locus-tag	class	description
GOM96_RS00035	COG3179	chitinase
GOM96_RS00060	COG2135	peptidase activity
GOM96_RS00090	COG0404	The glycine cleavage system catalyzes the degradation of glycine
GOM96_RS00095	COG1760	l-serine dehydratase
GOM96_RS00105	COG1115	amino acid carrier protein
GOM96_RS00110	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
GOM96_RS00110	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
GOM96_RS00150	COG4964	Belongs to the GSP D family
GOM96_RS00175	COG0455	bacterial-type flagellum organization
GOM96_RS00220	COG0297	glycogen (starch) synthase activity
GOM96_RS00240	COG0438	transferase activity, transferring glycosyl groups
GOM96_RS00255	COG3206	protein involved in exopolysaccharide biosynthesis
GOM96_RS00255	COG0489	protein tyrosine kinase activity
GOM96_RS00305	COG1028	Short-chain dehydrogenase reductase Sdr
GOM96_RS00315	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
GOM96_RS00320	COG0066	3-isopropylmalate dehydratase activity
GOM96_RS00345	COG0135	phosphoribosylanthranilate isomerase activity
GOM96_RS00350	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
GOM96_RS00355	COG0285	dihydrofolate synthase activity
GOM96_RS00365	COG1286	toxin biosynthetic process
GOM96_RS00410	COG1429	ligase activity, forming nitrogen-metal bonds
GOM96_RS00415	COG4771	TonB-dependent receptor
GOM96_RS00420	COG0254	rRNA binding
GOM96_RS00430	COG0789	Transcriptional regulator
GOM96_RS00435	COG1280	lysine exporter protein (LysE YggA)
GOM96_RS00460	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
GOM96_RS00510	COG2009	succinate dehydrogenase
GOM96_RS00515	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
GOM96_RS00520	COG1053	succinate dehydrogenase
GOM96_RS00525	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
GOM96_RS00545	COG0045	succinate-CoA ligase (ADP-forming) activity
GOM96_RS00580	COG0326	Molecular chaperone. Has ATPase activity
GOM96_RS00585	COG1960	acyl-CoA dehydrogenase activity
GOM96_RS00590	COG1024	Enoyl-CoA hydratase
GOM96_RS00645	COG0210	DNA helicase
GOM96_RS00650	COG0515	serine threonine protein kinase
GOM96_RS00660	COG2146	nitrite reductase [NAD(P)H] activity
GOM96_RS00660	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
GOM96_RS00665	COG2146	nitrite reductase [NAD(P)H] activity
GOM96_RS00665	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
GOM96_RS00670	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
GOM96_RS00685	COG4221	oxidoreductase activity
GOM96_RS00695	COG0415	Belongs to the DNA photolyase family
GOM96_RS00700	COG0789	Transcriptional regulator
GOM96_RS00705	COG3272	Protein of unknown function (DUF1722)
GOM96_RS00715	COG3380	Catalyzes the oxidation of the 1,2-dihydro- and 1,6- dihydro- isomeric forms of beta-NAD(P) back to beta-NAD(P) . May serve to protect primary metabolism dehydrogenases from inhibition by the 1,2-dihydro- and 1,6-dihydro-beta-NAD(P) isomers
GOM96_RS00720	COG1090	epimerase
GOM96_RS00725	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
GOM96_RS00730	COG5001	Diguanylate cyclase
GOM96_RS00730	COG3300	MHYT domain
GOM96_RS00735	COG1366	Belongs to the anti-sigma-factor antagonist family
GOM96_RS00755	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
GOM96_RS00760	COG0302	gtp cyclohydrolase
GOM96_RS00775	COG0789	Transcriptional regulator
GOM96_RS00795	COG0784	Response regulator, receiver
GOM96_RS00795	COG2205	protein histidine kinase activity
GOM96_RS00800	COG1271	oxidase subunit
GOM96_RS00805	COG1294	oxidase, subunit
GOM96_RS00830	COG1902	pentaerythritol trinitrate reductase activity
GOM96_RS00830	COG0446	pyridine nucleotide-disulphide oxidoreductase
GOM96_RS00855	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
GOM96_RS00865	COG0705	Rhomboid family
GOM96_RS00880	COG0308	aminopeptidase N
GOM96_RS00885	COG4447	cellulose binding
GOM96_RS00895	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
GOM96_RS00905	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
GOM96_RS00910	COG1605	Chorismate mutase
GOM96_RS00910	COG0077	Prephenate dehydratase
GOM96_RS00915	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
GOM96_RS00920	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
GOM96_RS00925	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
GOM96_RS00940	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
GOM96_RS00945	COG0625	glutathione transferase activity
GOM96_RS00950	COG0302	gtp cyclohydrolase
GOM96_RS00955	COG2840	Smr protein MutS2
GOM96_RS00985	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
GOM96_RS00995	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
GOM96_RS01015	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
GOM96_RS01030	COG0730	response to heat
GOM96_RS01035	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
GOM96_RS01040	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
GOM96_RS01045	COG3265	gluconokinase activity
GOM96_RS01075	COG0729	surface antigen
GOM96_RS01080	COG2911	Protein conserved in bacteria
GOM96_RS01085	COG1115	amino acid carrier protein
GOM96_RS01110	COG0392	lysyltransferase activity
GOM96_RS01115	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
GOM96_RS01120	COG3568	Endonuclease Exonuclease Phosphatase
GOM96_RS01135	COG0583	DNA-binding transcription factor activity
GOM96_RS01140	COG3384	dioxygenase
GOM96_RS01145	COG3038	cytochrome b561
GOM96_RS01150	COG0739	heme binding
GOM96_RS01175	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
GOM96_RS01180	COG0297	glycogen (starch) synthase activity
GOM96_RS01185	COG1546	Belongs to the CinA family
GOM96_RS01185	COG1058	Belongs to the CinA family
GOM96_RS01190	COG3685	Protein conserved in bacteria
GOM96_RS01225	COG0583	DNA-binding transcription factor activity
GOM96_RS01245	COG1566	PFAM secretion protein HlyD family protein
GOM96_RS01285	COG0840	transmembrane signaling receptor activity
GOM96_RS01320	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
GOM96_RS01325	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
GOM96_RS01330	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
GOM96_RS01335	COG0431	NADPH-dependent FMN reductase
GOM96_RS01340	COG0450	alkyl hydroperoxide reductase
GOM96_RS01355	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
GOM96_RS01360	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
GOM96_RS01375	COG5583	Uncharacterized small protein (DUF2292)
GOM96_RS01380	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
GOM96_RS01390	COG4208	sulfate ABC transporter
GOM96_RS01405	COG0586	Pfam SNARE associated Golgi protein
GOM96_RS01445	COG0183	Belongs to the thiolase family
GOM96_RS01455	COG1028	Short-chain dehydrogenase reductase Sdr
GOM96_RS01465	COG0183	Belongs to the thiolase family
GOM96_RS01470	COG1960	acyl-CoA dehydrogenase activity
GOM96_RS01475	COG1960	acyl-CoA dehydrogenase activity
GOM96_RS01480	COG1024	Enoyl-CoA hydratase
GOM96_RS01490	COG1024	Enoyl-CoA hydratase
GOM96_RS01530	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
GOM96_RS01535	COG0318	PFAM AMP-dependent synthetase and ligase
GOM96_RS01540	COG1902	pentaerythritol trinitrate reductase activity
GOM96_RS01555	COG1028	Short-chain dehydrogenase reductase Sdr
GOM96_RS01560	COG2814	Major facilitator Superfamily
GOM96_RS01565	COG0596	Alpha beta hydrolase
GOM96_RS01605	COG1960	acyl-CoA dehydrogenase activity
GOM96_RS01610	COG1960	acyl-CoA dehydrogenase activity
GOM96_RS01615	COG1053	succinate dehydrogenase
GOM96_RS01620	COG1960	acyl-CoA dehydrogenase activity
GOM96_RS01635	COG1960	acyl-CoA dehydrogenase activity
GOM96_RS01640	COG2030	dehydratase
GOM96_RS01645	COG1028	Short-chain dehydrogenase reductase Sdr
GOM96_RS01650	COG1024	Enoyl-CoA hydratase
GOM96_RS01655	COG0745	RESPONSE REGULATOR receiver
GOM96_RS01660	COG2205	protein histidine kinase activity
GOM96_RS01665	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
GOM96_RS01685	COG1960	acyl-CoA dehydrogenase activity
GOM96_RS01690	COG1960	acyl-CoA dehydrogenase activity
GOM96_RS01745	COG1012	belongs to the aldehyde dehydrogenase family
GOM96_RS01750	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
GOM96_RS01765	COG4569	acetaldehyde dehydrogenase (acetylating) activity
GOM96_RS01770	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
GOM96_RS01775	COG2814	Major facilitator Superfamily
GOM96_RS01785	COG0183	Belongs to the thiolase family
GOM96_RS01790	COG1024	Enoyl-CoA hydratase
GOM96_RS01830	COG0655	NAD(P)H dehydrogenase (quinone) activity
GOM96_RS01835	COG0583	DNA-binding transcription factor activity
GOM96_RS01875	COG0701	Predicted permease
GOM96_RS01880	COG0798	PFAM Bile acid sodium symporter
GOM96_RS01885	COG0640	Transcriptional regulator
GOM96_RS01890	COG0431	NADPH-dependent FMN reductase
GOM96_RS01895	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
GOM96_RS01905	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
GOM96_RS01910	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
GOM96_RS01925	COG5002	protein histidine kinase activity
GOM96_RS01940	COG0535	radical SAM domain protein
GOM96_RS01950	COG5424	Ring cyclization and eight-electron oxidation of 3a-(2- amino-2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline- 7,9-dicarboxylic-acid to PQQ
GOM96_RS01955	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
GOM96_RS01990	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
GOM96_RS01995	COG0167	dihydroorotate dehydrogenase activity
GOM96_RS02000	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
GOM96_RS02005	COG0366	Alpha amylase catalytic
GOM96_RS02025	COG1028	Short-chain dehydrogenase reductase Sdr
GOM96_RS02030	COG0604	alcohol dehydrogenase
GOM96_RS02030	COG1028	Short-chain dehydrogenase reductase Sdr
GOM96_RS02030	COG3321	synthase
GOM96_RS02080	COG0840	transmembrane signaling receptor activity
GOM96_RS02090	COG3278	Belongs to the heme-copper respiratory oxidase family
GOM96_RS02105	COG3278	Belongs to the heme-copper respiratory oxidase family
GOM96_RS02120	COG2010	Cytochrome c
GOM96_RS02150	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
GOM96_RS02160	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
GOM96_RS02165	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
GOM96_RS02180	COG0573	inorganic phosphate transmembrane transporter activity
GOM96_RS02195	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
GOM96_RS02200	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
GOM96_RS02215	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
GOM96_RS02235	COG0587	DNA-directed DNA polymerase activity
GOM96_RS02240	COG0488	(ABC) transporter
GOM96_RS02245	COG1968	undecaprenyl-diphosphatase activity
GOM96_RS02250	COG0840	transmembrane signaling receptor activity
GOM96_RS02265	COG2323	membrane
GOM96_RS02275	COG3706	GGDEF domain
GOM96_RS02285	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
GOM96_RS02285	COG0316	Belongs to the HesB IscA family
GOM96_RS02315	COG2223	nitrite transmembrane transporter activity
GOM96_RS02320	COG0820	rRNA (adenine-C2-)-methyltransferase activity
GOM96_RS02335	COG0071	Belongs to the small heat shock protein (HSP20) family
GOM96_RS02355	COG0604	alcohol dehydrogenase
GOM96_RS02360	COG0616	signal peptide processing
GOM96_RS02380	COG1028	Short-chain dehydrogenase reductase Sdr
GOM96_RS02395	COG2816	NAD+ diphosphatase activity
GOM96_RS02405	COG1024	Enoyl-CoA hydratase
GOM96_RS02415	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
GOM96_RS02420	COG0328	RNA-DNA hybrid ribonuclease activity
GOM96_RS02435	COG0741	lytic transglycosylase activity
GOM96_RS02435	COG1388	LysM domain
GOM96_RS02455	COG4174	ABC transporter (Permease)
GOM96_RS02460	COG4239	(ABC) transporter, permease
GOM96_RS02465	COG4172	Belongs to the ABC transporter superfamily
GOM96_RS02475	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
GOM96_RS02485	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
GOM96_RS02490	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
GOM96_RS02500	COG0544	peptidyl-prolyl cis-trans isomerase activity
GOM96_RS02505	COG3115	cell septum assembly
GOM96_RS02510	COG1196	nuclear chromosome segregation
GOM96_RS02515	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
GOM96_RS02530	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
GOM96_RS02530	COG2010	Cytochrome c
GOM96_RS02535	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
GOM96_RS02560	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
GOM96_RS02570	COG0728	peptidoglycan biosynthetic process
