locus-tag class description CJO90_RS00005 PF00308 Bacterial dnaA protein CJO90_RS00005 PF11638 DnaA N-terminal domain CJO90_RS00005 PF08299 Bacterial dnaA protein helix-turn-helix CJO90_RS00010 PF02767 DNA polymerase III beta subunit, central domain CJO90_RS00010 PF02768 DNA polymerase III beta subunit, C-terminal domain CJO90_RS00010 PF00712 DNA polymerase III beta subunit, N-terminal domain CJO90_RS00015 PF01751 Toprim domain CJO90_RS00015 PF00204 DNA gyrase B CJO90_RS00015 PF00986 DNA gyrase B subunit, carboxyl terminus CJO90_RS00015 PF18053 DNA gyrase B subunit insert domain CJO90_RS00015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS00050 PF13737 Transposase DDE domain CJO90_RS00125 PF01062 Bestrophin, RFP-TM, chloride channel CJO90_RS00130 PF02661 Fic/DOC family CJO90_RS00135 PF02203 Tar ligand binding domain homologue CJO90_RS00135 PF00672 HAMP domain CJO90_RS00135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO90_RS00150 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS00155 PF00005 ABC transporter CJO90_RS00160 PF01266 FAD dependent oxidoreductase CJO90_RS00175 PF00072 Response regulator receiver domain CJO90_RS00175 PF00486 Transcriptional regulatory protein, C terminal CJO90_RS00180 PF00512 His Kinase A (phospho-acceptor) domain CJO90_RS00180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS00180 PF08521 Two-component sensor kinase N-terminal CJO90_RS00195 PF07690 Major Facilitator Superfamily CJO90_RS00210 PF00970 Oxidoreductase FAD-binding domain CJO90_RS00210 PF00175 Oxidoreductase NAD-binding domain CJO90_RS00210 PF00042 Globin CJO90_RS00215 PF02082 Transcriptional regulator CJO90_RS00220 PF12161 HsdM N-terminal domain CJO90_RS00220 PF02384 N-6 DNA Methylase CJO90_RS00235 PF00512 His Kinase A (phospho-acceptor) domain CJO90_RS00235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS00240 PF00072 Response regulator receiver domain CJO90_RS00240 PF00486 Transcriptional regulatory protein, C terminal CJO90_RS00265 PF00360 Phytochrome region CJO90_RS00265 PF00990 Diguanylate cyclase, GGDEF domain CJO90_RS00265 PF01590 GAF domain CJO90_RS00265 PF00563 EAL domain CJO90_RS00270 PF03180 NLPA lipoprotein CJO90_RS00275 PF00512 His Kinase A (phospho-acceptor) domain CJO90_RS00275 PF02702 Osmosensitive K+ channel His kinase sensor domain CJO90_RS00275 PF13493 Domain of unknown function (DUF4118) CJO90_RS00275 PF13492 GAF domain CJO90_RS00275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS00280 PF02669 K+-transporting ATPase, c chain CJO90_RS00290 PF03814 Potassium-transporting ATPase A subunit CJO90_RS00325 PF01048 Phosphorylase superfamily CJO90_RS00335 PF00005 ABC transporter CJO90_RS00345 PF00708 Acylphosphatase CJO90_RS00355 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CJO90_RS00360 PF02515 CoA-transferase family III CJO90_RS00375 PF03776 Septum formation topological specificity factor MinE CJO90_RS00380 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CJO90_RS00385 PF03775 Septum formation inhibitor MinC, C-terminal domain CJO90_RS00385 PF05209 Septum formation inhibitor MinC, N-terminal domain CJO90_RS00390 PF00149 Calcineurin-like phosphoesterase CJO90_RS00390 PF02872 5'-nucleotidase, C-terminal domain CJO90_RS00400 PF08546 Ketopantoate reductase PanE/ApbA C terminal CJO90_RS00400 PF02558 Ketopantoate reductase PanE/ApbA CJO90_RS00410 PF00216 Bacterial DNA-binding protein CJO90_RS00425 PF01329 Pterin 4 alpha carbinolamine dehydratase CJO90_RS00430 PF00351 Biopterin-dependent aromatic amino acid hydroxylase CJO90_RS00435 PF01037 Lrp/AsnC ligand binding domain CJO90_RS00440 PF07947 YhhN family CJO90_RS00445 PF02423 Ornithine cyclodeaminase/mu-crystallin family CJO90_RS00450 PF03922 OmpW family CJO90_RS00465 PF09278 MerR, DNA binding CJO90_RS00465 PF00376 MerR family regulatory protein CJO90_RS00470 PF12147 Putative methyltransferase CJO90_RS00470 PF12146 Serine aminopeptidase, S33 CJO90_RS00475 PF05199 GMC oxidoreductase CJO90_RS00475 PF00732 GMC oxidoreductase CJO90_RS00480 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJO90_RS00480 PF00005 ABC transporter CJO90_RS00485 PF00005 ABC transporter CJO90_RS00495 PF02653 Branched-chain amino acid transport system / permease component CJO90_RS00515 PF01925 Sulfite exporter TauE/SafE CJO90_RS00535 PF12843 Putative quorum-sensing-regulated virulence factor CJO90_RS00540 PF03466 LysR substrate binding domain CJO90_RS00540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS00560 PF01134 Glucose inhibited division protein A CJO90_RS00560 PF13932 GidA associated domain CJO90_RS00565 PF02527 rRNA small subunit methyltransferase G CJO90_RS00570 PF13614 AAA domain CJO90_RS00575 PF17762 HTH domain found in ParB protein CJO90_RS00575 PF02195 ParB-like nuclease domain CJO90_RS00585 PF00119 ATP synthase A chain CJO90_RS00590 PF00137 ATP synthase subunit C CJO90_RS00595 PF00430 ATP synthase B/B' CF(0) CJO90_RS00600 PF00213 ATP synthase delta (OSCP) subunit CJO90_RS00605 PF02874 ATP synthase alpha/beta family, beta-barrel domain CJO90_RS00605 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJO90_RS00605 PF00306 ATP synthase alpha/beta chain, C terminal domain CJO90_RS00610 PF00231 ATP synthase CJO90_RS00615 PF02874 ATP synthase alpha/beta family, beta-barrel domain CJO90_RS00615 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJO90_RS00620 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CJO90_RS00620 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CJO90_RS00635 PF13380 CoA binding domain CJO90_RS00640 PF07859 alpha/beta hydrolase fold CJO90_RS00650 PF12849 PBP superfamily domain CJO90_RS00655 PF00043 Glutathione S-transferase, C-terminal domain CJO90_RS00655 PF02798 Glutathione S-transferase, N-terminal domain CJO90_RS00665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO90_RS00665 PF00672 HAMP domain CJO90_RS00665 PF02743 Cache domain CJO90_RS00685 PF01208 Uroporphyrinogen decarboxylase (URO-D) CJO90_RS00690 PF00270 DEAD/DEAH box helicase CJO90_RS00690 PF00271 Helicase conserved C-terminal domain CJO90_RS00690 PF17764 3′ DNA-binding domain (3′BD) CJO90_RS00690 PF18074 Primosomal protein N C-terminal domain CJO90_RS00690 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CJO90_RS00695 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CJO90_RS00695 PF01619 Proline dehydrogenase CJO90_RS00695 PF00171 Aldehyde dehydrogenase family CJO90_RS00695 PF14850 DNA-binding domain of Proline dehydrogenase CJO90_RS00700 PF13458 Periplasmic binding protein CJO90_RS00710 PF04107 Glutamate-cysteine ligase family 2(GCS2) CJO90_RS00715 PF03169 OPT oligopeptide transporter protein CJO90_RS00720 PF03313 Serine dehydratase alpha chain CJO90_RS00720 PF03315 Serine dehydratase beta chain CJO90_RS00725 PF02347 Glycine cleavage system P-protein CJO90_RS00730 PF01597 Glycine cleavage H-protein CJO90_RS00735 PF01571 Aminomethyltransferase folate-binding domain CJO90_RS00735 PF08669 Glycine cleavage T-protein C-terminal barrel domain CJO90_RS00755 PF13361 UvrD-like helicase C-terminal domain CJO90_RS00755 PF00580 UvrD/REP helicase N-terminal domain CJO90_RS00775 PF03472 Autoinducer binding domain CJO90_RS00775 PF00196 Bacterial regulatory proteins, luxR family CJO90_RS00780 PF00765 Autoinducer synthase CJO90_RS00790 PF04055 Radical SAM superfamily CJO90_RS00790 PF06969 HemN C-terminal domain CJO90_RS00795 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CJO90_RS00795 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CJO90_RS00800 PF01261 Xylose isomerase-like TIM barrel CJO90_RS00805 PF00205 Thiamine pyrophosphate enzyme, central domain CJO90_RS00805 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CJO90_RS00805 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CJO90_RS00810 PF03466 LysR substrate binding domain CJO90_RS00810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS00835 PF00375 Sodium:dicarboxylate symporter family CJO90_RS00840 PF03561 Allantoicase repeat CJO90_RS00845 PF04115 Ureidoglycolate lyase CJO90_RS00850 PF07687 Peptidase dimerisation domain CJO90_RS00850 PF01546 Peptidase family M20/M25/M40 CJO90_RS00860 PF03960 ArsC family CJO90_RS00875 PF00753 Metallo-beta-lactamase superfamily CJO90_RS00880 PF05036 Sporulation related domain CJO90_RS00880 PF03330 Lytic transglycolase CJO90_RS00885 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJO90_RS00890 PF02021 Uncharacterised protein family UPF0102 CJO90_RS00905 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding CJO90_RS00905 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO90_RS00905 PF10518 TAT (twin-arginine translocation) pathway signal sequence CJO90_RS00910 PF00892 EamA-like transporter family CJO90_RS00945 PF08534 Redoxin CJO90_RS00950 PF02872 5'-nucleotidase, C-terminal domain CJO90_RS00950 PF00149 Calcineurin-like phosphoesterase CJO90_RS00990 PF00239 Resolvase, N terminal domain CJO90_RS00990 PF02796 Helix-turn-helix domain of resolvase CJO90_RS01010 PF12728 Helix-turn-helix domain CJO90_RS01070 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH CJO90_RS01090 PF01555 DNA methylase CJO90_RS01095 PF18755 Restriction Enzyme Adenine Methylase Associated CJO90_RS01095 PF01555 DNA methylase CJO90_RS01195 PF00816 H-NS histone family CJO90_RS01205 PF05598 Transposase domain (DUF772) CJO90_RS01205 PF01609 Transposase DDE domain CJO90_RS01295 PF08479 POTRA domain, ShlB-type CJO90_RS01295 PF17287 POTRA domain CJO90_RS01295 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CJO90_RS01305 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CJO90_RS01370 PF00072 Response regulator receiver domain CJO90_RS01370 PF00196 Bacterial regulatory proteins, luxR family CJO90_RS01380 PF05175 Methyltransferase small domain CJO90_RS01385 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO90_RS01385 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CJO90_RS01400 PF13006 Insertion element 4 transposase N-terminal CJO90_RS01400 PF01609 Transposase DDE domain CJO90_RS01405 PF00313 'Cold-shock' DNA-binding domain CJO90_RS01425 PF01609 Transposase DDE domain CJO90_RS01425 PF05598 Transposase domain (DUF772) CJO90_RS01450 PF01381 Helix-turn-helix CJO90_RS01475 PF00990 Diguanylate cyclase, GGDEF domain CJO90_RS01475 PF00360 Phytochrome region CJO90_RS01475 PF00563 EAL domain CJO90_RS01475 PF01590 GAF domain CJO90_RS01490 PF13180 PDZ domain CJO90_RS01500 PF00106 short chain dehydrogenase CJO90_RS01510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO90_RS01510 PF00672 HAMP domain CJO90_RS01510 PF02203 Tar ligand binding domain homologue CJO90_RS01535 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CJO90_RS01535 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CJO90_RS01540 PF00107 Zinc-binding dehydrogenase CJO90_RS01540 PF08240 Alcohol dehydrogenase GroES-like domain CJO90_RS01545 PF02954 Bacterial regulatory protein, Fis family CJO90_RS01545 PF00158 Sigma-54 interaction domain CJO90_RS01545 PF01590 GAF domain CJO90_RS01550 PF00171 Aldehyde dehydrogenase family CJO90_RS01555 PF06751 Ethanolamine ammonia lyase large subunit (EutB) CJO90_RS01560 PF05985 Ethanolamine ammonia-lyase light chain (EutC) CJO90_RS01565 PF00929 Exonuclease CJO90_RS01565 PF08411 Exonuclease C-terminal CJO90_RS01595 PF00392 Bacterial regulatory proteins, gntR family CJO90_RS01595 PF00155 Aminotransferase class I and II CJO90_RS01610 PF00482 Type II secretion system (T2SS), protein F CJO90_RS01615 PF00437 Type II/IV secretion system protein CJO90_RS01620 PF03958 Bacterial type II/III secretion system short domain CJO90_RS01620 PF00263 Bacterial type II and III secretion system protein CJO90_RS01645 PF11612 Type II secretion system (T2SS), protein J CJO90_RS01645 PF07963 Prokaryotic N-terminal methylation motif CJO90_RS01650 PF07963 Prokaryotic N-terminal methylation motif CJO90_RS01650 PF02501 Type II secretion system (T2SS), protein I CJO90_RS01655 PF07963 Prokaryotic N-terminal methylation motif CJO90_RS01655 PF12019 Type II transport protein GspH CJO90_RS01675 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CJO90_RS01680 PF01037 Lrp/AsnC ligand binding domain CJO90_RS01710 PF02525 Flavodoxin-like fold CJO90_RS01715 PF02254 TrkA-N domain CJO90_RS01715 PF00999 Sodium/hydrogen exchanger family CJO90_RS01740 PF01546 Peptidase family M20/M25/M40 CJO90_RS01740 PF07687 Peptidase dimerisation domain CJO90_RS01750 PF13609 Gram-negative porin CJO90_RS01755 PF13006 Insertion element 4 transposase N-terminal CJO90_RS01755 PF01609 Transposase DDE domain CJO90_RS01760 PF03401 Tripartite tricarboxylate transporter family receptor CJO90_RS01765 PF00486 Transcriptional regulatory protein, C terminal CJO90_RS01765 PF00072 Response regulator receiver domain CJO90_RS01770 PF01355 High potential iron-sulfur protein CJO90_RS01790 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CJO90_RS01815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS01815 PF00512 His Kinase A (phospho-acceptor) domain CJO90_RS01815 PF00072 Response regulator receiver domain CJO90_RS01815 PF09456 RcsC Alpha-Beta-Loop (ABL) CJO90_RS01820 PF00072 Response regulator receiver domain CJO90_RS01820 PF00196 Bacterial regulatory proteins, luxR family CJO90_RS01825 PF01545 Cation efflux family CJO90_RS01825 PF16916 Dimerisation domain of Zinc Transporter CJO90_RS01860 PF07690 Major Facilitator Superfamily CJO90_RS01865 PF00924 Mechanosensitive ion channel CJO90_RS01880 PF00486 Transcriptional regulatory protein, C terminal CJO90_RS01880 PF00072 Response regulator receiver domain CJO90_RS01885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS01885 PF00672 HAMP domain CJO90_RS01885 PF00512 His Kinase A (phospho-acceptor) domain CJO90_RS01900 PF07690 Major Facilitator Superfamily CJO90_RS01905 PF07690 Major Facilitator Superfamily CJO90_RS01920 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CJO90_RS01940 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CJO90_RS01940 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CJO90_RS01955 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS01960 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS01965 PF17912 MalK OB fold domain CJO90_RS01965 PF00005 ABC transporter CJO90_RS01970 PF00005 ABC transporter CJO90_RS01970 PF17912 MalK OB fold domain CJO90_RS01975 PF01266 FAD dependent oxidoreductase CJO90_RS01975 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CJO90_RS01980 PF00455 DeoR C terminal sensor domain CJO90_RS01980 PF08220 DeoR-like helix-turn-helix domain CJO90_RS02030 PF00009 Elongation factor Tu GTP binding domain CJO90_RS02030 PF03143 Elongation factor Tu C-terminal domain CJO90_RS02030 PF03144 Elongation factor Tu domain 2 CJO90_RS02045 PF02357 Transcription termination factor nusG CJO90_RS02045 PF00467 KOW motif CJO90_RS02050 PF03946 Ribosomal protein L11, N-terminal domain CJO90_RS02050 PF00298 Ribosomal protein L11, RNA binding domain CJO90_RS02055 PF00687 Ribosomal protein L1p/L10e family CJO90_RS02060 PF00466 Ribosomal protein L10 CJO90_RS02065 PF16320 Ribosomal protein L7/L12 dimerisation domain CJO90_RS02065 PF00542 Ribosomal protein L7/L12 C-terminal domain CJO90_RS02070 PF04563 RNA polymerase beta subunit CJO90_RS02070 PF04560 RNA polymerase Rpb2, domain 7 CJO90_RS02070 PF04565 RNA polymerase Rpb2, domain 3 CJO90_RS02070 PF10385 RNA polymerase beta subunit external 1 domain CJO90_RS02070 PF04561 RNA polymerase Rpb2, domain 2 CJO90_RS02070 PF00562 RNA polymerase Rpb2, domain 6 CJO90_RS02075 PF04983 RNA polymerase Rpb1, domain 3 CJO90_RS02075 PF04998 RNA polymerase Rpb1, domain 5 CJO90_RS02075 PF04997 RNA polymerase Rpb1, domain 1 CJO90_RS02075 PF05000 RNA polymerase Rpb1, domain 4 CJO90_RS02075 PF00623 RNA polymerase Rpb1, domain 2 CJO90_RS02080 PF09909 Uncharacterized protein conserved in bacteria (DUF2138) CJO90_RS02085 PF06672 Protein of unknown function (DUF1175) CJO90_RS02090 PF07703 Alpha-2-macroglobulin bait region domain CJO90_RS02090 PF01835 MG2 domain CJO90_RS02090 PF00207 Alpha-2-macroglobulin family CJO90_RS02095 PF10062 Predicted secreted protein (DUF2300) CJO90_RS02095 PF08486 Stage II sporulation protein CJO90_RS02100 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) CJO90_RS02105 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) CJO90_RS02115 PF00570 HRDC domain CJO90_RS02115 PF16124 RecQ zinc-binding CJO90_RS02115 PF09382 RQC domain CJO90_RS02115 PF00271 Helicase conserved C-terminal domain CJO90_RS02115 PF00270 DEAD/DEAH box helicase CJO90_RS02120 PF00164 Ribosomal protein S12/S23 CJO90_RS02125 PF00177 Ribosomal protein S7p/S5e CJO90_RS02130 PF03144 Elongation factor Tu domain 2 CJO90_RS02130 PF00009 Elongation factor Tu GTP binding domain CJO90_RS02130 PF03764 Elongation factor G, domain IV CJO90_RS02130 PF14492 Elongation Factor G, domain II CJO90_RS02130 PF00679 Elongation factor G C-terminus CJO90_RS02135 PF03143 Elongation factor Tu C-terminal domain CJO90_RS02135 PF03144 Elongation factor Tu domain 2 CJO90_RS02135 PF00009 Elongation factor Tu GTP binding domain CJO90_RS02140 PF00338 Ribosomal protein S10p/S20e CJO90_RS02145 PF00297 Ribosomal protein L3 CJO90_RS02150 PF00573 Ribosomal protein L4/L1 family CJO90_RS02155 PF00276 Ribosomal protein L23 CJO90_RS02160 PF03947 Ribosomal Proteins L2, C-terminal domain CJO90_RS02160 PF00181 Ribosomal Proteins L2, RNA binding domain CJO90_RS02165 PF00203 Ribosomal protein S19 CJO90_RS02170 PF00237 Ribosomal protein L22p/L17e CJO90_RS02175 PF07650 KH domain CJO90_RS02175 PF00189 Ribosomal protein S3, C-terminal domain CJO90_RS02180 PF00252 Ribosomal protein L16p/L10e CJO90_RS02185 PF00831 Ribosomal L29 protein CJO90_RS02190 PF00366 Ribosomal protein S17 CJO90_RS02195 PF00238 Ribosomal protein L14p/L23e CJO90_RS02200 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CJO90_RS02205 PF00673 ribosomal L5P family C-terminus CJO90_RS02205 PF00281 Ribosomal protein L5 CJO90_RS02210 PF00253 Ribosomal protein S14p/S29e CJO90_RS02215 PF00410 Ribosomal protein S8 CJO90_RS02220 PF00347 Ribosomal protein L6 CJO90_RS02225 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CJO90_RS02230 PF00333 Ribosomal protein S5, N-terminal domain CJO90_RS02230 PF03719 Ribosomal protein S5, C-terminal domain CJO90_RS02235 PF00327 Ribosomal protein L30p/L7e CJO90_RS02240 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CJO90_RS02245 PF00344 SecY translocase CJO90_RS02250 PF01176 Translation initiation factor 1A / IF-1 CJO90_RS02255 PF00444 Ribosomal protein L36 CJO90_RS02260 PF00416 Ribosomal protein S13/S18 CJO90_RS02265 PF00411 Ribosomal protein S11 CJO90_RS02270 PF00163 Ribosomal protein S4/S9 N-terminal domain CJO90_RS02270 PF01479 S4 domain CJO90_RS02275 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CJO90_RS02275 PF01000 RNA polymerase Rpb3/RpoA insert domain CJO90_RS02275 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CJO90_RS02280 PF01196 Ribosomal protein L17 CJO90_RS02295 PF00490 Delta-aminolevulinic acid dehydratase CJO90_RS02300 PF01926 50S ribosome-binding GTPase CJO90_RS02305 PF00034 Cytochrome c CJO90_RS02310 PF05140 ResB-like family CJO90_RS02315 PF01578 Cytochrome C assembly protein CJO90_RS02325 PF08281 Sigma-70, region 4 CJO90_RS02325 PF04542 Sigma-70 region 2 CJO90_RS02335 PF00174 Oxidoreductase molybdopterin binding domain CJO90_RS02340 PF01794 Ferric reductase like transmembrane component CJO90_RS02355 PF01491 Frataxin-like domain CJO90_RS02360 PF01609 Transposase DDE domain CJO90_RS02360 PF13006 Insertion element 4 transposase N-terminal CJO90_RS02365 PF00912 Transglycosylase CJO90_RS02365 PF17092 Penicillin-binding protein OB-like domain CJO90_RS02365 PF00905 Penicillin binding protein transpeptidase domain CJO90_RS02370 PF11104 Type IV pilus assembly protein PilM; CJO90_RS02375 PF05137 Fimbrial assembly protein (PilN) CJO90_RS02390 PF03958 Bacterial type II/III secretion system short domain CJO90_RS02390 PF07660 Secretin and TonB N terminus short domain CJO90_RS02390 PF11741 AMIN domain CJO90_RS02390 PF00263 Bacterial type II and III secretion system protein CJO90_RS02395 PF01202 Shikimate kinase CJO90_RS02400 PF01761 3-dehydroquinate synthase CJO90_RS02405 PF01966 HD domain CJO90_RS02405 PF13286 Phosphohydrolase-associated domain CJO90_RS02410 PF03922 OmpW family CJO90_RS02420 PF04898 Glutamate synthase central domain CJO90_RS02420 PF01493 GXGXG motif CJO90_RS02420 PF01645 Conserved region in glutamate synthase CJO90_RS02420 PF00310 Glutamine amidotransferases class-II CJO90_RS02425 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO90_RS02425 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CJO90_RS02430 PF03401 Tripartite tricarboxylate transporter family receptor CJO90_RS02435 PF00005 ABC transporter CJO90_RS02440 PF02405 Permease MlaE CJO90_RS02445 PF02470 MlaD protein CJO90_RS02450 PF04333 MlaA lipoprotein CJO90_RS02465 PF00005 ABC transporter CJO90_RS02470 PF01061 ABC-2 type transporter CJO90_RS02480 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CJO90_RS02485 PF01634 ATP phosphoribosyltransferase CJO90_RS02490 PF00815 Histidinol dehydrogenase CJO90_RS02495 PF00155 Aminotransferase class I and II CJO90_RS02500 PF00475 Imidazoleglycerol-phosphate dehydratase CJO90_RS02505 PF01914 MarC family integral membrane protein CJO90_RS02510 PF00117 Glutamine amidotransferase class-I CJO90_RS02515 PF00977 Histidine biosynthesis protein CJO90_RS02520 PF00977 Histidine biosynthesis protein CJO90_RS02525 PF01502 Phosphoribosyl-AMP cyclohydrolase CJO90_RS02530 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CJO90_RS02540 PF02416 mttA/Hcf106 family CJO90_RS02545 PF02416 mttA/Hcf106 family CJO90_RS02550 PF00902 Sec-independent protein translocase protein (TatC) CJO90_RS02555 PF03459 TOBE domain CJO90_RS02555 PF00005 ABC transporter CJO90_RS02555 PF17912 MalK OB fold domain CJO90_RS02560 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS02570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS02570 PF00512 His Kinase A (phospho-acceptor) domain CJO90_RS02575 PF00072 Response regulator receiver domain CJO90_RS02575 PF00486 Transcriptional regulatory protein, C terminal CJO90_RS02585 PF13609 Gram-negative porin CJO90_RS02590 PF17820 PDZ domain CJO90_RS02590 PF13180 PDZ domain CJO90_RS02595 PF01784 NIF3 (NGG1p interacting factor 3) CJO90_RS02600 PF01741 Large-conductance mechanosensitive channel, MscL CJO90_RS02605 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CJO90_RS02605 PF00355 Rieske [2Fe-2S] domain CJO90_RS02610 PF00033 Cytochrome b/b6/petB CJO90_RS02610 PF00032 Cytochrome b(C-terminal)/b6/petD CJO90_RS02615 PF02167 Cytochrome C1 family CJO90_RS02620 PF02798 Glutathione S-transferase, N-terminal domain CJO90_RS02620 PF00043 Glutathione S-transferase, C-terminal domain CJO90_RS02625 PF04386 Stringent starvation protein B CJO90_RS02640 PF00072 Response regulator receiver domain CJO90_RS02640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS02655 PF07715 TonB-dependent Receptor Plug Domain CJO90_RS02655 PF00593 TonB dependent receptor CJO90_RS02660 PF04773 FecR protein CJO90_RS02660 PF16220 Domain of unknown function (DUF4880) CJO90_RS02670 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CJO90_RS02670 PF06481 COX Aromatic Rich Motif CJO90_RS02675 PF00115 Cytochrome C and Quinol oxidase polypeptide I CJO90_RS02680 PF00510 Cytochrome c oxidase subunit III CJO90_RS02685 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CJO90_RS02690 PF12848 ABC transporter CJO90_RS02690 PF00005 ABC transporter CJO90_RS02710 PF00535 Glycosyl transferase family 2 CJO90_RS02715 PF04349 Periplasmic glucan biosynthesis protein, MdoG CJO90_RS02725 PF02441 Flavoprotein CJO90_RS02730 PF00462 Glutaredoxin CJO90_RS02735 PF17827 PrmC N-terminal domain CJO90_RS02735 PF05175 Methyltransferase small domain CJO90_RS02745 PF00472 RF-1 domain CJO90_RS02745 PF03462 PCRF domain CJO90_RS02750 PF01488 Shikimate / quinate 5-dehydrogenase CJO90_RS02750 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CJO90_RS02750 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CJO90_RS02760 PF06071 Protein of unknown function (DUF933) CJO90_RS02760 PF01926 50S ribosome-binding GTPase CJO90_RS02770 PF01464 Transglycosylase SLT domain CJO90_RS02785 PF01494 FAD binding domain CJO90_RS02790 PF13098 Thioredoxin-like domain CJO90_RS02790 PF10411 Disulfide bond isomerase protein N-terminus CJO90_RS02795 PF00107 Zinc-binding dehydrogenase CJO90_RS02795 PF08240 Alcohol dehydrogenase GroES-like domain CJO90_RS02805 PF12805 FUSC-like inner membrane protein yccS CJO90_RS02820 PF03167 Uracil DNA glycosylase superfamily CJO90_RS02830 PF00218 Indole-3-glycerol phosphate synthase CJO90_RS02835 PF02885 Glycosyl transferase family, helical bundle domain CJO90_RS02835 PF00591 Glycosyl transferase family, a/b domain CJO90_RS02845 PF00117 Glutamine amidotransferase class-I CJO90_RS02850 PF04715 Anthranilate synthase component I, N terminal region CJO90_RS02850 PF00425 chorismate binding enzyme CJO90_RS02855 PF13419 Haloacid dehalogenase-like hydrolase CJO90_RS02860 PF00834 Ribulose-phosphate 3 epimerase family CJO90_RS02865 PF04379 ApaG domain CJO90_RS02880 PF00501 AMP-binding enzyme CJO90_RS02880 PF14535 AMP-binding enzyme C-terminal domain CJO90_RS02885 PF03061 Thioesterase superfamily CJO90_RS02890 PF00378 Enoyl-CoA hydratase/isomerase CJO90_RS02895 PF00378 Enoyl-CoA hydratase/isomerase CJO90_RS02925 PF07687 Peptidase dimerisation domain CJO90_RS02925 PF01546 Peptidase family M20/M25/M40 CJO90_RS02935 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS02940 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS02940 PF12911 N-terminal TM domain of oligopeptide transport permease C CJO90_RS02945 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJO90_RS02945 PF00005 ABC transporter CJO90_RS02950 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJO90_RS02950 PF00005 ABC transporter CJO90_RS02955 PF13006 Insertion element 4 transposase N-terminal CJO90_RS02955 PF01609 Transposase DDE domain CJO90_RS02965 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CJO90_RS02970 PF00294 pfkB family carbohydrate kinase CJO90_RS02975 PF00381 PTS HPr component phosphorylation site CJO90_RS02975 PF02896 PEP-utilising enzyme, TIM barrel domain CJO90_RS02975 PF00391 PEP-utilising enzyme, mobile domain CJO90_RS02975 PF05524 PEP-utilising enzyme, N-terminal CJO90_RS02975 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CJO90_RS02980 PF00356 Bacterial regulatory proteins, lacI family CJO90_RS02985 PF00384 Molybdopterin oxidoreductase CJO90_RS02985 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CJO90_RS02985 PF01568 Molydopterin dinucleotide binding domain CJO90_RS02995 PF13193 AMP-binding enzyme C-terminal domain CJO90_RS02995 PF00501 AMP-binding enzyme CJO90_RS03000 PF00083 Sugar (and other) transporter CJO90_RS03000 PF07690 Major Facilitator Superfamily CJO90_RS03005 PF13609 Gram-negative porin CJO90_RS03010 PF03232 Ubiquinone biosynthesis protein COQ7 CJO90_RS03015 PF02381 MraZ protein, putative antitoxin-like CJO90_RS03020 PF01795 MraW methylase family CJO90_RS03030 PF03717 Penicillin-binding Protein dimerisation domain CJO90_RS03030 PF00905 Penicillin binding protein transpeptidase domain CJO90_RS03035 PF08245 Mur ligase middle domain CJO90_RS03035 PF02875 Mur ligase family, glutamate ligase domain CJO90_RS03040 PF08245 Mur ligase middle domain CJO90_RS03040 PF02875 Mur ligase family, glutamate ligase domain CJO90_RS03040 PF01225 Mur ligase family, catalytic domain CJO90_RS03045 PF00953 Glycosyl transferase family 4 CJO90_RS03045 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CJO90_RS03050 PF08245 Mur ligase middle domain CJO90_RS03050 PF02875 Mur ligase family, glutamate ligase domain CJO90_RS03055 PF01098 Cell cycle protein CJO90_RS03060 PF04101 Glycosyltransferase family 28 C-terminal domain CJO90_RS03060 PF03033 Glycosyltransferase family 28 N-terminal domain CJO90_RS03065 PF01225 Mur ligase family, catalytic domain CJO90_RS03065 PF02875 Mur ligase family, glutamate ligase domain CJO90_RS03065 PF08245 Mur ligase middle domain CJO90_RS03070 PF07478 D-ala D-ala ligase C-terminus CJO90_RS03070 PF01820 D-ala D-ala ligase N-terminus CJO90_RS03075 PF08478 POTRA domain, FtsQ-type CJO90_RS03075 PF03799 Cell division protein FtsQ CJO90_RS03080 PF02491 SHS2 domain inserted in FTSA CJO90_RS03085 PF00091 Tubulin/FtsZ family, GTPase domain CJO90_RS03085 PF12327 FtsZ family, C-terminal domain CJO90_RS03090 PF08534 Redoxin CJO90_RS03095 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CJO90_RS03105 PF01551 Peptidase family M23 CJO90_RS03105 PF01476 LysM domain CJO90_RS03105 PF08525 Opacity-associated protein A N-terminal motif CJO90_RS03110 PF02810 SEC-C motif CJO90_RS03110 PF07517 SecA DEAD-like domain CJO90_RS03110 PF07516 