locus-tag	class	description
CJO90_RS00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
CJO90_RS00010	COG0592	DNA-directed DNA polymerase activity
CJO90_RS00125	COG3781	membrane
CJO90_RS00135	COG0840	transmembrane signaling receptor activity
CJO90_RS00150	COG0765	amino acid transport
CJO90_RS00155	COG1126	abc transporter atp-binding protein
CJO90_RS00160	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CJO90_RS00180	COG0642	Histidine kinase
CJO90_RS00195	COG2814	Major facilitator Superfamily
CJO90_RS00215	COG1959	2 iron, 2 sulfur cluster binding
CJO90_RS00240	COG0745	RESPONSE REGULATOR receiver
CJO90_RS00245	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CJO90_RS00265	COG3706	GGDEF domain
CJO90_RS00265	COG4251	negative regulation of phosphorylation
CJO90_RS00265	COG2203	Gaf domain
CJO90_RS00265	COG5001	Diguanylate cyclase
CJO90_RS00275	COG2205	protein histidine kinase activity
CJO90_RS00280	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
CJO90_RS00285	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
CJO90_RS00290	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
CJO90_RS00325	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
CJO90_RS00335	COG1116	anion transmembrane transporter activity
CJO90_RS00345	COG1254	Belongs to the acylphosphatase family
CJO90_RS00355	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
CJO90_RS00360	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CJO90_RS00375	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
CJO90_RS00380	COG2894	cell division
CJO90_RS00385	COG0850	regulation of cytokinetic process
CJO90_RS00390	COG0737	Belongs to the 5'-nucleotidase family
CJO90_RS00400	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
CJO90_RS00425	COG2154	pterin-4-alpha-carbinolamine dehydratase
CJO90_RS00430	COG3186	Phenylalanine-4-hydroxylase
CJO90_RS00445	COG2423	ornithine cyclodeaminase activity
CJO90_RS00450	COG3047	cAMP biosynthetic process
CJO90_RS00465	COG0789	Transcriptional regulator
CJO90_RS00470	COG2267	carboxylic ester hydrolase activity
CJO90_RS00535	COG3530	Putative quorum-sensing-regulated virulence factor
CJO90_RS00540	COG0583	DNA-binding transcription factor activity
CJO90_RS00560	COG0445	tRNA wobble uridine modification
CJO90_RS00565	COG0357	Ribosomal RNA small subunit methyltransferase G
CJO90_RS00570	COG1192	Involved in chromosome partitioning
CJO90_RS00575	COG1475	DNA binding
CJO90_RS00585	COG0356	it plays a direct role in the translocation of protons across the membrane
CJO90_RS00595	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
CJO90_RS00600	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CJO90_RS00605	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
CJO90_RS00610	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
CJO90_RS00615	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
CJO90_RS00620	COG0355	proton-transporting ATP synthase activity, rotational mechanism
CJO90_RS00635	COG1832	CoA-binding protein
CJO90_RS00655	COG0625	glutathione transferase activity
CJO90_RS00685	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
CJO90_RS00690	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CJO90_RS00695	COG0506	proline dehydrogenase activity
CJO90_RS00695	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
CJO90_RS00695	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
CJO90_RS00700	COG0683	leucine binding
CJO90_RS00710	COG2170	ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity
CJO90_RS00715	COG1297	OPT oligopeptide transporter protein
CJO90_RS00720	COG1760	l-serine dehydratase
CJO90_RS00725	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
CJO90_RS00725	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
CJO90_RS00730	COG0509	glycine decarboxylation via glycine cleavage system
CJO90_RS00735	COG0404	The glycine cleavage system catalyzes the degradation of glycine
CJO90_RS00755	COG0210	DNA helicase
CJO90_RS00775	COG2197	response regulator
CJO90_RS00780	COG3916	Acyl-homoserine-lactone synthase
CJO90_RS00790	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CJO90_RS00795	COG2084	Dehydrogenase
CJO90_RS00800	COG3622	Belongs to the hyi family
CJO90_RS00805	COG3960	tartronate-semialdehyde synthase activity
CJO90_RS00810	COG0583	DNA-binding transcription factor activity
CJO90_RS00835	COG1301	dicarboxylic acid transport
CJO90_RS00840	COG4266	Belongs to the allantoicase family
CJO90_RS00850	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CJO90_RS00875	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CJO90_RS00890	COG0792	nuclease activity
CJO90_RS00905	COG0446	pyridine nucleotide-disulphide oxidoreductase
CJO90_RS00915	COG4654	Cytochrome c, class I
CJO90_RS00940	COG2010	Cytochrome c
CJO90_RS00945	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CJO90_RS00950	COG0737	Belongs to the 5'-nucleotidase family
CJO90_RS01010	COG3311	Transcriptional regulator
CJO90_RS01070	COG3609	addiction module antidote protein, CC2985 family
CJO90_RS01095	COG2189	Belongs to the N(4) N(6)-methyltransferase family
CJO90_RS01195	COG2916	Histone family protein nucleoid-structuring protein H-NS
CJO90_RS01205	COG3039	Transposase
CJO90_RS01295	COG2831	hemolysin activation secretion protein
CJO90_RS01305	COG3668	Plasmid stabilization system
CJO90_RS01345	COG0529	Catalyzes the synthesis of activated sulfate
CJO90_RS01385	COG0493	'glutamate synthase
CJO90_RS01400	COG3385	transposase activity
CJO90_RS01405	COG1278	Cold shock
CJO90_RS01425	COG3039	Transposase
CJO90_RS01475	COG5001	Diguanylate cyclase
CJO90_RS01475	COG4251	negative regulation of phosphorylation
CJO90_RS01475	COG3706	GGDEF domain
CJO90_RS01475	COG2203	Gaf domain
CJO90_RS01490	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CJO90_RS01500	COG1028	Short-chain dehydrogenase reductase Sdr
CJO90_RS01510	COG0840	transmembrane signaling receptor activity
CJO90_RS01535	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CJO90_RS01545	COG3284	Transcriptional regulator
CJO90_RS01555	COG4303	Ethanolamine ammonia lyase large subunit
CJO90_RS01560	COG4302	ethanolamine ammonia-lyase activity
CJO90_RS01565	COG2925	Exonuclease
CJO90_RS01680	COG1522	sequence-specific DNA binding
CJO90_RS01715	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CJO90_RS01715	COG0475	glutathione-regulated potassium exporter activity
CJO90_RS01750	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CJO90_RS01755	COG3385	transposase activity
CJO90_RS01765	COG0745	RESPONSE REGULATOR receiver
CJO90_RS01820	COG2197	response regulator
CJO90_RS01825	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
CJO90_RS01860	COG2814	Major facilitator Superfamily
CJO90_RS01865	COG0668	transmembrane transport
CJO90_RS01880	COG0745	RESPONSE REGULATOR receiver
CJO90_RS01885	COG2205	protein histidine kinase activity
CJO90_RS01920	COG2336	PFAM SpoVT AbrB
CJO90_RS01940	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
CJO90_RS01955	COG0395	ABC-type sugar transport system, permease component
CJO90_RS01965	COG3842	ATPase activity
CJO90_RS01970	COG3842	ATPase activity
CJO90_RS01980	COG1349	DNA-binding transcription factor activity
CJO90_RS02030	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
CJO90_RS02050	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
CJO90_RS02055	COG0081	regulation of translation
CJO90_RS02060	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
CJO90_RS02065	COG0222	ribosome binding
CJO90_RS02070	COG0085	RNA polymerase activity
CJO90_RS02075	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
CJO90_RS02080	COG4685	Uncharacterized protein conserved in bacteria (DUF2138)
CJO90_RS02085	COG3234	Protein of unknown function (DUF1175)
CJO90_RS02090	COG2373	Large extracellular alpha-helical protein
CJO90_RS02095	COG5445	Predicted secreted protein (DUF2300)
CJO90_RS02100	COG4676	Protein conserved in bacteria
CJO90_RS02105	COG4676	Protein conserved in bacteria
CJO90_RS02115	COG0514	ATP-dependent DNA helicase (RecQ)
CJO90_RS02120	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
CJO90_RS02125	COG0049	tRNA binding
CJO90_RS02130	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
CJO90_RS02135	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
CJO90_RS02140	COG0051	transcription antitermination factor activity, RNA binding
CJO90_RS02145	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
CJO90_RS02150	COG0088	Forms part of the polypeptide exit tunnel
CJO90_RS02155	COG0089	rRNA binding
CJO90_RS02160	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
CJO90_RS02165	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
CJO90_RS02170	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
CJO90_RS02175	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
CJO90_RS02180	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
CJO90_RS02185	COG0255	Belongs to the universal ribosomal protein uL29 family
CJO90_RS02190	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
CJO90_RS02195	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
CJO90_RS02200	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
CJO90_RS02205	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
CJO90_RS02210	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
CJO90_RS02215	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
CJO90_RS02220	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
CJO90_RS02225	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
CJO90_RS02230	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
CJO90_RS02235	COG1841	ribosomal large subunit assembly
CJO90_RS02240	COG0200	Binds to the 23S rRNA
CJO90_RS02245	COG0201	protein transport
CJO90_RS02250	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
CJO90_RS02255	COG0257	Belongs to the bacterial ribosomal protein bL36 family
CJO90_RS02260	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
CJO90_RS02265	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
CJO90_RS02270	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
CJO90_RS02275	COG0202	RNA polymerase activity
CJO90_RS02280	COG0203	ribosomal protein L17
CJO90_RS02300	COG0218	Necessary for normal cell division and for the maintenance of normal septation
CJO90_RS02310	COG1333	cytochrome c biogenesis protein
CJO90_RS02315	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CJO90_RS02335	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
CJO90_RS02340	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
CJO90_RS02355	COG1965	Belongs to the frataxin family
CJO90_RS02360	COG3385	transposase activity
CJO90_RS02395	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
CJO90_RS02400	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
CJO90_RS02405	COG0232	Belongs to the dGTPase family. Type 2 subfamily
CJO90_RS02410	COG3047	cAMP biosynthetic process
CJO90_RS02420	COG0069	glutamate synthase activity
CJO90_RS02420	COG0070	glutamate synthase
CJO90_RS02420	COG0067	glutamate synthase
CJO90_RS02435	COG1127	ABC transporter
CJO90_RS02440	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
CJO90_RS02445	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
CJO90_RS02465	COG1131	(ABC) transporter
CJO90_RS02470	COG0842	Transport permease protein
CJO90_RS02480	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
CJO90_RS02485	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
CJO90_RS02490	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
CJO90_RS02495	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CJO90_RS02500	COG0131	Imidazoleglycerol-phosphate dehydratase
CJO90_RS02505	COG2095	MarC family integral membrane protein
CJO90_RS02510	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
CJO90_RS02515	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
CJO90_RS02520	COG0107	imidazoleglycerol-phosphate synthase activity
CJO90_RS02525	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
CJO90_RS02530	COG0140	phosphoribosyl-ATP diphosphatase activity
CJO90_RS02540	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CJO90_RS02545	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CJO90_RS02550	COG0805	protein transport
CJO90_RS02555	COG3842	ATPase activity
CJO90_RS02565	COG1840	ABC-type Fe3 transport system, periplasmic component
CJO90_RS02585	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CJO90_RS02590	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CJO90_RS02595	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
CJO90_RS02600	COG1970	mechanosensitive ion channel activity
CJO90_RS02605	COG0723	plastoquinol--plastocyanin reductase activity
CJO90_RS02610	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
CJO90_RS02615	COG2857	Cytochrome c1
CJO90_RS02620	COG0625	glutathione transferase activity
CJO90_RS02625	COG2969	positive regulation of protein catabolic process
CJO90_RS02650	COG0405	Gamma-glutamyltransferase
CJO90_RS02655	COG4774	siderophore transport
CJO90_RS02660	COG3712	iron ion homeostasis
CJO90_RS02670	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
CJO90_RS02685	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
CJO90_RS02690	COG0488	(ABC) transporter
CJO90_RS02710	COG2943	transferase activity, transferring hexosyl groups
CJO90_RS02710	COG3416	Protein conserved in bacteria
CJO90_RS02715	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
CJO90_RS02730	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
CJO90_RS02735	COG2890	protein-(glutamine-N5) methyltransferase activity
CJO90_RS02745	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
CJO90_RS02750	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
CJO90_RS02760	COG0012	GTP binding
CJO90_RS02785	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CJO90_RS02795	COG0604	alcohol dehydrogenase
CJO90_RS02805	COG1289	transmembrane transporter activity
CJO90_RS02820	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
CJO90_RS02830	COG0134	indole-3-glycerol-phosphate synthase activity
CJO90_RS02835	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CJO90_RS02845	COG0512	Glutamine amidotransferase of anthranilate synthase
CJO90_RS02855	COG0546	phosphoglycolate phosphatase activity
CJO90_RS02860	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CJO90_RS02865	COG2967	ApaG domain
CJO90_RS02885	COG2050	protein possibly involved in aromatic compounds catabolism
CJO90_RS02890	COG1024	Enoyl-CoA hydratase
CJO90_RS02895	COG1024	Enoyl-CoA hydratase
CJO90_RS02925	COG1473	amidohydrolase
CJO90_RS02935	COG0601	transmembrane transport
CJO90_RS02940	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CJO90_RS02945	COG0444	Belongs to the ABC transporter superfamily
