locus-tag	class	description
CJO92_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
CJO92_RS00010	COG0592	DNA-directed DNA polymerase activity
CJO92_RS00025	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CJO92_RS00030	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
CJO92_RS00130	COG3781	membrane
CJO92_RS00150	COG0765	amino acid transport
CJO92_RS00155	COG1126	abc transporter atp-binding protein
CJO92_RS00160	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CJO92_RS00185	COG0642	Histidine kinase
CJO92_RS00195	COG2814	Major facilitator Superfamily
CJO92_RS00205	COG1959	2 iron, 2 sulfur cluster binding
CJO92_RS00210	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
CJO92_RS00230	COG0745	RESPONSE REGULATOR receiver
CJO92_RS00235	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CJO92_RS00250	COG1335	isochorismatase
CJO92_RS00255	COG2197	response regulator
CJO92_RS00260	COG2203	Gaf domain
CJO92_RS00260	COG3706	GGDEF domain
CJO92_RS00260	COG4251	negative regulation of phosphorylation
CJO92_RS00260	COG5001	Diguanylate cyclase
CJO92_RS00270	COG2205	protein histidine kinase activity
CJO92_RS00275	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
CJO92_RS00280	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
CJO92_RS00285	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
CJO92_RS00300	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
CJO92_RS00315	COG1116	anion transmembrane transporter activity
CJO92_RS00325	COG1254	Belongs to the acylphosphatase family
CJO92_RS00335	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
CJO92_RS00345	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
CJO92_RS00350	COG2894	cell division
CJO92_RS00355	COG0850	regulation of cytokinetic process
CJO92_RS00360	COG0737	Belongs to the 5'-nucleotidase family
CJO92_RS00370	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
CJO92_RS00390	COG0642	Histidine kinase
CJO92_RS00405	COG2154	pterin-4-alpha-carbinolamine dehydratase
CJO92_RS00410	COG3186	Phenylalanine-4-hydroxylase
CJO92_RS00425	COG2423	ornithine cyclodeaminase activity
CJO92_RS00430	COG3047	cAMP biosynthetic process
CJO92_RS00440	COG2217	Heavy metal translocating P-type atpase
CJO92_RS00445	COG0789	Transcriptional regulator
CJO92_RS00450	COG2267	carboxylic ester hydrolase activity
CJO92_RS00515	COG3530	Putative quorum-sensing-regulated virulence factor
CJO92_RS00540	COG0445	tRNA wobble uridine modification
CJO92_RS00545	COG0357	Ribosomal RNA small subunit methyltransferase G
CJO92_RS00550	COG1192	Involved in chromosome partitioning
CJO92_RS00555	COG1475	DNA binding
CJO92_RS00565	COG0356	it plays a direct role in the translocation of protons across the membrane
CJO92_RS00575	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
CJO92_RS00580	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CJO92_RS00585	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
CJO92_RS00590	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
CJO92_RS00595	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
CJO92_RS00600	COG0355	proton-transporting ATP synthase activity, rotational mechanism
CJO92_RS00615	COG1832	CoA-binding protein
CJO92_RS00640	COG0840	transmembrane signaling receptor activity
CJO92_RS00660	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
CJO92_RS00665	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CJO92_RS00670	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
CJO92_RS00670	COG0506	proline dehydrogenase activity
CJO92_RS00670	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
CJO92_RS00675	COG0683	leucine binding
CJO92_RS00685	COG2170	ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity
CJO92_RS00695	COG1297	OPT oligopeptide transporter protein
CJO92_RS00705	COG1760	l-serine dehydratase
CJO92_RS00710	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
CJO92_RS00710	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
CJO92_RS00715	COG0509	glycine decarboxylation via glycine cleavage system
CJO92_RS00720	COG0404	The glycine cleavage system catalyzes the degradation of glycine
CJO92_RS00735	COG0210	DNA helicase
CJO92_RS00760	COG2197	response regulator
CJO92_RS00765	COG3916	Acyl-homoserine-lactone synthase
CJO92_RS00775	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CJO92_RS00785	COG2084	Dehydrogenase
CJO92_RS00795	COG3622	Belongs to the hyi family
CJO92_RS00800	COG3960	tartronate-semialdehyde synthase activity
CJO92_RS00805	COG0583	DNA-binding transcription factor activity
CJO92_RS00820	COG1739	Uncharacterized protein family UPF0029
CJO92_RS00830	COG1301	dicarboxylic acid transport
CJO92_RS00835	COG4266	Belongs to the allantoicase family
CJO92_RS00845	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CJO92_RS00870	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CJO92_RS00885	COG0792	nuclease activity
CJO92_RS00900	COG0446	pyridine nucleotide-disulphide oxidoreductase
CJO92_RS00910	COG4654	Cytochrome c, class I
CJO92_RS00935	COG2010	Cytochrome c
CJO92_RS00940	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CJO92_RS00945	COG0737	Belongs to the 5'-nucleotidase family
CJO92_RS01000	COG0493	'glutamate synthase
CJO92_RS01025	COG1733	regulation of RNA biosynthetic process
CJO92_RS01045	COG0778	Nitroreductase
CJO92_RS01100	COG1560	Kdo2-lipid A biosynthetic process
CJO92_RS01160	COG5001	Diguanylate cyclase
CJO92_RS01160	COG4251	negative regulation of phosphorylation
CJO92_RS01160	COG2203	Gaf domain
CJO92_RS01160	COG3706	GGDEF domain
CJO92_RS01175	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CJO92_RS01190	COG1028	Short-chain dehydrogenase reductase Sdr
CJO92_RS01200	COG0840	transmembrane signaling receptor activity
CJO92_RS01225	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CJO92_RS01240	COG3284	Transcriptional regulator
CJO92_RS01250	COG4303	Ethanolamine ammonia lyase large subunit
CJO92_RS01255	COG4302	ethanolamine ammonia-lyase activity
CJO92_RS01260	COG2925	Exonuclease
CJO92_RS01380	COG1522	sequence-specific DNA binding
CJO92_RS01415	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CJO92_RS01415	COG0475	glutathione-regulated potassium exporter activity
CJO92_RS01440	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CJO92_RS01450	COG0745	RESPONSE REGULATOR receiver
CJO92_RS01465	COG1414	Transcriptional regulator
CJO92_RS01470	COG2814	Major facilitator Superfamily
CJO92_RS01535	COG2197	response regulator
CJO92_RS01540	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
CJO92_RS01575	COG2814	Major facilitator Superfamily
CJO92_RS01580	COG0668	transmembrane transport
CJO92_RS01595	COG0745	RESPONSE REGULATOR receiver
CJO92_RS01600	COG2205	protein histidine kinase activity
CJO92_RS01635	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
CJO92_RS01650	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
CJO92_RS01665	COG0395	ABC-type sugar transport system, permease component
CJO92_RS01680	COG3842	ATPase activity
CJO92_RS01690	COG1349	DNA-binding transcription factor activity
CJO92_RS01750	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
CJO92_RS01770	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
CJO92_RS01775	COG0081	regulation of translation
CJO92_RS01780	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
CJO92_RS01785	COG0222	ribosome binding
CJO92_RS01790	COG0085	RNA polymerase activity
CJO92_RS01795	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
CJO92_RS01800	COG4685	Uncharacterized protein conserved in bacteria (DUF2138)
CJO92_RS01805	COG3234	Protein of unknown function (DUF1175)
CJO92_RS01810	COG2373	Large extracellular alpha-helical protein
CJO92_RS01815	COG5445	Predicted secreted protein (DUF2300)
CJO92_RS01820	COG4676	Protein conserved in bacteria
CJO92_RS01825	COG4676	Protein conserved in bacteria
CJO92_RS01830	COG2226	methyltransferase
CJO92_RS01835	COG0514	ATP-dependent DNA helicase (RecQ)
CJO92_RS01840	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
CJO92_RS01845	COG0049	tRNA binding
CJO92_RS01855	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
CJO92_RS01860	COG0051	transcription antitermination factor activity, RNA binding
CJO92_RS01865	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
CJO92_RS01870	COG0088	Forms part of the polypeptide exit tunnel
CJO92_RS01875	COG0089	rRNA binding
CJO92_RS01880	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
CJO92_RS01885	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
CJO92_RS01890	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
CJO92_RS01895	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
CJO92_RS01900	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
CJO92_RS01905	COG0255	Belongs to the universal ribosomal protein uL29 family
CJO92_RS01910	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
CJO92_RS01915	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
CJO92_RS01920	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
CJO92_RS01925	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
CJO92_RS01930	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
CJO92_RS01935	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
CJO92_RS01940	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
CJO92_RS01945	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
CJO92_RS01950	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
CJO92_RS01955	COG1841	ribosomal large subunit assembly
CJO92_RS01960	COG0200	Binds to the 23S rRNA
CJO92_RS01965	COG0201	protein transport
CJO92_RS01975	COG0257	Belongs to the bacterial ribosomal protein bL36 family
CJO92_RS01980	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
CJO92_RS01985	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
CJO92_RS01990	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
CJO92_RS01995	COG0202	RNA polymerase activity
CJO92_RS02000	COG0203	ribosomal protein L17
CJO92_RS02010	COG4232	protein-disulfide reductase activity
CJO92_RS02020	COG0218	Necessary for normal cell division and for the maintenance of normal septation
CJO92_RS02030	COG1333	cytochrome c biogenesis protein
CJO92_RS02035	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CJO92_RS02055	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
CJO92_RS02060	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
CJO92_RS02075	COG1965	Belongs to the frataxin family
CJO92_RS02110	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
CJO92_RS02115	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
CJO92_RS02120	COG0232	Belongs to the dGTPase family. Type 2 subfamily
CJO92_RS02125	COG3047	cAMP biosynthetic process
CJO92_RS02135	COG0070	glutamate synthase
CJO92_RS02135	COG0069	glutamate synthase activity
CJO92_RS02135	COG0067	glutamate synthase
CJO92_RS02150	COG1127	ABC transporter
CJO92_RS02155	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
CJO92_RS02160	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
CJO92_RS02180	COG1131	(ABC) transporter
CJO92_RS02185	COG0842	Transport permease protein
CJO92_RS02195	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
CJO92_RS02200	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
CJO92_RS02205	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
CJO92_RS02210	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CJO92_RS02215	COG0131	Imidazoleglycerol-phosphate dehydratase
CJO92_RS02220	COG2095	MarC family integral membrane protein
CJO92_RS02225	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
CJO92_RS02230	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
CJO92_RS02235	COG0107	imidazoleglycerol-phosphate synthase activity
CJO92_RS02240	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
CJO92_RS02245	COG0140	phosphoribosyl-ATP diphosphatase activity
CJO92_RS02255	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CJO92_RS02260	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CJO92_RS02265	COG0805	protein transport
CJO92_RS02270	COG3842	ATPase activity
CJO92_RS02280	COG1840	ABC-type Fe3 transport system, periplasmic component
CJO92_RS02300	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CJO92_RS02305	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CJO92_RS02310	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
CJO92_RS02315	COG1970	mechanosensitive ion channel activity
CJO92_RS02320	COG0723	plastoquinol--plastocyanin reductase activity
CJO92_RS02325	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
CJO92_RS02330	COG2857	Cytochrome c1
CJO92_RS02335	COG0625	glutathione transferase activity
CJO92_RS02340	COG2969	positive regulation of protein catabolic process
CJO92_RS02360	COG0405	Gamma-glutamyltransferase
CJO92_RS02365	COG4774	siderophore transport
CJO92_RS02370	COG3712	iron ion homeostasis
CJO92_RS02380	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
CJO92_RS02395	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
CJO92_RS02400	COG0488	(ABC) transporter
CJO92_RS02420	COG2943	transferase activity, transferring hexosyl groups
CJO92_RS02420	COG3416	Protein conserved in bacteria
CJO92_RS02425	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
CJO92_RS02440	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
CJO92_RS02445	COG2890	protein-(glutamine-N5) methyltransferase activity
CJO92_RS02455	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
CJO92_RS02460	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
CJO92_RS02470	COG0012	GTP binding
CJO92_RS02500	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CJO92_RS02510	COG0604	alcohol dehydrogenase
CJO92_RS02520	COG1289	transmembrane transporter activity
CJO92_RS02540	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
CJO92_RS02550	COG0134	indole-3-glycerol-phosphate synthase activity
CJO92_RS02555	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CJO92_RS02565	COG0512	Glutamine amidotransferase of anthranilate synthase
CJO92_RS02575	COG0546	phosphoglycolate phosphatase activity
CJO92_RS02580	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CJO92_RS02585	COG2967	ApaG domain
CJO92_RS02605	COG2050	protein possibly involved in aromatic compounds catabolism
CJO92_RS02610	COG1024	Enoyl-CoA hydratase
CJO92_RS02615	COG1024	Enoyl-CoA hydratase
CJO92_RS02650	COG1473	amidohydrolase
CJO92_RS02655	COG0747	negative chemotaxis
CJO92_RS02660	COG0601	transmembrane transport
CJO92_RS02665	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CJO92_RS02675	COG4608	Belongs to the ABC transporter superfamily
CJO92_RS02680	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CJO92_RS02690	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CJO92_RS02690	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CJO92_RS02695	COG1105	Belongs to the carbohydrate kinase PfkB family
CJO92_RS02700	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CJO92_RS02700	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
CJO92_RS02705	COG1609	Transcriptional regulator
CJO92_RS02710	COG0243	molybdopterin cofactor binding
CJO92_RS02720	COG0318	PFAM AMP-dependent synthetase and ligase
CJO92_RS02725	COG0477	Major facilitator Superfamily