SecA Wing and Scaffold domain CJO90_RS03110 PF01043 SecA preprotein cross-linking domain CJO90_RS03115 PF01960 ArgJ family CJO90_RS03125 PF00293 NUDIX domain CJO90_RS03130 PF03884 DNA gyrase inhibitor YacG CJO90_RS03135 PF07072 Cell division protein CJO90_RS03140 PF01121 Dephospho-CoA kinase CJO90_RS03145 PF06750 Bacterial Peptidase A24 N-terminal domain CJO90_RS03145 PF01478 Type IV leader peptidase family CJO90_RS03150 PF00482 Type II secretion system (T2SS), protein F CJO90_RS03155 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CJO90_RS03155 PF00437 Type II/IV secretion system protein CJO90_RS03160 PF01595 Cyclin M transmembrane N-terminal domain CJO90_RS03160 PF03471 Transporter associated domain CJO90_RS03160 PF00571 CBS domain CJO90_RS03170 PF00348 Polyprenyl synthetase CJO90_RS03175 PF00829 Ribosomal prokaryotic L21 protein CJO90_RS03180 PF01016 Ribosomal L27 protein CJO90_RS03185 PF01018 GTP1/OBG CJO90_RS03185 PF01926 50S ribosome-binding GTPase CJO90_RS03190 PF00696 Amino acid kinase family CJO90_RS03190 PF01472 PUA domain CJO90_RS03200 PF00293 NUDIX domain CJO90_RS03205 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CJO90_RS03205 PF03129 Anticodon binding domain CJO90_RS03205 PF04073 Aminoacyl-tRNA editing domain CJO90_RS03210 PF01464 Transglycosylase SLT domain CJO90_RS03220 PF01914 MarC family integral membrane protein CJO90_RS03225 PF00156 Phosphoribosyl transferase domain CJO90_RS03230 PF00448 SRP54-type protein, GTPase domain CJO90_RS03230 PF02881 SRP54-type protein, helical bundle domain CJO90_RS03230 PF02978 Signal peptide binding domain CJO90_RS03245 PF00512 His Kinase A (phospho-acceptor) domain CJO90_RS03245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS03250 PF02954 Bacterial regulatory protein, Fis family CJO90_RS03250 PF00072 Response regulator receiver domain CJO90_RS03250 PF00158 Sigma-54 interaction domain CJO90_RS03260 PF00317 Ribonucleotide reductase, all-alpha domain CJO90_RS03260 PF03477 ATP cone domain CJO90_RS03260 PF02867 Ribonucleotide reductase, barrel domain CJO90_RS03270 PF13737 Transposase DDE domain CJO90_RS03340 PF06715 Gp5 C-terminal repeat (3 copies) CJO90_RS03340 PF04717 Type VI secretion system, phage-baseplate injector CJO90_RS03390 PF05598 Transposase domain (DUF772) CJO90_RS03390 PF01609 Transposase DDE domain CJO90_RS03410 PF00268 Ribonucleotide reductase, small chain CJO90_RS03420 PF00892 EamA-like transporter family CJO90_RS03425 PF01037 Lrp/AsnC ligand binding domain CJO90_RS03435 PF02203 Tar ligand binding domain homologue CJO90_RS03435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO90_RS03435 PF00672 HAMP domain CJO90_RS03480 PF00294 pfkB family carbohydrate kinase CJO90_RS03485 PF08534 Redoxin CJO90_RS03500 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CJO90_RS03500 PF00289 Biotin carboxylase, N-terminal domain CJO90_RS03500 PF02785 Biotin carboxylase C-terminal domain CJO90_RS03505 PF00364 Biotin-requiring enzyme CJO90_RS03510 PF01220 Dehydroquinase class II CJO90_RS03515 PF00085 Thioredoxin CJO90_RS03525 PF08245 Mur ligase middle domain CJO90_RS03525 PF02875 Mur ligase family, glutamate ligase domain CJO90_RS03525 PF01225 Mur ligase family, catalytic domain CJO90_RS03530 PF05728 Uncharacterised protein family (UPF0227) CJO90_RS03535 PF04345 Chorismate lyase CJO90_RS03540 PF00773 RNB domain CJO90_RS03550 PF08501 Shikimate dehydrogenase substrate binding domain CJO90_RS03550 PF01488 Shikimate / quinate 5-dehydrogenase CJO90_RS03550 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CJO90_RS03555 PF00912 Transglycosylase CJO90_RS03565 PF01544 CorA-like Mg2+ transporter protein CJO90_RS03570 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CJO90_RS03580 PF00994 Probable molybdopterin binding domain CJO90_RS03580 PF18146 Damage-inducible protein CinA KH domain CJO90_RS03580 PF02464 Competence-damaged protein CJO90_RS03585 PF04608 Phosphatidylglycerophosphatase A CJO90_RS03590 PF02769 AIR synthase related protein, C-terminal domain CJO90_RS03590 PF00586 AIR synthase related protein, N-terminal domain CJO90_RS03595 PF01515 Phosphate acetyl/butaryl transferase CJO90_RS03595 PF00390 Malic enzyme, N-terminal domain CJO90_RS03595 PF03949 Malic enzyme, NAD binding domain CJO90_RS03615 PF04452 RNA methyltransferase CJO90_RS03625 PF03466 LysR substrate binding domain CJO90_RS03625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS03630 PF13609 Gram-negative porin CJO90_RS03640 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CJO90_RS03645 PF00005 ABC transporter CJO90_RS03650 PF02653 Branched-chain amino acid transport system / permease component CJO90_RS03655 PF08450 SMP-30/Gluconolactonase/LRE-like region CJO90_RS03670 PF01081 KDPG and KHG aldolase CJO90_RS03675 PF13378 Enolase C-terminal domain-like CJO90_RS03675 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CJO90_RS03680 PF00456 Transketolase, thiamine diphosphate binding domain CJO90_RS03680 PF02780 Transketolase, C-terminal domain CJO90_RS03680 PF02779 Transketolase, pyrimidine binding domain CJO90_RS03685 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CJO90_RS03685 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CJO90_RS03690 PF03466 LysR substrate binding domain CJO90_RS03690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS03695 PF01475 Ferric uptake regulator family CJO90_RS03700 PF04355 SmpA / OmlA family CJO90_RS03705 PF01113 Dihydrodipicolinate reductase, N-terminus CJO90_RS03705 PF05173 Dihydrodipicolinate reductase, C-terminus CJO90_RS03710 PF09334 tRNA synthetases class I (M) CJO90_RS03710 PF00133 tRNA synthetases class I (I, L, M and V) CJO90_RS03710 PF08264 Anticodon-binding domain of tRNA CJO90_RS03710 PF13603 Leucyl-tRNA synthetase, Domain 2 CJO90_RS03720 PF06144 DNA polymerase III, delta subunit CJO90_RS03720 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CJO90_RS03725 PF00171 Aldehyde dehydrogenase family CJO90_RS03730 PF03653 Uncharacterised protein family (UPF0093) CJO90_RS03735 PF01170 Putative RNA methylase family UPF0020 CJO90_RS03735 PF02926 THUMP domain CJO90_RS03740 PF00158 Sigma-54 interaction domain CJO90_RS03740 PF00072 Response regulator receiver domain CJO90_RS03740 PF02954 Bacterial regulatory protein, Fis family CJO90_RS03745 PF00512 His Kinase A (phospho-acceptor) domain CJO90_RS03745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS03745 PF00989 PAS fold CJO90_RS03750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS03750 PF00512 His Kinase A (phospho-acceptor) domain CJO90_RS03760 PF00072 Response regulator receiver domain CJO90_RS03765 PF02233 NAD(P) transhydrogenase beta subunit CJO90_RS03770 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CJO90_RS03775 PF02261 Aspartate decarboxylase CJO90_RS03780 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CJO90_RS03780 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CJO90_RS03785 PF00593 TonB dependent receptor CJO90_RS03785 PF07715 TonB-dependent Receptor Plug Domain CJO90_RS03795 PF07690 Major Facilitator Superfamily CJO90_RS03800 PF13533 Biotin-lipoyl like CJO90_RS03820 PF01645 Conserved region in glutamate synthase CJO90_RS03825 PF00043 Glutathione S-transferase, C-terminal domain CJO90_RS03825 PF13417 Glutathione S-transferase, N-terminal domain CJO90_RS03830 PF08328 Adenylosuccinate lyase C-terminal CJO90_RS03830 PF00206 Lyase CJO90_RS03835 PF01292 Prokaryotic cytochrome b561 CJO90_RS03840 PF04264 YceI-like domain CJO90_RS03845 PF04264 YceI-like domain CJO90_RS03850 PF02355 Protein export membrane protein CJO90_RS03850 PF07549 SecD/SecF GG Motif CJO90_RS03855 PF13721 SecD export protein N-terminal TM region CJO90_RS03855 PF07549 SecD/SecF GG Motif CJO90_RS03855 PF02355 Protein export membrane protein CJO90_RS03860 PF02699 Preprotein translocase subunit CJO90_RS03865 PF01702 Queuine tRNA-ribosyltransferase CJO90_RS03870 PF02547 Queuosine biosynthesis protein CJO90_RS03875 PF00271 Helicase conserved C-terminal domain CJO90_RS03875 PF00270 DEAD/DEAH box helicase CJO90_RS03875 PF17191 RecG wedge domain CJO90_RS03895 PF14031 Putative serine dehydratase domain CJO90_RS03895 PF01168 Alanine racemase, N-terminal domain CJO90_RS03900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS03900 PF03466 LysR substrate binding domain CJO90_RS03905 PF00291 Pyridoxal-phosphate dependent enzyme CJO90_RS03915 PF01037 Lrp/AsnC ligand binding domain CJO90_RS03920 PF07687 Peptidase dimerisation domain CJO90_RS03920 PF01546 Peptidase family M20/M25/M40 CJO90_RS03925 PF04101 Glycosyltransferase family 28 C-terminal domain CJO90_RS03940 PF13737 Transposase DDE domain CJO90_RS03950 PF01609 Transposase DDE domain CJO90_RS03950 PF05598 Transposase domain (DUF772) CJO90_RS03980 PF00313 'Cold-shock' DNA-binding domain CJO90_RS04055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS04055 PF03466 LysR substrate binding domain CJO90_RS04070 PF00210 Ferritin-like domain CJO90_RS04075 PF01040 UbiA prenyltransferase family CJO90_RS04085 PF03807 NADP oxidoreductase coenzyme F420-dependent CJO90_RS04085 PF14748 Pyrroline-5-carboxylate reductase dimerisation CJO90_RS04090 PF01168 Alanine racemase, N-terminal domain CJO90_RS04095 PF00437 Type II/IV secretion system protein CJO90_RS04100 PF00437 Type II/IV secretion system protein CJO90_RS04135 PF00255 Glutathione peroxidase CJO90_RS04145 PF07883 Cupin domain CJO90_RS04155 PF04172 LrgB-like family CJO90_RS04160 PF03788 LrgA family CJO90_RS04165 PF13183 4Fe-4S dicluster domain CJO90_RS04165 PF02754 Cysteine-rich domain CJO90_RS04170 PF01565 FAD binding domain CJO90_RS04175 PF02913 FAD linked oxidases, C-terminal domain CJO90_RS04175 PF01565 FAD binding domain CJO90_RS04180 PF03466 LysR substrate binding domain CJO90_RS04180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS04185 PF01565 FAD binding domain CJO90_RS04185 PF02913 FAD linked oxidases, C-terminal domain CJO90_RS04190 PF01923 Cobalamin adenosyltransferase CJO90_RS04195 PF00924 Mechanosensitive ion channel CJO90_RS04195 PF05552 Conserved TM helix CJO90_RS04205 PF00793 DAHP synthetase I family CJO90_RS04210 PF01523 Putative modulator of DNA gyrase CJO90_RS04215 PF00795 Carbon-nitrogen hydrolase CJO90_RS04225 PF03710 Glutamate-ammonia ligase adenylyltransferase CJO90_RS04225 PF08335 GlnD PII-uridylyltransferase CJO90_RS04235 PF01483 Proprotein convertase P-domain CJO90_RS04235 PF00082 Subtilase family CJO90_RS04240 PF04151 Bacterial pre-peptidase C-terminal domain CJO90_RS04240 PF00082 Subtilase family CJO90_RS04250 PF02463 RecF/RecN/SMC N terminal domain CJO90_RS04255 PF01513 ATP-NAD kinase CJO90_RS04260 PF01628 HrcA protein C terminal domain CJO90_RS04265 PF07702 UTRA domain CJO90_RS04265 PF00392 Bacterial regulatory proteins, gntR family CJO90_RS04270 PF01175 Urocanase Rossmann-like domain CJO90_RS04270 PF17392 Urocanase C-terminal domain CJO90_RS04270 PF17391 Urocanase N-terminal domain CJO90_RS04275 PF00221 Aromatic amino acid lyase CJO90_RS04280 PF00491 Arginase family CJO90_RS04285 PF01979 Amidohydrolase family CJO90_RS04290 PF00762 Ferrochelatase CJO90_RS04295 PF01479 S4 domain CJO90_RS04310 PF01025 GrpE CJO90_RS04320 PF14760 Rnk N-terminus CJO90_RS04320 PF01272 Transcription elongation factor, GreA/GreB, C-term CJO90_RS04325 PF00012 Hsp70 protein CJO90_RS04330 PF01556 DnaJ C terminal domain CJO90_RS04330 PF00226 DnaJ domain CJO90_RS04330 PF00684 DnaJ central domain CJO90_RS04335 PF04715 Anthranilate synthase component I, N terminal region CJO90_RS04335 PF00425 chorismate binding enzyme CJO90_RS04335 PF00117 Glutamine amidotransferase class-I CJO90_RS04340 PF00005 ABC transporter CJO90_RS04345 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS04350 PF02548 Ketopantoate hydroxymethyltransferase CJO90_RS04360 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CJO90_RS04365 PF01743 Poly A polymerase head domain CJO90_RS04365 PF12627 Probable RNA and SrmB- binding site of polymerase A CJO90_RS04365 PF12626 Polymerase A arginine-rich C-terminus CJO90_RS04375 PF00308 Bacterial dnaA protein CJO90_RS04380 PF01594 AI-2E family transporter CJO90_RS04385 PF02769 AIR synthase related protein, C-terminal domain CJO90_RS04385 PF00586 AIR synthase related protein, N-terminal domain CJO90_RS04400 PF02805 Metal binding domain of Ada CJO90_RS04400 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CJO90_RS04400 PF12833 Helix-turn-helix domain CJO90_RS04400 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CJO90_RS04410 PF13532 2OG-Fe(II) oxygenase superfamily CJO90_RS04415 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA CJO90_RS04420 PF02805 Metal binding domain of Ada CJO90_RS04420 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CJO90_RS04420 PF12833 Helix-turn-helix domain CJO90_RS04420 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CJO90_RS04425 PF00583 Acetyltransferase (GNAT) family CJO90_RS04435 PF08676 MutL C terminal dimerisation domain CJO90_RS04435 PF01119 DNA mismatch repair protein, C-terminal domain CJO90_RS04440 PF02470 MlaD protein CJO90_RS04455 PF09335 SNARE associated Golgi protein CJO90_RS04460 PF13369 Transglutaminase-like superfamily CJO90_RS04465 PF03023 Lipid II flippase MurJ CJO90_RS04470 PF01649 Ribosomal protein S20 CJO90_RS04480 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CJO90_RS04480 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CJO90_RS04490 PF00764 Arginosuccinate synthase CJO90_RS04495 PF06865 Pyrimidine/purine nucleoside phosphorylase CJO90_RS04505 PF01565 FAD binding domain CJO90_RS04505 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CJO90_RS04510 PF04461 Protein of unknown function (DUF520) CJO90_RS04515 PF01156 Inosine-uridine preferring nucleoside hydrolase CJO90_RS04525 PF02660 Glycerol-3-phosphate acyltransferase CJO90_RS04530 PF04073 Aminoacyl-tRNA editing domain CJO90_RS04535 PF02899 Phage integrase, N-terminal SAM-like domain CJO90_RS04535 PF00589 Phage integrase family CJO90_RS04540 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CJO90_RS04540 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CJO90_RS04550 PF08331 Domain of unknown function (DUF1730) CJO90_RS04555 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CJO90_RS04560 PF01520 N-acetylmuramoyl-L-alanine amidase CJO90_RS04560 PF11741 AMIN domain CJO90_RS04565 PF13593 SBF-like CPA transporter family (DUF4137) CJO90_RS04570 PF03466 LysR substrate binding domain CJO90_RS04570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS04575 PF00171 Aldehyde dehydrogenase family CJO90_RS04580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS04580 PF03466 LysR substrate binding domain CJO90_RS04585 PF00106 short chain dehydrogenase CJO90_RS04590 PF05191 Adenylate kinase, active site lid CJO90_RS04595 PF02348 Cytidylyltransferase CJO90_RS04600 PF03966 Trm112p-like protein CJO90_RS04605 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CJO90_RS04615 PF01618 MotA/TolQ/ExbB proton channel family CJO90_RS04620 PF13742 OB-fold nucleic acid binding domain CJO90_RS04620 PF02601 Exonuclease VII, large subunit CJO90_RS04625 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CJO90_RS04625 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CJO90_RS04640 PF00571 CBS domain CJO90_RS04640 PF02163 Peptidase family M50 CJO90_RS04650 PF05962 HutD CJO90_RS04655 PF00216 Bacterial DNA-binding protein CJO90_RS04700 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS04705 PF01966 HD domain CJO90_RS04705 PF11871 Domain of unknown function (DUF3391) CJO90_RS04720 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJO90_RS04725 PF01546 Peptidase family M20/M25/M40 CJO90_RS04725 PF07687 Peptidase dimerisation domain CJO90_RS04750 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CJO90_RS04750 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CJO90_RS04755 PF12833 Helix-turn-helix domain CJO90_RS04755 PF00730 HhH-GPD superfamily base excision DNA repair protein CJO90_RS04755 PF06029 AlkA N-terminal domain CJO90_RS04755 PF02805 Metal binding domain of Ada CJO90_RS04765 PF04228 Putative neutral zinc metallopeptidase CJO90_RS04780 PF07681 DoxX CJO90_RS04785 PF07690 Major Facilitator Superfamily CJO90_RS04790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS04790 PF03466 LysR substrate binding domain CJO90_RS04795 PF03466 LysR substrate binding domain CJO90_RS04795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS04800 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme CJO90_RS04805 PF12706 Beta-lactamase superfamily domain CJO90_RS04815 PF03150 Di-haem cytochrome c peroxidase CJO90_RS04830 PF00180 Isocitrate/isopropylmalate dehydrogenase CJO90_RS04835 PF13356 Arm DNA-binding domain CJO90_RS04835 PF00589 Phage integrase family CJO90_RS04915 PF00313 'Cold-shock' DNA-binding domain CJO90_RS04920 PF02617 ATP-dependent Clp protease adaptor protein ClpS CJO90_RS04925 PF02861 Clp amino terminal domain, pathogenicity island component CJO90_RS04925 PF17871 AAA lid domain CJO90_RS04925 PF07724 AAA domain (Cdc48 subfamily) CJO90_RS04925 PF00004 ATPase family associated with various cellular activities (AAA) CJO90_RS04925 PF10431 C-terminal, D2-small domain, of ClpB protein CJO90_RS04930 PF00692 dUTPase CJO90_RS04935 PF00296 Luciferase-like monooxygenase CJO90_RS04940 PF02441 Flavoprotein CJO90_RS04940 PF04127 DNA / pantothenate metabolism flavoprotein CJO90_RS04950 PF01252 Signal peptidase (SPase) II CJO90_RS04955 PF00133 tRNA synthetases class I (I, L, M and V) CJO90_RS04955 PF06827 Zinc finger found in FPG and IleRS CJO90_RS04955 PF08264 Anticodon-binding domain of tRNA CJO90_RS04960 PF01687 Riboflavin kinase CJO90_RS04960 PF06574 FAD synthetase CJO90_RS04965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS04965 PF00512 His Kinase A (phospho-acceptor) domain CJO90_RS04965 PF09308 LuxQ, periplasmic CJO90_RS04965 PF00072 Response regulator receiver domain CJO90_RS04970 PF00072 Response regulator receiver domain CJO90_RS04970 PF00196 Bacterial regulatory proteins, luxR family CJO90_RS04975 PF00551 Formyl transferase CJO90_RS04980 PF01189 16S rRNA methyltransferase RsmB/F CJO90_RS04980 PF01029 NusB family CJO90_RS04985 PF13091 PLD-like domain CJO90_RS04990 PF12795 Mechanosensitive ion channel porin domain CJO90_RS04990 PF12794 Mechanosensitive ion channel inner membrane domain 1 CJO90_RS04990 PF00924 Mechanosensitive ion channel CJO90_RS05000 PF02445 Quinolinate synthetase A protein CJO90_RS05005 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CJO90_RS05005 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CJO90_RS05010 PF02910 Fumarate reductase flavoprotein C-term CJO90_RS05010 PF00890 FAD binding domain CJO90_RS05015 PF00471 Ribosomal protein L33 CJO90_RS05020 PF00830 Ribosomal L28 family CJO90_RS05025 PF04002 RadC-like JAB domain CJO90_RS05030 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CJO90_RS05035 PF02401 LytB protein CJO90_RS05040 PF13458 Periplasmic binding protein CJO90_RS05045 PF02653 Branched-chain amino acid transport system / permease component CJO90_RS05050 PF11862 Domain of unknown function (DUF3382) CJO90_RS05050 PF02653 Branched-chain amino acid transport system / permease component CJO90_RS05055 PF00005 ABC transporter CJO90_RS05055 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJO90_RS05060 PF00005 ABC transporter CJO90_RS05070 PF00202 Aminotransferase class-III CJO90_RS05075 PF00970 Oxidoreductase FAD-binding domain CJO90_RS05075 PF00111 2Fe-2S iron-sulfur cluster binding domain CJO90_RS05075 PF00175 Oxidoreductase NAD-binding domain CJO90_RS05085 PF00990 Diguanylate cyclase, GGDEF domain CJO90_RS05105 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CJO90_RS05105 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CJO90_RS05115 PF03466 LysR substrate binding domain CJO90_RS05115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS05125 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CJO90_RS05125 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CJO90_RS05135 PF01507 Phosphoadenosine phosphosulfate reductase family CJO90_RS05140 PF01507 Phosphoadenosine phosphosulfate reductase family CJO90_RS05145 PF00009 Elongation factor Tu GTP binding domain CJO90_RS05150 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJO90_RS05175 PF00883 Cytosol aminopeptidase family, catalytic domain CJO90_RS05175 PF02789 Cytosol aminopeptidase family, N-terminal domain CJO90_RS05180 PF04364 DNA polymerase III chi subunit, HolC CJO90_RS05190 PF01609 Transposase DDE domain CJO90_RS05190 PF13006 Insertion element 4 transposase N-terminal CJO90_RS05195 PF00920 Dehydratase family CJO90_RS05200 PF03466 LysR substrate binding domain CJO90_RS05200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS05205 PF01790 Prolipoprotein diacylglyceryl transferase CJO90_RS05235 PF00593 TonB dependent receptor CJO90_RS05235 PF07715 TonB-dependent Receptor Plug Domain CJO90_RS05240 PF01032 FecCD transport family CJO90_RS05245 PF00005 ABC transporter CJO90_RS05250 PF02277 Phosphoribosyltransferase CJO90_RS05255 PF02654 Cobalamin-5-phosphate synthase CJO90_RS05265 PF01497 Periplasmic binding protein CJO90_RS05270 PF00155 Aminotransferase class I and II CJO90_RS05275 PF03186 CobD/Cbib protein CJO90_RS05275 PF17113 Regulatory signalling modulator protein AmpE CJO90_RS05280 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CJO90_RS05285 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CJO90_RS05285 PF07685 CobB/CobQ-like glutamine amidotransferase domain CJO90_RS05300 PF02569 Pantoate-beta-alanine ligase CJO90_RS05305 PF02616 Segregation and condensation protein ScpA CJO90_RS05320 PF04357 TamB, inner membrane protein subunit of TAM complex CJO90_RS05330 PF09334 tRNA synthetases class I (M) CJO90_RS05330 PF01588 Putative tRNA binding domain CJO90_RS05335 PF05736 OprF membrane domain CJO90_RS05335 PF00691 OmpA family CJO90_RS05340 PF10609 NUBPL iron-transfer P-loop NTPase CJO90_RS05370 PF01568 Molydopterin dinucleotide binding domain CJO90_RS05370 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CJO90_RS05370 PF00384 Molybdopterin oxidoreductase CJO90_RS05375 PF13247 4Fe-4S dicluster domain CJO90_RS05395 PF00080 Copper/zinc superoxide dismutase (SODC) CJO90_RS05400 PF02634 FdhD/NarQ family CJO90_RS05405 PF00692 dUTPase CJO90_RS05410 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CJO90_RS05410 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CJO90_RS05410 PF01276 Orn/Lys/Arg decarboxylase, major domain CJO90_RS05450 PF14698 Argininosuccinate lyase C-terminal CJO90_RS05450 PF00206 Lyase CJO90_RS05480 PF03900 Porphobilinogen deaminase, C-terminal domain CJO90_RS05480 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CJO90_RS05485 PF02602 Uroporphyrinogen-III synthase HemD CJO90_RS05505 PF07690 Major Facilitator Superfamily CJO90_RS05515 PF00171 Aldehyde dehydrogenase family CJO90_RS05520 PF00719 Inorganic pyrophosphatase CJO90_RS05535 PF00795 Carbon-nitrogen hydrolase CJO90_RS05535 PF02540 NAD synthase CJO90_RS05540 PF01209 ubiE/COQ5 methyltransferase family CJO90_RS05545 PF00543 Nitrogen regulatory protein P-II CJO90_RS05550 PF03458 UPF0126 domain CJO90_RS05560 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO90_RS05565 PF09397 Ftsk gamma domain CJO90_RS05565 PF01580 FtsK/SpoIIIE family CJO90_RS05565 PF17854 FtsK alpha domain CJO90_RS05565 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CJO90_RS05570 PF03548 Outer membrane lipoprotein carrier protein LolA CJO90_RS05585 PF02403 Seryl-tRNA synthetase N-terminal domain CJO90_RS05585 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CJO90_RS05595 PF00589 Phage integrase family CJO90_RS05595 PF13356 Arm DNA-binding domain CJO90_RS05710 PF03852 DNA mismatch endonuclease Vsr CJO90_RS05715 PF00145 C-5 cytosine-specific DNA methylase CJO90_RS05725 PF04851 Type III restriction enzyme, res subunit CJO90_RS05725 PF00271 Helicase conserved C-terminal domain CJO90_RS05725 PF17757 UvrB interaction domain CJO90_RS05725 PF12344 Ultra-violet resistance protein B CJO90_RS05725 PF02151 UvrB/uvrC motif CJO90_RS05760 PF09588 YqaJ-like viral recombinase domain CJO90_RS05810 PF06715 Gp5 C-terminal repeat (3 copies) CJO90_RS05810 PF04717 Type VI secretion system, phage-baseplate injector CJO90_RS05855 PF01047 MarR family CJO90_RS05860 PF07690 Major Facilitator Superfamily CJO90_RS05865 PF07690 Major Facilitator Superfamily CJO90_RS05870 PF13411 MerR HTH family regulatory protein CJO90_RS05875 PF00106 short chain dehydrogenase CJO90_RS05880 PF01037 Lrp/AsnC ligand binding domain CJO90_RS05880 PF13404 AsnC-type helix-turn-helix domain CJO90_RS05890 PF01037 Lrp/AsnC ligand binding domain CJO90_RS05900 PF07690 Major Facilitator Superfamily CJO90_RS05915 PF00072 Response regulator receiver domain CJO90_RS05915 PF00196 Bacterial regulatory proteins, luxR family CJO90_RS05920 PF07730 Histidine kinase CJO90_RS05920 PF17200 Single Cache domain 2 CJO90_RS05925 PF07963 Prokaryotic N-terminal methylation motif CJO90_RS05925 PF08334 Type II secretion system (T2SS), protein G CJO90_RS05930 PF00482 Type II secretion system (T2SS), protein F CJO90_RS05935 PF00437 Type II/IV secretion system protein CJO90_RS05960 PF03958 Bacterial type II/III secretion system short domain CJO90_RS05960 PF00263 Bacterial type II and III secretion system protein CJO90_RS05970 PF07963 Prokaryotic N-terminal methylation motif CJO90_RS05970 PF08334 Type II secretion system (T2SS), protein G CJO90_RS05985 PF07732 Multicopper oxidase CJO90_RS05985 PF00394 Multicopper oxidase CJO90_RS06020 PF01464 Transglycosylase SLT domain CJO90_RS06040 PF00578 AhpC/TSA family CJO90_RS06050 PF06903 VirK protein CJO90_RS06080 PF02627 Carboxymuconolactone decarboxylase family CJO90_RS06085 PF01595 Cyclin M transmembrane N-terminal domain CJO90_RS06085 PF00571 CBS domain CJO90_RS06085 PF03471 Transporter associated domain CJO90_RS06140 PF01266 FAD dependent oxidoreductase CJO90_RS06145 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJO90_RS06150 PF00005 ABC transporter CJO90_RS06155 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS06160 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS06165 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJO90_RS06175 PF09339 IclR helix-turn-helix domain CJO90_RS06175 PF01614 Bacterial transcriptional regulator CJO90_RS06180 PF01144 Coenzyme A transferase CJO90_RS06185 PF01144 Coenzyme A transferase CJO90_RS06190 PF02803 Thiolase, C-terminal domain CJO90_RS06190 PF00108 Thiolase, N-terminal domain CJO90_RS06195 PF10397 Adenylosuccinate lyase C-terminus CJO90_RS06195 PF00206 Lyase CJO90_RS06200 PF12146 Serine aminopeptidase, S33 CJO90_RS06205 PF02627 Carboxymuconolactone decarboxylase family CJO90_RS06220 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJO90_RS06220 PF00005 ABC transporter CJO90_RS06225 PF00005 ABC transporter CJO90_RS06230 PF13458 Periplasmic binding protein CJO90_RS06235 PF03466 LysR substrate binding domain CJO90_RS06235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS06240 PF01494 FAD binding domain CJO90_RS06245 PF03537 Glycoside-hydrolase family GH114 CJO90_RS06255 PF01176 Translation initiation factor 1A / IF-1 CJO90_RS06265 PF00483 Nucleotidyl transferase CJO90_RS06270 PF00133 tRNA synthetases class I (I, L, M and V) CJO90_RS06270 PF08264 Anticodon-binding domain of tRNA CJO90_RS06270 PF10458 Valyl tRNA synthetase tRNA binding arm CJO90_RS06275 PF13361 UvrD-like helicase C-terminal domain CJO90_RS06275 PF00580 UvrD/REP helicase N-terminal domain CJO90_RS06285 PF01636 Phosphotransferase enzyme family CJO90_RS06295 PF03641 Possible lysine decarboxylase CJO90_RS06300 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CJO90_RS06300 PF00476 DNA polymerase family A CJO90_RS06300 PF01367 5'-3' exonuclease, C-terminal SAM fold CJO90_RS06300 PF01612 3'-5' exonuclease CJO90_RS06305 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO90_RS06310 PF01738 Dienelactone hydrolase family CJO90_RS06320 PF01609 Transposase DDE domain CJO90_RS06320 PF13006 Insertion element 4 transposase N-terminal CJO90_RS06325 PF00581 Rhodanese-like domain CJO90_RS06340 PF02609 Exonuclease VII small subunit CJO90_RS06345 PF00348 Polyprenyl synthetase CJO90_RS06355 PF02649 Type I GTP cyclohydrolase folE2 CJO90_RS06360 PF00814 Glycoprotease family CJO90_RS06370 PF09424 Yqey-like protein CJO90_RS06375 PF08275 DNA primase catalytic core, N-terminal domain CJO90_RS06375 PF10410 DnaB-helicase binding domain of primase CJO90_RS06375 PF01807 CHC2 zinc finger CJO90_RS06375 PF08278 DNA primase DnaG DnaB-binding CJO90_RS06380 PF04546 Sigma-70, non-essential region CJO90_RS06380 PF04545 Sigma-70, region 4 CJO90_RS06380 PF03979 Sigma-70 factor, region 1.1 CJO90_RS06380 PF00140 Sigma-70 factor, region 1.2 CJO90_RS06380 PF04539 Sigma-70 region 