locus-tag class description CJO93_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix CJO93_RS00005 PF00308 Bacterial dnaA protein CJO93_RS00005 PF11638 DnaA N-terminal domain CJO93_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain CJO93_RS00010 PF02767 DNA polymerase III beta subunit, central domain CJO93_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain CJO93_RS00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS00015 PF18053 DNA gyrase B subunit insert domain CJO93_RS00015 PF00204 DNA gyrase B CJO93_RS00015 PF00986 DNA gyrase B subunit, carboxyl terminus CJO93_RS00015 PF01751 Toprim domain CJO93_RS00025 PF00140 Sigma-70 factor, region 1.2 CJO93_RS00025 PF04545 Sigma-70, region 4 CJO93_RS00025 PF04542 Sigma-70 region 2 CJO93_RS00025 PF04539 Sigma-70 region 3 CJO93_RS00035 PF13737 Transposase DDE domain CJO93_RS00050 PF00553 Cellulose binding domain CJO93_RS00050 PF01341 Glycosyl hydrolases family 6 CJO93_RS00050 PF00041 Fibronectin type III domain CJO93_RS00055 PF05598 Transposase domain (DUF772) CJO93_RS00055 PF01609 Transposase DDE domain CJO93_RS00060 PF03852 DNA mismatch endonuclease Vsr CJO93_RS00085 PF13737 Transposase DDE domain CJO93_RS00110 PF05488 PAAR motif CJO93_RS00110 PF01129 NAD:arginine ADP-ribosyltransferase CJO93_RS00130 PF05598 Transposase domain (DUF772) CJO93_RS00130 PF01609 Transposase DDE domain CJO93_RS00165 PF01062 Bestrophin, RFP-TM, chloride channel CJO93_RS00170 PF02661 Fic/DOC family CJO93_RS00175 PF02203 Tar ligand binding domain homologue CJO93_RS00175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO93_RS00175 PF00672 HAMP domain CJO93_RS00185 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJO93_RS00190 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS00195 PF00005 ABC transporter CJO93_RS00200 PF01266 FAD dependent oxidoreductase CJO93_RS00215 PF00072 Response regulator receiver domain CJO93_RS00215 PF00486 Transcriptional regulatory protein, C terminal CJO93_RS00220 PF08521 Two-component sensor kinase N-terminal CJO93_RS00220 PF00512 His Kinase A (phospho-acceptor) domain CJO93_RS00220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS00230 PF07690 Major Facilitator Superfamily CJO93_RS00240 PF00970 Oxidoreductase FAD-binding domain CJO93_RS00240 PF00175 Oxidoreductase NAD-binding domain CJO93_RS00240 PF00042 Globin CJO93_RS00245 PF02082 Transcriptional regulator CJO93_RS00250 PF02384 N-6 DNA Methylase CJO93_RS00250 PF12161 HsdM N-terminal domain CJO93_RS00265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS00265 PF00512 His Kinase A (phospho-acceptor) domain CJO93_RS00270 PF00486 Transcriptional regulatory protein, C terminal CJO93_RS00270 PF00072 Response regulator receiver domain CJO93_RS00295 PF00563 EAL domain CJO93_RS00295 PF00360 Phytochrome region CJO93_RS00295 PF01590 GAF domain CJO93_RS00295 PF00990 Diguanylate cyclase, GGDEF domain CJO93_RS00300 PF03180 NLPA lipoprotein CJO93_RS00305 PF00512 His Kinase A (phospho-acceptor) domain CJO93_RS00305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS00305 PF13493 Domain of unknown function (DUF4118) CJO93_RS00305 PF02702 Osmosensitive K+ channel His kinase sensor domain CJO93_RS00305 PF13492 GAF domain CJO93_RS00310 PF02669 K+-transporting ATPase, c chain CJO93_RS00320 PF03814 Potassium-transporting ATPase A subunit CJO93_RS00355 PF01048 Phosphorylase superfamily CJO93_RS00360 PF00072 Response regulator receiver domain CJO93_RS00360 PF00196 Bacterial regulatory proteins, luxR family CJO93_RS00365 PF00005 ABC transporter CJO93_RS00375 PF00708 Acylphosphatase CJO93_RS00385 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CJO93_RS00390 PF02515 CoA-transferase family III CJO93_RS00405 PF03776 Septum formation topological specificity factor MinE CJO93_RS00410 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CJO93_RS00415 PF05209 Septum formation inhibitor MinC, N-terminal domain CJO93_RS00415 PF03775 Septum formation inhibitor MinC, C-terminal domain CJO93_RS00420 PF00149 Calcineurin-like phosphoesterase CJO93_RS00420 PF02872 5'-nucleotidase, C-terminal domain CJO93_RS00430 PF08546 Ketopantoate reductase PanE/ApbA C terminal CJO93_RS00430 PF02558 Ketopantoate reductase PanE/ApbA CJO93_RS00440 PF00216 Bacterial DNA-binding protein CJO93_RS00455 PF01329 Pterin 4 alpha carbinolamine dehydratase CJO93_RS00460 PF00351 Biopterin-dependent aromatic amino acid hydroxylase CJO93_RS00465 PF01037 Lrp/AsnC ligand binding domain CJO93_RS00470 PF07947 YhhN family CJO93_RS00475 PF02423 Ornithine cyclodeaminase/mu-crystallin family CJO93_RS00480 PF03922 OmpW family CJO93_RS00490 PF00403 Heavy-metal-associated domain CJO93_RS00495 PF00376 MerR family regulatory protein CJO93_RS00495 PF09278 MerR, DNA binding CJO93_RS00500 PF12147 Putative methyltransferase CJO93_RS00500 PF12146 Serine aminopeptidase, S33 CJO93_RS00505 PF00732 GMC oxidoreductase CJO93_RS00505 PF05199 GMC oxidoreductase CJO93_RS00510 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJO93_RS00510 PF00005 ABC transporter CJO93_RS00515 PF00005 ABC transporter CJO93_RS00525 PF02653 Branched-chain amino acid transport system / permease component CJO93_RS00545 PF01925 Sulfite exporter TauE/SafE CJO93_RS00560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS00560 PF03466 LysR substrate binding domain CJO93_RS00565 PF12843 Putative quorum-sensing-regulated virulence factor CJO93_RS00570 PF03466 LysR substrate binding domain CJO93_RS00570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS00590 PF01134 Glucose inhibited division protein A CJO93_RS00590 PF13932 GidA associated domain CJO93_RS00595 PF02527 rRNA small subunit methyltransferase G CJO93_RS00600 PF13614 AAA domain CJO93_RS00605 PF02195 ParB-like nuclease domain CJO93_RS00605 PF17762 HTH domain found in ParB protein CJO93_RS00615 PF00119 ATP synthase A chain CJO93_RS00620 PF00137 ATP synthase subunit C CJO93_RS00625 PF00430 ATP synthase B/B' CF(0) CJO93_RS00630 PF00213 ATP synthase delta (OSCP) subunit CJO93_RS00635 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJO93_RS00635 PF00306 ATP synthase alpha/beta chain, C terminal domain CJO93_RS00635 PF02874 ATP synthase alpha/beta family, beta-barrel domain CJO93_RS00640 PF00231 ATP synthase CJO93_RS00645 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJO93_RS00645 PF02874 ATP synthase alpha/beta family, beta-barrel domain CJO93_RS00650 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CJO93_RS00650 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CJO93_RS00665 PF13380 CoA binding domain CJO93_RS00670 PF07859 alpha/beta hydrolase fold CJO93_RS00680 PF12849 PBP superfamily domain CJO93_RS00685 PF00043 Glutathione S-transferase, C-terminal domain CJO93_RS00685 PF02798 Glutathione S-transferase, N-terminal domain CJO93_RS00695 PF02743 Cache domain CJO93_RS00695 PF00672 HAMP domain CJO93_RS00695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO93_RS00715 PF01208 Uroporphyrinogen decarboxylase (URO-D) CJO93_RS00720 PF18074 Primosomal protein N C-terminal domain CJO93_RS00720 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CJO93_RS00720 PF00270 DEAD/DEAH box helicase CJO93_RS00720 PF00271 Helicase conserved C-terminal domain CJO93_RS00720 PF17764 3′ DNA-binding domain (3′BD) CJO93_RS00725 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CJO93_RS00725 PF14850 DNA-binding domain of Proline dehydrogenase CJO93_RS00725 PF01619 Proline dehydrogenase CJO93_RS00725 PF00171 Aldehyde dehydrogenase family CJO93_RS00730 PF13458 Periplasmic binding protein CJO93_RS00740 PF04107 Glutamate-cysteine ligase family 2(GCS2) CJO93_RS00745 PF03169 OPT oligopeptide transporter protein CJO93_RS00750 PF03315 Serine dehydratase beta chain CJO93_RS00750 PF03313 Serine dehydratase alpha chain CJO93_RS00755 PF02347 Glycine cleavage system P-protein CJO93_RS00760 PF01597 Glycine cleavage H-protein CJO93_RS00765 PF01571 Aminomethyltransferase folate-binding domain CJO93_RS00765 PF08669 Glycine cleavage T-protein C-terminal barrel domain CJO93_RS00785 PF00580 UvrD/REP helicase N-terminal domain CJO93_RS00785 PF13361 UvrD-like helicase C-terminal domain CJO93_RS00805 PF03472 Autoinducer binding domain CJO93_RS00805 PF00196 Bacterial regulatory proteins, luxR family CJO93_RS00810 PF00765 Autoinducer synthase CJO93_RS00820 PF06969 HemN C-terminal domain CJO93_RS00820 PF04055 Radical SAM superfamily CJO93_RS00825 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CJO93_RS00825 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CJO93_RS00830 PF01261 Xylose isomerase-like TIM barrel CJO93_RS00835 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CJO93_RS00835 PF00205 Thiamine pyrophosphate enzyme, central domain CJO93_RS00835 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CJO93_RS00840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS00840 PF03466 LysR substrate binding domain CJO93_RS00855 PF01205 Uncharacterized protein family UPF0029 CJO93_RS00855 PF09186 Domain of unknown function (DUF1949) CJO93_RS00865 PF00375 Sodium:dicarboxylate symporter family CJO93_RS00870 PF03561 Allantoicase repeat CJO93_RS00875 PF04115 Ureidoglycolate lyase CJO93_RS00880 PF07687 Peptidase dimerisation domain CJO93_RS00880 PF01546 Peptidase family M20/M25/M40 CJO93_RS00895 PF03960 ArsC family CJO93_RS00910 PF00753 Metallo-beta-lactamase superfamily CJO93_RS00920 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJO93_RS00925 PF02021 Uncharacterised protein family UPF0102 CJO93_RS00940 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding CJO93_RS00940 PF10518 TAT (twin-arginine translocation) pathway signal sequence CJO93_RS00940 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO93_RS00945 PF00892 EamA-like transporter family CJO93_RS00980 PF08534 Redoxin CJO93_RS00985 PF02872 5'-nucleotidase, C-terminal domain CJO93_RS00985 PF00149 Calcineurin-like phosphoesterase CJO93_RS00995 PF02463 RecF/RecN/SMC N terminal domain CJO93_RS01000 PF13737 Transposase DDE domain CJO93_RS01010 PF05598 Transposase domain (DUF772) CJO93_RS01010 PF01609 Transposase DDE domain CJO93_RS01030 PF02796 Helix-turn-helix domain of resolvase CJO93_RS01030 PF00239 Resolvase, N terminal domain CJO93_RS01055 PF12728 Helix-turn-helix domain CJO93_RS01140 PF02371 Transposase IS116/IS110/IS902 family CJO93_RS01140 PF01548 Transposase CJO93_RS01165 PF03527 RHS protein CJO93_RS01165 PF05593 RHS Repeat CJO93_RS01180 PF05717 IS66 Orf2 like protein CJO93_RS01220 PF11855 Protein of unknown function (DUF3375) CJO93_RS01250 PF13700 Domain of unknown function (DUF4158) CJO93_RS01250 PF01526 Tn3 transposase DDE domain CJO93_RS01265 PF00589 Phage integrase family CJO93_RS01265 PF02899 Phage integrase, N-terminal SAM-like domain CJO93_RS01290 PF05594 Haemagluttinin repeat CJO93_RS01290 PF13332 Hemagglutinin repeat CJO93_RS01290 PF05860 haemagglutination activity domain CJO93_RS01290 PF04829 Pre-toxin domain with VENN motif CJO93_RS01290 PF15526 Novel toxin 21 CJO93_RS01295 PF17287 POTRA domain CJO93_RS01295 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CJO93_RS01295 PF08479 POTRA domain, ShlB-type CJO93_RS01300 PF13145 PPIC-type PPIASE domain CJO93_RS01370 PF01609 Transposase DDE domain CJO93_RS01370 PF05598 Transposase domain (DUF772) CJO93_RS01410 PF13181 Tetratricopeptide repeat CJO93_RS01420 PF00196 Bacterial regulatory proteins, luxR family CJO93_RS01420 PF00072 Response regulator receiver domain CJO93_RS01430 PF05175 Methyltransferase small domain CJO93_RS01435 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CJO93_RS01435 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO93_RS01450 PF01609 Transposase DDE domain CJO93_RS01450 PF13006 Insertion element 4 transposase N-terminal CJO93_RS01455 PF00313 'Cold-shock' DNA-binding domain CJO93_RS01475 PF01609 Transposase DDE domain CJO93_RS01475 PF05598 Transposase domain (DUF772) CJO93_RS01485 PF13737 Transposase DDE domain CJO93_RS01510 PF01381 Helix-turn-helix CJO93_RS01535 PF00990 Diguanylate cyclase, GGDEF domain CJO93_RS01535 PF01590 GAF domain CJO93_RS01535 PF00360 Phytochrome region CJO93_RS01535 PF00563 EAL domain CJO93_RS01550 PF13180 PDZ domain CJO93_RS01560 PF00106 short chain dehydrogenase CJO93_RS01570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO93_RS01570 PF00672 HAMP domain CJO93_RS01570 PF02203 Tar ligand binding domain homologue CJO93_RS01595 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CJO93_RS01595 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CJO93_RS01600 PF00107 Zinc-binding dehydrogenase CJO93_RS01600 PF08240 Alcohol dehydrogenase GroES-like domain CJO93_RS01605 PF02954 Bacterial regulatory protein, Fis family CJO93_RS01605 PF00158 Sigma-54 interaction domain CJO93_RS01605 PF01590 GAF domain CJO93_RS01610 PF00171 Aldehyde dehydrogenase family CJO93_RS01615 PF06751 Ethanolamine ammonia lyase large subunit (EutB) CJO93_RS01620 PF05985 Ethanolamine ammonia-lyase light chain (EutC) CJO93_RS01625 PF00929 Exonuclease CJO93_RS01625 PF08411 Exonuclease C-terminal CJO93_RS01650 PF00392 Bacterial regulatory proteins, gntR family CJO93_RS01650 PF00155 Aminotransferase class I and II CJO93_RS01665 PF00482 Type II secretion system (T2SS), protein F CJO93_RS01670 PF00437 Type II/IV secretion system protein CJO93_RS01675 PF00263 Bacterial type II and III secretion system protein CJO93_RS01675 PF03958 Bacterial type II/III secretion system short domain CJO93_RS01700 PF07963 Prokaryotic N-terminal methylation motif CJO93_RS01700 PF11612 Type II secretion system (T2SS), protein J CJO93_RS01705 PF02501 Type II secretion system (T2SS), protein I CJO93_RS01705 PF07963 Prokaryotic N-terminal methylation motif CJO93_RS01710 PF07963 Prokaryotic N-terminal methylation motif CJO93_RS01710 PF12019 Type II transport protein GspH CJO93_RS01715 PF08334 Type II secretion system (T2SS), protein G CJO93_RS01715 PF07963 Prokaryotic N-terminal methylation motif CJO93_RS01730 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CJO93_RS01735 PF01037 Lrp/AsnC ligand binding domain CJO93_RS01745 PF00082 Subtilase family CJO93_RS01745 PF05922 Peptidase inhibitor I9 CJO93_RS01745 PF13860 FlgD Ig-like domain CJO93_RS01745 PF02225 PA domain CJO93_RS01755 PF13006 Insertion element 4 transposase N-terminal CJO93_RS01755 PF01609 Transposase DDE domain CJO93_RS01770 PF02525 Flavodoxin-like fold CJO93_RS01775 PF02254 TrkA-N domain CJO93_RS01775 PF00999 Sodium/hydrogen exchanger family CJO93_RS01795 PF01546 Peptidase family M20/M25/M40 CJO93_RS01795 PF07687 Peptidase dimerisation domain CJO93_RS01805 PF13609 Gram-negative porin CJO93_RS01810 PF01609 Transposase DDE domain CJO93_RS01810 PF13006 Insertion element 4 transposase N-terminal CJO93_RS01815 PF03401 Tripartite tricarboxylate transporter family receptor CJO93_RS01820 PF00486 Transcriptional regulatory protein, C terminal CJO93_RS01820 PF00072 Response regulator receiver domain CJO93_RS01825 PF01355 High potential iron-sulfur protein CJO93_RS01845 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CJO93_RS01870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS01870 PF00512 His Kinase A (phospho-acceptor) domain CJO93_RS01870 PF09456 RcsC Alpha-Beta-Loop (ABL) CJO93_RS01870 PF00072 Response regulator receiver domain CJO93_RS01875 PF00072 Response regulator receiver domain CJO93_RS01875 PF00196 Bacterial regulatory proteins, luxR family CJO93_RS01880 PF01545 Cation efflux family CJO93_RS01880 PF16916 Dimerisation domain of Zinc Transporter CJO93_RS01915 PF07690 Major Facilitator Superfamily CJO93_RS01920 PF00924 Mechanosensitive ion channel CJO93_RS01935 PF00072 Response regulator receiver domain CJO93_RS01935 PF00486 Transcriptional regulatory protein, C terminal CJO93_RS01940 PF00512 His Kinase A (phospho-acceptor) domain CJO93_RS01940 PF00672 HAMP domain CJO93_RS01940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS01955 PF07690 Major Facilitator Superfamily CJO93_RS01960 PF07690 Major Facilitator Superfamily CJO93_RS01970 PF04349 Periplasmic glucan biosynthesis protein, MdoG CJO93_RS01975 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CJO93_RS01995 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CJO93_RS01995 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CJO93_RS02010 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS02015 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS02020 PF00005 ABC transporter CJO93_RS02020 PF17912 MalK OB fold domain CJO93_RS02025 PF00005 ABC transporter CJO93_RS02025 PF17912 MalK OB fold domain CJO93_RS02030 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CJO93_RS02030 PF01266 FAD dependent oxidoreductase CJO93_RS02035 PF00455 DeoR C terminal sensor domain CJO93_RS02035 PF08220 DeoR-like helix-turn-helix domain CJO93_RS02085 PF03144 Elongation factor Tu domain 2 CJO93_RS02085 PF00009 Elongation factor Tu GTP binding domain CJO93_RS02085 PF03143 Elongation factor Tu C-terminal domain CJO93_RS02100 PF00467 KOW motif CJO93_RS02100 PF02357 Transcription termination factor nusG CJO93_RS02105 PF03946 Ribosomal protein L11, N-terminal domain CJO93_RS02105 PF00298 Ribosomal protein L11, RNA binding domain CJO93_RS02110 PF00687 Ribosomal protein L1p/L10e family CJO93_RS02115 PF00466 Ribosomal protein L10 CJO93_RS02120 PF16320 Ribosomal protein L7/L12 dimerisation domain CJO93_RS02120 PF00542 Ribosomal protein L7/L12 C-terminal domain CJO93_RS02125 PF04560 RNA polymerase Rpb2, domain 7 CJO93_RS02125 PF04561 RNA polymerase Rpb2, domain 2 CJO93_RS02125 PF00562 RNA polymerase Rpb2, domain 6 CJO93_RS02125 PF10385 RNA polymerase beta subunit external 1 domain CJO93_RS02125 PF04565 RNA polymerase Rpb2, domain 3 CJO93_RS02125 PF04563 RNA polymerase beta subunit CJO93_RS02130 PF04983 RNA polymerase Rpb1, domain 3 CJO93_RS02130 PF04997 RNA polymerase Rpb1, domain 1 CJO93_RS02130 PF05000 RNA polymerase Rpb1, domain 4 CJO93_RS02130 PF00623 RNA polymerase Rpb1, domain 2 CJO93_RS02130 PF04998 RNA polymerase Rpb1, domain 5 CJO93_RS02135 PF09909 Uncharacterized protein conserved in bacteria (DUF2138) CJO93_RS02140 PF06672 Protein of unknown function (DUF1175) CJO93_RS02145 PF00207 Alpha-2-macroglobulin family CJO93_RS02145 PF07703 Alpha-2-macroglobulin bait region domain CJO93_RS02145 PF01835 MG2 domain CJO93_RS02150 PF08486 Stage II sporulation protein CJO93_RS02150 PF10062 Predicted secreted protein (DUF2300) CJO93_RS02155 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) CJO93_RS02160 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) CJO93_RS02170 PF16124 RecQ zinc-binding CJO93_RS02170 PF00271 Helicase conserved C-terminal domain CJO93_RS02170 PF00570 HRDC domain CJO93_RS02170 PF00270 DEAD/DEAH box helicase CJO93_RS02170 PF09382 RQC domain CJO93_RS02175 PF00164 Ribosomal protein S12/S23 CJO93_RS02180 PF00177 Ribosomal protein S7p/S5e CJO93_RS02185 PF14492 Elongation Factor G, domain II CJO93_RS02185 PF00679 Elongation factor G C-terminus CJO93_RS02185 PF00009 Elongation factor Tu GTP binding domain CJO93_RS02185 PF03144 Elongation factor Tu domain 2 CJO93_RS02185 PF03764 Elongation factor G, domain IV CJO93_RS02190 PF03144 Elongation factor Tu domain 2 CJO93_RS02190 PF03143 Elongation factor Tu C-terminal domain CJO93_RS02190 PF00009 Elongation factor Tu GTP binding domain CJO93_RS02195 PF00338 Ribosomal protein S10p/S20e CJO93_RS02200 PF00297 Ribosomal protein L3 CJO93_RS02205 PF00573 Ribosomal protein L4/L1 family CJO93_RS02210 PF00276 Ribosomal protein L23 CJO93_RS02215 PF00181 Ribosomal Proteins L2, RNA binding domain CJO93_RS02215 PF03947 Ribosomal Proteins L2, C-terminal domain CJO93_RS02220 PF00203 Ribosomal protein S19 CJO93_RS02225 PF00237 Ribosomal protein L22p/L17e CJO93_RS02230 PF00189 Ribosomal protein S3, C-terminal domain CJO93_RS02230 PF07650 KH domain CJO93_RS02235 PF00252 Ribosomal protein L16p/L10e CJO93_RS02240 PF00831 Ribosomal L29 protein CJO93_RS02245 PF00366 Ribosomal protein S17 CJO93_RS02250 PF00238 Ribosomal protein L14p/L23e CJO93_RS02255 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CJO93_RS02260 PF00281 Ribosomal protein L5 CJO93_RS02260 PF00673 ribosomal L5P family C-terminus CJO93_RS02265 PF00253 Ribosomal protein S14p/S29e CJO93_RS02270 PF00410 Ribosomal protein S8 CJO93_RS02275 PF00347 Ribosomal protein L6 CJO93_RS02280 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CJO93_RS02285 PF03719 Ribosomal protein S5, C-terminal domain CJO93_RS02285 PF00333 Ribosomal protein S5, N-terminal domain CJO93_RS02290 PF00327 Ribosomal protein L30p/L7e CJO93_RS02295 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CJO93_RS02300 PF00344 SecY translocase CJO93_RS02305 PF01176 Translation initiation factor 1A / IF-1 CJO93_RS02310 PF00444 Ribosomal protein L36 CJO93_RS02315 PF00416 Ribosomal protein S13/S18 CJO93_RS02320 PF00411 Ribosomal protein S11 CJO93_RS02325 PF01479 S4 domain CJO93_RS02325 PF00163 Ribosomal protein S4/S9 N-terminal domain CJO93_RS02330 PF01000 RNA polymerase Rpb3/RpoA insert domain CJO93_RS02330 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CJO93_RS02330 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CJO93_RS02335 PF01196 Ribosomal protein L17 CJO93_RS02345 PF11412 Disulphide bond corrector protein DsbC CJO93_RS02345 PF02683 Cytochrome C biogenesis protein transmembrane region CJO93_RS02350 PF00490 Delta-aminolevulinic acid dehydratase CJO93_RS02355 PF01926 50S ribosome-binding GTPase CJO93_RS02360 PF00034 Cytochrome c CJO93_RS02365 PF05140 ResB-like family CJO93_RS02370 PF01578 Cytochrome C assembly protein CJO93_RS02380 PF04542 Sigma-70 region 2 CJO93_RS02380 PF08281 Sigma-70, region 4 CJO93_RS02390 PF00174 Oxidoreductase molybdopterin binding domain CJO93_RS02395 PF01794 Ferric reductase like transmembrane component CJO93_RS02400 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CJO93_RS02400 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CJO93_RS02410 PF01491 Frataxin-like domain CJO93_RS02415 PF01609 Transposase DDE domain CJO93_RS02415 PF13006 Insertion element 4 transposase N-terminal CJO93_RS02420 PF00912 Transglycosylase CJO93_RS02420 PF00905 Penicillin binding protein transpeptidase domain CJO93_RS02420 PF17092 Penicillin-binding protein OB-like domain CJO93_RS02425 PF11104 Type IV pilus assembly protein PilM; CJO93_RS02430 PF05137 Fimbrial assembly protein (PilN) CJO93_RS02445 PF11741 AMIN domain CJO93_RS02445 PF00263 Bacterial type II and III secretion system protein CJO93_RS02445 PF03958 Bacterial type II/III secretion system short domain CJO93_RS02445 PF07660 Secretin and TonB N terminus short domain CJO93_RS02450 PF01202 Shikimate kinase CJO93_RS02455 PF01761 3-dehydroquinate synthase CJO93_RS02460 PF13286 Phosphohydrolase-associated domain CJO93_RS02460 PF01966 HD domain CJO93_RS02465 PF03922 OmpW family CJO93_RS02475 PF04898 Glutamate synthase central domain CJO93_RS02475 PF01493 GXGXG motif CJO93_RS02475 PF00310 Glutamine amidotransferases class-II CJO93_RS02475 PF01645 Conserved region in glutamate synthase CJO93_RS02485 PF03401 Tripartite tricarboxylate transporter family receptor CJO93_RS02490 PF00005 ABC transporter CJO93_RS02495 PF02405 Permease MlaE CJO93_RS02500 PF02470 MlaD protein CJO93_RS02505 PF04333 MlaA lipoprotein CJO93_RS02520 PF00005 ABC transporter CJO93_RS02535 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CJO93_RS02540 PF01634 ATP phosphoribosyltransferase CJO93_RS02545 PF00815 Histidinol dehydrogenase CJO93_RS02550 PF00155 Aminotransferase class I and II CJO93_RS02555 PF00475 Imidazoleglycerol-phosphate dehydratase CJO93_RS02560 PF01914 MarC family integral membrane protein CJO93_RS02565 PF00117 Glutamine amidotransferase class-I CJO93_RS02570 PF00977 Histidine biosynthesis protein CJO93_RS02575 PF00977 Histidine biosynthesis protein CJO93_RS02580 PF01502 Phosphoribosyl-AMP cyclohydrolase CJO93_RS02585 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CJO93_RS02595 PF02416 mttA/Hcf106 family CJO93_RS02600 PF02416 mttA/Hcf106 family CJO93_RS02605 PF00902 Sec-independent protein translocase protein (TatC) CJO93_RS02610 PF13006 Insertion element 4 transposase N-terminal CJO93_RS02610 PF01609 Transposase DDE domain CJO93_RS02615 PF00005 ABC transporter CJO93_RS02615 PF03459 TOBE domain CJO93_RS02615 PF17912 MalK OB fold domain CJO93_RS02620 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS02630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS02630 PF00512 His Kinase A (phospho-acceptor) domain CJO93_RS02635 PF00072 Response regulator receiver domain CJO93_RS02635 PF00486 Transcriptional regulatory protein, C terminal CJO93_RS02645 PF13609 Gram-negative porin CJO93_RS02650 PF17820 PDZ domain CJO93_RS02650 PF13180 PDZ domain CJO93_RS02655 PF01784 NIF3 (NGG1p interacting factor 3) CJO93_RS02660 PF01741 Large-conductance mechanosensitive channel, MscL CJO93_RS02665 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CJO93_RS02665 PF00355 Rieske [2Fe-2S] domain CJO93_RS02670 PF00033 Cytochrome b/b6/petB CJO93_RS02670 PF00032 Cytochrome b(C-terminal)/b6/petD CJO93_RS02675 PF02167 Cytochrome C1 family CJO93_RS02680 PF00043 Glutathione S-transferase, C-terminal domain CJO93_RS02680 PF02798 Glutathione S-transferase, N-terminal domain CJO93_RS02685 PF04386 Stringent starvation protein B CJO93_RS02700 PF00072 Response regulator receiver domain CJO93_RS02700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS02715 PF00593 TonB dependent receptor CJO93_RS02715 PF07715 TonB-dependent Receptor Plug Domain CJO93_RS02720 PF04773 FecR protein CJO93_RS02720 PF16220 Domain of unknown function (DUF4880) CJO93_RS02730 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CJO93_RS02730 PF06481 COX Aromatic Rich Motif CJO93_RS02735 PF00115 Cytochrome C and Quinol oxidase polypeptide I CJO93_RS02740 PF00510 Cytochrome c oxidase subunit III CJO93_RS02745 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CJO93_RS02750 PF00005 ABC transporter CJO93_RS02750 PF12848 ABC transporter CJO93_RS02770 PF00535 Glycosyl transferase family 2 CJO93_RS02775 PF04349 Periplasmic glucan biosynthesis protein, MdoG CJO93_RS02790 PF00462 Glutaredoxin CJO93_RS02795 PF17827 PrmC N-terminal domain CJO93_RS02795 PF05175 Methyltransferase small domain CJO93_RS02805 PF00472 RF-1 domain CJO93_RS02805 PF03462 PCRF domain CJO93_RS02810 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CJO93_RS02810 PF01488 Shikimate / quinate 5-dehydrogenase CJO93_RS02810 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CJO93_RS02820 PF06071 Protein of unknown function (DUF933) CJO93_RS02820 PF01926 50S ribosome-binding GTPase CJO93_RS02830 PF01464 Transglycosylase SLT domain CJO93_RS02845 PF01494 FAD binding domain CJO93_RS02850 PF13098 Thioredoxin-like domain CJO93_RS02850 PF10411 Disulfide bond isomerase protein N-terminus CJO93_RS02855 PF08240 Alcohol dehydrogenase GroES-like domain CJO93_RS02855 PF00107 Zinc-binding dehydrogenase CJO93_RS02865 PF12805 FUSC-like inner membrane protein yccS CJO93_RS02880 PF03167 Uracil DNA glycosylase superfamily CJO93_RS02890 PF00218 Indole-3-glycerol phosphate synthase CJO93_RS02895 PF00591 Glycosyl transferase family, a/b domain CJO93_RS02895 PF02885 Glycosyl transferase family, helical bundle domain CJO93_RS02905 PF00117 Glutamine amidotransferase class-I CJO93_RS02910 PF04715 Anthranilate synthase component I, N terminal region CJO93_RS02910 PF00425 chorismate binding enzyme CJO93_RS02915 PF13419 Haloacid dehalogenase-like hydrolase CJO93_RS02920 PF00834 Ribulose-phosphate 3 epimerase family CJO93_RS02925 PF04379 ApaG domain CJO93_RS02940 PF14535 AMP-binding enzyme C-terminal domain CJO93_RS02940 PF00501 AMP-binding enzyme CJO93_RS02945 PF03061 Thioesterase superfamily CJO93_RS02950 PF00378 Enoyl-CoA hydratase/isomerase CJO93_RS02955 PF00378 Enoyl-CoA hydratase/isomerase CJO93_RS02985 PF07687 Peptidase dimerisation domain CJO93_RS02985 PF01546 Peptidase family M20/M25/M40 CJO93_RS02995 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS03000 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS03000 PF12911 N-terminal TM domain of oligopeptide transport permease C CJO93_RS03005 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJO93_RS03005 PF00005 ABC transporter CJO93_RS03010 PF00005 ABC transporter CJO93_RS03010 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJO93_RS03020 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CJO93_RS03025 PF00294 pfkB family carbohydrate kinase CJO93_RS03030 PF05524 PEP-utilising enzyme, N-terminal CJO93_RS03030 PF00381 PTS HPr component phosphorylation site CJO93_RS03030 PF00391 PEP-utilising enzyme, mobile domain CJO93_RS03030 PF02896 PEP-utilising enzyme, TIM barrel domain CJO93_RS03030 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CJO93_RS03035 PF00356 Bacterial regulatory proteins, lacI family CJO93_RS03040 PF01568 Molydopterin dinucleotide binding domain CJO93_RS03040 PF00384 Molybdopterin oxidoreductase CJO93_RS03040 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CJO93_RS03050 PF13193 AMP-binding