GOM96_RS02575	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
GOM96_RS02635	COG0840	transmembrane signaling receptor activity
GOM96_RS02655	COG1131	(ABC) transporter
GOM96_RS02675	COG3284	Transcriptional regulator
GOM96_RS02690	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
GOM96_RS02695	COG1063	alcohol dehydrogenase
GOM96_RS02700	COG0022	dehydrogenase e1 component
GOM96_RS02705	COG0508	dehydrogenase complex catalyzes the overall conversion of
GOM96_RS02710	COG0508	dehydrogenase complex catalyzes the overall conversion of
GOM96_RS02715	COG0095	Lipoate-protein ligase
GOM96_RS02735	COG1028	Short-chain dehydrogenase reductase Sdr
GOM96_RS02765	COG0861	Integral membrane protein TerC family
GOM96_RS02795	COG0247	lactate metabolic process
GOM96_RS02795	COG0277	FAD linked oxidase domain protein
GOM96_RS02805	COG2226	methyltransferase
GOM96_RS02815	COG0431	NADPH-dependent FMN reductase
GOM96_RS02870	COG1335	isochorismatase
GOM96_RS02885	COG0066	3-isopropylmalate dehydratase activity
GOM96_RS02890	COG3829	transcription factor binding
GOM96_RS02900	COG0583	DNA-binding transcription factor activity
GOM96_RS02905	COG2855	membrane
GOM96_RS02920	COG2201	protein-glutamate methylesterase activity
GOM96_RS02925	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
GOM96_RS02930	COG0835	chemotaxis
GOM96_RS02935	COG3290	protein histidine kinase activity
GOM96_RS02935	COG0840	transmembrane signaling receptor activity
GOM96_RS02940	COG2198	Histidine kinase
GOM96_RS02940	COG0643	Histidine kinase
GOM96_RS02950	COG0745	RESPONSE REGULATOR receiver
GOM96_RS02955	COG0840	transmembrane signaling receptor activity
GOM96_RS02970	COG0789	Transcriptional regulator
GOM96_RS02980	COG0477	Major facilitator Superfamily
GOM96_RS02990	COG1280	lysine exporter protein (LysE YggA)
GOM96_RS03030	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
GOM96_RS03075	COG0776	regulation of translation
GOM96_RS03080	COG0072	phenylalanine-tRNA ligase activity
GOM96_RS03085	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
GOM96_RS03090	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
GOM96_RS03095	COG0291	Belongs to the bacterial ribosomal protein bL35 family
GOM96_RS03100	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
GOM96_RS03105	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
GOM96_RS03115	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
GOM96_RS03190	COG3171	Protein conserved in bacteria
GOM96_RS03195	COG2027	D-alanyl-D-alanine carboxypeptidase
GOM96_RS03200	COG0116	Belongs to the methyltransferase superfamily
GOM96_RS03200	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
GOM96_RS03205	COG3130	regulation of translation
GOM96_RS03210	COG0167	dihydroorotate dehydrogenase activity
GOM96_RS03230	COG0714	Associated with various cellular activities
GOM96_RS03260	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
GOM96_RS03265	COG2201	protein-glutamate methylesterase activity
GOM96_RS03275	COG2223	nitrite transmembrane transporter activity
GOM96_RS03280	COG2815	serine threonine protein kinase
GOM96_RS03280	COG0515	serine threonine protein kinase
GOM96_RS03290	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
GOM96_RS03295	COG2146	nitrite reductase [NAD(P)H] activity
GOM96_RS03300	COG0243	molybdopterin cofactor binding
GOM96_RS03310	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
GOM96_RS03315	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
GOM96_RS03335	COG1034	ATP synthesis coupled electron transport
GOM96_RS03345	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
GOM96_RS03355	COG0713	ATP synthesis coupled electron transport
GOM96_RS03370	COG1007	ATP synthesis coupled electron transport
GOM96_RS03410	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
GOM96_RS03415	COG0215	cysteine-tRNA ligase activity
GOM96_RS03420	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
GOM96_RS03425	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
GOM96_RS03430	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
GOM96_RS03465	COG0668	transmembrane transport
GOM96_RS03480	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
GOM96_RS03490	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
GOM96_RS03505	COG0372	Belongs to the citrate synthase family
GOM96_RS03515	COG1802	Transcriptional regulator
GOM96_RS03540	COG0560	Phosphoserine phosphatase
GOM96_RS03555	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
GOM96_RS03560	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
GOM96_RS03575	COG1376	ErfK ybiS ycfS ynhG family protein
GOM96_RS03590	COG4181	ATPase activity
GOM96_RS03595	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
GOM96_RS03615	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
GOM96_RS03620	COG0084	hydrolase, TatD family'
GOM96_RS03645	COG0714	Associated with various cellular activities
GOM96_RS03660	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
GOM96_RS03665	COG0709	Synthesizes selenophosphate from selenide and ATP
GOM96_RS03675	COG0628	permease
GOM96_RS03685	COG0596	Alpha beta hydrolase
GOM96_RS03685	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
GOM96_RS03710	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
GOM96_RS03715	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
GOM96_RS03725	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
GOM96_RS03765	COG1024	Enoyl-CoA hydratase
GOM96_RS03790	COG0583	DNA-binding transcription factor activity
GOM96_RS03795	COG2200	EAL domain
GOM96_RS03815	COG0668	transmembrane transport
GOM96_RS03820	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
GOM96_RS03830	COG0583	DNA-binding transcription factor activity
GOM96_RS03835	COG1804	L-carnitine dehydratase bile acid-inducible protein F
GOM96_RS03840	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
GOM96_RS03870	COG2301	Belongs to the HpcH HpaI aldolase family
GOM96_RS03880	COG2079	MmgE PrpD family protein
GOM96_RS03890	COG1960	acyl-CoA dehydrogenase activity
GOM96_RS03895	COG3777	bacterial-type RNA polymerase transcription factor activity, metal ion regulated sequence-specific DNA binding
GOM96_RS03900	COG0583	DNA-binding transcription factor activity
GOM96_RS03910	COG0477	Major facilitator Superfamily
GOM96_RS03925	COG0840	transmembrane signaling receptor activity
GOM96_RS03940	COG1054	Belongs to the UPF0176 family
GOM96_RS03945	COG0271	Belongs to the BolA IbaG family
GOM96_RS03955	COG0114	fumarate hydratase activity
GOM96_RS03960	COG0183	Belongs to the thiolase family
GOM96_RS03970	COG2977	Belongs to the P-Pant transferase superfamily
GOM96_RS03975	COG2205	protein histidine kinase activity
GOM96_RS03980	COG0745	RESPONSE REGULATOR receiver
GOM96_RS03990	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
GOM96_RS04000	COG0583	DNA-binding transcription factor activity
GOM96_RS04005	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
GOM96_RS04020	COG2226	methyltransferase
GOM96_RS04040	COG0826	peptidase U32
GOM96_RS04050	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
GOM96_RS04065	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
GOM96_RS04090	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
GOM96_RS04105	COG0800	Aldolase
GOM96_RS04135	COG0395	ABC-type sugar transport system, permease component
GOM96_RS04140	COG1175	transmembrane transport
GOM96_RS04170	COG2937	Belongs to the GPAT DAPAT family
GOM96_RS04175	COG1304	FMN binding
GOM96_RS04180	COG0028	Belongs to the TPP enzyme family
GOM96_RS04185	COG3573	Dehydrogenase
GOM96_RS04205	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
GOM96_RS04220	COG0642	Histidine kinase
GOM96_RS04260	COG2132	Multicopper oxidase
GOM96_RS04280	COG2943	transferase activity, transferring hexosyl groups
GOM96_RS04310	COG1346	cytolysis
GOM96_RS04325	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
GOM96_RS04350	COG1309	transcriptional regulator
GOM96_RS04355	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
GOM96_RS04360	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
GOM96_RS04370	COG0742	ribosomal rna small subunit methyltransferase
GOM96_RS04395	COG0563	adenylate kinase activity
GOM96_RS04400	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
GOM96_RS04440	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
GOM96_RS04450	COG2979	Protein of unknown function (DUF533)
GOM96_RS04455	COG1902	pentaerythritol trinitrate reductase activity
GOM96_RS04460	COG0243	molybdopterin cofactor binding
GOM96_RS04465	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
GOM96_RS04485	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
GOM96_RS04495	COG3842	ATPase activity
GOM96_RS04500	COG0590	tRNA wobble adenosine to inosine editing
GOM96_RS04505	COG2132	Multicopper oxidase
GOM96_RS04510	COG0518	GMP synthase (glutamine-hydrolyzing) activity
GOM96_RS04510	COG0519	Catalyzes the synthesis of GMP from XMP
GOM96_RS04525	COG1570	exodeoxyribonuclease VII activity
GOM96_RS04545	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
GOM96_RS04550	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
GOM96_RS04565	COG3380	Catalyzes the oxidation of the 1,2-dihydro- and 1,6- dihydro- isomeric forms of beta-NAD(P) back to beta-NAD(P) . May serve to protect primary metabolism dehydrogenases from inhibition by the 1,2-dihydro- and 1,6-dihydro-beta-NAD(P) isomers
GOM96_RS04590	COG4591	ABC-type transport system involved in lipoprotein release permease component
GOM96_RS04595	COG1136	(ABC) transporter
GOM96_RS04630	COG0640	Transcriptional regulator
GOM96_RS04655	COG0625	glutathione transferase activity
GOM96_RS04665	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
GOM96_RS04670	COG0436	Aminotransferase
GOM96_RS04680	COG0501	Belongs to the peptidase M48B family
GOM96_RS04690	COG0500	methyltransferase
GOM96_RS04740	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
GOM96_RS04760	COG4133	protoheme IX ABC transporter activity
GOM96_RS04785	COG0835	chemotaxis
GOM96_RS04795	COG1192	Involved in chromosome partitioning
GOM96_RS04800	COG1360	Flagellar Motor Protein
GOM96_RS04805	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
GOM96_RS04810	COG2201	protein-glutamate methylesterase activity
GOM96_RS04815	COG0643	Histidine kinase
GOM96_RS04815	COG0784	Response regulator, receiver
GOM96_RS04815	COG2198	Histidine kinase
GOM96_RS04820	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
GOM96_RS04845	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
GOM96_RS04850	COG2032	superoxide dismutase activity
GOM96_RS04865	COG1987	bacterial-type flagellum assembly
GOM96_RS04905	COG0745	RESPONSE REGULATOR receiver
GOM96_RS04940	COG1677	Flagellar hook-basal body complex protein FliE
GOM96_RS04945	COG3135	benzoate transporter
GOM96_RS04955	COG2130	NADP-dependent
GOM96_RS04970	COG5001	Diguanylate cyclase
GOM96_RS04970	COG3300	MHYT domain
GOM96_RS04980	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
GOM96_RS05035	COG1113	amino acid transport
GOM96_RS05040	COG0084	hydrolase, TatD family'
GOM96_RS05055	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
GOM96_RS05060	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
GOM96_RS05070	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
GOM96_RS05075	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
GOM96_RS05090	COG0416	fatty acid biosynthetic process
GOM96_RS05095	COG0333	Belongs to the bacterial ribosomal protein bL32 family
GOM96_RS05105	COG0424	maF-like protein
GOM96_RS05110	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
GOM96_RS05110	COG0616	signal peptide processing
GOM96_RS05115	COG0546	phosphoglycolate phosphatase activity
GOM96_RS05125	COG1530	ribonuclease E activity
GOM96_RS05130	COG0069	glutamate synthase activity
GOM96_RS05135	COG0812	UDP-N-acetylmuramate dehydrogenase activity
GOM96_RS05140	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
GOM96_RS05145	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
GOM96_RS05150	COG2835	tetraacyldisaccharide 4'-kinase activity
GOM96_RS05155	COG1663	tetraacyldisaccharide 4'-kinase activity
GOM96_RS05160	COG0848	biopolymer transport protein
GOM96_RS05165	COG0811	peptide transport
GOM96_RS05185	COG1136	(ABC) transporter
GOM96_RS05190	COG4591	ABC-type transport system involved in lipoprotein release permease component
GOM96_RS05205	COG0584	glycerophosphoryl diester phosphodiesterase
GOM96_RS05210	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