CJO90_RS02950	COG4608	Belongs to the ABC transporter superfamily
CJO90_RS02955	COG3385	transposase activity
CJO90_RS02965	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CJO90_RS02965	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CJO90_RS02970	COG1105	Belongs to the carbohydrate kinase PfkB family
CJO90_RS02975	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CJO90_RS02975	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
CJO90_RS02980	COG1609	Transcriptional regulator
CJO90_RS02985	COG0243	molybdopterin cofactor binding
CJO90_RS02995	COG0318	PFAM AMP-dependent synthetase and ligase
CJO90_RS03000	COG0477	Major facilitator Superfamily
CJO90_RS03005	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CJO90_RS03010	COG2941	Oxygenase that introduces the hydroxyl group at carbon five of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol resulting in the formation of 2-nonaprenyl-3-methyl-5-hydroxy-6-methoxy-1,4- benzoquinol
CJO90_RS03015	COG2001	Belongs to the MraZ family
CJO90_RS03020	COG0275	rRNA processing
CJO90_RS03035	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
CJO90_RS03040	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
CJO90_RS03045	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CJO90_RS03050	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
CJO90_RS03060	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
CJO90_RS03065	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
CJO90_RS03070	COG1181	Belongs to the D-alanine--D-alanine ligase family
CJO90_RS03075	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
CJO90_RS03090	COG0678	peroxiredoxin activity
CJO90_RS03095	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
CJO90_RS03105	COG0739	heme binding
CJO90_RS03110	COG0653	protein targeting
CJO90_RS03115	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
CJO90_RS03125	COG0494	nUDIX hydrolase
CJO90_RS03130	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
CJO90_RS03135	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
CJO90_RS03140	COG0237	dephospho-CoA kinase activity
CJO90_RS03150	COG1459	type II secretion system
CJO90_RS03160	COG4536	flavin adenine dinucleotide binding
CJO90_RS03170	COG0142	geranyltranstransferase activity
CJO90_RS03175	COG0261	This protein binds to 23S rRNA in the presence of protein L20
CJO90_RS03180	COG0211	Belongs to the bacterial ribosomal protein bL27 family
CJO90_RS03185	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
CJO90_RS03190	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
CJO90_RS03200	COG0494	nUDIX hydrolase
CJO90_RS03205	COG0442	prolyl-tRNA aminoacylation
CJO90_RS03210	COG0741	lytic transglycosylase activity
CJO90_RS03220	COG2095	MarC family integral membrane protein
CJO90_RS03225	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
CJO90_RS03230	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CJO90_RS03390	COG3039	Transposase
CJO90_RS03425	COG1522	sequence-specific DNA binding
CJO90_RS03435	COG0840	transmembrane signaling receptor activity
CJO90_RS03480	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CJO90_RS03485	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
CJO90_RS03495	COG2264	protein methyltransferase activity
CJO90_RS03505	COG0511	ligase activity, forming carbon-carbon bonds
CJO90_RS03510	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
CJO90_RS03515	COG3118	belongs to the thioredoxin family
CJO90_RS03525	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
CJO90_RS03530	COG3150	esterase
CJO90_RS03535	COG3161	chorismate lyase activity
CJO90_RS03540	COG0557	exoribonuclease II activity
CJO90_RS03550	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
CJO90_RS03555	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CJO90_RS03570	COG0284	orotidine-5'-phosphate decarboxylase activity
CJO90_RS03580	COG1058	Belongs to the CinA family
CJO90_RS03580	COG1546	Belongs to the CinA family
CJO90_RS03585	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
CJO90_RS03595	COG0281	malic enzyme
CJO90_RS03595	COG0280	phosphate acetyltransferase
CJO90_RS03615	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CJO90_RS03625	COG0583	DNA-binding transcription factor activity
CJO90_RS03630	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CJO90_RS03645	COG1129	ABC transporter
CJO90_RS03665	COG1028	Short-chain dehydrogenase reductase Sdr
CJO90_RS03670	COG0800	Aldolase
CJO90_RS03675	COG4948	Mandelate Racemase Muconate Lactonizing
CJO90_RS03680	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
CJO90_RS03685	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CJO90_RS03690	COG0583	DNA-binding transcription factor activity
CJO90_RS03695	COG0735	belongs to the Fur family
CJO90_RS03700	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CJO90_RS03705	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
CJO90_RS03710	COG0495	leucyl-tRNA aminoacylation
CJO90_RS03720	COG1466	dna polymerase III delta subunit
CJO90_RS03725	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
CJO90_RS03730	COG1981	membrane
CJO90_RS03740	COG2204	response regulator
CJO90_RS03745	COG4191	Histidine kinase
CJO90_RS03750	COG4191	Histidine kinase
CJO90_RS03775	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
CJO90_RS03815	COG0482	sulfurtransferase activity
CJO90_RS03820	COG0069	glutamate synthase activity
CJO90_RS03825	COG0625	glutathione transferase activity
CJO90_RS03835	COG3038	cytochrome b561
CJO90_RS03840	COG2353	YceI-like domain
CJO90_RS03845	COG2353	YceI-like domain
CJO90_RS03850	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CJO90_RS03855	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CJO90_RS03860	COG1862	Preprotein translocase
CJO90_RS03865	COG0343	queuine tRNA-ribosyltransferase activity
CJO90_RS03870	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
CJO90_RS03875	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
CJO90_RS03915	COG1522	sequence-specific DNA binding
CJO90_RS03920	COG1473	amidohydrolase
CJO90_RS03925	COG1819	glycosyl
CJO90_RS03950	COG3039	Transposase
CJO90_RS03980	COG1278	Cold shock
CJO90_RS04070	COG0783	Belongs to the Dps family
CJO90_RS04075	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
CJO90_RS04135	COG0386	Belongs to the glutathione peroxidase family
CJO90_RS04155	COG1346	cytolysis
CJO90_RS04160	COG1380	Effector of murein hydrolase LrgA
CJO90_RS04165	COG0247	lactate metabolic process
CJO90_RS04170	COG0277	FAD linked oxidase domain protein
CJO90_RS04175	COG0277	FAD linked oxidase domain protein
CJO90_RS04180	COG0583	DNA-binding transcription factor activity
CJO90_RS04185	COG0277	FAD linked oxidase domain protein
CJO90_RS04190	COG2096	Adenosyltransferase
CJO90_RS04195	COG0668	transmembrane transport
CJO90_RS04205	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
CJO90_RS04210	COG0312	modulator of DNA gyrase
CJO90_RS04215	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CJO90_RS04225	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
CJO90_RS04240	COG1404	Belongs to the peptidase S8 family
CJO90_RS04250	COG0497	DNA recombination
CJO90_RS04255	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
CJO90_RS04260	COG1420	regulation of RNA biosynthetic process
CJO90_RS04270	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
CJO90_RS04275	COG2986	histidine ammonia-lyase
CJO90_RS04280	COG0010	Belongs to the arginase family
CJO90_RS04285	COG1228	amidohydrolase
CJO90_RS04290	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
CJO90_RS04310	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
CJO90_RS04320	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CJO90_RS04325	COG0443	Heat shock 70 kDa protein
CJO90_RS04330	COG0484	heat shock protein binding
CJO90_RS04335	COG0512	Glutamine amidotransferase of anthranilate synthase
CJO90_RS04335	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
CJO90_RS04340	COG1122	ATPase activity
CJO90_RS04345	COG4662	Binding-protein-dependent transport system inner membrane component
CJO90_RS04350	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
CJO90_RS04360	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
CJO90_RS04375	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
CJO90_RS04380	COG0628	permease
CJO90_RS04385	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
CJO90_RS04400	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CJO90_RS04400	COG2169	Transcriptional regulator
CJO90_RS04420	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CJO90_RS04420	COG2169	Transcriptional regulator
CJO90_RS04425	COG0456	acetyltransferase
CJO90_RS04430	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
CJO90_RS04435	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
CJO90_RS04440	COG3008	intermembrane lipid transfer
CJO90_RS04455	COG0586	Pfam SNARE associated Golgi protein
CJO90_RS04465	COG0728	peptidoglycan biosynthetic process
CJO90_RS04470	COG0268	Binds directly to 16S ribosomal RNA
CJO90_RS04480	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
CJO90_RS04490	COG0137	argininosuccinate synthase activity
CJO90_RS04495	COG3123	guanosine phosphorylase activity
CJO90_RS04505	COG0812	UDP-N-acetylmuramate dehydrogenase activity
CJO90_RS04510	COG1666	GTP binding
CJO90_RS04525	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
CJO90_RS04535	COG4974	Belongs to the 'phage' integrase family
CJO90_RS04550	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
CJO90_RS04555	COG0802	atpase or kinase
CJO90_RS04560	COG0860	N-Acetylmuramoyl-L-alanine amidase
CJO90_RS04570	COG0583	DNA-binding transcription factor activity
CJO90_RS04590	COG0563	adenylate kinase activity
CJO90_RS04595	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
CJO90_RS04600	COG2835	tetraacyldisaccharide 4'-kinase activity
CJO90_RS04605	COG1663	tetraacyldisaccharide 4'-kinase activity
CJO90_RS04615	COG0811	peptide transport
CJO90_RS04620	COG1570	exodeoxyribonuclease VII activity
CJO90_RS04625	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
CJO90_RS04670	COG2610	gluconate transmembrane transporter activity
CJO90_RS04725	COG1473	amidohydrolase
CJO90_RS04760	COG1028	Short-chain dehydrogenase reductase Sdr
CJO90_RS04765	COG2321	neutral zinc metallopeptidase
CJO90_RS04780	COG2259	Doxx family
CJO90_RS04790	COG0583	DNA-binding transcription factor activity
CJO90_RS04795	COG0583	DNA-binding transcription factor activity
CJO90_RS04815	COG1858	cytochrome C peroxidase
CJO90_RS04835	COG0582	viral genome integration into host DNA
CJO90_RS04915	COG1278	Cold shock
CJO90_RS04920	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
CJO90_RS04925	COG0542	response to heat
CJO90_RS04930	COG0756	dUTP diphosphatase activity
CJO90_RS04935	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CJO90_RS04940	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CJO90_RS04950	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
CJO90_RS04955	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
CJO90_RS04960	COG0196	riboflavin kinase activity
CJO90_RS04965	COG0784	Response regulator, receiver
CJO90_RS04965	COG5002	protein histidine kinase activity
CJO90_RS04970	COG2197	response regulator
CJO90_RS04975	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CJO90_RS04980	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
CJO90_RS04980	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CJO90_RS04990	COG3264	Mechanosensitive ion channel
CJO90_RS04990	COG1511	domain protein
CJO90_RS05000	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
CJO90_RS05010	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
CJO90_RS05015	COG0267	Belongs to the bacterial ribosomal protein bL33 family
CJO90_RS05020	COG0227	Belongs to the bacterial ribosomal protein bL28 family
CJO90_RS05025	COG2003	Belongs to the UPF0758 family
CJO90_RS05030	COG1047	Peptidyl-prolyl cis-trans
CJO90_RS05035	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
CJO90_RS05070	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CJO90_RS05105	COG2084	Dehydrogenase
CJO90_RS05115	COG0583	DNA-binding transcription factor activity
CJO90_RS05125	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CJO90_RS05135	COG0175	sulfate reduction
CJO90_RS05145	COG2895	sulfate adenylyltransferase (ATP) activity
CJO90_RS05175	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
CJO90_RS05190	COG3385	transposase activity
CJO90_RS05195	COG0129	dihydroxy-acid dehydratase activity
CJO90_RS05200	COG0583	DNA-binding transcription factor activity
CJO90_RS05205	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
CJO90_RS05235	COG4206	TonB-dependent receptor
CJO90_RS05245	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
CJO90_RS05250	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
CJO90_RS05255	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
CJO90_RS05265	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CJO90_RS05275	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
CJO90_RS05285	COG1492	cobalamin metabolic process
CJO90_RS05300	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
CJO90_RS05305	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
CJO90_RS05320	COG2911	Protein conserved in bacteria
CJO90_RS05330	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CJO90_RS05330	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CJO90_RS05335	COG2885	chlorophyll binding
CJO90_RS05335	COG3047	cAMP biosynthetic process
CJO90_RS05340	COG0489	protein tyrosine kinase activity
CJO90_RS05370	COG0243	molybdopterin cofactor binding
CJO90_RS05370	COG3383	formate dehydrogenase (NAD+) activity
CJO90_RS05375	COG0437	4 iron, 4 sulfur cluster binding
CJO90_RS05395	COG2032	superoxide dismutase activity
CJO90_RS05400	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
CJO90_RS05405	COG0717	Belongs to the dCTP deaminase family
CJO90_RS05450	COG0165	Argininosuccinate lyase
CJO90_RS05480	COG0181	hydroxymethylbilane synthase activity
CJO90_RS05505	COG2271	Major facilitator Superfamily
CJO90_RS05520	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
CJO90_RS05560	COG0492	ferredoxin-NADP+ reductase activity
CJO90_RS05565	COG1674	ftsk spoiiie
CJO90_RS05570	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
CJO90_RS05585	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
CJO90_RS05595	COG0582	viral genome integration into host DNA
CJO90_RS05725	COG0556	nucleotide-excision repair
CJO90_RS05760	COG5377	YqaJ viral recombinase family
CJO90_RS05855	COG1846	Transcriptional regulator
CJO90_RS05865	COG2814	Major facilitator Superfamily
CJO90_RS05875	COG1028	Short-chain dehydrogenase reductase Sdr