enzyme C-terminal domain CJO93_RS03050 PF00501 AMP-binding enzyme CJO93_RS03055 PF00083 Sugar (and other) transporter CJO93_RS03055 PF07690 Major Facilitator Superfamily CJO93_RS03060 PF13609 Gram-negative porin CJO93_RS03065 PF03232 Ubiquinone biosynthesis protein COQ7 CJO93_RS03070 PF02381 MraZ protein, putative antitoxin-like CJO93_RS03075 PF01795 MraW methylase family CJO93_RS03085 PF00905 Penicillin binding protein transpeptidase domain CJO93_RS03085 PF03717 Penicillin-binding Protein dimerisation domain CJO93_RS03090 PF08245 Mur ligase middle domain CJO93_RS03090 PF02875 Mur ligase family, glutamate ligase domain CJO93_RS03095 PF01225 Mur ligase family, catalytic domain CJO93_RS03095 PF08245 Mur ligase middle domain CJO93_RS03095 PF02875 Mur ligase family, glutamate ligase domain CJO93_RS03100 PF00953 Glycosyl transferase family 4 CJO93_RS03100 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CJO93_RS03105 PF02875 Mur ligase family, glutamate ligase domain CJO93_RS03105 PF08245 Mur ligase middle domain CJO93_RS03110 PF01098 Cell cycle protein CJO93_RS03120 PF08245 Mur ligase middle domain CJO93_RS03120 PF02875 Mur ligase family, glutamate ligase domain CJO93_RS03120 PF01225 Mur ligase family, catalytic domain CJO93_RS03125 PF07478 D-ala D-ala ligase C-terminus CJO93_RS03125 PF01820 D-ala D-ala ligase N-terminus CJO93_RS03130 PF03799 Cell division protein FtsQ CJO93_RS03130 PF08478 POTRA domain, FtsQ-type CJO93_RS03135 PF02491 SHS2 domain inserted in FTSA CJO93_RS03140 PF00091 Tubulin/FtsZ family, GTPase domain CJO93_RS03140 PF12327 FtsZ family, C-terminal domain CJO93_RS03145 PF08534 Redoxin CJO93_RS03150 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CJO93_RS03160 PF01551 Peptidase family M23 CJO93_RS03160 PF01476 LysM domain CJO93_RS03160 PF08525 Opacity-associated protein A N-terminal motif CJO93_RS03165 PF07517 SecA DEAD-like domain CJO93_RS03165 PF02810 SEC-C motif CJO93_RS03165 PF01043 SecA preprotein cross-linking domain CJO93_RS03165 PF07516 SecA Wing and Scaffold domain CJO93_RS03170 PF01960 ArgJ family CJO93_RS03180 PF00293 NUDIX domain CJO93_RS03185 PF03884 DNA gyrase inhibitor YacG CJO93_RS03190 PF07072 Cell division protein CJO93_RS03195 PF01121 Dephospho-CoA kinase CJO93_RS03200 PF06750 Bacterial Peptidase A24 N-terminal domain CJO93_RS03200 PF01478 Type IV leader peptidase family CJO93_RS03205 PF00482 Type II secretion system (T2SS), protein F CJO93_RS03210 PF00437 Type II/IV secretion system protein CJO93_RS03210 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CJO93_RS03215 PF00571 CBS domain CJO93_RS03215 PF03471 Transporter associated domain CJO93_RS03215 PF01595 Cyclin M transmembrane N-terminal domain CJO93_RS03225 PF00348 Polyprenyl synthetase CJO93_RS03230 PF00829 Ribosomal prokaryotic L21 protein CJO93_RS03235 PF01016 Ribosomal L27 protein CJO93_RS03240 PF01926 50S ribosome-binding GTPase CJO93_RS03240 PF01018 GTP1/OBG CJO93_RS03245 PF00696 Amino acid kinase family CJO93_RS03245 PF01472 PUA domain CJO93_RS03255 PF00293 NUDIX domain CJO93_RS03260 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CJO93_RS03260 PF04073 Aminoacyl-tRNA editing domain CJO93_RS03260 PF03129 Anticodon binding domain CJO93_RS03265 PF01464 Transglycosylase SLT domain CJO93_RS03275 PF01914 MarC family integral membrane protein CJO93_RS03280 PF00156 Phosphoribosyl transferase domain CJO93_RS03285 PF02978 Signal peptide binding domain CJO93_RS03285 PF02881 SRP54-type protein, helical bundle domain CJO93_RS03285 PF00448 SRP54-type protein, GTPase domain CJO93_RS03300 PF00512 His Kinase A (phospho-acceptor) domain CJO93_RS03300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS03305 PF00072 Response regulator receiver domain CJO93_RS03305 PF02954 Bacterial regulatory protein, Fis family CJO93_RS03305 PF00158 Sigma-54 interaction domain CJO93_RS03310 PF01510 N-acetylmuramoyl-L-alanine amidase CJO93_RS03315 PF02867 Ribonucleotide reductase, barrel domain CJO93_RS03315 PF00317 Ribonucleotide reductase, all-alpha domain CJO93_RS03315 PF03477 ATP cone domain CJO93_RS03320 PF00268 Ribonucleotide reductase, small chain CJO93_RS03330 PF00892 EamA-like transporter family CJO93_RS03335 PF01037 Lrp/AsnC ligand binding domain CJO93_RS03345 PF00672 HAMP domain CJO93_RS03345 PF02203 Tar ligand binding domain homologue CJO93_RS03345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO93_RS03390 PF00294 pfkB family carbohydrate kinase CJO93_RS03395 PF08534 Redoxin CJO93_RS03410 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CJO93_RS03410 PF00289 Biotin carboxylase, N-terminal domain CJO93_RS03410 PF02785 Biotin carboxylase C-terminal domain CJO93_RS03415 PF00364 Biotin-requiring enzyme CJO93_RS03420 PF01220 Dehydroquinase class II CJO93_RS03425 PF00085 Thioredoxin CJO93_RS03435 PF01225 Mur ligase family, catalytic domain CJO93_RS03435 PF08245 Mur ligase middle domain CJO93_RS03435 PF02875 Mur ligase family, glutamate ligase domain CJO93_RS03440 PF05728 Uncharacterised protein family (UPF0227) CJO93_RS03445 PF04345 Chorismate lyase CJO93_RS03450 PF00773 RNB domain CJO93_RS03460 PF01488 Shikimate / quinate 5-dehydrogenase CJO93_RS03460 PF08501 Shikimate dehydrogenase substrate binding domain CJO93_RS03460 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CJO93_RS03465 PF00912 Transglycosylase CJO93_RS03475 PF01544 CorA-like Mg2+ transporter protein CJO93_RS03480 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CJO93_RS03490 PF00994 Probable molybdopterin binding domain CJO93_RS03490 PF02464 Competence-damaged protein CJO93_RS03490 PF18146 Damage-inducible protein CinA KH domain CJO93_RS03495 PF04608 Phosphatidylglycerophosphatase A CJO93_RS03500 PF02769 AIR synthase related protein, C-terminal domain CJO93_RS03500 PF00586 AIR synthase related protein, N-terminal domain CJO93_RS03505 PF01515 Phosphate acetyl/butaryl transferase CJO93_RS03505 PF03949 Malic enzyme, NAD binding domain CJO93_RS03505 PF00390 Malic enzyme, N-terminal domain CJO93_RS03525 PF04452 RNA methyltransferase CJO93_RS03535 PF03466 LysR substrate binding domain CJO93_RS03535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS03540 PF13609 Gram-negative porin CJO93_RS03550 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CJO93_RS03555 PF00005 ABC transporter CJO93_RS03560 PF02653 Branched-chain amino acid transport system / permease component CJO93_RS03565 PF08450 SMP-30/Gluconolactonase/LRE-like region CJO93_RS03580 PF01081 KDPG and KHG aldolase CJO93_RS03585 PF13378 Enolase C-terminal domain-like CJO93_RS03585 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CJO93_RS03590 PF02780 Transketolase, C-terminal domain CJO93_RS03590 PF02779 Transketolase, pyrimidine binding domain CJO93_RS03590 PF00456 Transketolase, thiamine diphosphate binding domain CJO93_RS03595 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CJO93_RS03595 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CJO93_RS03600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS03600 PF03466 LysR substrate binding domain CJO93_RS03605 PF01475 Ferric uptake regulator family CJO93_RS03610 PF04355 SmpA / OmlA family CJO93_RS03615 PF01113 Dihydrodipicolinate reductase, N-terminus CJO93_RS03615 PF05173 Dihydrodipicolinate reductase, C-terminus CJO93_RS03620 PF09334 tRNA synthetases class I (M) CJO93_RS03620 PF13603 Leucyl-tRNA synthetase, Domain 2 CJO93_RS03620 PF00133 tRNA synthetases class I (I, L, M and V) CJO93_RS03620 PF08264 Anticodon-binding domain of tRNA CJO93_RS03630 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CJO93_RS03630 PF06144 DNA polymerase III, delta subunit CJO93_RS03635 PF00171 Aldehyde dehydrogenase family CJO93_RS03640 PF03653 Uncharacterised protein family (UPF0093) CJO93_RS03645 PF01170 Putative RNA methylase family UPF0020 CJO93_RS03645 PF02926 THUMP domain CJO93_RS03650 PF00072 Response regulator receiver domain CJO93_RS03650 PF02954 Bacterial regulatory protein, Fis family CJO93_RS03650 PF00158 Sigma-54 interaction domain CJO93_RS03655 PF00512 His Kinase A (phospho-acceptor) domain CJO93_RS03655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS03655 PF00989 PAS fold CJO93_RS03660 PF00512 His Kinase A (phospho-acceptor) domain CJO93_RS03660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS03670 PF00072 Response regulator receiver domain CJO93_RS03675 PF02233 NAD(P) transhydrogenase beta subunit CJO93_RS03680 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CJO93_RS03685 PF02261 Aspartate decarboxylase CJO93_RS03690 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CJO93_RS03690 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CJO93_RS03695 PF07715 TonB-dependent Receptor Plug Domain CJO93_RS03695 PF00593 TonB dependent receptor CJO93_RS03705 PF07690 Major Facilitator Superfamily CJO93_RS03710 PF13533 Biotin-lipoyl like CJO93_RS03720 PF00293 NUDIX domain CJO93_RS03730 PF01645 Conserved region in glutamate synthase CJO93_RS03735 PF00043 Glutathione S-transferase, C-terminal domain CJO93_RS03735 PF13417 Glutathione S-transferase, N-terminal domain CJO93_RS03740 PF08328 Adenylosuccinate lyase C-terminal CJO93_RS03740 PF00206 Lyase CJO93_RS03745 PF01292 Prokaryotic cytochrome b561 CJO93_RS03750 PF04264 YceI-like domain CJO93_RS03755 PF04264 YceI-like domain CJO93_RS03760 PF07549 SecD/SecF GG Motif CJO93_RS03760 PF02355 Protein export membrane protein CJO93_RS03765 PF07549 SecD/SecF GG Motif CJO93_RS03765 PF13721 SecD export protein N-terminal TM region CJO93_RS03765 PF02355 Protein export membrane protein CJO93_RS03770 PF02699 Preprotein translocase subunit CJO93_RS03775 PF01702 Queuine tRNA-ribosyltransferase CJO93_RS03780 PF02547 Queuosine biosynthesis protein CJO93_RS03785 PF00270 DEAD/DEAH box helicase CJO93_RS03785 PF00271 Helicase conserved C-terminal domain CJO93_RS03785 PF17191 RecG wedge domain CJO93_RS03805 PF14031 Putative serine dehydratase domain CJO93_RS03805 PF01168 Alanine racemase, N-terminal domain CJO93_RS03810 PF03466 LysR substrate binding domain CJO93_RS03810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS03825 PF01037 Lrp/AsnC ligand binding domain CJO93_RS03830 PF01546 Peptidase family M20/M25/M40 CJO93_RS03830 PF07687 Peptidase dimerisation domain CJO93_RS03835 PF04101 Glycosyltransferase family 28 C-terminal domain CJO93_RS03855 PF05598 Transposase domain (DUF772) CJO93_RS03855 PF01609 Transposase DDE domain CJO93_RS03900 PF00313 'Cold-shock' DNA-binding domain CJO93_RS03975 PF03466 LysR substrate binding domain CJO93_RS03975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS03990 PF00210 Ferritin-like domain CJO93_RS03995 PF01040 UbiA prenyltransferase family CJO93_RS04005 PF03807 NADP oxidoreductase coenzyme F420-dependent CJO93_RS04005 PF14748 Pyrroline-5-carboxylate reductase dimerisation CJO93_RS04010 PF01168 Alanine racemase, N-terminal domain CJO93_RS04015 PF00437 Type II/IV secretion system protein CJO93_RS04020 PF00437 Type II/IV secretion system protein CJO93_RS04055 PF00255 Glutathione peroxidase CJO93_RS04065 PF07883 Cupin domain CJO93_RS04075 PF04172 LrgB-like family CJO93_RS04080 PF03788 LrgA family CJO93_RS04085 PF13183 4Fe-4S dicluster domain CJO93_RS04085 PF02754 Cysteine-rich domain CJO93_RS04090 PF01565 FAD binding domain CJO93_RS04095 PF01565 FAD binding domain CJO93_RS04095 PF02913 FAD linked oxidases, C-terminal domain CJO93_RS04100 PF03466 LysR substrate binding domain CJO93_RS04100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS04105 PF02913 FAD linked oxidases, C-terminal domain CJO93_RS04105 PF01565 FAD binding domain CJO93_RS04110 PF01923 Cobalamin adenosyltransferase CJO93_RS04115 PF05552 Conserved TM helix CJO93_RS04115 PF00924 Mechanosensitive ion channel CJO93_RS04125 PF00793 DAHP synthetase I family CJO93_RS04130 PF01523 Putative modulator of DNA gyrase CJO93_RS04135 PF00795 Carbon-nitrogen hydrolase CJO93_RS04145 PF08335 GlnD PII-uridylyltransferase CJO93_RS04145 PF03710 Glutamate-ammonia ligase adenylyltransferase CJO93_RS04155 PF00082 Subtilase family CJO93_RS04155 PF01483 Proprotein convertase P-domain CJO93_RS04160 PF04151 Bacterial pre-peptidase C-terminal domain CJO93_RS04160 PF00082 Subtilase family CJO93_RS04170 PF02463 RecF/RecN/SMC N terminal domain CJO93_RS04175 PF01513 ATP-NAD kinase CJO93_RS04180 PF01628 HrcA protein C terminal domain CJO93_RS04185 PF00392 Bacterial regulatory proteins, gntR family CJO93_RS04185 PF07702 UTRA domain CJO93_RS04195 PF00221 Aromatic amino acid lyase CJO93_RS04200 PF00491 Arginase family CJO93_RS04205 PF01979 Amidohydrolase family CJO93_RS04210 PF00762 Ferrochelatase CJO93_RS04215 PF01479 S4 domain CJO93_RS04230 PF01025 GrpE CJO93_RS04240 PF01272 Transcription elongation factor, GreA/GreB, C-term CJO93_RS04240 PF14760 Rnk N-terminus CJO93_RS04245 PF00012 Hsp70 protein CJO93_RS04250 PF01556 DnaJ C terminal domain CJO93_RS04250 PF00226 DnaJ domain CJO93_RS04250 PF00684 DnaJ central domain CJO93_RS04255 PF00117 Glutamine amidotransferase class-I CJO93_RS04255 PF00425 chorismate binding enzyme CJO93_RS04255 PF04715 Anthranilate synthase component I, N terminal region CJO93_RS04260 PF00005 ABC transporter CJO93_RS04265 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS04270 PF02548 Ketopantoate hydroxymethyltransferase CJO93_RS04280 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CJO93_RS04285 PF12626 Polymerase A arginine-rich C-terminus CJO93_RS04285 PF12627 Probable RNA and SrmB- binding site of polymerase A CJO93_RS04285 PF01743 Poly A polymerase head domain CJO93_RS04295 PF00308 Bacterial dnaA protein CJO93_RS04300 PF01594 AI-2E family transporter CJO93_RS04305 PF02769 AIR synthase related protein, C-terminal domain CJO93_RS04305 PF00586 AIR synthase related protein, N-terminal domain CJO93_RS04320 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CJO93_RS04320 PF02805 Metal binding domain of Ada CJO93_RS04320 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CJO93_RS04320 PF12833 Helix-turn-helix domain CJO93_RS04330 PF13532 2OG-Fe(II) oxygenase superfamily CJO93_RS04335 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA CJO93_RS04340 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CJO93_RS04340 PF12833 Helix-turn-helix domain CJO93_RS04340 PF02805 Metal binding domain of Ada CJO93_RS04340 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CJO93_RS04345 PF00583 Acetyltransferase (GNAT) family CJO93_RS04355 PF01119 DNA mismatch repair protein, C-terminal domain CJO93_RS04355 PF08676 MutL C terminal dimerisation domain CJO93_RS04360 PF02470 MlaD protein CJO93_RS04375 PF09335 SNARE associated Golgi protein CJO93_RS04380 PF13369 Transglutaminase-like superfamily CJO93_RS04390 PF01649 Ribosomal protein S20 CJO93_RS04400 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CJO93_RS04400 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CJO93_RS04425 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CJO93_RS04425 PF01565 FAD binding domain CJO93_RS04430 PF04461 Protein of unknown function (DUF520) CJO93_RS04435 PF01156 Inosine-uridine preferring nucleoside hydrolase CJO93_RS04440 PF01804 Penicillin amidase CJO93_RS04445 PF02660 Glycerol-3-phosphate acyltransferase CJO93_RS04450 PF04073 Aminoacyl-tRNA editing domain CJO93_RS04455 PF00589 Phage integrase family CJO93_RS04455 PF02899 Phage integrase, N-terminal SAM-like domain CJO93_RS04460 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CJO93_RS04460 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CJO93_RS04470 PF08331 Domain of unknown function (DUF1730) CJO93_RS04475 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CJO93_RS04480 PF11741 AMIN domain CJO93_RS04480 PF01520 N-acetylmuramoyl-L-alanine amidase CJO93_RS04485 PF13593 SBF-like CPA transporter family (DUF4137) CJO93_RS04490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS04490 PF03466 LysR substrate binding domain CJO93_RS04495 PF00171 Aldehyde dehydrogenase family CJO93_RS04500 PF03466 LysR substrate binding domain CJO93_RS04500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS04505 PF00106 short chain dehydrogenase CJO93_RS04510 PF05191 Adenylate kinase, active site lid CJO93_RS04515 PF02348 Cytidylyltransferase CJO93_RS04520 PF03966 Trm112p-like protein CJO93_RS04525 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CJO93_RS04535 PF01618 MotA/TolQ/ExbB proton channel family CJO93_RS04540 PF02601 Exonuclease VII, large subunit CJO93_RS04540 PF13742 OB-fold nucleic acid binding domain CJO93_RS04545 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CJO93_RS04545 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CJO93_RS04560 PF00571 CBS domain CJO93_RS04560 PF02163 Peptidase family M50 CJO93_RS04570 PF05962 HutD CJO93_RS04575 PF00216 Bacterial DNA-binding protein CJO93_RS04600 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS04605 PF11871 Domain of unknown function (DUF3391) CJO93_RS04605 PF01966 HD domain CJO93_RS04620 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJO93_RS04625 PF07687 Peptidase dimerisation domain CJO93_RS04625 PF01546 Peptidase family M20/M25/M40 CJO93_RS04650 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CJO93_RS04650 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CJO93_RS04655 PF00730 HhH-GPD superfamily base excision DNA repair protein CJO93_RS04655 PF06029 AlkA N-terminal domain CJO93_RS04655 PF12833 Helix-turn-helix domain CJO93_RS04655 PF02805 Metal binding domain of Ada CJO93_RS04665 PF04228 Putative neutral zinc metallopeptidase CJO93_RS04680 PF07681 DoxX CJO93_RS04685 PF07690 Major Facilitator Superfamily CJO93_RS04690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS04690 PF03466 LysR substrate binding domain CJO93_RS04695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS04695 PF03466 LysR substrate binding domain CJO93_RS04700 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme CJO93_RS04705 PF12706 Beta-lactamase superfamily domain CJO93_RS04715 PF03150 Di-haem cytochrome c peroxidase CJO93_RS04730 PF00180 Isocitrate/isopropylmalate dehydrogenase CJO93_RS04750 PF00313 'Cold-shock' DNA-binding domain CJO93_RS04755 PF02617 ATP-dependent Clp protease adaptor protein ClpS CJO93_RS04760 PF17871 AAA lid domain CJO93_RS04760 PF00004 ATPase family associated with various cellular activities (AAA) CJO93_RS04760 PF02861 Clp amino terminal domain, pathogenicity island component CJO93_RS04760 PF07724 AAA domain (Cdc48 subfamily) CJO93_RS04760 PF10431 C-terminal, D2-small domain, of ClpB protein CJO93_RS04765 PF00692 dUTPase CJO93_RS04770 PF00296 Luciferase-like monooxygenase CJO93_RS04775 PF02441 Flavoprotein CJO93_RS04775 PF04127 DNA / pantothenate metabolism flavoprotein CJO93_RS04785 PF01252 Signal peptidase (SPase) II CJO93_RS04790 PF06827 Zinc finger found in FPG and IleRS CJO93_RS04790 PF00133 tRNA synthetases class I (I, L, M and V) CJO93_RS04790 PF08264 Anticodon-binding domain of tRNA CJO93_RS04795 PF06574 FAD synthetase CJO93_RS04795 PF01687 Riboflavin kinase CJO93_RS04800 PF00072 Response regulator receiver domain CJO93_RS04800 PF09308 LuxQ, periplasmic CJO93_RS04800 PF00512 His Kinase A (phospho-acceptor) domain CJO93_RS04800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS04805 PF00072 Response regulator receiver domain CJO93_RS04805 PF00196 Bacterial regulatory proteins, luxR family CJO93_RS04810 PF00551 Formyl transferase CJO93_RS04815 PF01189 16S rRNA methyltransferase RsmB/F CJO93_RS04815 PF01029 NusB family CJO93_RS04820 PF13091 PLD-like domain CJO93_RS04825 PF00924 Mechanosensitive ion channel CJO93_RS04825 PF12794 Mechanosensitive ion channel inner membrane domain 1 CJO93_RS04825 PF12795 Mechanosensitive ion channel porin domain CJO93_RS04835 PF02445 Quinolinate synthetase A protein CJO93_RS04840 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CJO93_RS04840 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CJO93_RS04845 PF02910 Fumarate reductase flavoprotein C-term CJO93_RS04845 PF00890 FAD binding domain CJO93_RS04850 PF00471 Ribosomal protein L33 CJO93_RS04855 PF00830 Ribosomal L28 family CJO93_RS04860 PF04002 RadC-like JAB domain CJO93_RS04865 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CJO93_RS04870 PF02401 LytB protein CJO93_RS04875 PF13458 Periplasmic binding protein CJO93_RS04880 PF02653 Branched-chain amino acid transport system / permease component CJO93_RS04885 PF11862 Domain of unknown function (DUF3382) CJO93_RS04885 PF02653 Branched-chain amino acid transport system / permease component CJO93_RS04890 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJO93_RS04890 PF00005 ABC transporter CJO93_RS04895 PF00005 ABC transporter CJO93_RS04905 PF00202 Aminotransferase class-III CJO93_RS04910 PF00970 Oxidoreductase FAD-binding domain CJO93_RS04910 PF00111 2Fe-2S iron-sulfur cluster binding domain CJO93_RS04910 PF00175 Oxidoreductase NAD-binding domain CJO93_RS04920 PF00990 Diguanylate cyclase, GGDEF domain CJO93_RS04940 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CJO93_RS04940 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CJO93_RS04950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS04950 PF03466 LysR substrate binding domain CJO93_RS04960 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CJO93_RS04960 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CJO93_RS04970 PF01507 Phosphoadenosine phosphosulfate reductase family CJO93_RS04975 PF01507 Phosphoadenosine phosphosulfate reductase family CJO93_RS04980 PF00009 Elongation factor Tu GTP binding domain CJO93_RS04985 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJO93_RS05010 PF00883 Cytosol aminopeptidase family, catalytic domain CJO93_RS05010 PF02789 Cytosol aminopeptidase family, N-terminal domain CJO93_RS05015 PF04364 DNA polymerase III chi subunit, HolC CJO93_RS05025 PF13006 Insertion element 4 transposase N-terminal CJO93_RS05025 PF01609 Transposase DDE domain CJO93_RS05030 PF00920 Dehydratase family CJO93_RS05035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS05035 PF03466 LysR substrate binding domain CJO93_RS05040 PF01790 Prolipoprotein diacylglyceryl transferase CJO93_RS05070 PF07715 TonB-dependent Receptor Plug Domain CJO93_RS05070 PF00593 TonB dependent receptor CJO93_RS05075 PF01032 FecCD transport family CJO93_RS05080 PF00005 ABC transporter CJO93_RS05085 PF02277 Phosphoribosyltransferase CJO93_RS05090 PF02654 Cobalamin-5-phosphate synthase CJO93_RS05100 PF01497 Periplasmic binding protein CJO93_RS05105 PF00155 Aminotransferase class I and II CJO93_RS05110 PF17113 Regulatory signalling modulator protein AmpE CJO93_RS05110 PF03186 CobD/Cbib protein CJO93_RS05115 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CJO93_RS05120 PF07685 CobB/CobQ-like glutamine amidotransferase domain CJO93_RS05120 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CJO93_RS05135 PF02569 Pantoate-beta-alanine ligase CJO93_RS05140 PF02616 Segregation and condensation protein ScpA CJO93_RS05155 PF04357 TamB, inner membrane protein subunit of TAM complex CJO93_RS05165 PF09334 tRNA synthetases class I (M) CJO93_RS05165 PF01588 Putative tRNA binding domain CJO93_RS05170 PF00691 OmpA family CJO93_RS05170 PF05736 OprF membrane domain CJO93_RS05175 PF10609 NUBPL iron-transfer P-loop NTPase CJO93_RS05205 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CJO93_RS05205 PF00384 Molybdopterin oxidoreductase CJO93_RS05205 PF01568 Molydopterin dinucleotide binding domain CJO93_RS05210 PF13247 4Fe-4S dicluster domain CJO93_RS05230 PF00080 Copper/zinc superoxide dismutase (SODC) CJO93_RS05235 PF02634 FdhD/NarQ family CJO93_RS05240 PF00692 dUTPase CJO93_RS05245 PF01276 Orn/Lys/Arg decarboxylase, major domain CJO93_RS05245 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CJO93_RS05245 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CJO93_RS05285 PF14698 Argininosuccinate lyase C-terminal CJO93_RS05285 PF00206 Lyase CJO93_RS05310 PF00311 Phosphoenolpyruvate carboxylase CJO93_RS05315 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CJO93_RS05315 PF03900 Porphobilinogen deaminase, C-terminal domain CJO93_RS05320 PF02602 Uroporphyrinogen-III synthase HemD CJO93_RS05340 PF07690 Major Facilitator Superfamily CJO93_RS05350 PF00171 Aldehyde dehydrogenase family CJO93_RS05355 PF00719 Inorganic pyrophosphatase CJO93_RS05370 PF02540 NAD synthase CJO93_RS05370 PF00795 Carbon-nitrogen hydrolase CJO93_RS05375 PF01209 ubiE/COQ5 methyltransferase family CJO93_RS05380 PF00543 Nitrogen regulatory protein P-II CJO93_RS05385 PF03458 UPF0126 domain CJO93_RS05395 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO93_RS05400 PF01580 FtsK/SpoIIIE family CJO93_RS05400 PF17854 FtsK alpha domain CJO93_RS05400 PF09397 Ftsk gamma domain CJO93_RS05400 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CJO93_RS05405 PF03548 Outer membrane lipoprotein carrier protein LolA CJO93_RS05415 PF16193 AAA C-terminal domain CJO93_RS05415 PF12002 MgsA AAA+ ATPase C terminal CJO93_RS05415 PF00004 ATPase family associated with various cellular activities (AAA) CJO93_RS05420 PF16193 AAA C-terminal domain CJO93_RS05420 PF12002 MgsA AAA+ ATPase C terminal CJO93_RS05420 PF00004 ATPase family associated with various cellular activities (AAA) CJO93_RS05425 PF01555 DNA methylase CJO93_RS05445 PF02403 Seryl-tRNA synthetase N-terminal domain CJO93_RS05445 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CJO93_RS05455 PF13356 Arm DNA-binding domain CJO93_RS05455 PF00589 Phage integrase family CJO93_RS05465 PF01047 MarR family CJO93_RS05470 PF07690 Major Facilitator Superfamily CJO93_RS05475 PF07690 Major Facilitator Superfamily CJO93_RS05480 PF13411 MerR HTH family regulatory protein CJO93_RS05485 PF00106 short chain dehydrogenase CJO93_RS05500 PF00196 Bacterial regulatory proteins, luxR family CJO93_RS05500 PF00072 Response regulator receiver domain CJO93_RS05505 PF17200 Single Cache domain 2 CJO93_RS05505 PF07730 Histidine kinase CJO93_RS05510 PF07963 Prokaryotic N-terminal methylation motif CJO93_RS05510 PF08334 Type II secretion system (T2SS), protein G CJO93_RS05515 PF00482 Type II secretion system (T2SS), protein F CJO93_RS05520 PF00437 Type II/IV secretion system protein CJO93_RS05545 PF00263 Bacterial type II and III secretion system protein CJO93_RS05545 PF03958 Bacterial type II/III secretion system short domain CJO93_RS05555 PF07963 Prokaryotic N-terminal methylation motif CJO93_RS05555 PF08334 Type II secretion system (T2SS), protein G CJO93_RS05570 PF07732 Multicopper oxidase CJO93_RS05570 PF00394 Multicopper oxidase CJO93_RS05605 PF01464 Transglycosylase SLT domain CJO93_RS05625 PF00578 AhpC/TSA family CJO93_RS05635 PF06903 VirK protein CJO93_RS05665 PF02627 Carboxymuconolactone decarboxylase family CJO93_RS05670 PF00571 CBS domain CJO93_RS05670 PF03471 Transporter associated domain CJO93_RS05670 PF01595 Cyclin M transmembrane N-terminal domain CJO93_RS05710 PF01266 FAD dependent oxidoreductase CJO93_RS05715 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJO93_RS05720 PF00005 ABC transporter CJO93_RS05725 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS05730 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS05735 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJO93_RS05745 PF01614 Bacterial transcriptional regulator CJO93_RS05745 PF09339 IclR helix-turn-helix domain CJO93_RS05750 PF01144 Coenzyme A transferase CJO93_RS05755 PF01144 Coenzyme A transferase CJO93_RS05760 PF00108 Thiolase, N-terminal domain CJO93_RS05760 PF02803 Thiolase, C-terminal domain CJO93_RS05765 PF10397 Adenylosuccinate lyase C-terminus CJO93_RS05765 PF00206 Lyase CJO93_RS05770 PF12146 Serine aminopeptidase, S33 CJO93_RS05775 PF02627 Carboxymuconolactone decarboxylase family CJO93_RS05790 PF00005 ABC transporter CJO93_RS05790 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJO93_RS05795 PF00005 ABC transporter CJO93_RS05800 PF13458 Periplasmic binding protein CJO93_RS05805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS05805 PF03466 LysR substrate binding domain CJO93_RS05810 PF01494 FAD binding domain CJO93_RS05815 PF03537 Glycoside-hydrolase family GH114 CJO93_RS05825 PF01176 Translation initiation factor 1A / IF-1 CJO93_RS05835 PF00483 Nucleotidyl transferase CJO93_RS05840 PF10458 Valyl tRNA synthetase tRNA binding arm CJO93_RS05840 PF08264 Anticodon-binding domain of tRNA CJO93_RS05840 PF00133 tRNA synthetases class I (I, L, M and V) CJO93_RS05845 PF00580 UvrD/REP helicase N-terminal domain CJO93_RS05845 PF13361 UvrD-like helicase C-terminal domain CJO93_RS05855 PF01636 Phosphotransferase enzyme family CJO93_RS05865 PF03641 Possible lysine decarboxylase CJO93_RS05870 PF01367 5'-3' exonuclease, C-terminal SAM fold CJO93_RS05870 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CJO93_RS05870 PF00476 DNA polymerase family A CJO93_RS05870 PF01612 3'-5' exonuclease CJO93_RS05875 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO93_RS05880 PF01738 Dienelactone hydrolase family CJO93_RS05890 PF13006 Insertion element 4 transposase N-terminal