CJO92_RS02730	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CJO92_RS02735	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
CJO92_RS02740	COG2001	Belongs to the MraZ family
CJO92_RS02745	COG0275	rRNA processing
CJO92_RS02760	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
CJO92_RS02765	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
CJO92_RS02770	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CJO92_RS02775	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
CJO92_RS02785	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
CJO92_RS02790	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
CJO92_RS02795	COG1181	Belongs to the D-alanine--D-alanine ligase family
CJO92_RS02800	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
CJO92_RS02815	COG0678	peroxiredoxin activity
CJO92_RS02820	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
CJO92_RS02830	COG0739	heme binding
CJO92_RS02835	COG0653	protein targeting
CJO92_RS02840	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
CJO92_RS02850	COG0494	nUDIX hydrolase
CJO92_RS02855	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
CJO92_RS02860	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
CJO92_RS02865	COG0237	dephospho-CoA kinase activity
CJO92_RS02875	COG1459	type II secretion system
CJO92_RS02885	COG4536	flavin adenine dinucleotide binding
CJO92_RS02895	COG0142	geranyltranstransferase activity
CJO92_RS02900	COG0261	This protein binds to 23S rRNA in the presence of protein L20
CJO92_RS02905	COG0211	Belongs to the bacterial ribosomal protein bL27 family
CJO92_RS02910	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
CJO92_RS02915	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
CJO92_RS02925	COG0494	nUDIX hydrolase
CJO92_RS02930	COG0442	prolyl-tRNA aminoacylation
CJO92_RS02935	COG0741	lytic transglycosylase activity
CJO92_RS02945	COG2095	MarC family integral membrane protein
CJO92_RS02950	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
CJO92_RS02955	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CJO92_RS02960	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CJO92_RS02980	COG3023	N-Acetylmuramoyl-L-alanine amidase
CJO92_RS03000	COG5006	permease, DMT superfamily
CJO92_RS03005	COG1522	sequence-specific DNA binding
CJO92_RS03015	COG0840	transmembrane signaling receptor activity
CJO92_RS03060	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CJO92_RS03065	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
CJO92_RS03075	COG2264	protein methyltransferase activity
CJO92_RS03085	COG0511	ligase activity, forming carbon-carbon bonds
CJO92_RS03090	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
CJO92_RS03095	COG3118	belongs to the thioredoxin family
CJO92_RS03105	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
CJO92_RS03110	COG3150	esterase
CJO92_RS03115	COG3161	chorismate lyase activity
CJO92_RS03120	COG0557	exoribonuclease II activity
CJO92_RS03130	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
CJO92_RS03135	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CJO92_RS03150	COG0284	orotidine-5'-phosphate decarboxylase activity
CJO92_RS03160	COG1546	Belongs to the CinA family
CJO92_RS03160	COG1058	Belongs to the CinA family
CJO92_RS03165	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
CJO92_RS03175	COG0281	malic enzyme
CJO92_RS03175	COG0280	phosphate acetyltransferase
CJO92_RS03195	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CJO92_RS03205	COG0583	DNA-binding transcription factor activity
CJO92_RS03210	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CJO92_RS03225	COG1129	ABC transporter
CJO92_RS03245	COG1028	Short-chain dehydrogenase reductase Sdr
CJO92_RS03250	COG0800	Aldolase
CJO92_RS03255	COG4948	Mandelate Racemase Muconate Lactonizing
CJO92_RS03260	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
CJO92_RS03265	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CJO92_RS03275	COG0583	DNA-binding transcription factor activity
CJO92_RS03280	COG0735	belongs to the Fur family
CJO92_RS03285	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CJO92_RS03290	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
CJO92_RS03295	COG0495	leucyl-tRNA aminoacylation
CJO92_RS03305	COG1466	dna polymerase III delta subunit
CJO92_RS03310	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
CJO92_RS03315	COG1981	membrane
CJO92_RS03325	COG2204	response regulator
CJO92_RS03330	COG4191	Histidine kinase
CJO92_RS03335	COG4191	Histidine kinase
CJO92_RS03360	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
CJO92_RS03400	COG0482	sulfurtransferase activity
CJO92_RS03405	COG0069	glutamate synthase activity
CJO92_RS03410	COG0625	glutathione transferase activity
CJO92_RS03420	COG3038	cytochrome b561
CJO92_RS03425	COG2353	YceI-like domain
CJO92_RS03430	COG2353	YceI-like domain
CJO92_RS03435	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CJO92_RS03440	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CJO92_RS03450	COG0343	queuine tRNA-ribosyltransferase activity
CJO92_RS03455	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
CJO92_RS03490	COG1278	Cold shock
CJO92_RS03580	COG0753	catalase activity
CJO92_RS03590	COG0783	Belongs to the Dps family
CJO92_RS03595	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
CJO92_RS03655	COG0386	Belongs to the glutathione peroxidase family
CJO92_RS03675	COG1346	cytolysis
CJO92_RS03680	COG1380	Effector of murein hydrolase LrgA
CJO92_RS03685	COG0247	lactate metabolic process
CJO92_RS03690	COG0277	FAD linked oxidase domain protein
CJO92_RS03695	COG0277	FAD linked oxidase domain protein
CJO92_RS03700	COG0583	DNA-binding transcription factor activity
CJO92_RS03705	COG0277	FAD linked oxidase domain protein
CJO92_RS03710	COG2096	Adenosyltransferase
CJO92_RS03715	COG0668	transmembrane transport
CJO92_RS03725	COG3550	peptidyl-serine autophosphorylation
CJO92_RS03730	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
CJO92_RS03735	COG0312	modulator of DNA gyrase
CJO92_RS03740	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CJO92_RS03750	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
CJO92_RS03765	COG1404	Belongs to the peptidase S8 family
CJO92_RS03775	COG0497	DNA recombination
CJO92_RS03780	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
CJO92_RS03785	COG1420	regulation of RNA biosynthetic process
CJO92_RS03795	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
CJO92_RS03800	COG2986	histidine ammonia-lyase
CJO92_RS03805	COG0010	Belongs to the arginase family
CJO92_RS03810	COG1228	amidohydrolase
CJO92_RS03815	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
CJO92_RS03835	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
CJO92_RS03845	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CJO92_RS03850	COG0443	Heat shock 70 kDa protein
CJO92_RS03855	COG0484	heat shock protein binding
CJO92_RS03860	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
CJO92_RS03860	COG0512	Glutamine amidotransferase of anthranilate synthase
CJO92_RS03870	COG4662	Binding-protein-dependent transport system inner membrane component
CJO92_RS03875	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
CJO92_RS03885	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
CJO92_RS03890	COG0617	tRNA 3'-terminal CCA addition
CJO92_RS03900	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
CJO92_RS03905	COG0628	permease
CJO92_RS03910	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
CJO92_RS03925	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CJO92_RS03925	COG2169	Transcriptional regulator
CJO92_RS03945	COG2169	Transcriptional regulator
CJO92_RS03945	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CJO92_RS03955	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
CJO92_RS03960	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
CJO92_RS03965	COG3008	intermembrane lipid transfer
CJO92_RS03980	COG0586	Pfam SNARE associated Golgi protein
CJO92_RS03990	COG0728	peptidoglycan biosynthetic process
CJO92_RS03995	COG0268	Binds directly to 16S ribosomal RNA
CJO92_RS04005	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
CJO92_RS04010	COG0137	argininosuccinate synthase activity
CJO92_RS04015	COG3123	guanosine phosphorylase activity
CJO92_RS04025	COG0812	UDP-N-acetylmuramate dehydrogenase activity
CJO92_RS04030	COG1666	GTP binding
CJO92_RS04040	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
CJO92_RS04045	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CJO92_RS04050	COG4974	Belongs to the 'phage' integrase family
CJO92_RS04055	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CJO92_RS04065	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
CJO92_RS04070	COG0802	atpase or kinase
CJO92_RS04075	COG0860	N-Acetylmuramoyl-L-alanine amidase
CJO92_RS04085	COG0583	DNA-binding transcription factor activity
CJO92_RS04095	COG0563	adenylate kinase activity
CJO92_RS04100	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
CJO92_RS04105	COG2835	tetraacyldisaccharide 4'-kinase activity
CJO92_RS04110	COG1663	tetraacyldisaccharide 4'-kinase activity
CJO92_RS04115	COG0848	biopolymer transport protein
CJO92_RS04120	COG0811	peptide transport
CJO92_RS04125	COG1570	exodeoxyribonuclease VII activity
CJO92_RS04130	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
CJO92_RS04135	COG1028	Short-chain dehydrogenase reductase Sdr
CJO92_RS04175	COG2610	gluconate transmembrane transporter activity
CJO92_RS04240	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
CJO92_RS04245	COG1028	Short-chain dehydrogenase reductase Sdr
CJO92_RS04250	COG2321	neutral zinc metallopeptidase
CJO92_RS04265	COG2259	Doxx family
CJO92_RS04280	COG0583	DNA-binding transcription factor activity
CJO92_RS04300	COG1858	cytochrome C peroxidase
CJO92_RS04340	COG1278	Cold shock
CJO92_RS04345	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
CJO92_RS04350	COG0542	response to heat
CJO92_RS04355	COG0756	dUTP diphosphatase activity
CJO92_RS04360	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CJO92_RS04365	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CJO92_RS04375	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
CJO92_RS04380	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
CJO92_RS04385	COG0196	riboflavin kinase activity
CJO92_RS04390	COG5002	protein histidine kinase activity
CJO92_RS04390	COG0784	Response regulator, receiver
CJO92_RS04400	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CJO92_RS04405	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CJO92_RS04405	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
CJO92_RS04415	COG1511	domain protein
CJO92_RS04415	COG3264	Mechanosensitive ion channel
CJO92_RS04425	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
CJO92_RS04435	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
CJO92_RS04440	COG0267	Belongs to the bacterial ribosomal protein bL33 family
CJO92_RS04445	COG0227	Belongs to the bacterial ribosomal protein bL28 family
CJO92_RS04450	COG2003	Belongs to the UPF0758 family
CJO92_RS04455	COG1047	Peptidyl-prolyl cis-trans
CJO92_RS04460	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
CJO92_RS04495	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CJO92_RS04530	COG2084	Dehydrogenase
CJO92_RS04540	COG0583	DNA-binding transcription factor activity
CJO92_RS04545	COG0730	response to heat
CJO92_RS04550	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CJO92_RS04560	COG0175	sulfate reduction
CJO92_RS04570	COG2895	sulfate adenylyltransferase (ATP) activity
CJO92_RS04575	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
CJO92_RS04575	COG1648	precorrin-2 dehydrogenase activity
CJO92_RS04600	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
CJO92_RS04615	COG0129	dihydroxy-acid dehydratase activity
CJO92_RS04620	COG0583	DNA-binding transcription factor activity
CJO92_RS04625	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
CJO92_RS04655	COG4206	TonB-dependent receptor
CJO92_RS04665	COG1120	ATPase activity
CJO92_RS04670	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
CJO92_RS04675	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
CJO92_RS04685	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CJO92_RS04695	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
CJO92_RS04705	COG1492	cobalamin metabolic process
CJO92_RS04715	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
CJO92_RS04720	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
CJO92_RS04735	COG2911	Protein conserved in bacteria
CJO92_RS04745	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CJO92_RS04745	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CJO92_RS04750	COG2885	chlorophyll binding
CJO92_RS04750	COG3047	cAMP biosynthetic process
CJO92_RS04755	COG0489	protein tyrosine kinase activity
CJO92_RS04785	COG3383	formate dehydrogenase (NAD+) activity
CJO92_RS04785	COG0243	molybdopterin cofactor binding
CJO92_RS04790	COG0437	4 iron, 4 sulfur cluster binding
CJO92_RS04810	COG2032	superoxide dismutase activity
CJO92_RS04815	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
CJO92_RS04820	COG0717	Belongs to the dCTP deaminase family
CJO92_RS04850	COG0165	Argininosuccinate lyase
CJO92_RS04870	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
CJO92_RS04875	COG0181	hydroxymethylbilane synthase activity
CJO92_RS04900	COG2271	Major facilitator Superfamily
CJO92_RS04915	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
CJO92_RS04955	COG0492	ferredoxin-NADP+ reductase activity
CJO92_RS04960	COG1674	ftsk spoiiie
CJO92_RS04965	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
CJO92_RS04975	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CJO92_RS04980	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
CJO92_RS04990	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CJO92_RS05015	COG2207	Transcriptional regulator
CJO92_RS05030	COG2264	protein methyltransferase activity
CJO92_RS05060	COG0789	Transcriptional regulator
CJO92_RS05065	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CJO92_RS05070	COG1253	flavin adenine dinucleotide binding
CJO92_RS05110	COG0644	oxidoreductase
CJO92_RS05120	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CJO92_RS05135	COG0765	amino acid transport
CJO92_RS05140	COG0765	amino acid transport
CJO92_RS05145	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CJO92_RS05155	COG1414	Transcriptional regulator
CJO92_RS05165	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
CJO92_RS05170	COG0183	Belongs to the thiolase family
CJO92_RS05180	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CJO92_RS05185	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CJO92_RS05200	COG0411	ABC transporter
CJO92_RS05210	COG0683	leucine binding
CJO92_RS05225	COG2342	PFAM TM1410 hypothetical-related protein
CJO92_RS05235	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
CJO92_RS05250	COG0525	valine-tRNA ligase activity
CJO92_RS05255	COG0210	DNA helicase
CJO92_RS05265	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
CJO92_RS05275	COG1611	Belongs to the LOG family
CJO92_RS05280	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CJO92_RS05280	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CJO92_RS05285	COG1252	NADH dehydrogenase