3 CJO90_RS06380 PF04542 Sigma-70 region 2 CJO90_RS06390 PF00753 Metallo-beta-lactamase superfamily CJO90_RS06400 PF01613 Flavin reductase like domain CJO90_RS06400 PF00258 Flavodoxin CJO90_RS06405 PF00271 Helicase conserved C-terminal domain CJO90_RS06405 PF00270 DEAD/DEAH box helicase CJO90_RS06410 PF00749 tRNA synthetases class I (E and Q), catalytic domain CJO90_RS06415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS06415 PF03466 LysR substrate binding domain CJO90_RS06425 PF03358 NADPH-dependent FMN reductase CJO90_RS06430 PF17773 UPF0176 acylphosphatase like domain CJO90_RS06435 PF07733 Bacterial DNA polymerase III alpha NTPase domain CJO90_RS06435 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CJO90_RS06435 PF14579 Helix-hairpin-helix motif CJO90_RS06435 PF02811 PHP domain CJO90_RS06435 PF01336 OB-fold nucleic acid binding domain CJO90_RS06450 PF00535 Glycosyl transferase family 2 CJO90_RS06460 PF00005 ABC transporter CJO90_RS06460 PF00664 ABC transporter transmembrane region CJO90_RS06480 PF00575 S1 RNA binding domain CJO90_RS06480 PF10150 Ribonuclease E/G family CJO90_RS06485 PF02545 Maf-like protein CJO90_RS06490 PF02590 Predicted SPOUT methyltransferase CJO90_RS06500 PF01467 Cytidylyltransferase-like CJO90_RS06505 PF01218 Coproporphyrinogen III oxidase CJO90_RS06510 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CJO90_RS06510 PF02843 Phosphoribosylglycinamide synthetase, C domain CJO90_RS06510 PF02844 Phosphoribosylglycinamide synthetase, N domain CJO90_RS06515 PF01709 Transcriptional regulator CJO90_RS06520 PF05872 Bacterial protein of unknown function (DUF853) CJO90_RS06530 PF00892 EamA-like transporter family CJO90_RS06540 PF02142 MGS-like domain CJO90_RS06545 PF08240 Alcohol dehydrogenase GroES-like domain CJO90_RS06545 PF00107 Zinc-binding dehydrogenase CJO90_RS06580 PF02608 ABC transporter substrate-binding protein PnrA-like CJO90_RS06590 PF02653 Branched-chain amino acid transport system / permease component CJO90_RS06595 PF00005 ABC transporter CJO90_RS06600 PF07690 Major Facilitator Superfamily CJO90_RS06605 PF02682 Carboxyltransferase domain, subdomain C and D CJO90_RS06610 PF02626 Carboxyltransferase domain, subdomain A and B CJO90_RS06615 PF03746 LamB/YcsF family CJO90_RS06630 PF03480 Bacterial extracellular solute-binding protein, family 7 CJO90_RS06635 PF01470 Pyroglutamyl peptidase CJO90_RS06650 PF12706 Beta-lactamase superfamily domain CJO90_RS06660 PF04055 Radical SAM superfamily CJO90_RS06660 PF06969 HemN C-terminal domain CJO90_RS06665 PF01725 Ham1 family CJO90_RS06670 PF03725 3' exoribonuclease family, domain 2 CJO90_RS06670 PF01138 3' exoribonuclease family, domain 1 CJO90_RS06685 PF08340 Domain of unknown function (DUF1732) CJO90_RS06685 PF03755 YicC-like family, N-terminal region CJO90_RS06690 PF00625 Guanylate kinase CJO90_RS06695 PF01192 RNA polymerase Rpb6 CJO90_RS06700 PF02824 TGS domain CJO90_RS06700 PF04607 Region found in RelA / SpoT proteins CJO90_RS06700 PF13291 ACT domain CJO90_RS06710 PF01272 Transcription elongation factor, GreA/GreB, C-term CJO90_RS06710 PF03449 Transcription elongation factor, N-terminal CJO90_RS06730 PF04972 BON domain CJO90_RS06730 PF01476 LysM domain CJO90_RS06740 PF00294 pfkB family carbohydrate kinase CJO90_RS06745 PF08013 Tagatose 6 phosphate kinase CJO90_RS06755 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS06760 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS06765 PF13419 Haloacid dehalogenase-like hydrolase CJO90_RS06770 PF00005 ABC transporter CJO90_RS06770 PF17912 MalK OB fold domain CJO90_RS06780 PF01638 HxlR-like helix-turn-helix CJO90_RS06790 PF13609 Gram-negative porin CJO90_RS06815 PF08125 Mannitol dehydrogenase C-terminal domain CJO90_RS06815 PF01232 Mannitol dehydrogenase Rossmann domain CJO90_RS06820 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CJO90_RS06820 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CJO90_RS06825 PF00325 Bacterial regulatory proteins, crp family CJO90_RS06825 PF04198 Putative sugar-binding domain CJO90_RS06835 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CJO90_RS06840 PF01433 Peptidase family M1 domain CJO90_RS06840 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CJO90_RS06840 PF11940 Domain of unknown function (DUF3458) Ig-like fold CJO90_RS06850 PF03949 Malic enzyme, NAD binding domain CJO90_RS06850 PF01515 Phosphate acetyl/butaryl transferase CJO90_RS06850 PF00390 Malic enzyme, N-terminal domain CJO90_RS06860 PF01014 Uricase CJO90_RS06860 PF09349 OHCU decarboxylase CJO90_RS06870 PF01979 Amidohydrolase family CJO90_RS06875 PF00860 Permease family CJO90_RS06885 PF00576 HIUase/Transthyretin family CJO90_RS06900 PF05598 Transposase domain (DUF772) CJO90_RS06900 PF01609 Transposase DDE domain CJO90_RS06905 PF01266 FAD dependent oxidoreductase CJO90_RS06920 PF00701 Dihydrodipicolinate synthetase family CJO90_RS06925 PF00171 Aldehyde dehydrogenase family CJO90_RS06930 PF00892 EamA-like transporter family CJO90_RS06935 PF13609 Gram-negative porin CJO90_RS06945 PF00005 ABC transporter CJO90_RS06950 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS06955 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS06965 PF07729 FCD domain CJO90_RS06965 PF00392 Bacterial regulatory proteins, gntR family CJO90_RS06985 PF01169 Uncharacterized protein family UPF0016 CJO90_RS06990 PF01979 Amidohydrolase family CJO90_RS06995 PF00962 Adenosine/AMP deaminase CJO90_RS07005 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CJO90_RS07005 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CJO90_RS07010 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CJO90_RS07010 PF01799 [2Fe-2S] binding domain CJO90_RS07010 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CJO90_RS07010 PF00111 2Fe-2S iron-sulfur cluster binding domain CJO90_RS07015 PF03466 LysR substrate binding domain CJO90_RS07015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS07020 PF12849 PBP superfamily domain CJO90_RS07050 PF03641 Possible lysine decarboxylase CJO90_RS07055 PF08359 YsiA-like protein, C-terminal region CJO90_RS07055 PF00440 Bacterial regulatory proteins, tetR family CJO90_RS07060 PF01219 Prokaryotic diacylglycerol kinase CJO90_RS07065 PF00534 Glycosyl transferases group 1 CJO90_RS07065 PF13439 Glycosyltransferase Family 4 CJO90_RS07100 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CJO90_RS07100 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CJO90_RS07100 PF00205 Thiamine pyrophosphate enzyme, central domain CJO90_RS07105 PF10369 Small subunit of acetolactate synthase CJO90_RS07110 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CJO90_RS07110 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CJO90_RS07115 PF02666 Phosphatidylserine decarboxylase CJO90_RS07120 PF01066 CDP-alcohol phosphatidyltransferase CJO90_RS07125 PF00682 HMGL-like CJO90_RS07125 PF08502 LeuA allosteric (dimerisation) domain CJO90_RS07135 PF13458 Periplasmic binding protein CJO90_RS07140 PF00312 Ribosomal protein S15 CJO90_RS07145 PF00575 S1 RNA binding domain CJO90_RS07145 PF03725 3' exoribonuclease family, domain 2 CJO90_RS07145 PF01138 3' exoribonuclease family, domain 1 CJO90_RS07145 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CJO90_RS07145 PF00013 KH domain CJO90_RS07160 PF00121 Triosephosphate isomerase CJO90_RS07165 PF03840 Preprotein translocase SecG subunit CJO90_RS07175 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CJO90_RS07180 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CJO90_RS07185 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CJO90_RS07190 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CJO90_RS07200 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CJO90_RS07200 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CJO90_RS07200 PF10531 SLBB domain CJO90_RS07205 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal CJO90_RS07205 PF00384 Molybdopterin oxidoreductase CJO90_RS07205 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CJO90_RS07210 PF00146 NADH dehydrogenase CJO90_RS07215 PF12838 4Fe-4S dicluster domain CJO90_RS07220 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CJO90_RS07225 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CJO90_RS07230 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CJO90_RS07230 PF00361 Proton-conducting membrane transporter CJO90_RS07235 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus CJO90_RS07235 PF00361 Proton-conducting membrane transporter CJO90_RS07240 PF00361 Proton-conducting membrane transporter CJO90_RS07260 PF02770 Acyl-CoA dehydrogenase, middle domain CJO90_RS07260 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJO90_RS07260 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJO90_RS07265 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJO90_RS07265 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJO90_RS07265 PF02770 Acyl-CoA dehydrogenase, middle domain CJO90_RS07270 PF00171 Aldehyde dehydrogenase family CJO90_RS07270 PF01575 MaoC like domain CJO90_RS07275 PF01575 MaoC like domain CJO90_RS07285 PF02653 Branched-chain amino acid transport system / permease component CJO90_RS07290 PF02653 Branched-chain amino acid transport system / permease component CJO90_RS07295 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJO90_RS07295 PF00005 ABC transporter CJO90_RS07300 PF00005 ABC transporter CJO90_RS07305 PF01774 UreD urease accessory protein CJO90_RS07310 PF00547 Urease, gamma subunit CJO90_RS07315 PF04955 HupE / UreJ protein CJO90_RS07320 PF00699 Urease beta subunit CJO90_RS07325 PF01979 Amidohydrolase family CJO90_RS07325 PF00449 Urease alpha-subunit, N-terminal domain CJO90_RS07330 PF05194 UreE urease accessory protein, C-terminal domain CJO90_RS07330 PF02814 UreE urease accessory protein, N-terminal domain CJO90_RS07335 PF01730 UreF CJO90_RS07340 PF02492 CobW/HypB/UreG, nucleotide-binding domain CJO90_RS07350 PF01810 LysE type translocator CJO90_RS07365 PF02798 Glutathione S-transferase, N-terminal domain CJO90_RS07365 PF00043 Glutathione S-transferase, C-terminal domain CJO90_RS07370 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJO90_RS07370 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJO90_RS07370 PF02770 Acyl-CoA dehydrogenase, middle domain CJO90_RS07380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS07380 PF03466 LysR substrate binding domain CJO90_RS07400 PF00378 Enoyl-CoA hydratase/isomerase CJO90_RS07405 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CJO90_RS07405 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain CJO90_RS07405 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CJO90_RS07410 PF14497 Glutathione S-transferase, C-terminal domain CJO90_RS07410 PF13417 Glutathione S-transferase, N-terminal domain CJO90_RS07415 PF00155 Aminotransferase class I and II CJO90_RS07425 PF03883 Peroxide stress protein YaaA CJO90_RS07430 PF18027 Cytosolic carboxypeptidase N-terminal domain CJO90_RS07430 PF00246 Zinc carboxypeptidase CJO90_RS07440 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJO90_RS07455 PF00330 Aconitase family (aconitate hydratase) CJO90_RS07455 PF00694 Aconitase C-terminal domain CJO90_RS07460 PF03972 MmgE/PrpD family CJO90_RS07485 PF00155 Aminotransferase class I and II CJO90_RS07485 PF00392 Bacterial regulatory proteins, gntR family CJO90_RS07495 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CJO90_RS07500 PF00890 FAD binding domain CJO90_RS07500 PF02910 Fumarate reductase flavoprotein C-term CJO90_RS07505 PF13085 2Fe-2S iron-sulfur cluster binding domain CJO90_RS07510 PF03937 Flavinator of succinate dehydrogenase CJO90_RS07515 PF00285 Citrate synthase, C-terminal domain CJO90_RS07520 PF00330 Aconitase family (aconitate hydratase) CJO90_RS07525 PF00694 Aconitase C-terminal domain CJO90_RS07530 PF00180 Isocitrate/isopropylmalate dehydrogenase CJO90_RS07535 PF01118 Semialdehyde dehydrogenase, NAD binding domain CJO90_RS07535 PF02774 Semialdehyde dehydrogenase, dimerisation domain CJO90_RS07545 PF01416 tRNA pseudouridine synthase CJO90_RS07550 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CJO90_RS07555 PF00291 Pyridoxal-phosphate dependent enzyme CJO90_RS07560 PF01555 DNA methylase CJO90_RS07565 PF00290 Tryptophan synthase alpha chain CJO90_RS07570 PF01039 Carboxyl transferase domain CJO90_RS07570 PF17848 Acetyl-coA carboxylase zinc finger domain CJO90_RS07575 PF02875 Mur ligase family, glutamate ligase domain CJO90_RS07575 PF08245 Mur ligase middle domain CJO90_RS07590 PF00156 Phosphoribosyl transferase domain CJO90_RS07595 PF01061 ABC-2 type transporter CJO90_RS07600 PF00005 ABC transporter CJO90_RS07630 PF03928 Haem-degrading CJO90_RS07640 PF02472 Biopolymer transport protein ExbD/TolR CJO90_RS07645 PF01618 MotA/TolQ/ExbB proton channel family CJO90_RS07655 PF17862 AAA+ lid domain CJO90_RS07655 PF00004 ATPase family associated with various cellular activities (AAA) CJO90_RS07655 PF01434 Peptidase family M41 CJO90_RS07675 PF00375 Sodium:dicarboxylate symporter family CJO90_RS07680 PF01177 Asp/Glu/Hydantoin racemase CJO90_RS07690 PF03350 Uncharacterized protein family, UPF0114 CJO90_RS07695 PF00892 EamA-like transporter family CJO90_RS07700 PF16177 Acetyl-coenzyme A synthetase N-terminus CJO90_RS07700 PF13193 AMP-binding enzyme C-terminal domain CJO90_RS07700 PF00501 AMP-binding enzyme CJO90_RS07705 PF00474 Sodium:solute symporter family CJO90_RS07715 PF05598 Transposase domain (DUF772) CJO90_RS07715 PF01609 Transposase DDE domain CJO90_RS07725 PF00196 Bacterial regulatory proteins, luxR family CJO90_RS07725 PF03472 Autoinducer binding domain CJO90_RS07735 PF00990 Diguanylate cyclase, GGDEF domain CJO90_RS07735 PF00072 Response regulator receiver domain CJO90_RS07750 PF01799 [2Fe-2S] binding domain CJO90_RS07750 PF00111 2Fe-2S iron-sulfur cluster binding domain CJO90_RS07755 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CJO90_RS07770 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJO90_RS07775 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJO90_RS07775 PF00005 ABC transporter CJO90_RS07780 PF00005 ABC transporter CJO90_RS07780 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJO90_RS07785 PF12911 N-terminal TM domain of oligopeptide transport permease C CJO90_RS07785 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS07790 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS07795 PF13454 FAD-NAD(P)-binding CJO90_RS07800 PF03466 LysR substrate binding domain CJO90_RS07800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS07835 PF00551 Formyl transferase CJO90_RS07840 PF00929 Exonuclease CJO90_RS07850 PF00589 Phage integrase family CJO90_RS07850 PF13356 Arm DNA-binding domain CJO90_RS07880 PF00248 Aldo/keto reductase family CJO90_RS07885 PF00264 Common central domain of tyrosinase CJO90_RS07900 PF00582 Universal stress protein family CJO90_RS07905 PF08240 Alcohol dehydrogenase GroES-like domain CJO90_RS07935 PF00075 RNase H CJO90_RS07940 PF08241 Methyltransferase domain CJO90_RS07945 PF00753 Metallo-beta-lactamase superfamily CJO90_RS07945 PF16123 Hydroxyacylglutathione hydrolase C-terminus CJO90_RS07950 PF01476 LysM domain CJO90_RS07950 PF01464 Transglycosylase SLT domain CJO90_RS07955 PF00501 AMP-binding enzyme CJO90_RS07955 PF13193 AMP-binding enzyme C-terminal domain CJO90_RS07955 PF16177 Acetyl-coenzyme A synthetase N-terminus CJO90_RS07960 PF00117 Glutamine amidotransferase class-I CJO90_RS07960 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CJO90_RS07965 PF01810 LysE type translocator CJO90_RS07970 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CJO90_RS07970 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CJO90_RS07970 PF02142 MGS-like domain CJO90_RS07975 PF01272 Transcription elongation factor, GreA/GreB, C-term CJO90_RS07975 PF03449 Transcription elongation factor, N-terminal CJO90_RS07985 PF01985 CRS1 / YhbY (CRM) domain CJO90_RS07990 PF01728 FtsJ-like methyltransferase CJO90_RS07995 PF00004 ATPase family associated with various cellular activities (AAA) CJO90_RS07995 PF17862 AAA+ lid domain CJO90_RS07995 PF06480 FtsH Extracellular CJO90_RS07995 PF01434 Peptidase family M41 CJO90_RS08005 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CJO90_RS08005 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CJO90_RS08005 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CJO90_RS08005 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CJO90_RS08010 PF12849 PBP superfamily domain CJO90_RS08015 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS08020 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS08025 PF00005 ABC transporter CJO90_RS08030 PF01895 PhoU domain CJO90_RS08035 PF00486 Transcriptional regulatory protein, C terminal CJO90_RS08035 PF00072 Response regulator receiver domain CJO90_RS08040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS08040 PF11808 Phosphate regulon sensor protein PhoR CJO90_RS08040 PF00989 PAS fold CJO90_RS08040 PF00512 His Kinase A (phospho-acceptor) domain CJO90_RS08045 PF02503 Polyphosphate kinase middle domain CJO90_RS08045 PF13090 Polyphosphate kinase C-terminal domain 2 CJO90_RS08045 PF13089 Polyphosphate kinase N-terminal domain CJO90_RS08045 PF17941 Polyphosphate kinase C-terminal domain 1 CJO90_RS08050 PF02541 Ppx/GppA phosphatase family CJO90_RS08075 PF01925 Sulfite exporter TauE/SafE CJO90_RS08090 PF00753 Metallo-beta-lactamase superfamily CJO90_RS08095 PF13188 PAS domain CJO90_RS08095 PF03707 Bacterial signalling protein N terminal repeat CJO90_RS08095 PF00990 Diguanylate cyclase, GGDEF domain CJO90_RS08095 PF00563 EAL domain CJO90_RS08130 PF00589 Phage integrase family CJO90_RS08155 PF00239 Resolvase, N terminal domain CJO90_RS08155 PF02796 Helix-turn-helix domain of resolvase CJO90_RS08175 PF02954 Bacterial regulatory protein, Fis family CJO90_RS08195 PF10137 Predicted nucleotide-binding protein containing TIR-like domain CJO90_RS08205 PF00589 Phage integrase family CJO90_RS08230 PF02913 FAD linked oxidases, C-terminal domain CJO90_RS08230 PF01565 FAD binding domain CJO90_RS08240 PF03358 NADPH-dependent FMN reductase CJO90_RS08245 PF03631 Virulence factor BrkB CJO90_RS08260 PF01053 Cys/Met metabolism PLP-dependent enzyme CJO90_RS08270 PF07690 Major Facilitator Superfamily CJO90_RS08275 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CJO90_RS08275 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CJO90_RS08280 PF01264 Chorismate synthase CJO90_RS08295 PF00072 Response regulator receiver domain CJO90_RS08295 PF00196 Bacterial regulatory proteins, luxR family CJO90_RS08300 PF01144 Coenzyme A transferase CJO90_RS08305 PF01144 Coenzyme A transferase CJO90_RS08310 PF00106 short chain dehydrogenase CJO90_RS08320 PF01042 Endoribonuclease L-PSP CJO90_RS08325 PF04607 Region found in RelA / SpoT proteins CJO90_RS08325 PF13291 ACT domain CJO90_RS08325 PF02824 TGS domain CJO90_RS08335 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CJO90_RS08335 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CJO90_RS08335 PF02824 TGS domain CJO90_RS08335 PF03129 Anticodon binding domain CJO90_RS08340 PF00707 Translation initiation factor IF-3, C-terminal domain CJO90_RS08340 PF05198 Translation initiation factor IF-3, N-terminal domain CJO90_RS08345 PF01632 Ribosomal protein L35 CJO90_RS08350 PF00453 Ribosomal protein L20 CJO90_RS08355 PF01409 tRNA synthetases class II core domain (F) CJO90_RS08355 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CJO90_RS08360 PF03484 tRNA synthetase B5 domain CJO90_RS08360 PF01588 Putative tRNA binding domain CJO90_RS08360 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CJO90_RS08360 PF03483 B3/4 domain CJO90_RS08360 PF03147 Ferredoxin-fold anticodon binding domain CJO90_RS08365 PF00216 Bacterial DNA-binding protein CJO90_RS08395 PF11799 impB/mucB/samB family C-terminal domain CJO90_RS08395 PF00817 impB/mucB/samB family CJO90_RS08400 PF13520 Amino acid permease CJO90_RS08415 PF03328 HpcH/HpaI aldolase/citrate lyase family CJO90_RS08420 PF01047 MarR family CJO90_RS08430 PF07969 Amidohydrolase family CJO90_RS08435 PF01432 Peptidase family M3 CJO90_RS08440 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CJO90_RS08440 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CJO90_RS08475 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO90_RS08475 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CJO90_RS08485 PF09361 Phasin protein CJO90_RS08490 PF00850 Histone deacetylase domain CJO90_RS08505 PF00881 Nitroreductase family CJO90_RS08510 PF00768 D-alanyl-D-alanine carboxypeptidase CJO90_RS08515 PF01614 Bacterial transcriptional regulator CJO90_RS08515 PF09339 IclR helix-turn-helix domain CJO90_RS08520 PF02754 Cysteine-rich domain CJO90_RS08525 PF13183 4Fe-4S dicluster domain CJO90_RS08525 PF11870 Domain of unknown function (DUF3390) CJO90_RS08525 PF02589 LUD domain CJO90_RS08540 PF04377 Arginine-tRNA-protein transferase, C terminus CJO90_RS08540 PF04376 Arginine-tRNA-protein transferase, N terminus CJO90_RS08545 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CJO90_RS08565 PF01180 Dihydroorotate dehydrogenase CJO90_RS08575 PF02705 K+ potassium transporter CJO90_RS08585 PF17674 HHH domain CJO90_RS08585 PF00575 S1 RNA binding domain CJO90_RS08585 PF09371 Tex-like protein N-terminal domain CJO90_RS08585 PF16921 Tex protein YqgF-like domain CJO90_RS08600 PF13307 Helicase C-terminal domain CJO90_RS08600 PF04851 Type III restriction enzyme, res subunit CJO90_RS08605 PF13525 Outer membrane lipoprotein CJO90_RS08610 PF01479 S4 domain CJO90_RS08610 PF00849 RNA pseudouridylate synthase CJO90_RS08625 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus CJO90_RS08630 PF02803 Thiolase, C-terminal domain CJO90_RS08630 PF00108 Thiolase, N-terminal domain CJO90_RS08635 PF00106 short chain dehydrogenase CJO90_RS08640 PF05233 PHB accumulation regulatory domain CJO90_RS08640 PF07879 PHB/PHA accumulation regulator DNA-binding domain CJO90_RS08645 PF01207 Dihydrouridine synthase (Dus) CJO90_RS08650 PF04055 Radical SAM superfamily CJO90_RS08650 PF18693 TRAM domain CJO90_RS08650 PF00919 Uncharacterized protein family UPF0004 CJO90_RS08655 PF02803 Thiolase, C-terminal domain CJO90_RS08655 PF00108 Thiolase, N-terminal domain CJO90_RS08665 PF01053 Cys/Met metabolism PLP-dependent enzyme CJO90_RS08675 PF07687 Peptidase dimerisation domain CJO90_RS08675 PF01546 Peptidase family M20/M25/M40 CJO90_RS08680 PF17757 UvrB interaction domain CJO90_RS08680 PF03461 TRCF domain CJO90_RS08680 PF00271 Helicase conserved C-terminal domain CJO90_RS08680 PF00270 DEAD/DEAH box helicase CJO90_RS08680 PF02559 CarD-like/TRCF domain CJO90_RS08685 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CJO90_RS08690 PF02542 YgbB family CJO90_RS08695 PF02627 Carboxymuconolactone decarboxylase family CJO90_RS08700 PF00578 AhpC/TSA family CJO90_RS08705 PF00512 His Kinase A (phospho-acceptor) domain CJO90_RS08705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS08705 PF00672 HAMP domain CJO90_RS08710 PF00486 Transcriptional regulatory protein, C terminal CJO90_RS08710 PF00072 Response regulator receiver domain CJO90_RS08735 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJO90_RS08740 PF00873 AcrB/AcrD/AcrF family CJO90_RS08755 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CJO90_RS08755 PF01266 FAD dependent oxidoreductase CJO90_RS08760 PF05697 Bacterial trigger factor protein (TF) CJO90_RS08760 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CJO90_RS08760 PF05698 Bacterial trigger factor protein (TF) C-terminus CJO90_RS08765 PF00574 Clp protease CJO90_RS08770 PF10431 C-terminal, D2-small domain, of ClpB protein CJO90_RS08770 PF07724 AAA domain (Cdc48 subfamily) CJO90_RS08770 PF06689 ClpX C4-type zinc finger CJO90_RS08775 PF00004 ATPase family associated with various cellular activities (AAA) CJO90_RS08775 PF05362 Lon protease (S16) C-terminal proteolytic domain CJO90_RS08775 PF02190 ATP-dependent protease La (LON) substrate-binding domain CJO90_RS08780 PF00216 Bacterial DNA-binding protein CJO90_RS08800 PF01609 Transposase DDE domain CJO90_RS08800 PF13006 Insertion element 4 transposase N-terminal CJO90_RS08805 PF10502 Signal peptidase, peptidase S26 CJO90_RS08810 PF13472 GDSL-like Lipase/Acylhydrolase family CJO90_RS08815 PF00005 ABC transporter CJO90_RS08820 PF00342 Phosphoglucose isomerase CJO90_RS08825 PF01256 Carbohydrate kinase CJO90_RS08835 PF02769 AIR synthase related protein, C-terminal domain CJO90_RS08835 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CJO90_RS08835 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CJO90_RS08855 PF04055 Radical SAM superfamily CJO90_RS08855 PF13186 Iron-sulfur cluster-binding domain CJO90_RS08875 PF03466 LysR substrate binding domain CJO90_RS08875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS08885 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS08890 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS08900 PF00005 ABC transporter CJO90_RS08900 PF08402 TOBE domain CJO90_RS08905 PF00512 His Kinase A (phospho-acceptor) domain CJO90_RS08905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS08905 PF08521 Two-component sensor kinase N-terminal CJO90_RS08910 PF00486 Transcriptional regulatory protein, C terminal CJO90_RS08910 PF00072 Response regulator receiver domain CJO90_RS08915 PF13609 Gram-negative porin CJO90_RS08920 PF00005 ABC transporter CJO90_RS08945 PF00005 ABC transporter CJO90_RS08955 PF01722 BolA-like protein CJO90_RS08960 PF04279 Intracellular septation protein A CJO90_RS08965 PF01641 SelR domain CJO90_RS08970 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CJO90_RS08975 PF00501 AMP-binding enzyme CJO90_RS08975 PF13193 AMP-binding enzyme C-terminal domain CJO90_RS08980 PF13458 Periplasmic binding protein CJO90_RS08985 PF02653 Branched-chain amino acid transport system / permease component CJO90_RS08995 PF00005 ABC transporter CJO90_RS08995 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJO90_RS09000 PF00005 ABC transporter CJO90_RS09015 PF00324 Amino acid permease CJO90_RS09020 PF00324 Amino acid permease CJO90_RS09025 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CJO90_RS09025 PF00378 Enoyl-CoA hydratase/isomerase CJO90_RS09025 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CJO90_RS09030 PF00857 Isochorismatase family CJO90_RS09035 PF00108 Thiolase, N-terminal domain CJO90_RS09035 PF02803 Thiolase, C-terminal domain CJO90_RS09040 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJO90_RS09040 PF12806 Acetyl-CoA dehydrogenase C-terminal like CJO90_RS09040 PF02770 Acyl-CoA dehydrogenase, middle domain CJO90_RS09040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJO90_RS09055 PF00144 Beta-lactamase CJO90_RS09060 PF00107 Zinc-binding dehydrogenase CJO90_RS09060 PF16884 N-terminal domain of oxidoreductase CJO90_RS09065 PF00596 Class II Aldolase and Adducin N-terminal domain CJO90_RS09075 PF00106 short chain dehydrogenase CJO90_RS09080 PF00561 alpha/beta hydrolase fold CJO90_RS09085 PF00465 Iron-containing alcohol dehydrogenase CJO90_RS09090 PF07859 alpha/beta hydrolase fold CJO90_RS09115 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CJO90_RS09115 PF17287 POTRA domain CJO90_RS09115 PF08479 POTRA domain, ShlB-type CJO90_RS09130 PF01571 Aminomethyltransferase folate-binding domain CJO90_RS09135 PF02618 YceG-like family CJO90_RS09140 PF02223 Thymidylate kinase CJO90_RS09145 PF09115 DNA polymerase III, delta subunit, C terminal CJO90_RS09155 PF01026 TatD related DNase CJO90_RS09165 PF03781 Sulfatase-modifying factor enzyme 1 CJO90_RS09165 PF12867 DinB superfamily CJO90_RS09170 PF00356 Bacterial regulatory proteins, lacI family CJO90_RS09175 PF01547 Bacterial extracellular solute-binding protein CJO90_RS09185 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS09190 PF00005 ABC transporter CJO90_RS09190 PF08402 TOBE domain CJO90_RS09195 PF00149 Calcineurin-like phosphoesterase CJO90_RS09200 PF01510 N-acetylmuramoyl-L-alanine amidase CJO90_RS09205 PF00676 Dehydrogenase E1 component CJO90_RS09210 PF02779 Transketolase, pyrimidine binding domain CJO90_RS09210 PF02780 Transketolase, C-terminal domain CJO90_RS09215 PF00364 Biotin-requiring enzyme CJO90_RS09215 PF02817 e3 binding domain CJO90_RS09215 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CJO90_RS09230 PF01965 DJ-1/PfpI family CJO90_RS09235 PF00654 Voltage gated chloride channel CJO90_RS09240 PF08241 Methyltransferase domain CJO90_RS09250 PF00668 Condensation domain CJO90_RS09250 PF08242 Methyltransferase domain CJO90_RS09250 PF00501 AMP-binding enzyme CJO90_RS09250 PF00550 Phosphopantetheine attachment site CJO90_RS09255 PF00593 TonB dependent receptor CJO90_RS09255 PF07715 TonB-dependent Receptor Plug Domain CJO90_RS09260 PF04954 Siderophore-interacting