CJO93_RS05890 PF01609 Transposase DDE domain CJO93_RS05895 PF00581 Rhodanese-like domain CJO93_RS05910 PF02609 Exonuclease VII small subunit CJO93_RS05915 PF00348 Polyprenyl synthetase CJO93_RS05920 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CJO93_RS05920 PF02779 Transketolase, pyrimidine binding domain CJO93_RS05920 PF02780 Transketolase, C-terminal domain CJO93_RS05925 PF02649 Type I GTP cyclohydrolase folE2 CJO93_RS05930 PF00814 Glycoprotease family CJO93_RS05940 PF09424 Yqey-like protein CJO93_RS05945 PF10410 DnaB-helicase binding domain of primase CJO93_RS05945 PF08275 DNA primase catalytic core, N-terminal domain CJO93_RS05945 PF08278 DNA primase DnaG DnaB-binding CJO93_RS05945 PF01807 CHC2 zinc finger CJO93_RS05950 PF00140 Sigma-70 factor, region 1.2 CJO93_RS05950 PF04545 Sigma-70, region 4 CJO93_RS05950 PF03979 Sigma-70 factor, region 1.1 CJO93_RS05950 PF04546 Sigma-70, non-essential region CJO93_RS05950 PF04539 Sigma-70 region 3 CJO93_RS05950 PF04542 Sigma-70 region 2 CJO93_RS05960 PF00753 Metallo-beta-lactamase superfamily CJO93_RS05970 PF00258 Flavodoxin CJO93_RS05970 PF01613 Flavin reductase like domain CJO93_RS05975 PF00270 DEAD/DEAH box helicase CJO93_RS05975 PF00271 Helicase conserved C-terminal domain CJO93_RS05980 PF00749 tRNA synthetases class I (E and Q), catalytic domain CJO93_RS05985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS05985 PF03466 LysR substrate binding domain CJO93_RS05990 PF17954 Quercetinase C-terminal cupin domain CJO93_RS05990 PF02678 Pirin CJO93_RS05995 PF03358 NADPH-dependent FMN reductase CJO93_RS06000 PF17773 UPF0176 acylphosphatase like domain CJO93_RS06005 PF02811 PHP domain CJO93_RS06005 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CJO93_RS06005 PF01336 OB-fold nucleic acid binding domain CJO93_RS06005 PF14579 Helix-hairpin-helix motif CJO93_RS06005 PF07733 Bacterial DNA polymerase III alpha NTPase domain CJO93_RS06020 PF00535 Glycosyl transferase family 2 CJO93_RS06030 PF00005 ABC transporter CJO93_RS06030 PF00664 ABC transporter transmembrane region CJO93_RS06050 PF10150 Ribonuclease E/G family CJO93_RS06050 PF00575 S1 RNA binding domain CJO93_RS06055 PF02545 Maf-like protein CJO93_RS06060 PF02590 Predicted SPOUT methyltransferase CJO93_RS06070 PF01467 Cytidylyltransferase-like CJO93_RS06075 PF01218 Coproporphyrinogen III oxidase CJO93_RS06080 PF02844 Phosphoribosylglycinamide synthetase, N domain CJO93_RS06080 PF02843 Phosphoribosylglycinamide synthetase, C domain CJO93_RS06080 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CJO93_RS06085 PF01709 Transcriptional regulator CJO93_RS06090 PF05872 Bacterial protein of unknown function (DUF853) CJO93_RS06100 PF00892 EamA-like transporter family CJO93_RS06110 PF02142 MGS-like domain CJO93_RS06115 PF08240 Alcohol dehydrogenase GroES-like domain CJO93_RS06115 PF00107 Zinc-binding dehydrogenase CJO93_RS06150 PF02608 ABC transporter substrate-binding protein PnrA-like CJO93_RS06165 PF00005 ABC transporter CJO93_RS06170 PF07690 Major Facilitator Superfamily CJO93_RS06175 PF02682 Carboxyltransferase domain, subdomain C and D CJO93_RS06180 PF02626 Carboxyltransferase domain, subdomain A and B CJO93_RS06185 PF03746 LamB/YcsF family CJO93_RS06200 PF03480 Bacterial extracellular solute-binding protein, family 7 CJO93_RS06205 PF01470 Pyroglutamyl peptidase CJO93_RS06220 PF12706 Beta-lactamase superfamily domain CJO93_RS06230 PF04055 Radical SAM superfamily CJO93_RS06230 PF06969 HemN C-terminal domain CJO93_RS06235 PF01725 Ham1 family CJO93_RS06240 PF03725 3' exoribonuclease family, domain 2 CJO93_RS06240 PF01138 3' exoribonuclease family, domain 1 CJO93_RS06250 PF00069 Protein kinase domain CJO93_RS06250 PF08239 Bacterial SH3 domain CJO93_RS06255 PF08340 Domain of unknown function (DUF1732) CJO93_RS06255 PF03755 YicC-like family, N-terminal region CJO93_RS06260 PF00625 Guanylate kinase CJO93_RS06265 PF01192 RNA polymerase Rpb6 CJO93_RS06270 PF04607 Region found in RelA / SpoT proteins CJO93_RS06270 PF02824 TGS domain CJO93_RS06270 PF13291 ACT domain CJO93_RS06280 PF01272 Transcription elongation factor, GreA/GreB, C-term CJO93_RS06280 PF03449 Transcription elongation factor, N-terminal CJO93_RS06300 PF04972 BON domain CJO93_RS06300 PF01476 LysM domain CJO93_RS06310 PF00294 pfkB family carbohydrate kinase CJO93_RS06315 PF08013 Tagatose 6 phosphate kinase CJO93_RS06325 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS06330 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS06335 PF13419 Haloacid dehalogenase-like hydrolase CJO93_RS06340 PF00005 ABC transporter CJO93_RS06340 PF17912 MalK OB fold domain CJO93_RS06350 PF01638 HxlR-like helix-turn-helix CJO93_RS06355 PF00342 Phosphoglucose isomerase CJO93_RS06355 PF00342 Phosphoglucose isomerase CJO93_RS06360 PF13609 Gram-negative porin CJO93_RS06385 PF08125 Mannitol dehydrogenase C-terminal domain CJO93_RS06385 PF01232 Mannitol dehydrogenase Rossmann domain CJO93_RS06390 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CJO93_RS06390 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CJO93_RS06395 PF00325 Bacterial regulatory proteins, crp family CJO93_RS06395 PF04198 Putative sugar-binding domain CJO93_RS06405 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CJO93_RS06410 PF11940 Domain of unknown function (DUF3458) Ig-like fold CJO93_RS06410 PF01433 Peptidase family M1 domain CJO93_RS06410 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CJO93_RS06420 PF00390 Malic enzyme, N-terminal domain CJO93_RS06420 PF01515 Phosphate acetyl/butaryl transferase CJO93_RS06420 PF03949 Malic enzyme, NAD binding domain CJO93_RS06430 PF09349 OHCU decarboxylase CJO93_RS06430 PF01014 Uricase CJO93_RS06440 PF01979 Amidohydrolase family CJO93_RS06445 PF00860 Permease family CJO93_RS06455 PF00576 HIUase/Transthyretin family CJO93_RS06470 PF01609 Transposase DDE domain CJO93_RS06470 PF05598 Transposase domain (DUF772) CJO93_RS06475 PF01266 FAD dependent oxidoreductase CJO93_RS06480 PF00083 Sugar (and other) transporter CJO93_RS06485 PF00701 Dihydrodipicolinate synthetase family CJO93_RS06495 PF00892 EamA-like transporter family CJO93_RS06500 PF13609 Gram-negative porin CJO93_RS06510 PF00005 ABC transporter CJO93_RS06515 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS06520 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS06530 PF07729 FCD domain CJO93_RS06530 PF00392 Bacterial regulatory proteins, gntR family CJO93_RS06550 PF01169 Uncharacterized protein family UPF0016 CJO93_RS06555 PF01979 Amidohydrolase family CJO93_RS06560 PF00962 Adenosine/AMP deaminase CJO93_RS06570 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CJO93_RS06570 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CJO93_RS06575 PF01799 [2Fe-2S] binding domain CJO93_RS06575 PF00111 2Fe-2S iron-sulfur cluster binding domain CJO93_RS06575 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CJO93_RS06575 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CJO93_RS06580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS06580 PF03466 LysR substrate binding domain CJO93_RS06585 PF12849 PBP superfamily domain CJO93_RS06615 PF03641 Possible lysine decarboxylase CJO93_RS06620 PF00440 Bacterial regulatory proteins, tetR family CJO93_RS06620 PF08359 YsiA-like protein, C-terminal region CJO93_RS06625 PF01219 Prokaryotic diacylglycerol kinase CJO93_RS06630 PF13439 Glycosyltransferase Family 4 CJO93_RS06630 PF00534 Glycosyl transferases group 1 CJO93_RS06665 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CJO93_RS06665 PF00205 Thiamine pyrophosphate enzyme, central domain CJO93_RS06665 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CJO93_RS06670 PF10369 Small subunit of acetolactate synthase CJO93_RS06675 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CJO93_RS06675 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CJO93_RS06680 PF02666 Phosphatidylserine decarboxylase CJO93_RS06685 PF01066 CDP-alcohol phosphatidyltransferase CJO93_RS06690 PF00682 HMGL-like CJO93_RS06690 PF08502 LeuA allosteric (dimerisation) domain CJO93_RS06700 PF13458 Periplasmic binding protein CJO93_RS06705 PF00312 Ribosomal protein S15 CJO93_RS06710 PF00013 KH domain CJO93_RS06710 PF00575 S1 RNA binding domain CJO93_RS06710 PF03725 3' exoribonuclease family, domain 2 CJO93_RS06710 PF01138 3' exoribonuclease family, domain 1 CJO93_RS06710 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CJO93_RS06725 PF00121 Triosephosphate isomerase CJO93_RS06730 PF03840 Preprotein translocase SecG subunit CJO93_RS06740 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CJO93_RS06745 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CJO93_RS06750 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CJO93_RS06755 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CJO93_RS06765 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CJO93_RS06765 PF10531 SLBB domain CJO93_RS06765 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CJO93_RS06770 PF00384 Molybdopterin oxidoreductase CJO93_RS06770 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal CJO93_RS06770 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CJO93_RS06775 PF00146 NADH dehydrogenase CJO93_RS06780 PF12838 4Fe-4S dicluster domain CJO93_RS06785 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CJO93_RS06790 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CJO93_RS06795 PF00361 Proton-conducting membrane transporter CJO93_RS06795 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CJO93_RS06800 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus CJO93_RS06800 PF00361 Proton-conducting membrane transporter CJO93_RS06805 PF00361 Proton-conducting membrane transporter CJO93_RS06840 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJO93_RS06840 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJO93_RS06840 PF02770 Acyl-CoA dehydrogenase, middle domain CJO93_RS06845 PF00171 Aldehyde dehydrogenase family CJO93_RS06845 PF01575 MaoC like domain CJO93_RS06850 PF01575 MaoC like domain CJO93_RS06860 PF02653 Branched-chain amino acid transport system / permease component CJO93_RS06865 PF02653 Branched-chain amino acid transport system / permease component CJO93_RS06870 PF00005 ABC transporter CJO93_RS06870 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJO93_RS06875 PF00005 ABC transporter CJO93_RS06880 PF01774 UreD urease accessory protein CJO93_RS06885 PF00547 Urease, gamma subunit CJO93_RS06890 PF04955 HupE / UreJ protein CJO93_RS06895 PF00699 Urease beta subunit CJO93_RS06900 PF00449 Urease alpha-subunit, N-terminal domain CJO93_RS06900 PF01979 Amidohydrolase family CJO93_RS06905 PF02814 UreE urease accessory protein, N-terminal domain CJO93_RS06905 PF05194 UreE urease accessory protein, C-terminal domain CJO93_RS06910 PF01730 UreF CJO93_RS06915 PF02492 CobW/HypB/UreG, nucleotide-binding domain CJO93_RS06920 PF13737 Transposase DDE domain CJO93_RS06930 PF01810 LysE type translocator CJO93_RS06945 PF00043 Glutathione S-transferase, C-terminal domain CJO93_RS06945 PF02798 Glutathione S-transferase, N-terminal domain CJO93_RS06950 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJO93_RS06950 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJO93_RS06950 PF02770 Acyl-CoA dehydrogenase, middle domain CJO93_RS06960 PF03466 LysR substrate binding domain CJO93_RS06960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS06980 PF00378 Enoyl-CoA hydratase/isomerase CJO93_RS06985 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain CJO93_RS06985 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CJO93_RS06985 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CJO93_RS06990 PF13417 Glutathione S-transferase, N-terminal domain CJO93_RS06990 PF14497 Glutathione S-transferase, C-terminal domain CJO93_RS06995 PF00155 Aminotransferase class I and II CJO93_RS07005 PF03883 Peroxide stress protein YaaA CJO93_RS07010 PF00246 Zinc carboxypeptidase CJO93_RS07010 PF18027 Cytosolic carboxypeptidase N-terminal domain CJO93_RS07020 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJO93_RS07035 PF00694 Aconitase C-terminal domain CJO93_RS07035 PF00330 Aconitase family (aconitate hydratase) CJO93_RS07040 PF03972 MmgE/PrpD family CJO93_RS07060 PF00056 lactate/malate dehydrogenase, NAD binding domain CJO93_RS07060 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CJO93_RS07065 PF00155 Aminotransferase class I and II CJO93_RS07065 PF00392 Bacterial regulatory proteins, gntR family CJO93_RS07075 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CJO93_RS07080 PF00890 FAD binding domain CJO93_RS07080 PF02910 Fumarate reductase flavoprotein C-term CJO93_RS07085 PF13085 2Fe-2S iron-sulfur cluster binding domain CJO93_RS07090 PF03937 Flavinator of succinate dehydrogenase CJO93_RS07095 PF00285 Citrate synthase, C-terminal domain CJO93_RS07100 PF00330 Aconitase family (aconitate hydratase) CJO93_RS07105 PF00694 Aconitase C-terminal domain CJO93_RS07110 PF00180 Isocitrate/isopropylmalate dehydrogenase CJO93_RS07115 PF02774 Semialdehyde dehydrogenase, dimerisation domain CJO93_RS07115 PF01118 Semialdehyde dehydrogenase, NAD binding domain CJO93_RS07125 PF01416 tRNA pseudouridine synthase CJO93_RS07130 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CJO93_RS07135 PF00291 Pyridoxal-phosphate dependent enzyme CJO93_RS07140 PF01555 DNA methylase CJO93_RS07145 PF00290 Tryptophan synthase alpha chain CJO93_RS07150 PF01039 Carboxyl transferase domain CJO93_RS07150 PF17848 Acetyl-coA carboxylase zinc finger domain CJO93_RS07155 PF02875 Mur ligase family, glutamate ligase domain CJO93_RS07155 PF08245 Mur ligase middle domain CJO93_RS07170 PF00156 Phosphoribosyl transferase domain CJO93_RS07175 PF01061 ABC-2 type transporter CJO93_RS07180 PF00005 ABC transporter CJO93_RS07210 PF03928 Haem-degrading CJO93_RS07220 PF02472 Biopolymer transport protein ExbD/TolR CJO93_RS07225 PF01618 MotA/TolQ/ExbB proton channel family CJO93_RS07235 PF00004 ATPase family associated with various cellular activities (AAA) CJO93_RS07235 PF17862 AAA+ lid domain CJO93_RS07235 PF01434 Peptidase family M41 CJO93_RS07255 PF00375 Sodium:dicarboxylate symporter family CJO93_RS07260 PF01177 Asp/Glu/Hydantoin racemase CJO93_RS07270 PF03350 Uncharacterized protein family, UPF0114 CJO93_RS07275 PF00892 EamA-like transporter family CJO93_RS07280 PF16177 Acetyl-coenzyme A synthetase N-terminus CJO93_RS07280 PF00501 AMP-binding enzyme CJO93_RS07280 PF13193 AMP-binding enzyme C-terminal domain CJO93_RS07285 PF00474 Sodium:solute symporter family CJO93_RS07300 PF13737 Transposase DDE domain CJO93_RS07305 PF03472 Autoinducer binding domain CJO93_RS07305 PF00196 Bacterial regulatory proteins, luxR family CJO93_RS07310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO93_RS07310 PF00672 HAMP domain CJO93_RS07310 PF02203 Tar ligand binding domain homologue CJO93_RS07315 PF00990 Diguanylate cyclase, GGDEF domain CJO93_RS07315 PF00072 Response regulator receiver domain CJO93_RS07330 PF01799 [2Fe-2S] binding domain CJO93_RS07330 PF00111 2Fe-2S iron-sulfur cluster binding domain CJO93_RS07335 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CJO93_RS07350 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJO93_RS07355 PF00005 ABC transporter CJO93_RS07355 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJO93_RS07360 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJO93_RS07360 PF00005 ABC transporter CJO93_RS07365 PF12911 N-terminal TM domain of oligopeptide transport permease C CJO93_RS07365 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS07370 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS07375 PF13454 FAD-NAD(P)-binding CJO93_RS07380 PF03466 LysR substrate binding domain CJO93_RS07380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS07415 PF00551 Formyl transferase CJO93_RS07420 PF00929 Exonuclease CJO93_RS07435 PF13356 Arm DNA-binding domain CJO93_RS07435 PF00589 Phage integrase family CJO93_RS07465 PF00248 Aldo/keto reductase family CJO93_RS07470 PF00264 Common central domain of tyrosinase CJO93_RS07485 PF00582 Universal stress protein family CJO93_RS07490 PF08240 Alcohol dehydrogenase GroES-like domain CJO93_RS07520 PF00075 RNase H CJO93_RS07525 PF08241 Methyltransferase domain CJO93_RS07530 PF00753 Metallo-beta-lactamase superfamily CJO93_RS07530 PF16123 Hydroxyacylglutathione hydrolase C-terminus CJO93_RS07535 PF01464 Transglycosylase SLT domain CJO93_RS07535 PF01476 LysM domain CJO93_RS07540 PF13193 AMP-binding enzyme C-terminal domain CJO93_RS07540 PF00501 AMP-binding enzyme CJO93_RS07540 PF16177 Acetyl-coenzyme A synthetase N-terminus CJO93_RS07545 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CJO93_RS07545 PF00117 Glutamine amidotransferase class-I CJO93_RS07550 PF01810 LysE type translocator CJO93_RS07555 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CJO93_RS07555 PF02142 MGS-like domain CJO93_RS07555 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CJO93_RS07560 PF03449 Transcription elongation factor, N-terminal CJO93_RS07560 PF01272 Transcription elongation factor, GreA/GreB, C-term CJO93_RS07570 PF01985 CRS1 / YhbY (CRM) domain CJO93_RS07575 PF01728 FtsJ-like methyltransferase CJO93_RS07580 PF00004 ATPase family associated with various cellular activities (AAA) CJO93_RS07580 PF17862 AAA+ lid domain CJO93_RS07580 PF01434 Peptidase family M41 CJO93_RS07580 PF06480 FtsH Extracellular CJO93_RS07585 PF00809 Pterin binding enzyme CJO93_RS07590 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CJO93_RS07590 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CJO93_RS07590 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CJO93_RS07590 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CJO93_RS07595 PF12849 PBP superfamily domain CJO93_RS07600 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS07605 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS07610 PF00005 ABC transporter CJO93_RS07615 PF01895 PhoU domain CJO93_RS07620 PF00072 Response regulator receiver domain CJO93_RS07620 PF00486 Transcriptional regulatory protein, C terminal CJO93_RS07625 PF00989 PAS fold CJO93_RS07625 PF00512 His Kinase A (phospho-acceptor) domain CJO93_RS07625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS07625 PF11808 Phosphate regulon sensor protein PhoR CJO93_RS07630 PF13090 Polyphosphate kinase C-terminal domain 2 CJO93_RS07630 PF17941 Polyphosphate kinase C-terminal domain 1 CJO93_RS07630 PF13089 Polyphosphate kinase N-terminal domain CJO93_RS07630 PF02503 Polyphosphate kinase middle domain CJO93_RS07635 PF02541 Ppx/GppA phosphatase family CJO93_RS07660 PF01925 Sulfite exporter TauE/SafE CJO93_RS07675 PF00753 Metallo-beta-lactamase superfamily CJO93_RS07705 PF00589 Phage integrase family CJO93_RS07745 PF02913 FAD linked oxidases, C-terminal domain CJO93_RS07745 PF01565 FAD binding domain CJO93_RS07755 PF03358 NADPH-dependent FMN reductase CJO93_RS07760 PF03631 Virulence factor BrkB CJO93_RS07775 PF01053 Cys/Met metabolism PLP-dependent enzyme CJO93_RS07785 PF07690 Major Facilitator Superfamily CJO93_RS07790 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CJO93_RS07790 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CJO93_RS07795 PF01264 Chorismate synthase CJO93_RS07810 PF00196 Bacterial regulatory proteins, luxR family CJO93_RS07810 PF00072 Response regulator receiver domain CJO93_RS07815 PF01144 Coenzyme A transferase CJO93_RS07820 PF01144 Coenzyme A transferase CJO93_RS07825 PF00106 short chain dehydrogenase CJO93_RS07835 PF01042 Endoribonuclease L-PSP CJO93_RS07840 PF02824 TGS domain CJO93_RS07840 PF13291 ACT domain CJO93_RS07840 PF04607 Region found in RelA / SpoT proteins CJO93_RS07850 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CJO93_RS07850 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CJO93_RS07850 PF02824 TGS domain CJO93_RS07850 PF03129 Anticodon binding domain CJO93_RS07855 PF05198 Translation initiation factor IF-3, N-terminal domain CJO93_RS07855 PF00707 Translation initiation factor IF-3, C-terminal domain CJO93_RS07860 PF01632 Ribosomal protein L35 CJO93_RS07865 PF00453 Ribosomal protein L20 CJO93_RS07870 PF01409 tRNA synthetases class II core domain (F) CJO93_RS07870 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CJO93_RS07875 PF03147 Ferredoxin-fold anticodon binding domain CJO93_RS07875 PF03483 B3/4 domain CJO93_RS07875 PF03484 tRNA synthetase B5 domain CJO93_RS07875 PF01588 Putative tRNA binding domain CJO93_RS07875 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CJO93_RS07880 PF00216 Bacterial DNA-binding protein CJO93_RS07910 PF00817 impB/mucB/samB family CJO93_RS07910 PF11799 impB/mucB/samB family C-terminal domain CJO93_RS07915 PF13520 Amino acid permease CJO93_RS07930 PF03328 HpcH/HpaI aldolase/citrate lyase family CJO93_RS07935 PF01047 MarR family CJO93_RS07945 PF07969 Amidohydrolase family CJO93_RS07950 PF01432 Peptidase family M3 CJO93_RS07955 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CJO93_RS07955 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CJO93_RS07960 PF00196 Bacterial regulatory proteins, luxR family CJO93_RS07960 PF00072 Response regulator receiver domain CJO93_RS07965 PF00989 PAS fold CJO93_RS07965 PF00512 His Kinase A (phospho-acceptor) domain CJO93_RS07965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS07975 PF17831 Pyruvate dehydrogenase E1 component middle domain CJO93_RS07975 PF00456 Transketolase, thiamine diphosphate binding domain CJO93_RS07980 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CJO93_RS07980 PF00364 Biotin-requiring enzyme CJO93_RS07980 PF02817 e3 binding domain CJO93_RS07990 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CJO93_RS07990 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO93_RS08000 PF09361 Phasin protein CJO93_RS08005 PF00850 Histone deacetylase domain CJO93_RS08020 PF00881 Nitroreductase family CJO93_RS08025 PF00768 D-alanyl-D-alanine carboxypeptidase CJO93_RS08030 PF01614 Bacterial transcriptional regulator CJO93_RS08030 PF09339 IclR helix-turn-helix domain CJO93_RS08035 PF02754 Cysteine-rich domain CJO93_RS08040 PF13183 4Fe-4S dicluster domain CJO93_RS08040 PF02589 LUD domain CJO93_RS08040 PF11870 Domain of unknown function (DUF3390) CJO93_RS08055 PF04376 Arginine-tRNA-protein transferase, N terminus CJO93_RS08055 PF04377 Arginine-tRNA-protein transferase, C terminus CJO93_RS08060 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CJO93_RS08080 PF01180 Dihydroorotate dehydrogenase CJO93_RS08090 PF02705 K+ potassium transporter CJO93_RS08100 PF16921 Tex protein YqgF-like domain CJO93_RS08100 PF09371 Tex-like protein N-terminal domain CJO93_RS08100 PF00575 S1 RNA binding domain CJO93_RS08100 PF17674 HHH domain CJO93_RS08115 PF13307 Helicase C-terminal domain CJO93_RS08115 PF04851 Type III restriction enzyme, res subunit CJO93_RS08120 PF13525 Outer membrane lipoprotein CJO93_RS08125 PF01479 S4 domain CJO93_RS08125 PF00849 RNA pseudouridylate synthase CJO93_RS08130 PF02578 Multi-copper polyphenol oxidoreductase laccase CJO93_RS08140 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus CJO93_RS08145 PF00108 Thiolase, N-terminal domain CJO93_RS08145 PF02803 Thiolase, C-terminal domain CJO93_RS08150 PF00106 short chain dehydrogenase CJO93_RS08155 PF07879 PHB/PHA accumulation regulator DNA-binding domain CJO93_RS08155 PF05233 PHB accumulation regulatory domain CJO93_RS08160 PF01207 Dihydrouridine synthase (Dus) CJO93_RS08165 PF00919 Uncharacterized protein family UPF0004 CJO93_RS08165 PF18693 TRAM domain CJO93_RS08165 PF04055 Radical SAM superfamily CJO93_RS08170 PF00108 Thiolase, N-terminal domain CJO93_RS08170 PF02803 Thiolase, C-terminal domain CJO93_RS08180 PF01053 Cys/Met metabolism PLP-dependent enzyme CJO93_RS08190 PF07687 Peptidase dimerisation domain CJO93_RS08190 PF01546 Peptidase family M20/M25/M40 CJO93_RS08195 PF17757 UvrB interaction domain CJO93_RS08195 PF00271 Helicase conserved C-terminal domain CJO93_RS08195 PF00270 DEAD/DEAH box helicase CJO93_RS08195 PF03461 TRCF domain CJO93_RS08195 PF02559 CarD-like/TRCF domain CJO93_RS08200 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CJO93_RS08205 PF02542 YgbB family CJO93_RS08210 PF02627 Carboxymuconolactone decarboxylase family CJO93_RS08215 PF00578 AhpC/TSA family CJO93_RS08220 PF00512 His Kinase A (phospho-acceptor) domain CJO93_RS08220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS08220 PF00672 HAMP domain CJO93_RS08225 PF00072 Response regulator receiver domain CJO93_RS08225 PF00486 Transcriptional regulatory protein, C terminal CJO93_RS08250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJO93_RS08255 PF00873 AcrB/AcrD/AcrF family CJO93_RS08265 PF00589 Phage integrase family CJO93_RS08265 PF12167 Arm DNA-binding domain CJO93_RS08330 PF01381 Helix-turn-helix CJO93_RS08390 PF02413 Caudovirales tail fibre assembly protein, lambda gpK CJO93_RS08440 PF04984 Phage tail sheath protein subtilisin-like domain CJO93_RS08440 PF17482 Phage tail sheath C-terminal domain CJO93_RS08445 PF10618 Phage tail tube protein CJO93_RS08470 PF07157 DNA circularisation protein N-terminus CJO93_RS08485 PF07409 Phage protein GP46 CJO93_RS08540 PF01476 LysM domain CJO93_RS08550 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CJO93_RS08550 PF01266 FAD dependent oxidoreductase CJO93_RS08555 PF05698 Bacterial trigger factor protein (TF) C-terminus CJO93_RS08555 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CJO93_RS08555 PF05697 Bacterial trigger factor protein (TF) CJO93_RS08560 PF00574 Clp protease CJO93_RS08565 PF10431 C-terminal, D2-small domain, of ClpB protein CJO93_RS08565 PF06689 ClpX C4-type zinc finger CJO93_RS08565 PF07724 AAA domain (Cdc48 subfamily) CJO93_RS08570 PF02190 ATP-dependent protease La (LON) substrate-binding domain CJO93_RS08570 PF00004 ATPase family associated with various cellular activities (AAA) CJO93_RS08570 PF05362 Lon protease (S16) C-terminal proteolytic domain CJO93_RS08575 PF00216 Bacterial DNA-binding protein CJO93_RS08595 PF13006 Insertion element 4 transposase N-terminal CJO93_RS08595 PF01609 Transposase DDE domain CJO93_RS08600 PF10502 Signal peptidase, peptidase S26 CJO93_RS08605 PF13472 GDSL-like Lipase/Acylhydrolase family CJO93_RS08610 PF00005 ABC transporter CJO93_RS08615 PF00342 Phosphoglucose isomerase CJO93_RS08620 PF01256 Carbohydrate kinase CJO93_RS08630 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CJO93_RS08630 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CJO93_RS08630 PF02769 AIR synthase related protein, C-terminal domain CJO93_RS08650 PF13186 Iron-sulfur cluster-binding domain CJO93_RS08650 PF04055 Radical SAM superfamily CJO93_RS08670 PF03466 LysR substrate binding domain CJO93_RS08670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS08680 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS08685 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS08695 PF08402 TOBE domain CJO93_RS08695 PF00005 ABC transporter CJO93_RS08700 PF08521 Two-component sensor kinase N-terminal CJO93_RS08700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS08700 PF00512 His Kinase A (phospho-acceptor) domain CJO93_RS08705 PF00486 Transcriptional regulatory protein, C terminal CJO93_RS08705 PF00072 Response regulator receiver domain CJO93_RS08710 PF13609 Gram-negative porin CJO93_RS08715 PF00005 ABC transporter CJO93_RS08750 PF01722 BolA-like protein CJO93_RS08755 PF04279 Intracellular septation protein A CJO93_RS08760 PF01641 SelR domain CJO93_RS08765 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CJO93_RS08770 PF13193 AMP-binding enzyme C-terminal domain CJO93_RS08770 PF00501 AMP-binding enzyme CJO93_RS08775 PF13458 Periplasmic binding protein CJO93_RS08780 PF02653 Branched-chain amino acid transport system / permease component CJO93_RS08790 PF00005 ABC transporter CJO93_RS08790 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJO93_RS08795 PF00005 ABC transporter CJO93_RS08805 PF00295 Glycosyl hydrolases family 28 CJO93_RS08810 PF00324 Amino acid permease CJO93_RS08815 PF00324 Amino acid permease CJO93_RS08820 PF00378 Enoyl-CoA hydratase/isomerase CJO93_RS08820 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CJO93_RS08820 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CJO93_RS08825 PF00857 Isochorismatase family CJO93_RS08830 PF00108 Thiolase, N-terminal domain CJO93_RS08830 PF02803 Thiolase, C-terminal domain CJO93_RS08835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJO93_RS08835 PF12806 Acetyl-CoA dehydrogenase C-terminal like CJO93_RS08835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJO93_RS08835 PF02770 Acyl-CoA dehydrogenase, middle domain CJO93_RS08850 PF00144 Beta-lactamase CJO93_RS08855 PF16884 N-terminal domain of oxidoreductase CJO93_RS08855 PF00107 Zinc-binding dehydrogenase CJO93_RS08860 PF00596 Class II Aldolase and Adducin N-terminal domain CJO93_RS08870 PF00106 short chain dehydrogenase CJO93_RS08875 PF00561 alpha/beta hydrolase fold CJO93_RS08880 PF00465 Iron-containing alcohol