CJO90_RS05880	COG1522	sequence-specific DNA binding
CJO90_RS05890	COG1522	sequence-specific DNA binding
CJO90_RS05900	COG2814	Major facilitator Superfamily
CJO90_RS05915	COG2197	response regulator
CJO90_RS05970	COG2165	general secretion pathway protein
CJO90_RS06040	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CJO90_RS06085	COG1253	flavin adenine dinucleotide binding
CJO90_RS06140	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CJO90_RS06155	COG0765	amino acid transport
CJO90_RS06160	COG0765	amino acid transport
CJO90_RS06165	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CJO90_RS06175	COG1414	Transcriptional regulator
CJO90_RS06185	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
CJO90_RS06190	COG0183	Belongs to the thiolase family
CJO90_RS06200	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CJO90_RS06205	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CJO90_RS06220	COG0411	ABC transporter
CJO90_RS06230	COG0683	leucine binding
CJO90_RS06245	COG2342	PFAM TM1410 hypothetical-related protein
CJO90_RS06255	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
CJO90_RS06270	COG0525	valine-tRNA ligase activity
CJO90_RS06275	COG0210	DNA helicase
CJO90_RS06285	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
CJO90_RS06295	COG1611	Belongs to the LOG family
CJO90_RS06300	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CJO90_RS06300	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CJO90_RS06305	COG1252	NADH dehydrogenase
CJO90_RS06310	COG0412	Dienelactone hydrolase
CJO90_RS06320	COG3385	transposase activity
CJO90_RS06340	COG1722	exodeoxyribonuclease VII activity
CJO90_RS06345	COG0142	geranyltranstransferase activity
CJO90_RS06355	COG1469	GTP cyclohydrolase I activity
CJO90_RS06360	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
CJO90_RS06365	COG2081	HI0933 family
CJO90_RS06370	COG1610	YqeY-like protein
CJO90_RS06390	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CJO90_RS06400	COG0426	domain, Protein
CJO90_RS06400	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CJO90_RS06405	COG0513	Belongs to the DEAD box helicase family
CJO90_RS06410	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CJO90_RS06415	COG0583	DNA-binding transcription factor activity
CJO90_RS06430	COG1054	Belongs to the UPF0176 family
CJO90_RS06450	COG0463	Glycosyl transferase, family 2
CJO90_RS06460	COG1132	(ABC) transporter
CJO90_RS06480	COG1530	ribonuclease E activity
CJO90_RS06485	COG0424	maF-like protein
CJO90_RS06490	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
CJO90_RS06495	COG0799	negative regulation of ribosome biogenesis
CJO90_RS06505	COG0408	coproporphyrinogen oxidase activity
CJO90_RS06510	COG0151	Belongs to the GarS family
CJO90_RS06515	COG0217	transcriptional regulatory protein
CJO90_RS06520	COG0433	COG0433 Predicted ATPase
CJO90_RS06525	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
CJO90_RS06530	COG0697	spore germination
CJO90_RS06535	COG1028	Short-chain dehydrogenase reductase Sdr
CJO90_RS06540	COG1803	Methylglyoxal synthase
CJO90_RS06590	COG4603	Belongs to the binding-protein-dependent transport system permease family
CJO90_RS06595	COG3845	ABC transporter
CJO90_RS06600	COG2814	Major facilitator Superfamily
CJO90_RS06605	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
CJO90_RS06610	COG1984	allophanate hydrolase subunit 2
CJO90_RS06615	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
CJO90_RS06630	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
CJO90_RS06635	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
CJO90_RS06650	COG1234	tRNA 3'-trailer cleavage
CJO90_RS06660	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CJO90_RS06665	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
CJO90_RS06670	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
CJO90_RS06685	COG1561	YicC-like family, N-terminal region
CJO90_RS06690	COG0194	GDP metabolic process
CJO90_RS06695	COG1758	RNA polymerase activity
CJO90_RS06700	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CJO90_RS06730	COG1652	LysM domain
CJO90_RS06740	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CJO90_RS06765	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CJO90_RS06770	COG3842	ATPase activity
CJO90_RS06780	COG1733	regulation of RNA biosynthetic process
CJO90_RS06790	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CJO90_RS06815	COG0246	Mannitol dehydrogenase
CJO90_RS06820	COG1070	Carbohydrate kinase
CJO90_RS06825	COG2390	Transcriptional regulator
CJO90_RS06835	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
CJO90_RS06840	COG0308	aminopeptidase N
CJO90_RS06850	COG0280	phosphate acetyltransferase
CJO90_RS06850	COG0281	malic enzyme
CJO90_RS06860	COG3195	allantoin biosynthetic process
CJO90_RS06860	COG3648	Uricase
CJO90_RS06875	COG2233	PERMEase
CJO90_RS06885	COG2351	hydroxyisourate hydrolase activity
CJO90_RS06900	COG3039	Transposase
CJO90_RS06905	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CJO90_RS06920	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CJO90_RS06925	COG1012	belongs to the aldehyde dehydrogenase family
CJO90_RS06935	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CJO90_RS06945	COG1126	abc transporter atp-binding protein
CJO90_RS06950	COG0765	amino acid transport
CJO90_RS06955	COG0765	amino acid transport
CJO90_RS06965	COG2186	Transcriptional regulator
CJO90_RS06985	COG2119	membrane
CJO90_RS06990	COG0402	S-adenosylhomocysteine deaminase activity
CJO90_RS06995	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
CJO90_RS07005	COG1529	Aldehyde oxidase and xanthine dehydrogenase
CJO90_RS07030	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
CJO90_RS07055	COG1309	transcriptional regulator
CJO90_RS07065	COG0438	transferase activity, transferring glycosyl groups
CJO90_RS07100	COG0028	Belongs to the TPP enzyme family
CJO90_RS07110	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
CJO90_RS07115	COG0688	phosphatidylethanolamine metabolic process
CJO90_RS07120	COG1183	phosphatidylcholine synthase activity
CJO90_RS07125	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CJO90_RS07135	COG0683	leucine binding
CJO90_RS07140	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
CJO90_RS07145	COG1185	polyribonucleotide nucleotidyltransferase activity
CJO90_RS07160	COG0149	triose-phosphate isomerase activity
CJO90_RS07165	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CJO90_RS07175	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CJO90_RS07180	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CJO90_RS07185	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CJO90_RS07190	COG0649	NAD binding
CJO90_RS07205	COG1034	ATP synthesis coupled electron transport
CJO90_RS07210	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
CJO90_RS07215	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CJO90_RS07225	COG0713	ATP synthesis coupled electron transport
CJO90_RS07240	COG1007	ATP synthesis coupled electron transport
CJO90_RS07260	COG1960	acyl-CoA dehydrogenase activity
CJO90_RS07265	COG1960	acyl-CoA dehydrogenase activity
CJO90_RS07270	COG1012	belongs to the aldehyde dehydrogenase family
CJO90_RS07270	COG2030	dehydratase
CJO90_RS07305	COG0829	nickel cation binding
CJO90_RS07310	COG0831	urea catabolic process
CJO90_RS07320	COG0832	Belongs to the urease beta subunit family
CJO90_RS07325	COG0804	urea catabolic process
CJO90_RS07330	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
CJO90_RS07335	COG0830	nickel cation binding
CJO90_RS07340	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
CJO90_RS07365	COG0625	glutathione transferase activity
CJO90_RS07370	COG1960	acyl-CoA dehydrogenase activity
CJO90_RS07400	COG1024	Enoyl-CoA hydratase
CJO90_RS07405	COG1250	3-hydroxyacyl-CoA dehydrogenase
CJO90_RS07410	COG0625	glutathione transferase activity
CJO90_RS07415	COG0436	Aminotransferase
CJO90_RS07425	COG3022	response to hydroperoxide
CJO90_RS07430	COG2866	Carboxypeptidase
CJO90_RS07440	COG0747	negative chemotaxis
CJO90_RS07455	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
CJO90_RS07485	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CJO90_RS07495	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
CJO90_RS07500	COG1053	succinate dehydrogenase
CJO90_RS07505	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CJO90_RS07510	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
CJO90_RS07515	COG0372	Belongs to the citrate synthase family
CJO90_RS07520	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
CJO90_RS07525	COG0066	3-isopropylmalate dehydratase activity
CJO90_RS07530	COG0473	3-isopropylmalate dehydrogenase activity
CJO90_RS07545	COG0101	tRNA pseudouridine synthase activity
CJO90_RS07550	COG0135	phosphoribosylanthranilate isomerase activity
CJO90_RS07555	COG0133	tryptophan synthase activity
CJO90_RS07565	COG0159	tryptophan synthase activity
CJO90_RS07570	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
CJO90_RS07575	COG0285	dihydrofolate synthase activity
CJO90_RS07595	COG0842	Transport permease protein
CJO90_RS07600	COG1131	(ABC) transporter
CJO90_RS07630	COG3193	protein, possibly involved in utilization of glycolate and propanediol
CJO90_RS07675	COG1301	dicarboxylic acid transport
CJO90_RS07680	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
CJO90_RS07695	COG0697	spore germination
CJO90_RS07700	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CJO90_RS07705	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CJO90_RS07715	COG3039	Transposase
CJO90_RS07725	COG2197	response regulator
CJO90_RS07770	COG0747	negative chemotaxis
CJO90_RS07790	COG0601	transmembrane transport
CJO90_RS07795	COG2072	flavoprotein involved in K transport
CJO90_RS07840	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CJO90_RS07850	COG0582	viral genome integration into host DNA
CJO90_RS07880	COG0656	L-ascorbic acid biosynthetic process
CJO90_RS07885	COG2304	oxidoreductase activity
CJO90_RS07900	COG0589	response to stress
CJO90_RS07935	COG0328	RNA-DNA hybrid ribonuclease activity
CJO90_RS07940	COG2226	methyltransferase
CJO90_RS07945	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CJO90_RS07950	COG1388	LysM domain
CJO90_RS07950	COG0741	lytic transglycosylase activity
CJO90_RS07955	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CJO90_RS07960	COG0505	Belongs to the CarA family
CJO90_RS07970	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
CJO90_RS07975	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CJO90_RS07985	COG1534	Rna-binding protein
CJO90_RS07990	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
CJO90_RS07995	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CJO90_RS08005	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CJO90_RS08010	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
CJO90_RS08015	COG0573	inorganic phosphate transmembrane transporter activity
CJO90_RS08020	COG0581	inorganic phosphate transmembrane transporter activity
CJO90_RS08025	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
CJO90_RS08035	COG0745	RESPONSE REGULATOR receiver
CJO90_RS08045	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
CJO90_RS08050	COG0248	Ppx GppA phosphatase
CJO90_RS08075	COG0730	response to heat
CJO90_RS08085	COG0640	Transcriptional regulator
CJO90_RS08095	COG3300	MHYT domain
CJO90_RS08095	COG5001	Diguanylate cyclase
CJO90_RS08230	COG0277	FAD linked oxidase domain protein
CJO90_RS08245	COG1295	ribonuclease BN
CJO90_RS08270	COG0477	Major facilitator Superfamily
CJO90_RS08275	COG0545	Peptidyl-prolyl cis-trans isomerase
CJO90_RS08280	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
CJO90_RS08290	COG1028	Short-chain dehydrogenase reductase Sdr
CJO90_RS08295	COG4566	intracellular signal transduction
CJO90_RS08310	COG1028	Short-chain dehydrogenase reductase Sdr
CJO90_RS08320	COG0251	oxidation-reduction process
CJO90_RS08325	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CJO90_RS08335	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
CJO90_RS08340	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
CJO90_RS08345	COG0291	Belongs to the bacterial ribosomal protein bL35 family
CJO90_RS08350	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
CJO90_RS08355	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
CJO90_RS08360	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CJO90_RS08360	COG0072	phenylalanine-tRNA ligase activity
CJO90_RS08365	COG0776	regulation of translation
CJO90_RS08395	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CJO90_RS08400	COG0531	amino acid
CJO90_RS08420	COG1846	Transcriptional regulator
CJO90_RS08430	COG0402	S-adenosylhomocysteine deaminase activity
CJO90_RS08435	COG0339	signal peptide processing
CJO90_RS08440	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
CJO90_RS08475	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CJO90_RS08490	COG0123	including yeast histone deacetylase and acetoin utilization protein
CJO90_RS08515	COG1414	Transcriptional regulator
CJO90_RS08540	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
CJO90_RS08545	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
CJO90_RS08565	COG0167	dihydroorotate dehydrogenase activity
CJO90_RS08575	COG3158	transport of potassium into the cell
CJO90_RS08585	COG2183	response to ionizing radiation
CJO90_RS08600	COG1199	ATP-dependent helicase activity
CJO90_RS08610	COG0564	pseudouridine synthase activity
CJO90_RS08625	COG3243	poly(R)-hydroxyalkanoic acid synthase
CJO90_RS08630	COG0183	Belongs to the thiolase family
CJO90_RS08635	COG1028	Short-chain dehydrogenase reductase Sdr
CJO90_RS08645	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CJO90_RS08650	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CJO90_RS08655	COG0183	Belongs to the thiolase family
CJO90_RS08670	COG0560	Phosphoserine phosphatase
CJO90_RS08680	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CJO90_RS08685	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
CJO90_RS08690	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
CJO90_RS08695	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CJO90_RS08700	COG0450	alkyl hydroperoxide reductase
CJO90_RS08730	COG1562	ergosterol biosynthetic process
CJO90_RS08735	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CJO90_RS08755	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CJO90_RS08755	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
CJO90_RS08760	COG0544	peptidyl-prolyl cis-trans isomerase activity
CJO90_RS08765	COG0740	serine-type endopeptidase activity
CJO90_RS08770	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