CJO92_RS05290	COG0412	Dienelactone hydrolase
CJO92_RS05315	COG1722	exodeoxyribonuclease VII activity
CJO92_RS05320	COG0142	geranyltranstransferase activity
CJO92_RS05325	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
CJO92_RS05330	COG1469	GTP cyclohydrolase I activity
CJO92_RS05335	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
CJO92_RS05340	COG2081	HI0933 family
CJO92_RS05345	COG1610	YqeY-like protein
CJO92_RS05375	COG0426	domain, Protein
CJO92_RS05375	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CJO92_RS05380	COG0513	Belongs to the DEAD box helicase family
CJO92_RS05385	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CJO92_RS05390	COG0583	DNA-binding transcription factor activity
CJO92_RS05395	COG1741	Belongs to the pirin family
CJO92_RS05405	COG1054	Belongs to the UPF0176 family
CJO92_RS05435	COG1132	(ABC) transporter
CJO92_RS05450	COG1530	ribonuclease E activity
CJO92_RS05455	COG0424	maF-like protein
CJO92_RS05460	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
CJO92_RS05465	COG0799	negative regulation of ribosome biogenesis
CJO92_RS05475	COG0408	coproporphyrinogen oxidase activity
CJO92_RS05480	COG0151	Belongs to the GarS family
CJO92_RS05485	COG0217	transcriptional regulatory protein
CJO92_RS05490	COG0433	COG0433 Predicted ATPase
CJO92_RS05495	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
CJO92_RS05500	COG0697	spore germination
CJO92_RS05505	COG1028	Short-chain dehydrogenase reductase Sdr
CJO92_RS05510	COG1803	Methylglyoxal synthase
CJO92_RS05540	COG1513	Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide
CJO92_RS05545	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CJO92_RS05555	COG0402	S-adenosylhomocysteine deaminase activity
CJO92_RS05565	COG1079	Belongs to the binding-protein-dependent transport system permease family
CJO92_RS05570	COG4603	Belongs to the binding-protein-dependent transport system permease family
CJO92_RS05575	COG3845	ABC transporter
CJO92_RS05580	COG2814	Major facilitator Superfamily
CJO92_RS05585	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
CJO92_RS05590	COG1984	allophanate hydrolase subunit 2
CJO92_RS05595	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
CJO92_RS05610	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
CJO92_RS05615	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
CJO92_RS05630	COG1234	tRNA 3'-trailer cleavage
CJO92_RS05640	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CJO92_RS05645	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
CJO92_RS05650	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
CJO92_RS05660	COG0515	serine threonine protein kinase
CJO92_RS05660	COG3064	Membrane
CJO92_RS05660	COG4991	sh3 domain protein
CJO92_RS05665	COG1561	YicC-like family, N-terminal region
CJO92_RS05670	COG0194	GDP metabolic process
CJO92_RS05675	COG1758	RNA polymerase activity
CJO92_RS05680	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CJO92_RS05715	COG1652	LysM domain
CJO92_RS05735	COG1459	type II secretion system
CJO92_RS05750	COG2165	general secretion pathway protein
CJO92_RS05780	COG3209	COG3209 Rhs family protein
CJO92_RS05810	COG2985	domain, Protein
CJO92_RS05815	COG0281	malic enzyme
CJO92_RS05820	COG1304	FMN binding
CJO92_RS05830	COG4191	Histidine kinase
CJO92_RS05840	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
CJO92_RS05850	COG0582	viral genome integration into host DNA
CJO92_RS05900	COG3501	Rhs element vgr protein
CJO92_RS05910	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
CJO92_RS05915	COG0308	aminopeptidase N
CJO92_RS05925	COG0280	phosphate acetyltransferase
CJO92_RS05925	COG0281	malic enzyme
CJO92_RS05950	COG2233	PERMEase
CJO92_RS05960	COG2351	hydroxyisourate hydrolase activity
CJO92_RS05980	COG1126	abc transporter atp-binding protein
CJO92_RS05985	COG0765	amino acid transport
CJO92_RS05990	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CJO92_RS05995	COG1522	sequence-specific DNA binding
CJO92_RS06005	COG0251	oxidation-reduction process
CJO92_RS06020	COG2119	membrane
CJO92_RS06025	COG0402	S-adenosylhomocysteine deaminase activity
CJO92_RS06030	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
CJO92_RS06040	COG1529	Aldehyde oxidase and xanthine dehydrogenase
CJO92_RS06065	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
CJO92_RS06085	COG1309	transcriptional regulator
CJO92_RS06095	COG0438	transferase activity, transferring glycosyl groups
CJO92_RS06130	COG0028	Belongs to the TPP enzyme family
CJO92_RS06140	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
CJO92_RS06155	COG0688	phosphatidylethanolamine metabolic process
CJO92_RS06160	COG1183	phosphatidylcholine synthase activity
CJO92_RS06165	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CJO92_RS06175	COG0683	leucine binding
CJO92_RS06180	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
CJO92_RS06185	COG1185	polyribonucleotide nucleotidyltransferase activity
CJO92_RS06200	COG0149	triose-phosphate isomerase activity
CJO92_RS06205	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CJO92_RS06215	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CJO92_RS06220	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CJO92_RS06225	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CJO92_RS06230	COG0649	NAD binding
CJO92_RS06245	COG1034	ATP synthesis coupled electron transport
CJO92_RS06250	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
CJO92_RS06255	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CJO92_RS06265	COG0713	ATP synthesis coupled electron transport
CJO92_RS06280	COG1007	ATP synthesis coupled electron transport
CJO92_RS06300	COG1960	acyl-CoA dehydrogenase activity
CJO92_RS06305	COG1960	acyl-CoA dehydrogenase activity
CJO92_RS06310	COG2030	dehydratase
CJO92_RS06310	COG1012	belongs to the aldehyde dehydrogenase family
CJO92_RS06345	COG0829	nickel cation binding
CJO92_RS06350	COG0831	urea catabolic process
CJO92_RS06360	COG0832	Belongs to the urease beta subunit family
CJO92_RS06365	COG0804	urea catabolic process
CJO92_RS06370	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
CJO92_RS06375	COG0830	nickel cation binding
CJO92_RS06380	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
CJO92_RS06405	COG0625	glutathione transferase activity
CJO92_RS06425	COG0583	DNA-binding transcription factor activity
CJO92_RS06450	COG1024	Enoyl-CoA hydratase
CJO92_RS06455	COG1250	3-hydroxyacyl-CoA dehydrogenase
CJO92_RS06460	COG0625	glutathione transferase activity
CJO92_RS06465	COG0436	Aminotransferase
CJO92_RS06475	COG3022	response to hydroperoxide
CJO92_RS06480	COG2866	Carboxypeptidase
CJO92_RS06490	COG0747	negative chemotaxis
CJO92_RS06505	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
CJO92_RS06535	COG0039	L-malate dehydrogenase activity
CJO92_RS06540	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CJO92_RS06550	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
CJO92_RS06555	COG1053	succinate dehydrogenase
CJO92_RS06560	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CJO92_RS06565	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
CJO92_RS06570	COG0372	Belongs to the citrate synthase family
CJO92_RS06575	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
CJO92_RS06580	COG0066	3-isopropylmalate dehydratase activity
CJO92_RS06585	COG0473	3-isopropylmalate dehydrogenase activity
CJO92_RS06600	COG0101	tRNA pseudouridine synthase activity
CJO92_RS06605	COG0135	phosphoribosylanthranilate isomerase activity
CJO92_RS06610	COG0133	tryptophan synthase activity
CJO92_RS06620	COG0159	tryptophan synthase activity
CJO92_RS06625	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
CJO92_RS06630	COG0285	dihydrofolate synthase activity
CJO92_RS06650	COG0842	Transport permease protein
CJO92_RS06685	COG3193	protein, possibly involved in utilization of glycolate and propanediol
CJO92_RS06730	COG1301	dicarboxylic acid transport
CJO92_RS06735	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
CJO92_RS06750	COG0697	spore germination
CJO92_RS06755	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CJO92_RS06760	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CJO92_RS06790	COG3209	COG3209 Rhs family protein
CJO92_RS06820	COG2197	response regulator
CJO92_RS06825	COG0840	transmembrane signaling receptor activity
CJO92_RS06865	COG0747	negative chemotaxis
CJO92_RS06870	COG4608	Belongs to the ABC transporter superfamily
CJO92_RS06875	COG0444	Belongs to the ABC transporter superfamily
CJO92_RS06885	COG0601	transmembrane transport
CJO92_RS06890	COG2072	flavoprotein involved in K transport
CJO92_RS06935	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CJO92_RS06960	COG2304	oxidoreductase activity
CJO92_RS06975	COG0589	response to stress
CJO92_RS07025	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CJO92_RS07035	COG2197	response regulator
CJO92_RS07040	COG0071	Belongs to the small heat shock protein (HSP20) family
CJO92_RS07045	COG0328	RNA-DNA hybrid ribonuclease activity
CJO92_RS07050	COG2226	methyltransferase
CJO92_RS07055	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CJO92_RS07060	COG1388	LysM domain
CJO92_RS07060	COG0741	lytic transglycosylase activity
CJO92_RS07065	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CJO92_RS07070	COG0505	Belongs to the CarA family
CJO92_RS07080	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
CJO92_RS07085	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CJO92_RS07095	COG1534	Rna-binding protein
CJO92_RS07100	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
CJO92_RS07105	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CJO92_RS07110	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
CJO92_RS07115	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CJO92_RS07120	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
CJO92_RS07125	COG0573	inorganic phosphate transmembrane transporter activity
CJO92_RS07130	COG0581	inorganic phosphate transmembrane transporter activity
CJO92_RS07135	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
CJO92_RS07155	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
CJO92_RS07160	COG0248	Ppx GppA phosphatase
CJO92_RS07190	COG0640	Transcriptional regulator
CJO92_RS07200	COG5001	Diguanylate cyclase
CJO92_RS07200	COG3300	MHYT domain
CJO92_RS07210	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
CJO92_RS07225	COG1615	UPF0182 protein
CJO92_RS07240	COG3842	ATPase activity
CJO92_RS07245	COG1840	ABC-type Fe3 transport system, periplasmic component
CJO92_RS07260	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CJO92_RS07265	COG0656	L-ascorbic acid biosynthetic process
CJO92_RS07340	COG0277	FAD linked oxidase domain protein
CJO92_RS07355	COG1295	ribonuclease BN
CJO92_RS07380	COG0477	Major facilitator Superfamily
CJO92_RS07385	COG0545	Peptidyl-prolyl cis-trans isomerase
CJO92_RS07390	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
CJO92_RS07400	COG1028	Short-chain dehydrogenase reductase Sdr
CJO92_RS07405	COG4566	intracellular signal transduction
CJO92_RS07420	COG1028	Short-chain dehydrogenase reductase Sdr
CJO92_RS07430	COG0251	oxidation-reduction process
CJO92_RS07435	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CJO92_RS07445	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
CJO92_RS07450	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
CJO92_RS07455	COG0291	Belongs to the bacterial ribosomal protein bL35 family
CJO92_RS07460	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
CJO92_RS07465	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
CJO92_RS07470	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CJO92_RS07470	COG0072	phenylalanine-tRNA ligase activity
CJO92_RS07475	COG0776	regulation of translation
CJO92_RS07510	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CJO92_RS07515	COG0531	amino acid
CJO92_RS07540	COG1846	Transcriptional regulator
CJO92_RS07550	COG0402	S-adenosylhomocysteine deaminase activity
CJO92_RS07555	COG0339	signal peptide processing
CJO92_RS07560	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
CJO92_RS07565	COG4566	intracellular signal transduction
CJO92_RS07580	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
CJO92_RS07585	COG0508	dehydrogenase complex catalyzes the overall conversion of
CJO92_RS07595	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CJO92_RS07610	COG0123	including yeast histone deacetylase and acetoin utilization protein
CJO92_RS07620	COG0824	Thioesterase
CJO92_RS07635	COG1414	Transcriptional regulator
CJO92_RS07660	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
CJO92_RS07665	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
CJO92_RS07680	COG0167	dihydroorotate dehydrogenase activity
CJO92_RS07690	COG3158	transport of potassium into the cell
CJO92_RS07705	COG2183	response to ionizing radiation
CJO92_RS07720	COG1199	ATP-dependent helicase activity
CJO92_RS07730	COG0564	pseudouridine synthase activity
CJO92_RS07745	COG3243	poly(R)-hydroxyalkanoic acid synthase
CJO92_RS07750	COG0183	Belongs to the thiolase family
CJO92_RS07755	COG1028	Short-chain dehydrogenase reductase Sdr
CJO92_RS07765	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CJO92_RS07770	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CJO92_RS07775	COG0183	Belongs to the thiolase family
CJO92_RS07785	COG0626	cystathionine gamma-synthase activity
CJO92_RS07790	COG0560	Phosphoserine phosphatase
CJO92_RS07800	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CJO92_RS07805	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
CJO92_RS07810	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
CJO92_RS07815	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CJO92_RS07820	COG0450	alkyl hydroperoxide reductase
CJO92_RS07850	COG1562	ergosterol biosynthetic process
CJO92_RS07855	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CJO92_RS07875	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CJO92_RS07875	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
CJO92_RS07880	COG0544	peptidyl-prolyl cis-trans isomerase activity
CJO92_RS07885	COG0740	serine-type endopeptidase activity
CJO92_RS07890	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
CJO92_RS07895	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
CJO92_RS07900	COG0776	regulation of translation
CJO92_RS07915	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CJO92_RS07930	COG4181	ATPase activity
CJO92_RS07935	COG0166	Belongs to the GPI family
CJO92_RS07940	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CJO92_RS07950	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CJO92_RS07950	COG0047	phosphoribosylformylglycinamidine synthase activity
CJO92_RS07970	COG0535	radical SAM domain protein
CJO92_RS07975	COG0583	DNA-binding transcription factor activity
CJO92_RS07990	COG1176	ABC-type spermidine putrescine transport system, permease component I
CJO92_RS08000	COG3842	ATPase activity
CJO92_RS08005	COG0642	Histidine kinase
CJO92_RS08020	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
CJO92_RS08035	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CJO92_RS08045	COG2917	probably involved in intracellular septation