dehydrogenase CJO93_RS08885 PF07859 alpha/beta hydrolase fold CJO93_RS08910 PF01526 Tn3 transposase DDE domain CJO93_RS08910 PF13700 Domain of unknown function (DUF4158) CJO93_RS08930 PF02899 Phage integrase, N-terminal SAM-like domain CJO93_RS08930 PF00589 Phage integrase family CJO93_RS08945 PF01526 Tn3 transposase DDE domain CJO93_RS08945 PF13700 Domain of unknown function (DUF4158) CJO93_RS08970 PF13737 Transposase DDE domain CJO93_RS08980 PF00072 Response regulator receiver domain CJO93_RS08980 PF00486 Transcriptional regulatory protein, C terminal CJO93_RS09020 PF00529 HlyD membrane-fusion protein of T1SS CJO93_RS09020 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJO93_RS09025 PF00873 AcrB/AcrD/AcrF family CJO93_RS09040 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJO93_RS09045 PF00005 ABC transporter CJO93_RS09050 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS09055 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS09060 PF00106 short chain dehydrogenase CJO93_RS09065 PF03746 LamB/YcsF family CJO93_RS09075 PF02626 Carboxyltransferase domain, subdomain A and B CJO93_RS09080 PF02682 Carboxyltransferase domain, subdomain C and D CJO93_RS09090 PF00364 Biotin-requiring enzyme CJO93_RS09095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS09095 PF03466 LysR substrate binding domain CJO93_RS09100 PF00155 Aminotransferase class I and II CJO93_RS09105 PF03737 Aldolase/RraA CJO93_RS09110 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CJO93_RS09110 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CJO93_RS09125 PF00107 Zinc-binding dehydrogenase CJO93_RS09125 PF08240 Alcohol dehydrogenase GroES-like domain CJO93_RS09130 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CJO93_RS09130 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CJO93_RS09135 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CJO93_RS09140 PF02233 NAD(P) transhydrogenase beta subunit CJO93_RS09145 PF13609 Gram-negative porin CJO93_RS09180 PF00958 GMP synthase C terminal domain CJO93_RS09180 PF00117 Glutamine amidotransferase class-I CJO93_RS09180 PF02540 NAD synthase CJO93_RS09190 PF00571 CBS domain CJO93_RS09190 PF00478 IMP dehydrogenase / GMP reductase domain CJO93_RS09195 PF00892 EamA-like transporter family CJO93_RS09205 PF03658 RnfH family Ubiquitin CJO93_RS09210 PF03364 Polyketide cyclase / dehydrase and lipid transport CJO93_RS09215 PF01668 SmpB protein CJO93_RS09220 PF01145 SPFH domain / Band 7 family CJO93_RS09220 PF16200 C-terminal region of band_7 CJO93_RS09230 PF00391 PEP-utilising enzyme, mobile domain CJO93_RS09230 PF02896 PEP-utilising enzyme, TIM barrel domain CJO93_RS09230 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CJO93_RS09235 PF03618 Kinase/pyrophosphorylase CJO93_RS09240 PF00588 SpoU rRNA Methylase family CJO93_RS09240 PF08032 RNA 2'-O ribose methyltransferase substrate binding CJO93_RS09245 PF01351 Ribonuclease HII CJO93_RS09250 PF02684 Lipid-A-disaccharide synthetase CJO93_RS09255 PF00132 Bacterial transferase hexapeptide (six repeats) CJO93_RS09255 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CJO93_RS09260 PF07977 FabA-like domain CJO93_RS09265 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CJO93_RS09265 PF00132 Bacterial transferase hexapeptide (six repeats) CJO93_RS09270 PF03938 Outer membrane protein (OmpH-like) CJO93_RS09275 PF07244 Surface antigen variable number repeat CJO93_RS09275 PF01103 Surface antigen CJO93_RS09285 PF13288 DXP reductoisomerase C-terminal domain CJO93_RS09285 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CJO93_RS09285 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CJO93_RS09295 PF01255 Putative undecaprenyl diphosphate synthase CJO93_RS09300 PF01765 Ribosome recycling factor CJO93_RS09305 PF00696 Amino acid kinase family CJO93_RS09310 PF00889 Elongation factor TS CJO93_RS09315 PF00318 Ribosomal protein S2 CJO93_RS09320 PF00557 Metallopeptidase family M24 CJO93_RS09325 PF01966 HD domain CJO93_RS09325 PF08335 GlnD PII-uridylyltransferase CJO93_RS09325 PF01909 Nucleotidyltransferase domain CJO93_RS09330 PF01479 S4 domain CJO93_RS09330 PF00849 RNA pseudouridylate synthase CJO93_RS09340 PF01327 Polypeptide deformylase CJO93_RS09345 PF01653 NAD-dependent DNA ligase adenylation domain CJO93_RS09345 PF03120 NAD-dependent DNA ligase OB-fold domain CJO93_RS09345 PF00533 BRCA1 C Terminus (BRCT) domain CJO93_RS09345 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CJO93_RS09345 PF12826 Helix-hairpin-helix motif CJO93_RS09355 PF06470 SMC proteins Flexible Hinge Domain CJO93_RS09355 PF02463 RecF/RecN/SMC N terminal domain CJO93_RS09360 PF00561 alpha/beta hydrolase fold CJO93_RS09370 PF00155 Aminotransferase class I and II CJO93_RS09375 PF00132 Bacterial transferase hexapeptide (six repeats) CJO93_RS09375 PF14602 Hexapeptide repeat of succinyl-transferase CJO93_RS09375 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CJO93_RS09385 PF03960 ArsC family CJO93_RS09390 PF01546 Peptidase family M20/M25/M40 CJO93_RS09390 PF07687 Peptidase dimerisation domain CJO93_RS09400 PF05175 Methyltransferase small domain CJO93_RS09405 PF01227 GTP cyclohydrolase I CJO93_RS09425 PF03576 Peptidase family S58 CJO93_RS09430 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS09430 PF12911 N-terminal TM domain of oligopeptide transport permease C CJO93_RS09435 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS09440 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJO93_RS09445 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJO93_RS09445 PF00005 ABC transporter CJO93_RS09450 PF01112 Asparaginase CJO93_RS09460 PF12848 ABC transporter CJO93_RS09460 PF00005 ABC transporter CJO93_RS09465 PF02515 CoA-transferase family III CJO93_RS09470 PF04463 Protein of unknown function (DUF523) CJO93_RS09475 PF02600 Disulfide bond formation protein DsbB CJO93_RS09480 PF18073 Rubredoxin metal binding domain CJO93_RS09485 PF00842 Alanine racemase, C-terminal domain CJO93_RS09485 PF01168 Alanine racemase, N-terminal domain CJO93_RS09490 PF07690 Major Facilitator Superfamily CJO93_RS09495 PF03167 Uracil DNA glycosylase superfamily CJO93_RS09500 PF00583 Acetyltransferase (GNAT) family CJO93_RS09505 PF00814 Glycoprotease family CJO93_RS09515 PF07690 Major Facilitator Superfamily CJO93_RS09525 PF01274 Malate synthase CJO93_RS09540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS09540 PF03466 LysR substrate binding domain CJO93_RS09550 PF00463 Isocitrate lyase family CJO93_RS09570 PF03737 Aldolase/RraA CJO93_RS09580 PF00072 Response regulator receiver domain CJO93_RS09580 PF04397 LytTr DNA-binding domain CJO93_RS09585 PF07694 5TMR of 5TMR-LYT CJO93_RS09585 PF06580 Histidine kinase CJO93_RS09600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS09600 PF03466 LysR substrate binding domain CJO93_RS09605 PF12857 TOBE-like domain CJO93_RS09605 PF00005 ABC transporter CJO93_RS09605 PF17850 CysA C-terminal regulatory domain CJO93_RS09610 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS09615 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS09630 PF03459 TOBE domain CJO93_RS09630 PF00005 ABC transporter CJO93_RS09635 PF00005 ABC transporter CJO93_RS09640 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS09645 PF00296 Luciferase-like monooxygenase CJO93_RS09650 PF09084 NMT1/THI5 like CJO93_RS09655 PF03358 NADPH-dependent FMN reductase CJO93_RS09665 PF06826 Predicted Permease Membrane Region CJO93_RS09670 PF00390 Malic enzyme, N-terminal domain CJO93_RS09670 PF03949 Malic enzyme, NAD binding domain CJO93_RS09675 PF01070 FMN-dependent dehydrogenase CJO93_RS09680 PF00158 Sigma-54 interaction domain CJO93_RS09680 PF02954 Bacterial regulatory protein, Fis family CJO93_RS09680 PF00072 Response regulator receiver domain CJO93_RS09685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS09685 PF00512 His Kinase A (phospho-acceptor) domain CJO93_RS09695 PF00890 FAD binding domain CJO93_RS09695 PF02910 Fumarate reductase flavoprotein C-term CJO93_RS09700 PF10531 SLBB domain CJO93_RS09700 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CJO93_RS09700 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CJO93_RS09705 PF17871 AAA lid domain CJO93_RS09705 PF02861 Clp amino terminal domain, pathogenicity island component CJO93_RS09705 PF07724 AAA domain (Cdc48 subfamily) CJO93_RS09705 PF00004 ATPase family associated with various cellular activities (AAA) CJO93_RS09705 PF10431 C-terminal, D2-small domain, of ClpB protein CJO93_RS09710 PF10605 3HB-oligomer hydrolase (3HBOH) CJO93_RS09715 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CJO93_RS09720 PF02391 MoaE protein CJO93_RS09725 PF02597 ThiS family CJO93_RS09730 PF03453 MoeA N-terminal region (domain I and II) CJO93_RS09730 PF03454 MoeA C-terminal region (domain IV) CJO93_RS09730 PF00994 Probable molybdopterin binding domain CJO93_RS09735 PF03167 Uracil DNA glycosylase superfamily CJO93_RS09740 PF00291 Pyridoxal-phosphate dependent enzyme CJO93_RS09740 PF14821 Threonine synthase N terminus CJO93_RS09745 PF01842 ACT domain CJO93_RS09745 PF03447 Homoserine dehydrogenase, NAD binding domain CJO93_RS09745 PF00742 Homoserine dehydrogenase CJO93_RS09750 PF00155 Aminotransferase class I and II CJO93_RS09760 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CJO93_RS09770 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CJO93_RS09775 PF00535 Glycosyl transferase family 2 CJO93_RS09785 PF01370 NAD dependent epimerase/dehydratase family CJO93_RS09785 PF02911 Formyl transferase, C-terminal domain CJO93_RS09785 PF00551 Formyl transferase CJO93_RS09790 PF01522 Polysaccharide deacetylase CJO93_RS09800 PF02562 PhoH-like protein CJO93_RS09800 PF13638 PIN domain CJO93_RS09810 PF00877 NlpC/P60 family CJO93_RS09815 PF01384 Phosphate transporter family CJO93_RS09825 PF03796 DnaB-like helicase C terminal domain CJO93_RS09825 PF00772 DnaB-like helicase N terminal domain CJO93_RS09830 PF01281 Ribosomal protein L9, N-terminal domain CJO93_RS09830 PF03948 Ribosomal protein L9, C-terminal domain CJO93_RS09835 PF01084 Ribosomal protein S18 CJO93_RS09845 PF01250 Ribosomal protein S6 CJO93_RS09850 PF17763 Glutaminase/Asparaginase C-terminal domain CJO93_RS09850 PF00710 Asparaginase, N-terminal CJO93_RS09855 PF00970 Oxidoreductase FAD-binding domain CJO93_RS09855 PF00175 Oxidoreductase NAD-binding domain CJO93_RS09860 PF01726 LexA DNA binding domain CJO93_RS09860 PF00717 Peptidase S24-like CJO93_RS09875 PF01546 Peptidase family M20/M25/M40 CJO93_RS09875 PF07687 Peptidase dimerisation domain CJO93_RS09895 PF01207 Dihydrouridine synthase (Dus) CJO93_RS09900 PF00378 Enoyl-CoA hydratase/isomerase CJO93_RS09910 PF00009 Elongation factor Tu GTP binding domain CJO93_RS09910 PF00679 Elongation factor G C-terminus CJO93_RS09910 PF03144 Elongation factor Tu domain 2 CJO93_RS09915 PF01047 MarR family CJO93_RS09920 PF02321 Outer membrane efflux protein CJO93_RS09925 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJO93_RS09925 PF00529 HlyD membrane-fusion protein of T1SS CJO93_RS09930 PF07690 Major Facilitator Superfamily CJO93_RS09935 PF09157 Pseudouridine synthase II TruB, C-terminal CJO93_RS09935 PF16198 tRNA pseudouridylate synthase B C-terminal domain CJO93_RS09935 PF01509 TruB family pseudouridylate synthase (N terminal domain) CJO93_RS09940 PF02033 Ribosome-binding factor A CJO93_RS09945 PF08364 Bacterial translation initiation factor IF-2 associated region CJO93_RS09945 PF04760 Translation initiation factor IF-2, N-terminal region CJO93_RS09945 PF11987 Translation-initiation factor 2 CJO93_RS09945 PF00009 Elongation factor Tu GTP binding domain CJO93_RS09950 PF13184 NusA-like KH domain CJO93_RS09950 PF08529 NusA N-terminal domain CJO93_RS09955 PF02576 RimP N-terminal domain CJO93_RS09955 PF17384 RimP C-terminal SH3 domain CJO93_RS09960 PF01479 S4 domain CJO93_RS09960 PF00849 RNA pseudouridylate synthase CJO93_RS09965 PF04079 Segregation and condensation complex subunit ScpB CJO93_RS09975 PF13545 Crp-like helix-turn-helix domain CJO93_RS09975 PF00027 Cyclic nucleotide-binding domain CJO93_RS09990 PF12801 4Fe-4S binding domain CJO93_RS09990 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CJO93_RS09990 PF13746 4Fe-4S dicluster domain CJO93_RS09995 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CJO93_RS09995 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CJO93_RS10010 PF00115 Cytochrome C and Quinol oxidase polypeptide I CJO93_RS10020 PF00403 Heavy-metal-associated domain CJO93_RS10030 PF03969 AFG1-like ATPase CJO93_RS10035 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CJO93_RS10035 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO93_RS10040 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CJO93_RS10040 PF00364 Biotin-requiring enzyme CJO93_RS10040 PF02817 e3 binding domain CJO93_RS10045 PF02779 Transketolase, pyrimidine binding domain CJO93_RS10045 PF16870 2-oxoglutarate dehydrogenase C-terminal CJO93_RS10045 PF16078 2-oxoglutarate dehydrogenase N-terminus CJO93_RS10045 PF00676 Dehydrogenase E1 component CJO93_RS10050 PF03009 Glycerophosphoryl diester phosphodiesterase family CJO93_RS10055 PF17912 MalK OB fold domain CJO93_RS10055 PF00005 ABC transporter CJO93_RS10060 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS10065 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS10070 PF13416 Bacterial extracellular solute-binding protein CJO93_RS10085 PF00158 Sigma-54 interaction domain CJO93_RS10085 PF02954 Bacterial regulatory protein, Fis family CJO93_RS10085 PF00072 Response regulator receiver domain CJO93_RS10090 PF00989 PAS fold CJO93_RS10090 PF00512 His Kinase A (phospho-acceptor) domain CJO93_RS10090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS10100 PF03951 Glutamine synthetase, beta-Grasp domain CJO93_RS10100 PF00120 Glutamine synthetase, catalytic domain CJO93_RS10110 PF02464 Competence-damaged protein CJO93_RS10110 PF18146 Damage-inducible protein CinA KH domain CJO93_RS10110 PF00994 Probable molybdopterin binding domain CJO93_RS10135 PF04408 Helicase associated domain (HA2) CJO93_RS10135 PF11898 Domain of unknown function (DUF3418) CJO93_RS10135 PF00271 Helicase conserved C-terminal domain CJO93_RS10135 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CJO93_RS10135 PF00270 DEAD/DEAH box helicase CJO93_RS10140 PF00696 Amino acid kinase family CJO93_RS10140 PF00583 Acetyltransferase (GNAT) family CJO93_RS10145 PF01418 Helix-turn-helix domain, rpiR family CJO93_RS10145 PF01380 SIS domain CJO93_RS10150 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CJO93_RS10150 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CJO93_RS10160 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CJO93_RS10160 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CJO93_RS10170 PF01261 Xylose isomerase-like TIM barrel CJO93_RS10175 PF02653 Branched-chain amino acid transport system / permease component CJO93_RS10180 PF00005 ABC transporter CJO93_RS10185 PF13407 Periplasmic binding protein domain CJO93_RS10190 PF00294 pfkB family carbohydrate kinase CJO93_RS10195 PF00205 Thiamine pyrophosphate enzyme, central domain CJO93_RS10195 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CJO93_RS10195 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CJO93_RS10200 PF01261 Xylose isomerase-like TIM barrel CJO93_RS10205 PF04962 KduI/IolB family CJO93_RS10210 PF00267 Gram-negative porin CJO93_RS10215 PF04362 Bacterial Fe(2+) trafficking CJO93_RS10220 PF00672 HAMP domain CJO93_RS10220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO93_RS10225 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CJO93_RS10230 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CJO93_RS10235 PF00923 Transaldolase/Fructose-6-phosphate aldolase CJO93_RS10245 PF00588 SpoU rRNA Methylase family CJO93_RS10245 PF08032 RNA 2'-O ribose methyltransferase substrate binding CJO93_RS10250 PF17876 Cold shock domain CJO93_RS10250 PF08461 Ribonuclease R winged-helix domain CJO93_RS10250 PF00773 RNB domain CJO93_RS10250 PF00575 S1 RNA binding domain CJO93_RS10250 PF08206 Ribonuclease B OB domain CJO93_RS10260 PF00156 Phosphoribosyl transferase domain CJO93_RS10265 PF00709 Adenylosuccinate synthetase CJO93_RS10270 PF13393 Histidyl-tRNA synthetase CJO93_RS10280 PF01145 SPFH domain / Band 7 family CJO93_RS10285 PF12221 Bacterial membrane protein N terminal CJO93_RS10285 PF01145 SPFH domain / Band 7 family CJO93_RS10290 PF16360 GTP-binding GTPase Middle Region CJO93_RS10290 PF13167 GTP-binding GTPase N-terminal CJO93_RS10290 PF01926 50S ribosome-binding GTPase CJO93_RS10295 PF17209 Hfq protein CJO93_RS10300 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CJO93_RS10300 PF01926 50S ribosome-binding GTPase CJO93_RS10305 PF13360 PQQ-like domain CJO93_RS10310 PF09976 Tetratricopeptide repeat-like domain CJO93_RS10315 PF13393 Histidyl-tRNA synthetase CJO93_RS10315 PF03129 Anticodon binding domain CJO93_RS10320 PF04551 GcpE protein CJO93_RS10335 PF04055 Radical SAM superfamily CJO93_RS10340 PF00334 Nucleoside diphosphate kinase CJO93_RS10345 PF01027 Inhibitor of apoptosis-promoting Bax1 CJO93_RS10350 PF05958 tRNA (Uracil-5-)-methyltransferase CJO93_RS10350 PF01938 TRAM domain CJO93_RS10360 PF04542 Sigma-70 region 2 CJO93_RS10360 PF00140 Sigma-70 factor, region 1.2 CJO93_RS10360 PF04539 Sigma-70 region 3 CJO93_RS10360 PF04545 Sigma-70, region 4 CJO93_RS10365 PF01551 Peptidase family M23 CJO93_RS10365 PF01476 LysM domain CJO93_RS10375 PF01975 Survival protein SurE CJO93_RS10380 PF00109 Beta-ketoacyl synthase, N-terminal domain CJO93_RS10380 PF08240 Alcohol dehydrogenase GroES-like domain CJO93_RS10380 PF00107 Zinc-binding dehydrogenase CJO93_RS10380 PF16197 Ketoacyl-synthetase C-terminal extension CJO93_RS10380 PF02801 Beta-ketoacyl synthase, C-terminal domain CJO93_RS10380 PF08659 KR domain CJO93_RS10380 PF00550 Phosphopantetheine attachment site CJO93_RS10380 PF14765 Polyketide synthase dehydratase CJO93_RS10380 PF00698 Acyl transferase domain CJO93_RS10385 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CJO93_RS10390 PF16925 Tetracyclin repressor-like, C-terminal domain CJO93_RS10390 PF00440 Bacterial regulatory proteins, tetR family CJO93_RS10395 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS10400 PF00005 ABC transporter CJO93_RS10410 PF02515 CoA-transferase family III CJO93_RS10425 PF13662 Toprim domain CJO93_RS10425 PF02132 RecR protein CJO93_RS10430 PF02575 YbaB/EbfC DNA-binding family CJO93_RS10435 PF12170 DNA polymerase III tau subunit V interacting with alpha CJO93_RS10435 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CJO93_RS10435 PF12169 DNA polymerase III subunits gamma and tau domain III CJO93_RS10445 PF12705 PD-(D/E)XK nuclease superfamily CJO93_RS10445 PF00580 UvrD/REP helicase N-terminal domain CJO93_RS10445 PF13361 UvrD-like helicase C-terminal domain CJO93_RS10455 PF00085 Thioredoxin CJO93_RS10460 PF07497 Rho termination factor, RNA-binding domain CJO93_RS10460 PF07498 Rho termination factor, N-terminal domain CJO93_RS10460 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJO93_RS10465 PF00158 Sigma-54 interaction domain CJO93_RS10465 PF02954 Bacterial regulatory protein, Fis family CJO93_RS10465 PF00072 Response regulator receiver domain CJO93_RS10470 PF00072 Response regulator receiver domain CJO93_RS10470 PF00196 Bacterial regulatory proteins, luxR family CJO93_RS10475 PF06167 Glucose-regulated metallo-peptidase M90 CJO93_RS10485 PF01197 Ribosomal protein L31 CJO93_RS10495 PF01554 MatE CJO93_RS10530 PF00749 tRNA synthetases class I (E and Q), catalytic domain CJO93_RS10535 PF01734 Patatin-like phospholipase CJO93_RS10540 PF00877 NlpC/P60 family CJO93_RS10545 PF00005 ABC transporter CJO93_RS10545 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJO93_RS10550 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS10550 PF12911 N-terminal TM domain of oligopeptide transport permease C CJO93_RS10555 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS10560 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJO93_RS10575 PF00696 Amino acid kinase family CJO93_RS10575 PF13840 ACT domain CJO93_RS10575 PF01842 ACT domain CJO93_RS10580 PF01171 PP-loop family CJO93_RS10580 PF11734 TilS substrate C-terminal domain CJO93_RS10580 PF09179 TilS substrate binding domain CJO93_RS10585 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CJO93_RS10590 PF00730 HhH-GPD superfamily base excision DNA repair protein CJO93_RS10595 PF09190 DALR domain CJO93_RS10595 PF01406 tRNA synthetases class I (C) catalytic domain CJO93_RS10605 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CJO93_RS10610 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CJO93_RS10615 PF00149 Calcineurin-like phosphoesterase CJO93_RS10620 PF00132 Bacterial transferase hexapeptide (six repeats) CJO93_RS10625 PF00588 SpoU rRNA Methylase family CJO93_RS10630 PF00459 Inositol monophosphatase family CJO93_RS10635 PF08671 Anti-repressor SinI CJO93_RS10635 PF01381 Helix-turn-helix CJO93_RS10640 PF00117 Glutamine amidotransferase class-I CJO93_RS10645 PF03473 MOSC domain CJO93_RS10645 PF03475 3-alpha domain CJO93_RS10650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO93_RS10650 PF02203 Tar ligand binding domain homologue CJO93_RS10650 PF00672 HAMP domain CJO93_RS10655 PF17200 Single Cache domain 2 CJO93_RS10655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO93_RS10655 PF00672 HAMP domain CJO93_RS10660 PF00248 Aldo/keto reductase family CJO93_RS10665 PF07690 Major Facilitator Superfamily CJO93_RS10670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS10670 PF03466 LysR substrate binding domain CJO93_RS10675 PF00488 MutS domain V CJO93_RS10675 PF05192 MutS domain III CJO93_RS10675 PF05188 MutS domain II CJO93_RS10675 PF01624 MutS domain I CJO93_RS10675 PF05190 MutS family domain IV CJO93_RS10685 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CJO93_RS10690 PF08007 Cupin superfamily protein CJO93_RS10695 PF00753 Metallo-beta-lactamase superfamily CJO93_RS10695 PF12706 Beta-lactamase superfamily domain CJO93_RS10700 PF06804 NlpB/DapX lipoprotein CJO93_RS10705 PF00701 Dihydrodipicolinate synthetase family CJO93_RS10715 PF00579 tRNA synthetases class I (W and Y) CJO93_RS10720 PF02163 Peptidase family M50 CJO93_RS10725 PF01300 Telomere recombination CJO93_RS10730 PF02811 PHP domain CJO93_RS10735 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO93_RS10750 PF04134 Protein of unknown function, DUF393 CJO93_RS10755 PF00561 alpha/beta hydrolase fold CJO93_RS10760 PF04305 Protein of unknown function (DUF455) CJO93_RS10765 PF00132 Bacterial transferase hexapeptide (six repeats) CJO93_RS10770 PF01430 Hsp33 protein CJO93_RS10780 PF04977 Septum formation initiator CJO93_RS10785 PF03952 Enolase, N-terminal domain CJO93_RS10785 PF00113 Enolase, C-terminal TIM barrel domain CJO93_RS10795 PF00793 DAHP synthetase I family CJO93_RS10800 PF00117 Glutamine amidotransferase class-I CJO93_RS10800 PF06418 CTP synthase N-terminus CJO93_RS10805 PF08386 TAP-like protein CJO93_RS10805 PF00561 alpha/beta hydrolase fold CJO93_RS10815 PF01841 Transglutaminase-like superfamily CJO93_RS10815 PF08379 Bacterial transglutaminase-like N-terminal region CJO93_RS10825 PF14403 Circularly permuted ATP-grasp type 2 CJO93_RS10830 PF00753 Metallo-beta-lactamase superfamily CJO93_RS10830 PF03772 Competence protein CJO93_RS10835 PF01026 TatD related DNase CJO93_RS10840 PF00005 ABC transporter CJO93_RS10845 PF02687 FtsX-like permease family CJO93_RS10845 PF12704 MacB-like periplasmic core domain CJO93_RS10855 PF17768 RecJ OB domain CJO93_RS10855 PF01368 DHH family CJO93_RS10855 PF02272 DHHA1 domain CJO93_RS10860 PF00037 4Fe-4S binding domain CJO93_RS10860 PF11953 Domain of unknown function (DUF3470) CJO93_RS10885 PF03601 Conserved hypothetical protein 698 CJO93_RS10890 PF03466 LysR substrate binding domain CJO93_RS10890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS10915 PF00551 Formyl transferase CJO93_RS10945 PF04267 Sarcosine oxidase, delta subunit family CJO93_RS10950 PF01266 FAD dependent oxidoreductase CJO93_RS10960 PF01965 DJ-1/PfpI family CJO93_RS10960 PF12833 Helix-turn-helix domain CJO93_RS10965 PF01381 Helix-turn-helix CJO93_RS10970 PF00155 Aminotransferase class I and II CJO93_RS10980 PF03466 LysR substrate binding domain CJO93_RS10980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS10985 PF07690 Major Facilitator Superfamily CJO93_RS10990 PF03466 LysR substrate binding domain CJO93_RS10990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS10995 PF00111 2Fe-2S iron-sulfur cluster binding domain CJO93_RS10995 PF00970 Oxidoreductase FAD-binding domain CJO93_RS10995 PF00175 Oxidoreductase NAD-binding domain CJO93_RS11000 PF00355 Rieske [2Fe-2S] domain CJO93_RS11000 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CJO93_RS11005 PF13577 SnoaL-like domain CJO93_RS11010 PF00355 Rieske [2Fe-2S] domain CJO93_RS11015 PF07883 Cupin domain CJO93_RS11020 PF01557 Fumarylacetoacetate (FAA) hydrolase family CJO93_RS11025 PF02798 Glutathione S-transferase, N-terminal domain CJO93_RS11025 PF14497 Glutathione S-transferase, C-terminal domain CJO93_RS11030 PF13609 Gram-negative porin CJO93_RS11040 PF13609 Gram-negative porin CJO93_RS11045 PF16338 Domain of unknown function (DUF4968) CJO93_RS11045 PF01055 Glycosyl hydrolases family 31 CJO93_RS11045 PF13802 Galactose mutarotase-like CJO93_RS11045 PF17137 Domain of unknown function (DUF5110) CJO93_RS11050 PF07690 Major Facilitator Superfamily CJO93_RS11055 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CJO93_RS11055 PF13378 Enolase C-terminal domain-like CJO93_RS11060 PF00392 Bacterial regulatory proteins, gntR family CJO93_RS11060 PF07729 FCD domain CJO93_RS11065 PF13006 Insertion element 4 transposase N-terminal CJO93_RS11065 PF01609 Transposase DDE domain CJO93_RS11075 PF00072 Response regulator receiver domain CJO93_RS11075 PF00486 Transcriptional regulatory protein, C terminal CJO93_RS11085 PF16736 Single Cache-like CJO93_RS11085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS11085 PF00989 PAS fold CJO93_RS11085 PF00512 His Kinase A (phospho-acceptor) domain CJO93_RS11095 PF00072 Response regulator receiver domain CJO93_RS11095 PF00486 Transcriptional regulatory protein, C terminal CJO93_RS11115 PF01066 CDP-alcohol phosphatidyltransferase CJO93_RS11120 PF01541 GIY-YIG catalytic domain CJO93_RS11120 PF02151 UvrB/uvrC motif CJO93_RS11120 PF08459 UvrC Helix-hairpin-helix N-terminal CJO93_RS11130 PF09285 Elongation factor P, C-terminal CJO93_RS11130 PF08207 Elongation factor P (EF-P) KOW-like domain CJO93_RS11130 PF01132 Elongation factor P (EF-P) OB domain CJO93_RS11135 PF00933 Glycosyl hydrolase family 3 N terminal domain CJO93_RS11140 PF01648 4'-phosphopantetheinyl transferase superfamily CJO93_RS11145 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CJO93_RS11155 PF01926 50S ribosome-binding GTPase CJO93_RS11155 PF07650 KH domain CJO93_RS11160 PF00035 Double-stranded RNA binding motif CJO93_RS11160 PF14622 Ribonuclease-III-like CJO93_RS11170 PF10502 Signal peptidase, peptidase S26 CJO93_RS11175 PF00009 Elongation factor Tu GTP binding domain CJO93_RS11175 PF00679 Elongation factor G C-terminus CJO93_RS11175 PF03144 Elongation factor Tu domain 2 CJO93_RS11175 PF06421 GTP-binding protein LepA C-terminus CJO93_RS11185 PF13180 PDZ domain CJO93_RS11185 PF17820 PDZ domain CJO93_RS11200 PF04542 Sigma-70 region 2 CJO93_RS11200 PF08281 Sigma-70, region 4 CJO93_RS11210 PF02801 Beta-ketoacyl synthase, C-terminal domain CJO93_RS11210 PF00109 Beta-ketoacyl synthase, N-terminal domain CJO93_RS11215 PF00550 Phosphopantetheine attachment site CJO93_RS11225 PF00698 Acyl transferase domain CJO93_RS11230 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CJO93_RS11230 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CJO93_RS11235 PF02504 Fatty acid synthesis protein CJO93_RS11240 PF01783 Ribosomal L32p protein family CJO93_RS11245 PF02620 Large ribosomal RNA subunit accumulation protein YceD CJO93_RS11250 PF02545 Maf-like protein CJO93_RS11255 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJO93_RS11260 PF06965 Na+/H+ antiporter 1 CJO93_RS11260 PF01343 Peptidase family S49 CJO93_RS11270 PF13419 Haloacid dehalogenase-like hydrolase CJO93_RS11275 PF00849 RNA pseudouridylate synthase CJO93_RS11275 PF01479 S4 domain CJO93_RS11280 PF10150 Ribonuclease E/G family CJO93_RS11280 PF12111 Polyribonucleotide phosphorylase C terminal CJO93_RS11280 PF00575 S1 RNA binding domain CJO93_RS11285 PF04055 Radical SAM superfamily CJO93_RS11285 PF06463 Molybdenum Cofactor Synthesis C CJO93_RS11290 PF12804 MobA-like NTP transferase domain CJO93_RS11295 PF03453 MoeA N-terminal region (domain I and II) CJO93_RS11295 PF03454 MoeA C-terminal region (domain IV) CJO93_RS11295 PF00994 Probable molybdopterin binding domain CJO93_RS11305 PF02646 RmuC family CJO93_RS11310 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CJO93_RS11310 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CJO93_RS11320 