01134 Glucose inhibited division protein A IH404_RS26185 PF13932 GidA associated domain IH404_RS26200 PF01593 Flavin containing amine oxidoreductase IH404_RS26215 PF05857 TraX protein IH404_RS26220 PF01212 Beta-eliminating lyase IH404_RS26230 PF01593 Flavin containing amine oxidoreductase IH404_RS26235 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin IH404_RS26240 PF00795 Carbon-nitrogen hydrolase IH404_RS26245 PF00970 Oxidoreductase FAD-binding domain IH404_RS26245 PF00175 Oxidoreductase NAD-binding domain IH404_RS26245 PF00042 Globin IH404_RS26250 PF00848 Ring hydroxylating alpha subunit (catalytic domain) IH404_RS26250 PF00355 Rieske [2Fe-2S] domain IH404_RS26260 PF00766 Electron transfer flavoprotein FAD-binding domain IH404_RS26260 PF01012 Electron transfer flavoprotein domain IH404_RS26265 PF02754 Cysteine-rich domain IH404_RS26265 PF13183 4Fe-4S dicluster domain IH404_RS26270 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IH404_RS26290 PF00264 Common central domain of tyrosinase IH404_RS26305 PF01965 DJ-1/PfpI family IH404_RS26305 PF12833 Helix-turn-helix domain IH404_RS26315 PF05853 beta-keto acid cleavage enzyme IH404_RS26320 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IH404_RS26320 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IH404_RS26335 PF12833 Helix-turn-helix domain IH404_RS26335 PF01965 DJ-1/PfpI family IH404_RS26340 PF03315 Serine dehydratase beta chain IH404_RS26340 PF03313 Serine dehydratase alpha chain IH404_RS26345 PF04069 Substrate binding domain of ABC-type glycine betaine transport system IH404_RS26350 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS26355 PF00005 ABC transporter IH404_RS26355 PF00571 CBS domain IH404_RS26360 PF02028 BCCT, betaine/carnitine/choline family transporter IH404_RS26365 PF00440 Bacterial regulatory proteins, tetR family IH404_RS26365 PF13977 BetI-type transcriptional repressor, C-terminal IH404_RS26370 PF00171 Aldehyde dehydrogenase family IH404_RS26375 PF00732 GMC oxidoreductase IH404_RS26375 PF05199 GMC oxidoreductase IH404_RS26390 PF00561 alpha/beta hydrolase fold IH404_RS26395 PF07690 Major Facilitator Superfamily IH404_RS26400 PF03880 DbpA RNA binding domain IH404_RS26400 PF00270 DEAD/DEAH box helicase IH404_RS26400 PF00271 Helicase conserved C-terminal domain IH404_RS26410 PF12805 FUSC-like inner membrane protein yccS IH404_RS26420 PF13673 Acetyltransferase (GNAT) domain IH404_RS26430 PF01863 Protein of unknown function DUF45 IH404_RS26435 PF00563 EAL domain IH404_RS26435 PF00990 Diguanylate cyclase, GGDEF domain IH404_RS26435 PF03707 Bacterial signalling protein N terminal repeat IH404_RS26465 PF01116 Fructose-bisphosphate aldolase class-II IH404_RS26480 PF00162 Phosphoglycerate kinase IH404_RS26485 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IH404_RS26485 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IH404_RS26490 PF02780 Transketolase, C-terminal domain IH404_RS26490 PF02779 Transketolase, pyrimidine binding domain IH404_RS26490 PF00456 Transketolase, thiamine diphosphate binding domain IH404_RS26495 PF01022 Bacterial regulatory protein, arsR family IH404_RS26500 PF02772 S-adenosylmethionine synthetase, central domain IH404_RS26500 PF00438 S-adenosylmethionine synthetase, N-terminal domain IH404_RS26500 PF02773 S-adenosylmethionine synthetase, C-terminal domain IH404_RS26505 PF01653 NAD-dependent DNA ligase adenylation domain IH404_RS26505 PF03120 NAD-dependent DNA ligase OB-fold domain IH404_RS26510 PF06476 Protein of unknown function (DUF1090) IH404_RS26535 PF00999 Sodium/hydrogen exchanger family IH404_RS26540 PF01226 Formate/nitrite transporter IH404_RS26555 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain IH404_RS26555 PF05221 S-adenosyl-L-homocysteine hydrolase IH404_RS26560 PF02219 Methylenetetrahydrofolate reductase IH404_RS26575 PF00270 DEAD/DEAH box helicase IH404_RS26575 PF00271 Helicase conserved C-terminal domain IH404_RS26580 PF04264 YceI-like domain IH404_RS26585 PF01292 Prokaryotic cytochrome b561 IH404_RS26590 PF00202 Aminotransferase class-III IH404_RS26595 PF04452 RNA methyltransferase IH404_RS26600 PF00497 Bacterial extracellular solute-binding proteins, family 3 IH404_RS26605 PF01266 FAD dependent oxidoreductase IH404_RS26610 PF03466 LysR substrate binding