CJO92_RS08050	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CJO92_RS08055	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
CJO92_RS08060	COG0318	PFAM AMP-dependent synthetase and ligase
CJO92_RS08105	COG0833	amino acid
CJO92_RS08110	COG0833	amino acid
CJO92_RS08115	COG1024	Enoyl-CoA hydratase
CJO92_RS08115	COG1250	3-hydroxyacyl-CoA dehydrogenase
CJO92_RS08120	COG1335	isochorismatase
CJO92_RS08125	COG0183	Belongs to the thiolase family
CJO92_RS08130	COG1960	acyl-CoA dehydrogenase activity
CJO92_RS08135	COG1028	Short-chain dehydrogenase reductase Sdr
CJO92_RS08150	COG2130	NADP-dependent
CJO92_RS08170	COG0596	Alpha beta hydrolase
CJO92_RS08175	COG1454	alcohol dehydrogenase
CJO92_RS08190	COG0456	acetyltransferase
CJO92_RS08200	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CJO92_RS08220	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
CJO92_RS08225	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
CJO92_RS08230	COG0470	DNA polymerase III
CJO92_RS08240	COG0084	hydrolase, TatD family'
CJO92_RS08250	COG1262	PFAM Formylglycine-generating sulfatase enzyme
CJO92_RS08255	COG1609	Transcriptional regulator
CJO92_RS08260	COG1840	ABC-type Fe3 transport system, periplasmic component
CJO92_RS08270	COG4208	sulfate ABC transporter
CJO92_RS08275	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
CJO92_RS08280	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
CJO92_RS08340	COG2814	Major facilitator Superfamily
CJO92_RS08410	COG2165	general secretion pathway protein
CJO92_RS08415	COG2165	general secretion pathway protein
CJO92_RS08465	COG0739	heme binding
CJO92_RS08465	COG0741	lytic transglycosylase activity
CJO92_RS08465	COG1196	nuclear chromosome segregation
CJO92_RS08495	COG2801	Transposase and inactivated derivatives
CJO92_RS08515	COG2226	methyltransferase
CJO92_RS08515	COG3433	isochorismatase activity
CJO92_RS08515	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CJO92_RS08525	COG2375	cellular response to nickel ion
CJO92_RS08525	COG1132	(ABC) transporter
CJO92_RS08530	COG1132	(ABC) transporter
CJO92_RS08530	COG2375	cellular response to nickel ion
CJO92_RS08535	COG4771	TonB-dependent receptor
CJO92_RS08540	COG3433	isochorismatase activity
CJO92_RS08540	COG2226	methyltransferase
CJO92_RS08540	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CJO92_RS08575	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
CJO92_RS08580	COG0156	8-amino-7-oxononanoate synthase activity
CJO92_RS08595	COG1028	Short-chain dehydrogenase reductase Sdr
CJO92_RS08600	COG0633	Ferredoxin
CJO92_RS08600	COG0543	2 iron, 2 sulfur cluster binding
CJO92_RS08605	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
CJO92_RS08610	COG4638	Rieske (2fe-2S)
CJO92_RS08620	COG4829	muconolactone delta-isomerase
CJO92_RS08625	COG4948	Mandelate Racemase Muconate Lactonizing
CJO92_RS08630	COG0583	DNA-binding transcription factor activity
CJO92_RS08660	COG0583	DNA-binding transcription factor activity
CJO92_RS08665	COG3045	CreA protein
CJO92_RS08700	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
CJO92_RS08705	COG1022	Amp-dependent synthetase and ligase
CJO92_RS08705	COG3320	Male sterility
CJO92_RS08715	COG0840	transmembrane signaling receptor activity
CJO92_RS08725	COG3387	PFAM Glycoside hydrolase 15-related
CJO92_RS08750	COG0488	(ABC) transporter
CJO92_RS08755	COG1619	proteins homologs of microcin C7 resistance protein MccF
CJO92_RS08765	COG0720	synthase
CJO92_RS08770	COG0602	queuosine metabolic process
CJO92_RS08780	COG3550	peptidyl-serine autophosphorylation
CJO92_RS08805	COG3485	protocatechuate 3,4-dioxygenase
CJO92_RS08810	COG3485	protocatechuate 3,4-dioxygenase
CJO92_RS08815	COG0583	DNA-binding transcription factor activity
CJO92_RS08860	COG2948	multi-organism process
CJO92_RS08870	COG3701	Conjugal transfer protein
CJO92_RS08890	COG3451	type IV secretory pathway VirB4
CJO92_RS08905	COG4962	Type ii secretion system protein e
CJO92_RS08925	COG0583	DNA-binding transcription factor activity
CJO92_RS08945	COG1064	alcohol dehydrogenase
CJO92_RS08965	COG0667	Aldo Keto reductase
CJO92_RS08990	COG1942	4-Oxalocrotonate Tautomerase
CJO92_RS09015	COG4959	Type IV secretory pathway protease TraF
CJO92_RS09030	COG1192	Involved in chromosome partitioning
CJO92_RS09060	COG1396	sequence-specific DNA binding
CJO92_RS09065	COG5489	Protein of unknown function (DUF736)
CJO92_RS09070	COG1475	DNA binding
CJO92_RS09100	COG2189	Belongs to the N(4) N(6)-methyltransferase family
CJO92_RS09110	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CJO92_RS09130	COG0582	viral genome integration into host DNA
CJO92_RS09135	COG0519	Catalyzes the synthesis of GMP from XMP
CJO92_RS09135	COG0518	GMP synthase (glutamine-hydrolyzing) activity
CJO92_RS09150	COG0697	spore germination
CJO92_RS09160	COG2914	Belongs to the UPF0125 (RnfH) family
CJO92_RS09165	COG2867	negative regulation of translational initiation
CJO92_RS09170	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
CJO92_RS09175	COG0330	HflC and HflK could
CJO92_RS09190	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
CJO92_RS09200	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CJO92_RS09205	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
CJO92_RS09210	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CJO92_RS09215	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CJO92_RS09220	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
CJO92_RS09225	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CJO92_RS09240	COG0750	zinc metalloprotease
CJO92_RS09245	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
CJO92_RS09250	COG0575	Belongs to the CDS family
CJO92_RS09255	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
CJO92_RS09260	COG0233	cytoplasmic translational termination
CJO92_RS09265	COG0528	UMP kinase activity
CJO92_RS09270	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
CJO92_RS09275	COG0052	Belongs to the universal ribosomal protein uS2 family
CJO92_RS09285	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
CJO92_RS09290	COG1187	pseudouridine synthase activity
CJO92_RS09300	COG0242	peptide deformylase activity
CJO92_RS09305	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
CJO92_RS09320	COG0596	Alpha beta hydrolase
CJO92_RS09335	COG2171	N-acyltransferase activity
CJO92_RS09345	COG1393	Belongs to the ArsC family
CJO92_RS09350	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CJO92_RS09360	COG2890	protein-(glutamine-N5) methyltransferase activity
CJO92_RS09400	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CJO92_RS09405	COG0601	transmembrane transport
CJO92_RS09410	COG0747	negative chemotaxis
CJO92_RS09415	COG4172	Belongs to the ABC transporter superfamily
CJO92_RS09430	COG0488	(ABC) transporter
CJO92_RS09435	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CJO92_RS09445	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
CJO92_RS09455	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CJO92_RS09460	COG0477	Major facilitator Superfamily
CJO92_RS09465	COG1573	uracil-dna glycosylase
CJO92_RS09470	COG0456	acetyltransferase
CJO92_RS09475	COG1214	PFAM Peptidase M22, glycoprotease
CJO92_RS09490	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
CJO92_RS09505	COG0583	DNA-binding transcription factor activity
CJO92_RS09515	COG2224	Isocitrate lyase
CJO92_RS09535	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
CJO92_RS09550	COG3275	phosphorelay sensor kinase activity
CJO92_RS09565	COG0583	DNA-binding transcription factor activity
CJO92_RS09570	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
CJO92_RS09575	COG4208	sulfate ABC transporter
CJO92_RS09580	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
CJO92_RS09600	COG1116	anion transmembrane transporter activity
CJO92_RS09605	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CJO92_RS09610	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CJO92_RS09615	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CJO92_RS09620	COG0431	NADPH-dependent FMN reductase
CJO92_RS09625	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
CJO92_RS09630	COG0542	response to heat
CJO92_RS09640	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
CJO92_RS09645	COG0314	molybdopterin synthase activity
CJO92_RS09650	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
CJO92_RS09655	COG0303	'Molybdopterin
CJO92_RS09660	COG1573	uracil-dna glycosylase
CJO92_RS09675	COG0436	Aminotransferase
CJO92_RS09685	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
CJO92_RS09690	COG2076	Multidrug Resistance protein
CJO92_RS09695	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CJO92_RS09710	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CJO92_RS09710	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
CJO92_RS09720	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
CJO92_RS09725	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
CJO92_RS09735	COG0791	NLP P60 protein
CJO92_RS09740	COG0306	phosphate transporter
CJO92_RS09750	COG0305	Participates in initiation and elongation during chromosome replication
CJO92_RS09755	COG0359	binds to the 23S rRNA
CJO92_RS09760	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
CJO92_RS09770	COG0360	Binds together with S18 to 16S ribosomal RNA
CJO92_RS09785	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
CJO92_RS09805	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CJO92_RS09820	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CJO92_RS09825	COG1024	Enoyl-CoA hydratase
CJO92_RS09835	COG1846	Transcriptional regulator
CJO92_RS09845	COG1566	PFAM secretion protein HlyD family protein
CJO92_RS09850	COG2814	Major facilitator Superfamily
CJO92_RS09855	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
CJO92_RS09860	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
CJO92_RS09865	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
CJO92_RS09870	COG2251	uridine kinase activity
CJO92_RS09870	COG0195	Participates in both transcription termination and antitermination
CJO92_RS09875	COG0779	Required for maturation of 30S ribosomal subunits
CJO92_RS09885	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
CJO92_RS09895	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CJO92_RS09930	COG3278	Belongs to the heme-copper respiratory oxidase family
CJO92_RS09940	COG2217	Heavy metal translocating P-type atpase
CJO92_RS09950	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
CJO92_RS09955	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CJO92_RS09960	COG0508	dehydrogenase complex catalyzes the overall conversion of
CJO92_RS09965	COG0567	Dehydrogenase, E1 component
CJO92_RS09970	COG0584	glycerophosphoryl diester phosphodiesterase
CJO92_RS09975	COG3842	ATPase activity
CJO92_RS09980	COG0395	ABC-type sugar transport system, permease component
CJO92_RS09985	COG1175	transmembrane transport
CJO92_RS09990	COG1653	transport
CJO92_RS10005	COG2204	response regulator
CJO92_RS10020	COG0174	glutamine synthetase
CJO92_RS10030	COG1546	Belongs to the CinA family
CJO92_RS10030	COG1058	Belongs to the CinA family
CJO92_RS10055	COG1643	Atp-dependent helicase
CJO92_RS10060	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
CJO92_RS10060	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
CJO92_RS10065	COG0673	inositol 2-dehydrogenase activity
CJO92_RS10075	COG3718	enzyme involved in inositol metabolism
CJO92_RS10085	COG3962	Belongs to the TPP enzyme family
CJO92_RS10095	COG4211	Belongs to the binding-protein-dependent transport system permease family
CJO92_RS10100	COG1129	ABC transporter
CJO92_RS10150	COG1737	Transcriptional regulator
CJO92_RS10155	COG0673	inositol 2-dehydrogenase activity
CJO92_RS10160	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
CJO92_RS10165	COG0840	transmembrane signaling receptor activity
CJO92_RS10175	COG1953	Uracil, thiamine, allantoin
CJO92_RS10185	COG0493	'glutamate synthase
CJO92_RS10195	COG1309	transcriptional regulator
CJO92_RS10200	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
CJO92_RS10205	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
CJO92_RS10210	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
CJO92_RS10215	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CJO92_RS10220	COG0557	exoribonuclease II activity
CJO92_RS10230	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
CJO92_RS10235	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
CJO92_RS10240	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
CJO92_RS10250	COG0330	HflC and HflK could
CJO92_RS10255	COG0330	HflC and HflK could
CJO92_RS10260	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
CJO92_RS10265	COG1923	regulation of RNA biosynthetic process
CJO92_RS10270	COG1160	GTP binding
CJO92_RS10280	COG2976	Protein conserved in bacteria
CJO92_RS10285	COG0124	histidyl-tRNA synthetase
CJO92_RS10290	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
CJO92_RS10305	COG0820	rRNA (adenine-C2-)-methyltransferase activity
CJO92_RS10310	COG0105	UTP biosynthetic process
CJO92_RS10320	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
CJO92_RS10340	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
CJO92_RS10345	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
CJO92_RS10355	COG1902	pentaerythritol trinitrate reductase activity
CJO92_RS10360	COG1309	transcriptional regulator
CJO92_RS10365	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CJO92_RS10375	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CJO92_RS10380	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CJO92_RS10395	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
CJO92_RS10400	COG2329	Antibiotic biosynthesis monooxygenase
CJO92_RS10405	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
CJO92_RS10410	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CJO92_RS10420	COG1074	ATP-dependent DNA helicase activity
CJO92_RS10435	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
CJO92_RS10445	COG2197	response regulator
CJO92_RS10450	COG3228	Belongs to the MtfA family
CJO92_RS10460	COG0254	rRNA binding
CJO92_RS10470	COG0534	Mate efflux family protein
CJO92_RS10505	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CJO92_RS10510	COG1752	Esterase of the alpha-beta hydrolase superfamily
CJO92_RS10515	COG0791	NLP P60 protein
CJO92_RS10520	COG4172	Belongs to the ABC transporter superfamily
CJO92_RS10525	COG4239	(ABC) transporter, permease
CJO92_RS10530	COG4174	ABC transporter (Permease)
CJO92_RS10535	COG4166	transmembrane transport
CJO92_RS10555	COG0037	tRNA processing
CJO92_RS10560	COG0825	malonyl-CoA metabolic process
CJO92_RS10565	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
CJO92_RS10570	COG0215	cysteine-tRNA ligase activity
CJO92_RS10585	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CJO92_RS10590	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CJO92_RS10595	COG1045	serine acetyltransferase
CJO92_RS10605	COG0483	inositol monophosphate 1-phosphatase activity
CJO92_RS10610	COG1396	sequence-specific DNA binding
CJO92_RS10620	COG2258	MOSC domain