PF02589 LUD domain CJO93_RS11325 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CJO93_RS11325 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CJO93_RS11335 PF00106 short chain dehydrogenase CJO93_RS11340 PF01336 OB-fold nucleic acid binding domain CJO93_RS11340 PF00152 tRNA synthetases class II (D, K and N) CJO93_RS11350 PF01609 Transposase DDE domain CJO93_RS11350 PF13006 Insertion element 4 transposase N-terminal CJO93_RS11355 PF04384 Iron-sulphur cluster assembly CJO93_RS11360 PF00111 2Fe-2S iron-sulfur cluster binding domain CJO93_RS11365 PF00012 Hsp70 protein CJO93_RS11370 PF00226 DnaJ domain CJO93_RS11370 PF07743 HSCB C-terminal oligomerisation domain CJO93_RS11380 PF01521 Iron-sulphur cluster biosynthesis CJO93_RS11385 PF01592 NifU-like N terminal domain CJO93_RS11390 PF00266 Aminotransferase class-V CJO93_RS11395 PF02082 Transcriptional regulator CJO93_RS11400 PF13407 Periplasmic binding protein domain CJO93_RS11405 PF00005 ABC transporter CJO93_RS11410 PF02653 Branched-chain amino acid transport system / permease component CJO93_RS11415 PF00356 Bacterial regulatory proteins, lacI family CJO93_RS11420 PF00294 pfkB family carbohydrate kinase CJO93_RS11430 PF12344 Ultra-violet resistance protein B CJO93_RS11430 PF00271 Helicase conserved C-terminal domain CJO93_RS11430 PF02151 UvrB/uvrC motif CJO93_RS11430 PF17757 UvrB interaction domain CJO93_RS11430 PF04851 Type III restriction enzyme, res subunit CJO93_RS11435 PF00155 Aminotransferase class I and II CJO93_RS11445 PF17938 Tetracyclin repressor-like, C-terminal domain CJO93_RS11445 PF00440 Bacterial regulatory proteins, tetR family CJO93_RS11450 PF04060 Putative Fe-S cluster CJO93_RS11455 PF10576 Iron-sulfur binding domain of endonuclease III CJO93_RS11455 PF00730 HhH-GPD superfamily base excision DNA repair protein CJO93_RS11455 PF00633 Helix-hairpin-helix motif CJO93_RS11460 PF00881 Nitroreductase family CJO93_RS11465 PF13737 Transposase DDE domain CJO93_RS11485 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CJO93_RS11490 PF00034 Cytochrome c CJO93_RS11495 PF01434 Peptidase family M41 CJO93_RS11495 PF00004 ATPase family associated with various cellular activities (AAA) CJO93_RS11495 PF17862 AAA+ lid domain CJO93_RS11535 PF00183 Hsp90 protein CJO93_RS11535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS11540 PF00155 Aminotransferase class I and II CJO93_RS11545 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CJO93_RS11545 PF01411 tRNA synthetases class II (A) CJO93_RS11545 PF02272 DHHA1 domain CJO93_RS11550 PF00892 EamA-like transporter family CJO93_RS11560 PF00155 Aminotransferase class I and II CJO93_RS11565 PF13417 Glutathione S-transferase, N-terminal domain CJO93_RS11565 PF00043 Glutathione S-transferase, C-terminal domain CJO93_RS11580 PF02652 L-lactate permease CJO93_RS11595 PF00521 DNA gyrase/topoisomerase IV, subunit A CJO93_RS11600 PF01464 Transglycosylase SLT domain CJO93_RS11605 PF00986 DNA gyrase B subunit, carboxyl terminus CJO93_RS11605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS11605 PF01751 Toprim domain CJO93_RS11605 PF00204 DNA gyrase B CJO93_RS11610 PF12848 ABC transporter CJO93_RS11610 PF00005 ABC transporter CJO93_RS11610 PF16326 ABC transporter C-terminal domain CJO93_RS11620 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJO93_RS11650 PF00270 DEAD/DEAH box helicase CJO93_RS11650 PF00271 Helicase conserved C-terminal domain CJO93_RS11655 PF03781 Sulfatase-modifying factor enzyme 1 CJO93_RS11655 PF12867 DinB superfamily CJO93_RS11660 PF10017 Histidine-specific methyltransferase, SAM-dependent CJO93_RS11665 PF03741 Integral membrane protein TerC family CJO93_RS11670 PF00291 Pyridoxal-phosphate dependent enzyme CJO93_RS11675 PF00303 Thymidylate synthase CJO93_RS11680 PF00186 Dihydrofolate reductase CJO93_RS11685 PF01523 Putative modulator of DNA gyrase CJO93_RS11690 PF04751 Protein of unknown function (DUF615) CJO93_RS11695 PF00994 Probable molybdopterin binding domain CJO93_RS11700 PF00929 Exonuclease CJO93_RS11705 PF01435 Peptidase family M48 CJO93_RS11710 PF03193 RsgA GTPase CJO93_RS11720 PF17113 Regulatory signalling modulator protein AmpE CJO93_RS11720 PF03186 CobD/Cbib protein CJO93_RS11725 PF00293 NUDIX domain CJO93_RS11730 PF01245 Ribosomal protein L19 CJO93_RS11735 PF01746 tRNA (Guanine-1)-methyltransferase CJO93_RS11740 PF05239 PRC-barrel domain CJO93_RS11740 PF01782 RimM N-terminal domain CJO93_RS11745 PF00886 Ribosomal protein S16 CJO93_RS11750 PF07995 Glucose / Sorbosone dehydrogenase CJO93_RS11770 PF04055 Radical SAM superfamily CJO93_RS11775 PF01037 Lrp/AsnC ligand binding domain CJO93_RS11780 PF01266 FAD dependent oxidoreductase CJO93_RS11785 PF12806 Acetyl-CoA dehydrogenase C-terminal like CJO93_RS11785 PF02770 Acyl-CoA dehydrogenase, middle domain CJO93_RS11785 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJO93_RS11785 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJO93_RS11790 PF01012 Electron transfer flavoprotein domain CJO93_RS11790 PF00766 Electron transfer flavoprotein FAD-binding domain CJO93_RS11795 PF01012 Electron transfer flavoprotein domain CJO93_RS11800 PF03180 NLPA lipoprotein CJO93_RS11805 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS11810 PF00005 ABC transporter CJO93_RS11810 PF09383 NIL domain CJO93_RS11815 PF00850 Histone deacetylase domain CJO93_RS11820 PF13406 Transglycosylase SLT domain CJO93_RS11825 PF00291 Pyridoxal-phosphate dependent enzyme CJO93_RS11835 PF01370 NAD dependent epimerase/dehydratase family CJO93_RS11840 PF00294 pfkB family carbohydrate kinase CJO93_RS11845 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CJO93_RS11845 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CJO93_RS11845 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CJO93_RS11850 PF18073 Rubredoxin metal binding domain CJO93_RS11860 PF00216 Bacterial DNA-binding protein CJO93_RS11865 PF00575 S1 RNA binding domain CJO93_RS11870 PF02224 Cytidylate kinase CJO93_RS11875 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CJO93_RS11880 PF02153 Prephenate dehydrogenase CJO93_RS11880 PF01842 ACT domain CJO93_RS11885 PF00155 Aminotransferase class I and II CJO93_RS11890 PF00800 Prephenate dehydratase CJO93_RS11890 PF01817 Chorismate mutase type II CJO93_RS11890 PF01842 ACT domain CJO93_RS11895 PF00266 Aminotransferase class-V CJO93_RS11905 PF03989 DNA gyrase C-terminal domain, beta-propeller CJO93_RS11905 PF00521 DNA gyrase/topoisomerase IV, subunit A CJO93_RS11910 PF00691 OmpA family CJO93_RS11925 PF13419 Haloacid dehalogenase-like hydrolase CJO93_RS11945 PF02796 Helix-turn-helix domain of resolvase CJO93_RS11945 PF00239 Resolvase, N terminal domain CJO93_RS11965 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CJO93_RS11965 PF17287 POTRA domain CJO93_RS11965 PF08479 POTRA domain, ShlB-type CJO93_RS11970 PF13737 Transposase DDE domain CJO93_RS12030 PF13737 Transposase DDE domain CJO93_RS12035 PF00873 AcrB/AcrD/AcrF family CJO93_RS12045 PF00440 Bacterial regulatory proteins, tetR family CJO93_RS12050 PF02321 Outer membrane efflux protein CJO93_RS12055 PF00106 short chain dehydrogenase CJO93_RS12140 PF05598 Transposase domain (DUF772) CJO93_RS12140 PF01609 Transposase DDE domain CJO93_RS12150 PF13296 Putative type VI secretion system Rhs element Vgr CJO93_RS12150 PF04717 Type VI secretion system, phage-baseplate injector CJO93_RS12150 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) CJO93_RS12210 PF00440 Bacterial regulatory proteins, tetR family CJO93_RS12215 PF00106 short chain dehydrogenase CJO93_RS12220 PF00107 Zinc-binding dehydrogenase CJO93_RS12220 PF08240 Alcohol dehydrogenase GroES-like domain CJO93_RS12265 PF01609 Transposase DDE domain CJO93_RS12265 PF05598 Transposase domain (DUF772) CJO93_RS12270 PF01609 Transposase DDE domain CJO93_RS12270 PF05598 Transposase domain (DUF772) CJO93_RS12275 PF00881 Nitroreductase family CJO93_RS12290 PF03330 Lytic transglycolase CJO93_RS12295 PF00043 Glutathione S-transferase, C-terminal domain CJO93_RS12295 PF02798 Glutathione S-transferase, N-terminal domain CJO93_RS12310 PF01810 LysE type translocator CJO93_RS12325 PF01206 Sulfurtransferase TusA CJO93_RS12330 PF00293 NUDIX domain CJO93_RS12330 PF13344 Haloacid dehalogenase-like hydrolase CJO93_RS12335 PF01212 Beta-eliminating lyase CJO93_RS12340 PF01361 Tautomerase enzyme CJO93_RS12345 PF00596 Class II Aldolase and Adducin N-terminal domain CJO93_RS12350 PF06779 Uncharacterised MFS-type transporter YbfB CJO93_RS12355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS12355 PF03466 LysR substrate binding domain CJO93_RS12365 PF01145 SPFH domain / Band 7 family CJO93_RS12375 PF00593 TonB dependent receptor CJO93_RS12375 PF07715 TonB-dependent Receptor Plug Domain CJO93_RS12390 PF02272 DHHA1 domain CJO93_RS12390 PF01411 tRNA synthetases class II (A) CJO93_RS12390 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CJO93_RS12395 PF02515 CoA-transferase family III CJO93_RS12405 PF07331 Tripartite tricarboxylate transporter TctB family CJO93_RS12410 PF01970 Tripartite tricarboxylate transporter TctA family CJO93_RS12420 PF00749 tRNA synthetases class I (E and Q), catalytic domain CJO93_RS12420 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CJO93_RS12450 PF07152 YaeQ protein CJO93_RS12455 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CJO93_RS12465 PF04752 ChaC-like protein CJO93_RS12475 PF00501 AMP-binding enzyme CJO93_RS12475 PF13193 AMP-binding enzyme C-terminal domain CJO93_RS12480 PF00085 Thioredoxin CJO93_RS12490 PF01814 Hemerythrin HHE cation binding domain CJO93_RS12495 PF00141 Peroxidase CJO93_RS12500 PF00899 ThiF family CJO93_RS12505 PF05170 AsmA family CJO93_RS12510 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CJO93_RS12510 PF00034 Cytochrome c CJO93_RS12515 PF00732 GMC oxidoreductase CJO93_RS12515 PF05199 GMC oxidoreductase CJO93_RS12525 PF00933 Glycosyl hydrolase family 3 N terminal domain CJO93_RS12530 PF01243 Pyridoxamine 5'-phosphate oxidase CJO93_RS12530 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CJO93_RS12545 PF01625 Peptide methionine sulfoxide reductase CJO93_RS12550 PF01613 Flavin reductase like domain CJO93_RS12560 PF01037 Lrp/AsnC ligand binding domain CJO93_RS12565 PF04199 Putative cyclase CJO93_RS12570 PF00266 Aminotransferase class-V CJO93_RS12575 PF03301 Tryptophan 2,3-dioxygenase CJO93_RS12585 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJO93_RS12585 PF02770 Acyl-CoA dehydrogenase, middle domain CJO93_RS12585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJO93_RS12590 PF00860 Permease family CJO93_RS12595 PF00578 AhpC/TSA family CJO93_RS12595 PF10417 C-terminal domain of 1-Cys peroxiredoxin CJO93_RS12600 PF05957 Bacterial protein of unknown function (DUF883) CJO93_RS12620 PF00005 ABC transporter CJO93_RS12625 PF03649 Uncharacterised protein family (UPF0014) CJO93_RS12630 PF00293 NUDIX domain CJO93_RS12650 PF00793 DAHP synthetase I family CJO93_RS12655 PF04344 Chemotaxis phosphatase, CheZ CJO93_RS12660 PF00072 Response regulator receiver domain CJO93_RS12670 PF01609 Transposase DDE domain CJO93_RS12670 PF13006 Insertion element 4 transposase N-terminal CJO93_RS12685 PF06508 Queuosine biosynthesis protein QueC CJO93_RS12695 PF00691 OmpA family CJO93_RS12700 PF07676 WD40-like Beta Propeller Repeat CJO93_RS12700 PF04052 TolB amino-terminal domain CJO93_RS12710 PF02472 Biopolymer transport protein ExbD/TolR CJO93_RS12715 PF01618 MotA/TolQ/ExbB proton channel family CJO93_RS12720 PF03061 Thioesterase superfamily CJO93_RS12725 PF00106 short chain dehydrogenase CJO93_RS12730 PF00464 Serine hydroxymethyltransferase CJO93_RS12735 PF03477 ATP cone domain CJO93_RS12785 PF05567 Neisseria PilC beta-propeller domain CJO93_RS12800 PF01872 RibD C-terminal domain CJO93_RS12800 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CJO93_RS12805 PF00677 Lumazine binding domain CJO93_RS12810 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CJO93_RS12810 PF00925 GTP cyclohydrolase II CJO93_RS12815 PF00885 6,7-dimethyl-8-ribityllumazine synthase CJO93_RS12820 PF01029 NusB family CJO93_RS12825 PF00155 Aminotransferase class I and II CJO93_RS12830 PF01464 Transglycosylase SLT domain CJO93_RS12830 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CJO93_RS12835 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CJO93_RS12865 PF02390 Putative methyltransferase CJO93_RS12870 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CJO93_RS12875 PF02673 Bacitracin resistance protein BacA CJO93_RS12885 PF03692 Putative zinc- or iron-chelating domain CJO93_RS12895 PF00440 Bacterial regulatory proteins, tetR family CJO93_RS12895 PF08361 MAATS-type transcriptional repressor, C-terminal region CJO93_RS12905 PF01206 Sulfurtransferase TusA CJO93_RS12905 PF00581 Rhodanese-like domain CJO93_RS12920 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CJO93_RS12920 PF00534 Glycosyl transferases group 1 CJO93_RS12925 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CJO93_RS12930 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CJO93_RS12930 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CJO93_RS12930 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CJO93_RS12930 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CJO93_RS12940 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CJO93_RS12940 PF00953 Glycosyl transferase family 4 CJO93_RS12960 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CJO93_RS12965 PF00483 Nucleotidyl transferase CJO93_RS12970 PF04321 RmlD substrate binding domain CJO93_RS12975 PF16363 GDP-mannose 4,6 dehydratase CJO93_RS12980 PF00149 Calcineurin-like phosphoesterase CJO93_RS12985 PF01553 Acyltransferase CJO93_RS12990 PF01979 Amidohydrolase family CJO93_RS12995 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CJO93_RS12995 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CJO93_RS13000 PF00156 Phosphoribosyl transferase domain CJO93_RS13005 PF03652 Holliday junction resolvase CJO93_RS13010 PF02622 Uncharacterized ACR, COG1678 CJO93_RS13015 PF00849 RNA pseudouridylate synthase CJO93_RS13015 PF01479 S4 domain CJO93_RS13025 PF00072 Response regulator receiver domain CJO93_RS13025 PF01627 Hpt domain CJO93_RS13025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS13025 PF02895 Signal transducing histidine kinase, homodimeric domain CJO93_RS13025 PF01584 CheW-like domain CJO93_RS13030 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CJO93_RS13030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO93_RS13040 PF00072 Response regulator receiver domain CJO93_RS13045 PF00072 Response regulator receiver domain CJO93_RS13050 PF00301 Rubredoxin CJO93_RS13055 PF00202 Aminotransferase class-III CJO93_RS13060 PF00701 Dihydrodipicolinate synthetase family CJO93_RS13070 PF04011 LemA family CJO93_RS13115 PF13629 Pilus formation protein N terminal region CJO93_RS13115 PF04972 BON domain CJO93_RS13115 PF00263 Bacterial type II and III secretion system protein CJO93_RS13130 PF00437 Type II/IV secretion system protein CJO93_RS13175 PF05987 Bacterial protein of unknown function (DUF898) CJO93_RS13180 PF00118 TCP-1/cpn60 chaperonin family CJO93_RS13185 PF00166 Chaperonin 10 Kd subunit CJO93_RS13205 PF00174 Oxidoreductase molybdopterin binding domain CJO93_RS13210 PF01292 Prokaryotic cytochrome b561 CJO93_RS13215 PF04381 Putative exonuclease, RdgC CJO93_RS13235 PF03466 LysR substrate binding domain CJO93_RS13235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS13240 PF00892 EamA-like transporter family CJO93_RS13280 PF02203 Tar ligand binding domain homologue CJO93_RS13280 PF00672 HAMP domain CJO93_RS13280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO93_RS13285 PF00107 Zinc-binding dehydrogenase CJO93_RS13285 PF08240 Alcohol dehydrogenase GroES-like domain CJO93_RS13290 PF00756 Putative esterase CJO93_RS13305 PF04403 Paraquat-inducible protein A CJO93_RS13310 PF02470 MlaD protein CJO93_RS13320 PF00392 Bacterial regulatory proteins, gntR family CJO93_RS13320 PF00155 Aminotransferase class I and II CJO93_RS13350 PF11871 Domain of unknown function (DUF3391) CJO93_RS13350 PF01966 HD domain CJO93_RS13365 PF01425 Amidase CJO93_RS13370 PF03707 Bacterial signalling protein N terminal repeat CJO93_RS13370 PF00990 Diguanylate cyclase, GGDEF domain CJO93_RS13370 PF00563 EAL domain CJO93_RS13385 PF07690 Major Facilitator Superfamily CJO93_RS13390 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CJO93_RS13395 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CJO93_RS13405 PF13737 Transposase DDE domain CJO93_RS13415 PF13419 Haloacid dehalogenase-like hydrolase CJO93_RS13425 PF01300 Telomere recombination CJO93_RS13425 PF03481 Putative GTP-binding controlling metal-binding CJO93_RS13430 PF02222 ATP-grasp domain CJO93_RS13430 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CJO93_RS13435 PF00731 AIR carboxylase CJO93_RS13440 PF01259 SAICAR synthetase CJO93_RS13445 PF01116 Fructose-bisphosphate aldolase class-II CJO93_RS13450 PF00224 Pyruvate kinase, barrel domain CJO93_RS13450 PF02887 Pyruvate kinase, alpha/beta domain CJO93_RS13455 PF00162 Phosphoglycerate kinase CJO93_RS13460 PF00892 EamA-like transporter family CJO93_RS13475 PF01063 Amino-transferase class IV CJO93_RS13485 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CJO93_RS13495 PF00561 alpha/beta hydrolase fold CJO93_RS13505 PF01435 Peptidase family M48 CJO93_RS13505 PF13181 Tetratricopeptide repeat CJO93_RS13510 PF01967 MoaC family CJO93_RS13520 PF07963 Prokaryotic N-terminal methylation motif CJO93_RS13520 PF00114 Pilin (bacterial filament) CJO93_RS13525 PF07963 Prokaryotic N-terminal methylation motif CJO93_RS13525 PF00114 Pilin (bacterial filament) CJO93_RS13530 PF03741 Integral membrane protein TerC family CJO93_RS13535 PF02629 CoA binding domain CJO93_RS13535 PF00549 CoA-ligase CJO93_RS13540 PF00549 CoA-ligase CJO93_RS13540 PF08442 ATP-grasp domain CJO93_RS13550 PF02631 RecX family CJO93_RS13555 PF00154 recA bacterial DNA recombination protein CJO93_RS13560 PF00486 Transcriptional regulatory protein, C terminal CJO93_RS13560 PF00072 Response regulator receiver domain CJO93_RS13575 PF00083 Sugar (and other) transporter CJO93_RS13575 PF08946 Osmosensory transporter coiled coil CJO93_RS13590 PF01494 FAD binding domain CJO93_RS13600 PF00486 Transcriptional regulatory protein, C terminal CJO93_RS13600 PF00072 Response regulator receiver domain CJO93_RS13605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS13605 PF03466 LysR substrate binding domain CJO93_RS13610 PF05726 Pirin C-terminal cupin domain CJO93_RS13610 PF02678 Pirin CJO93_RS13615 PF01636 Phosphotransferase enzyme family CJO93_RS13620 PF00271 Helicase conserved C-terminal domain CJO93_RS13620 PF00270 DEAD/DEAH box helicase CJO93_RS13625 PF00440 Bacterial regulatory proteins, tetR family CJO93_RS13630 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJO93_RS13630 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJO93_RS13630 PF02770 Acyl-CoA dehydrogenase, middle domain CJO93_RS13630 PF09317 Domain of unknown function (DUF1974) CJO93_RS13645 PF13193 AMP-binding enzyme C-terminal domain CJO93_RS13645 PF00501 AMP-binding enzyme CJO93_RS13655 PF05598 Transposase domain (DUF772) CJO93_RS13655 PF01609 Transposase DDE domain CJO93_RS13675 PF04055 Radical SAM superfamily CJO93_RS13675 PF01938 TRAM domain CJO93_RS13675 PF00919 Uncharacterized protein family UPF0004 CJO93_RS13680 PF02562 PhoH-like protein CJO93_RS13685 PF02130 Uncharacterized protein family UPF0054 CJO93_RS13690 PF03471 Transporter associated domain CJO93_RS13690 PF00571 CBS domain CJO93_RS13695 PF00795 Carbon-nitrogen hydrolase CJO93_RS13700 PF02091 Glycyl-tRNA synthetase alpha subunit CJO93_RS13710 PF02092 Glycyl-tRNA synthetase beta subunit CJO93_RS13710 PF05746 DALR anticodon binding domain CJO93_RS13720 PF01553 Acyltransferase CJO93_RS13730 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CJO93_RS13735 PF00892 EamA-like transporter family CJO93_RS13740 PF00398 Ribosomal RNA adenine dimethylase CJO93_RS13745 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CJO93_RS13750 PF09312 SurA N-terminal domain CJO93_RS13755 PF04453 LPS transport system D CJO93_RS13760 PF01636 Phosphotransferase enzyme family CJO93_RS13775 PF00483 Nucleotidyl transferase CJO93_RS13780 PF03707 Bacterial signalling protein N terminal repeat CJO93_RS13780 PF00990 Diguanylate cyclase, GGDEF domain CJO93_RS13780 PF00563 EAL domain CJO93_RS13785 PF00557 Metallopeptidase family M24 CJO93_RS13785 PF05195 Aminopeptidase P, N-terminal domain CJO93_RS13790 PF01494 FAD binding domain CJO93_RS13795 PF01266 FAD dependent oxidoreductase CJO93_RS13800 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system CJO93_RS13810 PF01207 Dihydrouridine synthase (Dus) CJO93_RS13815 PF02954 Bacterial regulatory protein, Fis family CJO93_RS13820 PF02142 MGS-like domain CJO93_RS13820 PF01808 AICARFT/IMPCHase bienzyme CJO93_RS13825 PF02075 Crossover junction endodeoxyribonuclease RuvC CJO93_RS13835 PF01330 RuvA N terminal domain CJO93_RS13835 PF07499 RuvA, C-terminal domain CJO93_RS13840 PF05496 Holliday junction DNA helicase RuvB P-loop domain CJO93_RS13840 PF05491 RuvB C-terminal winged helix domain CJO93_RS13840 PF17864 RuvB AAA lid domain CJO93_RS13845 PF00300 Histidine phosphatase superfamily (branch 1) CJO93_RS13855 PF02580 D-Tyr-tRNA(Tyr) deacylase CJO93_RS13860 PF01479 S4 domain CJO93_RS13860 PF00579 tRNA synthetases class I (W and Y) CJO93_RS13865 PF03702 Anhydro-N-acetylmuramic acid kinase CJO93_RS13870 PF01521 Iron-sulphur cluster biosynthesis CJO93_RS13885 PF00380 Ribosomal protein S9/S16 CJO93_RS13890 PF00572 Ribosomal protein L13 CJO93_RS13910 PF01979 Amidohydrolase family CJO93_RS13915 PF05161 MOFRL family CJO93_RS13915 PF13660 Domain of unknown function (DUF4147) CJO93_RS13920 PF00180 Isocitrate/isopropylmalate dehydrogenase CJO93_RS13925 PF13230 Glutamine amidotransferases class-II CJO93_RS13930 PF00005 ABC transporter CJO93_RS13935 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS13940 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS13945 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJO93_RS13950 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CJO93_RS13950 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CJO93_RS13960 PF00664 ABC transporter transmembrane region CJO93_RS13960 PF00005 ABC transporter CJO93_RS13965 PF03061 Thioesterase superfamily CJO93_RS13970 PF00378 Enoyl-CoA hydratase/isomerase CJO93_RS13975 PF00108 Thiolase, N-terminal domain CJO93_RS13975 PF02803 Thiolase, C-terminal domain CJO93_RS13980 PF00378 Enoyl-CoA hydratase/isomerase CJO93_RS13980 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CJO93_RS13980 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CJO93_RS13985 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJO93_RS13985 PF02770 Acyl-CoA dehydrogenase, middle domain CJO93_RS13985 PF12806 Acetyl-CoA dehydrogenase C-terminal like CJO93_RS13985 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJO93_RS13995 PF01144 Coenzyme A transferase CJO93_RS14000 PF13091 PLD-like domain CJO93_RS14005 PF03372 Endonuclease/Exonuclease/phosphatase family CJO93_RS14010 PF00293 NUDIX domain CJO93_RS14020 PF01336 OB-fold nucleic acid binding domain CJO93_RS14020 PF00152 tRNA synthetases class II (D, K and N) CJO93_RS14020 PF02938 GAD domain CJO93_RS14040 PF05724 Thiopurine S-methyltransferase (TPMT) CJO93_RS14045 PF03109 ABC1 family CJO93_RS14060 PF01209 ubiE/COQ5 methyltransferase family CJO93_RS14070 PF06472 ABC transporter transmembrane region 2 CJO93_RS14070 PF00005 ABC transporter CJO93_RS14085 PF09335 SNARE associated Golgi protein CJO93_RS14090 PF07670 Nucleoside recognition CJO93_RS14100 PF17655 Inward rectifier potassium channel C-terminal domain CJO93_RS14100 PF07885 Ion channel CJO93_RS14105 PF00585 C-terminal regulatory domain of Threonine dehydratase CJO93_RS14105 PF00291 Pyridoxal-phosphate dependent enzyme CJO93_RS14110 PF14489 QueF-like protein CJO93_RS14110 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CJO93_RS14140 PF00501 AMP-binding enzyme CJO93_RS14140 PF13193 AMP-binding enzyme C-terminal domain CJO93_RS14145 PF01202 Shikimate kinase CJO93_RS14155 PF07859 alpha/beta hydrolase fold CJO93_RS14160 PF04143 Sulphur transport CJO93_RS14190 PF07977 FabA-like domain CJO93_RS14210 PF01522 Polysaccharide deacetylase CJO93_RS14215 PF02801 Beta-ketoacyl synthase, C-terminal domain CJO93_RS14215 PF00109 Beta-ketoacyl synthase, N-terminal domain CJO93_RS14240 PF01527 Transposase CJO93_RS14255 PF00436 Single-strand binding protein family CJO93_RS14260 PF07690 Major Facilitator Superfamily CJO93_RS14275 PF01810 LysE type translocator CJO93_RS14280 PF00156 Phosphoribosyl transferase domain CJO93_RS14285 PF01965 DJ-1/PfpI family CJO93_RS14295 PF02254 TrkA-N domain CJO93_RS14295 PF02080 TrkA-C domain CJO93_RS14295 PF00999 Sodium/hydrogen exchanger family CJO93_RS14305 PF00571 CBS domain CJO93_RS14305 PF01380 SIS domain CJO93_RS14325 PF00005 ABC transporter CJO93_RS14330 PF00309 Sigma-54 factor, Activator interacting domain (AID) CJO93_RS14330 PF04552 Sigma-54, DNA binding domain CJO93_RS14330 PF04963 Sigma-54 factor, core binding domain CJO93_RS14335 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CJO93_RS14340 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CJO93_RS14345 PF02603 HPr Serine kinase N terminus CJO93_RS14345 PF07475 HPr Serine kinase C-terminal domain CJO93_RS14355 PF03668 P-loop ATPase protein family CJO93_RS14365 PF00633 Helix-hairpin-helix motif CJO93_RS14365 PF10576 Iron-sulfur binding domain of endonuclease III CJO93_RS14365 PF14815 NUDIX domain CJO93_RS14365 PF00730 HhH-GPD superfamily base excision DNA repair protein CJO93_RS14375 PF06827 Zinc finger found in FPG and IleRS CJO93_RS14375 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CJO93_RS14375 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CJO93_RS14385 PF03550 Outer membrane lipoprotein LolB CJO93_RS14390 PF00288 GHMP kinases N terminal domain CJO93_RS14390 PF08544 GHMP kinases C terminal CJO93_RS14400 PF14572 Phosphoribosyl synthetase-associated domain CJO93_RS14400 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CJO93_RS14405 PF01386 Ribosomal L25p family CJO93_RS14405 PF14693 Ribosomal protein TL5, C-terminal domain CJO93_RS14410 PF01195 Peptidyl-tRNA hydrolase CJO93_RS14425 PF01467 Cytidylyltransferase-like CJO93_RS14435 PF05193 Peptidase M16 inactive domain CJO93_RS14440 PF05193 Peptidase M16 inactive domain CJO93_RS14440 PF00675 Insulinase (Peptidase family M16) CJO93_RS14445 PF02881 SRP54-type protein, helical bundle domain CJO93_RS14445 PF00448 SRP54-type protein, GTPase domain CJO93_RS14450 PF01810 LysE type translocator CJO93_RS14455 PF02798 Glutathione S-transferase, N-terminal domain CJO93_RS14455 PF14497 Glutathione S-transferase, C-terminal domain CJO93_RS14460 PF01557 Fumarylacetoacetate (FAA) hydrolase family CJO93_RS14465 PF03861 ANTAR domain CJO93_RS14465 PF08376 Nitrate and nitrite sensing CJO93_RS14480 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS14485 PF00005 ABC transporter CJO93_RS14490 PF02885 Glycosyl transferase family, helical bundle domain CJO93_RS14495 PF02678 Pirin CJO93_RS14495 PF05726 Pirin C-terminal cupin domain CJO93_RS14510 PF04545 Sigma-70, region 4 CJO93_RS14510 PF04542 Sigma-70 region 2 CJO93_RS14510 PF00140 Sigma-70 factor, region 1.2 CJO93_RS14515 PF02630 SCO1/SenC CJO93_RS14520 PF01040 UbiA prenyltransferase family CJO93_RS14525 PF02628 Cytochrome oxidase assembly protein CJO93_RS14545 PF00510 Cytochrome c oxidase subunit III CJO93_RS14555 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 CJO93_RS14560 PF00115 Cytochrome C and Quinol oxidase polypeptide I CJO93_RS14565 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CJO93_RS14565 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CJO93_RS14575 PF08241 Methyltransferase domain CJO93_RS14580 PF00156 Phosphoribosyl transferase domain CJO93_RS14585 PF00588 SpoU rRNA Methylase family CJO93_RS14590 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CJO93_RS14590 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CJO93_RS14595 PF02556 Preprotein translocase subunit SecB CJO93_RS14600 PF00462 Glutaredoxin CJO93_RS14605 PF00581 Rhodanese-like domain CJO93_RS14610 PF00300 Histidine phosphatase superfamily (branch 1) CJO93_RS14615 PF03572 Peptidase family S41 CJO93_RS14615 PF13180 PDZ domain CJO93_RS14620 PF00899 ThiF family CJO93_RS14625 PF00210 Ferritin-like domain CJO93_RS14635 PF02896 PEP-utilising enzyme, TIM barrel domain CJO93_RS14635 PF00391 PEP-utilising enzyme, mobile domain CJO93_RS14635 PF05524 PEP-utilising enzyme, N-terminal CJO93_RS14640 PF00381 PTS HPr component phosphorylation site CJO93_RS14650 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CJO93_RS14650 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CJO93_RS14660 PF00909 Ammonium Transporter Family CJO93_RS14665 PF00543 