protein CJO90_RS09260 PF08021 Siderophore-interacting FAD-binding domain CJO90_RS09260 PF00005 ABC transporter CJO90_RS09260 PF00664 ABC transporter transmembrane region CJO90_RS09265 PF08021 Siderophore-interacting FAD-binding domain CJO90_RS09265 PF04954 Siderophore-interacting protein CJO90_RS09265 PF00664 ABC transporter transmembrane region CJO90_RS09265 PF00005 ABC transporter CJO90_RS09270 PF00668 Condensation domain CJO90_RS09270 PF02801 Beta-ketoacyl synthase, C-terminal domain CJO90_RS09270 PF00109 Beta-ketoacyl synthase, N-terminal domain CJO90_RS09270 PF00698 Acyl transferase domain CJO90_RS09270 PF00550 Phosphopantetheine attachment site CJO90_RS09270 PF16197 Ketoacyl-synthetase C-terminal extension CJO90_RS09275 PF00550 Phosphopantetheine attachment site CJO90_RS09275 PF08242 Methyltransferase domain CJO90_RS09275 PF00668 Condensation domain CJO90_RS09275 PF00501 AMP-binding enzyme CJO90_RS09285 PF02311 AraC-like ligand binding domain CJO90_RS09285 PF12833 Helix-turn-helix domain CJO90_RS09290 PF03377 TAL effector repeat CJO90_RS09295 PF00583 Acetyltransferase (GNAT) family CJO90_RS09305 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CJO90_RS09335 PF17645 Arylmalonate decarboxylase CJO90_RS09345 PF01557 Fumarylacetoacetate (FAA) hydrolase family CJO90_RS09350 PF07883 Cupin domain CJO90_RS09355 PF01494 FAD binding domain CJO90_RS09375 PF12833 Helix-turn-helix domain CJO90_RS09375 PF14525 AraC-binding-like domain CJO90_RS09390 PF04199 Putative cyclase CJO90_RS09395 PF01613 Flavin reductase like domain CJO90_RS09400 PF17885 Styrene monooxygenase A putative substrate binding domain CJO90_RS09420 PF00155 Aminotransferase class I and II CJO90_RS09470 PF07690 Major Facilitator Superfamily CJO90_RS09475 PF13533 Biotin-lipoyl like CJO90_RS09480 PF02321 Outer membrane efflux protein CJO90_RS09495 PF00392 Bacterial regulatory proteins, gntR family CJO90_RS09495 PF00155 Aminotransferase class I and II CJO90_RS09500 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CJO90_RS09500 PF06481 COX Aromatic Rich Motif CJO90_RS09505 PF00115 Cytochrome C and Quinol oxidase polypeptide I CJO90_RS09510 PF00510 Cytochrome c oxidase subunit III CJO90_RS09555 PF00155 Aminotransferase class I and II CJO90_RS09560 PF00202 Aminotransferase class-III CJO90_RS09585 PF03466 LysR substrate binding domain CJO90_RS09585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS09590 PF05981 CreA protein CJO90_RS09595 PF01799 [2Fe-2S] binding domain CJO90_RS09595 PF00111 2Fe-2S iron-sulfur cluster binding domain CJO90_RS09600 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CJO90_RS09600 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CJO90_RS09625 PF02625 XdhC and CoxI family CJO90_RS09625 PF13478 XdhC Rossmann domain CJO90_RS09635 PF02308 MgtC family CJO90_RS09640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO90_RS09640 PF00672 HAMP domain CJO90_RS09640 PF02203 Tar ligand binding domain homologue CJO90_RS09650 PF00723 Glycosyl hydrolases family 15 CJO90_RS09660 PF00171 Aldehyde dehydrogenase family CJO90_RS09675 PF00005 ABC transporter CJO90_RS09675 PF12848 ABC transporter CJO90_RS09680 PF17676 LD-carboxypeptidase C-terminal domain CJO90_RS09680 PF02016 LD-carboxypeptidase N-terminal domain CJO90_RS09685 PF14437 MafB19-like deaminase CJO90_RS09690 PF01242 6-pyruvoyl tetrahydropterin synthase CJO90_RS09715 PF13657 HipA N-terminal domain CJO90_RS09715 PF07804 HipA-like C-terminal domain CJO90_RS09735 PF00775 Dioxygenase CJO90_RS09740 PF00775 Dioxygenase CJO90_RS09740 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal CJO90_RS09745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS09745 PF03466 LysR substrate binding domain CJO90_RS09795 PF00958 GMP synthase C terminal domain CJO90_RS09795 PF00117 Glutamine amidotransferase class-I CJO90_RS09795 PF02540 NAD synthase CJO90_RS09805 PF00478 IMP dehydrogenase / GMP reductase domain CJO90_RS09805 PF00571 CBS domain CJO90_RS09810 PF00892 EamA-like transporter family CJO90_RS09820 PF03658 RnfH family Ubiquitin CJO90_RS09825 PF03364 Polyketide cyclase / dehydrase and lipid transport CJO90_RS09830 PF01668 SmpB protein CJO90_RS09835 PF01145 SPFH domain / Band 7 family CJO90_RS09835 PF16200 C-terminal region of band_7 CJO90_RS09845 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CJO90_RS09845 PF02896 PEP-utilising enzyme, TIM barrel domain CJO90_RS09845 PF00391 PEP-utilising enzyme, mobile domain CJO90_RS09850 PF03618 Kinase/pyrophosphorylase CJO90_RS09855 PF08032 RNA 2'-O ribose methyltransferase substrate binding CJO90_RS09855 PF00588 SpoU rRNA Methylase family CJO90_RS09860 PF01351 Ribonuclease HII CJO90_RS09865 PF02684 Lipid-A-disaccharide synthetase CJO90_RS09870 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CJO90_RS09870 PF00132 Bacterial transferase hexapeptide (six repeats) CJO90_RS09875 PF07977 FabA-like domain CJO90_RS09880 PF00132 Bacterial transferase hexapeptide (six repeats) CJO90_RS09880 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CJO90_RS09885 PF03938 Outer membrane protein (OmpH-like) CJO90_RS09890 PF01103 Surface antigen CJO90_RS09890 PF07244 Surface antigen variable number repeat CJO90_RS09900 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CJO90_RS09900 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CJO90_RS09900 PF13288 DXP reductoisomerase C-terminal domain CJO90_RS09910 PF01255 Putative undecaprenyl diphosphate synthase CJO90_RS09915 PF01765 Ribosome recycling factor CJO90_RS09920 PF00696 Amino acid kinase family CJO90_RS09925 PF00889 Elongation factor TS CJO90_RS09930 PF00318 Ribosomal protein S2 CJO90_RS09935 PF00557 Metallopeptidase family M24 CJO90_RS09940 PF01966 HD domain CJO90_RS09940 PF08335 GlnD PII-uridylyltransferase CJO90_RS09940 PF01909 Nucleotidyltransferase domain CJO90_RS09945 PF00849 RNA pseudouridylate synthase CJO90_RS09945 PF01479 S4 domain CJO90_RS09955 PF01327 Polypeptide deformylase CJO90_RS09960 PF00533 BRCA1 C Terminus (BRCT) domain CJO90_RS09960 PF03120 NAD-dependent DNA ligase OB-fold domain CJO90_RS09960 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CJO90_RS09960 PF01653 NAD-dependent DNA ligase adenylation domain CJO90_RS09960 PF12826 Helix-hairpin-helix motif CJO90_RS09970 PF02463 RecF/RecN/SMC N terminal domain CJO90_RS09970 PF06470 SMC proteins Flexible Hinge Domain CJO90_RS09975 PF00561 alpha/beta hydrolase fold CJO90_RS09985 PF00155 Aminotransferase class I and II CJO90_RS09990 PF14602 Hexapeptide repeat of succinyl-transferase CJO90_RS09990 PF00132 Bacterial transferase hexapeptide (six repeats) CJO90_RS09990 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CJO90_RS10000 PF03960 ArsC family CJO90_RS10005 PF01546 Peptidase family M20/M25/M40 CJO90_RS10005 PF07687 Peptidase dimerisation domain CJO90_RS10015 PF05175 Methyltransferase small domain CJO90_RS10020 PF01227 GTP cyclohydrolase I CJO90_RS10040 PF03576 Peptidase family S58 CJO90_RS10045 PF12911 N-terminal TM domain of oligopeptide transport permease C CJO90_RS10045 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS10050 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS10055 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJO90_RS10060 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJO90_RS10060 PF00005 ABC transporter CJO90_RS10065 PF01112 Asparaginase CJO90_RS10075 PF00005 ABC transporter CJO90_RS10075 PF12848 ABC transporter CJO90_RS10080 PF02515 CoA-transferase family III CJO90_RS10085 PF04463 Protein of unknown function (DUF523) CJO90_RS10090 PF02600 Disulfide bond formation protein DsbB CJO90_RS10095 PF18073 Rubredoxin metal binding domain CJO90_RS10100 PF01168 Alanine racemase, N-terminal domain CJO90_RS10100 PF00842 Alanine racemase, C-terminal domain CJO90_RS10105 PF07690 Major Facilitator Superfamily CJO90_RS10110 PF03167 Uracil DNA glycosylase superfamily CJO90_RS10115 PF00583 Acetyltransferase (GNAT) family CJO90_RS10120 PF00814 Glycoprotease family CJO90_RS10130 PF07690 Major Facilitator Superfamily CJO90_RS10140 PF01274 Malate synthase CJO90_RS10155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS10155 PF03466 LysR substrate binding domain CJO90_RS10165 PF00463 Isocitrate lyase family CJO90_RS10185 PF03737 Aldolase/RraA CJO90_RS10195 PF04397 LytTr DNA-binding domain CJO90_RS10195 PF00072 Response regulator receiver domain CJO90_RS10200 PF07694 5TMR of 5TMR-LYT CJO90_RS10200 PF06580 Histidine kinase CJO90_RS10225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS10225 PF03466 LysR substrate binding domain CJO90_RS10230 PF12857 TOBE-like domain CJO90_RS10230 PF17850 CysA C-terminal regulatory domain CJO90_RS10230 PF00005 ABC transporter CJO90_RS10235 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS10240 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS10255 PF00005 ABC transporter CJO90_RS10255 PF03459 TOBE domain CJO90_RS10260 PF00005 ABC transporter CJO90_RS10265 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS10270 PF00296 Luciferase-like monooxygenase CJO90_RS10275 PF09084 NMT1/THI5 like CJO90_RS10280 PF03358 NADPH-dependent FMN reductase CJO90_RS10290 PF06826 Predicted Permease Membrane Region CJO90_RS10295 PF00390 Malic enzyme, N-terminal domain CJO90_RS10295 PF03949 Malic enzyme, NAD binding domain CJO90_RS10300 PF01070 FMN-dependent dehydrogenase CJO90_RS10305 PF00072 Response regulator receiver domain CJO90_RS10305 PF00158 Sigma-54 interaction domain CJO90_RS10305 PF02954 Bacterial regulatory protein, Fis family CJO90_RS10310 PF00512 His Kinase A (phospho-acceptor) domain CJO90_RS10310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS10320 PF02910 Fumarate reductase flavoprotein C-term CJO90_RS10320 PF00890 FAD binding domain CJO90_RS10325 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CJO90_RS10325 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CJO90_RS10325 PF10531 SLBB domain CJO90_RS10330 PF10431 C-terminal, D2-small domain, of ClpB protein CJO90_RS10330 PF17871 AAA lid domain CJO90_RS10330 PF07724 AAA domain (Cdc48 subfamily) CJO90_RS10330 PF00004 ATPase family associated with various cellular activities (AAA) CJO90_RS10330 PF02861 Clp amino terminal domain, pathogenicity island component CJO90_RS10335 PF10605 3HB-oligomer hydrolase (3HBOH) CJO90_RS10340 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CJO90_RS10345 PF02391 MoaE protein CJO90_RS10350 PF02597 ThiS family CJO90_RS10355 PF03453 MoeA N-terminal region (domain I and II) CJO90_RS10355 PF03454 MoeA C-terminal region (domain IV) CJO90_RS10355 PF00994 Probable molybdopterin binding domain CJO90_RS10360 PF03167 Uracil DNA glycosylase superfamily CJO90_RS10365 PF00291 Pyridoxal-phosphate dependent enzyme CJO90_RS10365 PF14821 Threonine synthase N terminus CJO90_RS10370 PF01842 ACT domain CJO90_RS10370 PF00742 Homoserine dehydrogenase CJO90_RS10370 PF03447 Homoserine dehydrogenase, NAD binding domain CJO90_RS10375 PF00155 Aminotransferase class I and II CJO90_RS10385 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CJO90_RS10395 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CJO90_RS10400 PF00535 Glycosyl transferase family 2 CJO90_RS10405 PF00551 Formyl transferase CJO90_RS10405 PF02911 Formyl transferase, C-terminal domain CJO90_RS10405 PF01370 NAD dependent epimerase/dehydratase family CJO90_RS10410 PF01370 NAD dependent epimerase/dehydratase family CJO90_RS10410 PF02911 Formyl transferase, C-terminal domain CJO90_RS10410 PF00551 Formyl transferase CJO90_RS10415 PF01522 Polysaccharide deacetylase CJO90_RS10420 PF00578 AhpC/TSA family CJO90_RS10425 PF13638 PIN domain CJO90_RS10425 PF02562 PhoH-like protein CJO90_RS10435 PF00877 NlpC/P60 family CJO90_RS10440 PF01384 Phosphate transporter family CJO90_RS10450 PF03796 DnaB-like helicase C terminal domain CJO90_RS10450 PF00772 DnaB-like helicase N terminal domain CJO90_RS10455 PF03948 Ribosomal protein L9, C-terminal domain CJO90_RS10455 PF01281 Ribosomal protein L9, N-terminal domain CJO90_RS10460 PF01084 Ribosomal protein S18 CJO90_RS10470 PF01250 Ribosomal protein S6 CJO90_RS10475 PF17763 Glutaminase/Asparaginase C-terminal domain CJO90_RS10475 PF00710 Asparaginase, N-terminal CJO90_RS10480 PF00175 Oxidoreductase NAD-binding domain CJO90_RS10480 PF00970 Oxidoreductase FAD-binding domain CJO90_RS10485 PF01726 LexA DNA binding domain CJO90_RS10485 PF00717 Peptidase S24-like CJO90_RS10500 PF07687 Peptidase dimerisation domain CJO90_RS10500 PF01546 Peptidase family M20/M25/M40 CJO90_RS10520 PF01207 Dihydrouridine synthase (Dus) CJO90_RS10525 PF00378 Enoyl-CoA hydratase/isomerase CJO90_RS10535 PF00679 Elongation factor G C-terminus CJO90_RS10535 PF03144 Elongation factor Tu domain 2 CJO90_RS10535 PF00009 Elongation factor Tu GTP binding domain CJO90_RS10540 PF01047 MarR family CJO90_RS10545 PF02321 Outer membrane efflux protein CJO90_RS10550 PF00529 HlyD membrane-fusion protein of T1SS CJO90_RS10550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJO90_RS10555 PF07690 Major Facilitator Superfamily CJO90_RS10560 PF16198 tRNA pseudouridylate synthase B C-terminal domain CJO90_RS10560 PF09157 Pseudouridine synthase II TruB, C-terminal CJO90_RS10560 PF01509 TruB family pseudouridylate synthase (N terminal domain) CJO90_RS10565 PF02033 Ribosome-binding factor A CJO90_RS10570 PF00009 Elongation factor Tu GTP binding domain CJO90_RS10570 PF04760 Translation initiation factor IF-2, N-terminal region CJO90_RS10570 PF08364 Bacterial translation initiation factor IF-2 associated region CJO90_RS10570 PF11987 Translation-initiation factor 2 CJO90_RS10575 PF08529 NusA N-terminal domain CJO90_RS10575 PF13184 NusA-like KH domain CJO90_RS10580 PF17384 RimP C-terminal SH3 domain CJO90_RS10580 PF02576 RimP N-terminal domain CJO90_RS10585 PF00849 RNA pseudouridylate synthase CJO90_RS10585 PF01479 S4 domain CJO90_RS10590 PF04079 Segregation and condensation complex subunit ScpB CJO90_RS10600 PF00027 Cyclic nucleotide-binding domain CJO90_RS10600 PF13545 Crp-like helix-turn-helix domain CJO90_RS10615 PF13746 4Fe-4S dicluster domain CJO90_RS10615 PF12801 4Fe-4S binding domain CJO90_RS10615 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CJO90_RS10620 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CJO90_RS10620 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CJO90_RS10635 PF00115 Cytochrome C and Quinol oxidase polypeptide I CJO90_RS10645 PF00403 Heavy-metal-associated domain CJO90_RS10655 PF03969 AFG1-like ATPase CJO90_RS10660 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CJO90_RS10660 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO90_RS10665 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CJO90_RS10665 PF00364 Biotin-requiring enzyme CJO90_RS10665 PF02817 e3 binding domain CJO90_RS10670 PF02779 Transketolase, pyrimidine binding domain CJO90_RS10670 PF00676 Dehydrogenase E1 component CJO90_RS10670 PF16078 2-oxoglutarate dehydrogenase N-terminus CJO90_RS10670 PF16870 2-oxoglutarate dehydrogenase C-terminal CJO90_RS10675 PF03009 Glycerophosphoryl diester phosphodiesterase family CJO90_RS10680 PF00005 ABC transporter CJO90_RS10680 PF17912 MalK OB fold domain CJO90_RS10685 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS10690 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS10695 PF13416 Bacterial extracellular solute-binding protein CJO90_RS10710 PF00158 Sigma-54 interaction domain CJO90_RS10710 PF00072 Response regulator receiver domain CJO90_RS10710 PF02954 Bacterial regulatory protein, Fis family CJO90_RS10725 PF00120 Glutamine synthetase, catalytic domain CJO90_RS10725 PF03951 Glutamine synthetase, beta-Grasp domain CJO90_RS10735 PF00994 Probable molybdopterin binding domain CJO90_RS10735 PF18146 Damage-inducible protein CinA KH domain CJO90_RS10735 PF02464 Competence-damaged protein CJO90_RS10760 PF00271 Helicase conserved C-terminal domain CJO90_RS10760 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CJO90_RS10760 PF00270 DEAD/DEAH box helicase CJO90_RS10760 PF04408 Helicase associated domain (HA2) CJO90_RS10760 PF11898 Domain of unknown function (DUF3418) CJO90_RS10765 PF00696 Amino acid kinase family CJO90_RS10765 PF00583 Acetyltransferase (GNAT) family CJO90_RS10770 PF01380 SIS domain CJO90_RS10770 PF01418 Helix-turn-helix domain, rpiR family CJO90_RS10775 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CJO90_RS10775 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CJO90_RS10785 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CJO90_RS10785 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CJO90_RS10795 PF01261 Xylose isomerase-like TIM barrel CJO90_RS10800 PF02653 Branched-chain amino acid transport system / permease component CJO90_RS10805 PF00005 ABC transporter CJO90_RS10810 PF13407 Periplasmic binding protein domain CJO90_RS10815 PF00294 pfkB family carbohydrate kinase CJO90_RS10820 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CJO90_RS10820 PF00205 Thiamine pyrophosphate enzyme, central domain CJO90_RS10820 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CJO90_RS10825 PF01261 Xylose isomerase-like TIM barrel CJO90_RS10830 PF04962 KduI/IolB family CJO90_RS10840 PF04362 Bacterial Fe(2+) trafficking CJO90_RS10845 PF00672 HAMP domain CJO90_RS10845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO90_RS10850 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CJO90_RS10855 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CJO90_RS10860 PF00923 Transaldolase/Fructose-6-phosphate aldolase CJO90_RS10865 PF02146 Sir2 family CJO90_RS10870 PF00588 SpoU rRNA Methylase family CJO90_RS10870 PF08032 RNA 2'-O ribose methyltransferase substrate binding CJO90_RS10875 PF17876 Cold shock domain CJO90_RS10875 PF08206 Ribonuclease B OB domain CJO90_RS10875 PF08461 Ribonuclease R winged-helix domain CJO90_RS10875 PF00773 RNB domain CJO90_RS10875 PF00575 S1 RNA binding domain CJO90_RS10885 PF00156 Phosphoribosyl transferase domain CJO90_RS10890 PF00709 Adenylosuccinate synthetase CJO90_RS10895 PF13393 Histidyl-tRNA synthetase CJO90_RS10905 PF01145 SPFH domain / Band 7 family CJO90_RS10910 PF01145 SPFH domain / Band 7 family CJO90_RS10910 PF12221 Bacterial membrane protein N terminal CJO90_RS10915 PF13167 GTP-binding GTPase N-terminal CJO90_RS10915 PF16360 GTP-binding GTPase Middle Region CJO90_RS10915 PF01926 50S ribosome-binding GTPase CJO90_RS10920 PF17209 Hfq protein CJO90_RS10925 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CJO90_RS10925 PF01926 50S ribosome-binding GTPase CJO90_RS10930 PF13360 PQQ-like domain CJO90_RS10935 PF09976 Tetratricopeptide repeat-like domain CJO90_RS10940 PF03129 Anticodon binding domain CJO90_RS10940 PF13393 Histidyl-tRNA synthetase CJO90_RS10945 PF04551 GcpE protein CJO90_RS10960 PF04055 Radical SAM superfamily CJO90_RS10965 PF00334 Nucleoside diphosphate kinase CJO90_RS10970 PF01027 Inhibitor of apoptosis-promoting Bax1 CJO90_RS10975 PF01938 TRAM domain CJO90_RS10975 PF05958 tRNA (Uracil-5-)-methyltransferase CJO90_RS10985 PF04542 Sigma-70 region 2 CJO90_RS10985 PF04545 Sigma-70, region 4 CJO90_RS10985 PF00140 Sigma-70 factor, region 1.2 CJO90_RS10985 PF04539 Sigma-70 region 3 CJO90_RS10990 PF01551 Peptidase family M23 CJO90_RS10990 PF01476 LysM domain CJO90_RS11000 PF01975 Survival protein SurE CJO90_RS11005 PF08240 Alcohol dehydrogenase GroES-like domain CJO90_RS11005 PF00107 Zinc-binding dehydrogenase CJO90_RS11005 PF16197 Ketoacyl-synthetase C-terminal extension CJO90_RS11005 PF00109 Beta-ketoacyl synthase, N-terminal domain CJO90_RS11005 PF02801 Beta-ketoacyl synthase, C-terminal domain CJO90_RS11005 PF14765 Polyketide synthase dehydratase CJO90_RS11005 PF08659 KR domain CJO90_RS11005 PF00698 Acyl transferase domain CJO90_RS11005 PF00550 Phosphopantetheine attachment site CJO90_RS11010 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CJO90_RS11015 PF00440 Bacterial regulatory proteins, tetR family CJO90_RS11015 PF16925 Tetracyclin repressor-like, C-terminal domain CJO90_RS11020 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS11025 PF00005 ABC transporter CJO90_RS11035 PF02515 CoA-transferase family III CJO90_RS11050 PF02132 RecR protein CJO90_RS11050 PF13662 Toprim domain CJO90_RS11055 PF02575 YbaB/EbfC DNA-binding family CJO90_RS11060 PF12169 DNA polymerase III subunits gamma and tau domain III CJO90_RS11060 PF12170 DNA polymerase III tau subunit V interacting with alpha CJO90_RS11060 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CJO90_RS11070 PF12705 PD-(D/E)XK nuclease superfamily CJO90_RS11070 PF13361 UvrD-like helicase C-terminal domain CJO90_RS11070 PF00580 UvrD/REP helicase N-terminal domain CJO90_RS11080 PF00085 Thioredoxin CJO90_RS11085 PF07497 Rho termination factor, RNA-binding domain CJO90_RS11085 PF07498 Rho termination factor, N-terminal domain CJO90_RS11085 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJO90_RS11095 PF00196 Bacterial regulatory proteins, luxR family CJO90_RS11095 PF00072 Response regulator receiver domain CJO90_RS11100 PF06167 Glucose-regulated metallo-peptidase M90 CJO90_RS11110 PF01197 Ribosomal protein L31 CJO90_RS11120 PF01554 MatE CJO90_RS11155 PF00749 tRNA synthetases class I (E and Q), catalytic domain CJO90_RS11160 PF01734 Patatin-like phospholipase CJO90_RS11165 PF00877 NlpC/P60 family CJO90_RS11170 PF00005 ABC transporter CJO90_RS11170 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CJO90_RS11175 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS11175 PF12911 N-terminal TM domain of oligopeptide transport permease C CJO90_RS11180 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS11185 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJO90_RS11200 PF13840 ACT domain CJO90_RS11200 PF00696 Amino acid kinase family CJO90_RS11200 PF01842 ACT domain CJO90_RS11205 PF01171 PP-loop family CJO90_RS11205 PF11734 TilS substrate C-terminal domain CJO90_RS11205 PF09179 TilS substrate binding domain CJO90_RS11210 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CJO90_RS11215 PF00730 HhH-GPD superfamily base excision DNA repair protein CJO90_RS11220 PF09190 DALR domain CJO90_RS11220 PF01406 tRNA synthetases class I (C) catalytic domain CJO90_RS11230 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CJO90_RS11235 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CJO90_RS11240 PF00149 Calcineurin-like phosphoesterase CJO90_RS11245 PF00132 Bacterial transferase hexapeptide (six repeats) CJO90_RS11250 PF00588 SpoU rRNA Methylase family CJO90_RS11255 PF00459 Inositol monophosphatase family CJO90_RS11260 PF01381 Helix-turn-helix CJO90_RS11260 PF08671 Anti-repressor SinI CJO90_RS11265 PF00117 Glutamine amidotransferase class-I CJO90_RS11270 PF03473 MOSC domain CJO90_RS11270 PF03475 3-alpha domain CJO90_RS11275 PF00672 HAMP domain CJO90_RS11275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO90_RS11275 PF02203 Tar ligand binding domain homologue CJO90_RS11280 PF00672 HAMP domain CJO90_RS11280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO90_RS11280 PF17200 Single Cache domain 2 CJO90_RS11285 PF00248 Aldo/keto reductase family CJO90_RS11290 PF07690 Major Facilitator Superfamily CJO90_RS11295 PF03466 LysR substrate binding domain CJO90_RS11295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS11300 PF01624 MutS domain I CJO90_RS11300 PF00488 MutS domain V CJO90_RS11300 PF05188 MutS domain II CJO90_RS11300 PF05190 MutS family domain IV CJO90_RS11300 PF05192 MutS domain III CJO90_RS11310 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CJO90_RS11315 PF08007 Cupin superfamily protein CJO90_RS11320 PF03099 Biotin/lipoate A/B protein ligase family CJO90_RS11320 PF12706 Beta-lactamase superfamily domain CJO90_RS11325 PF06804 NlpB/DapX lipoprotein CJO90_RS11330 PF00701 Dihydrodipicolinate synthetase family CJO90_RS11340 PF00579 tRNA synthetases class I (W and Y) CJO90_RS11345 PF02163 Peptidase family M50 CJO90_RS11350 PF01300 Telomere recombination CJO90_RS11355 PF02811 PHP domain CJO90_RS11360 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO90_RS11375 PF04134 Protein of unknown function, DUF393 CJO90_RS11380 PF00561 alpha/beta hydrolase fold CJO90_RS11385 PF04305 Protein of unknown function (DUF455) CJO90_RS11390 PF00132 Bacterial transferase hexapeptide (six repeats) CJO90_RS11395 PF01430 Hsp33 protein CJO90_RS11405 PF04977 Septum formation initiator CJO90_RS11410 PF03952 Enolase, N-terminal domain CJO90_RS11410 PF00113 Enolase, C-terminal TIM barrel domain CJO90_RS11420 PF00793 DAHP synthetase I family CJO90_RS11425 PF06418 CTP synthase N-terminus CJO90_RS11425 PF00117 Glutamine amidotransferase class-I CJO90_RS11440 PF08379 Bacterial transglutaminase-like N-terminal region CJO90_RS11440 PF01841 Transglutaminase-like superfamily CJO90_RS11450 PF14403 Circularly permuted ATP-grasp type 2 CJO90_RS11455 PF03772 Competence protein CJO90_RS11455 PF00753 Metallo-beta-lactamase superfamily CJO90_RS11460 PF01026 TatD related DNase CJO90_RS11465 PF00005 ABC transporter CJO90_RS11470 PF12704 MacB-like periplasmic core domain CJO90_RS11470 PF02687 FtsX-like permease family CJO90_RS11480 PF02272 DHHA1 domain CJO90_RS11480 PF17768 RecJ OB domain CJO90_RS11480 PF01368 DHH family CJO90_RS11485 PF11953 Domain of unknown function (DUF3470) CJO90_RS11485 PF00037 4Fe-4S binding domain CJO90_RS11510 PF03601 Conserved hypothetical protein 698 CJO90_RS11515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS11515 PF03466 LysR substrate binding domain CJO90_RS11540 PF00551 Formyl transferase CJO90_RS11555 PF01571 Aminomethyltransferase folate-binding domain CJO90_RS11555 PF08669 Glycine cleavage T-protein C-terminal barrel domain CJO90_RS11555 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO90_RS11555 PF17806 Sarcosine oxidase A3 domain CJO90_RS11560 PF04267 Sarcosine oxidase, delta subunit family CJO90_RS11565 PF01266 FAD dependent oxidoreductase CJO90_RS11575 PF12833 Helix-turn-helix domain CJO90_RS11575 PF01965 DJ-1/PfpI family CJO90_RS11580 PF01381 Helix-turn-helix CJO90_RS11585 PF00155 Aminotransferase class I and II CJO90_RS11595 PF03466 LysR substrate binding domain CJO90_RS11595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS11600 PF07690 Major Facilitator Superfamily CJO90_RS11605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS11605 PF03466 LysR substrate binding domain CJO90_RS11610 PF00175 Oxidoreductase NAD-binding domain CJO90_RS11610 PF00111 2Fe-2S iron-sulfur cluster binding domain CJO90_RS11610 PF00970 Oxidoreductase FAD-binding domain CJO90_RS11615 PF00355 Rieske [2Fe-2S] domain CJO90_RS11615 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CJO90_RS11620 PF13577 SnoaL-like domain CJO90_RS11625 PF00355 Rieske [2Fe-2S] domain CJO90_RS11630 PF07883 Cupin domain CJO90_RS11635 PF01557 Fumarylacetoacetate (FAA) hydrolase family CJO90_RS11640 PF02798 Glutathione S-transferase, N-terminal domain CJO90_RS11640 PF14497 Glutathione S-transferase, C-terminal domain CJO90_RS11645 PF13609 Gram-negative porin CJO90_RS11655 PF13609 Gram-negative porin CJO90_RS11660 PF17137 Domain of unknown function (DUF5110) CJO90_RS11660 PF01055 Glycosyl hydrolases family 31 CJO90_RS11660 PF16338 Domain of unknown function (DUF4968) CJO90_RS11660 PF13802 Galactose mutarotase-like CJO90_RS11665 PF07690 Major Facilitator Superfamily CJO90_RS11670 PF13378 Enolase C-terminal domain-like CJO90_RS11670 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CJO90_RS11675 PF07729 FCD domain CJO90_RS11675 PF00392 Bacterial regulatory proteins, gntR family CJO90_RS11680 PF01609 Transposase DDE domain CJO90_RS11680 PF13006 Insertion element 4 transposase N-terminal CJO90_RS11690 PF00486 Transcriptional regulatory protein, C terminal CJO90_RS11690 PF00072 Response regulator receiver domain CJO90_RS11700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS11700 PF16736 Single Cache-like CJO90_RS11700 PF00989 PAS fold CJO90_RS11700 PF00512 His Kinase A (phospho-acceptor) domain CJO90_RS11710 PF00486 Transcriptional regulatory protein, C terminal CJO90_RS11710 PF00072 Response regulator receiver domain CJO90_RS11730 PF01066 CDP-alcohol phosphatidyltransferase CJO90_RS11735 PF08459 UvrC Helix-hairpin-helix N-terminal CJO90_RS11735 PF02151 UvrB/uvrC motif CJO90_RS11735 PF01541 GIY-YIG catalytic domain CJO90_RS11745 PF09285 Elongation factor P, C-terminal CJO90_RS11745 PF01132 Elongation factor P (EF-P) OB domain CJO90_RS11745 PF08207 Elongation factor P (EF-P) KOW-like domain CJO90_RS11750 PF00933 Glycosyl hydrolase family 3 N terminal domain CJO90_RS11755 PF01648 4'-phosphopantetheinyl transferase superfamily CJO90_RS11760 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CJO90_RS11770 PF07650 KH domain CJO90_RS11770 PF01926 50S ribosome-binding GTPase CJO90_RS11775 PF00035 Double-stranded RNA binding motif CJO90_RS11775 