CJO92_RS10640	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
CJO92_RS10655	COG2850	peptidyl-arginine hydroxylation
CJO92_RS10660	COG0321	lipoyl(octanoyl) transferase activity
CJO92_RS10660	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
CJO92_RS10665	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
CJO92_RS10670	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CJO92_RS10680	COG0180	Tryptophanyl-tRNA synthetase
CJO92_RS10685	COG1994	Peptidase M50
CJO92_RS10690	COG0009	L-threonylcarbamoyladenylate synthase
CJO92_RS10695	COG0613	PHP domain protein
CJO92_RS10700	COG0492	ferredoxin-NADP+ reductase activity
CJO92_RS10715	COG3011	Protein conserved in bacteria
CJO92_RS10720	COG2267	carboxylic ester hydrolase activity
CJO92_RS10725	COG2833	Protein of unknown function (DUF455)
CJO92_RS10735	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
CJO92_RS10745	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
CJO92_RS10750	COG0148	phosphopyruvate hydratase activity
CJO92_RS10760	COG2877	3-deoxy-8-phosphooctulonate synthase activity
CJO92_RS10765	COG0504	CTP synthase activity
CJO92_RS10770	COG2267	carboxylic ester hydrolase activity
CJO92_RS10790	COG2308	Evidence 4 Homologs of previously reported genes of
CJO92_RS10800	COG0084	hydrolase, TatD family'
CJO92_RS10805	COG1136	(ABC) transporter
CJO92_RS10820	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
CJO92_RS10825	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
CJO92_RS10850	COG2855	membrane
CJO92_RS10855	COG0583	DNA-binding transcription factor activity
CJO92_RS10980	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
CJO92_RS10985	COG4117	Thiosulfate reductase cytochrome B subunit (Membrane anchoring protein)
CJO92_RS11005	COG3485	protocatechuate 3,4-dioxygenase
CJO92_RS11015	COG2902	Dehydrogenase
CJO92_RS11040	COG0583	DNA-binding transcription factor activity
CJO92_RS11045	COG2271	Major facilitator Superfamily
CJO92_RS11090	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CJO92_RS11100	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CJO92_RS11110	COG2271	Major facilitator Superfamily
CJO92_RS11120	COG2186	Transcriptional regulator
CJO92_RS11130	COG0745	RESPONSE REGULATOR receiver
CJO92_RS11140	COG5002	protein histidine kinase activity
CJO92_RS11150	COG0745	RESPONSE REGULATOR receiver
CJO92_RS11175	COG0322	excinuclease ABC activity
CJO92_RS11185	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
CJO92_RS11195	COG0736	holo-[acyl-carrier-protein] synthase activity
CJO92_RS11200	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
CJO92_RS11205	COG1381	Involved in DNA repair and RecF pathway recombination
CJO92_RS11210	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
CJO92_RS11215	COG0571	ribonuclease III activity
CJO92_RS11225	COG0681	Belongs to the peptidase S26 family
CJO92_RS11230	COG0481	GTPase activity
CJO92_RS11240	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CJO92_RS11265	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CJO92_RS11270	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CJO92_RS11275	COG1028	Short-chain dehydrogenase reductase Sdr
CJO92_RS11285	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CJO92_RS11290	COG0416	fatty acid biosynthetic process
CJO92_RS11295	COG0333	Belongs to the bacterial ribosomal protein bL32 family
CJO92_RS11300	COG1399	metal-binding, possibly nucleic acid-binding protein
CJO92_RS11305	COG0424	maF-like protein
CJO92_RS11315	COG0616	signal peptide processing
CJO92_RS11315	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
CJO92_RS11325	COG0546	phosphoglycolate phosphatase activity
CJO92_RS11335	COG1530	ribonuclease E activity
CJO92_RS11340	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
CJO92_RS11345	COG0746	molybdenum cofactor guanylyltransferase activity
CJO92_RS11380	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
CJO92_RS11390	COG1028	Short-chain dehydrogenase reductase Sdr
CJO92_RS11395	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
CJO92_RS11415	COG0443	Heat shock 70 kDa protein
CJO92_RS11420	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
CJO92_RS11435	COG0822	iron-sulfur transferase activity
CJO92_RS11440	COG1104	cysteine desulfurase activity
CJO92_RS11450	COG1879	ABC-type sugar transport system periplasmic component
CJO92_RS11455	COG1129	ABC transporter
CJO92_RS11460	COG1172	Belongs to the binding-protein-dependent transport system permease family
CJO92_RS11465	COG1609	Transcriptional regulator
CJO92_RS11470	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CJO92_RS11480	COG0556	nucleotide-excision repair
CJO92_RS11495	COG1309	transcriptional regulator
CJO92_RS11500	COG2878	Part of a membrane complex involved in electron transport
CJO92_RS11505	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CJO92_RS11510	COG0778	Nitroreductase
CJO92_RS11540	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CJO92_RS11605	COG0326	Molecular chaperone. Has ATPase activity
CJO92_RS11610	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CJO92_RS11620	COG0697	spore germination
CJO92_RS11630	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CJO92_RS11635	COG0625	glutathione transferase activity
CJO92_RS11655	COG1620	l-lactate permease
CJO92_RS11695	COG0488	(ABC) transporter
CJO92_RS11720	COG0038	chloride channel
CJO92_RS11730	COG0582	viral genome integration into host DNA
CJO92_RS11815	COG0513	Belongs to the DEAD box helicase family
CJO92_RS11820	COG1262	PFAM Formylglycine-generating sulfatase enzyme
CJO92_RS11835	COG0861	Integral membrane protein TerC family
CJO92_RS11845	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
CJO92_RS11855	COG0312	modulator of DNA gyrase
CJO92_RS11860	COG3028	Belongs to the UPF0307 family
CJO92_RS11865	COG0521	Mo-molybdopterin cofactor biosynthetic process
CJO92_RS11870	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
CJO92_RS11875	COG0501	Belongs to the peptidase M48B family
CJO92_RS11880	COG1162	GTPase activity
CJO92_RS11890	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
CJO92_RS11900	COG0335	large ribosomal subunit rRNA binding
CJO92_RS11905	COG0336	Belongs to the RNA methyltransferase TrmD family
CJO92_RS11910	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
CJO92_RS11915	COG0228	four-way junction DNA binding
CJO92_RS11950	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CJO92_RS11955	COG1960	acyl-CoA dehydrogenase activity
CJO92_RS11975	COG2011	ABC-type metal ion transport system permease component
CJO92_RS11980	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CJO92_RS11985	COG0123	including yeast histone deacetylase and acetoin utilization protein
CJO92_RS11990	COG2951	lytic endotransglycosylase activity
CJO92_RS12005	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CJO92_RS12010	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
CJO92_RS12020	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
CJO92_RS12030	COG0776	regulation of translation
CJO92_RS12040	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
CJO92_RS12045	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
CJO92_RS12050	COG0287	Prephenate dehydrogenase
CJO92_RS12055	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CJO92_RS12060	COG0077	Prephenate dehydratase
CJO92_RS12060	COG1605	Chorismate mutase
CJO92_RS12065	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
CJO92_RS12090	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
CJO92_RS12150	COG2831	hemolysin activation secretion protein
CJO92_RS12245	COG2916	Histone family protein nucleoid-structuring protein H-NS
CJO92_RS12350	COG2189	Belongs to the N(4) N(6)-methyltransferase family
CJO92_RS12420	COG0596	Alpha beta hydrolase
CJO92_RS12540	COG5297	Belongs to the glycosyl hydrolase family 6
CJO92_RS12600	COG4305	rare lipoprotein A
CJO92_RS12610	COG1733	regulation of RNA biosynthetic process
CJO92_RS12640	COG0425	Belongs to the sulfur carrier protein TusA family
CJO92_RS12655	COG1942	4-Oxalocrotonate Tautomerase
CJO92_RS12660	COG0235	Class ii aldolase
CJO92_RS12665	COG0477	Major facilitator Superfamily
CJO92_RS12680	COG0330	HflC and HflK could
CJO92_RS12715	COG4804	nuclease activity
CJO92_RS12730	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
CJO92_RS12755	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CJO92_RS12760	COG2353	YceI-like domain
CJO92_RS12785	COG4681	YaeQ
CJO92_RS12800	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
CJO92_RS12810	COG0318	PFAM AMP-dependent synthetase and ligase
CJO92_RS12815	COG3118	belongs to the thioredoxin family
CJO92_RS12825	COG2703	oxygen carrier activity
CJO92_RS12830	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
CJO92_RS12835	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
CJO92_RS12840	COG2982	Protein involved in outer membrane biogenesis
CJO92_RS12865	COG0259	pyridoxamine-phosphate oxidase activity
CJO92_RS12870	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CJO92_RS12880	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CJO92_RS12885	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CJO92_RS12895	COG1522	sequence-specific DNA binding
CJO92_RS12900	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
CJO92_RS12910	COG3483	tryptophan 2,3-dioxygenase activity
CJO92_RS12920	COG1960	acyl-CoA dehydrogenase activity
CJO92_RS12925	COG2252	PERMEase
CJO92_RS12930	COG0450	alkyl hydroperoxide reductase
CJO92_RS12935	COG4575	ribosome binding
CJO92_RS12955	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
CJO92_RS12960	COG0390	transport system, permease component
CJO92_RS12965	COG0494	nUDIX hydrolase
CJO92_RS12970	COG2175	clavaminate synthase activity
CJO92_RS12990	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
CJO92_RS13000	COG2391	methyltransferase activity
CJO92_RS13005	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
CJO92_RS13020	COG0823	Involved in the tonB-independent uptake of proteins
CJO92_RS13040	COG0824	Thioesterase
CJO92_RS13045	COG4221	oxidoreductase activity
CJO92_RS13050	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
CJO92_RS13055	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
CJO92_RS13120	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CJO92_RS13120	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CJO92_RS13135	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
CJO92_RS13140	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CJO92_RS13145	COG0436	Aminotransferase
CJO92_RS13155	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
CJO92_RS13165	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CJO92_RS13195	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
CJO92_RS13205	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
CJO92_RS13210	COG0243	molybdopterin cofactor binding
CJO92_RS13230	COG0220	tRNA (guanine-N7-)-methyltransferase activity
CJO92_RS13235	COG1902	pentaerythritol trinitrate reductase activity
CJO92_RS13240	COG1968	undecaprenyl-diphosphatase activity
CJO92_RS13265	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
CJO92_RS13270	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CJO92_RS13270	COG0425	Belongs to the sulfur carrier protein TusA family
CJO92_RS13290	COG0859	PFAM glycosyl transferase family 9
CJO92_RS13345	COG1088	dTDP-glucose 4,6-dehydratase activity
CJO92_RS13350	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
CJO92_RS13365	COG0540	Belongs to the ATCase OTCase family
CJO92_RS13370	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
CJO92_RS13375	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
CJO92_RS13380	COG1678	Uncharacterized ACR, COG1678
CJO92_RS13390	COG2198	Histidine kinase
CJO92_RS13390	COG0784	Response regulator, receiver
CJO92_RS13390	COG0643	Histidine kinase
CJO92_RS13390	COG2198	Histidine kinase
CJO92_RS13390	COG0784	Response regulator, receiver
CJO92_RS13390	COG0643	Histidine kinase
CJO92_RS13395	COG0840	transmembrane signaling receptor activity
CJO92_RS13415	COG1773	rubredoxin
CJO92_RS13420	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
CJO92_RS13425	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CJO92_RS13435	COG1704	LemA family
CJO92_RS13470	COG4964	Belongs to the GSP D family
CJO92_RS13515	COG0463	Glycosyl transferase, family 2
CJO92_RS13545	COG4269	membrane
CJO92_RS13550	COG0459	protein refolding
CJO92_RS13555	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
CJO92_RS13585	COG0443	Heat shock 70 kDa protein
CJO92_RS13600	COG0513	Belongs to the DEAD box helicase family
CJO92_RS13605	COG2974	May be involved in recombination
CJO92_RS13655	COG0840	transmembrane signaling receptor activity
CJO92_RS13660	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
CJO92_RS13680	COG2995	paraquat-inducible protein a
CJO92_RS13685	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
CJO92_RS13685	COG3008	intermembrane lipid transfer
CJO92_RS13695	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CJO92_RS13755	COG0154	amidase activity
CJO92_RS13765	COG1228	amidohydrolase
CJO92_RS13770	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
CJO92_RS13785	COG0738	Major facilitator superfamily
CJO92_RS13790	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
CJO92_RS13800	COG2027	D-alanyl-D-alanine carboxypeptidase
CJO92_RS13805	COG1763	Mo-molybdopterin cofactor biosynthetic process
CJO92_RS13815	COG0009	L-threonylcarbamoyladenylate synthase
CJO92_RS13820	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
CJO92_RS13825	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
CJO92_RS13830	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
CJO92_RS13840	COG0469	pyruvate kinase activity
CJO92_RS13845	COG0126	phosphoglycerate kinase activity
CJO92_RS13875	COG0859	PFAM glycosyl transferase family 9
CJO92_RS13885	COG0429	hydrolase of the alpha beta-hydrolase fold
CJO92_RS13900	COG0315	cyclic pyranopterin monophosphate synthase activity
CJO92_RS13910	COG4969	Belongs to the N-Me-Phe pilin family
CJO92_RS13915	COG4969	Belongs to the N-Me-Phe pilin family
CJO92_RS13920	COG0861	Integral membrane protein TerC family
CJO92_RS13925	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
CJO92_RS13930	COG0045	succinate-CoA ligase (ADP-forming) activity
CJO92_RS13940	COG2137	regulation of response to DNA damage stimulus
CJO92_RS13945	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
CJO92_RS13965	COG0477	Major facilitator Superfamily
CJO92_RS13980	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CJO92_RS13990	COG0745	RESPONSE REGULATOR receiver
CJO92_RS14010	COG0513	Belongs to the DEAD box helicase family
CJO92_RS14030	COG2030	dehydratase
CJO92_RS14040	COG0318	PFAM AMP-dependent synthetase and ligase
CJO92_RS14055	COG0493	'glutamate synthase
CJO92_RS14055	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CJO92_RS14065	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CJO92_RS14070	COG1702	phosphate starvation-inducible protein PhoH
CJO92_RS14075	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
CJO92_RS14090	COG4535	Mg2 and Co2 transporter CorC
CJO92_RS14095	COG0815	Transfers the fatty acyl group on membrane lipoproteins