Nitrogen regulatory protein P-II CJO93_RS14675 PF04380 Membrane fusogenic activity CJO93_RS14700 PF05598 Transposase domain (DUF772) CJO93_RS14700 PF01609 Transposase DDE domain CJO93_RS14825 PF00264 Common central domain of tyrosinase CJO93_RS14840 PF01661 Macro domain CJO93_RS14845 PF00578 AhpC/TSA family CJO93_RS14850 PF02954 Bacterial regulatory protein, Fis family CJO93_RS14850 PF00072 Response regulator receiver domain CJO93_RS14850 PF00158 Sigma-54 interaction domain CJO93_RS14855 PF00512 His Kinase A (phospho-acceptor) domain CJO93_RS14855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS14860 PF00375 Sodium:dicarboxylate symporter family CJO93_RS14875 PF00768 D-alanyl-D-alanine carboxypeptidase CJO93_RS14875 PF07943 Penicillin-binding protein 5, C-terminal domain CJO93_RS14880 PF04359 Protein of unknown function (DUF493) CJO93_RS14885 PF03466 LysR substrate binding domain CJO93_RS14885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS14895 PF03099 Biotin/lipoate A/B protein ligase family CJO93_RS14900 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CJO93_RS14900 PF04055 Radical SAM superfamily CJO93_RS14940 PF00005 ABC transporter CJO93_RS14940 PF09383 NIL domain CJO93_RS14945 PF02405 Permease MlaE CJO93_RS14950 PF03099 Biotin/lipoate A/B protein ligase family CJO93_RS14950 PF02237 Biotin protein ligase C terminal domain CJO93_RS14950 PF08279 HTH domain CJO93_RS14955 PF03309 Type III pantothenate kinase CJO93_RS14965 PF01467 Cytidylyltransferase-like CJO93_RS14975 PF00255 Glutathione peroxidase CJO93_RS14990 PF00378 Enoyl-CoA hydratase/isomerase CJO93_RS15020 PF00561 alpha/beta hydrolase fold CJO93_RS15025 PF12091 Protein of unknown function (DUF3567) CJO93_RS15035 PF02574 Homocysteine S-methyltransferase CJO93_RS15035 PF00809 Pterin binding enzyme CJO93_RS15035 PF02607 B12 binding domain CJO93_RS15035 PF02310 B12 binding domain CJO93_RS15035 PF02965 Vitamin B12 dependent methionine synthase, activation domain CJO93_RS15040 PF02310 B12 binding domain CJO93_RS15040 PF02965 Vitamin B12 dependent methionine synthase, activation domain CJO93_RS15040 PF02574 Homocysteine S-methyltransferase CJO93_RS15040 PF00809 Pterin binding enzyme CJO93_RS15040 PF02607 B12 binding domain CJO93_RS15050 PF00196 Bacterial regulatory proteins, luxR family CJO93_RS15050 PF00072 Response regulator receiver domain CJO93_RS15055 PF00072 Response regulator receiver domain CJO93_RS15055 PF04397 LytTr DNA-binding domain CJO93_RS15065 PF17200 Single Cache domain 2 CJO93_RS15065 PF07730 Histidine kinase CJO93_RS15075 PF00750 tRNA synthetases class I (R) CJO93_RS15075 PF03485 Arginyl tRNA synthetase N terminal domain CJO93_RS15075 PF05746 DALR anticodon binding domain CJO93_RS15085 PF13462 Thioredoxin CJO93_RS15090 PF00106 short chain dehydrogenase CJO93_RS15100 PF05598 Transposase domain (DUF772) CJO93_RS15100 PF01609 Transposase DDE domain CJO93_RS15105 PF13296 Putative type VI secretion system Rhs element Vgr CJO93_RS15105 PF04717 Type VI secretion system, phage-baseplate injector CJO93_RS15105 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) CJO93_RS15135 PF03992 Antibiotic biosynthesis monooxygenase CJO93_RS15145 PF13411 MerR HTH family regulatory protein CJO93_RS15150 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJO93_RS15150 PF02770 Acyl-CoA dehydrogenase, middle domain CJO93_RS15150 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJO93_RS15155 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CJO93_RS15160 PF00484 Carbonic anhydrase CJO93_RS15165 PF02803 Thiolase, C-terminal domain CJO93_RS15165 PF00108 Thiolase, N-terminal domain CJO93_RS15175 PF02770 Acyl-CoA dehydrogenase, middle domain CJO93_RS15175 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJO93_RS15175 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJO93_RS15190 PF13419 Haloacid dehalogenase-like hydrolase CJO93_RS15200 PF01039 Carboxyl transferase domain CJO93_RS15210 PF00378 Enoyl-CoA hydratase/isomerase CJO93_RS15215 PF04055 Radical SAM superfamily CJO93_RS15215 PF06968 Biotin and Thiamin Synthesis associated domain CJO93_RS15225 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CJO93_RS15225 PF18140 Propionyl-coenzyme A carboxylase BT domain CJO93_RS15225 PF00364 Biotin-requiring enzyme CJO93_RS15225 PF00289 Biotin carboxylase, N-terminal domain CJO93_RS15225 PF02785 Biotin carboxylase C-terminal domain CJO93_RS15240 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CJO93_RS15245 PF00682 HMGL-like CJO93_RS15270 PF00561 alpha/beta hydrolase fold CJO93_RS15285 PF02567 Phenazine biosynthesis-like protein CJO93_RS15295 PF06594 Haemolysin-type calcium binding protein related domain CJO93_RS15295 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CJO93_RS15310 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CJO93_RS15310 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CJO93_RS15315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS15315 PF03466 LysR substrate binding domain CJO93_RS15335 PF07969 Amidohydrolase family CJO93_RS15350 PF01642 Methylmalonyl-CoA mutase CJO93_RS15350 PF02310 B12 binding domain CJO93_RS15380 PF13737 Transposase DDE domain CJO93_RS15395 PF06772 Bacterial low temperature requirement A protein (LtrA) CJO93_RS15405 PF00155 Aminotransferase class I and II CJO93_RS15415 PF01137 RNA 3'-terminal phosphate cyclase CJO93_RS15415 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain CJO93_RS15420 PF10127 RNA repair pathway DNA polymerase beta family CJO93_RS15425 PF01139 tRNA-splicing ligase RtcB CJO93_RS15435 PF00158 Sigma-54 interaction domain CJO93_RS15435 PF06956 Regulator of RNA terminal phosphate cyclase CJO93_RS15450 PF00708 Acylphosphatase CJO93_RS15465 PF07690 Major Facilitator Superfamily CJO93_RS15475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS15475 PF03466 LysR substrate binding domain CJO93_RS15480 PF00117 Glutamine amidotransferase class-I CJO93_RS15480 PF00958 GMP synthase C terminal domain CJO93_RS15480 PF02540 NAD synthase CJO93_RS15495 PF01638 HxlR-like helix-turn-helix CJO93_RS15550 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CJO93_RS15550 PF10996 Beta-Casp domain CJO93_RS15550 PF00753 Metallo-beta-lactamase superfamily CJO93_RS15555 PF00011 Hsp20/alpha crystallin family CJO93_RS15570 PF01292 Prokaryotic cytochrome b561 CJO93_RS15580 PF00034 Cytochrome c CJO93_RS15590 PF08471 Class II vitamin B12-dependent ribonucleotide reductase CJO93_RS15590 PF02867 Ribonucleotide reductase, barrel domain CJO93_RS15605 PF00196 Bacterial regulatory proteins, luxR family CJO93_RS15605 PF00072 Response regulator receiver domain CJO93_RS15610 PF07730 Histidine kinase CJO93_RS15610 PF05231 MASE1 CJO93_RS15610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS15615 PF13545 Crp-like helix-turn-helix domain CJO93_RS15615 PF00027 Cyclic nucleotide-binding domain CJO93_RS15645 PF00582 Universal stress protein family CJO93_RS15650 PF05598 Transposase domain (DUF772) CJO93_RS15650 PF01609 Transposase DDE domain CJO93_RS15655 PF00571 CBS domain CJO93_RS15675 PF00582 Universal stress protein family CJO93_RS15685 PF01380 SIS domain CJO93_RS15690 PF00132 Bacterial transferase hexapeptide (six repeats) CJO93_RS15690 PF14602 Hexapeptide repeat of succinyl-transferase CJO93_RS15690 PF12804 MobA-like NTP transferase domain CJO93_RS15700 PF01171 PP-loop family CJO93_RS15705 PF08546 Ketopantoate reductase PanE/ApbA C terminal CJO93_RS15705 PF02558 Ketopantoate reductase PanE/ApbA CJO93_RS15710 PF01040 UbiA prenyltransferase family CJO93_RS15715 PF01565 FAD binding domain CJO93_RS15715 PF04030 D-arabinono-1,4-lactone oxidase CJO93_RS15720 PF00106 short chain dehydrogenase CJO93_RS15730 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family CJO93_RS15735 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO93_RS15735 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CJO93_RS15755 PF00005 ABC transporter CJO93_RS15770 PF00171 Aldehyde dehydrogenase family CJO93_RS15775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS15775 PF03466 LysR substrate binding domain CJO93_RS15780 PF00202 Aminotransferase class-III CJO93_RS15785 PF00491 Arginase family CJO93_RS15795 PF00106 short chain dehydrogenase CJO93_RS15805 PF07690 Major Facilitator Superfamily CJO93_RS15820 PF00892 EamA-like transporter family CJO93_RS15825 PF00881 Nitroreductase family CJO93_RS15845 PF02698 DUF218 domain CJO93_RS15855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS15855 PF03466 LysR substrate binding domain CJO93_RS15865 PF01118 Semialdehyde dehydrogenase, NAD binding domain CJO93_RS15870 PF05360 yiaA/B two helix domain CJO93_RS15875 PF03372 Endonuclease/Exonuclease/phosphatase family CJO93_RS15880 PF00156 Phosphoribosyl transferase domain CJO93_RS15885 PF03976 Polyphosphate kinase 2 (PPK2) CJO93_RS15890 PF01678 Diaminopimelate epimerase CJO93_RS15895 PF03279 Bacterial lipid A biosynthesis acyltransferase CJO93_RS15905 PF02773 S-adenosylmethionine synthetase, C-terminal domain CJO93_RS15905 PF02772 S-adenosylmethionine synthetase, central domain CJO93_RS15905 PF00438 S-adenosylmethionine synthetase, N-terminal domain CJO93_RS15925 PF00571 CBS domain CJO93_RS15935 PF01037 Lrp/AsnC ligand binding domain CJO93_RS15955 PF02371 Transposase IS116/IS110/IS902 family CJO93_RS15955 PF01548 Transposase CJO93_RS15970 PF00732 GMC oxidoreductase CJO93_RS15970 PF05199 GMC oxidoreductase CJO93_RS15975 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJO93_RS15980 PF02770 Acyl-CoA dehydrogenase, middle domain CJO93_RS15980 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJO93_RS15980 PF18158 Adaptive response protein AidB N-terminal domain CJO93_RS16015 PF03060 Nitronate monooxygenase CJO93_RS16020 PF13667 ThiC-associated domain CJO93_RS16020 PF01964 Radical SAM ThiC family CJO93_RS16025 PF01266 FAD dependent oxidoreductase CJO93_RS16035 PF05690 Thiazole biosynthesis protein ThiG CJO93_RS16040 PF02581 Thiamine monophosphate synthase CJO93_RS16045 PF06983 3-demethylubiquinone-9 3-methyltransferase CJO93_RS16055 PF13737 Transposase DDE domain CJO93_RS16070 PF08543 Phosphomethylpyrimidine kinase CJO93_RS16080 PF00245 Alkaline phosphatase CJO93_RS16085 PF00245 Alkaline phosphatase CJO93_RS16100 PF05221 S-adenosyl-L-homocysteine hydrolase CJO93_RS16100 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CJO93_RS16105 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV CJO93_RS16110 PF02219 Methylenetetrahydrofolate reductase CJO93_RS16120 PF01812 5-formyltetrahydrofolate cyclo-ligase family CJO93_RS16125 PF01464 Transglycosylase SLT domain CJO93_RS16125 PF14718 Soluble lytic murein transglycosylase L domain CJO93_RS16135 PF13417 Glutathione S-transferase, N-terminal domain CJO93_RS16135 PF00043 Glutathione S-transferase, C-terminal domain CJO93_RS16140 PF01743 Poly A polymerase head domain CJO93_RS16140 PF12627 Probable RNA and SrmB- binding site of polymerase A CJO93_RS16140 PF01966 HD domain CJO93_RS16145 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJO93_RS16150 PF05853 beta-keto acid cleavage enzyme CJO93_RS16155 PF00202 Aminotransferase class-III CJO93_RS16185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS16185 PF00989 PAS fold CJO93_RS16185 PF00672 HAMP domain CJO93_RS16185 PF00512 His Kinase A (phospho-acceptor) domain CJO93_RS16195 PF01029 NusB family CJO93_RS16195 PF01189 16S rRNA methyltransferase RsmB/F CJO93_RS16200 PF01435 Peptidase family M48 CJO93_RS16210 PF02911 Formyl transferase, C-terminal domain CJO93_RS16210 PF00551 Formyl transferase CJO93_RS16220 PF01327 Polypeptide deformylase CJO93_RS16225 PF01476 LysM domain CJO93_RS16230 PF02481 DNA recombination-mediator protein A CJO93_RS16230 PF17782 DprA winged helix domain CJO93_RS16240 PF01751 Toprim domain CJO93_RS16240 PF01131 DNA topoisomerase CJO93_RS16245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS16245 PF03466 LysR substrate binding domain CJO93_RS16250 PF00501 AMP-binding enzyme CJO93_RS16250 PF13193 AMP-binding enzyme C-terminal domain CJO93_RS16255 PF01098 Cell cycle protein CJO93_RS16260 PF03717 Penicillin-binding Protein dimerisation domain CJO93_RS16260 PF00905 Penicillin binding protein transpeptidase domain CJO93_RS16270 PF04085 rod shape-determining protein MreC CJO93_RS16280 PF02686 Glu-tRNAGln amidotransferase C subunit CJO93_RS16285 PF01425 Amidase CJO93_RS16300 PF02637 GatB domain CJO93_RS16300 PF02934 GatB/GatE catalytic domain CJO93_RS16310 PF02899 Phage integrase, N-terminal SAM-like domain CJO93_RS16310 PF00589 Phage integrase family CJO93_RS16315 PF10672 S-adenosylmethionine-dependent methyltransferase CJO93_RS16315 PF17785 PUA-like domain CJO93_RS16320 PF08031 Berberine and berberine like CJO93_RS16320 PF01565 FAD binding domain CJO93_RS16335 PF07683 Cobalamin synthesis protein cobW C-terminal domain CJO93_RS16335 PF02492 CobW/HypB/UreG, nucleotide-binding domain CJO93_RS16340 PF01258 Prokaryotic dksA/traR C4-type zinc finger CJO93_RS16345 PF07683 Cobalamin synthesis protein cobW C-terminal domain CJO93_RS16345 PF02492 CobW/HypB/UreG, nucleotide-binding domain CJO93_RS16350 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJO93_RS16355 PF00227 Proteasome subunit CJO93_RS16360 PF10431 C-terminal, D2-small domain, of ClpB protein CJO93_RS16360 PF00004 ATPase family associated with various cellular activities (AAA) CJO93_RS16360 PF07724 AAA domain (Cdc48 subfamily) CJO93_RS16370 PF00072 Response regulator receiver domain CJO93_RS16375 PF00512 His Kinase A (phospho-acceptor) domain CJO93_RS16375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS16400 PF04542 Sigma-70 region 2 CJO93_RS16400 PF08281 Sigma-70, region 4 CJO93_RS16405 PF00696 Amino acid kinase family CJO93_RS16415 PF00440 Bacterial regulatory proteins, tetR family CJO93_RS16420 PF01609 Transposase DDE domain CJO93_RS16420 PF13006 Insertion element 4 transposase N-terminal CJO93_RS16425 PF00392 Bacterial regulatory proteins, gntR family CJO93_RS16425 PF00155 Aminotransferase class I and II CJO93_RS16430 PF00202 Aminotransferase class-III CJO93_RS16435 PF00171 Aldehyde dehydrogenase family CJO93_RS16440 PF00561 alpha/beta hydrolase fold CJO93_RS16450 PF01609 Transposase DDE domain CJO93_RS16450 PF13006 Insertion element 4 transposase N-terminal CJO93_RS16465 PF04328 Selenoprotein, putative CJO93_RS16470 PF13722 5TM C-terminal transporter carbon starvation CstA CJO93_RS16470 PF02554 Carbon starvation protein CstA CJO93_RS16475 PF07730 Histidine kinase CJO93_RS16475 PF17200 Single Cache domain 2 CJO93_RS16480 PF00072 Response regulator receiver domain CJO93_RS16480 PF00196 Bacterial regulatory proteins, luxR family CJO93_RS16485 PF01261 Xylose isomerase-like TIM barrel CJO93_RS16495 PF00072 Response regulator receiver domain CJO93_RS16495 PF00486 Transcriptional regulatory protein, C terminal CJO93_RS16500 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain CJO93_RS16500 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain CJO93_RS16510 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CJO93_RS16510 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CJO93_RS16515 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CJO93_RS16520 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO93_RS16520 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CJO93_RS16530 PF08361 MAATS-type transcriptional repressor, C-terminal region CJO93_RS16530 PF00440 Bacterial regulatory proteins, tetR family CJO93_RS16535 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJO93_RS16535 PF00529 HlyD membrane-fusion protein of T1SS CJO93_RS16540 PF00873 AcrB/AcrD/AcrF family CJO93_RS16545 PF02321 Outer membrane efflux protein CJO93_RS16550 PF01165 Ribosomal protein S21 CJO93_RS16565 PF10396 GTP-binding protein TrmE N-terminus CJO93_RS16565 PF12631 MnmE helical domain CJO93_RS16565 PF01926 50S ribosome-binding GTPase CJO93_RS16570 PF02096 60Kd inner membrane protein CJO93_RS16570 PF14849 YidC periplasmic domain CJO93_RS16575 PF01809 Putative membrane protein insertion efficiency factor CJO93_RS16580 PF00825 Ribonuclease P CJO93_RS16585 PF00468 Ribosomal protein L34 CJO93_RS16595 PF00313 'Cold-shock' DNA-binding domain CJO93_RS16600 PF13614 AAA domain CJO93_RS16605 PF02195 ParB-like nuclease domain CJO93_RS16605 PF17762 HTH domain found in ParB protein CJO93_RS16615 PF00483 Nucleotidyl transferase CJO93_RS16620 PF00083 Sugar (and other) transporter CJO93_RS16625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS16625 PF00512 His Kinase A (phospho-acceptor) domain CJO93_RS16625 PF02743 Cache domain CJO93_RS16630 PF02954 Bacterial regulatory protein, Fis family CJO93_RS16630 PF00072 Response regulator receiver domain CJO93_RS16630 PF00158 Sigma-54 interaction domain CJO93_RS16635 PF10086 YhfC intramembrane metalloprotease CJO93_RS16650 PF13737 Transposase DDE domain CJO93_RS16670 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CJO93_RS16670 PF01048 Phosphorylase superfamily CJO93_RS16700 PF01548 Transposase CJO93_RS16700 PF02371 Transposase IS116/IS110/IS902 family CJO93_RS16715 PF05598 Transposase domain (DUF772) CJO93_RS16715 PF01609 Transposase DDE domain CJO93_RS16730 PF03061 Thioesterase superfamily CJO93_RS16745 PF13737 Transposase DDE domain CJO93_RS16760 PF00150 Cellulase (glycosyl hydrolase family 5) CJO93_RS16770 PF01554 MatE CJO93_RS16775 PF03621 MbtH-like protein CJO93_RS16780 PF00975 Thioesterase domain CJO93_RS16780 PF00501 AMP-binding enzyme CJO93_RS16780 PF00550 Phosphopantetheine attachment site CJO93_RS16780 PF00668 Condensation domain CJO93_RS16780 PF13193 AMP-binding enzyme C-terminal domain CJO93_RS16800 PF13737 Transposase DDE domain CJO93_RS16820 PF05598 Transposase domain (DUF772) CJO93_RS16820 PF01609 Transposase DDE domain CJO93_RS16835 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CJO93_RS16835 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CJO93_RS16840 PF00561 alpha/beta hydrolase fold CJO93_RS16850 PF02600 Disulfide bond formation protein DsbB CJO93_RS16855 PF00975 Thioesterase domain CJO93_RS16860 PF00550 Phosphopantetheine attachment site CJO93_RS16860 PF02801 Beta-ketoacyl synthase, C-terminal domain CJO93_RS16860 PF00698 Acyl transferase domain CJO93_RS16860 PF00668 Condensation domain CJO93_RS16860 PF00109 Beta-ketoacyl synthase, N-terminal domain CJO93_RS16860 PF16197 Ketoacyl-synthetase C-terminal extension CJO93_RS16865 PF00550 Phosphopantetheine attachment site CJO93_RS16865 PF00668 Condensation domain CJO93_RS16865 PF13193 AMP-binding enzyme C-terminal domain CJO93_RS16865 PF00501 AMP-binding enzyme CJO93_RS16870 PF14765 Polyketide synthase dehydratase CJO93_RS16870 PF00550 Phosphopantetheine attachment site CJO93_RS16870 PF08659 KR domain CJO93_RS16870 PF00698 Acyl transferase domain CJO93_RS16870 PF02801 Beta-ketoacyl synthase, C-terminal domain CJO93_RS16870 PF16197 Ketoacyl-synthetase C-terminal extension CJO93_RS16870 PF00109 Beta-ketoacyl synthase, N-terminal domain CJO93_RS16885 PF00501 AMP-binding enzyme CJO93_RS16895 PF00202 Aminotransferase class-III CJO93_RS16905 PF13737 Transposase DDE domain CJO93_RS16925 PF00072 Response regulator receiver domain CJO93_RS16925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS16930 PF03466 LysR substrate binding domain CJO93_RS16930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS16935 PF00355 Rieske [2Fe-2S] domain CJO93_RS16940 PF00111 2Fe-2S iron-sulfur cluster binding domain CJO93_RS16940 PF00175 Oxidoreductase NAD-binding domain CJO93_RS16945 PF01047 MarR family CJO93_RS16950 PF00378 Enoyl-CoA hydratase/isomerase CJO93_RS16955 PF00171 Aldehyde dehydrogenase family CJO93_RS16960 PF00550 Phosphopantetheine attachment site CJO93_RS16960 PF00501 AMP-binding enzyme CJO93_RS16960 PF07993 Male sterility protein CJO93_RS16965 PF00158 Sigma-54 interaction domain CJO93_RS16965 PF02830 V4R domain CJO93_RS16965 PF06505 Activator of aromatic catabolism CJO93_RS16965 PF02954 Bacterial regulatory protein, Fis family CJO93_RS16970 PF00171 Aldehyde dehydrogenase family CJO93_RS16985 PF07859 alpha/beta hydrolase fold CJO93_RS16990 PF04909 Amidohydrolase CJO93_RS16995 PF07690 Major Facilitator Superfamily CJO93_RS17000 PF00128 Alpha amylase, catalytic domain CJO93_RS17005 PF02446 4-alpha-glucanotransferase CJO93_RS17010 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CJO93_RS17010 PF11941 Domain of unknown function (DUF3459) CJO93_RS17010 PF00128 Alpha amylase, catalytic domain CJO93_RS17015 PF00128 Alpha amylase, catalytic domain CJO93_RS17015 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CJO93_RS17025 PF00128 Alpha amylase, catalytic domain CJO93_RS17025 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CJO93_RS17025 PF02806 Alpha amylase, C-terminal all-beta domain CJO93_RS17030 PF00128 Alpha amylase, catalytic domain CJO93_RS17030 PF16657 Maltogenic Amylase, C-terminal domain CJO93_RS17035 PF00128 Alpha amylase, catalytic domain CJO93_RS17035 PF11896 Domain of unknown function (DUF3416) CJO93_RS17040 PF08323 Starch synthase catalytic domain CJO93_RS17040 PF00534 Glycosyl transferases group 1 CJO93_RS17045 PF05171 Haemin-degrading HemS.ChuX domain CJO93_RS17050 PF00593 TonB dependent receptor CJO93_RS17050 PF07715 TonB-dependent Receptor Plug Domain CJO93_RS17055 PF10417 C-terminal domain of 1-Cys peroxiredoxin CJO93_RS17055 PF00578 AhpC/TSA family CJO93_RS17060 PF13192 Thioredoxin domain CJO93_RS17060 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO93_RS17065 PF01475 Ferric uptake regulator family CJO93_RS17085 PF07670 Nucleoside recognition CJO93_RS17085 PF17910 FeoB cytosolic helical domain CJO93_RS17085 PF07664 Ferrous iron transport protein B C terminus CJO93_RS17085 PF04023 FeoA domain CJO93_RS17085 PF02421 Ferrous iron transport protein B CJO93_RS17100 PF03707 Bacterial signalling protein N terminal repeat CJO93_RS17100 PF00990 Diguanylate cyclase, GGDEF domain CJO93_RS17100 PF00563 EAL domain CJO93_RS17105 PF08447 PAS fold CJO93_RS17105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO93_RS17125 PF01470 Pyroglutamyl peptidase CJO93_RS17140 PF04349 Periplasmic glucan biosynthesis protein, MdoG CJO93_RS17150 PF00583 Acetyltransferase (GNAT) family CJO93_RS17190 PF05598 Transposase domain (DUF772) CJO93_RS17190 PF01609 Transposase DDE domain CJO93_RS17195 PF01546 Peptidase family M20/M25/M40 CJO93_RS17195 PF07687 Peptidase dimerisation domain CJO93_RS17215 PF00571 CBS domain CJO93_RS17215 PF00291 Pyridoxal-phosphate dependent enzyme CJO93_RS17220 PF01204 Trehalase CJO93_RS17235 PF00990 Diguanylate cyclase, GGDEF domain CJO93_RS17235 PF07694 5TMR of 5TMR-LYT CJO93_RS17240 PF13520 Amino acid permease CJO93_RS17245 PF01554 MatE CJO93_RS17260 PF00196 Bacterial regulatory proteins, luxR family CJO93_RS17270 PF14883 Hypothetical glycosyl hydrolase family 13 CJO93_RS17270 PF01522 Polysaccharide deacetylase CJO93_RS17275 PF00535 Glycosyl transferase family 2 CJO93_RS17290 PF13533 Biotin-lipoyl like CJO93_RS17295 PF00664 ABC transporter transmembrane region CJO93_RS17295 PF03412 Peptidase C39 family CJO93_RS17295 PF00005 ABC transporter CJO93_RS17330 PF02203 Tar ligand binding domain homologue CJO93_RS17330 PF00672 HAMP domain CJO93_RS17330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO93_RS17350 PF03060 Nitronate monooxygenase CJO93_RS17355 PF03466 LysR substrate binding domain CJO93_RS17355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS17360 PF03551 Transcriptional regulator PadR-like family CJO93_RS17360 PF10400 Virulence activator alpha C-term CJO93_RS17370 PF02321 Outer membrane efflux protein CJO93_RS17375 PF00873 AcrB/AcrD/AcrF family CJO93_RS17380 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJO93_RS17380 PF00529 HlyD membrane-fusion protein of T1SS CJO93_RS17385 PF00072 Response regulator receiver domain CJO93_RS17385 PF00486 Transcriptional regulatory protein, C terminal CJO93_RS17390 PF00512 His Kinase A (phospho-acceptor) domain CJO93_RS17390 PF00672 HAMP domain CJO93_RS17390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS17395 PF03060 Nitronate monooxygenase CJO93_RS17405 PF00582 Universal stress protein family CJO93_RS17425 PF13737 Transposase DDE domain CJO93_RS17435 PF00403 Heavy-metal-associated domain CJO93_RS17440 PF13411 MerR HTH family regulatory protein CJO93_RS17450 PF00682 HMGL-like CJO93_RS17450 PF08502 LeuA allosteric (dimerisation) domain CJO93_RS17465 PF01799 [2Fe-2S] binding domain CJO93_RS17465 PF00111 2Fe-2S iron-sulfur cluster binding domain CJO93_RS17470 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CJO93_RS17475 PF02566 OsmC-like protein CJO93_RS17490 PF00180 Isocitrate/isopropylmalate dehydrogenase CJO93_RS17495 PF00330 Aconitase family (aconitate hydratase) CJO93_RS17495 PF00694 Aconitase C-terminal domain CJO93_RS17510 PF05433 Glycine zipper 2TM domain CJO93_RS17515 PF00563 EAL domain CJO93_RS17515 PF00990 Diguanylate cyclase, GGDEF domain CJO93_RS17515 PF03707 Bacterial signalling protein N terminal repeat CJO93_RS17525 PF00816 H-NS histone family CJO93_RS17530 PF07702 UTRA domain CJO93_RS17530 PF00392 Bacterial regulatory proteins, gntR family CJO93_RS17535 PF13609 Gram-negative porin CJO93_RS17550 PF05598 Transposase domain (DUF772) CJO93_RS17550 PF01609 Transposase DDE domain CJO93_RS17575 PF00460 Flagella basal body rod protein CJO93_RS17580 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJO93_RS17580 PF00460 Flagella basal body rod protein CJO93_RS17585 PF03963 Flagellar hook capping protein - N-terminal region CJO93_RS17585 PF13860 FlgD Ig-like domain CJO93_RS17585 PF13861 FlgD Tudor-like domain CJO93_RS17590 PF07559 Flagellar basal body protein FlaE CJO93_RS17590 PF00460 Flagella basal body rod protein CJO93_RS17590 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJO93_RS17595 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJO93_RS17595 PF00460 Flagella basal body rod protein CJO93_RS17600 PF00460 Flagella basal body rod protein CJO93_RS17600 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJO93_RS17605 PF02107 Flagellar L-ring protein CJO93_RS17610 PF02119 Flagellar P-ring protein CJO93_RS17615 PF10135 Rod binding protein CJO93_RS17615 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CJO93_RS17620 PF00460 Flagella basal body rod protein CJO93_RS17620 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJO93_RS17625 PF00669 Bacterial flagellin N-terminal helical region CJO93_RS17635 PF04820 Tryptophan halogenase CJO93_RS17640 PF08241 Methyltransferase domain CJO93_RS17650 PF02801 Beta-ketoacyl synthase, C-terminal domain CJO93_RS17650 PF00109 Beta-ketoacyl synthase, N-terminal domain CJO93_RS17655 PF02801 Beta-ketoacyl synthase, C-terminal domain CJO93_RS17655 PF00109 Beta-ketoacyl synthase, N-terminal domain CJO93_RS17670 PF02801 Beta-ketoacyl synthase, C-terminal domain CJO93_RS17670 PF00109 Beta-ketoacyl synthase, N-terminal domain CJO93_RS17690 PF00221 Aromatic amino acid lyase CJO93_RS17700 PF00501 AMP-binding enzyme CJO93_RS17700 PF13193 AMP-binding enzyme C-terminal domain CJO93_RS17710 PF00550 Phosphopantetheine attachment site CJO93_RS17720 PF01553 Acyltransferase CJO93_RS17730 PF01311 Bacterial export proteins, family 1 CJO93_RS17735 PF01313 Bacterial export proteins, family 3 CJO93_RS17740 PF00813 FliP family CJO93_RS17745 PF04347 Flagellar biosynthesis protein, FliO CJO93_RS17750 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CJO93_RS17755 PF02154 Flagellar motor switch protein FliM CJO93_RS17755 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CJO93_RS17765 PF00990 Diguanylate cyclase, GGDEF domain CJO93_RS17765 PF00563 EAL domain CJO93_RS17765 PF03707 Bacterial signalling protein N terminal repeat CJO93_RS17770 PF00196 Bacterial regulatory proteins, luxR family CJO93_RS17770 PF00072 Response regulator receiver domain CJO93_RS17775 PF00700 Bacterial flagellin C-terminal helical region CJO93_RS17775 PF00669 Bacterial flagellin N-terminal helical region CJO93_RS17785 PF02465 Flagellar hook-associated protein 2 N-terminus CJO93_RS17785 PF07195 Flagellar hook-associated protein 2 C-terminus CJO93_RS17785 PF07196 Flagellin hook IN motif CJO93_RS17790 PF02561 Flagellar protein FliS CJO93_RS17800 PF01047 MarR family CJO93_RS17805 PF00535 Glycosyl transferase family 2 CJO93_RS17815 PF02049 Flagellar hook-basal body complex protein FliE CJO93_RS17820 PF08345 Flagellar M-ring protein C-terminal CJO93_RS17820 PF01514 Secretory protein of YscJ/FliF family CJO93_RS17825 PF14842 FliG N-terminal domain CJO93_RS17825 PF14841 FliG middle domain CJO93_RS17825 PF01706 FliG C-terminal domain CJO93_RS17830 PF02108 Flagellar assembly protein FliH CJO93_RS17835 PF18269 T3SS EscN ATPase C-terminal domain CJO93_RS17835 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJO93_RS17860 PF00990 Diguanylate cyclase, GGDEF domain CJO93_RS17860 PF01590 GAF domain CJO93_RS17860 PF00563 EAL domain CJO93_RS17860 PF00360 Phytochrome region CJO93_RS17870 PF00563 EAL domain CJO93_RS17870 PF01590 GAF domain CJO93_RS17870 