PF14622 Ribonuclease-III-like CJO90_RS11785 PF10502 Signal peptidase, peptidase S26 CJO90_RS11790 PF06421 GTP-binding protein LepA C-terminus CJO90_RS11790 PF00679 Elongation factor G C-terminus CJO90_RS11790 PF03144 Elongation factor Tu domain 2 CJO90_RS11790 PF00009 Elongation factor Tu GTP binding domain CJO90_RS11800 PF13180 PDZ domain CJO90_RS11800 PF17820 PDZ domain CJO90_RS11815 PF04542 Sigma-70 region 2 CJO90_RS11815 PF08281 Sigma-70, region 4 CJO90_RS11825 PF02801 Beta-ketoacyl synthase, C-terminal domain CJO90_RS11825 PF00109 Beta-ketoacyl synthase, N-terminal domain CJO90_RS11830 PF00550 Phosphopantetheine attachment site CJO90_RS11840 PF00698 Acyl transferase domain CJO90_RS11845 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CJO90_RS11845 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CJO90_RS11850 PF02504 Fatty acid synthesis protein CJO90_RS11855 PF01783 Ribosomal L32p protein family CJO90_RS11860 PF02620 Large ribosomal RNA subunit accumulation protein YceD CJO90_RS11865 PF02545 Maf-like protein CJO90_RS11870 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJO90_RS11875 PF06965 Na+/H+ antiporter 1 CJO90_RS11875 PF01343 Peptidase family S49 CJO90_RS11885 PF13419 Haloacid dehalogenase-like hydrolase CJO90_RS11890 PF00849 RNA pseudouridylate synthase CJO90_RS11890 PF01479 S4 domain CJO90_RS11895 PF00575 S1 RNA binding domain CJO90_RS11895 PF10150 Ribonuclease E/G family CJO90_RS11895 PF12111 Polyribonucleotide phosphorylase C terminal CJO90_RS11900 PF04055 Radical SAM superfamily CJO90_RS11900 PF06463 Molybdenum Cofactor Synthesis C CJO90_RS11905 PF12804 MobA-like NTP transferase domain CJO90_RS11910 PF03454 MoeA C-terminal region (domain IV) CJO90_RS11910 PF00994 Probable molybdopterin binding domain CJO90_RS11910 PF03453 MoeA N-terminal region (domain I and II) CJO90_RS11920 PF02646 RmuC family CJO90_RS11935 PF02589 LUD domain CJO90_RS11940 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CJO90_RS11940 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CJO90_RS11950 PF00106 short chain dehydrogenase CJO90_RS11955 PF00152 tRNA synthetases class II (D, K and N) CJO90_RS11955 PF01336 OB-fold nucleic acid binding domain CJO90_RS11965 PF13006 Insertion element 4 transposase N-terminal CJO90_RS11965 PF01609 Transposase DDE domain CJO90_RS11970 PF04384 Iron-sulphur cluster assembly CJO90_RS11975 PF00111 2Fe-2S iron-sulfur cluster binding domain CJO90_RS11980 PF00012 Hsp70 protein CJO90_RS11985 PF07743 HSCB C-terminal oligomerisation domain CJO90_RS11985 PF00226 DnaJ domain CJO90_RS11995 PF01521 Iron-sulphur cluster biosynthesis CJO90_RS12000 PF01592 NifU-like N terminal domain CJO90_RS12005 PF00266 Aminotransferase class-V CJO90_RS12010 PF02082 Transcriptional regulator CJO90_RS12015 PF13407 Periplasmic binding protein domain CJO90_RS12020 PF00005 ABC transporter CJO90_RS12025 PF02653 Branched-chain amino acid transport system / permease component CJO90_RS12030 PF00356 Bacterial regulatory proteins, lacI family CJO90_RS12035 PF00294 pfkB family carbohydrate kinase CJO90_RS12045 PF17757 UvrB interaction domain CJO90_RS12045 PF12344 Ultra-violet resistance protein B CJO90_RS12045 PF04851 Type III restriction enzyme, res subunit CJO90_RS12045 PF00271 Helicase conserved C-terminal domain CJO90_RS12045 PF02151 UvrB/uvrC motif CJO90_RS12050 PF00155 Aminotransferase class I and II CJO90_RS12060 PF17938 Tetracyclin repressor-like, C-terminal domain CJO90_RS12060 PF00440 Bacterial regulatory proteins, tetR family CJO90_RS12065 PF04060 Putative Fe-S cluster CJO90_RS12070 PF00730 HhH-GPD superfamily base excision DNA repair protein CJO90_RS12070 PF00633 Helix-hairpin-helix motif CJO90_RS12070 PF10576 Iron-sulfur binding domain of endonuclease III CJO90_RS12075 PF00881 Nitroreductase family CJO90_RS12080 PF01609 Transposase DDE domain CJO90_RS12080 PF05598 Transposase domain (DUF772) CJO90_RS12100 PF13006 Insertion element 4 transposase N-terminal CJO90_RS12100 PF01609 Transposase DDE domain CJO90_RS12105 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CJO90_RS12110 PF00034 Cytochrome c CJO90_RS12115 PF00004 ATPase family associated with various cellular activities (AAA) CJO90_RS12115 PF01434 Peptidase family M41 CJO90_RS12115 PF17862 AAA+ lid domain CJO90_RS12155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS12155 PF00183 Hsp90 protein CJO90_RS12160 PF00155 Aminotransferase class I and II CJO90_RS12165 PF02272 DHHA1 domain CJO90_RS12165 PF01411 tRNA synthetases class II (A) CJO90_RS12165 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CJO90_RS12170 PF00892 EamA-like transporter family CJO90_RS12180 PF00155 Aminotransferase class I and II CJO90_RS12185 PF00043 Glutathione S-transferase, C-terminal domain CJO90_RS12185 PF13417 Glutathione S-transferase, N-terminal domain CJO90_RS12200 PF02652 L-lactate permease CJO90_RS12215 PF00521 DNA gyrase/topoisomerase IV, subunit A CJO90_RS12220 PF01464 Transglycosylase SLT domain CJO90_RS12225 PF01751 Toprim domain CJO90_RS12225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS12225 PF00986 DNA gyrase B subunit, carboxyl terminus CJO90_RS12225 PF00204 DNA gyrase B CJO90_RS12230 PF00005 ABC transporter CJO90_RS12230 PF12848 ABC transporter CJO90_RS12230 PF16326 ABC transporter C-terminal domain CJO90_RS12240 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJO90_RS12270 PF00270 DEAD/DEAH box helicase CJO90_RS12270 PF00271 Helicase conserved C-terminal domain CJO90_RS12275 PF03781 Sulfatase-modifying factor enzyme 1 CJO90_RS12275 PF12867 DinB superfamily CJO90_RS12285 PF03741 Integral membrane protein TerC family CJO90_RS12290 PF00291 Pyridoxal-phosphate dependent enzyme CJO90_RS12295 PF00303 Thymidylate synthase CJO90_RS12300 PF00186 Dihydrofolate reductase CJO90_RS12305 PF01523 Putative modulator of DNA gyrase CJO90_RS12310 PF04751 Protein of unknown function (DUF615) CJO90_RS12315 PF00994 Probable molybdopterin binding domain CJO90_RS12320 PF00929 Exonuclease CJO90_RS12325 PF01435 Peptidase family M48 CJO90_RS12340 PF17113 Regulatory signalling modulator protein AmpE CJO90_RS12340 PF03186 CobD/Cbib protein CJO90_RS12345 PF00293 NUDIX domain CJO90_RS12355 PF01746 tRNA (Guanine-1)-methyltransferase CJO90_RS12360 PF05239 PRC-barrel domain CJO90_RS12360 PF01782 RimM N-terminal domain CJO90_RS12365 PF00886 Ribosomal protein S16 CJO90_RS12370 PF07995 Glucose / Sorbosone dehydrogenase CJO90_RS12390 PF04055 Radical SAM superfamily CJO90_RS12395 PF01037 Lrp/AsnC ligand binding domain CJO90_RS12400 PF01266 FAD dependent oxidoreductase CJO90_RS12405 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJO90_RS12405 PF12806 Acetyl-CoA dehydrogenase C-terminal like CJO90_RS12405 PF02770 Acyl-CoA dehydrogenase, middle domain CJO90_RS12405 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJO90_RS12410 PF01012 Electron transfer flavoprotein domain CJO90_RS12410 PF00766 Electron transfer flavoprotein FAD-binding domain CJO90_RS12415 PF01012 Electron transfer flavoprotein domain CJO90_RS12420 PF03180 NLPA lipoprotein CJO90_RS12425 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS12430 PF00005 ABC transporter CJO90_RS12430 PF09383 NIL domain CJO90_RS12435 PF00850 Histone deacetylase domain CJO90_RS12440 PF13406 Transglycosylase SLT domain CJO90_RS12445 PF01609 Transposase DDE domain CJO90_RS12445 PF13006 Insertion element 4 transposase N-terminal CJO90_RS12450 PF00291 Pyridoxal-phosphate dependent enzyme CJO90_RS12460 PF01370 NAD dependent epimerase/dehydratase family CJO90_RS12465 PF00294 pfkB family carbohydrate kinase CJO90_RS12470 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CJO90_RS12470 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CJO90_RS12470 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CJO90_RS12475 PF18073 Rubredoxin metal binding domain CJO90_RS12485 PF00216 Bacterial DNA-binding protein CJO90_RS12490 PF00575 S1 RNA binding domain CJO90_RS12495 PF02224 Cytidylate kinase CJO90_RS12500 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CJO90_RS12510 PF00155 Aminotransferase class I and II CJO90_RS12515 PF01842 ACT domain CJO90_RS12515 PF00800 Prephenate dehydratase CJO90_RS12515 PF01817 Chorismate mutase type II CJO90_RS12520 PF00266 Aminotransferase class-V CJO90_RS12530 PF00521 DNA gyrase/topoisomerase IV, subunit A CJO90_RS12530 PF03989 DNA gyrase C-terminal domain, beta-propeller CJO90_RS12535 PF00691 OmpA family CJO90_RS12550 PF13419 Haloacid dehalogenase-like hydrolase CJO90_RS12570 PF00239 Resolvase, N terminal domain CJO90_RS12570 PF02796 Helix-turn-helix domain of resolvase CJO90_RS12590 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CJO90_RS12590 PF08479 POTRA domain, ShlB-type CJO90_RS12590 PF17287 POTRA domain CJO90_RS12600 PF13018 Extended Signal Peptide of Type V secretion system CJO90_RS12600 PF05594 Haemagluttinin repeat CJO90_RS12600 PF18451 Contact-dependent growth inhibition CdiA C-terminal domain CJO90_RS12600 PF13332 Hemagglutinin repeat CJO90_RS12600 PF05860 haemagglutination activity domain CJO90_RS12605 PF05598 Transposase domain (DUF772) CJO90_RS12605 PF01609 Transposase DDE domain CJO90_RS12685 PF01609 Transposase DDE domain CJO90_RS12685 PF05598 Transposase domain (DUF772) CJO90_RS12800 PF01555 DNA methylase CJO90_RS12800 PF18755 Restriction Enzyme Adenine Methylase Associated CJO90_RS12805 PF01555 DNA methylase CJO90_RS12855 PF00440 Bacterial regulatory proteins, tetR family CJO90_RS12865 PF08240 Alcohol dehydrogenase GroES-like domain CJO90_RS12865 PF00107 Zinc-binding dehydrogenase CJO90_RS12880 PF03421 YopJ Serine/Threonine acetyltransferase CJO90_RS12900 PF00881 Nitroreductase family CJO90_RS12915 PF03330 Lytic transglycolase CJO90_RS12920 PF02798 Glutathione S-transferase, N-terminal domain CJO90_RS12920 PF00043 Glutathione S-transferase, C-terminal domain CJO90_RS12940 PF01810 LysE type translocator CJO90_RS12955 PF01206 Sulfurtransferase TusA CJO90_RS12960 PF00293 NUDIX domain CJO90_RS12960 PF13344 Haloacid dehalogenase-like hydrolase CJO90_RS12965 PF01212 Beta-eliminating lyase CJO90_RS12970 PF01361 Tautomerase enzyme CJO90_RS12975 PF00596 Class II Aldolase and Adducin N-terminal domain CJO90_RS12980 PF06779 Uncharacterised MFS-type transporter YbfB CJO90_RS12985 PF03466 LysR substrate binding domain CJO90_RS12985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS12995 PF01145 SPFH domain / Band 7 family CJO90_RS13005 PF07715 TonB-dependent Receptor Plug Domain CJO90_RS13005 PF00593 TonB dependent receptor CJO90_RS13020 PF02272 DHHA1 domain CJO90_RS13020 PF01411 tRNA synthetases class II (A) CJO90_RS13020 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CJO90_RS13025 PF02515 CoA-transferase family III CJO90_RS13035 PF07331 Tripartite tricarboxylate transporter TctB family CJO90_RS13040 PF01970 Tripartite tricarboxylate transporter TctA family CJO90_RS13050 PF00749 tRNA synthetases class I (E and Q), catalytic domain CJO90_RS13050 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CJO90_RS13080 PF07152 YaeQ protein CJO90_RS13085 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CJO90_RS13095 PF04752 ChaC-like protein CJO90_RS13105 PF00501 AMP-binding enzyme CJO90_RS13105 PF13193 AMP-binding enzyme C-terminal domain CJO90_RS13110 PF00085 Thioredoxin CJO90_RS13120 PF01814 Hemerythrin HHE cation binding domain CJO90_RS13125 PF00141 Peroxidase CJO90_RS13130 PF00899 ThiF family CJO90_RS13135 PF05170 AsmA family CJO90_RS13140 PF00034 Cytochrome c CJO90_RS13140 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CJO90_RS13145 PF00732 GMC oxidoreductase CJO90_RS13145 PF05199 GMC oxidoreductase CJO90_RS13155 PF00933 Glycosyl hydrolase family 3 N terminal domain CJO90_RS13160 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CJO90_RS13160 PF01243 Pyridoxamine 5'-phosphate oxidase CJO90_RS13175 PF01625 Peptide methionine sulfoxide reductase CJO90_RS13180 PF01613 Flavin reductase like domain CJO90_RS13190 PF01037 Lrp/AsnC ligand binding domain CJO90_RS13195 PF04199 Putative cyclase CJO90_RS13200 PF00266 Aminotransferase class-V CJO90_RS13205 PF03301 Tryptophan 2,3-dioxygenase CJO90_RS13215 PF02770 Acyl-CoA dehydrogenase, middle domain CJO90_RS13215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJO90_RS13215 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJO90_RS13220 PF00860 Permease family CJO90_RS13225 PF10417 C-terminal domain of 1-Cys peroxiredoxin CJO90_RS13225 PF00578 AhpC/TSA family CJO90_RS13230 PF05957 Bacterial protein of unknown function (DUF883) CJO90_RS13250 PF00005 ABC transporter CJO90_RS13255 PF03649 Uncharacterised protein family (UPF0014) CJO90_RS13260 PF00293 NUDIX domain CJO90_RS13280 PF00793 DAHP synthetase I family CJO90_RS13285 PF04344 Chemotaxis phosphatase, CheZ CJO90_RS13290 PF00072 Response regulator receiver domain CJO90_RS13300 PF13006 Insertion element 4 transposase N-terminal CJO90_RS13300 PF01609 Transposase DDE domain CJO90_RS13310 PF04143 Sulphur transport CJO90_RS13315 PF06508 Queuosine biosynthesis protein QueC CJO90_RS13325 PF00691 OmpA family CJO90_RS13330 PF07676 WD40-like Beta Propeller Repeat CJO90_RS13330 PF04052 TolB amino-terminal domain CJO90_RS13340 PF02472 Biopolymer transport protein ExbD/TolR CJO90_RS13345 PF01618 MotA/TolQ/ExbB proton channel family CJO90_RS13350 PF03061 Thioesterase superfamily CJO90_RS13355 PF00106 short chain dehydrogenase CJO90_RS13360 PF00464 Serine hydroxymethyltransferase CJO90_RS13365 PF03477 ATP cone domain CJO90_RS13385 PF05567 Neisseria PilC beta-propeller domain CJO90_RS13415 PF05567 Neisseria PilC beta-propeller domain CJO90_RS13430 PF01872 RibD C-terminal domain CJO90_RS13430 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CJO90_RS13435 PF00677 Lumazine binding domain CJO90_RS13440 PF00925 GTP cyclohydrolase II CJO90_RS13440 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CJO90_RS13445 PF00885 6,7-dimethyl-8-ribityllumazine synthase CJO90_RS13450 PF01029 NusB family CJO90_RS13455 PF00155 Aminotransferase class I and II CJO90_RS13460 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CJO90_RS13460 PF01464 Transglycosylase SLT domain CJO90_RS13465 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CJO90_RS13495 PF02390 Putative methyltransferase CJO90_RS13500 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CJO90_RS13505 PF02673 Bacitracin resistance protein BacA CJO90_RS13515 PF03692 Putative zinc- or iron-chelating domain CJO90_RS13525 PF00440 Bacterial regulatory proteins, tetR family CJO90_RS13525 PF08361 MAATS-type transcriptional repressor, C-terminal region CJO90_RS13535 PF01206 Sulfurtransferase TusA CJO90_RS13535 PF00581 Rhodanese-like domain CJO90_RS13550 PF00534 Glycosyl transferases group 1 CJO90_RS13550 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CJO90_RS13555 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CJO90_RS13560 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CJO90_RS13560 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CJO90_RS13560 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CJO90_RS13560 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CJO90_RS13570 PF00953 Glycosyl transferase family 4 CJO90_RS13570 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CJO90_RS13590 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CJO90_RS13595 PF00483 Nucleotidyl transferase CJO90_RS13600 PF04321 RmlD substrate binding domain CJO90_RS13605 PF16363 GDP-mannose 4,6 dehydratase CJO90_RS13610 PF00149 Calcineurin-like phosphoesterase CJO90_RS13615 PF01553 Acyltransferase CJO90_RS13620 PF01979 Amidohydrolase family CJO90_RS13625 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CJO90_RS13625 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CJO90_RS13630 PF00156 Phosphoribosyl transferase domain CJO90_RS13635 PF03652 Holliday junction resolvase CJO90_RS13640 PF02622 Uncharacterized ACR, COG1678 CJO90_RS13645 PF01479 S4 domain CJO90_RS13645 PF00849 RNA pseudouridylate synthase CJO90_RS13660 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CJO90_RS13660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO90_RS13670 PF00072 Response regulator receiver domain CJO90_RS13675 PF00072 Response regulator receiver domain CJO90_RS13680 PF00301 Rubredoxin CJO90_RS13685 PF00202 Aminotransferase class-III CJO90_RS13690 PF00701 Dihydrodipicolinate synthetase family CJO90_RS13700 PF04011 LemA family CJO90_RS13745 PF04972 BON domain CJO90_RS13745 PF00263 Bacterial type II and III secretion system protein CJO90_RS13745 PF13629 Pilus formation protein N terminal region CJO90_RS13760 PF00437 Type II/IV secretion system protein CJO90_RS13810 PF05987 Bacterial protein of unknown function (DUF898) CJO90_RS13815 PF00118 TCP-1/cpn60 chaperonin family CJO90_RS13820 PF00166 Chaperonin 10 Kd subunit CJO90_RS13840 PF00174 Oxidoreductase molybdopterin binding domain CJO90_RS13845 PF01292 Prokaryotic cytochrome b561 CJO90_RS13850 PF13737 Transposase DDE domain CJO90_RS13855 PF04381 Putative exonuclease, RdgC CJO90_RS13860 PF13737 Transposase DDE domain CJO90_RS13880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS13880 PF03466 LysR substrate binding domain CJO90_RS13885 PF00892 EamA-like transporter family CJO90_RS13925 PF00672 HAMP domain CJO90_RS13925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO90_RS13925 PF02203 Tar ligand binding domain homologue CJO90_RS13930 PF00107 Zinc-binding dehydrogenase CJO90_RS13930 PF08240 Alcohol dehydrogenase GroES-like domain CJO90_RS13935 PF00756 Putative esterase CJO90_RS13950 PF04403 Paraquat-inducible protein A CJO90_RS13955 PF02470 MlaD protein CJO90_RS13965 PF00392 Bacterial regulatory proteins, gntR family CJO90_RS13965 PF00155 Aminotransferase class I and II CJO90_RS13995 PF11871 Domain of unknown function (DUF3391) CJO90_RS13995 PF01966 HD domain CJO90_RS14010 PF01425 Amidase CJO90_RS14015 PF00990 Diguanylate cyclase, GGDEF domain CJO90_RS14015 PF03707 Bacterial signalling protein N terminal repeat CJO90_RS14015 PF00563 EAL domain CJO90_RS14030 PF07690 Major Facilitator Superfamily CJO90_RS14035 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CJO90_RS14040 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CJO90_RS14050 PF13737 Transposase DDE domain CJO90_RS14060 PF13419 Haloacid dehalogenase-like hydrolase CJO90_RS14070 PF01300 Telomere recombination CJO90_RS14070 PF03481 Putative GTP-binding controlling metal-binding CJO90_RS14075 PF02222 ATP-grasp domain CJO90_RS14075 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CJO90_RS14080 PF00731 AIR carboxylase CJO90_RS14085 PF01259 SAICAR synthetase CJO90_RS14090 PF01116 Fructose-bisphosphate aldolase class-II CJO90_RS14095 PF02887 Pyruvate kinase, alpha/beta domain CJO90_RS14095 PF00224 Pyruvate kinase, barrel domain CJO90_RS14100 PF00162 Phosphoglycerate kinase CJO90_RS14105 PF00892 EamA-like transporter family CJO90_RS14120 PF01063 Amino-transferase class IV CJO90_RS14130 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CJO90_RS14140 PF00561 alpha/beta hydrolase fold CJO90_RS14150 PF13181 Tetratricopeptide repeat CJO90_RS14150 PF01435 Peptidase family M48 CJO90_RS14155 PF01967 MoaC family CJO90_RS14165 PF07963 Prokaryotic N-terminal methylation motif CJO90_RS14165 PF00114 Pilin (bacterial filament) CJO90_RS14175 PF03741 Integral membrane protein TerC family CJO90_RS14180 PF02629 CoA binding domain CJO90_RS14180 PF00549 CoA-ligase CJO90_RS14185 PF00549 CoA-ligase CJO90_RS14185 PF08442 ATP-grasp domain CJO90_RS14195 PF02631 RecX family CJO90_RS14200 PF00154 recA bacterial DNA recombination protein CJO90_RS14205 PF00486 Transcriptional regulatory protein, C terminal CJO90_RS14205 PF00072 Response regulator receiver domain CJO90_RS14210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS14210 PF00512 His Kinase A (phospho-acceptor) domain CJO90_RS14210 PF08521 Two-component sensor kinase N-terminal CJO90_RS14220 PF00083 Sugar (and other) transporter CJO90_RS14220 PF08946 Osmosensory transporter coiled coil CJO90_RS14240 PF02384 N-6 DNA Methylase CJO90_RS14250 PF01381 Helix-turn-helix CJO90_RS14290 PF03432 Relaxase/Mobilisation nuclease domain CJO90_RS14300 PF01494 FAD binding domain CJO90_RS14310 PF00072 Response regulator receiver domain CJO90_RS14310 PF00486 Transcriptional regulatory protein, C terminal CJO90_RS14315 PF03466 LysR substrate binding domain CJO90_RS14315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS14320 PF02678 Pirin CJO90_RS14320 PF05726 Pirin C-terminal cupin domain CJO90_RS14325 PF01636 Phosphotransferase enzyme family CJO90_RS14330 PF00271 Helicase conserved C-terminal domain CJO90_RS14330 PF00270 DEAD/DEAH box helicase CJO90_RS14340 PF00440 Bacterial regulatory proteins, tetR family CJO90_RS14345 PF09317 Domain of unknown function (DUF1974) CJO90_RS14345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJO90_RS14345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJO90_RS14345 PF02770 Acyl-CoA dehydrogenase, middle domain CJO90_RS14360 PF13193 AMP-binding enzyme C-terminal domain CJO90_RS14360 PF00501 AMP-binding enzyme CJO90_RS14385 PF04055 Radical SAM superfamily CJO90_RS14385 PF01938 TRAM domain CJO90_RS14385 PF00919 Uncharacterized protein family UPF0004 CJO90_RS14390 PF02562 PhoH-like protein CJO90_RS14395 PF02130 Uncharacterized protein family UPF0054 CJO90_RS14400 PF03471 Transporter associated domain CJO90_RS14400 PF00571 CBS domain CJO90_RS14410 PF02091 Glycyl-tRNA synthetase alpha subunit CJO90_RS14420 PF05746 DALR anticodon binding domain CJO90_RS14420 PF02092 Glycyl-tRNA synthetase beta subunit CJO90_RS14430 PF01553 Acyltransferase CJO90_RS14445 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CJO90_RS14450 PF00892 EamA-like transporter family CJO90_RS14455 PF00398 Ribosomal RNA adenine dimethylase CJO90_RS14460 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CJO90_RS14465 PF09312 SurA N-terminal domain CJO90_RS14470 PF04453 LPS transport system D CJO90_RS14475 PF01636 Phosphotransferase enzyme family CJO90_RS14490 PF00483 Nucleotidyl transferase CJO90_RS14495 PF03707 Bacterial signalling protein N terminal repeat CJO90_RS14495 PF00563 EAL domain CJO90_RS14495 PF00990 Diguanylate cyclase, GGDEF domain CJO90_RS14500 PF00557 Metallopeptidase family M24 CJO90_RS14500 PF05195 Aminopeptidase P, N-terminal domain CJO90_RS14505 PF01494 FAD binding domain CJO90_RS14510 PF01266 FAD dependent oxidoreductase CJO90_RS14515 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system CJO90_RS14525 PF01207 Dihydrouridine synthase (Dus) CJO90_RS14530 PF02954 Bacterial regulatory protein, Fis family CJO90_RS14535 PF02142 MGS-like domain CJO90_RS14535 PF01808 AICARFT/IMPCHase bienzyme CJO90_RS14540 PF02075 Crossover junction endodeoxyribonuclease RuvC CJO90_RS14550 PF01330 RuvA N terminal domain CJO90_RS14550 PF07499 RuvA, C-terminal domain CJO90_RS14555 PF05496 Holliday junction DNA helicase RuvB P-loop domain CJO90_RS14555 PF05491 RuvB C-terminal winged helix domain CJO90_RS14555 PF17864 RuvB AAA lid domain CJO90_RS14560 PF00300 Histidine phosphatase superfamily (branch 1) CJO90_RS14570 PF02580 D-Tyr-tRNA(Tyr) deacylase CJO90_RS14575 PF01479 S4 domain CJO90_RS14575 PF00579 tRNA synthetases class I (W and Y) CJO90_RS14580 PF03702 Anhydro-N-acetylmuramic acid kinase CJO90_RS14585 PF01521 Iron-sulphur cluster biosynthesis CJO90_RS14600 PF00380 Ribosomal protein S9/S16 CJO90_RS14605 PF00572 Ribosomal protein L13 CJO90_RS14625 PF01979 Amidohydrolase family CJO90_RS14630 PF05161 MOFRL family CJO90_RS14630 PF13660 Domain of unknown function (DUF4147) CJO90_RS14635 PF00180 Isocitrate/isopropylmalate dehydrogenase CJO90_RS14640 PF13230 Glutamine amidotransferases class-II CJO90_RS14645 PF00005 ABC transporter CJO90_RS14650 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS14655 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS14660 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJO90_RS14665 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CJO90_RS14665 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CJO90_RS14680 PF03061 Thioesterase superfamily CJO90_RS14685 PF00378 Enoyl-CoA hydratase/isomerase CJO90_RS14690 PF02803 Thiolase, C-terminal domain CJO90_RS14690 PF00108 Thiolase, N-terminal domain CJO90_RS14695 PF00378 Enoyl-CoA hydratase/isomerase CJO90_RS14695 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CJO90_RS14695 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CJO90_RS14700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJO90_RS14700 PF12806 Acetyl-CoA dehydrogenase C-terminal like CJO90_RS14700 PF02770 Acyl-CoA dehydrogenase, middle domain CJO90_RS14700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJO90_RS14710 PF01144 Coenzyme A transferase CJO90_RS14715 PF13091 PLD-like domain CJO90_RS14720 PF03372 Endonuclease/Exonuclease/phosphatase family CJO90_RS14725 PF00293 NUDIX domain CJO90_RS14735 PF01336 OB-fold nucleic acid binding domain CJO90_RS14735 PF02938 GAD domain CJO90_RS14735 PF00152 tRNA synthetases class II (D, K and N) CJO90_RS14755 PF05724 Thiopurine S-methyltransferase (TPMT) CJO90_RS14760 PF03109 ABC1 family CJO90_RS14775 PF01209 ubiE/COQ5 methyltransferase family CJO90_RS14785 PF06472 ABC transporter transmembrane region 2 CJO90_RS14785 PF00005 ABC transporter CJO90_RS14800 PF09335 SNARE associated Golgi protein CJO90_RS14805 PF07670 Nucleoside recognition CJO90_RS14815 PF07885 Ion channel CJO90_RS14815 PF17655 Inward rectifier potassium channel C-terminal domain CJO90_RS14820 PF00585 C-terminal regulatory domain of Threonine dehydratase CJO90_RS14820 PF00291 Pyridoxal-phosphate dependent enzyme CJO90_RS14825 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CJO90_RS14825 PF14489 QueF-like protein CJO90_RS14855 PF00501 AMP-binding enzyme CJO90_RS14855 PF13193 AMP-binding enzyme C-terminal domain CJO90_RS14860 PF01202 Shikimate kinase CJO90_RS14870 PF07859 alpha/beta hydrolase fold CJO90_RS14875 PF04143 Sulphur transport CJO90_RS14905 PF07977 FabA-like domain CJO90_RS14925 PF01522 Polysaccharide deacetylase CJO90_RS14930 PF00109 Beta-ketoacyl synthase, N-terminal domain CJO90_RS14930 PF02801 Beta-ketoacyl synthase, C-terminal domain CJO90_RS14955 PF01527 Transposase CJO90_RS14960 PF00436 Single-strand binding protein family CJO90_RS14965 PF07690 Major Facilitator Superfamily CJO90_RS14970 PF17760 UvrA interaction domain CJO90_RS14970 PF17755 UvrA DNA-binding domain CJO90_RS14980 PF01810 LysE type translocator CJO90_RS14985 PF00156 Phosphoribosyl transferase domain CJO90_RS14990 PF01965 DJ-1/PfpI family CJO90_RS15000 PF02080 TrkA-C domain CJO90_RS15000 PF00999 Sodium/hydrogen exchanger family CJO90_RS15000 PF02254 TrkA-N domain CJO90_RS15010 PF00571 CBS domain CJO90_RS15010 PF01380 SIS domain CJO90_RS15030 PF00005 ABC transporter CJO90_RS15035 PF00309 Sigma-54 factor, Activator interacting domain (AID) CJO90_RS15035 PF04552 Sigma-54, DNA binding domain CJO90_RS15035 PF04963 Sigma-54 factor, core binding domain CJO90_RS15040 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CJO90_RS15045 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CJO90_RS15050 PF02603 HPr Serine kinase N terminus CJO90_RS15050 PF07475 HPr Serine kinase C-terminal domain CJO90_RS15060 PF03668 P-loop ATPase protein family CJO90_RS15070 PF14815 NUDIX domain CJO90_RS15070 PF00730 HhH-GPD superfamily base excision DNA repair protein CJO90_RS15070 PF00633 Helix-hairpin-helix motif CJO90_RS15070 PF10576 Iron-sulfur binding domain of endonuclease III CJO90_RS15080 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CJO90_RS15080 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CJO90_RS15080 PF06827 Zinc finger found in FPG and IleRS CJO90_RS15090 PF03550 Outer membrane lipoprotein LolB CJO90_RS15095 PF08544 GHMP kinases C terminal CJO90_RS15095 PF00288 GHMP kinases N terminal domain CJO90_RS15105 PF14572 Phosphoribosyl synthetase-associated domain CJO90_RS15105 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CJO90_RS15110 PF01386 Ribosomal L25p family CJO90_RS15110 PF14693 Ribosomal protein TL5, C-terminal domain CJO90_RS15115 PF01195 Peptidyl-tRNA hydrolase CJO90_RS15125 PF00037 4Fe-4S binding domain CJO90_RS15130 PF01467 Cytidylyltransferase-like CJO90_RS15140 PF05193 Peptidase M16 inactive domain CJO90_RS15145 PF00675 Insulinase (Peptidase family M16) CJO90_RS15145 PF05193 Peptidase M16 inactive domain CJO90_RS15150 PF02881 SRP54-type protein, helical bundle domain CJO90_RS15150 PF00448 SRP54-type protein, GTPase domain CJO90_RS15155 PF01810 LysE type translocator CJO90_RS15160 PF02798 Glutathione S-transferase, N-terminal domain CJO90_RS15160 PF14497 Glutathione S-transferase, C-terminal domain CJO90_RS15165 PF01557 Fumarylacetoacetate (FAA) hydrolase family CJO90_RS15170 PF03861 ANTAR domain