CJO92_RS14100	COG0752	glycyl-tRNA synthetase alpha subunit
CJO92_RS14110	COG0751	glycine-tRNA ligase activity
CJO92_RS14115	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
CJO92_RS14120	COG0204	Acyl-transferase
CJO92_RS14130	COG0346	lactoylglutathione lyase activity
CJO92_RS14135	COG0697	spore germination
CJO92_RS14140	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
CJO92_RS14145	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
CJO92_RS14150	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CJO92_RS14155	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
CJO92_RS14175	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
CJO92_RS14185	COG0006	proline dipeptidase activity
CJO92_RS14190	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CJO92_RS14195	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CJO92_RS14205	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
CJO92_RS14210	COG0138	bifunctional purine biosynthesis protein purh
CJO92_RS14215	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
CJO92_RS14230	COG0632	four-way junction helicase activity
CJO92_RS14235	COG2255	four-way junction helicase activity
CJO92_RS14250	COG1881	PFAM PEBP family protein
CJO92_RS14255	COG1490	D-aminoacyl-tRNA deacylase activity
CJO92_RS14260	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
CJO92_RS14265	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
CJO92_RS14270	COG0316	Belongs to the HesB IscA family
CJO92_RS14285	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
CJO92_RS14290	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
CJO92_RS14310	COG0418	dihydroorotase activity
CJO92_RS14320	COG0121	glutamine amidotransferase
CJO92_RS14325	COG1126	abc transporter atp-binding protein
CJO92_RS14330	COG0765	amino acid transport
CJO92_RS14335	COG0765	amino acid transport
CJO92_RS14345	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CJO92_RS14355	COG5265	(ABC) transporter
CJO92_RS14365	COG1024	Enoyl-CoA hydratase
CJO92_RS14370	COG0183	Belongs to the thiolase family
CJO92_RS14375	COG1250	3-hydroxyacyl-CoA dehydrogenase
CJO92_RS14375	COG1024	Enoyl-CoA hydratase
CJO92_RS14380	COG1960	acyl-CoA dehydrogenase activity
CJO92_RS14395	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CJO92_RS14400	COG3568	Endonuclease Exonuclease Phosphatase
CJO92_RS14405	COG0494	nUDIX hydrolase
CJO92_RS14415	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
CJO92_RS14435	COG0500	methyltransferase
CJO92_RS14440	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
CJO92_RS14455	COG2226	methyltransferase
CJO92_RS14465	COG4178	(ABC) transporter
CJO92_RS14480	COG1238	metal cluster binding
CJO92_RS14485	COG0700	Nucleoside recognition
CJO92_RS14495	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CJO92_RS14500	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
CJO92_RS14500	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
CJO92_RS14530	COG0318	PFAM AMP-dependent synthetase and ligase
CJO92_RS14535	COG3265	gluconokinase activity
CJO92_RS14560	COG0179	Fumarylacetoacetate (FAA) hydrolase
CJO92_RS14570	COG1028	Short-chain dehydrogenase reductase Sdr
CJO92_RS14585	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
CJO92_RS14595	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
CJO92_RS14600	COG2409	Drug exporters of the RND superfamily
CJO92_RS14610	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CJO92_RS14630	COG0629	single-stranded DNA binding
CJO92_RS14635	COG2814	Major facilitator Superfamily
CJO92_RS14660	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
CJO92_RS14665	COG0693	protein deglycase activity
CJO92_RS14690	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
CJO92_RS14705	COG1137	ATPase activity
CJO92_RS14710	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
CJO92_RS14715	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
CJO92_RS14725	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
CJO92_RS14745	COG1194	a g-specific adenine glycosylase
CJO92_RS14755	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
CJO92_RS14765	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
CJO92_RS14770	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
CJO92_RS14780	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CJO92_RS14785	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
CJO92_RS14790	COG0193	aminoacyl-tRNA hydrolase activity
CJO92_RS14800	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CJO92_RS14805	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
CJO92_RS14810	COG0742	ribosomal rna small subunit methyltransferase
CJO92_RS14815	COG0612	Peptidase, M16
CJO92_RS14820	COG0612	Peptidase, M16
CJO92_RS14835	COG0625	glutathione transferase activity
CJO92_RS14845	COG3707	response regulator
CJO92_RS14855	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CJO92_RS14860	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CJO92_RS14865	COG1116	anion transmembrane transporter activity
CJO92_RS14870	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CJO92_RS14875	COG1741	Belongs to the pirin family
CJO92_RS14885	COG3300	MHYT domain
CJO92_RS14885	COG5001	Diguanylate cyclase
CJO92_RS14890	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CJO92_RS14895	COG1999	signal sequence binding
CJO92_RS14900	COG0109	protoheme IX farnesyltransferase activity
CJO92_RS14905	COG1612	heme a metabolic process
CJO92_RS14935	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
CJO92_RS14945	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
CJO92_RS14960	COG2226	methyltransferase
CJO92_RS14965	COG1040	competence protein
CJO92_RS14975	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
CJO92_RS14980	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
CJO92_RS14985	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
CJO92_RS14995	COG0588	phosphoglycerate mutase activity
CJO92_RS15000	COG0793	Belongs to the peptidase S41A family
CJO92_RS15020	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CJO92_RS15025	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CJO92_RS15035	COG0189	ligase activity
CJO92_RS15045	COG0004	ammonium transporteR
CJO92_RS15085	COG1280	lysine exporter protein (LysE YggA)
CJO92_RS15095	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
CJO92_RS15105	COG2204	response regulator
CJO92_RS15115	COG1301	dicarboxylic acid transport
CJO92_RS15120	COG3411	Ferredoxin
CJO92_RS15125	COG2945	thiolester hydrolase activity
CJO92_RS15130	COG1686	Belongs to the peptidase S11 family
CJO92_RS15135	COG2921	Belongs to the UPF0250 family
CJO92_RS15140	COG0583	DNA-binding transcription factor activity
CJO92_RS15150	COG0321	lipoyl(octanoyl) transferase activity
CJO92_RS15155	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
CJO92_RS15170	COG3511	phospholipase C
CJO92_RS15200	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
CJO92_RS15205	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
CJO92_RS15205	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
CJO92_RS15210	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
CJO92_RS15220	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
CJO92_RS15285	COG2267	carboxylic ester hydrolase activity
CJO92_RS15305	COG1410	methionine synthase
CJO92_RS15305	COG0646	methionine synthase
CJO92_RS15315	COG2197	response regulator
CJO92_RS15340	COG0018	arginyl-trna synthetase
CJO92_RS15350	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CJO92_RS15355	COG4221	oxidoreductase activity
CJO92_RS15365	COG2329	Antibiotic biosynthesis monooxygenase
CJO92_RS15375	COG0789	Transcriptional regulator
CJO92_RS15380	COG1960	acyl-CoA dehydrogenase activity
CJO92_RS15385	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
CJO92_RS15390	COG0288	reversible hydration of carbon dioxide
CJO92_RS15405	COG0183	Belongs to the thiolase family
CJO92_RS15415	COG1960	acyl-CoA dehydrogenase activity
CJO92_RS15430	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CJO92_RS15435	COG3012	SEC-C Motif Domain Protein
CJO92_RS15440	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
CJO92_RS15450	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
CJO92_RS15455	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
CJO92_RS15470	COG4770	biotin carboxylase activity
CJO92_RS15485	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CJO92_RS15505	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CJO92_RS15515	COG0596	Alpha beta hydrolase
CJO92_RS15560	COG1250	3-hydroxyacyl-CoA dehydrogenase
CJO92_RS15565	COG0583	DNA-binding transcription factor activity
CJO92_RS15595	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
CJO92_RS15595	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
CJO92_RS15595	COG1703	isobutyryl-CoA mutase activity
CJO92_RS15635	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CJO92_RS15640	COG0430	RNA-3'-phosphate cyclase activity
CJO92_RS15645	COG3541	Predicted nucleotidyltransferase
CJO92_RS15650	COG1690	Belongs to the RtcB family
CJO92_RS15660	COG4650	regulator
CJO92_RS15675	COG1254	Belongs to the acylphosphatase family
CJO92_RS15690	COG2151	metal-sulfur cluster biosynthetic enzyme
CJO92_RS15750	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
CJO92_RS15755	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
CJO92_RS15765	COG0037	tRNA processing
CJO92_RS15770	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
CJO92_RS15780	COG0546	phosphoglycolate phosphatase activity
CJO92_RS15780	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
CJO92_RS15805	COG0493	'glutamate synthase
CJO92_RS15820	COG0842	Transport permease protein
CJO92_RS15825	COG1131	(ABC) transporter
CJO92_RS15830	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CJO92_RS15845	COG0583	DNA-binding transcription factor activity
CJO92_RS15850	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CJO92_RS15865	COG1028	Short-chain dehydrogenase reductase Sdr
CJO92_RS15875	COG2223	nitrite transmembrane transporter activity
CJO92_RS15880	COG0501	Belongs to the peptidase M48B family
CJO92_RS15890	COG3209	COG3209 Rhs family protein
CJO92_RS15925	COG0697	spore germination
CJO92_RS15950	COG1434	Gram-negative-bacterium-type cell wall biogenesis
CJO92_RS15970	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
CJO92_RS15975	COG4682	membrane
CJO92_RS15980	COG0708	Exodeoxyribonuclease III
CJO92_RS15985	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
CJO92_RS15990	COG2326	polyphosphate kinase activity
CJO92_RS15995	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
CJO92_RS16000	COG1560	Kdo2-lipid A biosynthetic process
CJO92_RS16010	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
CJO92_RS16020	COG2207	Transcriptional regulator
CJO92_RS16030	COG0617	tRNA 3'-terminal CCA addition
CJO92_RS16030	COG0517	IMP dehydrogenase activity
CJO92_RS16030	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
CJO92_RS16040	COG1522	sequence-specific DNA binding
CJO92_RS16045	COG1595	DNA-templated transcription, initiation
CJO92_RS16050	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CJO92_RS16080	COG1960	acyl-CoA dehydrogenase activity
CJO92_RS16115	COG2070	2-Nitropropane dioxygenase
CJO92_RS16120	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
CJO92_RS16135	COG2022	thiamine diphosphate biosynthetic process
CJO92_RS16145	COG2764	glyoxalase bleomycin resistance protein dioxygenase
CJO92_RS16155	COG0351	phosphomethylpyrimidine kinase
CJO92_RS16170	COG1785	Belongs to the alkaline phosphatase family
CJO92_RS16185	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
CJO92_RS16190	COG1950	PFAM Membrane protein of
CJO92_RS16195	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
CJO92_RS16205	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
CJO92_RS16220	COG0625	glutathione transferase activity
CJO92_RS16225	COG0617	tRNA 3'-terminal CCA addition
CJO92_RS16235	COG3246	L-lysine catabolic process to acetate
CJO92_RS16240	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
CJO92_RS16260	COG2204	response regulator
CJO92_RS16265	COG5000	phosphorelay sensor kinase activity
CJO92_RS16280	COG0501	Belongs to the peptidase M48B family
CJO92_RS16290	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
CJO92_RS16300	COG0242	peptide deformylase activity
CJO92_RS16305	COG1652	LysM domain
CJO92_RS16310	COG0758	DNA mediated transformation
CJO92_RS16325	COG0583	DNA-binding transcription factor activity
CJO92_RS16330	COG0318	PFAM AMP-dependent synthetase and ligase
CJO92_RS16335	COG0772	Belongs to the SEDS family
CJO92_RS16340	COG0768	penicillin binding
CJO92_RS16350	COG1792	Involved in formation and maintenance of cell shape
CJO92_RS16355	COG1077	Cell shape determining protein MreB Mrl
CJO92_RS16360	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CJO92_RS16365	COG0154	amidase activity
CJO92_RS16380	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CJO92_RS16390	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
CJO92_RS16395	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
CJO92_RS16415	COG0523	cobalamin synthesis protein
CJO92_RS16430	COG0747	negative chemotaxis
CJO92_RS16435	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
CJO92_RS16440	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
CJO92_RS16450	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
CJO92_RS16480	COG1595	DNA-templated transcription, initiation
CJO92_RS16485	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
CJO92_RS16505	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
CJO92_RS16515	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CJO92_RS16535	COG2879	small protein
CJO92_RS16540	COG1966	Carbon starvation protein
CJO92_RS16555	COG3622	Belongs to the hyi family
CJO92_RS16565	COG0745	RESPONSE REGULATOR receiver
CJO92_RS16570	COG1274	phosphoenolpyruvate carboxykinase (GTP) activity
CJO92_RS16580	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CJO92_RS16585	COG3384	dioxygenase
CJO92_RS16600	COG1309	transcriptional regulator
CJO92_RS16605	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CJO92_RS16610	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CJO92_RS16620	COG0828	Belongs to the bacterial ribosomal protein bS21 family
CJO92_RS16625	COG1408	metallophosphoesterase
CJO92_RS16640	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
CJO92_RS16645	COG0706	membrane insertase activity
CJO92_RS16650	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
CJO92_RS16655	COG0594	ribonuclease P activity
CJO92_RS16660	COG0230	Belongs to the bacterial ribosomal protein bL34 family
CJO92_RS16675	COG1278	Cold shock
CJO92_RS16700	COG1210	Utp--glucose-1-phosphate uridylyltransferase
CJO92_RS16705	COG0477	Major facilitator Superfamily
CJO92_RS16710	COG4191	Histidine kinase
CJO92_RS16720	COG4377	Putative membrane peptidase family (DUF2324)
CJO92_RS16730	COG5002	protein histidine kinase activity
CJO92_RS16730	COG5001	Diguanylate cyclase
CJO92_RS16730	COG3447	MASE1 domain protein
CJO92_RS16775	COG0038	chloride channel
CJO92_RS16795	COG0583	DNA-binding transcription factor activity
CJO92_RS16800	COG1881	PFAM PEBP family protein