CJO90_RS08775	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
CJO90_RS08780	COG0776	regulation of translation
CJO90_RS08795	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CJO90_RS08800	COG3385	transposase activity
CJO90_RS08815	COG4181	ATPase activity
CJO90_RS08820	COG0166	Belongs to the GPI family
CJO90_RS08825	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CJO90_RS08835	COG0047	phosphoribosylformylglycinamidine synthase activity
CJO90_RS08835	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CJO90_RS08855	COG0535	radical SAM domain protein
CJO90_RS08875	COG0583	DNA-binding transcription factor activity
CJO90_RS08880	COG1028	Short-chain dehydrogenase reductase Sdr
CJO90_RS08890	COG1176	ABC-type spermidine putrescine transport system, permease component I
CJO90_RS08900	COG3842	ATPase activity
CJO90_RS08905	COG0642	Histidine kinase
CJO90_RS08915	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CJO90_RS08920	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
CJO90_RS08945	COG1126	abc transporter atp-binding protein
CJO90_RS08950	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CJO90_RS08960	COG2917	probably involved in intracellular septation
CJO90_RS08965	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CJO90_RS08970	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
CJO90_RS08975	COG0318	PFAM AMP-dependent synthetase and ligase
CJO90_RS08985	COG0559	Belongs to the binding-protein-dependent transport system permease family
CJO90_RS09015	COG0833	amino acid
CJO90_RS09020	COG0833	amino acid
CJO90_RS09030	COG1335	isochorismatase
CJO90_RS09035	COG0183	Belongs to the thiolase family
CJO90_RS09040	COG1960	acyl-CoA dehydrogenase activity
CJO90_RS09045	COG1028	Short-chain dehydrogenase reductase Sdr
CJO90_RS09060	COG2130	NADP-dependent
CJO90_RS09080	COG0596	Alpha beta hydrolase
CJO90_RS09115	COG2831	hemolysin activation secretion protein
CJO90_RS09135	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
CJO90_RS09140	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
CJO90_RS09145	COG0470	DNA polymerase III
CJO90_RS09155	COG0084	hydrolase, TatD family'
CJO90_RS09165	COG1262	PFAM Formylglycine-generating sulfatase enzyme
CJO90_RS09170	COG1609	Transcriptional regulator
CJO90_RS09175	COG1840	ABC-type Fe3 transport system, periplasmic component
CJO90_RS09185	COG4208	sulfate ABC transporter
CJO90_RS09190	COG3842	ATPase activity
CJO90_RS09195	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
CJO90_RS09200	COG3023	N-Acetylmuramoyl-L-alanine amidase
CJO90_RS09235	COG0038	chloride channel
CJO90_RS09240	COG2226	methyltransferase
CJO90_RS09250	COG2226	methyltransferase
CJO90_RS09250	COG3433	isochorismatase activity
CJO90_RS09250	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CJO90_RS09255	COG4771	TonB-dependent receptor
CJO90_RS09260	COG1132	(ABC) transporter
CJO90_RS09260	COG2375	cellular response to nickel ion
CJO90_RS09275	COG2226	methyltransferase
CJO90_RS09275	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CJO90_RS09275	COG3433	isochorismatase activity
CJO90_RS09295	COG0456	acetyltransferase
CJO90_RS09345	COG0179	Fumarylacetoacetate (FAA) hydrolase
CJO90_RS09390	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
CJO90_RS09420	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
CJO90_RS09470	COG2814	Major facilitator Superfamily
CJO90_RS09495	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CJO90_RS09505	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
CJO90_RS09550	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
CJO90_RS09555	COG0156	8-amino-7-oxononanoate synthase activity
CJO90_RS09590	COG3045	CreA protein
CJO90_RS09625	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
CJO90_RS09640	COG0840	transmembrane signaling receptor activity
CJO90_RS09650	COG3387	PFAM Glycoside hydrolase 15-related
CJO90_RS09675	COG0488	(ABC) transporter
CJO90_RS09680	COG1619	proteins homologs of microcin C7 resistance protein MccF
CJO90_RS09690	COG0720	synthase
CJO90_RS09695	COG0602	queuosine metabolic process
CJO90_RS09715	COG3550	peptidyl-serine autophosphorylation
CJO90_RS09735	COG3485	protocatechuate 3,4-dioxygenase
CJO90_RS09740	COG3485	protocatechuate 3,4-dioxygenase
CJO90_RS09745	COG0583	DNA-binding transcription factor activity
CJO90_RS09795	COG0518	GMP synthase (glutamine-hydrolyzing) activity
CJO90_RS09795	COG0519	Catalyzes the synthesis of GMP from XMP
CJO90_RS09810	COG0697	spore germination
CJO90_RS09820	COG2914	Belongs to the UPF0125 (RnfH) family
CJO90_RS09825	COG2867	negative regulation of translational initiation
CJO90_RS09830	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
CJO90_RS09835	COG0330	HflC and HflK could
CJO90_RS09850	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
CJO90_RS09855	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CJO90_RS09860	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
CJO90_RS09865	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CJO90_RS09870	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CJO90_RS09875	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
CJO90_RS09880	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CJO90_RS09900	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
CJO90_RS09905	COG0575	Belongs to the CDS family
CJO90_RS09910	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
CJO90_RS09915	COG0233	cytoplasmic translational termination
CJO90_RS09920	COG0528	UMP kinase activity
CJO90_RS09925	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
CJO90_RS09930	COG0052	Belongs to the universal ribosomal protein uS2 family
CJO90_RS09935	COG0024	Methionine aminopeptidase
CJO90_RS09940	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
CJO90_RS09945	COG1187	pseudouridine synthase activity
CJO90_RS09955	COG0242	peptide deformylase activity
CJO90_RS09960	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
CJO90_RS09975	COG0596	Alpha beta hydrolase
CJO90_RS09990	COG2171	N-acyltransferase activity
CJO90_RS10000	COG1393	Belongs to the ArsC family
CJO90_RS10005	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CJO90_RS10015	COG2890	protein-(glutamine-N5) methyltransferase activity
CJO90_RS10020	COG0302	gtp cyclohydrolase
CJO90_RS10045	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CJO90_RS10050	COG0601	transmembrane transport
CJO90_RS10055	COG0747	negative chemotaxis
CJO90_RS10060	COG4172	Belongs to the ABC transporter superfamily
CJO90_RS10075	COG0488	(ABC) transporter
CJO90_RS10085	COG1683	Conserved Protein
CJO90_RS10090	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
CJO90_RS10100	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CJO90_RS10105	COG0477	Major facilitator Superfamily
CJO90_RS10110	COG1573	uracil-dna glycosylase
CJO90_RS10115	COG0456	acetyltransferase
CJO90_RS10120	COG1214	PFAM Peptidase M22, glycoprotease
CJO90_RS10130	COG2814	Major facilitator Superfamily
CJO90_RS10140	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
CJO90_RS10155	COG0583	DNA-binding transcription factor activity
CJO90_RS10165	COG2224	Isocitrate lyase
CJO90_RS10185	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
CJO90_RS10200	COG3275	phosphorelay sensor kinase activity
CJO90_RS10225	COG0583	DNA-binding transcription factor activity
CJO90_RS10230	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
CJO90_RS10235	COG4208	sulfate ABC transporter
CJO90_RS10260	COG1116	anion transmembrane transporter activity
CJO90_RS10265	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CJO90_RS10270	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CJO90_RS10275	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CJO90_RS10280	COG0431	NADPH-dependent FMN reductase
CJO90_RS10285	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
CJO90_RS10290	COG2985	domain, Protein
CJO90_RS10295	COG0281	malic enzyme
CJO90_RS10310	COG4191	Histidine kinase
CJO90_RS10320	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
CJO90_RS10330	COG0542	response to heat
CJO90_RS10340	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
CJO90_RS10345	COG0314	molybdopterin synthase activity
CJO90_RS10350	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
CJO90_RS10355	COG0303	'Molybdopterin
CJO90_RS10360	COG1573	uracil-dna glycosylase
CJO90_RS10375	COG0436	Aminotransferase
CJO90_RS10385	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
CJO90_RS10390	COG2076	Multidrug Resistance protein
CJO90_RS10395	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CJO90_RS10410	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
CJO90_RS10410	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CJO90_RS10420	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
CJO90_RS10425	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
CJO90_RS10435	COG0791	NLP P60 protein
CJO90_RS10440	COG0306	phosphate transporter
CJO90_RS10450	COG0305	Participates in initiation and elongation during chromosome replication
CJO90_RS10455	COG0359	binds to the 23S rRNA
CJO90_RS10460	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
CJO90_RS10470	COG0360	Binds together with S18 to 16S ribosomal RNA
CJO90_RS10485	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
CJO90_RS10500	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CJO90_RS10525	COG1024	Enoyl-CoA hydratase
CJO90_RS10535	COG1217	gtp-binding protein TYPA
CJO90_RS10550	COG1566	PFAM secretion protein HlyD family protein
CJO90_RS10555	COG2814	Major facilitator Superfamily
CJO90_RS10560	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
CJO90_RS10565	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
CJO90_RS10570	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
CJO90_RS10575	COG0195	Participates in both transcription termination and antitermination
CJO90_RS10575	COG2251	uridine kinase activity
CJO90_RS10580	COG0779	Required for maturation of 30S ribosomal subunits
CJO90_RS10585	COG1187	pseudouridine synthase activity
CJO90_RS10590	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
CJO90_RS10600	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CJO90_RS10635	COG3278	Belongs to the heme-copper respiratory oxidase family
CJO90_RS10645	COG2217	Heavy metal translocating P-type atpase
CJO90_RS10655	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
CJO90_RS10660	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CJO90_RS10665	COG0508	dehydrogenase complex catalyzes the overall conversion of
CJO90_RS10670	COG0567	Dehydrogenase, E1 component
CJO90_RS10675	COG0584	glycerophosphoryl diester phosphodiesterase
CJO90_RS10680	COG3842	ATPase activity
CJO90_RS10690	COG1175	transmembrane transport
CJO90_RS10695	COG1653	transport
CJO90_RS10710	COG2204	response regulator
CJO90_RS10725	COG0174	glutamine synthetase
CJO90_RS10735	COG1546	Belongs to the CinA family
CJO90_RS10735	COG1058	Belongs to the CinA family
CJO90_RS10760	COG1643	Atp-dependent helicase
CJO90_RS10765	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
CJO90_RS10765	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
CJO90_RS10770	COG1737	Transcriptional regulator
CJO90_RS10775	COG0673	inositol 2-dehydrogenase activity
CJO90_RS10785	COG0673	inositol 2-dehydrogenase activity
CJO90_RS10795	COG1082	Xylose isomerase domain protein TIM barrel
CJO90_RS10800	COG1172	Belongs to the binding-protein-dependent transport system permease family
CJO90_RS10805	COG1129	ABC transporter
CJO90_RS10815	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CJO90_RS10820	COG3962	Belongs to the TPP enzyme family
CJO90_RS10830	COG3718	enzyme involved in inositol metabolism
CJO90_RS10840	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
CJO90_RS10850	COG1953	Uracil, thiamine, allantoin
CJO90_RS10855	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
CJO90_RS10860	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
CJO90_RS10865	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
CJO90_RS10870	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CJO90_RS10875	COG0557	exoribonuclease II activity
CJO90_RS10885	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
CJO90_RS10890	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
CJO90_RS10895	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
CJO90_RS10905	COG0330	HflC and HflK could
CJO90_RS10910	COG0330	HflC and HflK could
CJO90_RS10915	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
CJO90_RS10920	COG1923	regulation of RNA biosynthetic process
CJO90_RS10925	COG1160	GTP binding
CJO90_RS10935	COG2976	Protein conserved in bacteria
CJO90_RS10940	COG0124	histidyl-tRNA synthetase
CJO90_RS10945	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
CJO90_RS10960	COG0820	rRNA (adenine-C2-)-methyltransferase activity
CJO90_RS10965	COG0105	UTP biosynthetic process
CJO90_RS10975	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
CJO90_RS10995	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
CJO90_RS11000	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
CJO90_RS11005	COG0604	alcohol dehydrogenase
CJO90_RS11005	COG3321	synthase
CJO90_RS11005	COG1028	Short-chain dehydrogenase reductase Sdr
CJO90_RS11010	COG1902	pentaerythritol trinitrate reductase activity
CJO90_RS11015	COG1309	transcriptional regulator
CJO90_RS11020	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CJO90_RS11030	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CJO90_RS11035	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CJO90_RS11050	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
CJO90_RS11055	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
CJO90_RS11060	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CJO90_RS11070	COG1074	ATP-dependent DNA helicase activity
CJO90_RS11085	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
CJO90_RS11095	COG2197	response regulator
CJO90_RS11100	COG3228	Belongs to the MtfA family
CJO90_RS11110	COG0254	rRNA binding
CJO90_RS11120	COG0534	Mate efflux family protein
CJO90_RS11155	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CJO90_RS11160	COG1752	Esterase of the alpha-beta hydrolase superfamily
CJO90_RS11165	COG0791	NLP P60 protein
CJO90_RS11170	COG4172	Belongs to the ABC transporter superfamily
CJO90_RS11175	COG4239	(ABC) transporter, permease
CJO90_RS11180	COG4174	ABC transporter (Permease)
CJO90_RS11185	COG4166	transmembrane transport
CJO90_RS11200	COG0527	aspartate kinase activity
CJO90_RS11205	COG0037	tRNA processing
CJO90_RS11210	COG0825	malonyl-CoA metabolic process
CJO90_RS11215	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
CJO90_RS11220	COG0215	cysteine-tRNA ligase activity