PF00360 Phytochrome region CJO93_RS17870 PF00990 Diguanylate cyclase, GGDEF domain CJO93_RS17885 PF13087 AAA domain CJO93_RS17885 PF13086 AAA domain CJO93_RS17885 PF13195 Protein of unknown function (DUF4011) CJO93_RS17885 PF13086 AAA domain CJO93_RS17885 PF13087 AAA domain CJO93_RS17885 PF13195 Protein of unknown function (DUF4011) CJO93_RS17890 PF01609 Transposase DDE domain CJO93_RS17890 PF13006 Insertion element 4 transposase N-terminal CJO93_RS17910 PF00501 AMP-binding enzyme CJO93_RS17970 PF00593 TonB dependent receptor CJO93_RS17970 PF07715 TonB-dependent Receptor Plug Domain CJO93_RS17980 PF00593 TonB dependent receptor CJO93_RS17980 PF07715 TonB-dependent Receptor Plug Domain CJO93_RS17985 PF00291 Pyridoxal-phosphate dependent enzyme CJO93_RS17990 PF02423 Ornithine cyclodeaminase/mu-crystallin family CJO93_RS17995 PF04183 IucA / IucC family CJO93_RS17995 PF06276 Ferric iron reductase FhuF-like transporter CJO93_RS18000 PF07690 Major Facilitator Superfamily CJO93_RS18005 PF04183 IucA / IucC family CJO93_RS18005 PF06276 Ferric iron reductase FhuF-like transporter CJO93_RS18010 PF06276 Ferric iron reductase FhuF-like transporter CJO93_RS18010 PF04183 IucA / IucC family CJO93_RS18015 PF03328 HpcH/HpaI aldolase/citrate lyase family CJO93_RS18020 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CJO93_RS18020 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CJO93_RS18025 PF00156 Phosphoribosyl transferase domain CJO93_RS18025 PF01738 Dienelactone hydrolase family CJO93_RS18040 PF13533 Biotin-lipoyl like CJO93_RS18050 PF02321 Outer membrane efflux protein CJO93_RS18095 PF01370 NAD dependent epimerase/dehydratase family CJO93_RS18100 PF03466 LysR substrate binding domain CJO93_RS18100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS18105 PF00005 ABC transporter CJO93_RS18110 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS18115 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJO93_RS18120 PF01037 Lrp/AsnC ligand binding domain CJO93_RS18125 PF02423 Ornithine cyclodeaminase/mu-crystallin family CJO93_RS18135 PF13419 Haloacid dehalogenase-like hydrolase CJO93_RS18150 PF07687 Peptidase dimerisation domain CJO93_RS18150 PF01546 Peptidase family M20/M25/M40 CJO93_RS18155 PF00512 His Kinase A (phospho-acceptor) domain CJO93_RS18155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS18155 PF00672 HAMP domain CJO93_RS18160 PF00072 Response regulator receiver domain CJO93_RS18160 PF00486 Transcriptional regulatory protein, C terminal CJO93_RS18170 PF02321 Outer membrane efflux protein CJO93_RS18175 PF00529 HlyD membrane-fusion protein of T1SS CJO93_RS18175 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJO93_RS18180 PF00873 AcrB/AcrD/AcrF family CJO93_RS18185 PF01230 HIT domain CJO93_RS18190 PF03616 Sodium/glutamate symporter CJO93_RS18220 PF13737 Transposase DDE domain CJO93_RS18240 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CJO93_RS18240 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CJO93_RS18250 PF02203 Tar ligand binding domain homologue CJO93_RS18250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO93_RS18250 PF00672 HAMP domain CJO93_RS18265 PF02350 UDP-N-acetylglucosamine 2-epimerase CJO93_RS18285 PF00924 Mechanosensitive ion channel CJO93_RS18305 PF02371 Transposase IS116/IS110/IS902 family CJO93_RS18305 PF01548 Transposase CJO93_RS18325 PF01609 Transposase DDE domain CJO93_RS18325 PF05598 Transposase domain (DUF772) CJO93_RS18345 PF01609 Transposase DDE domain CJO93_RS18345 PF05598 Transposase domain (DUF772) CJO93_RS18350 PF00041 Fibronectin type III domain CJO93_RS18350 PF01341 Glycosyl hydrolases family 6 CJO93_RS18350 PF00553 Cellulose binding domain CJO93_RS18365 PF13737 Transposase DDE domain CJO93_RS18380 PF00106 short chain dehydrogenase CJO93_RS18405 PF01548 Transposase CJO93_RS18405 PF02371 Transposase IS116/IS110/IS902 family CJO93_RS18415 PF13296 Putative type VI secretion system Rhs element Vgr CJO93_RS18415 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) CJO93_RS18415 PF04717 Type VI secretion system, phage-baseplate injector CJO93_RS18420 PF05230 MASE2 domain CJO93_RS18420 PF00990 Diguanylate cyclase, GGDEF domain CJO93_RS18425 PF01566 Natural resistance-associated macrophage protein CJO93_RS18430 PF00012 Hsp70 protein CJO93_RS18440 PF00072 Response regulator receiver domain CJO93_RS18440 PF00486 Transcriptional regulatory protein, C terminal CJO93_RS18445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS18445 PF00512 His Kinase A (phospho-acceptor) domain CJO93_RS18450 PF13460 NAD(P)H-binding CJO93_RS18465 PF02321 Outer membrane efflux protein CJO93_RS18470 PF13533 Biotin-lipoyl like CJO93_RS18475 PF00873 AcrB/AcrD/AcrF family CJO93_RS18485 PF11838 ERAP1-like C-terminal domain CJO93_RS18485 PF01433 Peptidase family M1 domain CJO93_RS18495 PF00149 Calcineurin-like phosphoesterase CJO93_RS18500 PF03466 LysR substrate binding domain CJO93_RS18500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS18505 PF07690 Major Facilitator Superfamily CJO93_RS18530 PF13737 Transposase DDE domain CJO93_RS18535 PF01609 Transposase DDE domain CJO93_RS18535 PF05598 Transposase domain (DUF772) CJO93_RS18540 PF01609 Transposase DDE domain CJO93_RS18540 PF05598 Transposase domain (DUF772) CJO93_RS18545 PF01609 Transposase DDE domain CJO93_RS18545 PF05598 Transposase domain (DUF772) CJO93_RS18555 PF08479 POTRA domain, ShlB-type CJO93_RS18555 PF17287 POTRA domain CJO93_RS18555 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CJO93_RS18560 PF01979 Amidohydrolase family CJO93_RS18565 PF03824 High-affinity nickel-transport protein CJO93_RS18570 PF02583 Metal-sensitive transcriptional repressor CJO93_RS18575 PF09828 Chromate resistance exported protein CJO93_RS18580 PF02417 Chromate transporter CJO93_RS18585 PF09828 Chromate resistance exported protein CJO93_RS18605 PF00578 AhpC/TSA family CJO93_RS18685 PF13737 Transposase DDE domain CJO93_RS18695 PF00753 Metallo-beta-lactamase superfamily CJO93_RS18710 PF00072 Response regulator receiver domain CJO93_RS18710 PF01584 CheW-like domain CJO93_RS18735 PF05922 Peptidase inhibitor I9 CJO93_RS18735 PF00082 Subtilase family CJO93_RS18740 PF13737 Transposase DDE domain CJO93_RS18745 PF05138 Phenylacetic acid catabolic protein CJO93_RS18750 PF06243 Phenylacetic acid degradation B CJO93_RS18755 PF05138 Phenylacetic acid catabolic protein CJO93_RS18760 PF01883 Iron-sulfur cluster assembly protein CJO93_RS18765 PF00970 Oxidoreductase FAD-binding domain CJO93_RS18765 PF00111 2Fe-2S iron-sulfur cluster binding domain CJO93_RS18765 PF00175 Oxidoreductase NAD-binding domain CJO93_RS18795 PF00881 Nitroreductase family CJO93_RS18800 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CJO93_RS18800 PF07685 CobB/CobQ-like glutamine amidotransferase domain CJO93_RS18805 PF12557 Cob(I)alamin adenosyltransferase N terminal CJO93_RS18805 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CJO93_RS18810 PF07683 Cobalamin synthesis protein cobW C-terminal domain CJO93_RS18810 PF02492 CobW/HypB/UreG, nucleotide-binding domain CJO93_RS18815 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJO93_RS18815 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CJO93_RS18820 PF01890 Cobalamin synthesis G C-terminus CJO93_RS18825 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJO93_RS18830 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJO93_RS18835 PF01888 CbiD CJO93_RS18840 PF01903 CbiX CJO93_RS18845 PF14824 Sirohaem biosynthesis protein central CJO93_RS18845 PF10414 Sirohaem synthase dimerisation region CJO93_RS18845 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJO93_RS18855 PF13519 von Willebrand factor type A domain CJO93_RS18855 PF07728 AAA domain (dynein-related subfamily) CJO93_RS18855 PF17863 AAA lid domain CJO93_RS18860 PF02514 CobN/Magnesium Chelatase CJO93_RS18870 PF03824 High-affinity nickel-transport protein CJO93_RS18875 PF13737 Transposase DDE domain CJO93_RS18885 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CJO93_RS18890 PF01757 Acyltransferase family CJO93_RS18895 PF04542 Sigma-70 region 2 CJO93_RS18895 PF08281 Sigma-70, region 4 CJO93_RS18905 PF00005 ABC transporter CJO93_RS18905 PF00664 ABC transporter transmembrane region CJO93_RS18910 PF18456 Diiron non-heme beta-hydroxylase N-terminal domain CJO93_RS18910 PF12706 Beta-lactamase superfamily domain CJO93_RS18915 PF03621 MbtH-like protein CJO93_RS18920 PF00668 Condensation domain CJO93_RS18920 PF00975 Thioesterase domain CJO93_RS18920 PF13193 AMP-binding enzyme C-terminal domain CJO93_RS18920 PF00550 Phosphopantetheine attachment site CJO93_RS18920 PF00501 AMP-binding enzyme CJO93_RS18925 PF13193 AMP-binding enzyme C-terminal domain CJO93_RS18925 PF00975 Thioesterase domain CJO93_RS18925 PF00668 Condensation domain CJO93_RS18925 PF00550 Phosphopantetheine attachment site CJO93_RS18925 PF00501 AMP-binding enzyme CJO93_RS18970 PF00291 Pyridoxal-phosphate dependent enzyme CJO93_RS18975 PF00378 Enoyl-CoA hydratase/isomerase CJO93_RS18980 PF00378 Enoyl-CoA hydratase/isomerase CJO93_RS18985 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CJO93_RS18985 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CJO93_RS18990 PF00171 Aldehyde dehydrogenase family CJO93_RS18995 PF13193 AMP-binding enzyme C-terminal domain CJO93_RS18995 PF00501 AMP-binding enzyme CJO93_RS19000 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJO93_RS19000 PF02770 Acyl-CoA dehydrogenase, middle domain CJO93_RS19000 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJO93_RS19010 PF00672 HAMP domain CJO93_RS19010 PF00512 His Kinase A (phospho-acceptor) domain CJO93_RS19010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS19015 PF00072 Response regulator receiver domain CJO93_RS19015 PF00486 Transcriptional regulatory protein, C terminal CJO93_RS19020 PF07732 Multicopper oxidase CJO93_RS19020 PF07731 Multicopper oxidase CJO93_RS19020 PF00394 Multicopper oxidase CJO93_RS19025 PF05275 Copper resistance protein B precursor (CopB) CJO93_RS19030 PF04234 CopC domain CJO93_RS19035 PF05425 Copper resistance protein D CJO93_RS19040 PF13609 Gram-negative porin CJO93_RS19055 PF01047 MarR family CJO93_RS19070 PF00857 Isochorismatase family CJO93_RS19075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS19075 PF03466 LysR substrate binding domain CJO93_RS19080 PF07690 Major Facilitator Superfamily CJO93_RS19085 PF01047 MarR family CJO93_RS19090 PF01544 CorA-like Mg2+ transporter protein CJO93_RS19095 PF03352 Methyladenine glycosylase CJO93_RS19100 PF07690 Major Facilitator Superfamily CJO93_RS19110 PF02321 Outer membrane efflux protein CJO93_RS19120 PF00873 AcrB/AcrD/AcrF family CJO93_RS19125 PF00378 Enoyl-CoA hydratase/isomerase CJO93_RS19135 PF03783 Curli production assembly/transport component CsgG CJO93_RS19145 PF05643 Putative bacterial lipoprotein (DUF799) CJO93_RS19150 PF08267 Cobalamin-independent synthase, N-terminal domain CJO93_RS19150 PF01717 Cobalamin-independent synthase, Catalytic domain CJO93_RS19155 PF03466 LysR substrate binding domain CJO93_RS19155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS19160 PF01243 Pyridoxamine 5'-phosphate oxidase CJO93_RS19160 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CJO93_RS19165 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CJO93_RS19165 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CJO93_RS19170 PF00218 Indole-3-glycerol phosphate synthase CJO93_RS19180 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CJO93_RS19180 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO93_RS19185 PF01168 Alanine racemase, N-terminal domain CJO93_RS19205 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJO93_RS19205 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJO93_RS19205 PF02770 Acyl-CoA dehydrogenase, middle domain CJO93_RS19225 PF04209 homogentisate 1,2-dioxygenase CJO93_RS19230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS19230 PF03466 LysR substrate binding domain CJO93_RS19240 PF03301 Tryptophan 2,3-dioxygenase CJO93_RS19250 PF00266 Aminotransferase class-V CJO93_RS19255 PF00106 short chain dehydrogenase CJO93_RS19260 PF00155 Aminotransferase class I and II CJO93_RS19265 PF00472 RF-1 domain CJO93_RS19280 PF01494 FAD binding domain CJO93_RS19300 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJO93_RS19300 PF00005 ABC transporter CJO93_RS19305 PF00005 ABC transporter CJO93_RS19315 PF00067 Cytochrome P450 CJO93_RS19320 PF00892 EamA-like transporter family CJO93_RS19340 PF01063 Amino-transferase class IV CJO93_RS19355 PF03150 Di-haem cytochrome c peroxidase CJO93_RS19385 PF03447 Homoserine dehydrogenase, NAD binding domain CJO93_RS19385 PF01958 Domain of unknown function DUF108 CJO93_RS19405 PF13737 Transposase DDE domain CJO93_RS19410 PF00982 Glycosyltransferase family 20 CJO93_RS19440 PF06715 Gp5 C-terminal repeat (3 copies) CJO93_RS19440 PF04717 Type VI secretion system, phage-baseplate injector CJO93_RS19450 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE CJO93_RS19465 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 CJO93_RS19470 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath CJO93_RS19480 PF04965 Gene 25-like lysozyme CJO93_RS19485 PF05947 Type VI secretion system, TssF CJO93_RS19495 PF07724 AAA domain (Cdc48 subfamily) CJO93_RS19495 PF17871 AAA lid domain CJO93_RS19495 PF00004 ATPase family associated with various cellular activities (AAA) CJO93_RS19495 PF10431 C-terminal, D2-small domain, of ClpB protein CJO93_RS19500 PF04717 Type VI secretion system, phage-baseplate injector CJO93_RS19500 PF06715 Gp5 C-terminal repeat (3 copies) CJO93_RS19520 PF13737 Transposase DDE domain CJO93_RS19540 PF05598 Transposase domain (DUF772) CJO93_RS19540 PF01609 Transposase DDE domain CJO93_RS19560 PF02638 Glycosyl hydrolase-like 10 CJO93_RS19575 PF04972 BON domain CJO93_RS19575 PF00691 OmpA family CJO93_RS19585 PF06744 Type VI secretion protein IcmF C-terminal CJO93_RS19585 PF14331 ImcF-related N-terminal domain CJO93_RS19585 PF06761 Intracellular multiplication and human macrophage-killing CJO93_RS19660 PF00196 Bacterial regulatory proteins, luxR family CJO93_RS19660 PF03472 Autoinducer binding domain CJO93_RS19665 PF00765 Autoinducer synthase CJO93_RS19680 PF08264 Anticodon-binding domain of tRNA CJO93_RS19680 PF00133 tRNA synthetases class I (I, L, M and V) CJO93_RS19680 PF10458 Valyl tRNA synthetase tRNA binding arm CJO93_RS19705 PF00501 AMP-binding enzyme CJO93_RS19710 PF16861 Carbamoyltransferase C-terminus CJO93_RS19710 PF02543 Carbamoyltransferase N-terminus CJO93_RS19715 PF05598 Transposase domain (DUF772) CJO93_RS19715 PF01609 Transposase DDE domain CJO93_RS19730 PF13193 AMP-binding enzyme C-terminal domain CJO93_RS19730 PF00501 AMP-binding enzyme CJO93_RS19730 PF16197 Ketoacyl-synthetase C-terminal extension CJO93_RS19730 PF14765 Polyketide synthase dehydratase CJO93_RS19730 PF00550 Phosphopantetheine attachment site CJO93_RS19730 PF08659 KR domain CJO93_RS19730 PF00668 Condensation domain CJO93_RS19730 PF00109 Beta-ketoacyl synthase, N-terminal domain CJO93_RS19730 PF02801 Beta-ketoacyl synthase, C-terminal domain CJO93_RS19745 PF00155 Aminotransferase class I and II CJO93_RS19755 PF00440 Bacterial regulatory proteins, tetR family CJO93_RS19780 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CJO93_RS19780 PF07733 Bacterial DNA polymerase III alpha NTPase domain CJO93_RS19780 PF14579 Helix-hairpin-helix motif CJO93_RS19780 PF02811 PHP domain CJO93_RS19785 PF01381 Helix-turn-helix CJO93_RS19790 PF03600 Citrate transporter CJO93_RS19800 PF00009 Elongation factor Tu GTP binding domain CJO93_RS19800 PF00679 Elongation factor G C-terminus CJO93_RS19800 PF03764 Elongation factor G, domain IV CJO93_RS19800 PF14492 Elongation Factor G, domain II CJO93_RS19800 PF03144 Elongation factor Tu domain 2 CJO93_RS19815 PF00037 4Fe-4S binding domain CJO93_RS19815 PF11953 Domain of unknown function (DUF3470) CJO93_RS19830 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CJO93_RS19830 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CJO93_RS19845 PF00990 Diguanylate cyclase, GGDEF domain CJO93_RS19845 PF00563 EAL domain CJO93_RS19845 PF03707 Bacterial signalling protein N terminal repeat CJO93_RS19850 PF06039 Malate:quinone oxidoreductase (Mqo) CJO93_RS19860 PF17934 Tetracyclin repressor-like, C-terminal domain CJO93_RS19860 PF00440 Bacterial regulatory proteins, tetR family CJO93_RS19865 PF02321 Outer membrane efflux protein CJO93_RS19870 PF00873 AcrB/AcrD/AcrF family CJO93_RS19895 PF03466 LysR substrate binding domain CJO93_RS19895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS19910 PF00701 Dihydrodipicolinate synthetase family CJO93_RS19915 PF00171 Aldehyde dehydrogenase family CJO93_RS19920 PF07690 Major Facilitator Superfamily CJO93_RS19925 PF13378 Enolase C-terminal domain-like CJO93_RS19925 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CJO93_RS19930 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CJO93_RS19930 PF08666 SAF domain CJO93_RS19935 PF01370 NAD dependent epimerase/dehydratase family CJO93_RS19940 PF08450 SMP-30/Gluconolactonase/LRE-like region CJO93_RS19945 PF00295 Glycosyl hydrolases family 28 CJO93_RS19950 PF07690 Major Facilitator Superfamily CJO93_RS19955 PF01467 Cytidylyltransferase-like CJO93_RS19955 PF00293 NUDIX domain CJO93_RS19980 PF02203 Tar ligand binding domain homologue CJO93_RS19980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO93_RS19980 PF00672 HAMP domain CJO93_RS19985 PF01464 Transglycosylase SLT domain CJO93_RS20030 PF04542 Sigma-70 region 2 CJO93_RS20030 PF08281 Sigma-70, region 4 CJO93_RS20040 PF00072 Response regulator receiver domain CJO93_RS20040 PF00196 Bacterial regulatory proteins, luxR family CJO93_RS20045 PF00072 Response regulator receiver domain CJO93_RS20045 PF00486 Transcriptional regulatory protein, C terminal CJO93_RS20080 PF01313 Bacterial export proteins, family 3 CJO93_RS20085 PF00813 FliP family CJO93_RS20095 PF09483 Type III secretion protein (HpaP) CJO93_RS20100 PF00771 FHIPEP family CJO93_RS20105 PF01312 FlhB HrpN YscU SpaS Family CJO93_RS20120 PF01514 Secretory protein of YscJ/FliF family CJO93_RS20135 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJO93_RS20135 PF02874 ATP synthase alpha/beta family, beta-barrel domain CJO93_RS20135 PF18269 T3SS EscN ATPase C-terminal domain CJO93_RS20150 PF12833 Helix-turn-helix domain CJO93_RS20155 PF03958 Bacterial type II/III secretion system short domain CJO93_RS20155 PF00263 Bacterial type II and III secretion system protein CJO93_RS20160 PF13855 Leucine rich repeat CJO93_RS20185 PF00295 Glycosyl hydrolases family 28 CJO93_RS20205 PF17854 FtsK alpha domain CJO93_RS20205 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CJO93_RS20205 PF01580 FtsK/SpoIIIE family CJO93_RS20205 PF09397 Ftsk gamma domain CJO93_RS20215 PF03951 Glutamine synthetase, beta-Grasp domain CJO93_RS20215 PF00120 Glutamine synthetase, catalytic domain CJO93_RS20220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS20220 PF03466 LysR substrate binding domain CJO93_RS20225 PF02899 Phage integrase, N-terminal SAM-like domain CJO93_RS20225 PF00589 Phage integrase family CJO93_RS20240 PF13700 Domain of unknown function (DUF4158) CJO93_RS20240 PF01526 Tn3 transposase DDE domain CJO93_RS20275 PF00155 Aminotransferase class I and II CJO93_RS20295 PF17885 Styrene monooxygenase A putative substrate binding domain CJO93_RS20300 PF01613 Flavin reductase like domain CJO93_RS20320 PF12833 Helix-turn-helix domain CJO93_RS20320 PF14525 AraC-binding-like domain CJO93_RS20340 PF01494 FAD binding domain CJO93_RS20345 PF07883 Cupin domain CJO93_RS20350 PF01557 Fumarylacetoacetate (FAA) hydrolase family CJO93_RS20355 PF00795 Carbon-nitrogen hydrolase CJO93_RS20360 PF17645 Arylmalonate decarboxylase CJO93_RS20390 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CJO93_RS20400 PF12833 Helix-turn-helix domain CJO93_RS20400 PF02311 AraC-like ligand binding domain CJO93_RS20410 PF00501 AMP-binding enzyme CJO93_RS20410 PF08242 Methyltransferase domain CJO93_RS20410 PF00668 Condensation domain CJO93_RS20410 PF00550 Phosphopantetheine attachment site CJO93_RS20420 PF08021 Siderophore-interacting FAD-binding domain CJO93_RS20420 PF04954 Siderophore-interacting protein CJO93_RS20420 PF00664 ABC transporter transmembrane region CJO93_RS20420 PF00005 ABC transporter CJO93_RS20425 PF04954 Siderophore-interacting protein CJO93_RS20425 PF00664 ABC transporter transmembrane region CJO93_RS20425 PF00005 ABC transporter CJO93_RS20425 PF08021 Siderophore-interacting FAD-binding domain CJO93_RS20430 PF07715 TonB-dependent Receptor Plug Domain CJO93_RS20430 PF00593 TonB dependent receptor CJO93_RS20435 PF08242 Methyltransferase domain CJO93_RS20435 PF00550 Phosphopantetheine attachment site CJO93_RS20435 PF00668 Condensation domain CJO93_RS20435 PF00501 AMP-binding enzyme CJO93_RS20445 PF08241 Methyltransferase domain CJO93_RS20450 PF00654 Voltage gated chloride channel CJO93_RS20455 PF01965 DJ-1/PfpI family CJO93_RS20470 PF00364 Biotin-requiring enzyme CJO93_RS20470 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CJO93_RS20470 PF02817 e3 binding domain CJO93_RS20475 PF02779 Transketolase, pyrimidine binding domain CJO93_RS20475 PF02780 Transketolase, C-terminal domain CJO93_RS20480 PF00676 Dehydrogenase E1 component CJO93_RS20490 PF13737 Transposase DDE domain CJO93_RS20495 PF01510 N-acetylmuramoyl-L-alanine amidase CJO93_RS20500 PF00149 Calcineurin-like phosphoesterase CJO93_RS20505 PF08402 TOBE domain CJO93_RS20505 PF00005 ABC transporter CJO93_RS20510 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS20520 PF01547 Bacterial extracellular solute-binding protein CJO93_RS20525 PF00356 Bacterial regulatory proteins, lacI family CJO93_RS20540 PF01026 TatD related DNase CJO93_RS20550 PF09115 DNA polymerase III, delta subunit, C terminal CJO93_RS20555 PF02223 Thymidylate kinase CJO93_RS20560 PF02618 YceG-like family CJO93_RS20565 PF01571 Aminomethyltransferase folate-binding domain CJO93_RS20580 PF17287 POTRA domain CJO93_RS20580 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CJO93_RS20580 PF08479 POTRA domain, ShlB-type CJO93_RS20585 PF13737 Transposase DDE domain CJO93_RS20600 PF13700 Domain of unknown function (DUF4158) CJO93_RS20600 PF01526 Tn3 transposase DDE domain CJO93_RS20615 PF02899 Phage integrase, N-terminal SAM-like domain CJO93_RS20615 PF00589 Phage integrase family CJO93_RS20715 PF13533 Biotin-lipoyl like CJO93_RS20805 PF00155 Aminotransferase class I and II CJO93_RS20810 PF00202 Aminotransferase class-III CJO93_RS20835 PF03466 LysR substrate binding domain CJO93_RS20835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS20840 PF05981 CreA protein CJO93_RS20845 PF00111 2Fe-2S iron-sulfur cluster binding domain CJO93_RS20845 PF01799 [2Fe-2S] binding domain CJO93_RS20850 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CJO93_RS20850 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CJO93_RS20875 PF13478 XdhC Rossmann domain CJO93_RS20875 PF02625 XdhC and CoxI family CJO93_RS20890 PF02308 MgtC family CJO93_RS20895 PF00672 HAMP domain CJO93_RS20895 PF02203 Tar ligand binding domain homologue CJO93_RS20895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO93_RS20905 PF00723 Glycosyl hydrolases family 15 CJO93_RS20915 PF00171 Aldehyde dehydrogenase family CJO93_RS20930 PF12848 ABC transporter CJO93_RS20930 PF00005 ABC transporter CJO93_RS20935 PF17676 LD-carboxypeptidase C-terminal domain CJO93_RS20935 PF02016 LD-carboxypeptidase N-terminal domain CJO93_RS20940 PF14437 MafB19-like deaminase CJO93_RS20945 PF01242 6-pyruvoyl tetrahydropterin synthase CJO93_RS20970 PF07804 HipA-like C-terminal domain CJO93_RS20970 PF13657 HipA N-terminal domain CJO93_RS20990 PF00775 Dioxygenase CJO93_RS20995 PF00775 Dioxygenase CJO93_RS20995 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal CJO93_RS21000 PF03466 LysR substrate binding domain CJO93_RS21000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS21055 PF04405 Domain of Unknown function (DUF542) CJO93_RS21055 PF01814 Hemerythrin HHE cation binding domain CJO93_RS21060 PF02954 Bacterial regulatory protein, Fis family CJO93_RS21060 PF00158 Sigma-54 interaction domain CJO93_RS21065 PF01370 NAD dependent epimerase/dehydratase family CJO93_RS21070 PF00155 Aminotransferase class I and II CJO93_RS21075 PF08671 Anti-repressor SinI CJO93_RS21075 PF01381 Helix-turn-helix CJO93_RS21100 PF08859 DGC domain CJO93_RS21105 PF02036 SCP-2 sterol transfer family CJO93_RS21115 PF01136 Peptidase family U32 CJO93_RS21120 PF01136 Peptidase family U32 CJO93_RS21130 PF07690 Major Facilitator Superfamily CJO93_RS21135 PF07690 Major Facilitator Superfamily CJO93_RS21140 PF00384 Molybdopterin oxidoreductase CJO93_RS21140 PF14710 Respiratory nitrate reductase alpha N-terminal CJO93_RS21140 PF01568 Molydopterin dinucleotide binding domain CJO93_RS21145 PF14711 Respiratory nitrate reductase beta C-terminal CJO93_RS21145 PF13247 4Fe-4S dicluster domain CJO93_RS21150 PF02613 Nitrate reductase delta subunit CJO93_RS21155 PF02665 Nitrate reductase gamma subunit CJO93_RS21160 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CJO93_RS21165 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CJO93_RS21165 PF00672 HAMP domain CJO93_RS21165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS21165 PF07730 Histidine kinase CJO93_RS21170 PF00072 Response regulator receiver domain CJO93_RS21170 PF00196 Bacterial regulatory proteins, luxR family CJO93_RS21190 PF02581 Thiamine monophosphate synthase CJO93_RS21195 PF00083 Sugar (and other) transporter CJO93_RS21195 PF07690 Major Facilitator Superfamily CJO93_RS21200 PF00465 Iron-containing alcohol dehydrogenase CJO93_RS21210 PF05598 Transposase domain (DUF772) CJO93_RS21210 PF01609 Transposase DDE domain CJO93_RS21220 PF02630 SCO1/SenC CJO93_RS21225 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CJO93_RS21225 PF00034 Cytochrome c CJO93_RS21235 PF00115 Cytochrome C and Quinol oxidase polypeptide I CJO93_RS21240 PF00005 ABC transporter CJO93_RS21240 PF17760 UvrA interaction domain CJO93_RS21240 PF17755 UvrA DNA-binding domain CJO93_RS21245 PF00375 Sodium:dicarboxylate symporter family CJO93_RS21250 PF00180 Isocitrate/isopropylmalate dehydrogenase CJO93_RS21285 PF13737 Transposase DDE domain CJO93_RS21290 PF01609 Transposase DDE domain CJO93_RS21290 PF05598 Transposase domain (DUF772) CJO93_RS21295 PF02719 Polysaccharide biosynthesis protein CJO93_RS21305 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CJO93_RS21310 PF00132 Bacterial transferase hexapeptide (six repeats) CJO93_RS21310 PF17836 PglD N-terminal domain CJO93_RS21310 PF14602 Hexapeptide repeat of succinyl-transferase CJO93_RS21315 PF02397 Bacterial sugar transferase CJO93_RS21330 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CJO93_RS21330 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CJO93_RS21335 PF14602 Hexapeptide repeat of succinyl-transferase CJO93_RS21335 PF12464 Maltose acetyltransferase CJO93_RS21355 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CJO93_RS21355 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CJO93_RS21355 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CJO93_RS21360 PF02350 UDP-N-acetylglucosamine 2-epimerase CJO93_RS21365 PF13614 AAA domain CJO93_RS21365 PF13807 G-rich domain on putative tyrosine kinase CJO93_RS21365 PF02706 Chain length determinant protein CJO93_RS21370 PF01451 Low molecular weight phosphotyrosine protein phosphatase CJO93_RS21375 PF10531 SLBB domain CJO93_RS21375 PF02563 Polysaccharide biosynthesis/export protein CJO93_RS21420 PF02203 Tar ligand binding domain homologue CJO93_RS21420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO93_RS21420 PF00672 HAMP domain CJO93_RS21445 PF10005 zinc-ribbon domain CJO93_RS21445 PF15887 Putative zinc-binding metallo-peptidase CJO93_RS21460 PF05114 Protein of unknown function (DUF692) CJO93_RS21485 PF00873 AcrB/AcrD/AcrF family CJO93_RS21490 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJO93_RS21495 PF00072 Response regulator receiver domain CJO93_RS21495 PF00486 Transcriptional regulatory protein, C terminal CJO93_RS21500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS21500 PF00672 HAMP domain CJO93_RS21500 PF00512 His Kinase A (phospho-acceptor) domain CJO93_RS21520 PF07690 Major Facilitator Superfamily CJO93_RS21525 PF00384 Molybdopterin oxidoreductase CJO93_RS21535 PF02634 FdhD/NarQ family CJO93_RS21540 PF13188 PAS domain CJO93_RS21540 PF03707 Bacterial signalling protein N terminal repeat CJO93_RS21540 PF00563 EAL domain CJO93_RS21540 PF00990 Diguanylate cyclase, GGDEF domain CJO93_RS21545 PF02705 K+ potassium transporter CJO93_RS21550 PF00313 'Cold-shock' DNA-binding domain CJO93_RS21560 PF01609 Transposase DDE domain CJO93_RS21560 PF13006 Insertion element 4 transposase N-terminal CJO93_RS21565 PF00171 Aldehyde dehydrogenase family CJO93_RS21570 PF00202 Aminotransferase