CJO92_RS16835	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CJO92_RS16855	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
CJO92_RS16860	COG0745	RESPONSE REGULATOR receiver
CJO92_RS16875	COG2916	Histone family protein nucleoid-structuring protein H-NS
CJO92_RS16915	COG1024	Enoyl-CoA hydratase
CJO92_RS16920	COG1960	acyl-CoA dehydrogenase activity
CJO92_RS16960	COG0477	Major facilitator Superfamily
CJO92_RS16965	COG3636	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
CJO92_RS16970	COG3657	addiction module killer protein
CJO92_RS16975	COG2814	Major facilitator Superfamily
CJO92_RS17000	COG0583	DNA-binding transcription factor activity
CJO92_RS17030	COG0725	ABC transporter, periplasmic molybdate-binding protein
CJO92_RS17045	COG0714	Associated with various cellular activities
CJO92_RS17060	COG0288	reversible hydration of carbon dioxide
CJO92_RS17065	COG0659	secondary active sulfate transmembrane transporter activity
CJO92_RS17100	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
CJO92_RS17140	COG5001	Diguanylate cyclase
CJO92_RS17140	COG3706	GGDEF domain
CJO92_RS17140	COG2203	Gaf domain
CJO92_RS17140	COG4251	negative regulation of phosphorylation
CJO92_RS17145	COG0697	spore germination
CJO92_RS17195	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
CJO92_RS17205	COG0534	Mate efflux family protein
CJO92_RS17210	COG3251	PFAM MbtH domain protein
CJO92_RS17220	COG0529	Catalyzes the synthesis of activated sulfate
CJO92_RS17290	COG2706	6-phosphogluconolactonase activity
CJO92_RS17315	COG2814	Major facilitator Superfamily
CJO92_RS17320	COG0667	Aldo Keto reductase
CJO92_RS17335	COG0730	response to heat
CJO92_RS17365	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
CJO92_RS17370	COG1607	acyl-coa hydrolase
CJO92_RS17400	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
CJO92_RS17460	COG3852	Histidine kinase
CJO92_RS17490	COG1846	Transcriptional regulator
CJO92_RS17495	COG1024	Enoyl-CoA hydratase
CJO92_RS17500	COG1012	belongs to the aldehyde dehydrogenase family
CJO92_RS17530	COG0657	acetylesterase activity
CJO92_RS17580	COG2814	Major facilitator Superfamily
CJO92_RS17590	COG1640	4-alpha-glucanotransferase
CJO92_RS17595	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
CJO92_RS17605	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
CJO92_RS17610	COG0366	Alpha amylase catalytic
CJO92_RS17615	COG0366	Alpha amylase catalytic
CJO92_RS17620	COG0297	glycogen (starch) synthase activity
CJO92_RS17630	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CJO92_RS17635	COG4558	Periplasmic binding protein
CJO92_RS17640	COG3720	iron ion transport
CJO92_RS17645	COG4771	TonB-dependent receptor
CJO92_RS17655	COG3634	alkyl hydroperoxide reductase activity
CJO92_RS17660	COG0735	belongs to the Fur family
CJO92_RS17680	COG1918	ferrous iron import across plasma membrane
CJO92_RS17680	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
CJO92_RS17690	COG3447	MASE1 domain protein
CJO92_RS17690	COG5001	Diguanylate cyclase
CJO92_RS17690	COG5002	protein histidine kinase activity
CJO92_RS17700	COG0840	transmembrane signaling receptor activity
CJO92_RS17720	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
CJO92_RS17735	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
CJO92_RS17745	COG1473	amidohydrolase
CJO92_RS17770	COG3979	chitinase
CJO92_RS17780	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
CJO92_RS17800	COG3300	MHYT domain
CJO92_RS17800	COG5001	Diguanylate cyclase
CJO92_RS17840	COG0531	amino acid
CJO92_RS17845	COG0534	Mate efflux family protein
CJO92_RS17850	COG2197	response regulator
CJO92_RS17860	COG1649	PFAM Uncharacterised BCR, COG1649
CJO92_RS17860	COG0726	polysaccharide deacetylase
CJO92_RS17865	COG1215	transferase activity, transferring glycosyl groups
CJO92_RS17885	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CJO92_RS17890	COG2274	protein secretion by the type I secretion system
CJO92_RS17905	COG0840	transmembrane signaling receptor activity
CJO92_RS17930	COG2070	2-Nitropropane dioxygenase
CJO92_RS17935	COG0583	DNA-binding transcription factor activity
CJO92_RS17940	COG1695	Transcriptional regulator
CJO92_RS17955	COG0589	response to stress
CJO92_RS17975	COG0789	Transcriptional regulator
CJO92_RS17985	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CJO92_RS18000	COG1764	response to oxidative stress
CJO92_RS18020	COG2916	Histone family protein nucleoid-structuring protein H-NS
CJO92_RS18025	COG2188	Transcriptional regulator
CJO92_RS18035	COG2197	response regulator
CJO92_RS18055	COG1815	bacterial-type flagellum-dependent cell motility
CJO92_RS18065	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
CJO92_RS18070	COG1749	Flagellar hook protein flgE
CJO92_RS18075	COG4787	bacterial-type flagellum-dependent cell motility
CJO92_RS18085	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
CJO92_RS18090	COG1706	bacterial-type flagellum-dependent cell motility
CJO92_RS18100	COG1256	bacterial-type flagellum assembly
CJO92_RS18120	COG1987	bacterial-type flagellum assembly
CJO92_RS18125	COG1338	Plays a role in the flagellum-specific transport system
CJO92_RS18140	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CJO92_RS18160	COG2197	response regulator
CJO92_RS18165	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CJO92_RS18190	COG1846	Transcriptional regulator
CJO92_RS18205	COG1677	Flagellar hook-basal body complex protein FliE
CJO92_RS18215	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CJO92_RS18225	COG1157	protein secretion by the type III secretion system
CJO92_RS18265	COG4251	negative regulation of phosphorylation
CJO92_RS18265	COG5001	Diguanylate cyclase
CJO92_RS18265	COG2203	Gaf domain
CJO92_RS18265	COG3706	GGDEF domain
CJO92_RS18280	COG2203	Gaf domain
CJO92_RS18280	COG3706	GGDEF domain
CJO92_RS18280	COG4251	negative regulation of phosphorylation
CJO92_RS18280	COG5001	Diguanylate cyclase
CJO92_RS18340	COG2223	nitrite transmembrane transporter activity
CJO92_RS18350	COG4774	siderophore transport
CJO92_RS18365	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CJO92_RS18370	COG2423	ornithine cyclodeaminase activity
CJO92_RS18375	COG4264	IucA IucC family
CJO92_RS18380	COG2814	Major facilitator Superfamily
CJO92_RS18385	COG4264	IucA IucC family
CJO92_RS18390	COG4264	IucA IucC family
CJO92_RS18400	COG0019	diaminopimelate decarboxylase activity
CJO92_RS18425	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CJO92_RS18455	COG1280	lysine exporter protein (LysE YggA)
CJO92_RS18480	COG1126	abc transporter atp-binding protein
CJO92_RS18485	COG0765	amino acid transport
CJO92_RS18490	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CJO92_RS18495	COG1522	sequence-specific DNA binding
CJO92_RS18500	COG2423	ornithine cyclodeaminase activity
CJO92_RS18520	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CJO92_RS18555	COG0537	adenosine 5'-monophosphoramidase activity
CJO92_RS18570	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CJO92_RS18580	COG0840	transmembrane signaling receptor activity
CJO92_RS18590	COG1215	transferase activity, transferring glycosyl groups
CJO92_RS18600	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
CJO92_RS18620	COG0668	transmembrane transport
CJO92_RS18645	COG3706	GGDEF domain
CJO92_RS18650	COG1914	H( )-stimulated, divalent metal cation uptake system
CJO92_RS18655	COG0443	Heat shock 70 kDa protein
CJO92_RS18675	COG2910	NAD(P)H-binding
CJO92_RS18710	COG0308	aminopeptidase N
CJO92_RS18750	COG2831	hemolysin activation secretion protein
CJO92_RS18755	COG0835	chemotaxis
CJO92_RS18755	COG0784	Response regulator, receiver
CJO92_RS18780	COG1404	Belongs to the peptidase S8 family
CJO92_RS18790	COG3396	Phenylacetate-CoA oxygenase
CJO92_RS18795	COG3460	Phenylacetate-CoA oxygenase
CJO92_RS18800	COG3396	Phenylacetate-CoA oxygenase
CJO92_RS18805	COG2151	metal-sulfur cluster biosynthetic enzyme
CJO92_RS18810	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CJO92_RS18850	COG0778	Nitroreductase
CJO92_RS18855	COG1797	cobyrinic acid a,c-diamide synthase activity
CJO92_RS18890	COG1903	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A
CJO92_RS18900	COG1648	precorrin-2 dehydrogenase activity
CJO92_RS18900	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
CJO92_RS18915	COG3411	Ferredoxin
CJO92_RS18920	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
CJO92_RS18925	COG1126	abc transporter atp-binding protein
CJO92_RS18930	COG0765	amino acid transport
CJO92_RS18935	COG4597	amino acid ABC transporter
CJO92_RS18940	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CJO92_RS18950	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
CJO92_RS18955	COG3795	YCII-related domain
CJO92_RS18965	COG1522	sequence-specific DNA binding
CJO92_RS18970	COG2515	1-aminocyclopropane-1-carboxylate deaminase
CJO92_RS18975	COG1024	Enoyl-CoA hydratase
CJO92_RS18980	COG1024	Enoyl-CoA hydratase
CJO92_RS18995	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CJO92_RS19000	COG1960	acyl-CoA dehydrogenase activity
CJO92_RS19010	COG5002	protein histidine kinase activity
CJO92_RS19015	COG0745	RESPONSE REGULATOR receiver
CJO92_RS19025	COG2132	Multicopper oxidase
CJO92_RS19065	COG0745	RESPONSE REGULATOR receiver
CJO92_RS19070	COG2205	protein histidine kinase activity
CJO92_RS19085	COG0778	Nitroreductase
CJO92_RS19120	COG0492	ferredoxin-NADP+ reductase activity
CJO92_RS19135	COG1335	isochorismatase
CJO92_RS19150	COG2814	Major facilitator Superfamily
CJO92_RS19165	COG0519	Catalyzes the synthesis of GMP from XMP
CJO92_RS19170	COG2807	transmembrane transport
CJO92_RS19200	COG1024	Enoyl-CoA hydratase
CJO92_RS19230	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
CJO92_RS19235	COG0583	DNA-binding transcription factor activity
CJO92_RS19240	COG0259	pyridoxamine-phosphate oxidase activity
CJO92_RS19250	COG0134	indole-3-glycerol-phosphate synthase activity
CJO92_RS19255	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CJO92_RS19265	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
CJO92_RS19285	COG1960	acyl-CoA dehydrogenase activity
CJO92_RS19305	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
CJO92_RS19395	COG1858	cytochrome C peroxidase
CJO92_RS19400	COG1730	sister chromatid segregation
CJO92_RS19425	COG1712	Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate
CJO92_RS19440	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
CJO92_RS19445	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CJO92_RS19470	COG1063	alcohol dehydrogenase
CJO92_RS19475	COG1028	Short-chain dehydrogenase reductase Sdr
CJO92_RS19480	COG3265	gluconokinase activity
CJO92_RS19485	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CJO92_RS19490	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
CJO92_RS19495	COG0436	Aminotransferase
CJO92_RS19505	COG0511	ligase activity, forming carbon-carbon bonds
CJO92_RS19515	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
CJO92_RS19520	COG1984	allophanate hydrolase subunit 2
CJO92_RS19530	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
CJO92_RS19535	COG4221	oxidoreductase activity
CJO92_RS19540	COG0765	amino acid transport
CJO92_RS19545	COG0765	amino acid transport
CJO92_RS19550	COG1126	abc transporter atp-binding protein
CJO92_RS19555	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CJO92_RS19710	COG1649	PFAM Uncharacterised BCR, COG1649
CJO92_RS19735	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
CJO92_RS19745	COG2885	chlorophyll binding
CJO92_RS19830	COG2197	response regulator
CJO92_RS19835	COG3916	Acyl-homoserine-lactone synthase
CJO92_RS19875	COG0318	PFAM AMP-dependent synthetase and ligase
CJO92_RS19880	COG2192	nodulation
CJO92_RS19910	COG0436	Aminotransferase
CJO92_RS19915	COG0583	DNA-binding transcription factor activity
CJO92_RS19925	COG0583	DNA-binding transcription factor activity
CJO92_RS19935	COG0601	transmembrane transport
CJO92_RS19940	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CJO92_RS19945	COG0444	Belongs to the ABC transporter superfamily
CJO92_RS19950	COG4608	Belongs to the ABC transporter superfamily
CJO92_RS19970	COG2814	Major facilitator Superfamily
CJO92_RS19985	COG0587	DNA-directed DNA polymerase activity
CJO92_RS19990	COG3620	sequence-specific DNA binding
CJO92_RS19995	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
CJO92_RS20000	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
CJO92_RS20015	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
CJO92_RS20035	COG0355	proton-transporting ATP synthase activity, rotational mechanism
CJO92_RS20040	COG4206	TonB-dependent receptor
CJO92_RS20055	COG0579	oxidoreductase
CJO92_RS20075	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CJO92_RS20090	COG0697	spore germination
CJO92_RS20100	COG0583	DNA-binding transcription factor activity
CJO92_RS20110	COG0477	Major facilitator Superfamily
CJO92_RS20125	COG1335	isochorismatase
CJO92_RS20135	COG1902	pentaerythritol trinitrate reductase activity
CJO92_RS20150	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
CJO92_RS20155	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CJO92_RS20165	COG2271	Major facilitator Superfamily
CJO92_RS20175	COG2721	sulfolactate sulfo-lyase activity
CJO92_RS20180	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CJO92_RS20195	COG2271	Major facilitator Superfamily
CJO92_RS20200	COG1056	cytidyltransferase-related domain
CJO92_RS20200	COG1051	belongs to the nudix hydrolase family
CJO92_RS20230	COG0840	transmembrane signaling receptor activity
CJO92_RS20235	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
CJO92_RS20275	COG1595	DNA-templated transcription, initiation
CJO92_RS20285	COG2197	response regulator
CJO92_RS20290	COG0745	RESPONSE REGULATOR receiver
CJO92_RS20330	COG4790	Type iii secretion
CJO92_RS20345	COG4789	Type iii secretion
CJO92_RS20350	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CJO92_RS20395	COG2207	Transcriptional regulator
CJO92_RS20400	COG1450	Type ii and iii secretion system protein
CJO92_RS20405	COG4886	Leucine-rich repeat (LRR) protein
CJO92_RS20455	COG1674	ftsk spoiiie
CJO92_RS20495	COG0038	chloride channel
CJO92_RS20505	COG0495	leucyl-tRNA aminoacylation
CJO92_RS20525	COG2175	clavaminate synthase activity
CJO92_RS20555	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CJO92_RS20580	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CJO92_RS20615	COG2192	nodulation
CJO92_RS20635	COG0151	Belongs to the GarS family
CJO92_RS20645	COG2267	carboxylic ester hydrolase activity
CJO92_RS20660	COG0477	Major facilitator Superfamily
CJO92_RS20710	COG0583	DNA-binding transcription factor activity
CJO92_RS20730	COG0604	alcohol dehydrogenase
CJO92_RS20735	COG1902	pentaerythritol trinitrate reductase activity
CJO92_RS20740	COG1028	Short-chain dehydrogenase reductase Sdr
CJO92_RS20765	COG2267	carboxylic ester hydrolase activity
CJO92_RS20805	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CJO92_RS20830	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CJO92_RS20850	COG0723	plastoquinol--plastocyanin reductase activity
CJO92_RS20860	COG0640	Transcriptional regulator
CJO92_RS20865	COG0346	lactoylglutathione lyase activity