CJO90_RS15170 PF08376 Nitrate and nitrite sensing CJO90_RS15185 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS15190 PF00005 ABC transporter CJO90_RS15200 PF02678 Pirin CJO90_RS15200 PF05726 Pirin C-terminal cupin domain CJO90_RS15210 PF00990 Diguanylate cyclase, GGDEF domain CJO90_RS15210 PF13188 PAS domain CJO90_RS15210 PF03707 Bacterial signalling protein N terminal repeat CJO90_RS15210 PF00563 EAL domain CJO90_RS15215 PF04545 Sigma-70, region 4 CJO90_RS15215 PF04542 Sigma-70 region 2 CJO90_RS15215 PF00140 Sigma-70 factor, region 1.2 CJO90_RS15220 PF02630 SCO1/SenC CJO90_RS15225 PF01040 UbiA prenyltransferase family CJO90_RS15230 PF02628 Cytochrome oxidase assembly protein CJO90_RS15250 PF00510 Cytochrome c oxidase subunit III CJO90_RS15260 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 CJO90_RS15270 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CJO90_RS15270 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CJO90_RS15280 PF08241 Methyltransferase domain CJO90_RS15285 PF00156 Phosphoribosyl transferase domain CJO90_RS15290 PF00588 SpoU rRNA Methylase family CJO90_RS15295 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CJO90_RS15295 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CJO90_RS15300 PF02556 Preprotein translocase subunit SecB CJO90_RS15305 PF00462 Glutaredoxin CJO90_RS15310 PF00581 Rhodanese-like domain CJO90_RS15315 PF00300 Histidine phosphatase superfamily (branch 1) CJO90_RS15320 PF13180 PDZ domain CJO90_RS15320 PF03572 Peptidase family S41 CJO90_RS15325 PF00899 ThiF family CJO90_RS15330 PF00210 Ferritin-like domain CJO90_RS15340 PF00391 PEP-utilising enzyme, mobile domain CJO90_RS15340 PF02896 PEP-utilising enzyme, TIM barrel domain CJO90_RS15340 PF05524 PEP-utilising enzyme, N-terminal CJO90_RS15345 PF00381 PTS HPr component phosphorylation site CJO90_RS15355 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CJO90_RS15355 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CJO90_RS15365 PF00909 Ammonium Transporter Family CJO90_RS15370 PF00543 Nitrogen regulatory protein P-II CJO90_RS15380 PF04380 Membrane fusogenic activity CJO90_RS15395 PF05598 Transposase domain (DUF772) CJO90_RS15395 PF01609 Transposase DDE domain CJO90_RS15435 PF01609 Transposase DDE domain CJO90_RS15435 PF05598 Transposase domain (DUF772) CJO90_RS15535 PF05598 Transposase domain (DUF772) CJO90_RS15535 PF01609 Transposase DDE domain CJO90_RS15545 PF00264 Common central domain of tyrosinase CJO90_RS15560 PF01661 Macro domain CJO90_RS15565 PF00578 AhpC/TSA family CJO90_RS15570 PF02954 Bacterial regulatory protein, Fis family CJO90_RS15570 PF00072 Response regulator receiver domain CJO90_RS15570 PF00158 Sigma-54 interaction domain CJO90_RS15575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS15575 PF00512 His Kinase A (phospho-acceptor) domain CJO90_RS15580 PF00375 Sodium:dicarboxylate symporter family CJO90_RS15595 PF00768 D-alanyl-D-alanine carboxypeptidase CJO90_RS15595 PF07943 Penicillin-binding protein 5, C-terminal domain CJO90_RS15600 PF04359 Protein of unknown function (DUF493) CJO90_RS15615 PF03099 Biotin/lipoate A/B protein ligase family CJO90_RS15620 PF04055 Radical SAM superfamily CJO90_RS15620 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CJO90_RS15660 PF00005 ABC transporter CJO90_RS15660 PF09383 NIL domain CJO90_RS15665 PF02405 Permease MlaE CJO90_RS15670 PF08279 HTH domain CJO90_RS15670 PF02237 Biotin protein ligase C terminal domain CJO90_RS15670 PF03099 Biotin/lipoate A/B protein ligase family CJO90_RS15685 PF01467 Cytidylyltransferase-like CJO90_RS15695 PF00255 Glutathione peroxidase CJO90_RS15710 PF00378 Enoyl-CoA hydratase/isomerase CJO90_RS15740 PF00561 alpha/beta hydrolase fold CJO90_RS15745 PF12091 Protein of unknown function (DUF3567) CJO90_RS15755 PF02574 Homocysteine S-methyltransferase CJO90_RS15755 PF02310 B12 binding domain CJO90_RS15755 PF02607 B12 binding domain CJO90_RS15755 PF00809 Pterin binding enzyme CJO90_RS15755 PF02965 Vitamin B12 dependent methionine synthase, activation domain CJO90_RS15760 PF02310 B12 binding domain CJO90_RS15760 PF02607 B12 binding domain CJO90_RS15760 PF02965 Vitamin B12 dependent methionine synthase, activation domain CJO90_RS15760 PF00809 Pterin binding enzyme CJO90_RS15760 PF02574 Homocysteine S-methyltransferase CJO90_RS15765 PF05598 Transposase domain (DUF772) CJO90_RS15765 PF01609 Transposase DDE domain CJO90_RS15775 PF00072 Response regulator receiver domain CJO90_RS15775 PF00196 Bacterial regulatory proteins, luxR family CJO90_RS15780 PF00072 Response regulator receiver domain CJO90_RS15780 PF04397 LytTr DNA-binding domain CJO90_RS15790 PF07730 Histidine kinase CJO90_RS15790 PF17200 Single Cache domain 2 CJO90_RS15800 PF05746 DALR anticodon binding domain CJO90_RS15800 PF03485 Arginyl tRNA synthetase N terminal domain CJO90_RS15800 PF00750 tRNA synthetases class I (R) CJO90_RS15810 PF13462 Thioredoxin CJO90_RS15815 PF00106 short chain dehydrogenase CJO90_RS15825 PF13737 Transposase DDE domain CJO90_RS15830 PF13296 Putative type VI secretion system Rhs element Vgr CJO90_RS15830 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) CJO90_RS15830 PF04717 Type VI secretion system, phage-baseplate injector CJO90_RS15860 PF03992 Antibiotic biosynthesis monooxygenase CJO90_RS15870 PF13411 MerR HTH family regulatory protein CJO90_RS15875 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJO90_RS15875 PF02770 Acyl-CoA dehydrogenase, middle domain CJO90_RS15875 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJO90_RS15880 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CJO90_RS15885 PF00484 Carbonic anhydrase CJO90_RS15890 PF02803 Thiolase, C-terminal domain CJO90_RS15890 PF00108 Thiolase, N-terminal domain CJO90_RS15900 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJO90_RS15900 PF02770 Acyl-CoA dehydrogenase, middle domain CJO90_RS15900 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJO90_RS15915 PF13419 Haloacid dehalogenase-like hydrolase CJO90_RS15925 PF01039 Carboxyl transferase domain CJO90_RS15935 PF00378 Enoyl-CoA hydratase/isomerase CJO90_RS15940 PF04055 Radical SAM superfamily CJO90_RS15940 PF06968 Biotin and Thiamin Synthesis associated domain CJO90_RS15945 PF00364 Biotin-requiring enzyme CJO90_RS15945 PF00289 Biotin carboxylase, N-terminal domain CJO90_RS15945 PF02785 Biotin carboxylase C-terminal domain CJO90_RS15945 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CJO90_RS15945 PF18140 Propionyl-coenzyme A carboxylase BT domain CJO90_RS15960 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CJO90_RS15965 PF00682 HMGL-like CJO90_RS15990 PF00561 alpha/beta hydrolase fold CJO90_RS16005 PF02567 Phenazine biosynthesis-like protein CJO90_RS16025 PF05598 Transposase domain (DUF772) CJO90_RS16025 PF01609 Transposase DDE domain CJO90_RS16035 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CJO90_RS16035 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CJO90_RS16040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS16040 PF03466 LysR substrate binding domain CJO90_RS16060 PF07969 Amidohydrolase family CJO90_RS16120 PF00155 Aminotransferase class I and II CJO90_RS16130 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain CJO90_RS16130 PF01137 RNA 3'-terminal phosphate cyclase CJO90_RS16135 PF10127 RNA repair pathway DNA polymerase beta family CJO90_RS16140 PF01139 tRNA-splicing ligase RtcB CJO90_RS16150 PF00158 Sigma-54 interaction domain CJO90_RS16150 PF06956 Regulator of RNA terminal phosphate cyclase CJO90_RS16165 PF00708 Acylphosphatase CJO90_RS16185 PF07690 Major Facilitator Superfamily CJO90_RS16195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS16195 PF03466 LysR substrate binding domain CJO90_RS16200 PF00117 Glutamine amidotransferase class-I CJO90_RS16200 PF00958 GMP synthase C terminal domain CJO90_RS16200 PF02540 NAD synthase CJO90_RS16215 PF01638 HxlR-like helix-turn-helix CJO90_RS16235 PF07690 Major Facilitator Superfamily CJO90_RS16245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS16245 PF03466 LysR substrate binding domain CJO90_RS16255 PF00591 Glycosyl transferase family, a/b domain CJO90_RS16255 PF02885 Glycosyl transferase family, helical bundle domain CJO90_RS16255 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CJO90_RS16265 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CJO90_RS16265 PF14572 Phosphoribosyl synthetase-associated domain CJO90_RS16270 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CJO90_RS16270 PF00753 Metallo-beta-lactamase superfamily CJO90_RS16270 PF10996 Beta-Casp domain CJO90_RS16275 PF00011 Hsp20/alpha crystallin family CJO90_RS16290 PF01292 Prokaryotic cytochrome b561 CJO90_RS16300 PF00034 Cytochrome c CJO90_RS16310 PF08471 Class II vitamin B12-dependent ribonucleotide reductase CJO90_RS16310 PF02867 Ribonucleotide reductase, barrel domain CJO90_RS16315 PF08240 Alcohol dehydrogenase GroES-like domain CJO90_RS16315 PF00107 Zinc-binding dehydrogenase CJO90_RS16325 PF00196 Bacterial regulatory proteins, luxR family CJO90_RS16325 PF00072 Response regulator receiver domain CJO90_RS16330 PF07730 Histidine kinase CJO90_RS16330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS16330 PF05231 MASE1 CJO90_RS16335 PF00027 Cyclic nucleotide-binding domain CJO90_RS16335 PF13545 Crp-like helix-turn-helix domain CJO90_RS16370 PF01609 Transposase DDE domain CJO90_RS16370 PF05598 Transposase domain (DUF772) CJO90_RS16375 PF00582 Universal stress protein family CJO90_RS16380 PF00571 CBS domain CJO90_RS16400 PF00582 Universal stress protein family CJO90_RS16410 PF01380 SIS domain CJO90_RS16415 PF00132 Bacterial transferase hexapeptide (six repeats) CJO90_RS16415 PF14602 Hexapeptide repeat of succinyl-transferase CJO90_RS16415 PF12804 MobA-like NTP transferase domain CJO90_RS16425 PF01171 PP-loop family CJO90_RS16430 PF08546 Ketopantoate reductase PanE/ApbA C terminal CJO90_RS16430 PF02558 Ketopantoate reductase PanE/ApbA CJO90_RS16435 PF01040 UbiA prenyltransferase family CJO90_RS16440 PF01565 FAD binding domain CJO90_RS16440 PF04030 D-arabinono-1,4-lactone oxidase CJO90_RS16445 PF00106 short chain dehydrogenase CJO90_RS16455 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family CJO90_RS16460 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CJO90_RS16460 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO90_RS16470 PF02321 Outer membrane efflux protein CJO90_RS16480 PF00005 ABC transporter CJO90_RS16495 PF00171 Aldehyde dehydrogenase family CJO90_RS16500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS16500 PF03466 LysR substrate binding domain CJO90_RS16505 PF00202 Aminotransferase class-III CJO90_RS16510 PF00491 Arginase family CJO90_RS16520 PF00106 short chain dehydrogenase CJO90_RS16530 PF07690 Major Facilitator Superfamily CJO90_RS16545 PF00892 EamA-like transporter family CJO90_RS16550 PF00881 Nitroreductase family CJO90_RS16570 PF02698 DUF218 domain CJO90_RS16580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS16580 PF03466 LysR substrate binding domain CJO90_RS16590 PF01118 Semialdehyde dehydrogenase, NAD binding domain CJO90_RS16595 PF05360 yiaA/B two helix domain CJO90_RS16600 PF03372 Endonuclease/Exonuclease/phosphatase family CJO90_RS16605 PF00156 Phosphoribosyl transferase domain CJO90_RS16610 PF03976 Polyphosphate kinase 2 (PPK2) CJO90_RS16615 PF01678 Diaminopimelate epimerase CJO90_RS16620 PF03279 Bacterial lipid A biosynthesis acyltransferase CJO90_RS16630 PF02773 S-adenosylmethionine synthetase, C-terminal domain CJO90_RS16630 PF02772 S-adenosylmethionine synthetase, central domain CJO90_RS16630 PF00438 S-adenosylmethionine synthetase, N-terminal domain CJO90_RS16650 PF00571 CBS domain CJO90_RS16660 PF01037 Lrp/AsnC ligand binding domain CJO90_RS16680 PF02371 Transposase IS116/IS110/IS902 family CJO90_RS16680 PF01548 Transposase CJO90_RS16695 PF05199 GMC oxidoreductase CJO90_RS16695 PF00732 GMC oxidoreductase CJO90_RS16700 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJO90_RS16705 PF02770 Acyl-CoA dehydrogenase, middle domain CJO90_RS16705 PF18158 Adaptive response protein AidB N-terminal domain CJO90_RS16705 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJO90_RS16740 PF03060 Nitronate monooxygenase CJO90_RS16745 PF13667 ThiC-associated domain CJO90_RS16745 PF01964 Radical SAM ThiC family CJO90_RS16750 PF01266 FAD dependent oxidoreductase CJO90_RS16760 PF05690 Thiazole biosynthesis protein ThiG CJO90_RS16765 PF02581 Thiamine monophosphate synthase CJO90_RS16770 PF06983 3-demethylubiquinone-9 3-methyltransferase CJO90_RS16810 PF08543 Phosphomethylpyrimidine kinase CJO90_RS16820 PF00245 Alkaline phosphatase CJO90_RS16825 PF00245 Alkaline phosphatase CJO90_RS16840 PF05221 S-adenosyl-L-homocysteine hydrolase CJO90_RS16840 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CJO90_RS16845 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV CJO90_RS16860 PF01812 5-formyltetrahydrofolate cyclo-ligase family CJO90_RS16865 PF01464 Transglycosylase SLT domain CJO90_RS16865 PF14718 Soluble lytic murein transglycosylase L domain CJO90_RS16875 PF00043 Glutathione S-transferase, C-terminal domain CJO90_RS16875 PF13417 Glutathione S-transferase, N-terminal domain CJO90_RS16880 PF12627 Probable RNA and SrmB- binding site of polymerase A CJO90_RS16880 PF01966 HD domain CJO90_RS16880 PF01743 Poly A polymerase head domain CJO90_RS16885 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJO90_RS16890 PF05853 beta-keto acid cleavage enzyme CJO90_RS16895 PF00202 Aminotransferase class-III CJO90_RS16920 PF02954 Bacterial regulatory protein, Fis family CJO90_RS16920 PF00158 Sigma-54 interaction domain CJO90_RS16920 PF00072 Response regulator receiver domain CJO90_RS16925 PF00672 HAMP domain CJO90_RS16925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS16925 PF00512 His Kinase A (phospho-acceptor) domain CJO90_RS16925 PF00989 PAS fold CJO90_RS16935 PF01029 NusB family CJO90_RS16935 PF01189 16S rRNA methyltransferase RsmB/F CJO90_RS16940 PF01435 Peptidase family M48 CJO90_RS16945 PF01810 LysE type translocator CJO90_RS16950 PF02911 Formyl transferase, C-terminal domain CJO90_RS16950 PF00551 Formyl transferase CJO90_RS16960 PF01327 Polypeptide deformylase CJO90_RS16965 PF01476 LysM domain CJO90_RS16970 PF17782 DprA winged helix domain CJO90_RS16970 PF02481 DNA recombination-mediator protein A CJO90_RS16980 PF01751 Toprim domain CJO90_RS16980 PF01131 DNA topoisomerase CJO90_RS16985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS16985 PF03466 LysR substrate binding domain CJO90_RS16990 PF13193 AMP-binding enzyme C-terminal domain CJO90_RS16990 PF00501 AMP-binding enzyme CJO90_RS16995 PF01098 Cell cycle protein CJO90_RS17000 PF00905 Penicillin binding protein transpeptidase domain CJO90_RS17000 PF03717 Penicillin-binding Protein dimerisation domain CJO90_RS17010 PF04085 rod shape-determining protein MreC CJO90_RS17020 PF02686 Glu-tRNAGln amidotransferase C subunit CJO90_RS17025 PF01425 Amidase CJO90_RS17040 PF02637 GatB domain CJO90_RS17040 PF02934 GatB/GatE catalytic domain CJO90_RS17050 PF02899 Phage integrase, N-terminal SAM-like domain CJO90_RS17050 PF00589 Phage integrase family CJO90_RS17055 PF10672 S-adenosylmethionine-dependent methyltransferase CJO90_RS17055 PF17785 PUA-like domain CJO90_RS17075 PF02492 CobW/HypB/UreG, nucleotide-binding domain CJO90_RS17075 PF07683 Cobalamin synthesis protein cobW C-terminal domain CJO90_RS17080 PF01258 Prokaryotic dksA/traR C4-type zinc finger CJO90_RS17085 PF07683 Cobalamin synthesis protein cobW C-terminal domain CJO90_RS17085 PF02492 CobW/HypB/UreG, nucleotide-binding domain CJO90_RS17090 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CJO90_RS17095 PF00227 Proteasome subunit CJO90_RS17100 PF00004 ATPase family associated with various cellular activities (AAA) CJO90_RS17100 PF10431 C-terminal, D2-small domain, of ClpB protein CJO90_RS17100 PF07724 AAA domain (Cdc48 subfamily) CJO90_RS17110 PF00072 Response regulator receiver domain CJO90_RS17115 PF00512 His Kinase A (phospho-acceptor) domain CJO90_RS17115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS17140 PF08281 Sigma-70, region 4 CJO90_RS17140 PF04542 Sigma-70 region 2 CJO90_RS17145 PF00696 Amino acid kinase family CJO90_RS17155 PF00440 Bacterial regulatory proteins, tetR family CJO90_RS17160 PF13006 Insertion element 4 transposase N-terminal CJO90_RS17160 PF01609 Transposase DDE domain CJO90_RS17165 PF00392 Bacterial regulatory proteins, gntR family CJO90_RS17165 PF00155 Aminotransferase class I and II CJO90_RS17170 PF00202 Aminotransferase class-III CJO90_RS17175 PF00171 Aldehyde dehydrogenase family CJO90_RS17180 PF00561 alpha/beta hydrolase fold CJO90_RS17200 PF04328 Selenoprotein, putative CJO90_RS17205 PF02554 Carbon starvation protein CstA CJO90_RS17205 PF13722 5TM C-terminal transporter carbon starvation CstA CJO90_RS17210 PF17200 Single Cache domain 2 CJO90_RS17210 PF07730 Histidine kinase CJO90_RS17215 PF00072 Response regulator receiver domain CJO90_RS17215 PF00196 Bacterial regulatory proteins, luxR family CJO90_RS17220 PF01261 Xylose isomerase-like TIM barrel CJO90_RS17230 PF00072 Response regulator receiver domain CJO90_RS17230 PF00486 Transcriptional regulatory protein, C terminal CJO90_RS17235 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain CJO90_RS17235 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain CJO90_RS17245 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CJO90_RS17245 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CJO90_RS17250 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CJO90_RS17255 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CJO90_RS17255 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO90_RS17265 PF08361 MAATS-type transcriptional repressor, C-terminal region CJO90_RS17265 PF00440 Bacterial regulatory proteins, tetR family CJO90_RS17270 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJO90_RS17270 PF00529 HlyD membrane-fusion protein of T1SS CJO90_RS17275 PF00873 AcrB/AcrD/AcrF family CJO90_RS17280 PF02321 Outer membrane efflux protein CJO90_RS17285 PF01165 Ribosomal protein S21 CJO90_RS17300 PF01926 50S ribosome-binding GTPase CJO90_RS17300 PF10396 GTP-binding protein TrmE N-terminus CJO90_RS17300 PF12631 MnmE helical domain CJO90_RS17305 PF02096 60Kd inner membrane protein CJO90_RS17305 PF14849 YidC periplasmic domain CJO90_RS17310 PF01809 Putative membrane protein insertion efficiency factor CJO90_RS17315 PF00825 Ribonuclease P CJO90_RS17320 PF00468 Ribosomal protein L34 CJO90_RS17330 PF13006 Insertion element 4 transposase N-terminal CJO90_RS17330 PF01609 Transposase DDE domain CJO90_RS17335 PF00313 'Cold-shock' DNA-binding domain CJO90_RS17340 PF13614 AAA domain CJO90_RS17345 PF17762 HTH domain found in ParB protein CJO90_RS17345 PF02195 ParB-like nuclease domain CJO90_RS17355 PF00483 Nucleotidyl transferase CJO90_RS17360 PF00083 Sugar (and other) transporter CJO90_RS17365 PF02743 Cache domain CJO90_RS17365 PF00512 His Kinase A (phospho-acceptor) domain CJO90_RS17365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS17370 PF02954 Bacterial regulatory protein, Fis family CJO90_RS17370 PF00072 Response regulator receiver domain CJO90_RS17370 PF00158 Sigma-54 interaction domain CJO90_RS17375 PF10086 YhfC intramembrane metalloprotease CJO90_RS17385 PF08447 PAS fold CJO90_RS17385 PF00990 Diguanylate cyclase, GGDEF domain CJO90_RS17385 PF05231 MASE1 CJO90_RS17385 PF00563 EAL domain CJO90_RS17385 PF08448 PAS fold CJO90_RS17385 PF13426 PAS domain CJO90_RS17390 PF13458 Periplasmic binding protein CJO90_RS17395 PF02653 Branched-chain amino acid transport system / permease component CJO90_RS17400 PF02653 Branched-chain amino acid transport system / permease component CJO90_RS17400 PF11862 Domain of unknown function (DUF3382) CJO90_RS17405 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJO90_RS17405 PF00005 ABC transporter CJO90_RS17410 PF00005 ABC transporter CJO90_RS17415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS17415 PF03466 LysR substrate binding domain CJO90_RS17425 PF00654 Voltage gated chloride channel CJO90_RS17440 PF01161 Phosphatidylethanolamine-binding protein CJO90_RS17470 PF00816 H-NS histone family CJO90_RS17475 PF05598 Transposase domain (DUF772) CJO90_RS17475 PF01609 Transposase DDE domain CJO90_RS17485 PF00905 Penicillin binding protein transpeptidase domain CJO90_RS17495 PF01494 FAD binding domain CJO90_RS17500 PF00106 short chain dehydrogenase CJO90_RS17510 PF00378 Enoyl-CoA hydratase/isomerase CJO90_RS17515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJO90_RS17515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJO90_RS17515 PF02770 Acyl-CoA dehydrogenase, middle domain CJO90_RS17520 PF13193 AMP-binding enzyme C-terminal domain CJO90_RS17520 PF00501 AMP-binding enzyme CJO90_RS17555 PF05598 Transposase domain (DUF772) CJO90_RS17555 PF01609 Transposase DDE domain CJO90_RS17575 PF01609 Transposase DDE domain CJO90_RS17575 PF05598 Transposase domain (DUF772) CJO90_RS17590 PF00083 Sugar (and other) transporter CJO90_RS17595 PF01381 Helix-turn-helix CJO90_RS17600 PF05973 Phage derived protein Gp49-like (DUF891) CJO90_RS17605 PF07690 Major Facilitator Superfamily CJO90_RS17615 PF01638 HxlR-like helix-turn-helix CJO90_RS17635 PF00593 TonB dependent receptor CJO90_RS17635 PF07715 TonB-dependent Receptor Plug Domain CJO90_RS17660 PF07726 ATPase family associated with various cellular activities (AAA) CJO90_RS17660 PF17863 AAA lid domain CJO90_RS17670 PF13559 Domain of unknown function (DUF4129) CJO90_RS17670 PF11992 Domain of unknown function (DUF3488) CJO90_RS17670 PF01841 Transglutaminase-like superfamily CJO90_RS17675 PF00484 Carbonic anhydrase CJO90_RS17680 PF01740 STAS domain CJO90_RS17680 PF00916 Sulfate permease family CJO90_RS17710 PF04303 PrpF protein CJO90_RS17715 PF00330 Aconitase family (aconitate hydratase) CJO90_RS17715 PF00694 Aconitase C-terminal domain CJO90_RS17720 PF00285 Citrate synthase, C-terminal domain CJO90_RS17735 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system CJO90_RS17740 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA CJO90_RS17755 PF01609 Transposase DDE domain CJO90_RS17755 PF05598 Transposase domain (DUF772) CJO90_RS17765 PF00580 UvrD/REP helicase N-terminal domain CJO90_RS17765 PF13361 UvrD-like helicase C-terminal domain CJO90_RS17785 PF01609 Transposase DDE domain CJO90_RS17785 PF05598 Transposase domain (DUF772) CJO90_RS17790 PF00072 Response regulator receiver domain CJO90_RS17790 PF00990 Diguanylate cyclase, GGDEF domain CJO90_RS17795 PF00892 EamA-like transporter family CJO90_RS17810 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CJO90_RS17810 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO90_RS17820 PF01095 Pectinesterase CJO90_RS17835 PF07963 Prokaryotic N-terminal methylation motif CJO90_RS17835 PF14245 Type IV pilin PilA CJO90_RS17840 PF13737 Transposase DDE domain CJO90_RS17845 PF07963 Prokaryotic N-terminal methylation motif CJO90_RS17845 PF08334 Type II secretion system (T2SS), protein G CJO90_RS17850 PF03958 Bacterial type II/III secretion system short domain CJO90_RS17850 PF00263 Bacterial type II and III secretion system protein CJO90_RS17875 PF00437 Type II/IV secretion system protein CJO90_RS17880 PF00482 Type II secretion system (T2SS), protein F CJO90_RS17885 PF07963 Prokaryotic N-terminal methylation motif CJO90_RS17885 PF08334 Type II secretion system (T2SS), protein G CJO90_RS17905 PF00150 Cellulase (glycosyl hydrolase family 5) CJO90_RS17915 PF01554 MatE CJO90_RS17920 PF03621 MbtH-like protein CJO90_RS17925 PF00668 Condensation domain CJO90_RS17925 PF00975 Thioesterase domain CJO90_RS17925 PF13193 AMP-binding enzyme C-terminal domain CJO90_RS17925 PF00550 Phosphopantetheine attachment site CJO90_RS17925 PF00501 AMP-binding enzyme CJO90_RS17965 PF00266 Aminotransferase class-V CJO90_RS17970 PF08241 Methyltransferase domain CJO90_RS18025 PF07690 Major Facilitator Superfamily CJO90_RS18030 PF10282 Lactonase, 7-bladed beta-propeller CJO90_RS18080 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CJO90_RS18080 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CJO90_RS18085 PF00561 alpha/beta hydrolase fold CJO90_RS18095 PF02600 Disulfide bond formation protein DsbB CJO90_RS18100 PF00202 Aminotransferase class-III CJO90_RS18120 PF03061 Thioesterase superfamily CJO90_RS18160 PF01048 Phosphorylase superfamily CJO90_RS18160 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CJO90_RS18175 PF01609 Transposase DDE domain CJO90_RS18175 PF05598 Transposase domain (DUF772) CJO90_RS18185 PF00069 Protein kinase domain CJO90_RS18190 PF05598 Transposase domain (DUF772) CJO90_RS18190 PF01609 Transposase DDE domain CJO90_RS18200 PF01593 Flavin containing amine oxidoreductase CJO90_RS18220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS18220 PF00072 Response regulator receiver domain CJO90_RS18225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS18225 PF03466 LysR substrate binding domain CJO90_RS18230 PF00355 Rieske [2Fe-2S] domain CJO90_RS18235 PF00111 2Fe-2S iron-sulfur cluster binding domain CJO90_RS18235 PF00175 Oxidoreductase NAD-binding domain CJO90_RS18240 PF01047 MarR family CJO90_RS18245 PF00378 Enoyl-CoA hydratase/isomerase CJO90_RS18250 PF00171 Aldehyde dehydrogenase family CJO90_RS18255 PF00550 Phosphopantetheine attachment site CJO90_RS18255 PF07993 Male sterility protein CJO90_RS18255 PF00501 AMP-binding enzyme CJO90_RS18260 PF02830 V4R domain CJO90_RS18260 PF00158 Sigma-54 interaction domain CJO90_RS18260 PF02954 Bacterial regulatory protein, Fis family CJO90_RS18260 PF06505 Activator of aromatic catabolism CJO90_RS18290 PF07690 Major Facilitator Superfamily CJO90_RS18310 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CJO90_RS18310 PF00128 Alpha amylase, catalytic domain CJO90_RS18320 PF00128 Alpha amylase, catalytic domain CJO90_RS18320 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CJO90_RS18320 PF02806 Alpha amylase, C-terminal all-beta domain CJO90_RS18325 PF00128 Alpha amylase, catalytic domain CJO90_RS18325 PF16657 Maltogenic Amylase, C-terminal domain CJO90_RS18335 PF08323 Starch synthase catalytic domain CJO90_RS18335 PF00534 Glycosyl transferases group 1 CJO90_RS18340 PF05171 Haemin-degrading HemS.ChuX domain CJO90_RS18345 PF00593 TonB dependent receptor CJO90_RS18345 PF07715 TonB-dependent Receptor Plug Domain CJO90_RS18350 PF10417 C-terminal domain of 1-Cys peroxiredoxin CJO90_RS18350 PF00578 AhpC/TSA family CJO90_RS18355 PF13192 Thioredoxin domain CJO90_RS18355 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO90_RS18360 PF01475 Ferric uptake regulator family CJO90_RS18380 PF07664 Ferrous iron transport protein B C terminus CJO90_RS18380 PF04023 FeoA domain CJO90_RS18380 PF17910 FeoB cytosolic helical domain CJO90_RS18380 PF02421 Ferrous iron transport protein B CJO90_RS18380 PF07670 Nucleoside recognition CJO90_RS18390 PF00563 EAL domain CJO90_RS18390 PF13426 PAS domain CJO90_RS18390 PF08448 PAS fold CJO90_RS18390 PF08447 PAS fold CJO90_RS18390 PF00990 Diguanylate cyclase, GGDEF domain CJO90_RS18390 PF05231 MASE1 CJO90_RS18395 PF00990 Diguanylate cyclase, GGDEF domain CJO90_RS18395 PF00563 EAL domain CJO90_RS18395 PF03707 Bacterial signalling protein N terminal repeat CJO90_RS18400 PF08447 PAS fold CJO90_RS18400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO90_RS18420 PF01470 Pyroglutamyl peptidase CJO90_RS18435 PF04349 Periplasmic glucan biosynthesis protein, MdoG CJO90_RS18445 PF00583 Acetyltransferase (GNAT) family CJO90_RS18490 PF01609 Transposase DDE domain CJO90_RS18490 PF05598 Transposase domain (DUF772) CJO90_RS18500 PF01546 Peptidase family M20/M25/M40 CJO90_RS18500 PF07687 Peptidase dimerisation domain CJO90_RS18520 PF00291 Pyridoxal-phosphate dependent enzyme CJO90_RS18520 PF00571 CBS domain CJO90_RS18525 PF01204 Trehalase CJO90_RS18540 PF00990 Diguanylate cyclase, GGDEF domain CJO90_RS18540 PF07694 5TMR of 5TMR-LYT CJO90_RS18545 PF13520 Amino acid permease CJO90_RS18565 PF00196 Bacterial regulatory proteins, luxR family CJO90_RS18575 PF01522 Polysaccharide deacetylase CJO90_RS18575 PF14883 Hypothetical glycosyl hydrolase family 13 CJO90_RS18580 PF00535 Glycosyl transferase family 2 CJO90_RS18595 PF13533 Biotin-lipoyl like CJO90_RS18635 PF01609 Transposase DDE domain CJO90_RS18635 PF05598 Transposase domain (DUF772) CJO90_RS18640 PF00672 HAMP domain CJO90_RS18640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO90_RS18640 PF02203 Tar ligand binding domain homologue CJO90_RS18665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS18665 PF03466 LysR substrate binding domain CJO90_RS18670 PF03551 Transcriptional regulator PadR-like family CJO90_RS18670 PF10400 