GOM96_RS05220	COG1477	protein flavinylation
GOM96_RS05245	COG1805	sodium ion transport
GOM96_RS05260	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
GOM96_RS05270	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
GOM96_RS05280	COG1793	dna ligase
GOM96_RS05280	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
GOM96_RS05285	COG1793	dna ligase
GOM96_RS05290	COG1201	RNA secondary structure unwinding
GOM96_RS05315	COG3956	TIGRFAM MazG family protein
GOM96_RS05320	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
GOM96_RS05325	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
GOM96_RS05335	COG2860	membrane
GOM96_RS05340	COG5002	protein histidine kinase activity
GOM96_RS05340	COG2205	protein histidine kinase activity
GOM96_RS05340	COG0784	Response regulator, receiver
GOM96_RS05345	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
GOM96_RS05345	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
GOM96_RS05365	COG0583	DNA-binding transcription factor activity
GOM96_RS05370	COG0367	asparagine synthase
GOM96_RS05375	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
GOM96_RS05375	COG0189	ligase activity
GOM96_RS05380	COG1363	Peptidase, m42
GOM96_RS05385	COG2205	protein histidine kinase activity
GOM96_RS05385	COG0784	Response regulator, receiver
GOM96_RS05385	COG5002	protein histidine kinase activity
GOM96_RS05390	COG3089	Belongs to the UPF0270 family
GOM96_RS05415	COG3162	membrane
GOM96_RS05425	COG2853	Lipoprotein
GOM96_RS05430	COG1560	Kdo2-lipid A biosynthetic process
GOM96_RS05435	COG0850	regulation of cytokinetic process
GOM96_RS05440	COG2894	cell division
GOM96_RS05445	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
GOM96_RS05450	COG0564	pseudouridine synthase activity
GOM96_RS05455	COG1362	aminopeptidase activity
GOM96_RS05490	COG1555	photosystem II stabilization
GOM96_RS05500	COG1256	bacterial-type flagellum assembly
GOM96_RS05510	COG1706	bacterial-type flagellum-dependent cell motility
GOM96_RS05515	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
GOM96_RS05520	COG4786	Flagellar basal body rod
GOM96_RS05525	COG4787	bacterial-type flagellum-dependent cell motility
GOM96_RS05550	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
GOM96_RS05555	COG0784	Response regulator, receiver
GOM96_RS05555	COG0835	chemotaxis
GOM96_RS05575	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
GOM96_RS05600	COG2239	Acts as a magnesium transporter
GOM96_RS05625	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
GOM96_RS05630	COG0527	aspartate kinase activity
GOM96_RS05635	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
GOM96_RS05645	COG2983	Belongs to the UPF0260 family
GOM96_RS05655	COG3100	YcgL domain-containing protein
GOM96_RS05670	COG2067	long-chain fatty acid transport protein
GOM96_RS05700	COG2733	membrane
GOM96_RS05720	COG0537	adenosine 5'-monophosphoramidase activity
GOM96_RS05725	COG2258	MOSC domain
GOM96_RS05730	COG0037	tRNA processing
GOM96_RS05750	COG3091	SprT-like family
GOM96_RS05755	COG4459	periplasmic nitrate reductase
GOM96_RS05760	COG3062	negative regulation of establishment of protein localization
GOM96_RS05765	COG0243	molybdopterin cofactor binding
GOM96_RS05770	COG3043	anaerobic respiration
GOM96_RS05775	COG3005	denitrification pathway
GOM96_RS05795	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
GOM96_RS05825	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
GOM96_RS05850	COG0545	Peptidyl-prolyl cis-trans isomerase
GOM96_RS05865	COG2974	May be involved in recombination
GOM96_RS05870	COG2814	Major facilitator Superfamily
GOM96_RS05890	COG0784	Response regulator, receiver
GOM96_RS05890	COG2205	protein histidine kinase activity
GOM96_RS05895	COG3174	membrane
GOM96_RS05925	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
GOM96_RS05930	COG0417	DNA replication proofreading
GOM96_RS05940	COG1335	isochorismatase
GOM96_RS05950	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
GOM96_RS05960	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
GOM96_RS05970	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
GOM96_RS05975	COG0425	Belongs to the sulfur carrier protein TusA family
GOM96_RS05985	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
GOM96_RS05995	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
GOM96_RS06000	COG0602	queuosine metabolic process
GOM96_RS06005	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
GOM96_RS06010	COG2885	chlorophyll binding
GOM96_RS06015	COG0823	Involved in the tonB-independent uptake of proteins
GOM96_RS06035	COG0824	Thioesterase
GOM96_RS06040	COG2255	four-way junction helicase activity
GOM96_RS06045	COG0632	four-way junction helicase activity
GOM96_RS06050	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
GOM96_RS06060	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
GOM96_RS06065	COG0783	Belongs to the Dps family
GOM96_RS06070	COG1278	Cold shock
GOM96_RS06075	COG2900	Belongs to the SlyX family
GOM96_RS06090	COG0442	prolyl-tRNA aminoacylation
GOM96_RS06105	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
GOM96_RS06120	COG1295	ribonuclease BN
GOM96_RS06165	COG0402	S-adenosylhomocysteine deaminase activity
GOM96_RS06170	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
GOM96_RS06185	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
GOM96_RS06215	COG2351	hydroxyisourate hydrolase activity
GOM96_RS06220	COG0583	DNA-binding transcription factor activity
GOM96_RS06225	COG3960	tartronate-semialdehyde synthase activity
GOM96_RS06230	COG3622	Belongs to the hyi family
GOM96_RS06235	COG2084	Dehydrogenase
GOM96_RS06245	COG0469	pyruvate kinase activity
GOM96_RS06250	COG4413	Urea transporter
GOM96_RS06260	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
GOM96_RS06260	COG1017	nitric oxide dioxygenase activity
GOM96_RS06275	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
GOM96_RS06280	COG3706	GGDEF domain
GOM96_RS06285	COG4625	pathogenesis
GOM96_RS06285	COG3240	lipase activity
GOM96_RS06295	COG0583	DNA-binding transcription factor activity
GOM96_RS06310	COG3300	MHYT domain
GOM96_RS06310	COG5001	Diguanylate cyclase
GOM96_RS06320	COG1704	LemA family
GOM96_RS06355	COG0459	protein refolding
GOM96_RS06360	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
GOM96_RS06365	COG3030	protein affecting phage T7 exclusion by the F plasmid
GOM96_RS06375	COG1028	Short-chain dehydrogenase reductase Sdr
GOM96_RS06395	COG0668	transmembrane transport
GOM96_RS06400	COG1666	GTP binding
GOM96_RS06420	COG2096	Adenosyltransferase
GOM96_RS06450	COG0494	nUDIX hydrolase
GOM96_RS06455	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
GOM96_RS06460	COG0653	protein targeting
GOM96_RS06500	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
GOM96_RS06505	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
GOM96_RS06525	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
GOM96_RS06530	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
GOM96_RS06540	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
GOM96_RS06545	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
GOM96_RS06555	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
GOM96_RS06560	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
GOM96_RS06580	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
GOM96_RS06595	COG1960	acyl-CoA dehydrogenase activity
GOM96_RS06600	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
GOM96_RS06605	COG1024	Enoyl-CoA hydratase
GOM96_RS06635	COG0789	Transcriptional regulator
GOM96_RS06650	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
GOM96_RS06665	COG0697	spore germination
GOM96_RS06670	COG0288	reversible hydration of carbon dioxide
GOM96_RS06675	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
GOM96_RS06680	COG1877	trehalose-phosphatase activity
GOM96_RS06690	COG0456	acetyltransferase
GOM96_RS06700	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
GOM96_RS06710	COG0019	diaminopimelate decarboxylase activity
GOM96_RS06730	COG3008	intermembrane lipid transfer
GOM96_RS06735	COG2995	paraquat-inducible protein a
GOM96_RS06740	COG2995	paraquat-inducible protein a
GOM96_RS06770	COG1183	phosphatidylcholine synthase activity
GOM96_RS06775	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
GOM96_RS06785	COG0028	Belongs to the TPP enzyme family
GOM96_RS06795	COG3098	single-species biofilm formation
GOM96_RS06805	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
GOM96_RS06840	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
GOM96_RS06855	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
GOM96_RS06870	COG2264	protein methyltransferase activity
GOM96_RS06880	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
GOM96_RS06890	COG0138	bifunctional purine biosynthesis protein purh
GOM96_RS06925	COG0436	Aminotransferase
GOM96_RS06930	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
GOM96_RS06935	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
GOM96_RS06945	COG4191	Histidine kinase
GOM96_RS06965	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
GOM96_RS06970	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
GOM96_RS06975	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
GOM96_RS06985	COG0166	Belongs to the GPI family
GOM96_RS07010	COG1185	polyribonucleotide nucleotidyltransferase activity
GOM96_RS07015	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
GOM96_RS07020	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
GOM96_RS07025	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
GOM96_RS07030	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
GOM96_RS07035	COG0195	Participates in both transcription termination and antitermination
GOM96_RS07035	COG2251	uridine kinase activity
GOM96_RS07040	COG0779	Required for maturation of 30S ribosomal subunits
GOM96_RS07055	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
GOM96_RS07060	COG0149	triose-phosphate isomerase activity
GOM96_RS07065	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
GOM96_RS07070	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
GOM96_RS07075	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
GOM96_RS07105	COG0505	Belongs to the CarA family
GOM96_RS07110	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
GOM96_RS07115	COG0484	heat shock protein binding
GOM96_RS07120	COG0443	Heat shock 70 kDa protein
GOM96_RS07125	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
GOM96_RS07130	COG0497	DNA recombination
GOM96_RS07145	COG2914	Belongs to the UPF0125 (RnfH) family
GOM96_RS07155	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
GOM96_RS07165	COG1620	l-lactate permease
GOM96_RS07170	COG0247	lactate metabolic process
GOM96_RS07200	COG3842	ATPase activity
GOM96_RS07205	COG0366	Alpha amylase catalytic
GOM96_RS07220	COG3833	ABC-type maltose transport systems, permease component
GOM96_RS07225	COG1175	transmembrane transport
GOM96_RS07250	COG4580	involved in the transport of maltose and maltodextrins
GOM96_RS07260	COG0517	IMP dehydrogenase activity
GOM96_RS07260	COG0516	GMP reductase activity
GOM96_RS07275	COG0800	Aldolase
GOM96_RS07290	COG1737	Transcriptional regulator
GOM96_RS07310	COG2814	Major facilitator Superfamily
GOM96_RS07340	COG2610	gluconate transmembrane transporter activity
GOM96_RS07345	COG1028	Short-chain dehydrogenase reductase Sdr
GOM96_RS07350	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
GOM96_RS07355	COG1040	competence protein
GOM96_RS07415	COG0420	3'-5' exonuclease activity
GOM96_RS07425	COG3038	cytochrome b561
GOM96_RS07430	COG0303	'Molybdopterin
GOM96_RS07435	COG0521	Mo-molybdopterin cofactor biosynthetic process
GOM96_RS07440	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
GOM96_RS07455	COG2181	nitrate reductase activity
GOM96_RS07460	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
GOM96_RS07465	COG1140	nitrate reductase beta subunit
GOM96_RS07470	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
GOM96_RS07475	COG2223	nitrite transmembrane transporter activity
GOM96_RS07485	COG3850	Histidine kinase
GOM96_RS07490	COG2197	response regulator
GOM96_RS07505	COG2321	neutral zinc metallopeptidase
GOM96_RS07515	COG1946	Acyl-CoA thioesterase
GOM96_RS07520	COG0123	including yeast histone deacetylase and acetoin utilization protein
GOM96_RS07530	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
GOM96_RS07530	COG2169	Transcriptional regulator