CJO90_RS11235	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CJO90_RS11240	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CJO90_RS11245	COG1045	serine acetyltransferase
CJO90_RS11255	COG0483	inositol monophosphate 1-phosphatase activity
CJO90_RS11260	COG1396	sequence-specific DNA binding
CJO90_RS11270	COG2258	MOSC domain
CJO90_RS11280	COG0840	transmembrane signaling receptor activity
CJO90_RS11290	COG2814	Major facilitator Superfamily
CJO90_RS11295	COG0583	DNA-binding transcription factor activity
CJO90_RS11300	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
CJO90_RS11315	COG2850	peptidyl-arginine hydroxylation
CJO90_RS11320	COG0321	lipoyl(octanoyl) transferase activity
CJO90_RS11320	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
CJO90_RS11325	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
CJO90_RS11330	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CJO90_RS11340	COG0180	Tryptophanyl-tRNA synthetase
CJO90_RS11345	COG1994	Peptidase M50
CJO90_RS11350	COG0009	L-threonylcarbamoyladenylate synthase
CJO90_RS11355	COG0613	PHP domain protein
CJO90_RS11360	COG0492	ferredoxin-NADP+ reductase activity
CJO90_RS11375	COG3011	Protein conserved in bacteria
CJO90_RS11380	COG2267	carboxylic ester hydrolase activity
CJO90_RS11385	COG2833	Protein of unknown function (DUF455)
CJO90_RS11395	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
CJO90_RS11405	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
CJO90_RS11410	COG0148	phosphopyruvate hydratase activity
CJO90_RS11420	COG2877	3-deoxy-8-phosphooctulonate synthase activity
CJO90_RS11425	COG0504	CTP synthase activity
CJO90_RS11450	COG2308	Evidence 4 Homologs of previously reported genes of
CJO90_RS11460	COG0084	hydrolase, TatD family'
CJO90_RS11465	COG1136	(ABC) transporter
CJO90_RS11480	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
CJO90_RS11485	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
CJO90_RS11510	COG2855	membrane
CJO90_RS11515	COG0583	DNA-binding transcription factor activity
CJO90_RS11555	COG0404	The glycine cleavage system catalyzes the degradation of glycine
CJO90_RS11555	COG0446	pyridine nucleotide-disulphide oxidoreductase
CJO90_RS11585	COG0436	Aminotransferase
CJO90_RS11595	COG0583	DNA-binding transcription factor activity
CJO90_RS11600	COG2271	Major facilitator Superfamily
CJO90_RS11640	COG0625	glutathione transferase activity
CJO90_RS11645	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CJO90_RS11655	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CJO90_RS11665	COG2271	Major facilitator Superfamily
CJO90_RS11675	COG2186	Transcriptional regulator
CJO90_RS11680	COG3385	transposase activity
CJO90_RS11690	COG0745	RESPONSE REGULATOR receiver
CJO90_RS11700	COG5002	protein histidine kinase activity
CJO90_RS11710	COG0745	RESPONSE REGULATOR receiver
CJO90_RS11735	COG0322	excinuclease ABC activity
CJO90_RS11745	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
CJO90_RS11755	COG0736	holo-[acyl-carrier-protein] synthase activity
CJO90_RS11760	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
CJO90_RS11770	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
CJO90_RS11775	COG0571	ribonuclease III activity
CJO90_RS11785	COG0681	Belongs to the peptidase S26 family
CJO90_RS11790	COG0481	GTPase activity
CJO90_RS11800	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CJO90_RS11825	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CJO90_RS11830	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CJO90_RS11835	COG1028	Short-chain dehydrogenase reductase Sdr
CJO90_RS11845	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CJO90_RS11850	COG0416	fatty acid biosynthetic process
CJO90_RS11855	COG0333	Belongs to the bacterial ribosomal protein bL32 family
CJO90_RS11860	COG1399	metal-binding, possibly nucleic acid-binding protein
CJO90_RS11865	COG0424	maF-like protein
CJO90_RS11875	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
CJO90_RS11875	COG0616	signal peptide processing
CJO90_RS11885	COG0546	phosphoglycolate phosphatase activity
CJO90_RS11895	COG1530	ribonuclease E activity
CJO90_RS11900	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
CJO90_RS11905	COG0746	molybdenum cofactor guanylyltransferase activity
CJO90_RS11920	COG1322	Protein conserved in bacteria
CJO90_RS11940	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
CJO90_RS11950	COG1028	Short-chain dehydrogenase reductase Sdr
CJO90_RS11955	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
CJO90_RS11965	COG3385	transposase activity
CJO90_RS11980	COG0443	Heat shock 70 kDa protein
CJO90_RS11985	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
CJO90_RS11995	COG0316	Belongs to the HesB IscA family
CJO90_RS12000	COG0822	iron-sulfur transferase activity
CJO90_RS12005	COG1104	cysteine desulfurase activity
CJO90_RS12015	COG1879	ABC-type sugar transport system periplasmic component
CJO90_RS12025	COG1172	Belongs to the binding-protein-dependent transport system permease family
CJO90_RS12030	COG1609	Transcriptional regulator
CJO90_RS12035	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CJO90_RS12045	COG0556	nucleotide-excision repair
CJO90_RS12060	COG1309	transcriptional regulator
CJO90_RS12065	COG2878	Part of a membrane complex involved in electron transport
CJO90_RS12070	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CJO90_RS12075	COG0778	Nitroreductase
CJO90_RS12080	COG3039	Transposase
CJO90_RS12100	COG3385	transposase activity
CJO90_RS12115	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CJO90_RS12155	COG0326	Molecular chaperone. Has ATPase activity
CJO90_RS12160	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CJO90_RS12165	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
CJO90_RS12170	COG0697	spore germination
CJO90_RS12180	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CJO90_RS12185	COG0625	glutathione transferase activity
CJO90_RS12200	COG1620	l-lactate permease
CJO90_RS12220	COG0741	lytic transglycosylase activity
CJO90_RS12230	COG0488	(ABC) transporter
CJO90_RS12270	COG0513	Belongs to the DEAD box helicase family
CJO90_RS12275	COG1262	PFAM Formylglycine-generating sulfatase enzyme
CJO90_RS12285	COG0861	Integral membrane protein TerC family
CJO90_RS12295	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
CJO90_RS12300	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
CJO90_RS12305	COG0312	modulator of DNA gyrase
CJO90_RS12310	COG3028	Belongs to the UPF0307 family
CJO90_RS12315	COG0521	Mo-molybdopterin cofactor biosynthetic process
CJO90_RS12320	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
CJO90_RS12325	COG0501	Belongs to the peptidase M48B family
CJO90_RS12340	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
CJO90_RS12345	COG0494	nUDIX hydrolase
CJO90_RS12355	COG0336	Belongs to the RNA methyltransferase TrmD family
CJO90_RS12360	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
CJO90_RS12365	COG0228	four-way junction DNA binding
CJO90_RS12400	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CJO90_RS12405	COG1960	acyl-CoA dehydrogenase activity
CJO90_RS12425	COG2011	ABC-type metal ion transport system permease component
CJO90_RS12430	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CJO90_RS12435	COG0123	including yeast histone deacetylase and acetoin utilization protein
CJO90_RS12440	COG2951	lytic endotransglycosylase activity
CJO90_RS12445	COG3385	transposase activity
CJO90_RS12460	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CJO90_RS12465	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
CJO90_RS12475	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
CJO90_RS12485	COG0776	regulation of translation
CJO90_RS12495	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
CJO90_RS12500	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
CJO90_RS12510	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CJO90_RS12515	COG0077	Prephenate dehydratase
CJO90_RS12515	COG1605	Chorismate mutase
CJO90_RS12520	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
CJO90_RS12545	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
CJO90_RS12605	COG3039	Transposase
CJO90_RS12685	COG3039	Transposase
CJO90_RS12855	COG1309	transcriptional regulator
CJO90_RS12865	COG0604	alcohol dehydrogenase
CJO90_RS12900	COG0778	Nitroreductase
CJO90_RS12915	COG4305	rare lipoprotein A
CJO90_RS12940	COG1280	lysine exporter protein (LysE YggA)
CJO90_RS12955	COG0425	Belongs to the sulfur carrier protein TusA family
CJO90_RS12970	COG1942	4-Oxalocrotonate Tautomerase
CJO90_RS12975	COG0235	Class ii aldolase
CJO90_RS12980	COG0477	Major facilitator Superfamily
CJO90_RS12995	COG0330	HflC and HflK could
CJO90_RS13020	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
CJO90_RS13025	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CJO90_RS13050	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CJO90_RS13080	COG4681	YaeQ
CJO90_RS13095	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
CJO90_RS13105	COG0318	PFAM AMP-dependent synthetase and ligase
CJO90_RS13110	COG3118	belongs to the thioredoxin family
CJO90_RS13120	COG2703	oxygen carrier activity
CJO90_RS13125	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
CJO90_RS13130	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
CJO90_RS13135	COG2982	Protein involved in outer membrane biogenesis
CJO90_RS13160	COG0259	pyridoxamine-phosphate oxidase activity
CJO90_RS13165	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CJO90_RS13175	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CJO90_RS13180	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CJO90_RS13190	COG1522	sequence-specific DNA binding
CJO90_RS13195	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
CJO90_RS13205	COG3483	tryptophan 2,3-dioxygenase activity
CJO90_RS13215	COG1960	acyl-CoA dehydrogenase activity
CJO90_RS13220	COG2252	PERMEase
CJO90_RS13225	COG0450	alkyl hydroperoxide reductase
CJO90_RS13230	COG4575	ribosome binding
CJO90_RS13250	COG1136	(ABC) transporter
CJO90_RS13255	COG0390	transport system, permease component
CJO90_RS13280	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
CJO90_RS13285	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
CJO90_RS13290	COG0745	RESPONSE REGULATOR receiver
CJO90_RS13300	COG3385	transposase activity
CJO90_RS13310	COG2391	methyltransferase activity
CJO90_RS13315	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
CJO90_RS13330	COG0823	Involved in the tonB-independent uptake of proteins
CJO90_RS13350	COG0824	Thioesterase
CJO90_RS13355	COG4221	oxidoreductase activity
CJO90_RS13360	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
CJO90_RS13365	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
CJO90_RS13430	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CJO90_RS13430	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CJO90_RS13445	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
CJO90_RS13450	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CJO90_RS13455	COG0436	Aminotransferase
CJO90_RS13465	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
CJO90_RS13495	COG0220	tRNA (guanine-N7-)-methyltransferase activity
CJO90_RS13500	COG1902	pentaerythritol trinitrate reductase activity
CJO90_RS13505	COG1968	undecaprenyl-diphosphatase activity
CJO90_RS13530	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
CJO90_RS13535	COG0425	Belongs to the sulfur carrier protein TusA family
CJO90_RS13535	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CJO90_RS13555	COG0859	PFAM glycosyl transferase family 9
CJO90_RS13570	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CJO90_RS13605	COG1088	dTDP-glucose 4,6-dehydratase activity
CJO90_RS13610	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
CJO90_RS13625	COG0540	Belongs to the ATCase OTCase family
CJO90_RS13630	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
CJO90_RS13635	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
CJO90_RS13640	COG1678	Uncharacterized ACR, COG1678
CJO90_RS13645	COG1187	pseudouridine synthase activity
CJO90_RS13660	COG0840	transmembrane signaling receptor activity
CJO90_RS13680	COG1773	rubredoxin
CJO90_RS13685	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
CJO90_RS13690	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CJO90_RS13700	COG1704	LemA family
CJO90_RS13745	COG4964	Belongs to the GSP D family
CJO90_RS13810	COG4269	membrane
CJO90_RS13815	COG0459	protein refolding
CJO90_RS13820	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
CJO90_RS13840	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
CJO90_RS13845	COG4117	Thiosulfate reductase cytochrome B subunit (Membrane anchoring protein)
CJO90_RS13855	COG2974	May be involved in recombination
CJO90_RS13885	COG0697	spore germination
CJO90_RS13925	COG0840	transmembrane signaling receptor activity
CJO90_RS13930	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
CJO90_RS13950	COG2995	paraquat-inducible protein a
CJO90_RS13955	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
CJO90_RS13955	COG3008	intermembrane lipid transfer
CJO90_RS13965	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CJO90_RS14030	COG0738	Major facilitator superfamily
CJO90_RS14035	COG2027	D-alanyl-D-alanine carboxypeptidase
CJO90_RS14040	COG1763	Mo-molybdopterin cofactor biosynthetic process
CJO90_RS14060	COG0546	phosphoglycolate phosphatase activity
CJO90_RS14070	COG0009	L-threonylcarbamoyladenylate synthase
CJO90_RS14075	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
CJO90_RS14080	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
CJO90_RS14085	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
CJO90_RS14095	COG0469	pyruvate kinase activity
CJO90_RS14100	COG0126	phosphoglycerate kinase activity
CJO90_RS14130	COG0859	PFAM glycosyl transferase family 9
CJO90_RS14140	COG0429	hydrolase of the alpha beta-hydrolase fold
CJO90_RS14150	COG4783	chaperone-mediated protein folding
CJO90_RS14155	COG0315	cyclic pyranopterin monophosphate synthase activity
CJO90_RS14165	COG4969	Belongs to the N-Me-Phe pilin family
CJO90_RS14175	COG0861	Integral membrane protein TerC family
CJO90_RS14185	COG0045	succinate-CoA ligase (ADP-forming) activity
CJO90_RS14195	COG2137	regulation of response to DNA damage stimulus
CJO90_RS14200	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
CJO90_RS14210	COG0642	Histidine kinase
CJO90_RS14220	COG0477	Major facilitator Superfamily
CJO90_RS14330	COG0513	Belongs to the DEAD box helicase family
CJO90_RS14360	COG0318	PFAM AMP-dependent synthetase and ligase