Virulence activator alpha C-term CJO90_RS18680 PF02321 Outer membrane efflux protein CJO90_RS18685 PF00873 AcrB/AcrD/AcrF family CJO90_RS18690 PF00529 HlyD membrane-fusion protein of T1SS CJO90_RS18690 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJO90_RS18695 PF00486 Transcriptional regulatory protein, C terminal CJO90_RS18695 PF00072 Response regulator receiver domain CJO90_RS18700 PF00672 HAMP domain CJO90_RS18700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS18700 PF00512 His Kinase A (phospho-acceptor) domain CJO90_RS18705 PF03060 Nitronate monooxygenase CJO90_RS18715 PF00582 Universal stress protein family CJO90_RS18735 PF00403 Heavy-metal-associated domain CJO90_RS18740 PF13411 MerR HTH family regulatory protein CJO90_RS18750 PF00682 HMGL-like CJO90_RS18750 PF08502 LeuA allosteric (dimerisation) domain CJO90_RS18765 PF00111 2Fe-2S iron-sulfur cluster binding domain CJO90_RS18765 PF01799 [2Fe-2S] binding domain CJO90_RS18770 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CJO90_RS18775 PF02566 OsmC-like protein CJO90_RS18790 PF00180 Isocitrate/isopropylmalate dehydrogenase CJO90_RS18795 PF00694 Aconitase C-terminal domain CJO90_RS18795 PF00330 Aconitase family (aconitate hydratase) CJO90_RS18805 PF11791 Aconitate B N-terminal domain CJO90_RS18805 PF06434 Aconitate hydratase 2 N-terminus CJO90_RS18805 PF00330 Aconitase family (aconitate hydratase) CJO90_RS18810 PF05433 Glycine zipper 2TM domain CJO90_RS18815 PF03707 Bacterial signalling protein N terminal repeat CJO90_RS18815 PF00990 Diguanylate cyclase, GGDEF domain CJO90_RS18815 PF00563 EAL domain CJO90_RS18825 PF00816 H-NS histone family CJO90_RS18845 PF01609 Transposase DDE domain CJO90_RS18845 PF05598 Transposase domain (DUF772) CJO90_RS18870 PF00460 Flagella basal body rod protein CJO90_RS18875 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJO90_RS18875 PF00460 Flagella basal body rod protein CJO90_RS18880 PF03963 Flagellar hook capping protein - N-terminal region CJO90_RS18880 PF13860 FlgD Ig-like domain CJO90_RS18880 PF13861 FlgD Tudor-like domain CJO90_RS18885 PF00460 Flagella basal body rod protein CJO90_RS18885 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJO90_RS18885 PF07559 Flagellar basal body protein FlaE CJO90_RS18890 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJO90_RS18890 PF00460 Flagella basal body rod protein CJO90_RS18895 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJO90_RS18895 PF00460 Flagella basal body rod protein CJO90_RS18900 PF02107 Flagellar L-ring protein CJO90_RS18905 PF02119 Flagellar P-ring protein CJO90_RS18910 PF10135 Rod binding protein CJO90_RS18910 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CJO90_RS18915 PF00460 Flagella basal body rod protein CJO90_RS18915 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CJO90_RS18920 PF00669 Bacterial flagellin N-terminal helical region CJO90_RS18930 PF04820 Tryptophan halogenase CJO90_RS18935 PF08241 Methyltransferase domain CJO90_RS18945 PF00109 Beta-ketoacyl synthase, N-terminal domain CJO90_RS18945 PF02801 Beta-ketoacyl synthase, C-terminal domain CJO90_RS18950 PF02801 Beta-ketoacyl synthase, C-terminal domain CJO90_RS18950 PF00109 Beta-ketoacyl synthase, N-terminal domain CJO90_RS18965 PF02801 Beta-ketoacyl synthase, C-terminal domain CJO90_RS18965 PF00109 Beta-ketoacyl synthase, N-terminal domain CJO90_RS18985 PF00221 Aromatic amino acid lyase CJO90_RS18995 PF00501 AMP-binding enzyme CJO90_RS18995 PF13193 AMP-binding enzyme C-terminal domain CJO90_RS19005 PF00550 Phosphopantetheine attachment site CJO90_RS19015 PF01553 Acyltransferase CJO90_RS19025 PF01311 Bacterial export proteins, family 1 CJO90_RS19030 PF01313 Bacterial export proteins, family 3 CJO90_RS19035 PF00813 FliP family CJO90_RS19040 PF04347 Flagellar biosynthesis protein, FliO CJO90_RS19045 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CJO90_RS19050 PF02154 Flagellar motor switch protein FliM CJO90_RS19050 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CJO90_RS19060 PF00563 EAL domain CJO90_RS19060 PF00990 Diguanylate cyclase, GGDEF domain CJO90_RS19060 PF03707 Bacterial signalling protein N terminal repeat CJO90_RS19065 PF00196 Bacterial regulatory proteins, luxR family CJO90_RS19065 PF00072 Response regulator receiver domain CJO90_RS19070 PF00700 Bacterial flagellin C-terminal helical region CJO90_RS19070 PF00669 Bacterial flagellin N-terminal helical region CJO90_RS19080 PF07195 Flagellar hook-associated protein 2 C-terminus CJO90_RS19080 PF07196 Flagellin hook IN motif CJO90_RS19080 PF02465 Flagellar hook-associated protein 2 N-terminus CJO90_RS19085 PF02561 Flagellar protein FliS CJO90_RS19095 PF01047 MarR family CJO90_RS19100 PF00535 Glycosyl transferase family 2 CJO90_RS19110 PF02049 Flagellar hook-basal body complex protein FliE CJO90_RS19115 PF08345 Flagellar M-ring protein C-terminal CJO90_RS19115 PF01514 Secretory protein of YscJ/FliF family CJO90_RS19120 PF14841 FliG middle domain CJO90_RS19120 PF14842 FliG N-terminal domain CJO90_RS19120 PF01706 FliG C-terminal domain CJO90_RS19125 PF02108 Flagellar assembly protein FliH CJO90_RS19130 PF18269 T3SS EscN ATPase C-terminal domain CJO90_RS19130 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJO90_RS19155 PF00563 EAL domain CJO90_RS19155 PF00360 Phytochrome region CJO90_RS19155 PF01590 GAF domain CJO90_RS19155 PF00990 Diguanylate cyclase, GGDEF domain CJO90_RS19165 PF00990 Diguanylate cyclase, GGDEF domain CJO90_RS19165 PF00563 EAL domain CJO90_RS19165 PF00360 Phytochrome region CJO90_RS19165 PF01590 GAF domain CJO90_RS19185 PF01609 Transposase DDE domain CJO90_RS19185 PF13006 Insertion element 4 transposase N-terminal CJO90_RS19205 PF00501 AMP-binding enzyme CJO90_RS19255 PF07690 Major Facilitator Superfamily CJO90_RS19265 PF07715 TonB-dependent Receptor Plug Domain CJO90_RS19265 PF00593 TonB dependent receptor CJO90_RS19275 PF07715 TonB-dependent Receptor Plug Domain CJO90_RS19275 PF00593 TonB dependent receptor CJO90_RS19280 PF00291 Pyridoxal-phosphate dependent enzyme CJO90_RS19285 PF02423 Ornithine cyclodeaminase/mu-crystallin family CJO90_RS19290 PF04183 IucA / IucC family CJO90_RS19290 PF06276 Ferric iron reductase FhuF-like transporter CJO90_RS19295 PF07690 Major Facilitator Superfamily CJO90_RS19300 PF04183 IucA / IucC family CJO90_RS19300 PF06276 Ferric iron reductase FhuF-like transporter CJO90_RS19305 PF06276 Ferric iron reductase FhuF-like transporter CJO90_RS19305 PF04183 IucA / IucC family CJO90_RS19310 PF03328 HpcH/HpaI aldolase/citrate lyase family CJO90_RS19315 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CJO90_RS19315 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CJO90_RS19320 PF01738 Dienelactone hydrolase family CJO90_RS19320 PF00156 Phosphoribosyl transferase domain CJO90_RS19335 PF13533 Biotin-lipoyl like CJO90_RS19345 PF02321 Outer membrane efflux protein CJO90_RS19360 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CJO90_RS19365 PF01370 NAD dependent epimerase/dehydratase family CJO90_RS19370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS19370 PF03466 LysR substrate binding domain CJO90_RS19375 PF00005 ABC transporter CJO90_RS19380 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS19385 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJO90_RS19390 PF01037 Lrp/AsnC ligand binding domain CJO90_RS19395 PF02423 Ornithine cyclodeaminase/mu-crystallin family CJO90_RS19405 PF13419 Haloacid dehalogenase-like hydrolase CJO90_RS19420 PF01546 Peptidase family M20/M25/M40 CJO90_RS19420 PF07687 Peptidase dimerisation domain CJO90_RS19425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS19425 PF00672 HAMP domain CJO90_RS19425 PF00512 His Kinase A (phospho-acceptor) domain CJO90_RS19430 PF00486 Transcriptional regulatory protein, C terminal CJO90_RS19430 PF00072 Response regulator receiver domain CJO90_RS19440 PF02321 Outer membrane efflux protein CJO90_RS19445 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJO90_RS19445 PF00529 HlyD membrane-fusion protein of T1SS CJO90_RS19450 PF00873 AcrB/AcrD/AcrF family CJO90_RS19455 PF01230 HIT domain CJO90_RS19460 PF03616 Sodium/glutamate symporter CJO90_RS19500 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CJO90_RS19500 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CJO90_RS19510 PF02203 Tar ligand binding domain homologue CJO90_RS19510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO90_RS19510 PF00672 HAMP domain CJO90_RS19525 PF02350 UDP-N-acetylglucosamine 2-epimerase CJO90_RS19545 PF00924 Mechanosensitive ion channel CJO90_RS19565 PF01548 Transposase CJO90_RS19565 PF02371 Transposase IS116/IS110/IS902 family CJO90_RS19575 PF04717 Type VI secretion system, phage-baseplate injector CJO90_RS19575 PF13296 Putative type VI secretion system Rhs element Vgr CJO90_RS19575 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) CJO90_RS19580 PF05230 MASE2 domain CJO90_RS19580 PF00990 Diguanylate cyclase, GGDEF domain CJO90_RS19585 PF01566 Natural resistance-associated macrophage protein CJO90_RS19605 PF00486 Transcriptional regulatory protein, C terminal CJO90_RS19605 PF00072 Response regulator receiver domain CJO90_RS19610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS19610 PF00512 His Kinase A (phospho-acceptor) domain CJO90_RS19615 PF13460 NAD(P)H-binding CJO90_RS19630 PF02321 Outer membrane efflux protein CJO90_RS19635 PF13533 Biotin-lipoyl like CJO90_RS19640 PF00873 AcrB/AcrD/AcrF family CJO90_RS19650 PF11838 ERAP1-like C-terminal domain CJO90_RS19650 PF01433 Peptidase family M1 domain CJO90_RS19660 PF00149 Calcineurin-like phosphoesterase CJO90_RS19665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS19665 PF03466 LysR substrate binding domain CJO90_RS19670 PF07690 Major Facilitator Superfamily CJO90_RS19690 PF13737 Transposase DDE domain CJO90_RS19700 PF05598 Transposase domain (DUF772) CJO90_RS19700 PF01609 Transposase DDE domain CJO90_RS19730 PF05598 Transposase domain (DUF772) CJO90_RS19730 PF01609 Transposase DDE domain CJO90_RS19740 PF17287 POTRA domain CJO90_RS19740 PF08479 POTRA domain, ShlB-type CJO90_RS19740 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CJO90_RS19745 PF01979 Amidohydrolase family CJO90_RS19750 PF03824 High-affinity nickel-transport protein CJO90_RS19755 PF02583 Metal-sensitive transcriptional repressor CJO90_RS19760 PF09828 Chromate resistance exported protein CJO90_RS19765 PF02417 Chromate transporter CJO90_RS19770 PF09828 Chromate resistance exported protein CJO90_RS19800 PF00578 AhpC/TSA family CJO90_RS19825 PF01609 Transposase DDE domain CJO90_RS19825 PF05598 Transposase domain (DUF772) CJO90_RS19830 PF00041 Fibronectin type III domain CJO90_RS19830 PF00553 Cellulose binding domain CJO90_RS19830 PF01341 Glycosyl hydrolases family 6 CJO90_RS19850 PF00106 short chain dehydrogenase CJO90_RS19855 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CJO90_RS19855 PF12833 Helix-turn-helix domain CJO90_RS19895 PF00753 Metallo-beta-lactamase superfamily CJO90_RS19910 PF00072 Response regulator receiver domain CJO90_RS19910 PF01584 CheW-like domain CJO90_RS19935 PF00082 Subtilase family CJO90_RS19935 PF05922 Peptidase inhibitor I9 CJO90_RS19940 PF05138 Phenylacetic acid catabolic protein CJO90_RS19945 PF06243 Phenylacetic acid degradation B CJO90_RS19950 PF05138 Phenylacetic acid catabolic protein CJO90_RS19955 PF01883 Iron-sulfur cluster assembly protein CJO90_RS19960 PF00175 Oxidoreductase NAD-binding domain CJO90_RS19960 PF00111 2Fe-2S iron-sulfur cluster binding domain CJO90_RS19960 PF00970 Oxidoreductase FAD-binding domain CJO90_RS19990 PF00881 Nitroreductase family CJO90_RS19995 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CJO90_RS19995 PF07685 CobB/CobQ-like glutamine amidotransferase domain CJO90_RS20000 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CJO90_RS20000 PF12557 Cob(I)alamin adenosyltransferase N terminal CJO90_RS20005 PF02492 CobW/HypB/UreG, nucleotide-binding domain CJO90_RS20005 PF07683 Cobalamin synthesis protein cobW C-terminal domain CJO90_RS20010 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CJO90_RS20010 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJO90_RS20015 PF01890 Cobalamin synthesis G C-terminus CJO90_RS20020 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJO90_RS20025 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJO90_RS20030 PF01888 CbiD CJO90_RS20035 PF01903 CbiX CJO90_RS20040 PF10414 Sirohaem synthase dimerisation region CJO90_RS20040 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CJO90_RS20040 PF14824 Sirohaem biosynthesis protein central CJO90_RS20050 PF01609 Transposase DDE domain CJO90_RS20050 PF05598 Transposase domain (DUF772) CJO90_RS20060 PF13519 von Willebrand factor type A domain CJO90_RS20060 PF07728 AAA domain (dynein-related subfamily) CJO90_RS20060 PF17863 AAA lid domain CJO90_RS20065 PF02514 CobN/Magnesium Chelatase CJO90_RS20075 PF03824 High-affinity nickel-transport protein CJO90_RS20080 PF04717 Type VI secretion system, phage-baseplate injector CJO90_RS20105 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CJO90_RS20110 PF01757 Acyltransferase family CJO90_RS20115 PF08281 Sigma-70, region 4 CJO90_RS20115 PF04542 Sigma-70 region 2 CJO90_RS20125 PF00664 ABC transporter transmembrane region CJO90_RS20125 PF00005 ABC transporter CJO90_RS20130 PF18456 Diiron non-heme beta-hydroxylase N-terminal domain CJO90_RS20130 PF12706 Beta-lactamase superfamily domain CJO90_RS20135 PF03621 MbtH-like protein CJO90_RS20140 PF00501 AMP-binding enzyme CJO90_RS20140 PF00668 Condensation domain CJO90_RS20140 PF13193 AMP-binding enzyme C-terminal domain CJO90_RS20140 PF00550 Phosphopantetheine attachment site CJO90_RS20140 PF00975 Thioesterase domain CJO90_RS20150 PF01037 Lrp/AsnC ligand binding domain CJO90_RS20155 PF00291 Pyridoxal-phosphate dependent enzyme CJO90_RS20160 PF00378 Enoyl-CoA hydratase/isomerase CJO90_RS20165 PF00378 Enoyl-CoA hydratase/isomerase CJO90_RS20170 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CJO90_RS20170 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CJO90_RS20175 PF00171 Aldehyde dehydrogenase family CJO90_RS20180 PF00501 AMP-binding enzyme CJO90_RS20180 PF13193 AMP-binding enzyme C-terminal domain CJO90_RS20185 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJO90_RS20185 PF02770 Acyl-CoA dehydrogenase, middle domain CJO90_RS20185 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJO90_RS20190 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CJO90_RS20190 PF12833 Helix-turn-helix domain CJO90_RS20195 PF00672 HAMP domain CJO90_RS20195 PF00512 His Kinase A (phospho-acceptor) domain CJO90_RS20195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS20200 PF00486 Transcriptional regulatory protein, C terminal CJO90_RS20200 PF00072 Response regulator receiver domain CJO90_RS20205 PF07731 Multicopper oxidase CJO90_RS20205 PF00394 Multicopper oxidase CJO90_RS20205 PF07732 Multicopper oxidase CJO90_RS20210 PF05275 Copper resistance protein B precursor (CopB) CJO90_RS20215 PF04234 CopC domain CJO90_RS20220 PF05425 Copper resistance protein D CJO90_RS20225 PF13609 Gram-negative porin CJO90_RS20235 PF01047 MarR family CJO90_RS20250 PF00857 Isochorismatase family CJO90_RS20255 PF03466 LysR substrate binding domain CJO90_RS20255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS20260 PF07690 Major Facilitator Superfamily CJO90_RS20265 PF01047 MarR family CJO90_RS20270 PF01544 CorA-like Mg2+ transporter protein CJO90_RS20275 PF03352 Methyladenine glycosylase CJO90_RS20290 PF02321 Outer membrane efflux protein CJO90_RS20300 PF00873 AcrB/AcrD/AcrF family CJO90_RS20305 PF00378 Enoyl-CoA hydratase/isomerase CJO90_RS20315 PF03783 Curli production assembly/transport component CsgG CJO90_RS20325 PF05643 Putative bacterial lipoprotein (DUF799) CJO90_RS20330 PF01717 Cobalamin-independent synthase, Catalytic domain CJO90_RS20330 PF08267 Cobalamin-independent synthase, N-terminal domain CJO90_RS20335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS20335 PF03466 LysR substrate binding domain CJO90_RS20340 PF01243 Pyridoxamine 5'-phosphate oxidase CJO90_RS20340 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CJO90_RS20345 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CJO90_RS20345 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CJO90_RS20350 PF00218 Indole-3-glycerol phosphate synthase CJO90_RS20355 PF00591 Glycosyl transferase family, a/b domain CJO90_RS20355 PF02885 Glycosyl transferase family, helical bundle domain CJO90_RS20375 PF01168 Alanine racemase, N-terminal domain CJO90_RS20395 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CJO90_RS20395 PF02770 Acyl-CoA dehydrogenase, middle domain CJO90_RS20395 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CJO90_RS20415 PF04209 homogentisate 1,2-dioxygenase CJO90_RS20420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS20420 PF03466 LysR substrate binding domain CJO90_RS20430 PF03301 Tryptophan 2,3-dioxygenase CJO90_RS20440 PF00266 Aminotransferase class-V CJO90_RS20445 PF00106 short chain dehydrogenase CJO90_RS20450 PF00155 Aminotransferase class I and II CJO90_RS20455 PF00472 RF-1 domain CJO90_RS20470 PF01494 FAD binding domain CJO90_RS20490 PF00005 ABC transporter CJO90_RS20490 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJO90_RS20495 PF00005 ABC transporter CJO90_RS20505 PF01609 Transposase DDE domain CJO90_RS20505 PF05598 Transposase domain (DUF772) CJO90_RS20510 PF00067 Cytochrome P450 CJO90_RS20515 PF00892 EamA-like transporter family CJO90_RS20535 PF01063 Amino-transferase class IV CJO90_RS20550 PF03150 Di-haem cytochrome c peroxidase CJO90_RS20580 PF01958 Domain of unknown function DUF108 CJO90_RS20580 PF03447 Homoserine dehydrogenase, NAD binding domain CJO90_RS20600 PF00982 Glycosyltransferase family 20 CJO90_RS20635 PF06715 Gp5 C-terminal repeat (3 copies) CJO90_RS20635 PF04717 Type VI secretion system, phage-baseplate injector CJO90_RS20645 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE CJO90_RS20660 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 CJO90_RS20665 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath CJO90_RS20675 PF04965 Gene 25-like lysozyme CJO90_RS20680 PF05947 Type VI secretion system, TssF CJO90_RS20690 PF00004 ATPase family associated with various cellular activities (AAA) CJO90_RS20690 PF07724 AAA domain (Cdc48 subfamily) CJO90_RS20690 PF17871 AAA lid domain CJO90_RS20690 PF10431 C-terminal, D2-small domain, of ClpB protein CJO90_RS20740 PF02638 Glycosyl hydrolase-like 10 CJO90_RS20765 PF14331 ImcF-related N-terminal domain CJO90_RS20765 PF06744 Type VI secretion protein IcmF C-terminal CJO90_RS20765 PF06761 Intracellular multiplication and human macrophage-killing CJO90_RS20790 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) CJO90_RS20790 PF13296 Putative type VI secretion system Rhs element Vgr CJO90_RS20790 PF04717 Type VI secretion system, phage-baseplate injector CJO90_RS20835 PF03472 Autoinducer binding domain CJO90_RS20835 PF00196 Bacterial regulatory proteins, luxR family CJO90_RS20840 PF00765 Autoinducer synthase CJO90_RS20855 PF08264 Anticodon-binding domain of tRNA CJO90_RS20855 PF10458 Valyl tRNA synthetase tRNA binding arm CJO90_RS20855 PF00133 tRNA synthetases class I (I, L, M and V) CJO90_RS20880 PF00501 AMP-binding enzyme CJO90_RS20885 PF02543 Carbamoyltransferase N-terminus CJO90_RS20885 PF16861 Carbamoyltransferase C-terminus CJO90_RS20900 PF14765 Polyketide synthase dehydratase CJO90_RS20900 PF00550 Phosphopantetheine attachment site CJO90_RS20900 PF08659 KR domain CJO90_RS20900 PF02801 Beta-ketoacyl synthase, C-terminal domain CJO90_RS20900 PF00109 Beta-ketoacyl synthase, N-terminal domain CJO90_RS20900 PF16197 Ketoacyl-synthetase C-terminal extension CJO90_RS20900 PF00668 Condensation domain CJO90_RS20900 PF00501 AMP-binding enzyme CJO90_RS20900 PF13193 AMP-binding enzyme C-terminal domain CJO90_RS20915 PF00155 Aminotransferase class I and II CJO90_RS20925 PF00440 Bacterial regulatory proteins, tetR family CJO90_RS20930 PF07690 Major Facilitator Superfamily CJO90_RS20945 PF02811 PHP domain CJO90_RS20945 PF14579 Helix-hairpin-helix motif CJO90_RS20945 PF07733 Bacterial DNA polymerase III alpha NTPase domain CJO90_RS20945 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CJO90_RS20950 PF01381 Helix-turn-helix CJO90_RS20955 PF03600 Citrate transporter CJO90_RS20965 PF00679 Elongation factor G C-terminus CJO90_RS20965 PF03144 Elongation factor Tu domain 2 CJO90_RS20965 PF00009 Elongation factor Tu GTP binding domain CJO90_RS20965 PF03764 Elongation factor G, domain IV CJO90_RS20965 PF14492 Elongation Factor G, domain II CJO90_RS20980 PF11953 Domain of unknown function (DUF3470) CJO90_RS20980 PF00037 4Fe-4S binding domain CJO90_RS20995 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CJO90_RS20995 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CJO90_RS21010 PF03707 Bacterial signalling protein N terminal repeat CJO90_RS21010 PF00990 Diguanylate cyclase, GGDEF domain CJO90_RS21010 PF00563 EAL domain CJO90_RS21015 PF06039 Malate:quinone oxidoreductase (Mqo) CJO90_RS21025 PF00440 Bacterial regulatory proteins, tetR family CJO90_RS21025 PF17934 Tetracyclin repressor-like, C-terminal domain CJO90_RS21030 PF02321 Outer membrane efflux protein CJO90_RS21035 PF00873 AcrB/AcrD/AcrF family CJO90_RS21040 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJO90_RS21040 PF00529 HlyD membrane-fusion protein of T1SS CJO90_RS21060 PF03466 LysR substrate binding domain CJO90_RS21060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS21075 PF00701 Dihydrodipicolinate synthetase family CJO90_RS21080 PF00171 Aldehyde dehydrogenase family CJO90_RS21085 PF07690 Major Facilitator Superfamily CJO90_RS21090 PF13378 Enolase C-terminal domain-like CJO90_RS21090 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CJO90_RS21095 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CJO90_RS21095 PF08666 SAF domain CJO90_RS21100 PF01370 NAD dependent epimerase/dehydratase family CJO90_RS21105 PF08450 SMP-30/Gluconolactonase/LRE-like region CJO90_RS21110 PF00295 Glycosyl hydrolases family 28 CJO90_RS21115 PF07690 Major Facilitator Superfamily CJO90_RS21120 PF01467 Cytidylyltransferase-like CJO90_RS21120 PF00293 NUDIX domain CJO90_RS21145 PF00672 HAMP domain CJO90_RS21145 PF02203 Tar ligand binding domain homologue CJO90_RS21145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO90_RS21150 PF01464 Transglycosylase SLT domain CJO90_RS21195 PF08281 Sigma-70, region 4 CJO90_RS21195 PF04542 Sigma-70 region 2 CJO90_RS21205 PF00196 Bacterial regulatory proteins, luxR family CJO90_RS21205 PF00072 Response regulator receiver domain CJO90_RS21210 PF00486 Transcriptional regulatory protein, C terminal CJO90_RS21210 PF00072 Response regulator receiver domain CJO90_RS21245 PF01313 Bacterial export proteins, family 3 CJO90_RS21250 PF00813 FliP family CJO90_RS21260 PF09483 Type III secretion protein (HpaP) CJO90_RS21265 PF00771 FHIPEP family CJO90_RS21270 PF01312 FlhB HrpN YscU SpaS Family CJO90_RS21285 PF01514 Secretory protein of YscJ/FliF family CJO90_RS21300 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CJO90_RS21300 PF02874 ATP synthase alpha/beta family, beta-barrel domain CJO90_RS21300 PF18269 T3SS EscN ATPase C-terminal domain CJO90_RS21315 PF12833 Helix-turn-helix domain CJO90_RS21320 PF03958 Bacterial type II/III secretion system short domain CJO90_RS21320 PF00263 Bacterial type II and III secretion system protein CJO90_RS21350 PF00295 Glycosyl hydrolases family 28 CJO90_RS21370 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CJO90_RS21370 PF09397 Ftsk gamma domain CJO90_RS21370 PF17854 FtsK alpha domain CJO90_RS21370 PF01580 FtsK/SpoIIIE family CJO90_RS21380 PF00120 Glutamine synthetase, catalytic domain CJO90_RS21380 PF03951 Glutamine synthetase, beta-Grasp domain CJO90_RS21385 PF03466 LysR substrate binding domain CJO90_RS21385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS21400 PF00171 Aldehyde dehydrogenase family CJO90_RS21405 PF01557 Fumarylacetoacetate (FAA) hydrolase family CJO90_RS21410 PF01557 Fumarylacetoacetate (FAA) hydrolase family CJO90_RS21415 PF01361 Tautomerase enzyme CJO90_RS21420 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation CJO90_RS21420 PF01118 Semialdehyde dehydrogenase, NAD binding domain CJO90_RS21430 PF07690 Major Facilitator Superfamily CJO90_RS21440 PF13462 Thioredoxin CJO90_RS21450 PF05819 NolX protein CJO90_RS21480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS21480 PF03466 LysR substrate binding domain CJO90_RS21485 PF01494 FAD binding domain CJO90_RS21490 PF03466 LysR substrate binding domain CJO90_RS21490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS21495 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CJO90_RS21510 PF00440 Bacterial regulatory proteins, tetR family CJO90_RS21510 PF08359 YsiA-like protein, C-terminal region CJO90_RS21520 PF05598 Transposase domain (DUF772) CJO90_RS21520 PF01609 Transposase DDE domain CJO90_RS21530 PF04333 MlaA lipoprotein CJO90_RS21535 PF00072 Response regulator receiver domain CJO90_RS21535 PF00486 Transcriptional regulatory protein, C terminal CJO90_RS21555 PF05598 Transposase domain (DUF772) CJO90_RS21555 PF01609 Transposase DDE domain CJO90_RS21640 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJO90_RS21640 PF00529 HlyD membrane-fusion protein of T1SS CJO90_RS21645 PF00873 AcrB/AcrD/AcrF family CJO90_RS21660 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJO90_RS21665 PF00005 ABC transporter CJO90_RS21670 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS21675 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS21680 PF00106 short chain dehydrogenase CJO90_RS21685 PF03746 LamB/YcsF family CJO90_RS21695 PF02626 Carboxyltransferase domain, subdomain A and B CJO90_RS21700 PF02682 Carboxyltransferase domain, subdomain C and D CJO90_RS21705 PF02785 Biotin carboxylase C-terminal domain CJO90_RS21705 PF00289 Biotin carboxylase, N-terminal domain CJO90_RS21705 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CJO90_RS21710 PF00364 Biotin-requiring enzyme CJO90_RS21715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS21715 PF03466 LysR substrate binding domain CJO90_RS21720 PF00155 Aminotransferase class I and II CJO90_RS21725 PF03737 Aldolase/RraA CJO90_RS21750 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CJO90_RS21750 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CJO90_RS21755 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CJO90_RS21760 PF02233 NAD(P) transhydrogenase beta subunit CJO90_RS21765 PF13609 Gram-negative porin CJO90_RS21805 PF04405 Domain of Unknown function (DUF542) CJO90_RS21805 PF01814 Hemerythrin HHE cation binding domain CJO90_RS21810 PF02954 Bacterial regulatory protein, Fis family CJO90_RS21810 PF00158 Sigma-54 interaction domain CJO90_RS21815 PF01370 NAD dependent epimerase/dehydratase family CJO90_RS21820 PF00155 Aminotransferase class I and II CJO90_RS21825 PF08671 Anti-repressor SinI CJO90_RS21825 PF01381 Helix-turn-helix CJO90_RS21850 PF08859 DGC domain CJO90_RS21855 PF02036 SCP-2 sterol transfer family CJO90_RS21860 PF01136 Peptidase family U32 CJO90_RS21865 PF01136 Peptidase family U32 CJO90_RS21875 PF07690 Major Facilitator Superfamily CJO90_RS21880 PF07690 Major Facilitator Superfamily CJO90_RS21885 PF00384 Molybdopterin oxidoreductase CJO90_RS21885 PF01568 Molydopterin dinucleotide binding domain CJO90_RS21885 PF14710 Respiratory nitrate reductase alpha N-terminal CJO90_RS21890 PF14711 Respiratory nitrate reductase beta C-terminal CJO90_RS21890 PF13247 4Fe-4S dicluster domain CJO90_RS21895 PF02613 Nitrate reductase delta subunit CJO90_RS21900 PF02665 Nitrate reductase gamma subunit CJO90_RS21905 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CJO90_RS21910 PF00672 HAMP domain CJO90_RS21910 PF07730 Histidine kinase CJO90_RS21910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS21910 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CJO90_RS21915 PF00196 Bacterial regulatory proteins, luxR family CJO90_RS21915 PF00072 Response regulator receiver domain CJO90_RS21935 PF02581 Thiamine monophosphate synthase CJO90_RS21940 PF00083 Sugar (and other) transporter CJO90_RS21940 PF07690 Major Facilitator Superfamily CJO90_RS21945 PF00465 Iron-containing alcohol dehydrogenase CJO90_RS21960 PF02630 SCO1/SenC CJO90_RS21965 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CJO90_RS21965 PF00034 Cytochrome c CJO90_RS21975 PF00115 Cytochrome C and Quinol oxidase polypeptide I CJO90_RS21980 PF17755 UvrA DNA-binding domain CJO90_RS21980 PF00005 ABC transporter CJO90_RS21980 PF17760 UvrA interaction domain CJO90_RS21985 PF00375 Sodium:dicarboxylate