GOM96_RS07540	COG0084	hydrolase, TatD family'
GOM96_RS07555	COG3023	N-Acetylmuramoyl-L-alanine amidase
GOM96_RS07560	COG1515	deoxyribonuclease V activity
GOM96_RS07570	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
GOM96_RS07575	COG0180	Tryptophanyl-tRNA synthetase
GOM96_RS07580	COG2945	thiolester hydrolase activity
GOM96_RS07675	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
GOM96_RS07680	COG0305	Participates in initiation and elongation during chromosome replication
GOM96_RS07685	COG0359	binds to the 23S rRNA
GOM96_RS07695	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
GOM96_RS07700	COG0360	Binds together with S18 to 16S ribosomal RNA
GOM96_RS07710	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
GOM96_RS07715	COG0557	exoribonuclease II activity
GOM96_RS07730	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
GOM96_RS07735	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
GOM96_RS07740	COG0330	HflC and HflK could
GOM96_RS07745	COG0330	HflC and HflK could
GOM96_RS07750	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
GOM96_RS07755	COG1923	regulation of RNA biosynthetic process
GOM96_RS07760	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
GOM96_RS07765	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
GOM96_RS07770	COG0860	N-Acetylmuramoyl-L-alanine amidase
GOM96_RS07775	COG0802	atpase or kinase
GOM96_RS07780	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
GOM96_RS07780	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
GOM96_RS07805	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
GOM96_RS07815	COG0531	amino acid
GOM96_RS07820	COG4303	Ethanolamine ammonia lyase large subunit
GOM96_RS07840	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
GOM96_RS07845	COG1595	DNA-templated transcription, initiation
GOM96_RS07850	COG3228	Belongs to the MtfA family
GOM96_RS07865	COG5001	Diguanylate cyclase
GOM96_RS07870	COG0730	response to heat
GOM96_RS07875	COG1722	exodeoxyribonuclease VII activity
GOM96_RS07880	COG0142	geranyltranstransferase activity
GOM96_RS07885	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
GOM96_RS07905	COG1028	Short-chain dehydrogenase reductase Sdr
GOM96_RS07915	COG1643	Atp-dependent helicase
GOM96_RS07930	COG1522	sequence-specific DNA binding
GOM96_RS07960	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
GOM96_RS07970	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
GOM96_RS07990	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
GOM96_RS07995	COG0427	acetyl-CoA hydrolase
GOM96_RS08000	COG1960	acyl-CoA dehydrogenase activity
GOM96_RS08005	COG4999	Histidine kinase
GOM96_RS08005	COG3850	Histidine kinase
GOM96_RS08005	COG2205	protein histidine kinase activity
GOM96_RS08005	COG3437	response regulator, receiver
GOM96_RS08010	COG0352	thiamine-phosphate diphosphorylase activity
GOM96_RS08010	COG0351	phosphomethylpyrimidine kinase
GOM96_RS08015	COG0352	thiamine-phosphate diphosphorylase activity
GOM96_RS08020	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
GOM96_RS08030	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
GOM96_RS08035	COG1702	phosphate starvation-inducible protein PhoH
GOM96_RS08040	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
GOM96_RS08045	COG4535	Mg2 and Co2 transporter CorC
GOM96_RS08050	COG0815	Transfers the fatty acyl group on membrane lipoproteins
GOM96_RS08065	COG0495	leucyl-tRNA aminoacylation
GOM96_RS08085	COG2951	lytic endotransglycosylase activity
GOM96_RS08095	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
GOM96_RS08100	COG0321	lipoyl(octanoyl) transferase activity
GOM96_RS08105	COG2921	Belongs to the UPF0250 family
GOM96_RS08110	COG1686	Belongs to the peptidase S11 family
GOM96_RS08120	COG2951	lytic endotransglycosylase activity
GOM96_RS08125	COG0772	Belongs to the SEDS family
GOM96_RS08130	COG0768	penicillin binding
GOM96_RS08135	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
GOM96_RS08145	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
GOM96_RS08150	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
GOM96_RS08155	COG0586	Pfam SNARE associated Golgi protein
GOM96_RS08165	COG1346	cytolysis
GOM96_RS08185	COG0702	epimerase
GOM96_RS08190	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
GOM96_RS08200	COG1162	GTPase activity
GOM96_RS08225	COG0688	phosphatidylethanolamine metabolic process
GOM96_RS08235	COG5001	Diguanylate cyclase
GOM96_RS08235	COG5002	protein histidine kinase activity
GOM96_RS08240	COG1063	alcohol dehydrogenase
GOM96_RS08245	COG0560	Phosphoserine phosphatase
GOM96_RS08245	COG3830	Belongs to the UPF0237 family
GOM96_RS08265	COG3577	Aspartyl protease
GOM96_RS08280	COG3150	esterase
GOM96_RS08285	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
GOM96_RS08295	COG0494	nUDIX hydrolase
GOM96_RS08305	COG1758	RNA polymerase activity
GOM96_RS08310	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
GOM96_RS08330	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
GOM96_RS08340	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
GOM96_RS08345	COG1704	LemA family
GOM96_RS08350	COG0583	DNA-binding transcription factor activity
GOM96_RS08355	COG0604	alcohol dehydrogenase
GOM96_RS08360	COG1804	L-carnitine dehydratase bile acid-inducible protein F
GOM96_RS08365	COG1960	acyl-CoA dehydrogenase activity
GOM96_RS08370	COG0583	DNA-binding transcription factor activity
GOM96_RS08395	COG1620	l-lactate permease
GOM96_RS08400	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
GOM96_RS08405	COG3193	protein, possibly involved in utilization of glycolate and propanediol
GOM96_RS08410	COG0247	lactate metabolic process
GOM96_RS08415	COG0277	FAD linked oxidase domain protein
GOM96_RS08420	COG0277	FAD linked oxidase domain protein
GOM96_RS08425	COG2186	Transcriptional regulator
GOM96_RS08430	COG5001	Diguanylate cyclase
GOM96_RS08430	COG4251	negative regulation of phosphorylation
GOM96_RS08430	COG2203	Gaf domain
GOM96_RS08430	COG3706	GGDEF domain
GOM96_RS08440	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
GOM96_RS08455	COG1253	flavin adenine dinucleotide binding
GOM96_RS08460	COG0739	heme binding
GOM96_RS08475	COG1192	Involved in chromosome partitioning
GOM96_RS08495	COG0559	Belongs to the binding-protein-dependent transport system permease family
GOM96_RS08505	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
GOM96_RS08510	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
GOM96_RS08515	COG0730	response to heat
GOM96_RS08525	COG0667	Aldo Keto reductase
GOM96_RS08535	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
GOM96_RS08535	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
GOM96_RS08550	COG1132	(ABC) transporter
GOM96_RS08570	COG3562	capsule polysaccharide
GOM96_RS08580	COG1215	transferase activity, transferring glycosyl groups
GOM96_RS08585	COG2192	nodulation
GOM96_RS08595	COG3642	lipopolysaccharide core region biosynthetic process
GOM96_RS08610	COG0438	transferase activity, transferring glycosyl groups
GOM96_RS08620	COG0859	PFAM glycosyl transferase family 9
GOM96_RS08630	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
GOM96_RS08655	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
GOM96_RS08660	COG1960	acyl-CoA dehydrogenase activity
GOM96_RS08665	COG1960	acyl-CoA dehydrogenase activity
GOM96_RS08685	COG2226	methyltransferase
GOM96_RS08685	COG1073	alpha beta
GOM96_RS08690	COG0156	8-amino-7-oxononanoate synthase activity
GOM96_RS08695	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
GOM96_RS08700	COG1040	competence protein
GOM96_RS08710	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
GOM96_RS08725	COG1960	acyl-CoA dehydrogenase activity
GOM96_RS08730	COG3263	regulation of cellular component size
GOM96_RS08735	COG1196	nuclear chromosome segregation
GOM96_RS08735	COG3264	Mechanosensitive ion channel
GOM96_RS08740	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
GOM96_RS08755	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
GOM96_RS08800	COG0840	transmembrane signaling receptor activity
GOM96_RS08820	COG2197	response regulator
GOM96_RS08860	COG3383	formate dehydrogenase (NAD+) activity
GOM96_RS08865	COG4807	Protein conserved in bacteria
GOM96_RS08875	COG1773	rubredoxin
GOM96_RS08875	COG0426	domain, Protein
GOM96_RS08880	COG3604	Transcriptional regulator
GOM96_RS08890	COG0840	transmembrane signaling receptor activity
GOM96_RS08900	COG1217	gtp-binding protein TYPA
GOM96_RS08905	COG0301	tRNA thio-modification
GOM96_RS08905	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
GOM96_RS08925	COG3852	Histidine kinase
GOM96_RS08950	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
GOM96_RS08965	COG2226	methyltransferase
GOM96_RS08975	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
GOM96_RS08980	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
GOM96_RS08985	COG0140	phosphoribosyl-ATP diphosphatase activity
GOM96_RS08990	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
GOM96_RS08995	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
GOM96_RS09015	COG1490	D-aminoacyl-tRNA deacylase activity
GOM96_RS09025	COG3040	lipid binding
GOM96_RS09040	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
GOM96_RS09045	COG0058	SHG alpha-glucan phosphorylase activity
GOM96_RS09060	COG1218	3'(2'),5'-bisphosphate nucleotidase
GOM96_RS09065	COG0494	nUDIX hydrolase
GOM96_RS09070	COG1011	Hydrolase
GOM96_RS09075	COG4191	Histidine kinase
GOM96_RS09075	COG0784	Response regulator, receiver
GOM96_RS09085	COG0824	Thioesterase
GOM96_RS09090	COG1454	alcohol dehydrogenase
GOM96_RS09095	COG1960	acyl-CoA dehydrogenase activity
GOM96_RS09100	COG1250	3-hydroxyacyl-CoA dehydrogenase
GOM96_RS09100	COG1024	Enoyl-CoA hydratase
GOM96_RS09110	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
GOM96_RS09115	COG0840	transmembrane signaling receptor activity
GOM96_RS09120	COG0778	Nitroreductase
GOM96_RS09135	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
GOM96_RS09140	COG4067	protein conserved in archaea
GOM96_RS09140	COG0189	ligase activity
GOM96_RS09145	COG0189	ligase activity
GOM96_RS09160	COG2183	response to ionizing radiation
GOM96_RS09170	COG2918	glutathione biosynthetic process
GOM96_RS09185	COG0306	phosphate transporter
GOM96_RS09190	COG1392	Phosphate transport regulator
GOM96_RS09195	COG0306	phosphate transporter
GOM96_RS09205	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
GOM96_RS09225	COG0584	glycerophosphoryl diester phosphodiesterase
GOM96_RS09230	COG2233	PERMEase
GOM96_RS09240	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
GOM96_RS09245	COG0704	Plays a role in the regulation of phosphate uptake
GOM96_RS09250	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
GOM96_RS09255	COG0581	inorganic phosphate transmembrane transporter activity
GOM96_RS09275	COG5001	Diguanylate cyclase
GOM96_RS09275	COG5002	protein histidine kinase activity
GOM96_RS09275	COG3447	MASE1 domain protein
GOM96_RS09290	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
GOM96_RS09295	COG1074	ATP-dependent DNA helicase activity
GOM96_RS09300	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
GOM96_RS09315	COG2358	TRAP transporter, solute receptor (TAXI family
GOM96_RS09320	COG0840	transmembrane signaling receptor activity
GOM96_RS09355	COG3180	Ammonia monooxygenase
GOM96_RS09360	COG0700	Nucleoside recognition
GOM96_RS09380	COG2204	response regulator
GOM96_RS09385	COG5002	protein histidine kinase activity
GOM96_RS09390	COG3023	N-Acetylmuramoyl-L-alanine amidase
GOM96_RS09415	COG0218	Necessary for normal cell division and for the maintenance of normal septation
GOM96_RS09430	COG1178	ABC-type Fe3 transport system permease component
GOM96_RS09440	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
GOM96_RS09445	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
GOM96_RS09450	COG0006	proline dipeptidase activity
GOM96_RS09455	COG3079	Belongs to the UPF0149 family
GOM96_RS09475	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
GOM96_RS09495	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
GOM96_RS09505	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
GOM96_RS09510	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
GOM96_RS09515	COG4942	peptidase
GOM96_RS09520	COG0793	Belongs to the peptidase S41A family
GOM96_RS09525	COG2861	carbohydrate metabolic process
GOM96_RS09535	COG0330	HflC and HflK could
GOM96_RS09545	COG0107	imidazoleglycerol-phosphate synthase activity