CJO90_RS14385	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CJO90_RS14390	COG1702	phosphate starvation-inducible protein PhoH
CJO90_RS14395	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
CJO90_RS14400	COG4535	Mg2 and Co2 transporter CorC
CJO90_RS14410	COG0752	glycyl-tRNA synthetase alpha subunit
CJO90_RS14420	COG0751	glycine-tRNA ligase activity
CJO90_RS14425	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
CJO90_RS14430	COG0204	Acyl-transferase
CJO90_RS14445	COG0346	lactoylglutathione lyase activity
CJO90_RS14450	COG0697	spore germination
CJO90_RS14455	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
CJO90_RS14460	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
CJO90_RS14465	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CJO90_RS14470	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
CJO90_RS14490	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
CJO90_RS14500	COG0006	proline dipeptidase activity
CJO90_RS14505	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CJO90_RS14515	COG4680	protein conserved in bacteria
CJO90_RS14530	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
CJO90_RS14535	COG0138	bifunctional purine biosynthesis protein purh
CJO90_RS14540	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
CJO90_RS14550	COG0632	four-way junction helicase activity
CJO90_RS14555	COG2255	four-way junction helicase activity
CJO90_RS14570	COG1490	D-aminoacyl-tRNA deacylase activity
CJO90_RS14575	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
CJO90_RS14580	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
CJO90_RS14585	COG0316	Belongs to the HesB IscA family
CJO90_RS14600	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
CJO90_RS14605	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
CJO90_RS14625	COG0418	dihydroorotase activity
CJO90_RS14635	COG0473	3-isopropylmalate dehydrogenase activity
CJO90_RS14640	COG0121	glutamine amidotransferase
CJO90_RS14645	COG1126	abc transporter atp-binding protein
CJO90_RS14650	COG0765	amino acid transport
CJO90_RS14655	COG0765	amino acid transport
CJO90_RS14665	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CJO90_RS14685	COG1024	Enoyl-CoA hydratase
CJO90_RS14690	COG0183	Belongs to the thiolase family
CJO90_RS14695	COG1250	3-hydroxyacyl-CoA dehydrogenase
CJO90_RS14695	COG1024	Enoyl-CoA hydratase
CJO90_RS14700	COG1960	acyl-CoA dehydrogenase activity
CJO90_RS14715	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CJO90_RS14720	COG3568	Endonuclease Exonuclease Phosphatase
CJO90_RS14725	COG0494	nUDIX hydrolase
CJO90_RS14735	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
CJO90_RS14760	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
CJO90_RS14775	COG2226	methyltransferase
CJO90_RS14785	COG4178	(ABC) transporter
CJO90_RS14800	COG1238	metal cluster binding
CJO90_RS14805	COG0700	Nucleoside recognition
CJO90_RS14820	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CJO90_RS14825	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
CJO90_RS14825	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
CJO90_RS14855	COG0318	PFAM AMP-dependent synthetase and ligase
CJO90_RS14860	COG3265	gluconokinase activity
CJO90_RS14875	COG2391	methyltransferase activity
CJO90_RS14890	COG1028	Short-chain dehydrogenase reductase Sdr
CJO90_RS14905	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
CJO90_RS14930	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CJO90_RS14960	COG0629	single-stranded DNA binding
CJO90_RS14965	COG2814	Major facilitator Superfamily
CJO90_RS14980	COG1280	lysine exporter protein (LysE YggA)
CJO90_RS14985	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
CJO90_RS14990	COG0693	protein deglycase activity
CJO90_RS15015	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
CJO90_RS15030	COG1137	ATPase activity
CJO90_RS15035	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
CJO90_RS15040	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
CJO90_RS15050	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
CJO90_RS15060	COG1660	Displays ATPase and GTPase activities
CJO90_RS15070	COG1194	a g-specific adenine glycosylase
CJO90_RS15080	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
CJO90_RS15090	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
CJO90_RS15095	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
CJO90_RS15105	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CJO90_RS15110	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
CJO90_RS15115	COG0193	aminoacyl-tRNA hydrolase activity
CJO90_RS15125	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CJO90_RS15130	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
CJO90_RS15135	COG0742	ribosomal rna small subunit methyltransferase
CJO90_RS15140	COG0612	Peptidase, M16
CJO90_RS15145	COG0612	Peptidase, M16
CJO90_RS15160	COG0625	glutathione transferase activity
CJO90_RS15170	COG3707	response regulator
CJO90_RS15180	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CJO90_RS15185	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CJO90_RS15190	COG1116	anion transmembrane transporter activity
CJO90_RS15200	COG1741	Belongs to the pirin family
CJO90_RS15210	COG3300	MHYT domain
CJO90_RS15210	COG5001	Diguanylate cyclase
CJO90_RS15215	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CJO90_RS15220	COG1999	signal sequence binding
CJO90_RS15225	COG0109	protoheme IX farnesyltransferase activity
CJO90_RS15230	COG1612	heme a metabolic process
CJO90_RS15260	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
CJO90_RS15280	COG2226	methyltransferase
CJO90_RS15285	COG1040	competence protein
CJO90_RS15295	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
CJO90_RS15300	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
CJO90_RS15305	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
CJO90_RS15310	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CJO90_RS15315	COG0588	phosphoglycerate mutase activity
CJO90_RS15320	COG0793	Belongs to the peptidase S41A family
CJO90_RS15340	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CJO90_RS15345	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CJO90_RS15355	COG0189	ligase activity
CJO90_RS15365	COG0004	ammonium transporteR
CJO90_RS15395	COG3039	Transposase
CJO90_RS15435	COG3039	Transposase
CJO90_RS15535	COG3039	Transposase
CJO90_RS15560	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
CJO90_RS15570	COG2204	response regulator
CJO90_RS15575	COG4191	Histidine kinase
CJO90_RS15580	COG1301	dicarboxylic acid transport
CJO90_RS15585	COG3411	Ferredoxin
CJO90_RS15595	COG1686	Belongs to the peptidase S11 family
CJO90_RS15600	COG2921	Belongs to the UPF0250 family
CJO90_RS15615	COG0321	lipoyl(octanoyl) transferase activity
CJO90_RS15620	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
CJO90_RS15665	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
CJO90_RS15670	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
CJO90_RS15670	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
CJO90_RS15685	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
CJO90_RS15710	COG1024	Enoyl-CoA hydratase
CJO90_RS15740	COG2267	carboxylic ester hydrolase activity
CJO90_RS15760	COG0646	methionine synthase
CJO90_RS15760	COG1410	methionine synthase
CJO90_RS15765	COG3039	Transposase
CJO90_RS15775	COG2197	response regulator
CJO90_RS15800	COG0018	arginyl-trna synthetase
CJO90_RS15810	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CJO90_RS15815	COG4221	oxidoreductase activity
CJO90_RS15860	COG2329	Antibiotic biosynthesis monooxygenase
CJO90_RS15870	COG0789	Transcriptional regulator
CJO90_RS15875	COG1960	acyl-CoA dehydrogenase activity
CJO90_RS15880	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
CJO90_RS15885	COG0288	reversible hydration of carbon dioxide
CJO90_RS15890	COG0183	Belongs to the thiolase family
CJO90_RS15895	COG1028	Short-chain dehydrogenase reductase Sdr
CJO90_RS15900	COG1960	acyl-CoA dehydrogenase activity
CJO90_RS15915	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CJO90_RS15920	COG3012	SEC-C Motif Domain Protein
CJO90_RS15925	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
CJO90_RS15935	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
CJO90_RS15940	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
CJO90_RS15945	COG4770	biotin carboxylase activity
CJO90_RS15960	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CJO90_RS15990	COG0596	Alpha beta hydrolase
CJO90_RS16025	COG3039	Transposase
CJO90_RS16035	COG1250	3-hydroxyacyl-CoA dehydrogenase
CJO90_RS16040	COG0583	DNA-binding transcription factor activity
CJO90_RS16120	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CJO90_RS16130	COG0430	RNA-3'-phosphate cyclase activity
CJO90_RS16135	COG3541	Predicted nucleotidyltransferase
CJO90_RS16140	COG1690	Belongs to the RtcB family
CJO90_RS16150	COG4650	regulator
CJO90_RS16165	COG1254	Belongs to the acylphosphatase family
CJO90_RS16185	COG2814	Major facilitator Superfamily
CJO90_RS16195	COG0583	DNA-binding transcription factor activity
CJO90_RS16200	COG0518	GMP synthase (glutamine-hydrolyzing) activity
CJO90_RS16200	COG0519	Catalyzes the synthesis of GMP from XMP
CJO90_RS16215	COG1733	regulation of RNA biosynthetic process
CJO90_RS16255	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
CJO90_RS16265	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CJO90_RS16270	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
CJO90_RS16275	COG0071	Belongs to the small heat shock protein (HSP20) family
CJO90_RS16290	COG3038	cytochrome b561
CJO90_RS16310	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CJO90_RS16315	COG1063	alcohol dehydrogenase
CJO90_RS16325	COG2197	response regulator
CJO90_RS16330	COG3851	Histidine kinase
CJO90_RS16335	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CJO90_RS16370	COG3039	Transposase
CJO90_RS16375	COG0589	response to stress
CJO90_RS16380	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
CJO90_RS16400	COG0589	response to stress
CJO90_RS16410	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
CJO90_RS16415	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
CJO90_RS16425	COG0037	tRNA processing
CJO90_RS16430	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
CJO90_RS16435	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
CJO90_RS16435	COG0546	phosphoglycolate phosphatase activity
CJO90_RS16460	COG0493	'glutamate synthase
CJO90_RS16475	COG0842	Transport permease protein
CJO90_RS16480	COG1131	(ABC) transporter
CJO90_RS16495	COG1012	belongs to the aldehyde dehydrogenase family
CJO90_RS16500	COG0583	DNA-binding transcription factor activity
CJO90_RS16505	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CJO90_RS16530	COG2223	nitrite transmembrane transporter activity
CJO90_RS16545	COG0697	spore germination
CJO90_RS16570	COG1434	Gram-negative-bacterium-type cell wall biogenesis
CJO90_RS16590	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
CJO90_RS16595	COG4682	membrane
CJO90_RS16600	COG0708	Exodeoxyribonuclease III
CJO90_RS16605	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
CJO90_RS16610	COG2326	polyphosphate kinase activity
CJO90_RS16615	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
CJO90_RS16620	COG1560	Kdo2-lipid A biosynthetic process
CJO90_RS16630	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
CJO90_RS16650	COG0517	IMP dehydrogenase activity
CJO90_RS16660	COG1522	sequence-specific DNA binding
CJO90_RS16705	COG1960	acyl-CoA dehydrogenase activity
CJO90_RS16740	COG2070	2-Nitropropane dioxygenase
CJO90_RS16745	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
CJO90_RS16760	COG2022	thiamine diphosphate biosynthetic process
CJO90_RS16770	COG2764	glyoxalase bleomycin resistance protein dioxygenase
CJO90_RS16810	COG0351	phosphomethylpyrimidine kinase
CJO90_RS16820	COG1785	Belongs to the alkaline phosphatase family
CJO90_RS16825	COG1785	Belongs to the alkaline phosphatase family
CJO90_RS16840	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
CJO90_RS16845	COG1950	PFAM Membrane protein of
CJO90_RS16860	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
CJO90_RS16880	COG0617	tRNA 3'-terminal CCA addition
CJO90_RS16890	COG3246	L-lysine catabolic process to acetate
CJO90_RS16895	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
CJO90_RS16920	COG2204	response regulator
CJO90_RS16925	COG5000	phosphorelay sensor kinase activity
CJO90_RS16940	COG0501	Belongs to the peptidase M48B family
CJO90_RS16950	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
CJO90_RS16960	COG0242	peptide deformylase activity
CJO90_RS16965	COG1652	LysM domain
CJO90_RS16970	COG0758	DNA mediated transformation
CJO90_RS16985	COG0583	DNA-binding transcription factor activity
CJO90_RS16990	COG0318	PFAM AMP-dependent synthetase and ligase
CJO90_RS16995	COG0772	Belongs to the SEDS family
CJO90_RS17000	COG0768	penicillin binding
CJO90_RS17010	COG1792	Involved in formation and maintenance of cell shape
CJO90_RS17015	COG1077	Cell shape determining protein MreB Mrl
CJO90_RS17020	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CJO90_RS17025	COG0154	amidase activity
CJO90_RS17040	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CJO90_RS17050	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
CJO90_RS17055	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
CJO90_RS17075	COG0523	cobalamin synthesis protein
CJO90_RS17090	COG0747	negative chemotaxis
CJO90_RS17095	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
CJO90_RS17100	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
CJO90_RS17110	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
CJO90_RS17140	COG1595	DNA-templated transcription, initiation
CJO90_RS17145	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
CJO90_RS17160	COG3385	transposase activity
CJO90_RS17170	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
CJO90_RS17180	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
CJO90_RS17200	COG2879	small protein
CJO90_RS17205	COG1966	Carbon starvation protein
CJO90_RS17220	COG3622	Belongs to the hyi family
CJO90_RS17230	COG0745	RESPONSE REGULATOR receiver
CJO90_RS17235	COG1274	phosphoenolpyruvate carboxykinase (GTP) activity
CJO90_RS17245	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CJO90_RS17250	COG3384	dioxygenase
CJO90_RS17265	COG1309	transcriptional regulator
CJO90_RS17270	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CJO90_RS17275	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CJO90_RS17285	COG0828	Belongs to the bacterial ribosomal protein bS21 family
CJO90_RS17300	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
CJO90_RS17305	COG0706	membrane insertase activity
CJO90_RS17310	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
CJO90_RS17315	COG0594	ribonuclease P activity
CJO90_RS17320	COG0230	Belongs to the bacterial ribosomal protein bL34 family
CJO90_RS17330	COG3385	transposase activity
CJO90_RS17335	COG1278	Cold shock
CJO90_RS17360	COG0477	Major facilitator Superfamily
CJO90_RS17365	COG4191	Histidine kinase
CJO90_RS17375	COG4377	Putative membrane peptidase family (DUF2324)
CJO90_RS17385	COG3447	MASE1 domain protein
CJO90_RS17385	COG5002	protein histidine kinase activity
CJO90_RS17385	COG5001	Diguanylate cyclase
CJO90_RS17425	COG0038	chloride channel
CJO90_RS17440	COG1881	PFAM PEBP family protein
CJO90_RS17470	COG2916	Histone family protein nucleoid-structuring protein H-NS
CJO90_RS17475	COG3039	Transposase
CJO90_RS17500	COG1028	Short-chain dehydrogenase reductase Sdr
CJO90_RS17510	COG1024	Enoyl-CoA hydratase
CJO90_RS17515	COG1960	acyl-CoA dehydrogenase activity
CJO90_RS17555	COG3039	Transposase
CJO90_RS17575	COG3039	Transposase
CJO90_RS17590	COG0477	Major facilitator Superfamily
CJO90_RS17595	COG3636	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
CJO90_RS17600	COG3657	addiction module killer protein
CJO90_RS17605	COG2814	Major facilitator Superfamily
CJO90_RS17645	COG0725	ABC transporter, periplasmic molybdate-binding protein
CJO90_RS17660	COG0714	Associated with various cellular activities
CJO90_RS17675	COG0288	reversible hydration of carbon dioxide
CJO90_RS17680	COG0659	secondary active sulfate transmembrane transporter activity
CJO90_RS17725	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
CJO90_RS17735	COG4737	Cytotoxic translational repressor of toxin-antitoxin stability system
CJO90_RS17740	COG2944	sequence-specific DNA binding
CJO90_RS17755	COG3039	Transposase
CJO90_RS17765	COG0210	DNA helicase
CJO90_RS17785	COG3039	Transposase
CJO90_RS17795	COG0697	spore germination
CJO90_RS17810	COG1902	pentaerythritol trinitrate reductase activity
CJO90_RS17810	COG0446	pyridine nucleotide-disulphide oxidoreductase
CJO90_RS17820	COG4677	pectinesterase activity
CJO90_RS17835	COG4968	Prepilin-type N-terminal cleavage methylation domain
CJO90_RS17850	COG4796	Type ii and iii secretion system protein
CJO90_RS17875	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CJO90_RS17905	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
CJO90_RS17915	COG0534	Mate efflux family protein
CJO90_RS17920	COG3251	PFAM MbtH domain protein
CJO90_RS17930	COG0529	Catalyzes the synthesis of activated sulfate
CJO90_RS17965	COG1104	cysteine desulfurase activity
CJO90_RS18030	COG2706	6-phosphogluconolactonase activity
CJO90_RS18095	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
CJO90_RS18105	COG0028	Belongs to the TPP enzyme family
CJO90_RS18120	COG1607	acyl-coa hydrolase
CJO90_RS18160	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
CJO90_RS18175	COG3039	Transposase
CJO90_RS18190	COG3039	Transposase
CJO90_RS18240	COG1846	Transcriptional regulator
CJO90_RS18245	COG1024	Enoyl-CoA hydratase
CJO90_RS18250	COG1012	belongs to the aldehyde dehydrogenase family
CJO90_RS18290	COG2814	Major facilitator Superfamily
CJO90_RS18320	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
CJO90_RS18325	COG0366	Alpha amylase catalytic
CJO90_RS18335	COG0297	glycogen (starch) synthase activity
CJO90_RS18340	COG3720	iron ion transport
CJO90_RS18345	COG4771	TonB-dependent receptor
CJO90_RS18355	COG3634	alkyl hydroperoxide reductase activity
CJO90_RS18360	COG0735	belongs to the Fur family
CJO90_RS18380	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
CJO90_RS18380	COG1918	ferrous iron import across plasma membrane
CJO90_RS18390	COG5001	Diguanylate cyclase
CJO90_RS18390	COG3447	MASE1 domain protein
CJO90_RS18390	COG5002	protein histidine kinase activity
CJO90_RS18400	COG0840	transmembrane signaling receptor activity
CJO90_RS18420	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
CJO90_RS18435	COG3131	Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs)
CJO90_RS18445	COG0454	-acetyltransferase
CJO90_RS18445	COG0456	acetyltransferase
CJO90_RS18490	COG3039	Transposase
CJO90_RS18525	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
CJO90_RS18540	COG3706	GGDEF domain
CJO90_RS18545	COG0531	amino acid
CJO90_RS18565	COG2197	response regulator
CJO90_RS18575	COG1649	PFAM Uncharacterised BCR, COG1649
CJO90_RS18575	COG0726	polysaccharide deacetylase
CJO90_RS18580	COG1215	transferase activity, transferring glycosyl groups
CJO90_RS18595	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CJO90_RS18635	COG3039	Transposase
CJO90_RS18640	COG0840	transmembrane signaling receptor activity
CJO90_RS18650	COG1028	Short-chain dehydrogenase reductase Sdr
CJO90_RS18665	COG0583	DNA-binding transcription factor activity
CJO90_RS18670	COG1695	Transcriptional regulator
CJO90_RS18685	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CJO90_RS18690	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CJO90_RS18695	COG0745	RESPONSE REGULATOR receiver
CJO90_RS18700	COG3850	Histidine kinase
CJO90_RS18700	COG5002	protein histidine kinase activity
CJO90_RS18715	COG0589	response to stress
CJO90_RS18740	COG0789	Transcriptional regulator
CJO90_RS18750	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CJO90_RS18775	COG1764	response to oxidative stress
CJO90_RS18790	COG0473	3-isopropylmalate dehydrogenase activity
CJO90_RS18825	COG2916	Histone family protein nucleoid-structuring protein H-NS
CJO90_RS18845	COG3039	Transposase
CJO90_RS18870	COG1815	bacterial-type flagellum-dependent cell motility
CJO90_RS18880	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
CJO90_RS18885	COG1749	Flagellar hook protein flgE
CJO90_RS18890	COG4787	bacterial-type flagellum-dependent cell motility
CJO90_RS18900	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
CJO90_RS18905	COG1706	bacterial-type flagellum-dependent cell motility
CJO90_RS18915	COG1256	bacterial-type flagellum assembly
CJO90_RS18935	COG2226	methyltransferase
CJO90_RS18950	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CJO90_RS18955	COG1028	Short-chain dehydrogenase reductase Sdr
CJO90_RS18965	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CJO90_RS18985	COG2986	histidine ammonia-lyase
CJO90_RS18995	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CJO90_RS19005	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CJO90_RS19015	COG0204	Acyl-transferase
CJO90_RS19030	COG1987	bacterial-type flagellum assembly
CJO90_RS19035	COG1338	Plays a role in the flagellum-specific transport system
CJO90_RS19065	COG2197	response regulator
CJO90_RS19095	COG1846	Transcriptional regulator
CJO90_RS19110	COG1677	Flagellar hook-basal body complex protein FliE
CJO90_RS19120	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CJO90_RS19155	COG5001	Diguanylate cyclase
CJO90_RS19155	COG3706	GGDEF domain
CJO90_RS19155	COG2203	Gaf domain
CJO90_RS19155	COG4251	negative regulation of phosphorylation
CJO90_RS19165	COG5001	Diguanylate cyclase
CJO90_RS19165	COG4251	negative regulation of phosphorylation
CJO90_RS19165	COG3706	GGDEF domain
CJO90_RS19165	COG2203	Gaf domain
CJO90_RS19185	COG3385	transposase activity
CJO90_RS19205	COG0318	PFAM AMP-dependent synthetase and ligase
CJO90_RS19255	COG2223	nitrite transmembrane transporter activity
CJO90_RS19280	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CJO90_RS19285	COG2423	ornithine cyclodeaminase activity
CJO90_RS19290	COG4264	IucA IucC family
CJO90_RS19295	COG2814	Major facilitator Superfamily
CJO90_RS19300	COG4264	IucA IucC family
CJO90_RS19305	COG4264	IucA IucC family
CJO90_RS19315	COG0019	diaminopimelate decarboxylase activity
CJO90_RS19360	COG1902	pentaerythritol trinitrate reductase activity
CJO90_RS19370	COG0583	DNA-binding transcription factor activity
CJO90_RS19375	COG1126	abc transporter atp-binding protein
CJO90_RS19380	COG0765	amino acid transport
CJO90_RS19385	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CJO90_RS19390	COG1522	sequence-specific DNA binding
CJO90_RS19395	COG2423	ornithine cyclodeaminase activity
CJO90_RS19420	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CJO90_RS19455	COG0537	adenosine 5'-monophosphoramidase activity
CJO90_RS19460	COG0786	glutamate:sodium symporter activity
CJO90_RS19500	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CJO90_RS19510	COG0840	transmembrane signaling receptor activity
CJO90_RS19525	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
CJO90_RS19545	COG0668	transmembrane transport
CJO90_RS19580	COG3706	GGDEF domain
CJO90_RS19585	COG1914	H( )-stimulated, divalent metal cation uptake system
CJO90_RS19615	COG2910	NAD(P)H-binding
CJO90_RS19660	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
CJO90_RS19700	COG3039	Transposase
CJO90_RS19730	COG3039	Transposase
CJO90_RS19745	COG0402	S-adenosylhomocysteine deaminase activity
CJO90_RS19800	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CJO90_RS19825	COG3039	Transposase
CJO90_RS19830	COG5297	Belongs to the glycosyl hydrolase family 6
CJO90_RS19850	COG0300	oxidoreductase activity
CJO90_RS19895	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CJO90_RS19910	COG0784	Response regulator, receiver
CJO90_RS19910	COG0835	chemotaxis
CJO90_RS19935	COG1404	Belongs to the peptidase S8 family
CJO90_RS19940	COG3396	Phenylacetate-CoA oxygenase
CJO90_RS19945	COG3460	Phenylacetate-CoA oxygenase
CJO90_RS19950	COG3396	Phenylacetate-CoA oxygenase
CJO90_RS19955	COG2151	metal-sulfur cluster biosynthetic enzyme
CJO90_RS19960	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CJO90_RS19990	COG0778	Nitroreductase
CJO90_RS19995	COG1797	cobyrinic acid a,c-diamide synthase activity
CJO90_RS20030	COG1903	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A
CJO90_RS20035	COG2138	Cobalamin (vitamin B12) biosynthesis CbiX protein
CJO90_RS20040	COG1648	precorrin-2 dehydrogenase activity
CJO90_RS20040	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
CJO90_RS20050	COG3039	Transposase
CJO90_RS20070	COG3411	Ferredoxin
CJO90_RS20075	COG3376	Belongs to the NiCoT transporter (TC 2.A.52) family
CJO90_RS20110	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
CJO90_RS20115	COG4941	Belongs to the sigma-70 factor family
CJO90_RS20130	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
CJO90_RS20135	COG3251	PFAM MbtH domain protein
CJO90_RS20150	COG1522	sequence-specific DNA binding
CJO90_RS20155	COG2515	1-aminocyclopropane-1-carboxylate deaminase
CJO90_RS20160	COG1024	Enoyl-CoA hydratase
CJO90_RS20165	COG1024	Enoyl-CoA hydratase
CJO90_RS20180	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CJO90_RS20185	COG1960	acyl-CoA dehydrogenase activity
CJO90_RS20195	COG5002	protein histidine kinase activity
CJO90_RS20200	COG0745	RESPONSE REGULATOR receiver
CJO90_RS20225	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CJO90_RS20235	COG1846	Transcriptional regulator
CJO90_RS20250	COG1335	isochorismatase
CJO90_RS20260	COG2814	Major facilitator Superfamily
CJO90_RS20275	COG2818	Glycosylase
CJO90_RS20305	COG1024	Enoyl-CoA hydratase
CJO90_RS20330	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
CJO90_RS20335	COG0583	DNA-binding transcription factor activity
CJO90_RS20340	COG0259	pyridoxamine-phosphate oxidase activity
CJO90_RS20345	COG0019	diaminopimelate decarboxylase activity
CJO90_RS20350	COG0134	indole-3-glycerol-phosphate synthase activity
CJO90_RS20355	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CJO90_RS20395	COG1960	acyl-CoA dehydrogenase activity
CJO90_RS20415	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
CJO90_RS20430	COG3483	tryptophan 2,3-dioxygenase activity
CJO90_RS20440	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
CJO90_RS20455	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
CJO90_RS20460	COG1690	Belongs to the RtcB family
CJO90_RS20505	COG3039	Transposase
CJO90_RS20550	COG1858	cytochrome C peroxidase
CJO90_RS20555	COG1730	sister chromatid segregation
CJO90_RS20580	COG1712	Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L- tetrahydrodipicolinate, to generate the meso compound, D,L-2,6- diaminopimelate
CJO90_RS20600	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
CJO90_RS20740	COG1649	PFAM Uncharacterised BCR, COG1649
CJO90_RS20835	COG2197	response regulator
CJO90_RS20840	COG3916	Acyl-homoserine-lactone synthase
CJO90_RS20855	COG0525	valine-tRNA ligase activity
CJO90_RS20880	COG0318	PFAM AMP-dependent synthetase and ligase
CJO90_RS20885	COG2192	nodulation
CJO90_RS20900	COG1028	Short-chain dehydrogenase reductase Sdr
CJO90_RS20900	COG3321	synthase
CJO90_RS20900	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CJO90_RS20900	COG0318	PFAM AMP-dependent synthetase and ligase
CJO90_RS20900	COG0300	oxidoreductase activity
CJO90_RS20915	COG0436	Aminotransferase
CJO90_RS20930	COG2814	Major facilitator Superfamily
CJO90_RS20945	COG0587	DNA-directed DNA polymerase activity
CJO90_RS20950	COG3620	sequence-specific DNA binding
CJO90_RS20955	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
CJO90_RS20965	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
CJO90_RS20980	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
CJO90_RS20995	COG0355	proton-transporting ATP synthase activity, rotational mechanism
CJO90_RS21015	COG0579	oxidoreductase
CJO90_RS21025	COG1309	transcriptional regulator
CJO90_RS21035	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CJO90_RS21060	COG0583	DNA-binding transcription factor activity
CJO90_RS21070	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
CJO90_RS21075	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CJO90_RS21085	COG2271	Major facilitator Superfamily
CJO90_RS21095	COG2721	sulfolactate sulfo-lyase activity
CJO90_RS21100	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CJO90_RS21115	COG2271	Major facilitator Superfamily
CJO90_RS21120	COG1051	belongs to the nudix hydrolase family
CJO90_RS21120	COG1056	cytidyltransferase-related domain
CJO90_RS21145	COG0840	transmembrane signaling receptor activity
CJO90_RS21195	COG1595	DNA-templated transcription, initiation
CJO90_RS21205	COG2197	response regulator
CJO90_RS21210	COG0745	RESPONSE REGULATOR receiver
CJO90_RS21250	COG4790	Type iii secretion
CJO90_RS21265	COG4789	Type iii secretion
CJO90_RS21270	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CJO90_RS21315	COG2207	Transcriptional regulator
CJO90_RS21320	COG1450	Type ii and iii secretion system protein
CJO90_RS21350	COG5434	Belongs to the glycosyl hydrolase 28 family
CJO90_RS21370	COG1674	ftsk spoiiie
CJO90_RS21415	COG1942	4-Oxalocrotonate Tautomerase
CJO90_RS21420	COG4569	acetaldehyde dehydrogenase (acetylating) activity
CJO90_RS21430	COG2271	Major facilitator Superfamily
CJO90_RS21440	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CJO90_RS21485	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CJO90_RS21490	COG0583	DNA-binding transcription factor activity
CJO90_RS21510	COG1309	transcriptional regulator
CJO90_RS21520	COG3039	Transposase
CJO90_RS21530	COG2853	Lipoprotein
CJO90_RS21535	COG0745	RESPONSE REGULATOR receiver
CJO90_RS21555	COG3039	Transposase
CJO90_RS21640	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CJO90_RS21660	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CJO90_RS21665	COG1126	abc transporter atp-binding protein
CJO90_RS21670	COG0765	amino acid transport
CJO90_RS21675	COG0765	amino acid transport
CJO90_RS21680	COG4221	oxidoreductase activity
CJO90_RS21685	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
CJO90_RS21695	COG1984	allophanate hydrolase subunit 2
CJO90_RS21700	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
CJO90_RS21710	COG0511	ligase activity, forming carbon-carbon bonds
CJO90_RS21720	COG0436	Aminotransferase
CJO90_RS21725	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
CJO90_RS21735	COG3265	gluconokinase activity
CJO90_RS21740	COG1028	Short-chain dehydrogenase reductase Sdr
CJO90_RS21765	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CJO90_RS21805	COG2846	Di-iron-containing protein involved in the repair of iron-sulfur clusters
CJO90_RS21810	COG3604	Transcriptional regulator
CJO90_RS21815	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CJO90_RS21825	COG1396	sequence-specific DNA binding
CJO90_RS21855	COG3154	lipid carrier protein
CJO90_RS21860	COG0826	peptidase U32
CJO90_RS21865	COG0826	peptidase U32
CJO90_RS21880	COG2223	nitrite transmembrane transporter activity
CJO90_RS21885	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
CJO90_RS21890	COG1140	nitrate reductase beta subunit
CJO90_RS21895	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
CJO90_RS21900	COG2181	nitrate reductase activity
CJO90_RS21905	COG1763	Mo-molybdopterin cofactor biosynthetic process
CJO90_RS21910	COG3850	Histidine kinase
CJO90_RS21915	COG2197	response regulator
CJO90_RS21935	COG0352	thiamine-phosphate diphosphorylase activity
CJO90_RS21940	COG0477	Major facilitator Superfamily
CJO90_RS21945	COG1454	alcohol dehydrogenase
CJO90_RS21960	COG1999	signal sequence binding
CJO90_RS21980	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
CJO90_RS21985	COG1301	dicarboxylic acid transport
CJO90_RS21995	COG0583	DNA-binding transcription factor activity
CJO90_RS22035	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CJO90_RS22045	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CJO90_RS22065	COG0110	maltose O-acetyltransferase activity
CJO90_RS22080	COG2244	polysaccharide biosynthetic process
CJO90_RS22085	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
CJO90_RS22090	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
CJO90_RS22095	COG3206	protein involved in exopolysaccharide biosynthesis
CJO90_RS22095	COG0489	protein tyrosine kinase activity
CJO90_RS22100	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CJO90_RS22105	COG1596	polysaccharide export
CJO90_RS22150	COG0840	transmembrane signaling receptor activity
CJO90_RS22190	COG3220	belongs to the UPF0276 family
CJO90_RS22225	COG0745	RESPONSE REGULATOR receiver
CJO90_RS22250	COG2223	nitrite transmembrane transporter activity
CJO90_RS22255	COG0243	molybdopterin cofactor binding
CJO90_RS22265	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
CJO90_RS22270	COG3300	MHYT domain
CJO90_RS22270	COG5001	Diguanylate cyclase
CJO90_RS22275	COG3158	transport of potassium into the cell
CJO90_RS22280	COG1278	Cold shock
CJO90_RS22295	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
CJO90_RS22305	COG4689	acetoacetate decarboxylase
CJO90_RS22310	COG1028	Short-chain dehydrogenase reductase Sdr
CJO90_RS22320	COG0673	inositol 2-dehydrogenase activity
CJO90_RS22350	COG3039	Transposase
CJO90_RS22375	COG5444	nuclease activity
CJO90_RS22390	COG2831	hemolysin activation secretion protein
CJO90_RS22400	COG0673	inositol 2-dehydrogenase activity
CJO90_RS22525	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
CJO90_RS22530	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
CJO90_RS22535	COG1877	trehalose-phosphatase activity
CJO90_RS22540	COG0380	Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose-6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor
CJO90_RS22545	COG1846	Transcriptional regulator
CJO90_RS22550	COG1764	response to oxidative stress
CJO90_RS22565	COG0583	DNA-binding transcription factor activity
CJO90_RS22575	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CJO90_RS22620	COG2030	dehydratase
CJO90_RS22640	COG0604	alcohol dehydrogenase
CJO90_RS22640	COG1028	Short-chain dehydrogenase reductase Sdr
CJO90_RS22640	COG3321	synthase
CJO90_RS22660	COG1064	alcohol dehydrogenase
CJO90_RS22685	COG3967	Belongs to the short-chain dehydrogenases reductases (SDR) family
CJO90_RS22715	COG1064	alcohol dehydrogenase
CJO90_RS22725	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
CJO90_RS22730	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CJO90_RS22735	COG0640	Transcriptional regulator
CJO90_RS22745	COG3039	Transposase
CJO90_RS22770	COG5444	nuclease activity
CJO90_RS22790	COG2197	response regulator
CJO90_RS22800	COG2066	Belongs to the glutaminase family
CJO90_RS22805	COG4149	molybdate abc transporter
CJO90_RS22810	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
CJO90_RS22825	COG5001	Diguanylate cyclase
CJO90_RS22825	COG3300	MHYT domain
CJO90_RS22845	COG3813	Protein conserved in bacteria
CJO90_RS22865	COG0745	RESPONSE REGULATOR receiver
CJO90_RS22870	COG2205	protein histidine kinase activity
CJO90_RS22900	COG1858	cytochrome C peroxidase
CJO90_RS22920	COG1253	flavin adenine dinucleotide binding
CJO90_RS22925	COG1858	cytochrome C peroxidase
CJO90_RS22955	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CJO90_RS22955	COG2205	protein histidine kinase activity
CJO90_RS22970	COG2274	protein secretion by the type I secretion system
CJO90_RS22995	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
CJO90_RS23010	COG0800	Aldolase
CJO90_RS23015	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CJO90_RS23020	COG2197	response regulator
CJO90_RS23085	COG1294	oxidase, subunit
CJO90_RS23090	COG1271	oxidase subunit
CJO90_RS23095	COG5001	Diguanylate cyclase
CJO90_RS23095	COG3300	MHYT domain
CJO90_RS23100	COG0840	transmembrane signaling receptor activity
CJO90_RS23110	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CJO90_RS23140	COG0243	molybdopterin cofactor binding
CJO90_RS23145	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CJO90_RS23155	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CJO90_RS23160	COG2223	nitrite transmembrane transporter activity
CJO90_RS23165	COG0840	transmembrane signaling receptor activity
CJO90_RS23170	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
CJO90_RS23180	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CJO90_RS23205	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
CJO90_RS23210	COG0436	Aminotransferase
CJO90_RS23215	COG0473	3-isopropylmalate dehydrogenase activity
CJO90_RS23215	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
CJO90_RS23245	COG3039	Transposase
CJO90_RS23255	COG2951	lytic endotransglycosylase activity
CJO90_RS23265	COG1271	oxidase subunit
CJO90_RS23270	COG1294	oxidase, subunit
CJO90_RS23275	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
CJO90_RS23285	COG0251	oxidation-reduction process
CJO90_RS23320	COG3550	peptidyl-serine autophosphorylation
CJO90_RS23340	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
CJO90_RS23360	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
CJO90_RS23365	COG0730	response to heat
CJO90_RS23370	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CJO90_RS23385	COG0730	response to heat
CJO90_RS23415	COG0668	transmembrane transport
CJO90_RS23420	COG1742	UPF0060 membrane protein
CJO90_RS23440	COG0477	Major facilitator Superfamily
CJO90_RS23445	COG0114	fumarate hydratase activity
CJO90_RS23470	COG1621	beta-fructofuranosidase activity
CJO90_RS23480	COG1609	Transcriptional regulator
CJO90_RS23515	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
CJO90_RS23535	COG3766	membrane
CJO90_RS23555	COG0683	leucine binding
CJO90_RS23580	COG4262	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
CJO90_RS23655	COG0840	transmembrane signaling receptor activity
CJO90_RS23660	COG0567	Dehydrogenase, E1 component
CJO90_RS23665	COG0204	Acyl-transferase
CJO90_RS23680	COG4263	nitrous-oxide reductase activity
CJO90_RS23730	COG2831	hemolysin activation secretion protein
CJO90_RS23765	COG2824	Alkylphosphonate utilization operon protein PhnA
CJO90_RS23775	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CJO90_RS23785	COG0762	integral membrane protein
CJO90_RS23810	COG1191	sigma factor activity
CJO90_RS23825	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CJO90_RS23835	COG1309	transcriptional regulator
CJO90_RS23840	COG2271	Major facilitator Superfamily
CJO90_RS23845	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
CJO90_RS23850	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
CJO90_RS23855	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CJO90_RS23865	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
CJO90_RS23870	COG0745	RESPONSE REGULATOR receiver
CJO90_RS23875	COG2201	protein-glutamate methylesterase activity
CJO90_RS23880	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
CJO90_RS23890	COG0840	transmembrane signaling receptor activity
CJO90_RS23895	COG0835	chemotaxis
CJO90_RS23905	COG0745	RESPONSE REGULATOR receiver
CJO90_RS23910	COG1360	Flagellar Motor Protein
CJO90_RS23945	COG0477	Major facilitator Superfamily
CJO90_RS23950	COG2267	carboxylic ester hydrolase activity
CJO90_RS23955	COG0300	oxidoreductase activity
CJO90_RS23955	COG3321	synthase
CJO90_RS23955	COG1028	Short-chain dehydrogenase reductase Sdr
CJO90_RS23955	COG0318	PFAM AMP-dependent synthetase and ligase
CJO90_RS23955	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CJO90_RS23965	COG1804	L-carnitine dehydratase bile acid-inducible protein F
CJO90_RS23975	COG0644	oxidoreductase
CJO90_RS23980	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
CJO90_RS23985	COG3486	L-lysine 6-monooxygenase (NADPH) activity
CJO90_RS24015	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CJO90_RS24015	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
CJO90_RS24050	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CJO90_RS24050	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CJO90_RS24055	COG1045	serine acetyltransferase
CJO90_RS24065	COG2205	protein histidine kinase activity
CJO90_RS24090	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CJO90_RS24100	COG0469	pyruvate kinase activity
CJO90_RS24125	COG2205	protein histidine kinase activity
CJO90_RS24130	COG0745	RESPONSE REGULATOR receiver
CJO90_RS24140	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CJO90_RS24150	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
CJO90_RS24175	COG1136	(ABC) transporter
CJO90_RS24180	COG1136	(ABC) transporter
CJO90_RS24180	COG0577	efflux transmembrane transporter activity
CJO90_RS24200	COG3039	Transposase
CJO90_RS24235	COG0667	Aldo Keto reductase
CJO90_RS24305	COG2192	nodulation
CJO90_RS24320	COG2192	nodulation
CJO90_RS24370	COG3039	Transposase
CJO90_RS24395	COG3256	nitric oxide reductase
CJO90_RS24400	COG2188	Transcriptional regulator
CJO90_RS24405	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
CJO90_RS24410	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CJO90_RS24445	COG0583	DNA-binding transcription factor activity
CJO90_RS24525	COG0705	Rhomboid family
CJO90_RS24550	COG3491	Belongs to the iron ascorbate-dependent oxidoreductase family
CJO90_RS24570	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CJO90_RS24585	COG3210	domain, Protein
CJO90_RS24630	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CJO90_RS24635	COG0642	Histidine kinase
CJO90_RS24655	COG0837	glucose binding
CJO90_RS24665	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
CJO90_RS24675	COG0589	response to stress
CJO90_RS24690	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
CJO90_RS24695	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
CJO90_RS24705	COG1845	cytochrome c oxidase, subunit III
CJO90_RS24730	COG2271	Major facilitator Superfamily
CJO90_RS24745	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CJO90_RS24755	COG0765	amino acid transport
CJO90_RS24760	COG0010	Belongs to the arginase family
CJO90_RS24765	COG2197	response regulator
CJO90_RS24800	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CJO90_RS24805	COG1012	belongs to the aldehyde dehydrogenase family
CJO90_RS24815	COG0583	DNA-binding transcription factor activity
CJO90_RS24840	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CJO90_RS24845	COG2814	Major facilitator Superfamily
CJO90_RS24860	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CJO90_RS24925	COG1012	belongs to the aldehyde dehydrogenase family
CJO90_RS24930	COG0473	3-isopropylmalate dehydrogenase activity
CJO90_RS24940	COG2271	Major facilitator Superfamily
CJO90_RS24945	COG2721	sulfolactate sulfo-lyase activity
CJO90_RS24965	COG3969	phosphoadenosine phosphosulfate
CJO90_RS24970	COG5295	Hep Hag repeat protein
CJO90_RS24970	COG5295	Hep Hag repeat protein
CJO90_RS24980	COG0784	Response regulator, receiver
CJO90_RS24980	COG2205	protein histidine kinase activity
CJO90_RS24985	COG4251	negative regulation of phosphorylation
CJO90_RS24985	COG5001	Diguanylate cyclase
CJO90_RS24985	COG3706	GGDEF domain
CJO90_RS24985	COG2203	Gaf domain
CJO90_RS25030	COG1513	Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide
CJO90_RS25040	COG4213	ABC transporter substrate-binding protein
CJO90_RS25045	COG1129	ABC transporter
CJO90_RS25050	COG4214	carbohydrate transport
CJO90_RS25055	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CJO90_RS25060	COG1609	Transcriptional regulator
CJO90_RS25070	COG2207	Transcriptional regulator
CJO90_RS25150	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CJO90_RS25160	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CJO90_RS25170	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
CJO90_RS25195	COG2204	response regulator
CJO90_RS25210	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
CJO90_RS25230	COG2205	protein histidine kinase activity
CJO90_RS25240	COG2252	PERMEase