symporter family CJO90_RS21990 PF00180 Isocitrate/isopropylmalate dehydrogenase CJO90_RS21995 PF03466 LysR substrate binding domain CJO90_RS21995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS22025 PF02719 Polysaccharide biosynthesis protein CJO90_RS22035 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CJO90_RS22040 PF00132 Bacterial transferase hexapeptide (six repeats) CJO90_RS22040 PF14602 Hexapeptide repeat of succinyl-transferase CJO90_RS22040 PF17836 PglD N-terminal domain CJO90_RS22045 PF02397 Bacterial sugar transferase CJO90_RS22060 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CJO90_RS22060 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CJO90_RS22065 PF12464 Maltose acetyltransferase CJO90_RS22065 PF14602 Hexapeptide repeat of succinyl-transferase CJO90_RS22085 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CJO90_RS22085 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CJO90_RS22085 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CJO90_RS22090 PF02350 UDP-N-acetylglucosamine 2-epimerase CJO90_RS22095 PF13614 AAA domain CJO90_RS22095 PF13807 G-rich domain on putative tyrosine kinase CJO90_RS22095 PF02706 Chain length determinant protein CJO90_RS22100 PF01451 Low molecular weight phosphotyrosine protein phosphatase CJO90_RS22105 PF10531 SLBB domain CJO90_RS22105 PF02563 Polysaccharide biosynthesis/export protein CJO90_RS22150 PF00672 HAMP domain CJO90_RS22150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO90_RS22150 PF02203 Tar ligand binding domain homologue CJO90_RS22175 PF15887 Putative zinc-binding metallo-peptidase CJO90_RS22175 PF10005 zinc-ribbon domain CJO90_RS22190 PF05114 Protein of unknown function (DUF692) CJO90_RS22215 PF00873 AcrB/AcrD/AcrF family CJO90_RS22220 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJO90_RS22225 PF00486 Transcriptional regulatory protein, C terminal CJO90_RS22225 PF00072 Response regulator receiver domain CJO90_RS22230 PF00672 HAMP domain CJO90_RS22230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS22230 PF00512 His Kinase A (phospho-acceptor) domain CJO90_RS22250 PF07690 Major Facilitator Superfamily CJO90_RS22255 PF00384 Molybdopterin oxidoreductase CJO90_RS22265 PF02634 FdhD/NarQ family CJO90_RS22270 PF13188 PAS domain CJO90_RS22270 PF03707 Bacterial signalling protein N terminal repeat CJO90_RS22270 PF00563 EAL domain CJO90_RS22270 PF00990 Diguanylate cyclase, GGDEF domain CJO90_RS22275 PF02705 K+ potassium transporter CJO90_RS22280 PF00313 'Cold-shock' DNA-binding domain CJO90_RS22290 PF00171 Aldehyde dehydrogenase family CJO90_RS22295 PF00202 Aminotransferase class-III CJO90_RS22300 PF00392 Bacterial regulatory proteins, gntR family CJO90_RS22300 PF00155 Aminotransferase class I and II CJO90_RS22305 PF06314 Acetoacetate decarboxylase (ADC) CJO90_RS22320 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CJO90_RS22320 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CJO90_RS22325 PF00593 TonB dependent receptor CJO90_RS22325 PF07715 TonB-dependent Receptor Plug Domain CJO90_RS22350 PF01609 Transposase DDE domain CJO90_RS22350 PF05598 Transposase domain (DUF772) CJO90_RS22375 PF04740 LXG domain of WXG superfamily CJO90_RS22385 PF02794 RTX toxin acyltransferase family CJO90_RS22390 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CJO90_RS22390 PF17287 POTRA domain CJO90_RS22390 PF08479 POTRA domain, ShlB-type CJO90_RS22400 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CJO90_RS22400 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CJO90_RS22415 PF00158 Sigma-54 interaction domain CJO90_RS22415 PF02954 Bacterial regulatory protein, Fis family CJO90_RS22415 PF00072 Response regulator receiver domain CJO90_RS22440 PF00437 Type II/IV secretion system protein CJO90_RS22505 PF00563 EAL domain CJO90_RS22505 PF00990 Diguanylate cyclase, GGDEF domain CJO90_RS22505 PF03707 Bacterial signalling protein N terminal repeat CJO90_RS22515 PF08269 Cache domain CJO90_RS22515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO90_RS22525 PF16363 GDP-mannose 4,6 dehydratase CJO90_RS22530 PF00589 Phage integrase family CJO90_RS22530 PF02899 Phage integrase, N-terminal SAM-like domain CJO90_RS22535 PF02358 Trehalose-phosphatase CJO90_RS22540 PF00982 Glycosyltransferase family 20 CJO90_RS22545 PF01047 MarR family CJO90_RS22550 PF02566 OsmC-like protein CJO90_RS22555 PF07859 alpha/beta hydrolase fold CJO90_RS22565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS22565 PF03466 LysR substrate binding domain CJO90_RS22570 PF07859 alpha/beta hydrolase fold CJO90_RS22575 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJO90_RS22580 PF00873 AcrB/AcrD/AcrF family CJO90_RS22585 PF02321 Outer membrane efflux protein CJO90_RS22590 PF12833 Helix-turn-helix domain CJO90_RS22595 PF01212 Beta-eliminating lyase CJO90_RS22615 PF01638 HxlR-like helix-turn-helix CJO90_RS22620 PF01575 MaoC like domain CJO90_RS22640 PF08659 KR domain CJO90_RS22640 PF00550 Phosphopantetheine attachment site CJO90_RS22640 PF02801 Beta-ketoacyl synthase, C-terminal domain CJO90_RS22640 PF00107 Zinc-binding dehydrogenase CJO90_RS22640 PF16197 Ketoacyl-synthetase C-terminal extension CJO90_RS22640 PF08240 Alcohol dehydrogenase GroES-like domain CJO90_RS22640 PF00698 Acyl transferase domain CJO90_RS22640 PF00109 Beta-ketoacyl synthase, N-terminal domain CJO90_RS22640 PF14765 Polyketide synthase dehydratase CJO90_RS22660 PF00107 Zinc-binding dehydrogenase CJO90_RS22660 PF08240 Alcohol dehydrogenase GroES-like domain CJO90_RS22685 PF00106 short chain dehydrogenase CJO90_RS22700 PF00440 Bacterial regulatory proteins, tetR family CJO90_RS22705 PF12706 Beta-lactamase superfamily domain CJO90_RS22710 PF00106 short chain dehydrogenase CJO90_RS22715 PF08240 Alcohol dehydrogenase GroES-like domain CJO90_RS22715 PF00107 Zinc-binding dehydrogenase CJO90_RS22720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS22720 PF03466 LysR substrate binding domain CJO90_RS22725 PF00230 Major intrinsic protein CJO90_RS22730 PF01451 Low molecular weight phosphotyrosine protein phosphatase CJO90_RS22735 PF01022 Bacterial regulatory protein, arsR family CJO90_RS22745 PF05598 Transposase domain (DUF772) CJO90_RS22745 PF01609 Transposase DDE domain CJO90_RS22765 PF05076 Suppressor of fused protein (SUFU) CJO90_RS22770 PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues CJO90_RS22770 PF04740 LXG domain of WXG superfamily CJO90_RS22770 PF14449 Pre-toxin TG CJO90_RS22780 PF04717 Type VI secretion system, phage-baseplate injector CJO90_RS22785 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJO90_RS22790 PF00196 Bacterial regulatory proteins, luxR family CJO90_RS22790 PF00072 Response regulator receiver domain CJO90_RS22795 PF00072 Response regulator receiver domain CJO90_RS22795 PF00196 Bacterial regulatory proteins, luxR family CJO90_RS22800 PF04960 Glutaminase CJO90_RS22805 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS22810 PF00005 ABC transporter CJO90_RS22810 PF08402 TOBE domain CJO90_RS22815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS22815 PF03459 TOBE domain CJO90_RS22825 PF00990 Diguanylate cyclase, GGDEF domain CJO90_RS22825 PF03707 Bacterial signalling protein N terminal repeat CJO90_RS22825 PF00563 EAL domain CJO90_RS22845 PF06906 Protein of unknown function (DUF1272) CJO90_RS22865 PF00072 Response regulator receiver domain CJO90_RS22865 PF00486 Transcriptional regulatory protein, C terminal CJO90_RS22870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS22870 PF00512 His Kinase A (phospho-acceptor) domain CJO90_RS22870 PF00672 HAMP domain CJO90_RS22895 PF05199 GMC oxidoreductase CJO90_RS22920 PF03471 Transporter associated domain CJO90_RS22920 PF03741 Integral membrane protein TerC family CJO90_RS22925 PF03150 Di-haem cytochrome c peroxidase CJO90_RS22930 PF04185 Phosphoesterase family CJO90_RS22955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS22955 PF00989 PAS fold CJO90_RS22955 PF00072 Response regulator receiver domain CJO90_RS22955 PF00512 His Kinase A (phospho-acceptor) domain CJO90_RS22955 PF01627 Hpt domain CJO90_RS22955 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJO90_RS22970 PF00005 ABC transporter CJO90_RS22970 PF00664 ABC transporter transmembrane region CJO90_RS22970 PF03412 Peptidase C39 family CJO90_RS22975 PF00529 HlyD membrane-fusion protein of T1SS CJO90_RS22995 PF07969 Amidohydrolase family CJO90_RS23005 PF02447 GntP family permease CJO90_RS23010 PF01081 KDPG and KHG aldolase CJO90_RS23015 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CJO90_RS23020 PF00072 Response regulator receiver domain CJO90_RS23020 PF00196 Bacterial regulatory proteins, luxR family CJO90_RS23025 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase CJO90_RS23035 PF00672 HAMP domain CJO90_RS23035 PF00512 His Kinase A (phospho-acceptor) domain CJO90_RS23035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS23040 PF00486 Transcriptional regulatory protein, C terminal CJO90_RS23040 PF00072 Response regulator receiver domain CJO90_RS23045 PF13533 Biotin-lipoyl like CJO90_RS23050 PF00873 AcrB/AcrD/AcrF family CJO90_RS23055 PF00873 AcrB/AcrD/AcrF family CJO90_RS23060 PF02321 Outer membrane efflux protein CJO90_RS23070 PF03707 Bacterial signalling protein N terminal repeat CJO90_RS23070 PF00990 Diguanylate cyclase, GGDEF domain CJO90_RS23070 PF00563 EAL domain CJO90_RS23085 PF02322 Cytochrome bd terminal oxidase subunit II CJO90_RS23090 PF01654 Cytochrome bd terminal oxidase subunit I CJO90_RS23095 PF13188 PAS domain CJO90_RS23095 PF00990 Diguanylate cyclase, GGDEF domain CJO90_RS23095 PF00563 EAL domain CJO90_RS23095 PF03707 Bacterial signalling protein N terminal repeat CJO90_RS23100 PF02203 Tar ligand binding domain homologue CJO90_RS23100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO90_RS23100 PF00672 HAMP domain CJO90_RS23110 PF13396 Phospholipase_D-nuclease N-terminal CJO90_RS23110 PF13091 PLD-like domain CJO90_RS23140 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CJO90_RS23140 PF00384 Molybdopterin oxidoreductase CJO90_RS23140 PF01568 Molydopterin dinucleotide binding domain CJO90_RS23140 PF04324 BFD-like [2Fe-2S] binding domain CJO90_RS23145 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO90_RS23145 PF04324 BFD-like [2Fe-2S] binding domain CJO90_RS23145 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CJO90_RS23145 PF18267 Rubredoxin NAD+ reductase C-terminal domain CJO90_RS23145 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CJO90_RS23150 PF13806 Rieske-like [2Fe-2S] domain CJO90_RS23155 PF18267 Rubredoxin NAD+ reductase C-terminal domain CJO90_RS23155 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO90_RS23155 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CJO90_RS23155 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CJO90_RS23155 PF04324 BFD-like [2Fe-2S] binding domain CJO90_RS23160 PF07690 Major Facilitator Superfamily CJO90_RS23165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO90_RS23165 PF08447 PAS fold CJO90_RS23180 PF00296 Luciferase-like monooxygenase CJO90_RS23195 PF00561 alpha/beta hydrolase fold CJO90_RS23200 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CJO90_RS23205 PF03737 Aldolase/RraA CJO90_RS23210 PF00155 Aminotransferase class I and II CJO90_RS23215 PF03737 Aldolase/RraA CJO90_RS23215 PF00180 Isocitrate/isopropylmalate dehydrogenase CJO90_RS23225 PF03466 LysR substrate binding domain CJO90_RS23225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS23245 PF01609 Transposase DDE domain CJO90_RS23245 PF05598 Transposase domain (DUF772) CJO90_RS23255 PF13406 Transglycosylase SLT domain CJO90_RS23265 PF01654 Cytochrome bd terminal oxidase subunit I CJO90_RS23270 PF02322 Cytochrome bd terminal oxidase subunit II CJO90_RS23275 PF08546 Ketopantoate reductase PanE/ApbA C terminal CJO90_RS23275 PF02558 Ketopantoate reductase PanE/ApbA CJO90_RS23285 PF01042 Endoribonuclease L-PSP CJO90_RS23290 PF12833 Helix-turn-helix domain CJO90_RS23320 PF07804 HipA-like C-terminal domain CJO90_RS23320 PF13657 HipA N-terminal domain CJO90_RS23335 PF03466 LysR substrate binding domain CJO90_RS23335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS23340 PF02525 Flavodoxin-like fold CJO90_RS23360 PF00890 FAD binding domain CJO90_RS23360 PF02910 Fumarate reductase flavoprotein C-term CJO90_RS23365 PF01925 Sulfite exporter TauE/SafE CJO90_RS23370 PF00501 AMP-binding enzyme CJO90_RS23370 PF13193 AMP-binding enzyme C-terminal domain CJO90_RS23380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS23380 PF03466 LysR substrate binding domain CJO90_RS23385 PF01925 Sulfite exporter TauE/SafE CJO90_RS23415 PF05552 Conserved TM helix CJO90_RS23420 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CJO90_RS23425 PF00580 UvrD/REP helicase N-terminal domain CJO90_RS23425 PF13361 UvrD-like helicase C-terminal domain CJO90_RS23440 PF07690 Major Facilitator Superfamily CJO90_RS23445 PF10415 Fumarase C C-terminus CJO90_RS23445 PF00206 Lyase CJO90_RS23460 PF00381 PTS HPr component phosphorylation site CJO90_RS23460 PF00391 PEP-utilising enzyme, mobile domain CJO90_RS23460 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CJO90_RS23460 PF05524 PEP-utilising enzyme, N-terminal CJO90_RS23460 PF02896 PEP-utilising enzyme, TIM barrel domain CJO90_RS23465 PF02264 LamB porin CJO90_RS23470 PF00251 Glycosyl hydrolases family 32 N-terminal domain CJO90_RS23470 PF08244 Glycosyl hydrolases family 32 C terminal CJO90_RS23475 PF02378 Phosphotransferase system, EIIC CJO90_RS23475 PF00367 phosphotransferase system, EIIB CJO90_RS23480 PF00356 Bacterial regulatory proteins, lacI family CJO90_RS23485 PF07963 Prokaryotic N-terminal methylation motif CJO90_RS23485 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor CJO90_RS23490 PF05567 Neisseria PilC beta-propeller domain CJO90_RS23510 PF00114 Pilin (bacterial filament) CJO90_RS23510 PF07963 Prokaryotic N-terminal methylation motif CJO90_RS23515 PF02675 S-adenosylmethionine decarboxylase CJO90_RS23535 PF03994 Domain of Unknown Function (DUF350) CJO90_RS23555 PF13458 Periplasmic binding protein CJO90_RS23570 PF12399 Branched-chain amino acid ATP-binding cassette transporter CJO90_RS23570 PF00005 ABC transporter CJO90_RS23575 PF00005 ABC transporter CJO90_RS23590 PF01738 Dienelactone hydrolase family CJO90_RS23655 PF02203 Tar ligand binding domain homologue CJO90_RS23655 PF00672 HAMP domain CJO90_RS23655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO90_RS23660 PF16078 2-oxoglutarate dehydrogenase N-terminus CJO90_RS23660 PF00676 Dehydrogenase E1 component CJO90_RS23660 PF16870 2-oxoglutarate dehydrogenase C-terminal CJO90_RS23660 PF02779 Transketolase, pyrimidine binding domain CJO90_RS23665 PF01553 Acyltransferase CJO90_RS23680 PF18764 Nitrous oxide reductase propeller repeat CJO90_RS23680 PF18793 Nitrous oxide reductase propeller repeat 2 CJO90_RS23680 PF13473 Cupredoxin-like domain CJO90_RS23685 PF12801 4Fe-4S binding domain CJO90_RS23685 PF04205 FMN-binding domain CJO90_RS23690 PF05048 Periplasmic copper-binding protein (NosD) CJO90_RS23695 PF00005 ABC transporter CJO90_RS23700 PF12679 ABC-2 family transporter protein CJO90_RS23705 PF05573 NosL CJO90_RS23715 PF04829 Pre-toxin domain with VENN motif CJO90_RS23715 PF13332 Hemagglutinin repeat CJO90_RS23715 PF05860 haemagglutination activity domain CJO90_RS23715 PF04829 Pre-toxin domain with VENN motif CJO90_RS23715 PF05860 haemagglutination activity domain CJO90_RS23715 PF13332 Hemagglutinin repeat CJO90_RS23730 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CJO90_RS23730 PF08479 POTRA domain, ShlB-type CJO90_RS23730 PF17287 POTRA domain CJO90_RS23745 PF01037 Lrp/AsnC ligand binding domain CJO90_RS23760 PF07992 Pyridine nucleotide-disulphide oxidoreductase CJO90_RS23760 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CJO90_RS23765 PF08274 PhnA Zinc-Ribbon CJO90_RS23765 PF03831 PhnA domain CJO90_RS23775 PF09084 NMT1/THI5 like CJO90_RS23785 PF02325 YGGT family CJO90_RS23805 PF12706 Beta-lactamase superfamily domain CJO90_RS23810 PF04545 Sigma-70, region 4 CJO90_RS23810 PF04542 Sigma-70 region 2 CJO90_RS23810 PF04539 Sigma-70 region 3 CJO90_RS23820 PF00448 SRP54-type protein, GTPase domain CJO90_RS23825 PF00771 FHIPEP family CJO90_RS23830 PF01312 FlhB HrpN YscU SpaS Family CJO90_RS23835 PF17938 Tetracyclin repressor-like, C-terminal domain CJO90_RS23835 PF00440 Bacterial regulatory proteins, tetR family CJO90_RS23840 PF07690 Major Facilitator Superfamily CJO90_RS23845 PF01220 Dehydroquinase class II CJO90_RS23850 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CJO90_RS23850 PF08501 Shikimate dehydrogenase substrate binding domain CJO90_RS23855 PF13609 Gram-negative porin CJO90_RS23860 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CJO90_RS23860 PF01261 Xylose isomerase-like TIM barrel CJO90_RS23865 PF04344 Chemotaxis phosphatase, CheZ CJO90_RS23870 PF00072 Response regulator receiver domain CJO90_RS23875 PF00072 Response regulator receiver domain CJO90_RS23875 PF01339 CheB methylesterase CJO90_RS23880 PF03975 CheD chemotactic sensory transduction CJO90_RS23885 PF03705 CheR methyltransferase, all-alpha domain CJO90_RS23885 PF01739 CheR methyltransferase, SAM binding domain CJO90_RS23890 PF00672 HAMP domain CJO90_RS23890 PF02203 Tar ligand binding domain homologue CJO90_RS23890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CJO90_RS23895 PF01584 CheW-like domain CJO90_RS23900 PF01627 Hpt domain CJO90_RS23900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS23900 PF02895 Signal transducing histidine kinase, homodimeric domain CJO90_RS23900 PF09078 CheY binding CJO90_RS23900 PF01584 CheW-like domain CJO90_RS23905 PF00072 Response regulator receiver domain CJO90_RS23910 PF13677 Membrane MotB of proton-channel complex MotA/MotB CJO90_RS23910 PF00691 OmpA family CJO90_RS23915 PF01618 MotA/TolQ/ExbB proton channel family CJO90_RS23920 PF05280 Flagellar transcriptional activator (FlhC) CJO90_RS23925 PF05247 Flagellar transcriptional activator (FlhD) CJO90_RS23945 PF07690 Major Facilitator Superfamily CJO90_RS23950 PF12697 Alpha/beta hydrolase family CJO90_RS23955 PF13193 AMP-binding enzyme C-terminal domain CJO90_RS23955 PF00109 Beta-ketoacyl synthase, N-terminal domain CJO90_RS23955 PF02801 Beta-ketoacyl synthase, C-terminal domain CJO90_RS23955 PF00501 AMP-binding enzyme CJO90_RS23955 PF16197 Ketoacyl-synthetase C-terminal extension CJO90_RS23955 PF14765 Polyketide synthase dehydratase CJO90_RS23955 PF00668 Condensation domain CJO90_RS23955 PF08659 KR domain CJO90_RS23955 PF00550 Phosphopantetheine attachment site CJO90_RS23965 PF02515 CoA-transferase family III CJO90_RS23970 PF00501 AMP-binding enzyme CJO90_RS23970 PF00550 Phosphopantetheine attachment site CJO90_RS23970 PF00668 Condensation domain CJO90_RS23970 PF13193 AMP-binding enzyme C-terminal domain CJO90_RS23975 PF01494 FAD binding domain CJO90_RS23980 PF00202 Aminotransferase class-III CJO90_RS23985 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CJO90_RS24015 PF01266 FAD dependent oxidoreductase CJO90_RS24015 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CJO90_RS24030 PF00550 Phosphopantetheine attachment site CJO90_RS24030 PF00668 Condensation domain CJO90_RS24030 PF13193 AMP-binding enzyme C-terminal domain CJO90_RS24030 PF00501 AMP-binding enzyme CJO90_RS24050 PF01588 Putative tRNA binding domain CJO90_RS24050 PF09334 tRNA synthetases class I (M) CJO90_RS24055 PF00132 Bacterial transferase hexapeptide (six repeats) CJO90_RS24055 PF06426 Serine acetyltransferase, N-terminal CJO90_RS24065 PF00512 His Kinase A (phospho-acceptor) domain CJO90_RS24065 PF00672 HAMP domain CJO90_RS24065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS24070 PF00072 Response regulator receiver domain CJO90_RS24070 PF00486 Transcriptional regulatory protein, C terminal CJO90_RS24100 PF00224 Pyruvate kinase, barrel domain CJO90_RS24100 PF02887 Pyruvate kinase, alpha/beta domain CJO90_RS24125 PF16527 Two-component sensor protein CpxA, periplasmic domain CJO90_RS24125 PF00512 His Kinase A (phospho-acceptor) domain CJO90_RS24125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS24125 PF00672 HAMP domain CJO90_RS24130 PF00072 Response regulator receiver domain CJO90_RS24130 PF00486 Transcriptional regulatory protein, C terminal CJO90_RS24135 PF02321 Outer membrane efflux protein CJO90_RS24140 PF00529 HlyD membrane-fusion protein of T1SS CJO90_RS24140 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJO90_RS24145 PF00873 AcrB/AcrD/AcrF family CJO90_RS24150 PF13382 Adenine deaminase C-terminal domain CJO90_RS24150 PF01979 Amidohydrolase family CJO90_RS24175 PF00005 ABC transporter CJO90_RS24180 PF02687 FtsX-like permease family CJO90_RS24180 PF00005 ABC transporter CJO90_RS24180 PF12704 MacB-like periplasmic core domain CJO90_RS24200 PF01609 Transposase DDE domain CJO90_RS24200 PF05598 Transposase domain (DUF772) CJO90_RS24225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS24225 PF03466 LysR substrate binding domain CJO90_RS24235 PF00248 Aldo/keto reductase family CJO90_RS24260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS24260 PF03466 LysR substrate binding domain CJO90_RS24290 PF00561 alpha/beta hydrolase fold CJO90_RS24305 PF02543 Carbamoyltransferase N-terminus CJO90_RS24305 PF16861 Carbamoyltransferase C-terminus CJO90_RS24320 PF16861 Carbamoyltransferase C-terminus CJO90_RS24320 PF02543 Carbamoyltransferase N-terminus CJO90_RS24340 PF03358 NADPH-dependent FMN reductase CJO90_RS24370 PF01609 Transposase DDE domain CJO90_RS24370 PF05598 Transposase domain (DUF772) CJO90_RS24385 PF07732 Multicopper oxidase CJO90_RS24395 PF00115 Cytochrome C and Quinol oxidase polypeptide I CJO90_RS24400 PF00392 Bacterial regulatory proteins, gntR family CJO90_RS24400 PF07702 UTRA domain CJO90_RS24405 PF00005 ABC transporter CJO90_RS24410 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS24425 PF00990 Diguanylate cyclase, GGDEF domain CJO90_RS24425 PF00072 Response regulator receiver domain CJO90_RS24445 PF03466 LysR substrate binding domain CJO90_RS24445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS24455 PF00291 Pyridoxal-phosphate dependent enzyme CJO90_RS24460 PF13309 HTH domain CJO90_RS24460 PF08348 YheO-like PAS domain CJO90_RS24495 PF01740 STAS domain CJO90_RS24495 PF00916 Sulfate permease family CJO90_RS24510 PF09924 Uncharacterised conserved protein (DUF2156) CJO90_RS24510 PF03706 Lysylphosphatidylglycerol synthase TM region CJO90_RS24520 PF00072 Response regulator receiver domain CJO90_RS24520 PF00990 Diguanylate cyclase, GGDEF domain CJO90_RS24525 PF01694 Rhomboid family CJO90_RS24550 PF03171 2OG-Fe(II) oxygenase superfamily CJO90_RS24550 PF14226 non-haem dioxygenase in morphine synthesis N-terminal CJO90_RS24555 PF07731 Multicopper oxidase CJO90_RS24555 PF07732 Multicopper oxidase CJO90_RS24570 PF13145 PPIC-type PPIASE domain CJO90_RS24575 PF17287 POTRA domain CJO90_RS24575 PF08479 POTRA domain, ShlB-type CJO90_RS24575 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB CJO90_RS24585 PF05860 haemagglutination activity domain CJO90_RS24585 PF15526 Novel toxin 21 CJO90_RS24585 PF05594 Haemagluttinin repeat CJO90_RS24585 PF13332 Hemagglutinin repeat CJO90_RS24585 PF04829 Pre-toxin domain with VENN motif CJO90_RS24630 PF13180 PDZ domain CJO90_RS24635 PF08521 Two-component sensor kinase N-terminal CJO90_RS24635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS24635 PF00512 His Kinase A (phospho-acceptor) domain CJO90_RS24640 PF00486 Transcriptional regulatory protein, C terminal CJO90_RS24640 PF00072 Response regulator receiver domain CJO90_RS24645 PF05819 NolX protein CJO90_RS24650 PF02685 Glucokinase CJO90_RS24650 PF01418 Helix-turn-helix domain, rpiR family CJO90_RS24650 PF01380 SIS domain CJO90_RS24655 PF02685 Glucokinase CJO90_RS24660 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CJO90_RS24665 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CJO90_RS24665 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CJO90_RS24670 PF00920 Dehydratase family CJO90_RS24675 PF00582 Universal stress protein family CJO90_RS24690 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CJO90_RS24695 PF00115 Cytochrome C and Quinol oxidase polypeptide I CJO90_RS24705 PF00510 Cytochrome c oxidase subunit III CJO90_RS24730 PF07690 Major Facilitator Superfamily CJO90_RS24740 PF03466 LysR substrate binding domain CJO90_RS24740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS24745 PF00497 Bacterial extracellular solute-binding proteins, family 3 CJO90_RS24755 PF00528 Binding-protein-dependent transport system inner membrane component CJO90_RS24760 PF00491 Arginase family CJO90_RS24765 PF00196 Bacterial regulatory proteins, luxR family CJO90_RS24765 PF03472 Autoinducer binding domain CJO90_RS24780 PF00199 Catalase CJO90_RS24780 PF06628 Catalase-related immune-responsive CJO90_RS24795 PF01053 Cys/Met metabolism PLP-dependent enzyme CJO90_RS24800 PF01266 FAD dependent oxidoreductase CJO90_RS24805 PF00171 Aldehyde dehydrogenase family CJO90_RS24810 PF13458 Periplasmic binding protein CJO90_RS24815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CJO90_RS24815 PF03466 LysR substrate binding domain CJO90_RS24835 PF10106 Uncharacterized protein conserved in bacteria (DUF2345) CJO90_RS24835 PF04717 Type VI secretion system, phage-baseplate injector CJO90_RS24835 PF13296 Putative type VI secretion system Rhs element Vgr CJO90_RS24840 PF13609 Gram-negative porin CJO90_RS24845 PF07690 Major Facilitator Superfamily CJO90_RS24855 PF00873 AcrB/AcrD/AcrF family CJO90_RS24860 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CJO90_RS24865 PF02321 Outer membrane efflux protein CJO90_RS24925 PF00171 Aldehyde dehydrogenase family CJO90_RS24930 PF00180 Isocitrate/isopropylmalate dehydrogenase CJO90_RS24935 PF03328 HpcH/HpaI aldolase/citrate lyase family CJO90_RS24940 PF07690 Major Facilitator Superfamily CJO90_RS24945 PF08666 SAF domain CJO90_RS24945 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CJO90_RS24950 PF00356 Bacterial regulatory proteins, lacI family CJO90_RS24965 PF01507 Phosphoadenosine phosphosulfate reductase family CJO90_RS24965 PF11922 Domain of unknown function (DUF3440) CJO90_RS24970 PF05658 Head domain of trimeric autotransporter adhesin CJO90_RS24970 PF03895 YadA-like membrane anchor domain CJO90_RS24970 PF03895 YadA-like membrane anchor domain CJO90_RS24970 PF13018 Extended Signal Peptide of Type V secretion system CJO90_RS24970 PF05662 Coiled stalk of trimeric autotransporter adhesin CJO90_RS24970 PF13018 Extended Signal Peptide of Type V secretion system CJO90_RS24970 PF05662 Coiled stalk of trimeric autotransporter adhesin CJO90_RS24970 PF05658 Head domain of trimeric autotransporter adhesin CJO90_RS24980 PF00512 His Kinase A (phospho-acceptor) domain CJO90_RS24980 PF00072 Response regulator receiver domain CJO90_RS24980 PF09456 RcsC Alpha-Beta-Loop (ABL) CJO90_RS24980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS24985 PF00563 EAL domain CJO90_RS24985 PF00360 Phytochrome region CJO90_RS24985 PF00990 Diguanylate cyclase, GGDEF domain CJO90_RS24985 PF01590 GAF domain CJO90_RS25000 PF13276 HTH-like domain CJO90_RS25000 PF13683 Integrase core domain CJO90_RS25030 PF02560 Cyanate lyase C-terminal domain CJO90_RS25035 PF04966 Carbohydrate-selective porin, OprB family CJO90_RS25040 PF13407 Periplasmic binding protein domain CJO90_RS25045 PF00005 ABC transporter CJO90_RS25050 PF02653 Branched-chain amino acid transport system / permease component CJO90_RS25055 PF01370 NAD dependent epimerase/dehydratase family CJO90_RS25060 PF00356 Bacterial regulatory proteins, lacI family CJO90_RS25070 PF12833 Helix-turn-helix domain CJO90_RS25090 PF03929 PepSY-associated TM region CJO90_RS25105 PF01739 CheR methyltransferase, SAM binding domain CJO90_RS25160 PF00550 Phosphopantetheine attachment site CJO90_RS25170 PF03144 Elongation factor Tu domain 2 CJO90_RS25170 PF16658 Class II release factor RF3, C-terminal domain CJO90_RS25170 PF00009 Elongation factor Tu GTP binding domain CJO90_RS25195 PF00158 Sigma-54 interaction domain CJO90_RS25195 PF00072 Response regulator receiver domain CJO90_RS25195 PF02954 Bacterial regulatory protein, Fis family CJO90_RS25200 PF01590 GAF domain CJO90_RS25200 PF02954 Bacterial regulatory protein, Fis family CJO90_RS25200 PF00158 Sigma-54 interaction domain CJO90_RS25210 PF04552 Sigma-54, DNA binding domain CJO90_RS25210 PF00309 Sigma-54 factor, Activator interacting domain (AID) CJO90_RS25210 PF04963 Sigma-54 factor, core binding domain CJO90_RS25230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CJO90_RS25230 PF00512 His Kinase A (phospho-acceptor) domain CJO90_RS25240 PF00860 Permease family