GOM96_RS09550	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
GOM96_RS09560	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
GOM96_RS09565	COG0131	Imidazoleglycerol-phosphate dehydratase
GOM96_RS09580	COG1194	a g-specific adenine glycosylase
GOM96_RS09585	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
GOM96_RS09625	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
GOM96_RS09640	COG4941	Belongs to the sigma-70 factor family
GOM96_RS09645	COG3795	YCII-related domain
GOM96_RS09665	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
GOM96_RS09670	COG1127	ABC transporter
GOM96_RS09685	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
GOM96_RS09690	COG0842	Transport permease protein
GOM96_RS09690	COG1129	ABC transporter
GOM96_RS09695	COG0842	Transport permease protein
GOM96_RS09765	COG1177	transmembrane transport
GOM96_RS09770	COG1176	ABC-type spermidine putrescine transport system, permease component I
GOM96_RS09775	COG3842	ATPase activity
GOM96_RS09795	COG0174	glutamine synthetase
GOM96_RS09800	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
GOM96_RS09805	COG0174	glutamine synthetase
GOM96_RS09815	COG2957	Belongs to the agmatine deiminase family
GOM96_RS09820	COG3706	GGDEF domain
GOM96_RS09825	COG4191	Histidine kinase
GOM96_RS09830	COG0745	RESPONSE REGULATOR receiver
GOM96_RS09835	COG5002	protein histidine kinase activity
GOM96_RS09840	COG0745	RESPONSE REGULATOR receiver
GOM96_RS09850	COG5002	protein histidine kinase activity
GOM96_RS09855	COG0745	RESPONSE REGULATOR receiver
GOM96_RS09875	COG1012	belongs to the aldehyde dehydrogenase family
GOM96_RS09880	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
GOM96_RS09885	COG0267	Belongs to the bacterial ribosomal protein bL33 family
GOM96_RS09890	COG0227	Belongs to the bacterial ribosomal protein bL28 family
GOM96_RS09910	COG1960	acyl-CoA dehydrogenase activity
GOM96_RS09915	COG1960	acyl-CoA dehydrogenase activity
GOM96_RS09920	COG1024	Enoyl-CoA hydratase
GOM96_RS09920	COG1250	3-hydroxyacyl-CoA dehydrogenase
GOM96_RS09935	COG3909	cytochrome
GOM96_RS09950	COG3706	GGDEF domain
GOM96_RS09955	COG0835	chemotaxis
GOM96_RS09955	COG0784	Response regulator, receiver
GOM96_RS09980	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
GOM96_RS10000	COG3052	prosthetic group binding
GOM96_RS10005	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
GOM96_RS10015	COG4221	oxidoreductase activity
GOM96_RS10025	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
GOM96_RS10030	COG3639	organic phosphonate transmembrane transporter activity
GOM96_RS10035	COG2188	Transcriptional regulator
GOM96_RS10040	COG3624	Phosphonate C-P lyase system protein PhnG
GOM96_RS10050	COG3626	phosphonate metabolism
GOM96_RS10055	COG3627	carbon phosphorus lyase activity
GOM96_RS10060	COG4107	phosphonate C-P lyase system protein PhnK
GOM96_RS10065	COG4778	phosphonate C-P lyase system protein PhnL
GOM96_RS10070	COG3454	Phosphonate metabolism
GOM96_RS10080	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
GOM96_RS10090	COG2358	TRAP transporter, solute receptor (TAXI family
GOM96_RS10120	COG1595	DNA-templated transcription, initiation
GOM96_RS10135	COG0523	cobalamin synthesis protein
GOM96_RS10160	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
GOM96_RS10195	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
GOM96_RS10200	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
GOM96_RS10235	COG0109	protoheme IX farnesyltransferase activity
GOM96_RS10270	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
GOM96_RS10275	COG3360	Dodecin
GOM96_RS10280	COG4249	Peptidase C14 caspase catalytic subunit p20
GOM96_RS10295	COG0133	tryptophan synthase activity
GOM96_RS10300	COG0159	tryptophan synthase activity
GOM96_RS10305	COG0625	glutathione transferase activity
GOM96_RS10315	COG1132	(ABC) transporter
GOM96_RS10330	COG0583	DNA-binding transcription factor activity
GOM96_RS10355	COG0500	methyltransferase
GOM96_RS10360	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
GOM96_RS10365	COG1349	DNA-binding transcription factor activity
GOM96_RS10370	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
GOM96_RS10375	COG0355	proton-transporting ATP synthase activity, rotational mechanism
GOM96_RS10380	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
GOM96_RS10385	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
GOM96_RS10390	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
GOM96_RS10395	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
GOM96_RS10400	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
GOM96_RS10410	COG0356	it plays a direct role in the translocation of protons across the membrane
GOM96_RS10420	COG1475	DNA binding
GOM96_RS10425	COG1192	Involved in chromosome partitioning
GOM96_RS10430	COG0357	Ribosomal RNA small subunit methyltransferase G
GOM96_RS10435	COG0445	tRNA wobble uridine modification
GOM96_RS10440	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
GOM96_RS10445	COG0706	membrane insertase activity
GOM96_RS10450	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
GOM96_RS10455	COG0594	ribonuclease P activity
GOM96_RS10460	COG0230	Belongs to the bacterial ribosomal protein bL34 family
GOM96_RS10465	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
GOM96_RS10475	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
GOM96_RS10490	COG3706	GGDEF domain
GOM96_RS10505	COG0751	glycine-tRNA ligase activity
GOM96_RS10510	COG0752	glycyl-tRNA synthetase alpha subunit
GOM96_RS10515	COG2818	Glycosylase
GOM96_RS10535	COG0569	domain protein
GOM96_RS10540	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
GOM96_RS10545	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
GOM96_RS10550	COG0242	peptide deformylase activity
GOM96_RS10560	COG0758	DNA mediated transformation
GOM96_RS10565	COG0009	L-threonylcarbamoyladenylate synthase
GOM96_RS10575	COG0408	coproporphyrinogen oxidase activity
GOM96_RS10580	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
GOM96_RS10595	COG1686	Belongs to the peptidase S11 family
GOM96_RS10635	COG2011	ABC-type metal ion transport system permease component
GOM96_RS10650	COG1451	nucleotide metabolic process
GOM96_RS10655	COG1108	ABC-type Mn2 Zn2 transport systems permease components
GOM96_RS10660	COG1121	(ABC) transporter
GOM96_RS10665	COG0735	belongs to the Fur family
GOM96_RS10670	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
GOM96_RS10675	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
GOM96_RS10685	COG1611	Belongs to the LOG family
GOM96_RS10750	COG2207	Transcriptional regulator
GOM96_RS10760	COG2249	NAD(P)H dehydrogenase (quinone) activity
GOM96_RS10830	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
GOM96_RS10835	COG0583	DNA-binding transcription factor activity
GOM96_RS10840	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
GOM96_RS10895	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
GOM96_RS10905	COG1987	bacterial-type flagellum assembly
GOM96_RS10915	COG1776	CheC inhibitor of MCP methylation
GOM96_RS10915	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
GOM96_RS10935	COG1766	The M ring may be actively involved in energy transduction
GOM96_RS10940	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
GOM96_RS10970	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
GOM96_RS10995	COG1191	sigma factor activity
GOM96_RS11000	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
GOM96_RS11020	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
GOM96_RS11030	COG1815	bacterial-type flagellum-dependent cell motility
GOM96_RS11035	COG1558	bacterial-type flagellum-dependent cell motility
GOM96_RS11040	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
GOM96_RS11050	COG4787	bacterial-type flagellum-dependent cell motility
GOM96_RS11055	COG4786	Flagellar basal body rod
GOM96_RS11065	COG1706	bacterial-type flagellum-dependent cell motility
GOM96_RS11075	COG1256	bacterial-type flagellum assembly
GOM96_RS11075	COG4786	Flagellar basal body rod
GOM96_RS11080	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
GOM96_RS11150	COG2204	response regulator
GOM96_RS11205	COG0676	glucose-6-phosphate 1-epimerase activity
GOM96_RS11210	COG2204	response regulator
GOM96_RS11220	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
GOM96_RS11230	COG0509	glycine decarboxylation via glycine cleavage system
GOM96_RS11320	COG3276	selenocysteine insertion sequence binding
GOM96_RS11325	COG1921	L-seryl-tRNASec selenium transferase activity
GOM96_RS11330	COG3058	Necessary for formate dehydrogenase activity
GOM96_RS11335	COG2864	formate dehydrogenase
GOM96_RS11340	COG0437	4 iron, 4 sulfur cluster binding
GOM96_RS11355	COG1764	response to oxidative stress
GOM96_RS11370	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
GOM96_RS11375	COG0210	DNA helicase
GOM96_RS11400	COG3675	Pfam Lipase (class 3)
GOM96_RS11405	COG0826	peptidase U32
GOM96_RS11410	COG2841	Protein conserved in bacteria
GOM96_RS11415	COG0527	aspartate kinase activity
GOM96_RS11420	COG5285	phytanoyl-CoA dioxygenase
GOM96_RS11425	COG1917	Cupin 2, conserved barrel domain protein
GOM96_RS11430	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
GOM96_RS11440	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
GOM96_RS11455	COG0583	DNA-binding transcription factor activity
GOM96_RS11460	COG0439	Biotin carboxylase
GOM96_RS11465	COG5016	pyruvate
GOM96_RS11465	COG0511	ligase activity, forming carbon-carbon bonds
GOM96_RS11485	COG0318	PFAM AMP-dependent synthetase and ligase
GOM96_RS11490	COG3185	4-Hydroxyphenylpyruvate dioxygenase
GOM96_RS11490	COG1082	Xylose isomerase domain protein TIM barrel
GOM96_RS11495	COG2205	protein histidine kinase activity
GOM96_RS11500	COG0252	asparaginase activity
GOM96_RS11505	COG1115	amino acid carrier protein
GOM96_RS11530	COG1027	Aspartate ammonia-lyase
GOM96_RS11535	COG0583	DNA-binding transcription factor activity
GOM96_RS11570	COG0604	alcohol dehydrogenase
GOM96_RS11585	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
GOM96_RS11590	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
GOM96_RS11605	COG1960	acyl-CoA dehydrogenase activity
GOM96_RS11635	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
GOM96_RS11640	COG1764	response to oxidative stress
GOM96_RS11655	COG2989	Protein conserved in bacteria
GOM96_RS11665	COG0129	dihydroxy-acid dehydratase activity
GOM96_RS11670	COG1301	dicarboxylic acid transport
GOM96_RS11675	COG4191	Histidine kinase
GOM96_RS11680	COG2204	response regulator
GOM96_RS11690	COG0693	protein deglycase activity
GOM96_RS11695	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
GOM96_RS11715	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
GOM96_RS11720	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
GOM96_RS11725	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
GOM96_RS11760	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
GOM96_RS11765	COG0429	hydrolase of the alpha beta-hydrolase fold
GOM96_RS11775	COG0742	ribosomal rna small subunit methyltransferase
GOM96_RS11780	COG0612	Peptidase, M16
GOM96_RS11785	COG0612	Peptidase, M16
GOM96_RS11790	COG0552	protein localization to endoplasmic reticulum
GOM96_RS11795	COG2884	Cell division ATP-binding protein ftsE
GOM96_RS11800	COG2177	Part of the ABC transporter FtsEX involved in
GOM96_RS11820	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
GOM96_RS11825	COG2363	Small membrane protein
GOM96_RS11835	COG2022	thiamine diphosphate biosynthetic process
GOM96_RS11840	COG0220	tRNA (guanine-N7-)-methyltransferase activity
GOM96_RS11855	COG0635	Involved in the biosynthesis of porphyrin-containing compound
GOM96_RS11860	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
GOM96_RS11870	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
GOM96_RS11870	COG2813	Specifically methylates the guanine in position
GOM96_RS11875	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
GOM96_RS11880	COG1160	GTP binding
GOM96_RS11920	COG0540	Belongs to the ATCase OTCase family
GOM96_RS11935	COG1678	Uncharacterized ACR, COG1678
GOM96_RS11975	COG0643	Histidine kinase
GOM96_RS11975	COG0784	Response regulator, receiver
GOM96_RS11975	COG2198	Histidine kinase
GOM96_RS11990	COG1385	rRNA (uridine-N3-)-methyltransferase activity
GOM96_RS12000	COG3038	cytochrome b561
GOM96_RS12005	COG2353	YceI-like domain
GOM96_RS12010	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