class-III CJO93_RS21575 PF00392 Bacterial regulatory proteins, gntR family CJO93_RS21575 PF00155 Aminotransferase class I and II CJO93_RS21580 PF06314 Acetoacetate decarboxylase (ADC) CJO93_RS21600 PF00593 TonB dependent receptor CJO93_RS21600 PF07715 TonB-dependent Receptor Plug Domain CJO93_RS21650 PF05860 haemagglutination activity domain CJO93_RS21650 PF13332 Hemagglutinin repeat CJO93_RS21650 PF15526 Novel toxin 21 CJO93_RS21650 PF05594 Haemagluttinin repeat CJO93_RS21650 PF04829 Pre-toxin domain with VENN motif CJO93_RS21675 PF02794 RTX toxin acyltransferase family CJO93_RS21680 PF17287 POTRA domain CJO93_RS21680 PF08479 POTRA domain, ShlB-type CJO93_RS21680 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CJO93_RS21690 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CJO93_RS21690 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CJO93_RS21705 PF02954 Bacterial regulatory protein, Fis family CJO93_RS21705 PF00072 Response regulator receiver domain CJO93_RS21705 PF00158 Sigma-54 interaction domain CJO93_RS21735 PF00437 Type II/IV secretion system protein CJO93_RS21745 PF00263 Bacterial type II and III secretion system protein CJO93_RS21745 PF04972 BON domain CJO93_RS21745 PF13629 Pilus formation protein N terminal region CJO93_RS21785 PF00072 Response regulator receiver domain CJO93_RS21785 PF00196 Bacterial regulatory proteins, luxR family CJO93_RS21790 PF00990 Diguanylate cyclase, GGDEF domain CJO93_RS21790 PF03707 Bacterial signalling protein N terminal repeat CJO93_RS21790 PF00563 EAL domain CJO93_RS21800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO93_RS21800 PF08269 Cache domain CJO93_RS21810 PF16363 GDP-mannose 4,6 dehydratase CJO93_RS21815 PF02899 Phage integrase, N-terminal SAM-like domain CJO93_RS21815 PF00589 Phage integrase family CJO93_RS21820 PF02358 Trehalose-phosphatase CJO93_RS21825 PF00982 Glycosyltransferase family 20 CJO93_RS21830 PF01047 MarR family CJO93_RS21835 PF02566 OsmC-like protein CJO93_RS21840 PF07859 alpha/beta hydrolase fold CJO93_RS21850 PF03466 LysR substrate binding domain CJO93_RS21850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS21855 PF07859 alpha/beta hydrolase fold CJO93_RS21860 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJO93_RS21865 PF00873 AcrB/AcrD/AcrF family CJO93_RS21870 PF02321 Outer membrane efflux protein CJO93_RS21875 PF12833 Helix-turn-helix domain CJO93_RS21880 PF01212 Beta-eliminating lyase CJO93_RS21900 PF01638 HxlR-like helix-turn-helix CJO93_RS21905 PF01575 MaoC like domain CJO93_RS21915 PF08240 Alcohol dehydrogenase GroES-like domain CJO93_RS21915 PF00107 Zinc-binding dehydrogenase CJO93_RS21915 PF16197 Ketoacyl-synthetase C-terminal extension CJO93_RS21915 PF02801 Beta-ketoacyl synthase, C-terminal domain CJO93_RS21915 PF08659 KR domain CJO93_RS21915 PF00550 Phosphopantetheine attachment site CJO93_RS21915 PF14765 Polyketide synthase dehydratase CJO93_RS21915 PF00109 Beta-ketoacyl synthase, N-terminal domain CJO93_RS21915 PF00698 Acyl transferase domain CJO93_RS21925 PF03466 LysR substrate binding domain CJO93_RS21925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS21930 PF01609 Transposase DDE domain CJO93_RS21930 PF05598 Transposase domain (DUF772) CJO93_RS21940 PF00107 Zinc-binding dehydrogenase CJO93_RS21940 PF08240 Alcohol dehydrogenase GroES-like domain CJO93_RS21965 PF00106 short chain dehydrogenase CJO93_RS21985 PF00440 Bacterial regulatory proteins, tetR family CJO93_RS21990 PF12706 Beta-lactamase superfamily domain CJO93_RS21995 PF00106 short chain dehydrogenase CJO93_RS22000 PF00107 Zinc-binding dehydrogenase CJO93_RS22000 PF08240 Alcohol dehydrogenase GroES-like domain CJO93_RS22005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS22005 PF03466 LysR substrate binding domain CJO93_RS22010 PF00230 Major intrinsic protein CJO93_RS22015 PF01451 Low molecular weight phosphotyrosine protein phosphatase CJO93_RS22020 PF01022 Bacterial regulatory protein, arsR family CJO93_RS22065 PF05076 Suppressor of fused protein (SUFU) CJO93_RS22070 PF04740 LXG domain of WXG superfamily CJO93_RS22070 PF14449 Pre-toxin TG CJO93_RS22070 PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues CJO93_RS22080 PF06715 Gp5 C-terminal repeat (3 copies) CJO93_RS22080 PF04717 Type VI secretion system, phage-baseplate injector CJO93_RS22090 PF00196 Bacterial regulatory proteins, luxR family CJO93_RS22090 PF00072 Response regulator receiver domain CJO93_RS22095 PF00072 Response regulator receiver domain CJO93_RS22095 PF00196 Bacterial regulatory proteins, luxR family CJO93_RS22100 PF04960 Glutaminase CJO93_RS22105 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS22110 PF08402 TOBE domain CJO93_RS22110 PF00005 ABC transporter CJO93_RS22115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS22115 PF03459 TOBE domain CJO93_RS22125 PF03707 Bacterial signalling protein N terminal repeat CJO93_RS22125 PF00990 Diguanylate cyclase, GGDEF domain CJO93_RS22125 PF00563 EAL domain CJO93_RS22145 PF06906 Protein of unknown function (DUF1272) CJO93_RS22165 PF00672 HAMP domain CJO93_RS22165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS22165 PF00512 His Kinase A (phospho-acceptor) domain CJO93_RS22190 PF05199 GMC oxidoreductase CJO93_RS22215 PF03741 Integral membrane protein TerC family CJO93_RS22215 PF03471 Transporter associated domain CJO93_RS22220 PF03150 Di-haem cytochrome c peroxidase CJO93_RS22225 PF04185 Phosphoesterase family CJO93_RS22250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS22250 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJO93_RS22250 PF00072 Response regulator receiver domain CJO93_RS22250 PF00989 PAS fold CJO93_RS22250 PF01627 Hpt domain CJO93_RS22250 PF00512 His Kinase A (phospho-acceptor) domain CJO93_RS22265 PF03412 Peptidase C39 family CJO93_RS22265 PF00664 ABC transporter transmembrane region CJO93_RS22265 PF00005 ABC transporter CJO93_RS22270 PF00529 HlyD membrane-fusion protein of T1SS CJO93_RS22290 PF07969 Amidohydrolase family CJO93_RS22300 PF02447 GntP family permease CJO93_RS22305 PF01081 KDPG and KHG aldolase CJO93_RS22310 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CJO93_RS22315 PF00072 Response regulator receiver domain CJO93_RS22315 PF00196 Bacterial regulatory proteins, luxR family CJO93_RS22320 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CJO93_RS22330 PF00672 HAMP domain CJO93_RS22330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS22330 PF00512 His Kinase A (phospho-acceptor) domain CJO93_RS22335 PF00486 Transcriptional regulatory protein, C terminal CJO93_RS22335 PF00072 Response regulator receiver domain CJO93_RS22340 PF13533 Biotin-lipoyl like CJO93_RS22345 PF00873 AcrB/AcrD/AcrF family CJO93_RS22350 PF00873 AcrB/AcrD/AcrF family CJO93_RS22355 PF02321 Outer membrane efflux protein CJO93_RS22365 PF03707 Bacterial signalling protein N terminal repeat CJO93_RS22365 PF00990 Diguanylate cyclase, GGDEF domain CJO93_RS22365 PF00563 EAL domain CJO93_RS22380 PF02322 Cytochrome bd terminal oxidase subunit II CJO93_RS22385 PF01654 Cytochrome bd terminal oxidase subunit I CJO93_RS22390 PF00563 EAL domain CJO93_RS22390 PF03707 Bacterial signalling protein N terminal repeat CJO93_RS22390 PF13188 PAS domain CJO93_RS22390 PF00990 Diguanylate cyclase, GGDEF domain CJO93_RS22395 PF00672 HAMP domain CJO93_RS22395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO93_RS22395 PF02203 Tar ligand binding domain homologue CJO93_RS22405 PF13091 PLD-like domain CJO93_RS22405 PF13396 Phospholipase_D-nuclease N-terminal CJO93_RS22415 PF01554 MatE CJO93_RS22430 PF01568 Molydopterin dinucleotide binding domain CJO93_RS22430 PF04324 BFD-like [2Fe-2S] binding domain CJO93_RS22430 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CJO93_RS22430 PF00384 Molybdopterin oxidoreductase CJO93_RS22435 PF04324 BFD-like [2Fe-2S] binding domain CJO93_RS22435 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CJO93_RS22435 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CJO93_RS22435 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO93_RS22435 PF18267 Rubredoxin NAD+ reductase C-terminal domain CJO93_RS22440 PF13806 Rieske-like [2Fe-2S] domain CJO93_RS22445 PF18267 Rubredoxin NAD+ reductase C-terminal domain CJO93_RS22445 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO93_RS22445 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CJO93_RS22445 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CJO93_RS22445 PF04324 BFD-like [2Fe-2S] binding domain CJO93_RS22450 PF07690 Major Facilitator Superfamily CJO93_RS22455 PF08447 PAS fold CJO93_RS22455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO93_RS22470 PF00296 Luciferase-like monooxygenase CJO93_RS22485 PF00561 alpha/beta hydrolase fold CJO93_RS22490 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CJO93_RS22495 PF03737 Aldolase/RraA CJO93_RS22500 PF00155 Aminotransferase class I and II CJO93_RS22505 PF00180 Isocitrate/isopropylmalate dehydrogenase CJO93_RS22505 PF03737 Aldolase/RraA CJO93_RS22515 PF03466 LysR substrate binding domain CJO93_RS22515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS22530 PF13737 Transposase DDE domain CJO93_RS22540 PF05598 Transposase domain (DUF772) CJO93_RS22540 PF01609 Transposase DDE domain CJO93_RS22550 PF13406 Transglycosylase SLT domain CJO93_RS22560 PF01654 Cytochrome bd terminal oxidase subunit I CJO93_RS22565 PF02322 Cytochrome bd terminal oxidase subunit II CJO93_RS22570 PF02558 Ketopantoate reductase PanE/ApbA CJO93_RS22570 PF08546 Ketopantoate reductase PanE/ApbA C terminal CJO93_RS22580 PF01042 Endoribonuclease L-PSP CJO93_RS22585 PF12833 Helix-turn-helix domain CJO93_RS22615 PF07804 HipA-like C-terminal domain CJO93_RS22615 PF13657 HipA N-terminal domain CJO93_RS22625 PF07690 Major Facilitator Superfamily CJO93_RS22630 PF03466 LysR substrate binding domain CJO93_RS22630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS22635 PF02525 Flavodoxin-like fold CJO93_RS22655 PF00890 FAD binding domain CJO93_RS22655 PF02910 Fumarate reductase flavoprotein C-term CJO93_RS22660 PF01925 Sulfite exporter TauE/SafE CJO93_RS22665 PF13193 AMP-binding enzyme C-terminal domain CJO93_RS22665 PF00501 AMP-binding enzyme CJO93_RS22675 PF03466 LysR substrate binding domain CJO93_RS22675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS22680 PF01925 Sulfite exporter TauE/SafE CJO93_RS22710 PF05598 Transposase domain (DUF772) CJO93_RS22710 PF01609 Transposase DDE domain CJO93_RS22715 PF05552 Conserved TM helix CJO93_RS22720 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CJO93_RS22730 PF00580 UvrD/REP helicase N-terminal domain CJO93_RS22730 PF13361 UvrD-like helicase C-terminal domain CJO93_RS22745 PF07690 Major Facilitator Superfamily CJO93_RS22750 PF00206 Lyase CJO93_RS22750 PF10415 Fumarase C C-terminus CJO93_RS22765 PF00391 PEP-utilising enzyme, mobile domain CJO93_RS22765 PF00381 PTS HPr component phosphorylation site CJO93_RS22765 PF02896 PEP-utilising enzyme, TIM barrel domain CJO93_RS22765 PF05524 PEP-utilising enzyme, N-terminal CJO93_RS22765 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CJO93_RS22770 PF02264 LamB porin CJO93_RS22775 PF08244 Glycosyl hydrolases family 32 C terminal CJO93_RS22775 PF00251 Glycosyl hydrolases family 32 N-terminal domain CJO93_RS22780 PF02378 Phosphotransferase system, EIIC CJO93_RS22780 PF00367 phosphotransferase system, EIIB CJO93_RS22785 PF00356 Bacterial regulatory proteins, lacI family CJO93_RS22790 PF07963 Prokaryotic N-terminal methylation motif CJO93_RS22790 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor CJO93_RS22795 PF05567 Neisseria PilC beta-propeller domain CJO93_RS22815 PF00114 Pilin (bacterial filament) CJO93_RS22815 PF07963 Prokaryotic N-terminal methylation motif CJO93_RS22820 PF02675 S-adenosylmethionine decarboxylase CJO93_RS22840 PF03994 Domain of Unknown Function (DUF350) CJO93_RS22860 PF13458 Periplasmic binding protein CJO93_RS22875 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJO93_RS22875 PF00005 ABC transporter CJO93_RS22880 PF00005 ABC transporter CJO93_RS22895 PF01738 Dienelactone hydrolase family CJO93_RS22935 PF13737 Transposase DDE domain CJO93_RS22960 PF13737 Transposase DDE domain CJO93_RS22975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO93_RS22975 PF00672 HAMP domain CJO93_RS22975 PF02203 Tar ligand binding domain homologue CJO93_RS22980 PF16870 2-oxoglutarate dehydrogenase C-terminal CJO93_RS22980 PF02779 Transketolase, pyrimidine binding domain CJO93_RS22980 PF00676 Dehydrogenase E1 component CJO93_RS22980 PF16078 2-oxoglutarate dehydrogenase N-terminus CJO93_RS22985 PF01553 Acyltransferase CJO93_RS23000 PF18793 Nitrous oxide reductase propeller repeat 2 CJO93_RS23000 PF18764 Nitrous oxide reductase propeller repeat CJO93_RS23000 PF13473 Cupredoxin-like domain CJO93_RS23005 PF12801 4Fe-4S binding domain CJO93_RS23005 PF04205 FMN-binding domain CJO93_RS23010 PF05048 Periplasmic copper-binding protein (NosD) CJO93_RS23015 PF00005 ABC transporter CJO93_RS23020 PF12679 ABC-2 family transporter protein CJO93_RS23025 PF05573 NosL CJO93_RS23035 PF05860 haemagglutination activity domain CJO93_RS23035 PF13332 Hemagglutinin repeat CJO93_RS23035 PF04829 Pre-toxin domain with VENN motif CJO93_RS23035 PF05860 haemagglutination activity domain CJO93_RS23035 PF13332 Hemagglutinin repeat CJO93_RS23035 PF04829 Pre-toxin domain with VENN motif CJO93_RS23050 PF08479 POTRA domain, ShlB-type CJO93_RS23050 PF17287 POTRA domain CJO93_RS23050 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CJO93_RS23065 PF01037 Lrp/AsnC ligand binding domain CJO93_RS23080 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CJO93_RS23080 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO93_RS23085 PF08274 PhnA Zinc-Ribbon CJO93_RS23085 PF03831 PhnA domain CJO93_RS23105 PF02325 YGGT family CJO93_RS23125 PF12706 Beta-lactamase superfamily domain CJO93_RS23130 PF04542 Sigma-70 region 2 CJO93_RS23130 PF04545 Sigma-70, region 4 CJO93_RS23130 PF04539 Sigma-70 region 3 CJO93_RS23140 PF00448 SRP54-type protein, GTPase domain CJO93_RS23145 PF00771 FHIPEP family CJO93_RS23150 PF01312 FlhB HrpN YscU SpaS Family CJO93_RS23155 PF00440 Bacterial regulatory proteins, tetR family CJO93_RS23155 PF17938 Tetracyclin repressor-like, C-terminal domain CJO93_RS23160 PF07690 Major Facilitator Superfamily CJO93_RS23165 PF01220 Dehydroquinase class II CJO93_RS23170 PF08501 Shikimate dehydrogenase substrate binding domain CJO93_RS23170 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CJO93_RS23175 PF13609 Gram-negative porin CJO93_RS23180 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CJO93_RS23180 PF01261 Xylose isomerase-like TIM barrel CJO93_RS23185 PF04344 Chemotaxis phosphatase, CheZ CJO93_RS23190 PF00072 Response regulator receiver domain CJO93_RS23195 PF01339 CheB methylesterase CJO93_RS23195 PF00072 Response regulator receiver domain CJO93_RS23200 PF03975 CheD chemotactic sensory transduction CJO93_RS23205 PF01739 CheR methyltransferase, SAM binding domain CJO93_RS23205 PF03705 CheR methyltransferase, all-alpha domain CJO93_RS23210 PF00672 HAMP domain CJO93_RS23210 PF02203 Tar ligand binding domain homologue CJO93_RS23210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO93_RS23215 PF01584 CheW-like domain CJO93_RS23220 PF02895 Signal transducing histidine kinase, homodimeric domain CJO93_RS23220 PF01627 Hpt domain CJO93_RS23220 PF01584 CheW-like domain CJO93_RS23220 PF09078 CheY binding CJO93_RS23220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS23225 PF00072 Response regulator receiver domain CJO93_RS23230 PF13677 Membrane MotB of proton-channel complex MotA/MotB CJO93_RS23230 PF00691 OmpA family CJO93_RS23235 PF01618 MotA/TolQ/ExbB proton channel family CJO93_RS23240 PF05280 Flagellar transcriptional activator (FlhC) CJO93_RS23245 PF05247 Flagellar transcriptional activator (FlhD) CJO93_RS23265 PF07690 Major Facilitator Superfamily CJO93_RS23285 PF00216 Bacterial DNA-binding protein CJO93_RS23305 PF01609 Transposase DDE domain CJO93_RS23305 PF05598 Transposase domain (DUF772) CJO93_RS23310 PF13737 Transposase DDE domain CJO93_RS23320 PF02515 CoA-transferase family III CJO93_RS23325 PF00550 Phosphopantetheine attachment site CJO93_RS23325 PF13193 AMP-binding enzyme C-terminal domain CJO93_RS23325 PF00668 Condensation domain CJO93_RS23325 PF00501 AMP-binding enzyme CJO93_RS23330 PF01494 FAD binding domain CJO93_RS23335 PF00202 Aminotransferase class-III CJO93_RS23340 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CJO93_RS23370 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CJO93_RS23370 PF01266 FAD dependent oxidoreductase CJO93_RS23385 PF00550 Phosphopantetheine attachment site CJO93_RS23385 PF00668 Condensation domain CJO93_RS23385 PF13193 AMP-binding enzyme C-terminal domain CJO93_RS23385 PF00501 AMP-binding enzyme CJO93_RS23405 PF09334 tRNA synthetases class I (M) CJO93_RS23405 PF01588 Putative tRNA binding domain CJO93_RS23410 PF00132 Bacterial transferase hexapeptide (six repeats) CJO93_RS23410 PF06426 Serine acetyltransferase, N-terminal CJO93_RS23415 PF13737 Transposase DDE domain CJO93_RS23430 PF00512 His Kinase A (phospho-acceptor) domain CJO93_RS23430 PF00672 HAMP domain CJO93_RS23430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS23435 PF00072 Response regulator receiver domain CJO93_RS23435 PF00486 Transcriptional regulatory protein, C terminal CJO93_RS23455 PF01609 Transposase DDE domain CJO93_RS23455 PF05598 Transposase domain (DUF772) CJO93_RS23475 PF01609 Transposase DDE domain CJO93_RS23475 PF05598 Transposase domain (DUF772) CJO93_RS23500 PF05598 Transposase domain (DUF772) CJO93_RS23500 PF01609 Transposase DDE domain CJO93_RS23515 PF03466 LysR substrate binding domain CJO93_RS23515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS23525 PF00248 Aldo/keto reductase family CJO93_RS23550 PF03466 LysR substrate binding domain CJO93_RS23550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS23580 PF00561 alpha/beta hydrolase fold CJO93_RS23595 PF16861 Carbamoyltransferase C-terminus CJO93_RS23595 PF02543 Carbamoyltransferase N-terminus CJO93_RS23610 PF02543 Carbamoyltransferase N-terminus CJO93_RS23610 PF16861 Carbamoyltransferase C-terminus CJO93_RS23630 PF03358 NADPH-dependent FMN reductase CJO93_RS23635 PF02254 TrkA-N domain CJO93_RS23635 PF00999 Sodium/hydrogen exchanger family CJO93_RS23670 PF07732 Multicopper oxidase CJO93_RS23680 PF00115 Cytochrome C and Quinol oxidase polypeptide I CJO93_RS23685 PF07702 UTRA domain CJO93_RS23685 PF00392 Bacterial regulatory proteins, gntR family CJO93_RS23690 PF00005 ABC transporter CJO93_RS23695 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS23710 PF00072 Response regulator receiver domain CJO93_RS23710 PF00990 Diguanylate cyclase, GGDEF domain CJO93_RS23730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS23730 PF03466 LysR substrate binding domain CJO93_RS23740 PF00291 Pyridoxal-phosphate dependent enzyme CJO93_RS23745 PF08348 YheO-like PAS domain CJO93_RS23745 PF13309 HTH domain CJO93_RS23760 PF13737 Transposase DDE domain CJO93_RS23770 PF13737 Transposase DDE domain CJO93_RS23785 PF00916 Sulfate permease family CJO93_RS23785 PF01740 STAS domain CJO93_RS23810 PF00990 Diguanylate cyclase, GGDEF domain CJO93_RS23810 PF00072 Response regulator receiver domain CJO93_RS23840 PF03171 2OG-Fe(II) oxygenase superfamily CJO93_RS23840 PF14226 non-haem dioxygenase in morphine synthesis N-terminal CJO93_RS23845 PF07732 Multicopper oxidase CJO93_RS23845 PF07731 Multicopper oxidase CJO93_RS23860 PF13145 PPIC-type PPIASE domain CJO93_RS23865 PF17287 POTRA domain CJO93_RS23865 PF08479 POTRA domain, ShlB-type CJO93_RS23865 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CJO93_RS23870 PF05860 haemagglutination activity domain CJO93_RS23870 PF04829 Pre-toxin domain with VENN motif CJO93_RS23870 PF13018 Extended Signal Peptide of Type V secretion system CJO93_RS23870 PF13332 Hemagglutinin repeat CJO93_RS23915 PF13180 PDZ domain CJO93_RS23920 PF08521 Two-component sensor kinase N-terminal CJO93_RS23920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS23920 PF00512 His Kinase A (phospho-acceptor) domain CJO93_RS23925 PF00072 Response regulator receiver domain CJO93_RS23925 PF00486 Transcriptional regulatory protein, C terminal CJO93_RS23930 PF05819 NolX protein CJO93_RS23935 PF02685 Glucokinase CJO93_RS23935 PF01418 Helix-turn-helix domain, rpiR family CJO93_RS23935 PF01380 SIS domain CJO93_RS23940 PF02685 Glucokinase CJO93_RS23945 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CJO93_RS23950 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CJO93_RS23950 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CJO93_RS23955 PF00920 Dehydratase family CJO93_RS23960 PF00582 Universal stress protein family CJO93_RS23975 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CJO93_RS23980 PF00115 Cytochrome C and Quinol oxidase polypeptide I CJO93_RS23990 PF00510 Cytochrome c oxidase subunit III CJO93_RS24015 PF07690 Major Facilitator Superfamily CJO93_RS24025 PF03466 LysR substrate binding domain CJO93_RS24025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS24030 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJO93_RS24040 PF00528 Binding-protein-dependent transport system inner membrane component CJO93_RS24045 PF00491 Arginase family CJO93_RS24050 PF03472 Autoinducer binding domain CJO93_RS24050 PF00196 Bacterial regulatory proteins, luxR family CJO93_RS24065 PF06628 Catalase-related immune-responsive CJO93_RS24065 PF00199 Catalase CJO93_RS24070 PF13737 Transposase DDE domain CJO93_RS24075 PF01095 Pectinesterase CJO93_RS24085 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CJO93_RS24085 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO93_RS24100 PF00892 EamA-like transporter family CJO93_RS24145 PF13361 UvrD-like helicase C-terminal domain CJO93_RS24145 PF00580 UvrD/REP helicase N-terminal domain CJO93_RS24150 PF05598 Transposase domain (DUF772) CJO93_RS24150 PF01609 Transposase DDE domain CJO93_RS24165 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA CJO93_RS24170 PF06506 Propionate catabolism activator CJO93_RS24170 PF00158 Sigma-54 interaction domain CJO93_RS24170 PF02954 Bacterial regulatory protein, Fis family CJO93_RS24180 PF00285 Citrate synthase, C-terminal domain CJO93_RS24185 PF00330 Aconitase family (aconitate hydratase) CJO93_RS24185 PF00694 Aconitase C-terminal domain CJO93_RS24190 PF04303 PrpF protein CJO93_RS24220 PF00916 Sulfate permease family CJO93_RS24220 PF01740 STAS domain CJO93_RS24225 PF00484 Carbonic anhydrase CJO93_RS24230 PF11992 Domain of unknown function (DUF3488) CJO93_RS24230 PF01841 Transglutaminase-like superfamily CJO93_RS24230 PF13559 Domain of unknown function (DUF4129) CJO93_RS24240 PF17863 AAA lid domain CJO93_RS24240 PF07726 ATPase family associated with various cellular activities (AAA) CJO93_RS24265 PF07715 TonB-dependent Receptor Plug Domain CJO93_RS24265 PF00593 TonB dependent receptor CJO93_RS24280 PF01638 HxlR-like helix-turn-helix CJO93_RS24290 PF07690 Major Facilitator Superfamily CJO93_RS24295 PF05973 Phage derived protein Gp49-like (DUF891) CJO93_RS24300 PF01381 Helix-turn-helix CJO93_RS24305 PF00083 Sugar (and other) transporter CJO93_RS24325 PF13737 Transposase DDE domain CJO93_RS24340 PF14245 Type IV pilin PilA CJO93_RS24340 PF07963 Prokaryotic N-terminal methylation motif CJO93_RS24345 PF07963 Prokaryotic N-terminal methylation motif CJO93_RS24345 PF08334 Type II secretion system (T2SS), protein G CJO93_RS24350 PF00263 Bacterial type II and III secretion system protein CJO93_RS24350 PF03958 Bacterial type II/III secretion system short domain CJO93_RS24375 PF00437 Type II/IV secretion system protein CJO93_RS24380 PF00482 Type II secretion system (T2SS), protein F CJO93_RS24385 PF08334 Type II secretion system (T2SS), protein G CJO93_RS24385 PF07963 Prokaryotic N-terminal methylation motif CJO93_RS24395 PF13737 Transposase DDE domain CJO93_RS24405 PF01609 Transposase DDE domain CJO93_RS24405 PF05598 Transposase domain (DUF772) CJO93_RS24410 PF13737 Transposase DDE domain CJO93_RS24420 PF13458 Periplasmic binding protein CJO93_RS24425 PF02653 Branched-chain amino acid transport system / permease component CJO93_RS24430 PF02653 Branched-chain amino acid transport system / permease component CJO93_RS24430 PF11862 Domain of unknown function (DUF3382) CJO93_RS24435 PF00005 ABC transporter CJO93_RS24435 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJO93_RS24440 PF00005 ABC transporter CJO93_RS24445 PF03466 LysR substrate binding domain CJO93_RS24445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS24455 PF00654 Voltage gated chloride channel CJO93_RS24470 PF01161 Phosphatidylethanolamine-binding protein CJO93_RS24500 PF00816 H-NS histone family CJO93_RS24510 PF00905 Penicillin binding protein transpeptidase domain CJO93_RS24520 PF01494 FAD binding domain CJO93_RS24525 PF00106 short chain dehydrogenase CJO93_RS24535 PF00378 Enoyl-CoA hydratase/isomerase CJO93_RS24540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJO93_RS24540 PF02770 Acyl-CoA dehydrogenase, middle domain CJO93_RS24540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJO93_RS24545 PF00501 AMP-binding enzyme CJO93_RS24545 PF13193 AMP-binding enzyme C-terminal domain CJO93_RS24585 PF13737 Transposase DDE domain CJO93_RS24590 PF13737 Transposase DDE domain CJO93_RS24610 PF01053 Cys/Met metabolism PLP-dependent enzyme CJO93_RS24615 PF01266 FAD dependent oxidoreductase CJO93_RS24620 PF00171 Aldehyde dehydrogenase family CJO93_RS24625 PF13458 Periplasmic binding protein CJO93_RS24630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO93_RS24630 PF03466 LysR substrate binding domain CJO93_RS24650 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) CJO93_RS24650 PF04717 Type VI secretion system, phage-baseplate injector CJO93_RS24650 PF13296 Putative type VI secretion system Rhs element Vgr CJO93_RS24655 PF13609 Gram-negative porin CJO93_RS24660 PF07690 Major Facilitator Superfamily CJO93_RS24670 PF00873 AcrB/AcrD/AcrF family CJO93_RS24675 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJO93_RS24750 PF00171 Aldehyde dehydrogenase family CJO93_RS24755 PF00180 Isocitrate/isopropylmalate dehydrogenase CJO93_RS24760 PF03328 HpcH/HpaI aldolase/citrate lyase family CJO93_RS24765 PF07690 Major Facilitator Superfamily CJO93_RS24770 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CJO93_RS24770 PF08666 SAF domain CJO93_RS24775 PF00356 Bacterial regulatory proteins, lacI family CJO93_RS24780 PF02195 ParB-like nuclease domain CJO93_RS24790 PF01507 Phosphoadenosine phosphosulfate reductase family CJO93_RS24790 PF11922 Domain of unknown function (DUF3440) CJO93_RS24795 PF13018 Extended Signal Peptide of Type V secretion system CJO93_RS24795 PF03895 YadA-like membrane anchor domain CJO93_RS24795 PF05658 Head domain of trimeric autotransporter adhesin CJO93_RS24795 PF05662 Coiled stalk of trimeric autotransporter adhesin CJO93_RS24805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS24805 PF00512 His Kinase A (phospho-acceptor) domain CJO93_RS24805 PF09456 RcsC Alpha-Beta-Loop (ABL) CJO93_RS24805 PF00072 Response regulator receiver domain CJO93_RS24810 PF00360 Phytochrome region CJO93_RS24810 PF01590 GAF domain CJO93_RS24810 PF00563 EAL domain CJO93_RS24810 PF00990 Diguanylate cyclase, GGDEF domain CJO93_RS24855 PF13276 HTH-like domain CJO93_RS24855 PF13683 Integrase core domain CJO93_RS24870 PF02560 Cyanate lyase C-terminal domain CJO93_RS24875 PF04966 Carbohydrate-selective porin, OprB family CJO93_RS24880 PF13407 Periplasmic binding protein domain CJO93_RS24885 PF00005 ABC transporter CJO93_RS24890 PF02653 Branched-chain amino acid transport system / permease component CJO93_RS24895 PF01370 NAD dependent epimerase/dehydratase family CJO93_RS24900 PF00356 Bacterial regulatory proteins, lacI family CJO93_RS24910 PF12833 Helix-turn-helix domain CJO93_RS24930 PF03929 PepSY-associated TM region CJO93_RS24945 PF01739 CheR methyltransferase, SAM binding domain CJO93_RS25000 PF00550 Phosphopantetheine attachment site CJO93_RS25010 PF03144 Elongation factor Tu domain 2 CJO93_RS25010 PF16658 Class II release factor RF3, C-terminal domain CJO93_RS25010 PF00009 Elongation factor Tu GTP binding domain CJO93_RS25040 PF00072 Response regulator receiver domain CJO93_RS25040 PF02954 Bacterial regulatory protein, Fis family CJO93_RS25040 PF00158 Sigma-54 interaction domain CJO93_RS25045 PF01590 GAF domain CJO93_RS25045 PF00158 Sigma-54 interaction domain CJO93_RS25045 PF02954 Bacterial regulatory protein, Fis family CJO93_RS25055 PF04552 Sigma-54, DNA binding domain CJO93_RS25055 PF04963 Sigma-54 factor, core binding domain CJO93_RS25055 PF00309 Sigma-54 factor, Activator interacting domain (AID) CJO93_RS25075 PF00512 His Kinase A (phospho-acceptor) domain CJO93_RS25075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO93_RS25085 PF00860 Permease family