CJO92_RS20875	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CJO92_RS20880	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
CJO92_RS20890	COG0477	Major facilitator Superfamily
CJO92_RS20925	COG2207	Transcriptional regulator
CJO92_RS20930	COG1064	alcohol dehydrogenase
CJO92_RS20980	COG2801	Transposase and inactivated derivatives
CJO92_RS21005	COG0438	transferase activity, transferring glycosyl groups
CJO92_RS21035	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
CJO92_RS21040	COG2188	Transcriptional regulator
CJO92_RS21050	COG1301	dicarboxylic acid transport
CJO92_RS21090	COG0352	thiamine-phosphate diphosphorylase activity
CJO92_RS21095	COG0477	Major facilitator Superfamily
CJO92_RS21105	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
CJO92_RS21130	COG0641	radical SAM
CJO92_RS21135	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CJO92_RS21145	COG1301	dicarboxylic acid transport
CJO92_RS21155	COG0583	DNA-binding transcription factor activity
CJO92_RS21200	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CJO92_RS21210	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CJO92_RS21230	COG0110	maltose O-acetyltransferase activity
CJO92_RS21245	COG2244	polysaccharide biosynthetic process
CJO92_RS21250	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
CJO92_RS21255	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
CJO92_RS21265	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CJO92_RS21295	COG3177	Filamentation induced by cAMP protein fic
CJO92_RS21320	COG0840	transmembrane signaling receptor activity
CJO92_RS21345	COG1012	belongs to the aldehyde dehydrogenase family
CJO92_RS21350	COG0473	3-isopropylmalate dehydrogenase activity
CJO92_RS21355	COG4172	Belongs to the ABC transporter superfamily
CJO92_RS21360	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CJO92_RS21365	COG0601	transmembrane transport
CJO92_RS21370	COG0747	negative chemotaxis
CJO92_RS21375	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CJO92_RS21385	COG1012	belongs to the aldehyde dehydrogenase family
CJO92_RS21395	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CJO92_RS21405	COG1522	sequence-specific DNA binding
CJO92_RS21440	COG3023	N-Acetylmuramoyl-L-alanine amidase
CJO92_RS21450	COG1473	amidohydrolase
CJO92_RS21520	COG3220	belongs to the UPF0276 family
CJO92_RS21550	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CJO92_RS21560	COG2205	protein histidine kinase activity
CJO92_RS21595	COG2223	nitrite transmembrane transporter activity
CJO92_RS21600	COG0243	molybdopterin cofactor binding
CJO92_RS21610	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
CJO92_RS21615	COG3300	MHYT domain
CJO92_RS21615	COG5001	Diguanylate cyclase
CJO92_RS21620	COG3158	transport of potassium into the cell
CJO92_RS21625	COG1278	Cold shock
CJO92_RS21640	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
CJO92_RS21650	COG4689	acetoacetate decarboxylase
CJO92_RS21655	COG1028	Short-chain dehydrogenase reductase Sdr
CJO92_RS21665	COG0673	inositol 2-dehydrogenase activity
CJO92_RS21675	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CJO92_RS21700	COG1621	beta-fructofuranosidase activity
CJO92_RS21710	COG1609	Transcriptional regulator
CJO92_RS21785	COG3210	domain, Protein
CJO92_RS21795	COG2831	hemolysin activation secretion protein
CJO92_RS21805	COG2124	cytochrome p450
CJO92_RS21815	COG0673	inositol 2-dehydrogenase activity
CJO92_RS21870	COG4964	Belongs to the GSP D family
CJO92_RS21910	COG2197	response regulator
CJO92_RS21935	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
CJO92_RS21940	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
CJO92_RS21945	COG1877	trehalose-phosphatase activity
CJO92_RS21955	COG1846	Transcriptional regulator
CJO92_RS21960	COG1764	response to oxidative stress
CJO92_RS21975	COG0583	DNA-binding transcription factor activity
CJO92_RS21980	COG0657	acetylesterase activity
CJO92_RS21985	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CJO92_RS22045	COG0840	transmembrane signaling receptor activity
CJO92_RS22080	COG4104	PAAR repeat-containing protein
CJO92_RS22080	COG3209	COG3209 Rhs family protein
CJO92_RS22100	COG2197	response regulator
CJO92_RS22110	COG2814	Major facilitator Superfamily
CJO92_RS22115	COG4336	lyase activity
CJO92_RS22120	COG2066	Belongs to the glutaminase family
CJO92_RS22130	COG4149	molybdate abc transporter
CJO92_RS22135	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
CJO92_RS22155	COG3300	MHYT domain
CJO92_RS22155	COG5001	Diguanylate cyclase
CJO92_RS22175	COG3813	Protein conserved in bacteria
CJO92_RS22195	COG0745	RESPONSE REGULATOR receiver
CJO92_RS22200	COG2205	protein histidine kinase activity
CJO92_RS22230	COG1858	cytochrome C peroxidase
CJO92_RS22250	COG1253	flavin adenine dinucleotide binding
CJO92_RS22255	COG1858	cytochrome C peroxidase
CJO92_RS22290	COG2205	protein histidine kinase activity
CJO92_RS22290	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CJO92_RS22315	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
CJO92_RS22330	COG0800	Aldolase
CJO92_RS22335	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CJO92_RS22340	COG2197	response regulator
CJO92_RS22375	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CJO92_RS22405	COG1294	oxidase, subunit
CJO92_RS22410	COG1271	oxidase subunit
CJO92_RS22415	COG3300	MHYT domain
CJO92_RS22415	COG5001	Diguanylate cyclase
CJO92_RS22420	COG0840	transmembrane signaling receptor activity
CJO92_RS22430	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CJO92_RS22440	COG0534	Mate efflux family protein
CJO92_RS22450	COG0243	molybdopterin cofactor binding
CJO92_RS22455	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CJO92_RS22465	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CJO92_RS22470	COG2223	nitrite transmembrane transporter activity
CJO92_RS22475	COG0840	transmembrane signaling receptor activity
CJO92_RS22485	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
CJO92_RS22495	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CJO92_RS22515	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
CJO92_RS22520	COG0436	Aminotransferase
CJO92_RS22525	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
CJO92_RS22525	COG0473	3-isopropylmalate dehydrogenase activity
CJO92_RS22535	COG0583	DNA-binding transcription factor activity
CJO92_RS22560	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CJO92_RS22570	COG2353	YceI-like domain
CJO92_RS22580	COG2951	lytic endotransglycosylase activity
CJO92_RS22590	COG1271	oxidase subunit
CJO92_RS22595	COG1294	oxidase, subunit
CJO92_RS22600	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
CJO92_RS22610	COG0251	oxidation-reduction process
CJO92_RS22645	COG3550	peptidyl-serine autophosphorylation
CJO92_RS22665	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
CJO92_RS22690	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
CJO92_RS22695	COG0730	response to heat
CJO92_RS22700	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CJO92_RS22715	COG0730	response to heat
CJO92_RS22745	COG0668	transmembrane transport
CJO92_RS22750	COG1742	UPF0060 membrane protein
CJO92_RS22770	COG0477	Major facilitator Superfamily
CJO92_RS22775	COG0114	fumarate hydratase activity
CJO92_RS22825	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
CJO92_RS22845	COG3766	membrane
CJO92_RS22860	COG0683	leucine binding
CJO92_RS22885	COG4262	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
CJO92_RS22910	COG0529	Catalyzes the synthesis of activated sulfate
CJO92_RS22925	COG0457	Tetratricopeptide repeat
CJO92_RS22960	COG2824	Alkylphosphonate utilization operon protein PhnA
CJO92_RS22965	COG5298	Protein conserved in bacteria
CJO92_RS23000	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
CJO92_RS23015	COG0471	metal ion transport
CJO92_RS23025	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CJO92_RS23035	COG0762	integral membrane protein
CJO92_RS23055	COG1191	sigma factor activity
CJO92_RS23070	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CJO92_RS23080	COG1309	transcriptional regulator
CJO92_RS23085	COG2271	Major facilitator Superfamily
CJO92_RS23090	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
CJO92_RS23095	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
CJO92_RS23100	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CJO92_RS23105	COG1082	Xylose isomerase domain protein TIM barrel
CJO92_RS23105	COG3185	4-Hydroxyphenylpyruvate dioxygenase
CJO92_RS23110	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
CJO92_RS23115	COG0745	RESPONSE REGULATOR receiver
CJO92_RS23120	COG2201	protein-glutamate methylesterase activity
CJO92_RS23125	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
CJO92_RS23135	COG0840	transmembrane signaling receptor activity
CJO92_RS23140	COG0835	chemotaxis
CJO92_RS23150	COG0745	RESPONSE REGULATOR receiver
CJO92_RS23155	COG1360	Flagellar Motor Protein
CJO92_RS23205	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CJO92_RS23210	COG3384	dioxygenase
CJO92_RS23220	COG0583	DNA-binding transcription factor activity
CJO92_RS23230	COG2159	amidohydrolase
CJO92_RS23240	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CJO92_RS23250	COG5002	protein histidine kinase activity
CJO92_RS23270	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CJO92_RS23280	COG0469	pyruvate kinase activity
CJO92_RS23290	COG0583	DNA-binding transcription factor activity
CJO92_RS23320	COG1136	(ABC) transporter
CJO92_RS23325	COG0577	efflux transmembrane transporter activity
CJO92_RS23325	COG1136	(ABC) transporter
CJO92_RS23360	COG0667	Aldo Keto reductase
CJO92_RS23365	COG1064	alcohol dehydrogenase
CJO92_RS23395	COG2267	carboxylic ester hydrolase activity
CJO92_RS23455	COG1278	Cold shock
CJO92_RS23465	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
CJO92_RS23505	COG4221	oxidoreductase activity
CJO92_RS23515	COG1902	pentaerythritol trinitrate reductase activity
CJO92_RS23515	COG0446	pyridine nucleotide-disulphide oxidoreductase
CJO92_RS23545	COG2885	chlorophyll binding
CJO92_RS23575	COG0656	L-ascorbic acid biosynthetic process
CJO92_RS23600	COG4651	solute:proton antiporter activity
CJO92_RS23600	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CJO92_RS23620	COG0204	Acyl-transferase
CJO92_RS23625	COG2197	response regulator
CJO92_RS23630	COG3850	Histidine kinase
CJO92_RS23635	COG1763	Mo-molybdopterin cofactor biosynthetic process
CJO92_RS23640	COG2181	nitrate reductase activity
CJO92_RS23645	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
CJO92_RS23650	COG1140	nitrate reductase beta subunit
CJO92_RS23655	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
CJO92_RS23660	COG2223	nitrite transmembrane transporter activity
CJO92_RS23685	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CJO92_RS23695	COG3154	lipid carrier protein
CJO92_RS23700	COG0826	peptidase U32
CJO92_RS23705	COG0826	peptidase U32
CJO92_RS23710	COG2188	Transcriptional regulator
CJO92_RS23715	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
CJO92_RS23720	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CJO92_RS23750	COG2197	response regulator
CJO92_RS23760	COG0583	DNA-binding transcription factor activity
CJO92_RS23800	COG0641	radical SAM
CJO92_RS23840	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
CJO92_RS23880	COG0300	oxidoreductase activity
CJO92_RS23910	COG0456	acetyltransferase
CJO92_RS23940	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CJO92_RS23945	COG2201	protein-glutamate methylesterase activity
CJO92_RS23960	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
CJO92_RS24035	COG0546	phosphoglycolate phosphatase activity
CJO92_RS24085	COG0392	lysyltransferase activity
CJO92_RS24085	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
CJO92_RS24095	COG5001	Diguanylate cyclase
CJO92_RS24095	COG3300	MHYT domain
CJO92_RS24125	COG3491	Belongs to the iron ascorbate-dependent oxidoreductase family
CJO92_RS24155	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CJO92_RS24160	COG2831	hemolysin activation secretion protein
CJO92_RS24170	COG3210	domain, Protein
CJO92_RS24225	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CJO92_RS24230	COG0642	Histidine kinase
CJO92_RS24250	COG0837	glucose binding
CJO92_RS24260	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
CJO92_RS24285	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
CJO92_RS24290	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
CJO92_RS24295	COG1845	cytochrome c oxidase, subunit III
CJO92_RS24300	COG1845	cytochrome c oxidase, subunit III
CJO92_RS24325	COG2271	Major facilitator Superfamily
CJO92_RS24335	COG0583	DNA-binding transcription factor activity
CJO92_RS24350	COG0765	amino acid transport
CJO92_RS24355	COG0010	Belongs to the arginase family
CJO92_RS24360	COG2197	response regulator
CJO92_RS24390	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CJO92_RS24390	COG2022	thiamine diphosphate biosynthetic process
CJO92_RS24395	COG1012	belongs to the aldehyde dehydrogenase family
CJO92_RS24405	COG0583	DNA-binding transcription factor activity
CJO92_RS24410	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CJO92_RS24415	COG2814	Major facilitator Superfamily
CJO92_RS24430	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CJO92_RS24455	COG0477	Major facilitator Superfamily
CJO92_RS24460	COG0154	amidase activity
CJO92_RS24465	COG0251	oxidation-reduction process
CJO92_RS24470	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CJO92_RS24520	COG1012	belongs to the aldehyde dehydrogenase family
CJO92_RS24525	COG0473	3-isopropylmalate dehydrogenase activity
CJO92_RS24535	COG2271	Major facilitator Superfamily
CJO92_RS24540	COG2721	sulfolactate sulfo-lyase activity
CJO92_RS24550	COG1475	DNA binding
CJO92_RS24560	COG3969	phosphoadenosine phosphosulfate
CJO92_RS24575	COG2205	protein histidine kinase activity
CJO92_RS24575	COG0784	Response regulator, receiver
CJO92_RS24580	COG5001	Diguanylate cyclase
CJO92_RS24580	COG4251	negative regulation of phosphorylation
CJO92_RS24580	COG3706	GGDEF domain
CJO92_RS24580	COG2203	Gaf domain
CJO92_RS24585	COG1513	Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide
CJO92_RS24595	COG4213	ABC transporter substrate-binding protein
CJO92_RS24600	COG1129	ABC transporter
CJO92_RS24605	COG4214	carbohydrate transport
CJO92_RS24610	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CJO92_RS24615	COG1609	Transcriptional regulator
CJO92_RS24625	COG2207	Transcriptional regulator
CJO92_RS24630	COG0300	oxidoreductase activity
CJO92_RS24665	COG5001	Diguanylate cyclase
CJO92_RS24665	COG4251	negative regulation of phosphorylation
CJO92_RS24665	COG3706	GGDEF domain
CJO92_RS24665	COG2203	Gaf domain
CJO92_RS24695	COG0840	transmembrane signaling receptor activity
CJO92_RS24735	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CJO92_RS24745	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CJO92_RS24765	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
CJO92_RS24790	COG2204	response regulator
CJO92_RS24805	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
CJO92_RS24830	COG2205	protein histidine kinase activity