GOM96_RS12025	COG0513	Belongs to the DEAD box helicase family
GOM96_RS12030	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
GOM96_RS12035	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
GOM96_RS12055	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
GOM96_RS12060	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
GOM96_RS12065	COG1131	(ABC) transporter
GOM96_RS12070	COG0842	Transport permease protein
GOM96_RS12075	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
GOM96_RS12090	COG2175	clavaminate synthase activity
GOM96_RS12095	COG0583	DNA-binding transcription factor activity
GOM96_RS12105	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
GOM96_RS12110	COG0126	phosphoglycerate kinase activity
GOM96_RS12125	COG0191	fructose-bisphosphate aldolase activity
GOM96_RS12135	COG0500	methyltransferase
GOM96_RS12160	COG2081	HI0933 family
GOM96_RS12165	COG1289	transmembrane transporter activity
GOM96_RS12170	COG0513	Belongs to the DEAD box helicase family
GOM96_RS12185	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
GOM96_RS12205	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
GOM96_RS12210	COG0277	FAD linked oxidase domain protein
GOM96_RS12215	COG0179	Fumarylacetoacetate (FAA) hydrolase
GOM96_RS12235	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
GOM96_RS12240	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
GOM96_RS12255	COG0494	nUDIX hydrolase
GOM96_RS12270	COG1519	Transferase
GOM96_RS12275	COG1538	Outer membrane efflux protein
GOM96_RS12280	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
GOM96_RS12290	COG1561	YicC-like family, N-terminal region
GOM96_RS12295	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
GOM96_RS12305	COG0708	Exodeoxyribonuclease III
GOM96_RS12310	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
GOM96_RS12325	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
GOM96_RS12335	COG0756	dUTP diphosphatase activity
GOM96_RS12340	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
GOM96_RS12345	COG2003	Belongs to the UPF0758 family
GOM96_RS12365	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
GOM96_RS12370	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
GOM96_RS12380	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
GOM96_RS12385	COG3949	Membrane
GOM96_RS12405	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
GOM96_RS12410	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
GOM96_RS12415	COG1454	alcohol dehydrogenase
GOM96_RS12420	COG1272	protein, Hemolysin III
GOM96_RS12435	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
GOM96_RS12440	COG0606	chelatase, subunit chli
GOM96_RS12450	COG0347	Belongs to the P(II) protein family
GOM96_RS12455	COG0004	ammonium transporteR
GOM96_RS12460	COG0432	Pfam Uncharacterised protein family UPF0047
GOM96_RS12470	COG1011	Hydrolase
GOM96_RS12475	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
GOM96_RS12485	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
GOM96_RS12500	COG1965	Belongs to the frataxin family
GOM96_RS12505	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
GOM96_RS12535	COG0165	Argininosuccinate lyase
GOM96_RS12540	COG3275	phosphorelay sensor kinase activity
GOM96_RS12570	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
GOM96_RS12590	COG0488	(ABC) transporter
GOM96_RS12600	COG0861	Integral membrane protein TerC family
GOM96_RS12610	COG1671	Belongs to the UPF0178 family
GOM96_RS12615	COG2050	protein possibly involved in aromatic compounds catabolism
GOM96_RS12620	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
GOM96_RS12630	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
GOM96_RS12635	COG0248	Ppx GppA phosphatase
GOM96_RS12650	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
GOM96_RS12665	COG0018	arginyl-trna synthetase
GOM96_RS12670	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
GOM96_RS12675	COG0254	rRNA binding
GOM96_RS12685	COG0281	malic enzyme
GOM96_RS12720	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
GOM96_RS12725	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
GOM96_RS12735	COG0070	glutamate synthase
GOM96_RS12735	COG0069	glutamate synthase activity
GOM96_RS12735	COG0067	glutamate synthase
GOM96_RS12740	COG0493	'glutamate synthase
GOM96_RS12750	COG2814	Major facilitator Superfamily
GOM96_RS12755	COG0583	DNA-binding transcription factor activity
GOM96_RS12780	COG3118	belongs to the thioredoxin family
GOM96_RS12785	COG2873	o-acetylhomoserine
GOM96_RS12790	COG3273	potassium ion transport
GOM96_RS12790	COG0471	metal ion transport
GOM96_RS12800	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
GOM96_RS12805	COG0358	DNA primase activity
GOM96_RS12810	COG0828	Belongs to the bacterial ribosomal protein bS21 family
GOM96_RS12815	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
GOM96_RS12820	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
GOM96_RS12825	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
GOM96_RS12835	COG0617	tRNA 3'-terminal CCA addition
GOM96_RS12840	COG2719	SpoVR family
GOM96_RS12845	COG2718	Belongs to the UPF0229 family
GOM96_RS12850	COG2766	serine protein kinase
GOM96_RS12855	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
GOM96_RS12860	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
GOM96_RS12865	COG2967	ApaG domain
GOM96_RS12870	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
GOM96_RS12880	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
GOM96_RS12885	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
GOM96_RS12890	COG3178	'Phosphotransferase
GOM96_RS12895	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
GOM96_RS12915	COG2197	response regulator
GOM96_RS12920	COG3842	ATPase activity
GOM96_RS12930	COG1176	ABC-type spermidine putrescine transport system, permease component I
GOM96_RS12935	COG1177	transmembrane transport
GOM96_RS12945	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
GOM96_RS12950	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
GOM96_RS12965	COG0512	Glutamine amidotransferase of anthranilate synthase
GOM96_RS12970	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
GOM96_RS12975	COG0134	indole-3-glycerol-phosphate synthase activity
GOM96_RS12985	COG1765	OsmC-like protein
GOM96_RS12990	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
GOM96_RS12995	COG0537	adenosine 5'-monophosphoramidase activity
GOM96_RS13000	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
GOM96_RS13010	COG1981	membrane
GOM96_RS13015	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
GOM96_RS13020	COG0316	Belongs to the HesB IscA family
GOM96_RS13025	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
GOM96_RS13030	COG0739	heme binding
GOM96_RS13035	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
GOM96_RS13065	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
GOM96_RS13065	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
GOM96_RS13070	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
GOM96_RS13095	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
GOM96_RS13120	COG0081	regulation of translation
GOM96_RS13130	COG0222	ribosome binding
GOM96_RS13135	COG0085	RNA polymerase activity
GOM96_RS13140	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
GOM96_RS13145	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
GOM96_RS13150	COG0049	tRNA binding
GOM96_RS13155	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
GOM96_RS13160	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
GOM96_RS13165	COG0051	transcription antitermination factor activity, RNA binding
GOM96_RS13170	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
GOM96_RS13175	COG0088	Forms part of the polypeptide exit tunnel
GOM96_RS13180	COG0089	rRNA binding
GOM96_RS13185	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
GOM96_RS13190	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
GOM96_RS13195	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
GOM96_RS13200	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
GOM96_RS13205	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
GOM96_RS13210	COG0255	Belongs to the universal ribosomal protein uL29 family
GOM96_RS13215	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
GOM96_RS13220	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
GOM96_RS13225	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
GOM96_RS13230	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
GOM96_RS13235	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
GOM96_RS13240	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
GOM96_RS13245	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
GOM96_RS13255	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
GOM96_RS13265	COG0200	Binds to the 23S rRNA
GOM96_RS13275	COG0257	Belongs to the bacterial ribosomal protein bL36 family
GOM96_RS13280	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
GOM96_RS13285	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
GOM96_RS13290	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
GOM96_RS13295	COG0202	RNA polymerase activity
GOM96_RS13300	COG0203	ribosomal protein L17
GOM96_RS13305	COG0753	catalase activity
GOM96_RS13315	COG2814	Major facilitator Superfamily
GOM96_RS13330	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
GOM96_RS13335	COG3047	cAMP biosynthetic process
GOM96_RS13345	COG0811	peptide transport
GOM96_RS13350	COG0811	peptide transport
GOM96_RS13355	COG0848	biopolymer transport protein
GOM96_RS13395	COG3118	belongs to the thioredoxin family
GOM96_RS13400	COG2391	methyltransferase activity
GOM96_RS13405	COG0425	Belongs to the sulfur carrier protein TusA family
GOM96_RS13415	COG2264	protein methyltransferase activity
GOM96_RS13430	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
GOM96_RS13430	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
GOM96_RS13445	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
GOM96_RS13450	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
GOM96_RS13455	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
GOM96_RS13460	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
GOM96_RS13465	COG3577	Aspartyl protease
GOM96_RS13470	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
GOM96_RS13480	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
GOM96_RS13490	COG0513	Belongs to the DEAD box helicase family
GOM96_RS13515	COG0840	transmembrane signaling receptor activity
GOM96_RS13525	COG2217	Heavy metal translocating P-type atpase
GOM96_RS13530	COG1309	transcriptional regulator
GOM96_RS13535	COG2814	Major facilitator Superfamily
GOM96_RS13540	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
GOM96_RS13575	COG2824	Alkylphosphonate utilization operon protein PhnA
GOM96_RS13580	COG1607	acyl-coa hydrolase
GOM96_RS13590	COG0402	S-adenosylhomocysteine deaminase activity
GOM96_RS13600	COG0642	Histidine kinase
GOM96_RS13650	COG1368	sulfuric ester hydrolase activity
GOM96_RS13670	COG3642	lipopolysaccharide core region biosynthetic process
GOM96_RS13715	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
GOM96_RS13720	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
GOM96_RS13725	COG2252	PERMEase
GOM96_RS13735	COG2813	Specifically methylates the guanine in position
GOM96_RS13750	COG0488	(ABC) transporter
GOM96_RS13755	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
GOM96_RS13760	COG0523	cobalamin synthesis protein
GOM96_RS13765	COG2879	small protein
GOM96_RS13770	COG1966	Carbon starvation protein
GOM96_RS13785	COG2020	methyltransferase activity
GOM96_RS13805	COG2841	Protein conserved in bacteria
GOM96_RS13810	COG1970	mechanosensitive ion channel activity
GOM96_RS13820	COG0714	Associated with various cellular activities
GOM96_RS13825	COG3256	nitric oxide reductase
GOM96_RS13830	COG2010	Cytochrome c
GOM96_RS13845	COG1067	ATP-dependent peptidase activity
GOM96_RS13855	COG2862	Uncharacterized protein family, UPF0114
GOM96_RS13860	COG0545	Peptidyl-prolyl cis-trans isomerase
GOM96_RS13870	COG0142	geranyltranstransferase activity
GOM96_RS13875	COG0261	This protein binds to 23S rRNA in the presence of protein L20
GOM96_RS13880	COG0211	Belongs to the bacterial ribosomal protein bL27 family
GOM96_RS13885	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
GOM96_RS13890	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
GOM96_RS13895	COG3045	CreA protein
GOM96_RS13900	COG0268	Binds directly to 16S ribosomal RNA