domain IH404_RS26610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS26615 PF03006 Haemolysin-III related IH404_RS26620 PF03466 LysR substrate binding domain IH404_RS26620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS26635 PF00698 Acyl transferase domain IH404_RS26640 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG IH404_RS26650 PF01039 Carboxyl transferase domain IH404_RS26655 PF06857 Malonate decarboxylase delta subunit (MdcD) IH404_RS26660 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase IH404_RS26665 PF16957 Malonate decarboxylase, alpha subunit, transporter IH404_RS26675 PF01381 Helix-turn-helix IH404_RS26690 PF00072 Response regulator receiver domain IH404_RS26690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IH404_RS26690 PF02895 Signal transducing histidine kinase, homodimeric domain IH404_RS26690 PF01584 CheW-like domain IH404_RS26690 PF01627 Hpt domain IH404_RS26695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IH404_RS26695 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term IH404_RS26700 PF01584 CheW-like domain IH404_RS26705 PF00072 Response regulator receiver domain IH404_RS26710 PF00072 Response regulator receiver domain IH404_RS26715 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain IH404_RS26715 PF02951 Prokaryotic glutathione synthetase, N-terminal domain IH404_RS26725 PF02622 Uncharacterized ACR, COG1678 IH404_RS26730 PF03652 Holliday junction resolvase IH404_RS26735 PF00156 Phosphoribosyl transferase domain IH404_RS26740 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IH404_RS26740 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IH404_RS26745 PF01979 Amidohydrolase family IH404_RS26755 PF00877 NlpC/P60 family IH404_RS26760 PF00437 Type II/IV secretion system protein IH404_RS26765 PF01168 Alanine racemase, N-terminal domain IH404_RS26770 PF14748 Pyrroline-5-carboxylate reductase dimerisation IH404_RS26770 PF03807 NADP oxidoreductase coenzyme F420-dependent IH404_RS26775 PF02325 YGGT family IH404_RS26780 PF00561 alpha/beta hydrolase fold IH404_RS26785 PF00561 alpha/beta hydrolase fold IH404_RS26785 PF07021 Methionine biosynthesis protein MetW IH404_RS26795 PF01725 Ham1 family IH404_RS26800 PF04055 Radical SAM superfamily IH404_RS26800 PF06969 HemN C-terminal domain IH404_RS26810 PF02390 Putative methyltransferase IH404_RS26815 PF05690 Thiazole biosynthesis protein ThiG IH404_RS26820 PF02597 ThiS family IH404_RS26820 PF05690 Thiazole biosynthesis protein ThiG IH404_RS26825 PF04241 Protein of unknown function (DUF423) IH404_RS26830 PF00912 Transglycosylase IH404_RS26835 PF04542 Sigma-70 region 2 IH404_RS26835 PF04545 Sigma-70, region 4 IH404_RS26835 PF00140 Sigma-70 factor, region 1.2 IH404_RS26840 PF18075 FtsX extracellular domain IH404_RS26845 PF00005 ABC transporter IH404_RS26850 PF00448 SRP54-type protein, GTPase domain IH404_RS26850 PF02881 SRP54-type protein, helical bundle domain IH404_RS26855 PF05193 Peptidase M16 inactive domain IH404_RS26855 PF00675 Insulinase (Peptidase family M16) IH404_RS26860 PF05193 Peptidase M16 inactive domain IH404_RS26870 PF00561 alpha/beta hydrolase fold IH404_RS26875 PF00581 Rhodanese-like domain IH404_RS26880 PF00440 Bacterial regulatory proteins, tetR family IH404_RS26885 PF00171 Aldehyde dehydrogenase family IH404_RS26895 PF00732 GMC oxidoreductase IH404_RS26895 PF05199 GMC oxidoreductase IH404_RS26900 PF01467 Cytidylyltransferase-like IH404_RS26905 PF00037 4Fe-4S binding domain IH404_RS26910 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain IH404_RS26910 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain IH404_RS26910 PF06827 Zinc finger found in FPG and IleRS IH404_RS26920 PF17785 PUA-like domain IH404_RS26920 PF10672 S-adenosylmethionine-dependent methyltransferase IH404_RS26925 PF07690 Major Facilitator Superfamily IH404_RS26930 PF00920 Dehydratase family IH404_RS26935 PF07715 TonB-dependent Receptor Plug Domain IH404_RS26935 PF00593 TonB dependent receptor IH404_RS26935 PF07660 Secretin and TonB N terminus short domain IH404_RS26955 PF00375 Sodium:dicarboxylate symporter family IH404_RS26960 PF00186 Dihydrofolate reductase IH404_RS26970 PF10396 GTP-binding protein TrmE N-terminus IH404_RS26970 PF12631 MnmE helical domain IH404_RS26970 PF01926 50S ribosome-binding GTPase IH404_RS27000 PF01966 HD domain IH404_RS27005 PF01266 FAD dependent oxidoreductase IH404_RS27015 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS27020 PF00005 ABC transporter IH404_RS27020 PF08402 TOBE domain IH404_RS27025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS27025 PF03466 LysR substrate binding domain IH404_RS27030 PF00403 Heavy-metal-associated domain IH404_RS27035 PF13411 MerR HTH family regulatory protein IH404_RS27040 PF00303 Thymidylate synthase IH404_RS27045 PF01790 Prolipoprotein diacylglyceryl transferase IH404_RS27055 PF02896 PEP-utilising enzyme, TIM barrel domain IH404_RS27055 PF00391 PEP-utilising enzyme, mobile domain IH404_RS27055 PF05524 PEP-utilising enzyme, N-terminal IH404_RS27055 PF01590 GAF domain IH404_RS27060 PF00293 NUDIX domain IH404_RS27075 PF00585 C-terminal regulatory domain of Threonine dehydratase IH404_RS27075 PF00291 Pyridoxal-phosphate dependent enzyme IH404_RS27080 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) IH404_RS27085 PF04389 Peptidase family M28 IH404_RS27090 PF06977 SdiA-regulated IH404_RS27095 PF06977 SdiA-regulated IH404_RS27100 PF01557 Fumarylacetoacetate (FAA) hydrolase family IH404_RS27105 PF01565 FAD binding domain IH404_RS27105 PF02913 FAD linked oxidases, C-terminal domain IH404_RS27110 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IH404_RS27110 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IH404_RS27110 PF01842 ACT domain IH404_RS27120 PF00497 Bacterial extracellular solute-binding proteins, family 3 IH404_RS27145 PF01804 Penicillin amidase IH404_RS27150 PF01965 DJ-1/PfpI family IH404_RS27150 PF12833 Helix-turn-helix domain IH404_RS27160 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS27165 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS27170 PF08402 TOBE domain IH404_RS27170 PF00005 ABC transporter IH404_RS27175 PF13416 Bacterial extracellular solute-binding protein IH404_RS27180 PF13416 Bacterial extracellular solute-binding protein IH404_RS27185 PF00202 Aminotransferase class-III IH404_RS27190 PF00120 Glutamine synthetase, catalytic domain IH404_RS27195 PF00120 Glutamine synthetase, catalytic domain IH404_RS27205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS27205 PF03459 TOBE domain IH404_RS27210 PF00005 ABC transporter IH404_RS27215 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS27220 PF00296 Luciferase-like monooxygenase IH404_RS27225 PF09084 NMT1/THI5 like IH404_RS27230 PF03358 NADPH-dependent FMN reductase IH404_RS27235 PF00578 AhpC/TSA family IH404_RS27235 PF10417 C-terminal domain of 1-Cys peroxiredoxin IH404_RS27240 PF03573 outer membrane porin, OprD family IH404_RS27245 PF04069 Substrate binding domain of ABC-type glycine betaine transport system IH404_RS27250 PF00696 Amino acid kinase family IH404_RS27250 PF00583 Acetyltransferase (GNAT) family IH404_RS27255 PF07687 Peptidase dimerisation domain IH404_RS27255 PF01546 Peptidase family M20/M25/M40 IH404_RS27265 PF13404 AsnC-type helix-turn-helix domain IH404_RS27265 PF01037 Lrp/AsnC ligand binding domain IH404_RS27275 PF00437 Type II/IV secretion system protein IH404_RS27275 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain IH404_RS27280 PF01145 SPFH domain / Band 7 family IH404_RS27280 PF16200 C-terminal region of band_7 IH404_RS27295 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family IH404_RS27300 PF01597 Glycine cleavage H-protein IH404_RS27305 PF08669 Glycine cleavage T-protein C-terminal barrel domain IH404_RS27305 PF01571 Aminomethyltransferase folate-binding domain IH404_RS27310 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS27320 PF01494 FAD binding domain IH404_RS27325 PF01494 FAD binding domain IH404_RS27330 PF00557 Metallopeptidase family M24 IH404_RS27330 PF05195 Aminopeptidase P, N-terminal domain IH404_RS27335 PF03695 Uncharacterised protein family (UPF0149) IH404_RS27345 PF05164 Cell division protein ZapA IH404_RS27355 PF01812 5-formyltetrahydrofolate cyclo-ligase family IH404_RS27370 PF13533 Biotin-lipoyl like IH404_RS27375 PF00005 ABC transporter IH404_RS27390 PF14765 Polyketide synthase dehydratase IH404_RS27390 PF00698 Acyl transferase domain IH404_RS27390 PF08240 Alcohol dehydrogenase GroES-like domain IH404_RS27390 PF08990 Erythronolide synthase docking IH404_RS27390 PF16197 Ketoacyl-synthetase C-terminal extension IH404_RS27390 PF00109 Beta-ketoacyl synthase, N-terminal domain IH404_RS27390 PF02801 Beta-ketoacyl synthase, C-terminal domain IH404_RS27390 PF08659 KR domain IH404_RS27390 PF00550 Phosphopantetheine attachment site IH404_RS27395 PF07690 Major Facilitator Superfamily IH404_RS27405 PF07715 TonB-dependent Receptor Plug Domain IH404_RS27405 PF00593 TonB dependent receptor IH404_RS27415 PF00175 Oxidoreductase NAD-binding domain IH404_RS27420 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase IH404_RS27425 PF01757 Acyltransferase family IH404_RS27430 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IH404_RS27430 PF07498 Rho termination factor, N-terminal domain IH404_RS27430 PF07497 Rho termination factor, RNA-binding domain IH404_RS27435 PF00085 Thioredoxin IH404_RS27440 PF00392 Bacterial regulatory proteins, gntR family IH404_RS27440 PF07729 FCD domain IH404_RS27445 PF00497 Bacterial extracellular solute-binding proteins, family 3 IH404_RS27450 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS27455 PF00528 Binding-protein-dependent transport system inner membrane component IH404_RS27460 PF00005 ABC transporter IH404_RS27470 PF00577 Outer membrane usher protein IH404_RS27470 PF13953 PapC C-terminal domain IH404_RS27470 PF13954 PapC N-terminal domain IH404_RS27475 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain IH404_RS27485 PF02541 Ppx/GppA phosphatase family IH404_RS27490 PF13090 Polyphosphate kinase C-terminal domain 2 IH404_RS27490 PF02503 Polyphosphate kinase middle domain IH404_RS27490 PF13089 Polyphosphate kinase N-terminal domain IH404_RS27490 PF17941 Polyphosphate kinase C-terminal domain 1 IH404_RS27495 PF00490 Delta-aminolevulinic acid dehydratase IH404_RS27500 PF09335 SNARE associated Golgi protein IH404_RS27505 PF04116 Fatty acid hydroxylase superfamily IH404_RS27515 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 IH404_RS27520 PF03239 Iron permease FTR1 family IH404_RS27525 PF01810 LysE type translocator IH404_RS27535 PF00005 ABC transporter IH404_RS27535 PF12848 ABC transporter IH404_RS27550 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase IH404_RS27550 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IH404_RS27555 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ IH404_RS27560 PF02600 Disulfide bond formation protein DsbB IH404_RS27575 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain IH404_RS27575 PF03900 Porphobilinogen deaminase, C-terminal domain IH404_RS27580 PF04397 LytTr DNA-binding domain IH404_RS27580 PF00072 Response regulator receiver domain IH404_RS27585 PF14698 Argininosuccinate lyase C-terminal IH404_RS27585 PF00206 Lyase IH404_RS27590 PF14497 Glutathione S-transferase, C-terminal domain IH404_RS27590 PF13417 Glutathione S-transferase, N-terminal domain IH404_RS27605 PF12633 Adenylate cyclase NT domain IH404_RS27605 PF01295 Adenylate cyclase, class-I IH404_RS27610 PF01272 Transcription elongation factor, GreA/GreB, C-term IH404_RS27610 PF14760 Rnk N-terminus IH404_RS27620 PF01491 Frataxin-like domain IH404_RS27625 PF13627 Prokaryotic lipoprotein-attachment site IH404_RS27630 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain IH404_RS27630 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain IH404_RS27635 PF01678 Diaminopimelate epimerase IH404_RS27645 PF02899 Phage integrase, N-terminal SAM-like domain IH404_RS27645 PF00589 Phage integrase family IH404_RS27650 PF13419 Haloacid dehalogenase-like hydrolase IH404_RS27660 PF01894 Uncharacterised protein family UPF0047 IH404_RS27665 PF00909 Ammonium Transporter Family IH404_RS27670 PF00543 Nitrogen regulatory protein P-II IH404_RS27675 PF04380 Membrane fusogenic activity IH404_RS27680 PF01078 Magnesium chelatase, subunit ChlI IH404_RS27680 PF13335 Magnesium chelatase, subunit ChlI C-terminal IH404_RS27695 PF00672 HAMP domain IH404_RS27695 PF02743 Cache domain IH404_RS27695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IH404_RS27700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IH404_RS27700 PF03466 LysR substrate binding domain IH404_RS27705 PF01554 MatE IH404_RS27710 PF03707 Bacterial signalling protein N terminal repeat IH404_RS27710 PF00990 Diguanylate cyclase, GGDEF domain IH404_RS27710 PF00563 EAL domain