GOM96_RS13910	COG0196	riboflavin kinase activity
GOM96_RS13915	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
GOM96_RS13920	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
GOM96_RS13925	COG1047	Peptidyl-prolyl cis-trans
GOM96_RS13930	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
GOM96_RS13975	COG0023	Translation Initiation Factor
GOM96_RS13980	COG1166	arginine decarboxylase activity
GOM96_RS13990	COG0534	Mate efflux family protein
GOM96_RS14020	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
GOM96_RS14040	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
GOM96_RS14045	COG0019	diaminopimelate decarboxylase activity
GOM96_RS14055	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
GOM96_RS14065	COG2846	Di-iron-containing protein involved in the repair of iron-sulfur clusters
GOM96_RS14070	COG3604	Transcriptional regulator
GOM96_RS14080	COG0826	peptidase U32
GOM96_RS14085	COG0826	peptidase U32
GOM96_RS14090	COG3154	lipid carrier protein
GOM96_RS14120	COG1522	sequence-specific DNA binding
GOM96_RS14135	COG0733	neurotransmitter:sodium symporter activity
GOM96_RS14145	COG0625	glutathione transferase activity
GOM96_RS14150	COG0733	neurotransmitter:sodium symporter activity
GOM96_RS14170	COG2819	hydrolase of the alpha beta superfamily
GOM96_RS14195	COG2154	pterin-4-alpha-carbinolamine dehydratase
GOM96_RS14230	COG1960	acyl-CoA dehydrogenase activity
GOM96_RS14235	COG0348	domain, Protein
GOM96_RS14235	COG3901	Regulator of nitric oxide reductase transcription
GOM96_RS14240	COG4263	nitrous-oxide reductase activity
GOM96_RS14255	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
GOM96_RS14275	COG1028	Short-chain dehydrogenase reductase Sdr
GOM96_RS14285	COG3278	Belongs to the heme-copper respiratory oxidase family
GOM96_RS14305	COG1648	precorrin-2 dehydrogenase activity
GOM96_RS14305	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
GOM96_RS14310	COG0535	radical SAM domain protein
GOM96_RS14320	COG1845	cytochrome c oxidase, subunit III
GOM96_RS14325	COG0714	Associated with various cellular activities
GOM96_RS14340	COG2010	Cytochrome c
GOM96_RS14345	COG3391	amine dehydrogenase activity
GOM96_RS14370	COG2010	Cytochrome c
GOM96_RS14375	COG3256	nitric oxide reductase
GOM96_RS14385	COG4771	TonB-dependent receptor
GOM96_RS14400	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
GOM96_RS14420	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
GOM96_RS14425	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
GOM96_RS14430	COG0154	amidase activity
GOM96_RS14435	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
GOM96_RS14440	COG1077	Cell shape determining protein MreB Mrl
GOM96_RS14445	COG1792	Involved in formation and maintenance of cell shape
GOM96_RS14460	COG0424	maF-like protein
GOM96_RS14465	COG1530	ribonuclease E activity
GOM96_RS14475	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
GOM96_RS14480	COG0312	modulator of DNA gyrase
GOM96_RS14490	COG0312	modulator of DNA gyrase
GOM96_RS14495	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
GOM96_RS14500	COG1660	Displays ATPase and GTPase activities
GOM96_RS14515	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
GOM96_RS14520	COG1137	ATPase activity
GOM96_RS14525	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
GOM96_RS14535	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
GOM96_RS14545	COG1127	ABC transporter
GOM96_RS14550	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
GOM96_RS14555	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
GOM96_RS14580	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
GOM96_RS14585	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
GOM96_RS14600	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
GOM96_RS14620	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
GOM96_RS14620	COG2755	lipolytic protein G-D-S-L family
GOM96_RS14625	COG1131	(ABC) transporter
GOM96_RS14645	COG4969	Belongs to the N-Me-Phe pilin family
GOM96_RS14660	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
GOM96_RS14665	COG0237	dephospho-CoA kinase activity
GOM96_RS14680	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
GOM96_RS14685	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GOM96_RS14690	COG0723	plastoquinol--plastocyanin reductase activity
GOM96_RS14695	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
GOM96_RS14700	COG2857	Cytochrome c1
GOM96_RS14705	COG0625	glutathione transferase activity
GOM96_RS14710	COG2969	positive regulation of protein catabolic process
GOM96_RS14715	COG2823	Periplasmic or secreted lipoprotein
GOM96_RS14720	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
GOM96_RS14725	COG0792	nuclease activity
GOM96_RS14750	COG0275	rRNA processing
GOM96_RS14765	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
GOM96_RS14770	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
GOM96_RS14775	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
GOM96_RS14780	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
GOM96_RS14785	COG0772	Belongs to the SEDS family
GOM96_RS14790	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
GOM96_RS14795	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
GOM96_RS14800	COG1181	Belongs to the D-alanine--D-alanine ligase family
GOM96_RS14815	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
GOM96_RS14835	COG1285	pathogenesis
GOM96_RS14855	COG1028	Short-chain dehydrogenase reductase Sdr
GOM96_RS14860	COG0659	secondary active sulfate transmembrane transporter activity
GOM96_RS14910	COG0501	Belongs to the peptidase M48B family
GOM96_RS14920	COG2119	membrane
GOM96_RS14925	COG2813	Specifically methylates the guanine in position
GOM96_RS14930	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
GOM96_RS14935	COG1280	lysine exporter protein (LysE YggA)
GOM96_RS14940	COG0318	PFAM AMP-dependent synthetase and ligase
GOM96_RS14945	COG3048	D-serine ammonia-lyase activity
GOM96_RS14950	COG2885	chlorophyll binding
GOM96_RS14955	COG3850	Histidine kinase
GOM96_RS14955	COG4999	Histidine kinase
GOM96_RS14955	COG2205	protein histidine kinase activity
GOM96_RS14955	COG3437	response regulator, receiver
GOM96_RS14965	COG0204	Acyl-transferase
GOM96_RS14975	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
GOM96_RS14985	COG0386	Belongs to the glutathione peroxidase family
GOM96_RS14990	COG1309	transcriptional regulator
GOM96_RS15000	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
GOM96_RS15015	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
GOM96_RS15060	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
GOM96_RS15065	COG0693	protein deglycase activity
GOM96_RS15070	COG4628	conserved protein (DUF2132)
GOM96_RS15115	COG0714	Associated with various cellular activities
GOM96_RS15135	COG2925	Exonuclease
GOM96_RS15145	COG0788	formyltetrahydrofolate deformylase activity
GOM96_RS15155	COG0433	COG0433 Predicted ATPase
GOM96_RS15175	COG3022	response to hydroperoxide
GOM96_RS15185	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
GOM96_RS15190	COG0315	cyclic pyranopterin monophosphate synthase activity
GOM96_RS15195	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
GOM96_RS15210	COG3706	GGDEF domain
GOM96_RS15215	COG0400	carboxylic ester hydrolase activity
GOM96_RS15220	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
GOM96_RS15225	COG4597	amino acid ABC transporter
GOM96_RS15230	COG0765	amino acid transport
GOM96_RS15235	COG1126	abc transporter atp-binding protein
GOM96_RS15245	COG0047	phosphoribosylformylglycinamidine synthase activity
GOM96_RS15245	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
GOM96_RS15250	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
GOM96_RS15275	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
GOM96_RS15280	COG4536	flavin adenine dinucleotide binding
GOM96_RS15285	COG4137	Cytochrome C assembly protein
GOM96_RS15290	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
GOM96_RS15295	COG0228	four-way junction DNA binding
GOM96_RS15300	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
GOM96_RS15305	COG0336	Belongs to the RNA methyltransferase TrmD family
GOM96_RS15320	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
GOM96_RS15335	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
GOM96_RS15340	COG0418	dihydroorotase activity
GOM96_RS15350	COG0137	argininosuccinate synthase activity
GOM96_RS15355	COG0346	lactoylglutathione lyase activity
GOM96_RS15365	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
GOM96_RS15375	COG4659	FMN binding
GOM96_RS15380	COG4658	electron transport chain
GOM96_RS15390	COG2878	Part of a membrane complex involved in electron transport
GOM96_RS15395	COG4657	Part of a membrane complex involved in electron transport
GOM96_RS15405	COG1024	Enoyl-CoA hydratase
GOM96_RS15415	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
GOM96_RS15465	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
GOM96_RS15485	COG0571	ribonuclease III activity
GOM96_RS15495	COG1381	Involved in DNA repair and RecF pathway recombination
GOM96_RS15500	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
GOM96_RS15505	COG0500	methyltransferase
GOM96_RS15510	COG2226	methyltransferase
GOM96_RS15545	COG0840	transmembrane signaling receptor activity
GOM96_RS15555	COG4651	solute:proton antiporter activity
GOM96_RS15555	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
GOM96_RS15560	COG2233	PERMEase
GOM96_RS15570	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
GOM96_RS15575	COG4266	Belongs to the allantoicase family
GOM96_RS15580	COG3195	allantoin biosynthetic process
GOM96_RS15580	COG3648	Uricase
GOM96_RS15600	COG2252	PERMEase
GOM96_RS15605	COG1802	Transcriptional regulator
GOM96_RS15620	COG1414	Transcriptional regulator
GOM96_RS15625	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
GOM96_RS15630	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
GOM96_RS15635	COG0183	Belongs to the thiolase family
GOM96_RS15640	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
GOM96_RS15660	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
GOM96_RS15660	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
GOM96_RS15665	COG0489	protein tyrosine kinase activity
GOM96_RS15670	COG1278	Cold shock
GOM96_RS15675	COG0717	Belongs to the dCTP deaminase family
GOM96_RS15715	COG3639	organic phosphonate transmembrane transporter activity
GOM96_RS15725	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
GOM96_RS15730	COG2084	Dehydrogenase
GOM96_RS15735	COG3622	Belongs to the hyi family
GOM96_RS15740	COG2271	Major facilitator Superfamily
GOM96_RS15745	COG0443	Heat shock 70 kDa protein
GOM96_RS15755	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
GOM96_RS15770	COG2030	dehydratase
GOM96_RS15775	COG0318	PFAM AMP-dependent synthetase and ligase
GOM96_RS15780	COG0318	PFAM AMP-dependent synthetase and ligase
GOM96_RS15795	COG1643	Atp-dependent helicase
GOM96_RS15820	COG1234	tRNA 3'-trailer cleavage
GOM96_RS15835	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
GOM96_RS15865	COG1294	oxidase, subunit
GOM96_RS15870	COG4890	Cyd operon protein YbgT
GOM96_RS15880	COG0791	NLP P60 protein
GOM96_RS15885	COG0791	NLP P60 protein
GOM96_RS15895	COG4206	TonB-dependent receptor
GOM96_RS15910	COG1797	cobyrinic acid a,c-diamide synthase activity
GOM96_RS15915	COG0778	Nitroreductase
GOM96_RS15920	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
GOM96_RS15930	COG1492	cobalamin metabolic process
GOM96_RS15940	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
GOM96_RS15950	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
GOM96_RS15960	COG0251	oxidation-reduction process
GOM96_RS15985	COG2814	Major facilitator Superfamily
GOM96_RS16000	COG1301	dicarboxylic acid transport
GOM96_RS16005	COG1253	flavin adenine dinucleotide binding
GOM96_RS16035	COG3530	Putative quorum-sensing-regulated virulence factor
GOM96_RS16045	COG2863	cytochrome
GOM96_RS16050	COG3258	Cytochrome c
GOM96_RS16065	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
GOM96_RS16075	COG1393	Belongs to the ArsC family
GOM96_RS16090	COG0436	Aminotransferase
GOM96_RS16105	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
GOM96_RS16110	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
GOM96_RS16120	COG0628	permease
GOM96_RS16125	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
GOM96_RS16135	COG1169	isochorismate synthase
GOM96_RS16140	COG1021	2,3-dihydroxybenzoate-AMP ligase
GOM96_RS16145	COG1535	isochorismatase
GOM96_RS16145	COG3433	isochorismatase activity
GOM96_RS16150	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
GOM96_RS16155	COG1028	Short-chain dehydrogenase reductase Sdr
GOM96_RS16165	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
GOM96_RS16175	COG1120	ATPase activity
GOM96_RS16180	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
GOM96_RS16185	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
GOM96_RS16190	COG4771	TonB-dependent receptor
GOM96_RS16200	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
GOM96_RS16200	COG0116	Belongs to the methyltransferase superfamily
GOM96_RS16210	COG0189	ligase activity
GOM96_RS16210	COG4067	protein conserved in archaea
GOM96_RS16215	COG1309	transcriptional regulator
GOM96_RS16230	COG1462	curli production assembly transport component CsgG
GOM96_RS16245	COG2197	response regulator
GOM96_RS16250	COG1280	lysine exporter protein (LysE YggA)
GOM96_RS16260	COG0656	L-ascorbic acid biosynthetic process
GOM96_RS16265	COG0583	DNA-binding transcription factor activity
GOM96_RS16270	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
GOM96_RS16280	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
GOM96_RS16285	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
GOM96_RS16305	COG2326	polyphosphate kinase activity
GOM96_RS16310	COG3081	Nucleoid-associated protein
GOM96_RS16325	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
GOM96_RS16330	COG0477	Major facilitator Superfamily
GOM96_RS16335	COG0490	domain, Protein
GOM96_RS16335	COG0471	metal ion transport
GOM96_RS16345	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
GOM96_RS16365	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
GOM96_RS16370	COG0795	lipopolysaccharide-transporting ATPase activity
GOM96_RS16375	COG0795	lipopolysaccharide-transporting ATPase activity
GOM96_RS16385	COG1278	Cold shock
GOM96_RS16395	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
GOM96_RS16405	COG1862	Preprotein translocase
GOM96_RS16420	COG3134	Outer membrane lipoprotein
GOM96_RS16435	COG1045	serine acetyltransferase
GOM96_RS16445	COG1104	cysteine desulfurase activity
GOM96_RS16455	COG0316	Belongs to the HesB IscA family
GOM96_RS16460	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
GOM96_RS16465	COG0443	Heat shock 70 kDa protein
GOM96_RS16480	COG0105	UTP biosynthetic process
GOM96_RS16485	COG0820	rRNA (adenine-C2-)-methyltransferase activity
GOM96_RS16500	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
GOM96_RS16505	COG0124	histidyl-tRNA synthetase
GOM96_RS16510	COG2976	Protein conserved in bacteria
GOM96_RS16520	COG1160	GTP binding
GOM96_RS16525	COG0436	Aminotransferase
GOM96_RS16540	COG3647	Membrane
GOM96_RS16545	COG2356	endonuclease I
GOM96_RS16550	COG1064	alcohol dehydrogenase
GOM96_RS16555	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
GOM96_RS16565	COG4774	siderophore transport
GOM96_RS16570	COG0668	transmembrane transport
GOM96_RS16580	COG0739	heme binding
GOM96_RS16585	COG1131	(ABC) transporter
GOM96_RS16590	COG0842	Transport permease protein
GOM96_RS16605	COG2853	Lipoprotein
GOM96_RS16615	COG0745	RESPONSE REGULATOR receiver
GOM96_RS16625	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
GOM96_RS16630	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
GOM96_RS16635	COG0277	FAD linked oxidase domain protein
GOM96_RS16635	COG0247	lactate metabolic process
GOM96_RS16640	COG0583	DNA-binding transcription factor activity
GOM96_RS16655	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
GOM96_RS16695	COG2814	Major facilitator Superfamily
GOM96_RS16700	COG4948	Mandelate Racemase Muconate Lactonizing
GOM96_RS16705	COG4829	muconolactone delta-isomerase
GOM96_RS16710	COG3485	protocatechuate 3,4-dioxygenase
GOM96_RS16715	COG3135	benzoate transporter
GOM96_RS16795	COG0489	protein tyrosine kinase activity
GOM96_RS16795	COG3206	protein involved in exopolysaccharide biosynthesis
GOM96_RS16800	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
GOM96_RS16805	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
GOM96_RS16825	COG0741	lytic transglycosylase activity
GOM96_RS16830	COG0488	(ABC) transporter
GOM96_RS16840	COG0589	response to stress
GOM96_RS16850	COG0121	glutamine amidotransferase
GOM96_RS16870	COG0542	response to heat
GOM96_RS16880	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
GOM96_RS16890	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
GOM96_RS16905	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
GOM96_RS16910	COG2274	protein secretion by the type I secretion system
GOM96_RS16930	COG2199	diguanylate cyclase activity
GOM96_RS16930	COG3287	FIST C domain
GOM96_RS16930	COG2200	EAL domain
GOM96_RS16940	COG2832	Protein of unknown function (DUF454)
GOM96_RS16955	COG1846	Transcriptional regulator
GOM96_RS16960	COG1752	Esterase of the alpha-beta hydrolase superfamily
GOM96_RS16985	COG2354	Protein conserved in bacteria
GOM96_RS16990	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
GOM96_RS16995	COG0727	PFAM Uncharacterised protein family (UPF0153)
GOM96_RS17000	COG0778	Nitroreductase
GOM96_RS17015	COG0745	RESPONSE REGULATOR receiver
GOM96_RS17025	COG2350	Protein conserved in bacteria
GOM96_RS17030	COG2917	probably involved in intracellular septation
GOM96_RS17035	COG0613	PHP domain protein
GOM96_RS17040	COG0009	L-threonylcarbamoyladenylate synthase
GOM96_RS17045	COG0180	Tryptophanyl-tRNA synthetase
GOM96_RS17055	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
GOM96_RS17060	COG1131	(ABC) transporter
GOM96_RS17085	COG2226	methyltransferase
GOM96_RS17090	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
GOM96_RS17095	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
GOM96_RS17135	COG0513	Belongs to the DEAD box helicase family
GOM96_RS17150	COG4935	Belongs to the peptidase S8 family
GOM96_RS17150	COG1404	Belongs to the peptidase S8 family
GOM96_RS17160	COG1262	PFAM Formylglycine-generating sulfatase enzyme
GOM96_RS17170	COG1201	RNA secondary structure unwinding
GOM96_RS17200	COG2133	pyrroloquinoline quinone binding
GOM96_RS17205	COG4993	Dehydrogenase
GOM96_RS17210	COG2996	Protein conserved in bacteria
GOM96_RS17250	COG4974	Belongs to the 'phage' integrase family
GOM96_RS17295	COG3093	addiction module antidote protein HigA
GOM96_RS17315	COG1017	nitric oxide dioxygenase activity
GOM96_RS17315	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
GOM96_RS17320	COG0625	glutathione transferase activity
GOM96_RS17345	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
GOM96_RS17355	COG4991	sh3 domain protein
GOM96_RS17360	COG0776	regulation of translation
GOM96_RS17395	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
GOM96_RS17410	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
GOM96_RS17430	COG1295	ribonuclease BN
GOM96_RS17455	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
GOM96_RS17460	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
GOM96_RS17480	COG3192	ethanolamine utilization protein
GOM96_RS17485	COG4303	Ethanolamine ammonia lyase large subunit
GOM96_RS17490	COG4302	ethanolamine ammonia-lyase activity
GOM96_RS17520	COG1546	Belongs to the CinA family
GOM96_RS17525	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
GOM96_RS17530	COG2137	regulation of response to DNA damage stimulus
GOM96_RS17540	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
GOM96_RS17545	COG3957	D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase
GOM96_RS17555	COG3148	PFAM DTW domain containing protein
GOM96_RS17560	COG0697	spore germination
GOM96_RS17570	COG0583	DNA-binding transcription factor activity
GOM96_RS17580	COG3012	SEC-C Motif Domain Protein
GOM96_RS17600	COG1199	ATP-dependent helicase activity
GOM96_RS17605	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
GOM96_RS17615	COG0259	pyridoxamine-phosphate oxidase activity
GOM96_RS17625	COG3133	Outer membrane lipoprotein
GOM96_RS17630	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
GOM96_RS17630	COG2111	Na H antiporter
GOM96_RS17635	COG1006	Multisubunit Na H antiporter MnhC subunit
GOM96_RS17640	COG0651	ATP synthesis coupled electron transport
GOM96_RS17650	COG2212	antiporter activity
GOM96_RS17655	COG1320	monovalent cation:proton antiporter activity
GOM96_RS17660	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
GOM96_RS17665	COG0024	Methionine aminopeptidase
GOM96_RS17670	COG0052	Belongs to the universal ribosomal protein uS2 family
GOM96_RS17675	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
GOM96_RS17680	COG0528	UMP kinase activity
GOM96_RS17685	COG0233	cytoplasmic translational termination
GOM96_RS17690	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
GOM96_RS17700	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
GOM96_RS17725	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
GOM96_RS17730	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
GOM96_RS17735	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
GOM96_RS17740	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
GOM96_RS17750	COG0825	malonyl-CoA metabolic process
GOM96_RS17755	COG0037	tRNA processing
GOM96_RS17760	COG0504	CTP synthase activity
GOM96_RS17765	COG2877	3-deoxy-8-phosphooctulonate synthase activity
GOM96_RS17780	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
GOM96_RS17785	COG0583	DNA-binding transcription factor activity
GOM96_RS17790	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
GOM96_RS17800	COG1902	pentaerythritol trinitrate reductase activity
GOM96_RS17810	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
GOM96_RS17815	COG0585	pseudouridine synthase activity
GOM96_RS17820	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
GOM96_RS17825	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
GOM96_RS17855	COG0589	response to stress
GOM96_RS17865	COG0217	transcriptional regulatory protein
GOM96_RS17900	COG0483	inositol monophosphate 1-phosphatase activity
GOM96_RS17915	COG1028	Short-chain dehydrogenase reductase Sdr
GOM96_RS17920	COG0546	phosphoglycolate phosphatase activity
GOM96_RS17925	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
GOM96_RS17930	COG0402	S-adenosylhomocysteine deaminase activity
GOM96_RS17965	COG0720	synthase
GOM96_RS17970	COG2056	Na+-H+ antiporter family
GOM96_RS18000	COG2153	protein acetylation
GOM96_RS18005	COG2850	peptidyl-arginine hydroxylation
GOM96_RS18015	COG2915	High frequency lysogenization protein hflD homolog
GOM96_RS18020	COG0482	sulfurtransferase activity
GOM96_RS18040	COG1278	Cold shock
GOM96_RS18045	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
GOM96_RS18050	COG0542	response to heat
GOM96_RS18055	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
GOM96_RS18060	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
GOM96_RS18065	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
GOM96_RS18070	COG0492	ferredoxin-NADP+ reductase activity
GOM96_RS18075	COG1674	ftsk spoiiie
GOM96_RS18080	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
GOM96_RS18085	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
GOM96_RS18090	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
GOM96_RS18095	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
GOM96_RS18100	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
GOM96_RS18100	COG1648	precorrin-2 dehydrogenase activity
GOM96_RS18130	COG2920	part of a sulfur-relay system
GOM96_RS18135	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
GOM96_RS18140	COG0435	Glutathione S-transferase
GOM96_RS18145	COG1238	metal cluster binding
GOM96_RS18160	COG0183	Belongs to the thiolase family
GOM96_RS18165	COG1960	acyl-CoA dehydrogenase activity
GOM96_RS18170	COG0318	PFAM AMP-dependent synthetase and ligase
GOM96_RS18175	COG1804	L-carnitine dehydratase bile acid-inducible protein F
GOM96_RS18185	COG1770	oligopeptidase
GOM96_RS18190	COG1024	Enoyl-CoA hydratase
GOM96_RS18190	COG1250	3-hydroxyacyl-CoA dehydrogenase
GOM96_RS18195	COG0183	Belongs to the thiolase family
GOM96_RS18230	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
GOM96_RS18260	COG0653	protein targeting
GOM96_RS18280	COG0133	tryptophan synthase activity
GOM96_RS18345	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
GOM96_RS18375	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
GOM96_RS18435	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair