locus-tag class description RB10002 PF00107 Zinc-binding dehydrogenase RB10002 PF08240 Alcohol dehydrogenase GroES-like domain RB10004 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RB10006 PF01243 Pyridoxamine 5'-phosphate oxidase RB10006 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region RB10007 PF02622 Uncharacterized ACR, COG1678 RB10025 PF08379 Bacterial transglutaminase-like N-terminal region RB10025 PF01841 Transglutaminase-like superfamily RB10026 PF14403 Circularly permuted ATP-grasp type 2 RB10026 PF04168 A predicted alpha-helical domain with a conserved ER motif. RB10030 PF14403 Circularly permuted ATP-grasp type 2 RB10049 PF04542 Sigma-70 region 2 RB10049 PF08281 Sigma-70, region 4 RB10060 PF01022 Bacterial regulatory protein, arsR family RB10061 PF09269 Domain of unknown function (DUF1967) RB10061 PF01018 GTP1/OBG RB10061 PF01926 50S ribosome-binding GTPase RB10062 PF01266 FAD dependent oxidoreductase RB10078 PF10459 Peptidase S46 RB10081 PF00664 ABC transporter transmembrane region RB10081 PF00005 ABC transporter RB10088 PF06778 Chlorite dismutase RB10089 PF01261 Xylose isomerase-like TIM barrel RB1009 PF01966 HD domain RB1009 PF11871 Domain of unknown function (DUF3391) RB10092 PF01557 Fumarylacetoacetate (FAA) hydrolase family RB10099 PF14245 Type IV pilin PilA RB10099 PF07963 Prokaryotic N-terminal methylation motif RB101 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region RB101 PF00326 Prolyl oligopeptidase family RB10106 PF03091 CutA1 divalent ion tolerance protein RB10108 PF00712 DNA polymerase III beta subunit, N-terminal domain RB10108 PF02767 DNA polymerase III beta subunit, central domain RB10108 PF02768 DNA polymerase III beta subunit, C-terminal domain RB10112 PF00977 Histidine biosynthesis protein RB10113 PF01808 AICARFT/IMPCHase bienzyme RB10113 PF02142 MGS-like domain RB10114 PF00218 Indole-3-glycerol phosphate synthase RB10116 PF00884 Sulfatase RB10116 PF16385 Domain of unknown function RB10119 PF00069 Protein kinase domain RB10119 PF03793 PASTA domain RB10127 PF07995 Glucose / Sorbosone dehydrogenase RB10129 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RB10129 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase RB10133 PF03793 PASTA domain RB10133 PF00069 Protein kinase domain RB10134 PF00829 Ribosomal prokaryotic L21 protein RB10140 PF01740 STAS domain RB10140 PF00916 Sulfate permease family RB10144 PF13472 GDSL-like Lipase/Acylhydrolase family RB10144 PF07859 alpha/beta hydrolase fold RB10160 PF00069 Protein kinase domain RB10160 PF03793 PASTA domain RB10170 PF00291 Pyridoxal-phosphate dependent enzyme RB10172 PF00171 Aldehyde dehydrogenase family RB10177 PF01969 Protein of unknown function DUF111 RB10180 PF01432 Peptidase family M3 RB10180 PF08439 Oligopeptidase F RB10181 PF00005 ABC transporter RB10192 PF01979 Amidohydrolase family RB10206 PF00119 ATP synthase A chain RB10209 PF00137 ATP synthase subunit C RB10211 PF00430 ATP synthase B/B' CF(0) RB10213 PF00213 ATP synthase delta (OSCP) subunit RB10215 PF00306 ATP synthase alpha/beta chain, C terminal domain RB10215 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RB10215 PF02874 ATP synthase alpha/beta family, beta-barrel domain RB10216 PF00231 ATP synthase RB10217 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RB10217 PF02874 ATP synthase alpha/beta family, beta-barrel domain RB10219 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RB10227 PF00437 Type II/IV secretion system protein RB10227 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain RB10228 PF00437 Type II/IV secretion system protein RB10231 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain RB10231 PF00591 Glycosyl transferase family, a/b domain RB10231 PF02885 Glycosyl transferase family, helical bundle domain RB10232 PF00884 Sulfatase RB10235 PF00857 Isochorismatase family RB10242 PF00226 DnaJ domain RB10242 PF01556 DnaJ C terminal domain RB10245 PF00561 alpha/beta hydrolase fold RB10255 PF00924 Mechanosensitive ion channel RB10255 PF05552 Conserved TM helix RB10258 PF01975 Survival protein SurE RB10261 PF02599 Global regulator protein family RB10264 PF01008 Initiation factor 2 subunit family RB10266 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RB10266 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RB1027 PF13439 Glycosyltransferase Family 4 RB10270 PF01593 Flavin containing amine oxidoreductase RB10271 PF00075 RNase H RB10275 PF06968 Biotin and Thiamin Synthesis associated domain RB10275 PF04055 Radical SAM superfamily RB10277 PF02887 Pyruvate kinase, alpha/beta domain RB10277 PF00224 Pyruvate kinase, barrel domain RB10277 PF00391 PEP-utilising enzyme, mobile domain RB10279 PF00011 Hsp20/alpha crystallin family RB10283 PF00011 Hsp20/alpha crystallin family RB10295 PF09176 Methylene-tetrahydromethanopterin dehydrogenase, N-terminal RB10297 PF08714 Formaldehyde-activating enzyme (Fae) RB10307 PF01212 Beta-eliminating lyase RB10308 PF00072 Response regulator receiver domain RB10308 PF00990 Diguanylate cyclase, GGDEF domain RB10309 PF00083 Sugar (and other) transporter RB10310 PF00361 Proton-conducting membrane transporter RB10313 PF00361 Proton-conducting membrane transporter RB10313 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RB10313 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus RB10314 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) RB10322 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB10322 PF00512 His Kinase A (phospho-acceptor) domain RB10322 PF00989 PAS fold RB10323 PF02954 Bacterial regulatory protein, Fis family RB10323 PF00072 Response regulator receiver domain RB10323 PF00158 Sigma-54 interaction domain RB10326 PF01740 STAS domain RB10326 PF00916 Sulfate permease family RB10329 PF03793 PASTA domain RB10329 PF00069 Protein kinase domain RB10330 PF00672 HAMP domain RB10330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB10330 PF00512 His Kinase A (phospho-acceptor) domain RB10330 PF01627 Hpt domain RB10330 PF00072 Response regulator receiver domain RB10330 PF17149 Periplasmic sensor domain found in signal transduction proteins RB10333 PF00069 Protein kinase domain RB10335 PF01255 Putative undecaprenyl diphosphate synthase RB10339 PF04542 Sigma-70 region 2 RB10339 PF04539 Sigma-70 region 3 RB10339 PF04545 Sigma-70, region 4 RB10339 PF03979 Sigma-70 factor, region 1.1 RB10339 PF00140 Sigma-70 factor, region 1.2 RB10359 PF04452 RNA methyltransferase RB10364 PF02190 ATP-dependent protease La (LON) substrate-binding domain RB10364 PF05362 Lon protease (S16) C-terminal proteolytic domain RB10364 PF00004 ATPase family associated with various cellular activities (AAA) RB10370 PF13419 Haloacid dehalogenase-like hydrolase RB10374 PF01252 Signal peptidase (SPase) II RB10378 PF00085 Thioredoxin RB10388 PF00069 Protein kinase domain RB10388 PF03793 PASTA domain RB1039 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RB1039 PF02403 Seryl-tRNA synthetase N-terminal domain RB10398 PF00501 AMP-binding enzyme RB10398 PF14535 AMP-binding enzyme C-terminal domain RB10401 PF02706 Chain length determinant protein RB10401 PF13807 G-rich domain on putative tyrosine kinase RB10401 PF13614 AAA domain RB10434 PF13439 Glycosyltransferase Family 4 RB10434 PF00534 Glycosyl transferases group 1 RB10436 PF13439 Glycosyltransferase Family 4 RB10436 PF00534 Glycosyl transferases group 1 RB10439 PF02397 Bacterial sugar transferase RB10442 PF04055 Radical SAM superfamily RB10442 PF13282 Domain of unknown function (DUF4070) RB10442 PF02310 B12 binding domain RB10446 PF02801 Beta-ketoacyl synthase, C-terminal domain RB10446 PF00109 Beta-ketoacyl synthase, N-terminal domain RB10446 PF16197 Ketoacyl-synthetase C-terminal extension RB10446 PF00698 Acyl transferase domain RB10446 PF14765 Polyketide synthase dehydratase RB10446 PF00550 Phosphopantetheine attachment site RB10446 PF08659 KR domain RB10446 PF02801 Beta-ketoacyl synthase, C-terminal domain RB10446 PF00109 Beta-ketoacyl synthase, N-terminal domain RB10446 PF16197 Ketoacyl-synthetase C-terminal extension RB10446 PF00698 Acyl transferase domain RB10446 PF14765 Polyketide synthase dehydratase RB10446 PF00550 Phosphopantetheine attachment site RB10446 PF08659 KR domain RB10458 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RB10459 PF01593 Flavin containing amine oxidoreductase RB1046 PF00270 DEAD/DEAH box helicase RB1046 PF17191 RecG wedge domain RB1046 PF00271 Helicase conserved C-terminal domain RB10465 PF00483 Nucleotidyl transferase RB10466 PF07977 FabA-like domain RB10468 PF01176 Translation initiation factor 1A / IF-1 RB10469 PF00380 Ribosomal protein S9/S16 RB10471 PF00572 Ribosomal protein L13 RB10487 PF00570 HRDC domain RB10487 PF00270 DEAD/DEAH box helicase RB10487 PF16124 RecQ zinc-binding RB10487 PF09382 RQC domain RB10487 PF00271 Helicase conserved C-terminal domain RB10488 PF00672 HAMP domain RB10488 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB10488 PF17149 Periplasmic sensor domain found in signal transduction proteins RB10488 PF00072 Response regulator receiver domain RB10488 PF01627 Hpt domain RB10488 PF00512 His Kinase A (phospho-acceptor) domain RB10491 PF00072 Response regulator receiver domain RB10491 PF02954 Bacterial regulatory protein, Fis family RB10491 PF00158 Sigma-54 interaction domain RB10500 PF00162 Phosphoglycerate kinase RB10503 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RB10507 PF14508 Glycosyl-hydrolase 97 N-terminal RB10507 PF10566 Glycoside hydrolase 97 RB10507 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation RB10508 PF00994 Probable molybdopterin binding domain RB10508 PF02464 Competence-damaged protein RB10510 PF02224 Cytidylate kinase RB10517 PF07726 ATPase family associated with various cellular activities (AAA) RB10517 PF17863 AAA lid domain RB10519 PF17782 DprA winged helix domain RB10519 PF02481 DNA recombination-mediator protein A RB10524 PF17674 HHH domain RB10524 PF09371 Tex-like protein N-terminal domain RB10524 PF16921 Tex protein YqgF-like domain RB10524 PF00575 S1 RNA binding domain RB10533 PF01189 16S rRNA methyltransferase RsmB/F RB10533 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF RB10533 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF RB10536 PF04026 SpoVG RB10537 PF08544 GHMP kinases C terminal RB10539 PF00132 Bacterial transferase hexapeptide (six repeats) RB10539 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD RB10547 PF03129 Anticodon binding domain RB10547 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RB10553 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RB10554 PF02910 Fumarate reductase flavoprotein C-term RB10554 PF00890 FAD binding domain RB10555 PF13183 4Fe-4S dicluster domain RB10555 PF13085 2Fe-2S iron-sulfur cluster binding domain RB10566 PF02447 GntP family permease RB10567 PF04376 Arginine-tRNA-protein transferase, N terminus RB10567 PF04377 Arginine-tRNA-protein transferase, C terminus RB10586 PF00557 Metallopeptidase family M24 RB10586 PF01321 Creatinase/Prolidase N-terminal domain RB10590 PF01757 Acyltransferase family RB10591 PF00365 Phosphofructokinase RB10592 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RB10592 PF00364 Biotin-requiring enzyme RB10592 PF02436 Conserved carboxylase domain RB10592 PF02785 Biotin carboxylase C-terminal domain RB10592 PF00682 HMGL-like RB10592 PF00289 Biotin carboxylase, N-terminal domain RB10599 PF16385 Domain of unknown function RB10599 PF00884 Sulfatase RB10612 PF00884 Sulfatase RB10614 PF00534 Glycosyl transferases group 1 RB10614 PF13439 Glycosyltransferase Family 4 RB10616 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus RB10616 PF08666 SAF domain RB10617 PF00549 CoA-ligase RB10617 PF08442 ATP-grasp domain RB10619 PF02629 CoA binding domain RB10619 PF00549 CoA-ligase RB10627 PF00166 Chaperonin 10 Kd subunit RB10629 PF00118 TCP-1/cpn60 chaperonin family RB1063 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RB1063 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RB10638 PF00318 Ribosomal protein S2 RB10640 PF00889 Elongation factor TS RB10644 PF00460 Flagella basal body rod protein RB10644 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RB1065 PF00543 Nitrogen regulatory protein P-II RB10650 PF00291 Pyridoxal-phosphate dependent enzyme RB10653 PF00266 Aminotransferase class-V RB10654 PF01467 Cytidylyltransferase-like RB10663 PF00149 Calcineurin-like phosphoesterase RB10683 PF01207 Dihydrouridine synthase (Dus) RB10693 PF01235 Sodium:alanine symporter family RB10700 PF01618 MotA/TolQ/ExbB proton channel family RB10711 PF01653 NAD-dependent DNA ligase adenylation domain RB10711 PF12826 Helix-hairpin-helix motif RB10711 PF03119 NAD-dependent DNA ligase C4 zinc finger domain RB10711 PF00533 BRCA1 C Terminus (BRCT) domain RB10711 PF03120 NAD-dependent DNA ligase OB-fold domain RB10721 PF12795 Mechanosensitive ion channel porin domain RB10721 PF12794 Mechanosensitive ion channel inner membrane domain 1 RB10721 PF00924 Mechanosensitive ion channel RB10727 PF05067 Manganese containing catalase RB10733 PF13823 Alcohol dehydrogenase GroES-associated RB10733 PF00107 Zinc-binding dehydrogenase RB10733 PF08240 Alcohol dehydrogenase GroES-like domain RB1074 PF02653 Branched-chain amino acid transport system / permease component RB10767 PF01420 Type I restriction modification DNA specificity domain RB10768 PF02384 N-6 DNA Methylase RB10770 PF00271 Helicase conserved C-terminal domain RB10770 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) RB10770 PF08463 EcoEI R protein C-terminal RB10770 PF04851 Type III restriction enzyme, res subunit RB10787 PF05161 MOFRL family RB10787 PF13660 Domain of unknown function (DUF4147) RB1079 PF05191 Adenylate kinase, active site lid RB10793 PF02954 Bacterial regulatory protein, Fis family RB10793 PF01590 GAF domain RB10793 PF00158 Sigma-54 interaction domain RB10797 PF02230 Phospholipase/Carboxylesterase RB10805 PF00465 Iron-containing alcohol dehydrogenase RB10816 PF09115 DNA polymerase III, delta subunit, C terminal RB10817 PF02502 Ribose/Galactose Isomerase RB10818 PF01451 Low molecular weight phosphotyrosine protein phosphatase RB10826 PF00574 Clp protease RB10829 PF00574 Clp protease RB10834 PF14698 Argininosuccinate lyase C-terminal RB10834 PF00206 Lyase RB10852 PF02934 GatB/GatE catalytic domain RB10852 PF02637 GatB domain RB10855 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RB10855 PF13378 Enolase C-terminal domain-like RB10876 PF00005 ABC transporter RB10876 PF17755 UvrA DNA-binding domain RB10876 PF17760 UvrA interaction domain RB10878 PF01066 CDP-alcohol phosphatidyltransferase RB10880 PF00919 Uncharacterized protein family UPF0004 RB10880 PF04055 Radical SAM superfamily RB10880 PF18693 TRAM domain RB10883 PF01336 OB-fold nucleic acid binding domain RB10883 PF00152 tRNA synthetases class II (D, K and N) RB10887 PF02543 Carbamoyltransferase N-terminus RB10887 PF16861 Carbamoyltransferase C-terminus RB10892 PF00909 Ammonium Transporter Family RB10892 PF00672 HAMP domain RB10894 PF00291 Pyridoxal-phosphate dependent enzyme RB10909 PF00814 Glycoprotease family RB10911 PF07244 Surface antigen variable number repeat RB10911 PF01103 Surface antigen RB1092 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RB1092 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RB1092 PF00378 Enoyl-CoA hydratase/isomerase RB10921 PF09370 Phosphoenolpyruvate hydrolase-like RB10924 PF03705 CheR methyltransferase, all-alpha domain RB10924 PF01739 CheR methyltransferase, SAM binding domain RB10924 PF01339 CheB methylesterase RB10924 PF08448 PAS fold RB10934 PF05532 CsbD-like RB10966 PF01679 Proteolipid membrane potential modulator RB10967 PF16884 N-terminal domain of oxidoreductase RB10967 PF00107 Zinc-binding dehydrogenase RB10968 PF00171 Aldehyde dehydrogenase family RB10971 PF00106 short chain dehydrogenase RB10978 PF00893 Small Multidrug Resistance protein RB10984 PF00873 AcrB/AcrD/AcrF family RB10985 PF01966 HD domain RB10987 PF02567 Phenazine biosynthesis-like protein RB10995 PF03793 PASTA domain RB10995 PF00069 Protein kinase domain RB10996 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase RB10996 PF03033 Glycosyltransferase family 28 N-terminal domain RB110 PF00884 Sulfatase RB1100 PF14102 Capsule biosynthesis CapC RB11009 PF00667 FAD binding domain RB11009 PF00258 Flavodoxin RB11009 PF00175 Oxidoreductase NAD-binding domain RB11021 PF12704 MacB-like periplasmic core domain RB11021 PF00005 ABC transporter RB11021 PF02687 FtsX-like permease family RB11027 PF12704 MacB-like periplasmic core domain RB11027 PF02687 FtsX-like permease family RB11027 PF00005 ABC transporter RB1103 PF08245 Mur ligase middle domain RB11030 PF12704 MacB-like periplasmic core domain RB11030 PF02687 FtsX-like permease family RB11030 PF00005 ABC transporter RB11036 PF02954 Bacterial regulatory protein, Fis family RB11036 PF00072 Response regulator receiver domain RB11036 PF00158 Sigma-54 interaction domain RB11037 PF00512 His Kinase A (phospho-acceptor) domain RB11037 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB11037 PF00989 PAS fold RB11047 PF03976 Polyphosphate kinase 2 (PPK2) RB11050 PF02690 Na+/Pi-cotransporter RB11063 PF00484 Carbonic anhydrase RB11069 PF03471 Transporter associated domain RB11069 PF00999 Sodium/hydrogen exchanger family RB11072 PF00873 AcrB/AcrD/AcrF family RB11073 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RB11077 PF02082 Transcriptional regulator RB11090 PF00072 Response regulator receiver domain RB11090 PF00486 Transcriptional regulatory protein, C terminal RB11091 PF00072 Response regulator receiver domain RB11091 PF13426 PAS domain RB11091 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB11100 PF01325 Iron dependent repressor, N-terminal DNA binding domain RB11100 PF02742 Iron dependent repressor, metal binding and dimerisation domain RB11112 PF01588 Putative tRNA binding domain RB11116 PF00884 Sulfatase RB11118 PF13378 Enolase C-terminal domain-like RB11118 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RB11123 PF00884 Sulfatase RB11123 PF16385 Domain of unknown function RB11127 PF00884 Sulfatase RB11133 PF00413 Matrixin RB11135 PF04542 Sigma-70 region 2 RB11135 PF08281 Sigma-70, region 4 RB11136 PF00069 Protein kinase domain RB11136 PF03793 PASTA domain RB11150 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RB11151 PF00107 Zinc-binding dehydrogenase RB11151 PF08240 Alcohol dehydrogenase GroES-like domain RB11152 PF00873 AcrB/AcrD/AcrF family RB11155 PF02321 Outer membrane efflux protein RB11157 PF03960 ArsC family RB11165 PF02335 Cytochrome c552 RB11167 PF03264 NapC/NirT cytochrome c family, N-terminal region RB11174 PF00581 Rhodanese-like domain RB11174 PF00753 Metallo-beta-lactamase superfamily RB11179 PF00582 Universal stress protein family RB11183 PF00582 Universal stress protein family RB11186 PF00158 Sigma-54 interaction domain RB11186 PF00072 Response regulator receiver domain RB11186 PF02954 Bacterial regulatory protein, Fis family RB11191 PF00512 His Kinase A (phospho-acceptor) domain RB11191 PF00989 PAS fold RB11191 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB11194 PF03831 PhnA domain RB11194 PF08274 PhnA Zinc-Ribbon RB11201 PF00072 Response regulator receiver domain RB11203 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB11203 PF01590 GAF domain RB11203 PF00512 His Kinase A (phospho-acceptor) domain RB11203 PF00360 Phytochrome region RB11203 PF08446 PAS fold RB11205 PF07992 Pyridine nucleotide-disulphide oxidoreductase RB11205 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RB11207 PF09335 SNARE associated Golgi protein RB11216 PF00037 4Fe-4S binding domain RB11219 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family RB11225 PF00581 Rhodanese-like domain RB11225 PF11127 Protein of unknown function (DUF2892) RB11226 PF01925 Sulfite exporter TauE/SafE RB11227 PF00753 Metallo-beta-lactamase superfamily RB11230 PF00210 Ferritin-like domain RB11238 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RB11240 PF00873 AcrB/AcrD/AcrF family RB11242 PF04542 Sigma-70 region 2 RB11242 PF08281 Sigma-70, region 4 RB11244 PF00069 Protein kinase domain RB11244 PF03793 PASTA domain RB1125 PF00664 ABC transporter transmembrane region RB1125 PF00005 ABC transporter RB1125 PF03412 Peptidase C39 family RB11252 PF00258 Flavodoxin RB11252 PF00175 Oxidoreductase NAD-binding domain RB11252 PF00067 Cytochrome P450 RB11252 PF00667 FAD binding domain RB11253 PF01066 CDP-alcohol phosphatidyltransferase RB11258 PF09335 SNARE associated Golgi protein RB11260 PF01258 Prokaryotic dksA/traR C4-type zinc finger RB11262 PF00781 Diacylglycerol kinase catalytic domain RB11266 PF00149 Calcineurin-like phosphoesterase RB11269 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RB11273 PF07690 Major Facilitator Superfamily RB11286 PF03073 TspO/MBR family RB1129 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) RB11313 PF07929 Plasmid pRiA4b ORF-3-like protein RB11321 PF00486 Transcriptional regulatory protein, C terminal RB11321 PF03704 Bacterial transcriptional activator domain RB11321 PF00931 NB-ARC domain RB11334 PF00069 Protein kinase domain RB1134 PF00361 Proton-conducting membrane transporter RB1134 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RB1134 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus RB11371 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) RB11371 PF18766 SWI2/SNF2 ATPase RB11371 PF11867 Domain of unknown function (DUF3387) RB11377 PF01420 Type I restriction modification DNA specificity domain RB11379 PF02384 N-6 DNA Methylase RB11395 PF03073 TspO/MBR family RB1140 PF00072 Response regulator receiver domain RB1140 PF00196 Bacterial regulatory proteins, luxR family RB11401 PF04851 Type III restriction enzyme, res subunit RB11401 PF00271 Helicase conserved C-terminal domain RB11407 PF00271 Helicase conserved C-terminal domain RB11407 PF04851 Type III restriction enzyme, res subunit RB11407 PF08463 EcoEI R protein C-terminal RB11407 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) RB11411 PF02384 N-6 DNA Methylase RB11411 PF12161 HsdM N-terminal domain RB11438 PF02810 SEC-C motif RB11438 PF07516 SecA Wing and Scaffold domain RB11438 PF07517 SecA DEAD-like domain RB11438 PF01043 SecA preprotein cross-linking domain RB1147 PF00437 Type II/IV secretion system protein RB11482 PF00753 Metallo-beta-lactamase superfamily RB11489 PF08021 Siderophore-interacting FAD-binding domain RB11489 PF04954 Siderophore-interacting protein RB11494 PF05368 NmrA-like family RB11497 PF10017 Histidine-specific methyltransferase, SAM-dependent RB11498 PF03781 Sulfatase-modifying factor enzyme 1 RB11498 PF12867 DinB superfamily RB115 PF14245 Type IV pilin PilA RB115 PF07963 Prokaryotic N-terminal methylation motif RB11502 PF00753 Metallo-beta-lactamase superfamily RB11502 PF14863 Alkyl sulfatase dimerisation RB11502 PF14864 Alkyl sulfatase C-terminal RB11510 PF01588 Putative tRNA binding domain RB11512 PF02567 Phenazine biosynthesis-like protein RB11516 PF01966 HD domain RB11550 PF00881 Nitroreductase family RB11563 PF00005 ABC transporter RB11579 PF00308 Bacterial dnaA protein RB11579 PF08299 Bacterial dnaA protein helix-turn-helix RB11579 PF11638 DnaA N-terminal domain RB11582 PF00266 Aminotransferase class-V RB11587 PF04079 Segregation and condensation complex subunit ScpB RB11594 PF00072 Response regulator receiver domain RB11595 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain RB11595 PF00437 Type II/IV secretion system protein RB11597 PF00482 Type II secretion system (T2SS), protein F RB11604 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB11604 PF00989 PAS fold RB11604 PF00512 His Kinase A (phospho-acceptor) domain RB11618 PF12161 HsdM N-terminal domain RB11618 PF02384 N-6 DNA Methylase RB11619 PF01420 Type I restriction modification DNA specificity domain RB11622 PF04851 Type III restriction enzyme, res subunit RB11622 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) RB11622 PF00271 Helicase conserved C-terminal domain RB11622 PF08463 EcoEI R protein C-terminal RB11626 PF07517 SecA DEAD-like domain RB11626 PF07516 SecA Wing and Scaffold domain RB11626 PF02810 SEC-C motif RB11626 PF01043 SecA preprotein cross-linking domain RB1164 PF02472 Biopolymer transport protein ExbD/TolR RB11642 PF12161 HsdM N-terminal domain RB11642 PF02384 N-6 DNA Methylase RB11643 PF01420 Type I restriction modification DNA specificity domain RB1165 PF01618 MotA/TolQ/ExbB proton channel family RB11650 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RB11663 PF00083 Sugar (and other) transporter RB11668 PF00072 Response regulator receiver domain RB11668 PF08448 PAS fold RB11668 PF00512 His Kinase A (phospho-acceptor) domain RB11668 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB11668 PF13188 PAS domain RB11669 PF00072 Response regulator receiver domain RB11669 PF02954 Bacterial regulatory protein, Fis family RB11669 PF00158 Sigma-54 interaction domain RB11673 PF00009 Elongation factor Tu GTP binding domain RB11673 PF06421 GTP-binding protein LepA C-terminus RB11673 PF00679 Elongation factor G C-terminus RB11688 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) RB11690 PF07517 SecA DEAD-like domain RB11690 PF02810 SEC-C motif RB11690 PF01043 SecA preprotein cross-linking domain RB11690 PF07516 SecA Wing and Scaffold domain RB11693 PF01784 NIF3 (NGG1p interacting factor 3) RB1170 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RB11706 PF17820 PDZ domain RB11706 PF13180 PDZ domain RB11712 PF00176 SNF2 family N-terminal domain RB11712 PF00271 Helicase conserved C-terminal domain RB11712 PF04434 SWIM zinc finger RB11728 PF01261 Xylose isomerase-like TIM barrel RB11749 PF01527 Transposase RB11750 PF13276 HTH-like domain RB11750 PF13333 Integrase core domain RB11750 PF00665 Integrase core domain RB11756 PF13649 Methyltransferase domain RB11762 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RB11762 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RB1178 PF00589 Phage integrase family RB1178 PF02899 Phage integrase, N-terminal SAM-like domain RB11802 PF01527 Transposase RB11803 PF13333 Integrase core domain RB11803 PF13276 HTH-like domain RB11803 PF00665 Integrase core domain RB11811 PF03781 Sulfatase-modifying factor enzyme 1 RB11817 PF01580 FtsK/SpoIIIE family RB11817 PF09397 Ftsk gamma domain RB11817 PF17854 FtsK alpha domain RB11822 PF00571 CBS domain RB11822 PF00478 IMP dehydrogenase / GMP reductase domain RB11832 PF00334 Nucleoside diphosphate kinase RB11847 PF01625 Peptide methionine sulfoxide reductase RB11851 PF00482 Type II secretion system (T2SS), protein F RB11853 PF01227 GTP cyclohydrolase I RB11856 PF00474 Sodium:solute symporter family RB11859 PF03099 Biotin/lipoate A/B protein ligase family RB11859 PF12706 Beta-lactamase superfamily domain RB11863 PF00154 recA bacterial DNA recombination protein RB11876 PF11412 Disulphide bond corrector protein DsbC RB11876 PF02683 Cytochrome C biogenesis protein transmembrane region RB11877 PF10396 GTP-binding protein TrmE N-terminus RB11877 PF01926 50S ribosome-binding GTPase RB11877 PF12631 MnmE helical domain RB11878 PF01625 Peptide methionine sulfoxide reductase RB11879 PF17820 PDZ domain RB11879 PF13180 PDZ domain RB11882 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RB1189 PF01527 Transposase RB1190 PF13333 Integrase core domain RB1190 PF00665 Integrase core domain RB1190 PF13276 HTH-like domain RB11913 PF07726 ATPase family associated with various cellular activities (AAA) RB11913 PF17863 AAA lid domain RB11916 PF01841 Transglutaminase-like superfamily RB11916 PF13559 Domain of unknown function (DUF4129) RB11916 PF11992 Domain of unknown function (DUF3488) RB11919 PF00920 Dehydratase family RB1192 PF00589 Phage integrase family RB1192 PF02899 Phage integrase, N-terminal SAM-like domain RB11920 PF04298 Putative neutral zinc metallopeptidase RB11922 PF04238 Protein of unknown function (DUF420) RB11923 PF02630 SCO1/SenC RB11927 PF07859 alpha/beta hydrolase fold RB11930 PF00005 ABC transporter RB11931 PF01040 UbiA prenyltransferase family RB11941 PF00535 Glycosyl transferase family 2 RB11943 PF01593 Flavin containing amine oxidoreductase RB11945 PF00171 Aldehyde dehydrogenase family RB11947 PF02954 Bacterial regulatory protein, Fis family RB11947 PF00158 Sigma-54 interaction domain RB11947 PF00072 Response regulator receiver domain RB11955 PF03793 PASTA domain RB11955 PF00069 Protein kinase domain RB11958 PF02621 Menaquinone biosynthesis RB11959 PF05173 Dihydrodipicolinate reductase, C-terminus RB11959 PF01113 Dihydrodipicolinate reductase, N-terminus RB11964 PF01883 Iron-sulfur cluster assembly protein RB11975 PF02801 Beta-ketoacyl synthase, C-terminal domain RB11975 PF00109 Beta-ketoacyl synthase, N-terminal domain RB11975 PF00698 Acyl transferase domain RB11975 PF08659 KR domain RB11975 PF08240 Alcohol dehydrogenase GroES-like domain RB11975 PF16197 Ketoacyl-synthetase C-terminal extension RB11975 PF00550 Phosphopantetheine attachment site RB11975 PF14765 Polyketide synthase dehydratase RB11976 PF00486 Transcriptional regulatory protein, C terminal RB11976 PF00072 Response regulator receiver domain RB11981 PF01497 Periplasmic binding protein RB11983 PF01502 Phosphoribosyl-AMP cyclohydrolase RB11985 PF00550 Phosphopantetheine attachment site RB11985 PF16197 Ketoacyl-synthetase C-terminal extension RB11985 PF08240 Alcohol dehydrogenase GroES-like domain RB11985 PF14765 Polyketide synthase dehydratase RB11985 PF08659 KR domain RB11985 PF00109 Beta-ketoacyl synthase, N-terminal domain RB11985 PF00698 Acyl transferase domain RB11985 PF02801 Beta-ketoacyl synthase, C-terminal domain RB11986 PF00512 His Kinase A (phospho-acceptor) domain RB11986 PF01627 Hpt domain RB11986 PF00072 Response regulator receiver domain RB11986 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) RB11986 PF00672 HAMP domain RB11986 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB11988 PF03793 PASTA domain RB11988 PF00069 Protein kinase domain RB11991 PF00850 Histone deacetylase domain RB11998 PF03781 Sulfatase-modifying factor enzyme 1 RB12002 PF04029 2-phosphosulpholactate phosphatase RB12007 PF00875 DNA photolyase RB12007 PF03441 FAD binding domain of DNA photolyase RB12012 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RB12012 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RB12013 PF00696 Amino acid kinase family RB12013 PF01472 PUA domain RB12019 PF00248 Aldo/keto reductase family RB12038 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RB12038 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RB12039 PF01565 FAD binding domain RB12039 PF02913 FAD linked oxidases, C-terminal domain RB12040 PF01565 FAD binding domain RB12042 PF02754 Cysteine-rich domain RB12042 PF13183 4Fe-4S dicluster domain RB12047 PF00270 DEAD/DEAH box helicase RB12047 PF00271 Helicase conserved C-terminal domain RB1205 PF00884 Sulfatase RB12053 PF02472 Biopolymer transport protein ExbD/TolR RB12055 PF01618 MotA/TolQ/ExbB proton channel family RB12061 PF06418 CTP synthase N-terminus RB12061 PF00117 Glutamine amidotransferase class-I RB12081 PF02541 Ppx/GppA phosphatase family RB12087 PF00920 Dehydratase family RB12089 PF00884 Sulfatase RB12092 PF16347 Domain of unknown function (DUF4976) RB12092 PF00884 Sulfatase RB12107 PF00883 Cytosol aminopeptidase family, catalytic domain RB12107 PF02789 Cytosol aminopeptidase family, N-terminal domain RB12108 PF02954 Bacterial regulatory protein, Fis family RB12108 PF00158 Sigma-54 interaction domain RB12108 PF00072 Response regulator receiver domain RB12113 PF02142 MGS-like domain RB12113 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RB12113 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RB12116 PF02811 PHP domain RB12116 PF14579 Helix-hairpin-helix motif RB12116 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RB12116 PF07733 Bacterial DNA polymerase III alpha NTPase domain RB12116 PF11490 DNA polymerase III polC-type N-terminus II RB12116 PF14480 DNA polymerase III polC-type N-terminus I RB12116 PF00929 Exonuclease RB12116 PF01336 OB-fold nucleic acid binding domain RB1212 PF03448 MgtE intracellular N domain RB1212 PF00571 CBS domain RB1212 PF01769 Divalent cation transporter RB12129 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RB12129 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RB12129 PF02824 TGS domain RB12129 PF03129 Anticodon binding domain RB1213 PF01132 Elongation factor P (EF-P) OB domain RB1213 PF08207 Elongation factor P (EF-P) KOW-like domain RB1213 PF09285 Elongation factor P, C-terminal RB12133 PF01546 Peptidase family M20/M25/M40 RB12133 PF07687 Peptidase dimerisation domain RB12137 PF02617 ATP-dependent Clp protease adaptor protein ClpS RB12138 PF04055 Radical SAM superfamily RB12138 PF01938 TRAM domain RB12138 PF00919 Uncharacterized protein family UPF0004 RB1214 PF04055 Radical SAM superfamily RB12145 PF00899 ThiF family RB12148 PF03572 Peptidase family S41 RB12148 PF17804 Tail specific protease N-terminal domain RB12148 PF00595 PDZ domain RB12148 PF11818 C-terminal domain of tail specific protease (DUF3340) RB12160 PF00085 Thioredoxin RB12164 PF00293 NUDIX domain RB12174 PF02119 Flagellar P-ring protein RB12175 PF02107 Flagellar L-ring protein RB12180 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RB12180 PF00460 Flagella basal body rod protein RB12181 PF00460 Flagella basal body rod protein RB12181 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RB12181 PF07559 Flagellar basal body protein FlaE RB12181 PF07196 Flagellin hook IN motif RB12183 PF00990 Diguanylate cyclase, GGDEF domain RB12194 PF01259 SAICAR synthetase RB12197 PF05198 Translation initiation factor IF-3, N-terminal domain RB12197 PF00707 Translation initiation factor IF-3, C-terminal domain RB1220 PF01263 Aldose 1-epimerase RB12251 PF04542 Sigma-70 region 2 RB12251 PF08281 Sigma-70, region 4 RB12256 PF01569 PAP2 superfamily RB12262 PF00042 Globin RB12262 PF00175 Oxidoreductase NAD-binding domain RB12262 PF00970 Oxidoreductase FAD-binding domain RB12279 PF05552 Conserved TM helix RB12279 PF00924 Mechanosensitive ion channel RB12282 PF01594 AI-2E family transporter RB12285 PF13649 Methyltransferase domain RB12290 PF02233 NAD(P) transhydrogenase beta subunit RB12291 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch RB12292 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RB12292 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RB12296 PF00106 short chain dehydrogenase RB1231 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RB1231 PF07992 Pyridine nucleotide-disulphide oxidoreductase RB12310 PF00069 Protein kinase domain RB12310 PF03793 PASTA domain RB12315 PF12464 Maltose acetyltransferase RB12315 PF14602 Hexapeptide repeat of succinyl-transferase RB12325 PF00884 Sulfatase RB12326 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB12326 PF00072 Response regulator receiver domain RB12326 PF13426 PAS domain RB12326 PF08448 PAS fold RB12326 PF00512 His Kinase A (phospho-acceptor) domain RB12327 PF00854 POT family RB1233 PF01479 S4 domain RB1233 PF00163 Ribosomal protein S4/S9 N-terminal domain RB12337 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain RB12337 PF00326 Prolyl oligopeptidase family RB12343 PF00128 Alpha amylase, catalytic domain RB12344 PF00534 Glycosyl transferases group 1 RB1235 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RB1235 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RB12360 PF08244 Glycosyl hydrolases family 32 C terminal RB12360 PF00251 Glycosyl hydrolases family 32 N-terminal domain RB12361 PF00294 pfkB family carbohydrate kinase RB12363 PF13361 UvrD-like helicase C-terminal domain RB12363 PF00580 UvrD/REP helicase N-terminal domain RB12372 PF08281 Sigma-70, region 4 RB12372 PF04542 Sigma-70 region 2 RB12377 PF00398 Ribosomal RNA adenine dimethylase RB12379 PF00677 Lumazine binding domain RB12381 PF00113 Enolase, C-terminal TIM barrel domain RB12381 PF03952 Enolase, N-terminal domain RB12406 PF03825 Nucleoside H+ symporter RB12419 PF14437 MafB19-like deaminase RB12424 PF00520 Ion transport protein RB12424 PF00027 Cyclic nucleotide-binding domain RB12431 PF16347 Domain of unknown function (DUF4976) RB12431 PF00884 Sulfatase RB12432 PF16385 Domain of unknown function RB12432 PF00884 Sulfatase RB12436 PF00950 ABC 3 transport family RB12437 PF00950 ABC 3 transport family RB12438 PF00005 ABC transporter RB12440 PF01297 Zinc-uptake complex component A periplasmic RB12441 PF00293 NUDIX domain RB12441 PF13344 Haloacid dehalogenase-like hydrolase RB12445 PF02223 Thymidylate kinase RB1248 PF00005 ABC transporter RB12480 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RB12480 PF00925 GTP cyclohydrolase II RB12486 PF03793 PASTA domain RB12486 PF00069 Protein kinase domain RB12500 PF18269 T3SS EscN ATPase C-terminal domain RB12500 PF02874 ATP synthase alpha/beta family, beta-barrel domain RB12500 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RB12502 PF14842 FliG N-terminal domain RB12502 PF14841 FliG middle domain RB12502 PF01706 FliG C-terminal domain RB12509 PF07730 Histidine kinase RB12510 PF00793 DAHP synthetase I family RB12513 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RB12513 PF00460 Flagella basal body rod protein RB12513 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RB12513 PF00460 Flagella basal body rod protein RB12513 PF07559 Flagellar basal body protein FlaE RB12513 PF07559 Flagellar basal body protein FlaE RB12532 PF00149 Calcineurin-like phosphoesterase RB12532 PF16656 Purple acid Phosphatase, N-terminal domain RB12549 PF01170 Putative RNA methylase family UPF0020 RB12549 PF02926 THUMP domain RB12559 PF01979 Amidohydrolase family RB12564 PF10518 TAT (twin-arginine translocation) pathway signal sequence RB12564 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RB12571 PF00990 Diguanylate cyclase, GGDEF domain RB12572 PF00069 Protein kinase domain RB12577 PF09285 Elongation factor P, C-terminal RB12577 PF08207 Elongation factor P (EF-P) KOW-like domain RB12577 PF01132 Elongation factor P (EF-P) OB domain RB12590 PF13439 Glycosyltransferase Family 4 RB12597 PF00180 Isocitrate/isopropylmalate dehydrogenase RB12606 PF02397 Bacterial sugar transferase RB12614 PF00303 Thymidylate synthase RB12617 PF00186 Dihydrofolate reductase RB1262 PF07733 Bacterial DNA polymerase III alpha NTPase domain RB1262 PF14579 Helix-hairpin-helix motif RB1262 PF02811 PHP domain RB1262 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RB12623 PF00416 Ribosomal protein S13/S18 RB12625 PF00411 Ribosomal protein S11 RB12626 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RB12626 PF01000 RNA polymerase Rpb3/RpoA insert domain RB12626 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RB12628 PF01196 Ribosomal protein L17 RB1263 PF01207 Dihydrouridine synthase (Dus) RB12638 PF08546 Ketopantoate reductase PanE/ApbA C terminal RB12638 PF02558 Ketopantoate reductase PanE/ApbA RB12652 PF01380 SIS domain RB12656 PF00330 Aconitase family (aconitate hydratase) RB12658 PF00694 Aconitase C-terminal domain RB12661 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RB12666 PF13247 4Fe-4S dicluster domain RB12666 PF00037 4Fe-4S binding domain RB12683 PF00115 Cytochrome C and Quinol oxidase polypeptide I RB12685 PF00510 Cytochrome c oxidase subunit III RB12690 PF02348 Cytidylyltransferase RB12694 PF03793 PASTA domain RB12694 PF00069 Protein kinase domain RB12718 PF01743 Poly A polymerase head domain RB12718 PF01966 HD domain RB12718 PF12627 Probable RNA and SrmB- binding site of polymerase A RB1272 PF00701 Dihydrodipicolinate synthetase family RB12724 PF18755 Restriction Enzyme Adenine Methylase Associated RB12724 PF01555 DNA methylase RB12730 PF04542 Sigma-70 region 2 RB12730 PF08281 Sigma-70, region 4 RB1274 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RB12740 PF08450 SMP-30/Gluconolactonase/LRE-like region RB12745 PF00586 AIR synthase related protein, N-terminal domain RB12745 PF02769 AIR synthase related protein, C-terminal domain RB12746 PF06827 Zinc finger found in FPG and IleRS RB12746 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RB12746 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RB12752 PF13180 PDZ domain RB12756 PF00682 HMGL-like RB12756 PF08502 LeuA allosteric (dimerisation) domain RB12762 PF08471 Class II vitamin B12-dependent ribonucleotide reductase RB12762 PF02867 Ribonucleotide reductase, barrel domain RB12766 PF00563 EAL domain RB12766 PF00990 Diguanylate cyclase, GGDEF domain RB12766 PF13426 PAS domain RB12768 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain RB12768 PF00437 Type II/IV secretion system protein RB12773 PF00437 Type II/IV secretion system protein RB12774 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain RB12774 PF00437 Type II/IV secretion system protein RB12781 PF00482 Type II secretion system (T2SS), protein F RB12783 PF08334 Type II secretion system (T2SS), protein G RB12783 PF07963 Prokaryotic N-terminal methylation motif RB1279 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RB12799 PF01612 3'-5' exonuclease RB12799 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RB12799 PF01367 5'-3' exonuclease, C-terminal SAM fold RB12799 PF00476 DNA polymerase family A RB128 PF00437 Type II/IV secretion system protein RB12812 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RB12812 PF00108 Thiolase, N-terminal domain RB12816 PF07722 Peptidase C26 RB12821 PF01245 Ribosomal protein L19 RB12823 PF01746 tRNA (Guanine-1)-methyltransferase RB12824 PF00886 Ribosomal protein S16 RB12825 PF02978 Signal peptide binding domain RB12825 PF02881 SRP54-type protein, helical bundle domain RB12825 PF00448 SRP54-type protein, GTPase domain RB12831 PF00535 Glycosyl transferase family 2 RB12839 PF00687 Ribosomal protein L1p/L10e family RB12840 PF00466 Ribosomal protein L10 RB12842 PF16320 Ribosomal protein L7/L12 dimerisation domain RB12842 PF00542 Ribosomal protein L7/L12 C-terminal domain RB12854 PF02911 Formyl transferase, C-terminal domain RB12854 PF00551 Formyl transferase RB12856 PF01327 Polypeptide deformylase RB12858 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RB12858 PF00005 ABC transporter RB12859 PF00005 ABC transporter RB12859 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RB1286 PF13808 DDE_Tnp_1-associated RB1286 PF01609 Transposase DDE domain RB12860 PF00528 Binding-protein-dependent transport system inner membrane component RB12860 PF12911 N-terminal TM domain of oligopeptide transport permease C RB12861 PF00528 Binding-protein-dependent transport system inner membrane component RB12862 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RB12864 PF00155 Aminotransferase class I and II RB12866 PF06167 Glucose-regulated metallo-peptidase M90 RB12881 PF00072 Response regulator receiver domain RB12885 PF00849 RNA pseudouridylate synthase RB12886 PF03741 Integral membrane protein TerC family RB12902 PF00069 Protein kinase domain RB12902 PF14032 PknH-like extracellular domain RB12904 PF17848 Acetyl-coA carboxylase zinc finger domain RB12904 PF01039 Carboxyl transferase domain RB12905 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RB12905 PF00205 Thiamine pyrophosphate enzyme, central domain RB12905 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RB12907 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RB12921 PF00456 Transketolase, thiamine diphosphate binding domain RB12921 PF02779 Transketolase, pyrimidine binding domain RB12921 PF02780 Transketolase, C-terminal domain RB12924 PF00709 Adenylosuccinate synthetase RB12928 PF00144 Beta-lactamase RB12934 PF01168 Alanine racemase, N-terminal domain RB12940 PF01527 Transposase RB12941 PF00665 Integrase core domain RB12941 PF13276 HTH-like domain RB12941 PF13333 Integrase core domain RB12945 PF00472 RF-1 domain RB12949 PF00512 His Kinase A (phospho-acceptor) domain RB12949 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB12949 PF02743 Cache domain RB12952 PF00072 Response regulator receiver domain RB12963 PF04055 Radical SAM superfamily RB130 PF07963 Prokaryotic N-terminal methylation motif RB130 PF08334 Type II secretion system (T2SS), protein G RB13025 PF01494 FAD binding domain RB13026 PF01494 FAD binding domain RB13030 PF07963 Prokaryotic N-terminal methylation motif RB13030 PF08334 Type II secretion system (T2SS), protein G RB13037 PF07726 ATPase family associated with various cellular activities (AAA) RB13037 PF17863 AAA lid domain RB13071 PF13614 AAA domain RB13073 PF00437 Type II/IV secretion system protein RB1308 PF07992 Pyridine nucleotide-disulphide oxidoreductase RB1308 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RB13091 PF07683 Cobalamin synthesis protein cobW C-terminal domain RB13091 PF02492 CobW/HypB/UreG, nucleotide-binding domain RB13094 PF07683 Cobalamin synthesis protein cobW C-terminal domain RB13094 PF02492 CobW/HypB/UreG, nucleotide-binding domain RB1310 PF00005 ABC transporter RB13104 PF04972 BON domain RB13104 PF00263 Bacterial type II and III secretion system protein RB13104 PF13629 Pilus formation protein N terminal region RB13110 PF00149 Calcineurin-like phosphoesterase RB13112 PF00512 His Kinase A (phospho-acceptor) domain RB13112 PF00072 Response regulator receiver domain RB13112 PF09308 LuxQ, periplasmic RB13112 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB13118 PF00072 Response regulator receiver domain RB13118 PF03861 ANTAR domain RB13140 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RB13140 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RB13147 PF16385 Domain of unknown function RB13147 PF00884 Sulfatase RB13148 PF16385 Domain of unknown function RB13148 PF00884 Sulfatase RB13154 PF00135 Carboxylesterase family RB13155 PF16385 Domain of unknown function RB13155 PF00884 Sulfatase RB13157 PF00884 Sulfatase RB13157 PF16347 Domain of unknown function (DUF4976) RB13165 PF12833 Helix-turn-helix domain RB1317 PF08502 LeuA allosteric (dimerisation) domain RB1317 PF00682 HMGL-like RB13175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB13175 PF09308 LuxQ, periplasmic RB13175 PF00072 Response regulator receiver domain RB13175 PF00512 His Kinase A (phospho-acceptor) domain RB13180 PF06745 KaiC RB13181 PF00072 Response regulator receiver domain RB13181 PF00989 PAS fold RB13181 PF01627 Hpt domain RB13181 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB13181 PF18415 Histidine kinase receptor ArcB trans-membrane domain RB13181 PF00512 His Kinase A (phospho-acceptor) domain RB1319 PF10458 Valyl tRNA synthetase tRNA binding arm RB1319 PF08264 Anticodon-binding domain of tRNA RB1319 PF00133 tRNA synthetases class I (I, L, M and V) RB13193 PF01434 Peptidase family M41 RB13193 PF00004 ATPase family associated with various cellular activities (AAA) RB13193 PF17862 AAA+ lid domain RB13193 PF06480 FtsH Extracellular RB13209 PF00892 EamA-like transporter family RB1321 PF00480 ROK family RB13211 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase RB13217 PF03965 Penicillinase repressor RB13224 PF11066 Protein of unknown function (DUF2867) RB13224 PF13460 NAD(P)H-binding RB13225 PF00271 Helicase conserved C-terminal domain RB13225 PF00270 DEAD/DEAH box helicase RB1325 PF00005 ABC transporter RB13257 PF12697 Alpha/beta hydrolase family RB13260 PF08240 Alcohol dehydrogenase GroES-like domain RB13260 PF00107 Zinc-binding dehydrogenase RB13261 PF00749 tRNA synthetases class I (E and Q), catalytic domain RB13263 PF01336 OB-fold nucleic acid binding domain RB13263 PF00152 tRNA synthetases class II (D, K and N) RB13264 PF00501 AMP-binding enzyme RB13264 PF16177 Acetyl-coenzyme A synthetase N-terminus RB13264 PF13193 AMP-binding enzyme C-terminal domain RB13265 PF03793 PASTA domain RB13265 PF00069 Protein kinase domain RB13271 PF07478 D-ala D-ala ligase C-terminus RB13291 PF07660 Secretin and TonB N terminus short domain RB13291 PF03958 Bacterial type II/III secretion system short domain RB13291 PF00263 Bacterial type II and III secretion system protein RB13291 PF11741 AMIN domain RB133 PF04228 Putative neutral zinc metallopeptidase RB13301 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RB13301 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RB13303 PF00733 Asparagine synthase RB13303 PF13537 Glutamine amidotransferase domain RB13304 PF01546 Peptidase family M20/M25/M40 RB13304 PF07687 Peptidase dimerisation domain RB13306 PF00857 Isochorismatase family RB1342 PF00813 FliP family RB1344 PF01313 Bacterial export proteins, family 3 RB1347 PF01312 FlhB HrpN YscU SpaS Family RB1353 PF01566 Natural resistance-associated macrophage protein RB1355 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase RB1356 PF01979 Amidohydrolase family RB1357 PF00990 Diguanylate cyclase, GGDEF domain RB1358 PF00483 Nucleotidyl transferase RB1359 PF17820 PDZ domain RB1359 PF13180 PDZ domain RB136 PF01571 Aminomethyltransferase folate-binding domain RB1363 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RB1363 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RB1367 PF03808 Glycosyl transferase WecB/TagA/CpsF family RB1371 PF01343 Peptidase family S49 RB1391 PF01370 NAD dependent epimerase/dehydratase family RB1391 PF08338 Domain of unknown function (DUF1731) RB1392 PF00140 Sigma-70 factor, region 1.2 RB1392 PF04545 Sigma-70, region 4 RB1392 PF04542 Sigma-70 region 2 RB1392 PF04539 Sigma-70 region 3 RB140 PF00069 Protein kinase domain RB140 PF01436 NHL repeat RB140 PF08450 SMP-30/Gluconolactonase/LRE-like region RB1405 PF03958 Bacterial type II/III secretion system short domain RB1405 PF00263 Bacterial type II and III secretion system protein RB1411 PF00701 Dihydrodipicolinate synthetase family RB1412 PF00459 Inositol monophosphatase family RB1427 PF00361 Proton-conducting membrane transporter RB1430 PF00361 Proton-conducting membrane transporter RB1431 PF00361 Proton-conducting membrane transporter RB1436 PF03334 Na+/H+ antiporter subunit RB1439 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) RB1451 PF13360 PQQ-like domain RB1454 PF12833 Helix-turn-helix domain RB1456 PF16385 Domain of unknown function RB1456 PF00884 Sulfatase RB146 PF00529 HlyD membrane-fusion protein of T1SS RB146 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RB1464 PF00884 Sulfatase RB1464 PF16347 Domain of unknown function (DUF4976) RB1475 PF00884 Sulfatase RB1477 PF00884 Sulfatase RB1477 PF16385 Domain of unknown function RB148 PF02810 SEC-C motif RB148 PF07516 SecA Wing and Scaffold domain RB148 PF07517 SecA DEAD-like domain RB148 PF01043 SecA preprotein cross-linking domain RB1480 PF00920 Dehydratase family RB1481 PF03475 3-alpha domain RB1481 PF03473 MOSC domain RB1483 PF00512 His Kinase A (phospho-acceptor) domain RB1483 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB1483 PF00360 Phytochrome region RB1483 PF08446 PAS fold RB1483 PF01590 GAF domain RB1485 PF02811 PHP domain RB1485 PF14716 Helix-hairpin-helix domain RB1485 PF14791 DNA polymerase beta thumb RB1488 PF07992 Pyridine nucleotide-disulphide oxidoreductase RB1499 PF07726 ATPase family associated with various cellular activities (AAA) RB1499 PF17863 AAA lid domain RB1502 PF00072 Response regulator receiver domain RB1517 PF00005 ABC transporter RB1522 PF07963 Prokaryotic N-terminal methylation motif RB1522 PF08334 Type II secretion system (T2SS), protein G RB1529 PF02310 B12 binding domain RB1529 PF04055 Radical SAM superfamily RB1529 PF13282 Domain of unknown function (DUF4070) RB1532 PF00069 Protein kinase domain RB1545 PF03958 Bacterial type II/III secretion system short domain RB1545 PF00263 Bacterial type II and III secretion system protein RB1555 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RB1555 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RB1561 PF00834 Ribulose-phosphate 3 epimerase family RB1571 PF04675 DNA ligase N terminus RB1571 PF04679 ATP dependent DNA ligase C terminal region RB1571 PF01068 ATP dependent DNA ligase domain RB1577 PF00270 DEAD/DEAH box helicase RB1577 PF00271 Helicase conserved C-terminal domain RB1577 PF08494 DEAD/H associated RB1578 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain RB1578 PF00749 tRNA synthetases class I (E and Q), catalytic domain RB1579 PF02074 Carboxypeptidase Taq (M32) metallopeptidase RB1584 PF00815 Histidinol dehydrogenase RB1586 PF00109 Beta-ketoacyl synthase, N-terminal domain RB1586 PF02801 Beta-ketoacyl synthase, C-terminal domain RB1588 PF00550 Phosphopantetheine attachment site RB159 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) RB159 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB159 PF00672 HAMP domain RB159 PF01627 Hpt domain RB159 PF00512 His Kinase A (phospho-acceptor) domain RB159 PF00072 Response regulator receiver domain RB1591 PF01593 Flavin containing amine oxidoreductase RB1593 PF03971 Monomeric isocitrate dehydrogenase RB1595 PF00891 O-methyltransferase domain RB1597 PF08719 Domain of unknown function (DUF1768) RB1604 PF08713 DNA alkylation repair enzyme RB1606 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RB1606 PF02805 Metal binding domain of Ada RB1606 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RB1606 PF12833 Helix-turn-helix domain RB1608 PF00144 Beta-lactamase RB161 PF00072 Response regulator receiver domain RB1610 PF00884 Sulfatase RB1629 PF00480 ROK family RB1630 PF00679 Elongation factor G C-terminus RB1630 PF06421 GTP-binding protein LepA C-terminus RB1630 PF00009 Elongation factor Tu GTP binding domain RB1630 PF03144 Elongation factor Tu domain 2 RB1637 PF00535 Glycosyl transferase family 2 RB1641 PF01699 Sodium/calcium exchanger protein RB165 PF13276 HTH-like domain RB165 PF00665 Integrase core domain RB165 PF13333 Integrase core domain RB1656 PF17151 Periplasmic sensor domain RB1656 PF00990 Diguanylate cyclase, GGDEF domain RB1688 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RB1696 PF00977 Histidine biosynthesis protein RB170 PF01527 Transposase RB1703 PF02545 Maf-like protein RB1706 PF11638 DnaA N-terminal domain RB1706 PF08299 Bacterial dnaA protein helix-turn-helix RB1706 PF00308 Bacterial dnaA protein RB1708 PF00772 DnaB-like helicase N terminal domain RB1708 PF03796 DnaB-like helicase C terminal domain RB171 PF13333 Integrase core domain RB171 PF00665 Integrase core domain RB171 PF13276 HTH-like domain RB1711 PF00072 Response regulator receiver domain RB1711 PF00158 Sigma-54 interaction domain RB1728 PF06724 Domain of Unknown Function (DUF1206) RB1731 PF10077 Uncharacterized protein conserved in bacteria (DUF2314) RB1732 PF00795 Carbon-nitrogen hydrolase RB1736 PF16385 Domain of unknown function RB1736 PF00884 Sulfatase RB1739 PF01841 Transglutaminase-like superfamily RB1784 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RB1784 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RB1784 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RB1798 PF07726 ATPase family associated with various cellular activities (AAA) RB1798 PF17863 AAA lid domain RB1819 PF16363 GDP-mannose 4,6 dehydratase RB1821 PF03793 PASTA domain RB1821 PF00069 Protein kinase domain RB1831 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) RB1831 PF11973 NQRA C-terminal domain RB1832 PF03116 NQR2, RnfD, RnfE family RB1833 PF04205 FMN-binding domain RB1835 PF02508 Rnf-Nqr subunit, membrane protein RB1836 PF02508 Rnf-Nqr subunit, membrane protein RB1837 PF00175 Oxidoreductase NAD-binding domain RB1837 PF00111 2Fe-2S iron-sulfur cluster binding domain RB1837 PF00970 Oxidoreductase FAD-binding domain RB1839 PF02424 ApbE family RB1840 PF01648 4'-phosphopantetheinyl transferase superfamily RB1856 PF00490 Delta-aminolevulinic acid dehydratase RB1862 PF00392 Bacterial regulatory proteins, gntR family RB1866 PF00005 ABC transporter RB188 PF00529 HlyD membrane-fusion protein of T1SS RB188 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RB1887 PF00171 Aldehyde dehydrogenase family RB1889 PF14032 PknH-like extracellular domain RB1889 PF00069 Protein kinase domain RB1892 PF00069 Protein kinase domain RB1892 PF03793 PASTA domain RB1893 PF03793 PASTA domain RB1893 PF00069 Protein kinase domain RB1895 PF13195 Protein of unknown function (DUF4011) RB1895 PF13086 AAA domain RB1895 PF13087 AAA domain RB1898 PF01761 3-dehydroquinate synthase RB1900 PF02357 Transcription termination factor nusG RB1900 PF00467 KOW motif RB1902 PF18267 Rubredoxin NAD+ reductase C-terminal domain RB1902 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RB1902 PF07992 Pyridine nucleotide-disulphide oxidoreductase RB1902 PF04324 BFD-like [2Fe-2S] binding domain RB1902 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RB1909 PF00970 Oxidoreductase FAD-binding domain RB1909 PF00042 Globin RB1909 PF00175 Oxidoreductase NAD-binding domain RB191 PF00873 AcrB/AcrD/AcrF family RB1934 PF00149 Calcineurin-like phosphoesterase RB1934 PF02872 5'-nucleotidase, C-terminal domain RB1939 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RB1939 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RB1958 PF03136 Pup-ligase protein RB1964 PF01000 RNA polymerase Rpb3/RpoA insert domain RB1964 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RB1964 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RB1970 PF01702 Queuine tRNA-ribosyltransferase RB1977 PF04675 DNA ligase N terminus RB1977 PF01068 ATP dependent DNA ligase domain RB1977 PF04679 ATP dependent DNA ligase C terminal region RB198 PF00884 Sulfatase RB1993 PF13735 tRNA nucleotidyltransferase domain 2 putative RB1993 PF01743 Poly A polymerase head domain RB1993 PF12627 Probable RNA and SrmB- binding site of polymerase A RB1998 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RB1998 PF02896 PEP-utilising enzyme, TIM barrel domain RB1998 PF00391 PEP-utilising enzyme, mobile domain RB200 PF00884 Sulfatase RB200 PF16347 Domain of unknown function (DUF4976) RB2008 PF00512 His Kinase A (phospho-acceptor) domain RB2008 PF08446 PAS fold RB2008 PF00360 Phytochrome region RB2008 PF01590 GAF domain RB2008 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB201 PF01261 Xylose isomerase-like TIM barrel RB2013 PF07517 SecA DEAD-like domain RB2013 PF01043 SecA preprotein cross-linking domain RB2022 PF13277 YmdB-like protein RB2024 PF00575 S1 RNA binding domain RB203 PF00248 Aldo/keto reductase family RB2062 PF13180 PDZ domain RB2062 PF17820 PDZ domain RB2066 PF17820 PDZ domain RB2066 PF13180 PDZ domain RB2078 PF05544 Proline racemase RB2081 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region RB2081 PF00326 Prolyl oligopeptidase family RB2085 PF00884 Sulfatase RB2098 PF07969 Amidohydrolase family RB2103 PF00501 AMP-binding enzyme RB2110 PF01554 MatE RB2114 PF00694 Aconitase C-terminal domain RB2114 PF00330 Aconitase family (aconitate hydratase) RB2118 PF04551 GcpE protein RB2121 PF03976 Polyphosphate kinase 2 (PPK2) RB2135 PF00884 Sulfatase RB2141 PF00849 RNA pseudouridylate synthase RB2142 PF01513 ATP-NAD kinase RB2143 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RB2143 PF02780 Transketolase, C-terminal domain RB2143 PF02779 Transketolase, pyrimidine binding domain RB2144 PF00348 Polyprenyl synthetase RB2146 PF02609 Exonuclease VII small subunit RB2152 PF09297 NADH pyrophosphatase zinc ribbon domain RB2152 PF00293 NUDIX domain RB2152 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain RB2160 PF09095 Domain of unknown function (DUF1926) RB2160 PF09094 Domain of unknown function (DUF1925) RB2160 PF03065 Glycosyl hydrolase family 57 RB2162 PF00069 Protein kinase domain RB2162 PF03793 PASTA domain RB2174 PF00486 Transcriptional regulatory protein, C terminal RB2174 PF00072 Response regulator receiver domain RB2200 PF05552 Conserved TM helix RB2200 PF00924 Mechanosensitive ion channel RB2204 PF13614 AAA domain RB223 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase RB2238 PF00042 Globin RB2238 PF00970 Oxidoreductase FAD-binding domain RB2238 PF00175 Oxidoreductase NAD-binding domain RB2239 PF00106 short chain dehydrogenase RB2244 PF00255 Glutathione peroxidase RB2253 PF06971 Putative DNA-binding protein N-terminus RB2253 PF02629 CoA binding domain RB2254 PF00884 Sulfatase RB2264 PF01741 Large-conductance mechanosensitive channel, MscL RB2268 PF01641 SelR domain RB2278 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RB2291 PF13614 AAA domain RB2296 PF17762 HTH domain found in ParB protein RB2296 PF02195 ParB-like nuclease domain RB2299 PF00069 Protein kinase domain RB2303 PF08281 Sigma-70, region 4 RB2303 PF04542 Sigma-70 region 2 RB2355 PF13302 Acetyltransferase (GNAT) domain RB2367 PF16347 Domain of unknown function (DUF4976) RB2367 PF00884 Sulfatase RB2373 PF00107 Zinc-binding dehydrogenase RB2373 PF08240 Alcohol dehydrogenase GroES-like domain RB2377 PF00884 Sulfatase RB2381 PF02321 Outer membrane efflux protein RB2383 PF00873 AcrB/AcrD/AcrF family RB2386 PF00529 HlyD membrane-fusion protein of T1SS RB2386 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RB2396 PF00158 Sigma-54 interaction domain RB2396 PF00072 Response regulator receiver domain RB2396 PF02954 Bacterial regulatory protein, Fis family RB2403 PF01232 Mannitol dehydrogenase Rossmann domain RB2403 PF08125 Mannitol dehydrogenase C-terminal domain RB2420 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RB2429 PF00012 Hsp70 protein RB2440 PF07995 Glucose / Sorbosone dehydrogenase RB2464 PF13807 G-rich domain on putative tyrosine kinase RB2464 PF02706 Chain length determinant protein RB2464 PF13614 AAA domain RB2470 PF00132 Bacterial transferase hexapeptide (six repeats) RB2474 PF13439 Glycosyltransferase Family 4 RB2475 PF13808 DDE_Tnp_1-associated RB2475 PF01609 Transposase DDE domain RB2479 PF05050 Methyltransferase FkbM domain RB2484 PF13439 Glycosyltransferase Family 4 RB2484 PF00534 Glycosyl transferases group 1 RB2500 PF01370 NAD dependent epimerase/dehydratase family RB2507 PF16363 GDP-mannose 4,6 dehydratase RB251 PF03129 Anticodon binding domain RB251 PF13393 Histidyl-tRNA synthetase RB2512 PF16363 GDP-mannose 4,6 dehydratase RB2515 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RB2515 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RB2515 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RB2518 PF16363 GDP-mannose 4,6 dehydratase RB2521 PF01370 NAD dependent epimerase/dehydratase family RB2530 PF01966 HD domain RB2532 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase RB2535 PF00356 Bacterial regulatory proteins, lacI family RB2543 PF00575 S1 RNA binding domain RB2549 PF00512 His Kinase A (phospho-acceptor) domain RB2549 PF08446 PAS fold RB2549 PF01590 GAF domain RB2549 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB2549 PF00360 Phytochrome region RB2550 PF01339 CheB methylesterase RB2550 PF00072 Response regulator receiver domain RB2552 PF02774 Semialdehyde dehydrogenase, dimerisation domain RB2552 PF01118 Semialdehyde dehydrogenase, NAD binding domain RB2558 PF02899 Phage integrase, N-terminal SAM-like domain RB2558 PF00589 Phage integrase family RB256 PF01842 ACT domain RB256 PF00551 Formyl transferase RB2566 PF00056 lactate/malate dehydrogenase, NAD binding domain RB2566 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RB2568 PF00596 Class II Aldolase and Adducin N-terminal domain RB2579 PF00171 Aldehyde dehydrogenase family RB2581 PF03319 Ethanolamine utilisation protein EutN/carboxysome RB2582 PF00871 Acetokinase family RB2585 PF00936 BMC domain RB2586 PF00936 BMC domain RB2588 PF06130 Phosphate propanoyltransferase RB2590 PF08220 DeoR-like helix-turn-helix domain RB2590 PF00455 DeoR C terminal sensor domain RB2613 PF00884 Sulfatase RB2619 PF01026 TatD related DNase RB2621 PF00072 Response regulator receiver domain RB2621 PF00486 Transcriptional regulatory protein, C terminal RB2627 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RB2627 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RB2630 PF01926 50S ribosome-binding GTPase RB2630 PF01018 GTP1/OBG RB2632 PF03309 Type III pantothenate kinase RB2637 PF00075 RNase H RB2638 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RB2638 PF00128 Alpha amylase, catalytic domain RB2638 PF02806 Alpha amylase, C-terminal all-beta domain RB264 PF01165 Ribosomal protein S21 RB2642 PF14489 QueF-like protein RB2645 PF04055 Radical SAM superfamily RB2651 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RB2658 PF01261 Xylose isomerase-like TIM barrel RB2661 PF01565 FAD binding domain RB2661 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RB2663 PF16347 Domain of unknown function (DUF4976) RB2663 PF00884 Sulfatase RB2673 PF00069 Protein kinase domain RB2673 PF03793 PASTA domain RB2676 PF01416 tRNA pseudouridine synthase RB2701 PF00884 Sulfatase RB2702 PF00722 Glycosyl hydrolases family 16 RB2702 PF02368 Bacterial Ig-like domain (group 2) RB2707 PF00884 Sulfatase RB2710 PF01694 Rhomboid family RB2718 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RB2718 PF07992 Pyridine nucleotide-disulphide oxidoreductase RB2725 PF02684 Lipid-A-disaccharide synthetase RB2728 PF08448 PAS fold RB2728 PF08447 PAS fold RB2728 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB2731 PF02954 Bacterial regulatory protein, Fis family RB2731 PF00072 Response regulator receiver domain RB2731 PF00158 Sigma-54 interaction domain RB2732 PF00884 Sulfatase RB2735 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain RB2735 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain RB2743 PF00072 Response regulator receiver domain RB2743 PF00196 Bacterial regulatory proteins, luxR family RB2746 PF00701 Dihydrodipicolinate synthetase family RB2748 PF04055 Radical SAM superfamily RB2750 PF02441 Flavoprotein RB2752 PF01209 ubiE/COQ5 methyltransferase family RB2754 PF13419 Haloacid dehalogenase-like hydrolase RB2774 PF03884 DNA gyrase inhibitor YacG RB2780 PF03449 Transcription elongation factor, N-terminal RB2780 PF01272 Transcription elongation factor, GreA/GreB, C-term RB2788 PF00375 Sodium:dicarboxylate symporter family RB279 PF00005 ABC transporter RB281 PF00166 Chaperonin 10 Kd subunit RB2817 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RB2817 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain RB2825 PF03009 Glycerophosphoryl diester phosphodiesterase family RB2839 PF17783 CvfB-like winged helix domain RB2839 PF13509 S1 domain RB284 PF01966 HD domain RB284 PF13286 Phosphohydrolase-associated domain RB2840 PF08281 Sigma-70, region 4 RB2840 PF04542 Sigma-70 region 2 RB2855 PF00069 Protein kinase domain RB2855 PF03793 PASTA domain RB2872 PF00360 Phytochrome region RB2872 PF01590 GAF domain RB2872 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB2872 PF00512 His Kinase A (phospho-acceptor) domain RB2872 PF08446 PAS fold RB2881 PF02535 ZIP Zinc transporter RB2884 PF16363 GDP-mannose 4,6 dehydratase RB289 PF00535 Glycosyl transferase family 2 RB289 PF00795 Carbon-nitrogen hydrolase RB2895 PF02472 Biopolymer transport protein ExbD/TolR RB2905 PF04468 PSP1 C-terminal conserved region RB291 PF14759 Reductase C-terminal RB291 PF07992 Pyridine nucleotide-disulphide oxidoreductase RB293 PF12804 MobA-like NTP transferase domain RB2934 PF00550 Phosphopantetheine attachment site RB295 PF03454 MoeA C-terminal region (domain IV) RB295 PF03453 MoeA N-terminal region (domain I and II) RB295 PF00994 Probable molybdopterin binding domain RB2966 PF00004 ATPase family associated with various cellular activities (AAA) RB2966 PF17862 AAA+ lid domain RB2966 PF01434 Peptidase family M41 RB2968 PF03193 RsgA GTPase RB297 PF00909 Ammonium Transporter Family RB2970 PF08241 Methyltransferase domain RB2971 PF01261 Xylose isomerase-like TIM barrel RB2974 PF08335 GlnD PII-uridylyltransferase RB2974 PF01842 ACT domain RB2974 PF01966 HD domain RB2975 PF00543 Nitrogen regulatory protein P-II RB2976 PF01923 Cobalamin adenosyltransferase RB2978 PF00293 NUDIX domain RB2982 PF00654 Voltage gated chloride channel RB2983 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RB2983 PF03466 LysR substrate binding domain RB2985 PF00534 Glycosyl transferases group 1 RB2985 PF00862 Sucrose synthase RB2986 PF00128 Alpha amylase, catalytic domain RB2992 PF02896 PEP-utilising enzyme, TIM barrel domain RB2992 PF00391 PEP-utilising enzyme, mobile domain RB2992 PF05524 PEP-utilising enzyme, N-terminal RB3003 PF13360 PQQ-like domain RB301 PF10576 Iron-sulfur binding domain of endonuclease III RB301 PF00633 Helix-hairpin-helix motif RB301 PF14815 NUDIX domain RB301 PF00730 HhH-GPD superfamily base excision DNA repair protein RB3010 PF00141 Peroxidase RB3016 PF01906 Putative heavy-metal-binding RB3023 PF17820 PDZ domain RB3023 PF02163 Peptidase family M50 RB304 PF00034 Cytochrome c RB304 PF03150 Di-haem cytochrome c peroxidase RB3065 PF08241 Methyltransferase domain RB307 PF00390 Malic enzyme, N-terminal domain RB307 PF03949 Malic enzyme, NAD binding domain RB3070 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RB3070 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RB3103 PF14579 Helix-hairpin-helix motif RB3103 PF02811 PHP domain RB3103 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RB3103 PF07733 Bacterial DNA polymerase III alpha NTPase domain RB3109 PF03150 Di-haem cytochrome c peroxidase RB3109 PF00034 Cytochrome c RB314 PF00698 Acyl transferase domain RB3144 PF00589 Phage integrase family RB3144 PF02899 Phage integrase, N-terminal SAM-like domain RB3157 PF13495 Phage integrase, N-terminal SAM-like domain RB3157 PF00589 Phage integrase family RB3174 PF00849 RNA pseudouridylate synthase RB3174 PF01479 S4 domain RB3176 PF00155 Aminotransferase class I and II RB3177 PF00884 Sulfatase RB318 PF00550 Phosphopantetheine attachment site RB3193 PF00923 Transaldolase/Fructose-6-phosphate aldolase RB3195 PF00595 PDZ domain RB3195 PF03572 Peptidase family S41 RB320 PF00109 Beta-ketoacyl synthase, N-terminal domain RB320 PF02801 Beta-ketoacyl synthase, C-terminal domain RB321 PF00196 Bacterial regulatory proteins, luxR family RB321 PF00072 Response regulator receiver domain RB3217 PF02675 S-adenosylmethionine decarboxylase RB3221 PF13421 SPFH domain-Band 7 family RB3236 PF00939 Sodium:sulfate symporter transmembrane region RB3239 PF01261 Xylose isomerase-like TIM barrel RB3240 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase RB3240 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RB3251 PF00990 Diguanylate cyclase, GGDEF domain RB3251 PF03707 Bacterial signalling protein N terminal repeat RB3251 PF00563 EAL domain RB3253 PF00005 ABC transporter RB3253 PF13732 Domain of unknown function (DUF4162) RB3255 PF01960 ArgJ family RB3266 PF00849 RNA pseudouridylate synthase RB3271 PF00069 Protein kinase domain RB3272 PF00204 DNA gyrase B RB3272 PF01751 Toprim domain RB3272 PF00986 DNA gyrase B subunit, carboxyl terminus RB3272 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB328 PF00156 Phosphoribosyl transferase domain RB3281 PF00216 Bacterial DNA-binding protein RB3283 PF03692 Putative zinc- or iron-chelating domain RB3287 PF00005 ABC transporter RB3287 PF08402 TOBE domain RB3292 PF00202 Aminotransferase class-III RB3309 PF00884 Sulfatase RB3309 PF16385 Domain of unknown function RB3312 PF08546 Ketopantoate reductase PanE/ApbA C terminal RB3312 PF02558 Ketopantoate reductase PanE/ApbA RB3313 PF09371 Tex-like protein N-terminal domain RB3313 PF16921 Tex protein YqgF-like domain RB3313 PF17674 HHH domain RB3313 PF00575 S1 RNA binding domain RB3314 PF17862 AAA+ lid domain RB3314 PF01434 Peptidase family M41 RB3314 PF00004 ATPase family associated with various cellular activities (AAA) RB3317 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RB3317 PF10518 TAT (twin-arginine translocation) pathway signal sequence RB3330 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RB3338 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RB334 PF04945 YHS domain RB3340 PF02585 GlcNAc-PI de-N-acetylase RB3340 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase RB3345 PF12833 Helix-turn-helix domain RB3345 PF02311 AraC-like ligand binding domain RB3349 PF00474 Sodium:solute symporter family RB3352 PF00701 Dihydrodipicolinate synthetase family RB3353 PF13088 BNR repeat-like domain RB3353 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase RB3353 PF00754 F5/8 type C domain RB3363 PF00196 Bacterial regulatory proteins, luxR family RB3363 PF00072 Response regulator receiver domain RB3371 PF04072 Leucine carboxyl methyltransferase RB3373 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) RB3373 PF00672 HAMP domain RB3373 PF01627 Hpt domain RB3373 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB3373 PF00072 Response regulator receiver domain RB3373 PF00512 His Kinase A (phospho-acceptor) domain RB339 PF01910 Thiamine-binding protein RB3403 PF00884 Sulfatase RB3405 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RB3405 PF16355 Domain of unknown function (DUF4982) RB3405 PF02837 Glycosyl hydrolases family 2, sugar binding domain RB3405 PF00703 Glycosyl hydrolases family 2 RB3413 PF07859 alpha/beta hydrolase fold RB342 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase RB342 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RB3423 PF00364 Biotin-requiring enzyme RB3423 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RB3423 PF02817 e3 binding domain RB3424 PF17831 Pyruvate dehydrogenase E1 component middle domain RB3424 PF00456 Transketolase, thiamine diphosphate binding domain RB3431 PF00004 ATPase family associated with various cellular activities (AAA) RB3431 PF05362 Lon protease (S16) C-terminal proteolytic domain RB3431 PF02190 ATP-dependent protease La (LON) substrate-binding domain RB3442 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RB3442 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RB3446 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RB3451 PF02542 YgbB family RB3453 PF07195 Flagellar hook-associated protein 2 C-terminus RB3453 PF02465 Flagellar hook-associated protein 2 N-terminus RB3453 PF07196 Flagellin hook IN motif RB3465 PF00521 DNA gyrase/topoisomerase IV, subunit A RB3465 PF03989 DNA gyrase C-terminal domain, beta-propeller RB3466 PF00204 DNA gyrase B RB3466 PF00986 DNA gyrase B subunit, carboxyl terminus RB3466 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB3466 PF01751 Toprim domain RB3471 PF01202 Shikimate kinase RB3478 PF00557 Metallopeptidase family M24 RB348 PF00884 Sulfatase RB3482 PF00437 Type II/IV secretion system protein RB3482 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain RB3484 PF00482 Type II secretion system (T2SS), protein F RB3488 PF08240 Alcohol dehydrogenase GroES-like domain RB3488 PF00107 Zinc-binding dehydrogenase RB3491 PF05025 RbsD / FucU transport protein family RB3493 PF13407 Periplasmic binding protein domain RB3496 PF00005 ABC transporter RB3497 PF02653 Branched-chain amino acid transport system / permease component RB3499 PF00294 pfkB family carbohydrate kinase RB3508 PF01370 NAD dependent epimerase/dehydratase family RB352 PF00884 Sulfatase RB352 PF16347 Domain of unknown function (DUF4976) RB3549 PF12833 Helix-turn-helix domain RB3549 PF06719 AraC-type transcriptional regulator N-terminus RB3550 PF07859 alpha/beta hydrolase fold RB3550 PF13472 GDSL-like Lipase/Acylhydrolase family RB3555 PF00480 ROK family RB3556 PF02585 GlcNAc-PI de-N-acetylase RB3556 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase RB3591 PF13439 Glycosyltransferase Family 4 RB3596 PF01592 NifU-like N terminal domain RB3597 PF00266 Aminotransferase class-V RB3598 PF13742 OB-fold nucleic acid binding domain RB3598 PF02601 Exonuclease VII, large subunit RB3605 PF00563 EAL domain RB3605 PF00990 Diguanylate cyclase, GGDEF domain RB3605 PF03707 Bacterial signalling protein N terminal repeat RB3605 PF13188 PAS domain RB3606 PF13426 PAS domain RB3606 PF08447 PAS fold RB3606 PF07536 HWE histidine kinase RB3614 PF00158 Sigma-54 interaction domain RB3614 PF00072 Response regulator receiver domain RB3614 PF02954 Bacterial regulatory protein, Fis family RB3615 PF00512 His Kinase A (phospho-acceptor) domain RB3615 PF08447 PAS fold RB3615 PF00989 PAS fold RB3615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB3622 PF06965 Na+/H+ antiporter 1 RB3632 PF00106 short chain dehydrogenase RB3639 PF13472 GDSL-like Lipase/Acylhydrolase family RB3653 PF12833 Helix-turn-helix domain RB3657 PF00106 short chain dehydrogenase RB3670 PF00665 Integrase core domain RB3678 PF02424 ApbE family RB3680 PF02082 Transcriptional regulator RB3681 PF13649 Methyltransferase domain RB3686 PF00107 Zinc-binding dehydrogenase RB3686 PF08240 Alcohol dehydrogenase GroES-like domain RB3689 PF00857 Isochorismatase family RB3692 PF12833 Helix-turn-helix domain RB3694 PF00561 alpha/beta hydrolase fold RB3698 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RB370 PF00005 ABC transporter RB3702 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RB3702 PF03466 LysR substrate binding domain RB3706 PF02424 ApbE family RB3708 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RB3708 PF17810 Arginine decarboxylase helical bundle domain RB3708 PF17944 Arginine decarboxylase C-terminal helical extension RB3710 PF00583 Acetyltransferase (GNAT) family RB3710 PF00795 Carbon-nitrogen hydrolase RB372 PF00528 Binding-protein-dependent transport system inner membrane component RB3727 PF04545 Sigma-70, region 4 RB3727 PF04542 Sigma-70 region 2 RB3727 PF04539 Sigma-70 region 3 RB3727 PF03979 Sigma-70 factor, region 1.1 RB3727 PF00140 Sigma-70 factor, region 1.2 RB3729 PF00005 ABC transporter RB3729 PF02687 FtsX-like permease family RB3729 PF12704 MacB-like periplasmic core domain RB373 PF00005 ABC transporter RB3733 PF16363 GDP-mannose 4,6 dehydratase RB3735 PF02569 Pantoate-beta-alanine ligase RB374 PF00005 ABC transporter RB3742 PF00669 Bacterial flagellin N-terminal helical region RB3742 PF07196 Flagellin hook IN motif RB3742 PF00700 Bacterial flagellin C-terminal helical region RB3751 PF01370 NAD dependent epimerase/dehydratase family RB3755 PF00884 Sulfatase RB3755 PF16347 Domain of unknown function (DUF4976) RB3762 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RB3762 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RB3763 PF16901 C-terminal domain of alpha-glycerophosphate oxidase RB3763 PF01266 FAD dependent oxidoreductase RB3767 PF00180 Isocitrate/isopropylmalate dehydrogenase RB3768 PF07690 Major Facilitator Superfamily RB377 PF12800 4Fe-4S binding domain RB377 PF09163 Formate dehydrogenase N, transmembrane RB377 PF13247 4Fe-4S dicluster domain RB3770 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RB3770 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RB3779 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB3779 PF08448 PAS fold RB3779 PF00072 Response regulator receiver domain RB3779 PF00512 His Kinase A (phospho-acceptor) domain RB3779 PF13188 PAS domain RB378 PF01568 Molydopterin dinucleotide binding domain RB378 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RB378 PF00384 Molybdopterin oxidoreductase RB3784 PF00072 Response regulator receiver domain RB3784 PF02954 Bacterial regulatory protein, Fis family RB3784 PF00158 Sigma-54 interaction domain RB3788 PF00005 ABC transporter RB379 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RB379 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RB3792 PF00512 His Kinase A (phospho-acceptor) domain RB3792 PF00989 PAS fold RB3792 PF16736 Single Cache-like RB3792 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB3794 PF01580 FtsK/SpoIIIE family RB380 PF00258 Flavodoxin RB380 PF00175 Oxidoreductase NAD-binding domain RB380 PF00667 FAD binding domain RB3816 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RB3816 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RB3817 PF03062 MBOAT, membrane-bound O-acyltransferase family RB3820 PF01066 CDP-alcohol phosphatidyltransferase RB3822 PF02666 Phosphatidylserine decarboxylase RB3824 PF02910 Fumarate reductase flavoprotein C-term RB3824 PF00890 FAD binding domain RB384 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family RB3849 PF00884 Sulfatase RB386 PF00501 AMP-binding enzyme RB3876 PF00884 Sulfatase RB3876 PF16385 Domain of unknown function RB3877 PF00884 Sulfatase RB3884 PF00696 Amino acid kinase family RB3886 PF01765 Ribosome recycling factor RB3891 PF03807 NADP oxidoreductase coenzyme F420-dependent RB3891 PF14748 Pyrroline-5-carboxylate reductase dimerisation RB3893 PF00069 Protein kinase domain RB3893 PF03793 PASTA domain RB3898 PF01470 Pyroglutamyl peptidase RB390 PF04820 Tryptophan halogenase RB3908 PF01894 Uncharacterised protein family UPF0047 RB3913 PF12392 Collagenase RB3913 PF01136 Peptidase family U32 RB3915 PF03167 Uracil DNA glycosylase superfamily RB392 PF13419 Haloacid dehalogenase-like hydrolase RB3932 PF01618 MotA/TolQ/ExbB proton channel family RB3936 PF00117 Glutamine amidotransferase class-I RB3942 PF00588 SpoU rRNA Methylase family RB3956 PF00884 Sulfatase RB3959 PF03061 Thioesterase superfamily RB3960 PF03600 Citrate transporter RB3960 PF02080 TrkA-C domain RB3967 PF00474 Sodium:solute symporter family RB399 PF00342 Phosphoglucose isomerase RB3999 PF02899 Phage integrase, N-terminal SAM-like domain RB3999 PF00589 Phage integrase family RB4013 PF00270 DEAD/DEAH box helicase RB4013 PF08482 ATP-dependent helicase C-terminal RB4013 PF00271 Helicase conserved C-terminal domain RB4013 PF04408 Helicase associated domain (HA2) RB4017 PF00884 Sulfatase RB4024 PF03629 Carbohydrate esterase, sialic acid-specific acetylesterase RB4024 PF00756 Putative esterase RB4031 PF00069 Protein kinase domain RB4031 PF03793 PASTA domain RB406 PF17389 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain RB406 PF00884 Sulfatase RB406 PF17390 Bacterial alpha-L-rhamnosidase C-terminal domain RB406 PF05592 Bacterial alpha-L-rhamnosidase concanavalin-like domain RB406 PF16347 Domain of unknown function (DUF4976) RB4061 PF01478 Type IV leader peptidase family RB4061 PF06750 Bacterial Peptidase A24 N-terminal domain RB4069 PF04055 Radical SAM superfamily RB4069 PF06463 Molybdenum Cofactor Synthesis C RB4081 PF17863 AAA lid domain RB4081 PF07726 ATPase family associated with various cellular activities (AAA) RB4087 PF13614 AAA domain RB409 PF00884 Sulfatase RB409 PF16385 Domain of unknown function RB4091 PF13808 DDE_Tnp_1-associated RB4091 PF01609 Transposase DDE domain RB410 PF00591 Glycosyl transferase family, a/b domain RB410 PF02885 Glycosyl transferase family, helical bundle domain RB4105 PF04002 RadC-like JAB domain RB4113 PF13808 DDE_Tnp_1-associated RB4113 PF01609 Transposase DDE domain RB4115 PF00174 Oxidoreductase molybdopterin binding domain RB4123 PF03079 ARD/ARD' family RB4129 PF16257 tagaturonate epimerase RB4131 PF00107 Zinc-binding dehydrogenase RB4131 PF08240 Alcohol dehydrogenase GroES-like domain RB4136 PF00072 Response regulator receiver domain RB4136 PF00486 Transcriptional regulatory protein, C terminal RB4137 PF00512 His Kinase A (phospho-acceptor) domain RB4137 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB4143 PF01425 Amidase RB4156 PF02621 Menaquinone biosynthesis RB4160 PF04055 Radical SAM superfamily RB4161 PF02446 4-alpha-glucanotransferase RB417 PF01156 Inosine-uridine preferring nucleoside hydrolase RB4173 PF02881 SRP54-type protein, helical bundle domain RB4173 PF00448 SRP54-type protein, GTPase domain RB4179 PF02954 Bacterial regulatory protein, Fis family RB4179 PF00072 Response regulator receiver domain RB4179 PF00158 Sigma-54 interaction domain RB4186 PF00069 Protein kinase domain RB4186 PF16919 Protein kinase G rubredoxin domain RB4186 PF16918 Protein kinase G tetratricopeptide repeat RB419 PF14032 PknH-like extracellular domain RB419 PF00069 Protein kinase domain RB422 PF00459 Inositol monophosphatase family RB4224 PF11798 IMS family HHH motif RB4224 PF11799 impB/mucB/samB family C-terminal domain RB4224 PF00817 impB/mucB/samB family RB4229 PF12867 DinB superfamily RB4229 PF03781 Sulfatase-modifying factor enzyme 1 RB423 PF01613 Flavin reductase like domain RB4230 PF10017 Histidine-specific methyltransferase, SAM-dependent RB4247 PF04408 Helicase associated domain (HA2) RB4247 PF00271 Helicase conserved C-terminal domain RB4247 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold RB4247 PF00270 DEAD/DEAH box helicase RB4247 PF11898 Domain of unknown function (DUF3418) RB4267 PF00194 Eukaryotic-type carbonic anhydrase RB4269 PF00089 Trypsin RB4270 PF01223 DNA/RNA non-specific endonuclease RB4288 PF01134 Glucose inhibited division protein A RB4292 PF12902 Ferritin-like RB4299 PF01527 Transposase RB4300 PF13276 HTH-like domain RB4300 PF00665 Integrase core domain RB4300 PF13333 Integrase core domain RB4305 PF02687 FtsX-like permease family RB4305 PF00005 ABC transporter RB4305 PF12704 MacB-like periplasmic core domain RB4309 PF00005 ABC transporter RB4309 PF12704 MacB-like periplasmic core domain RB4309 PF02687 FtsX-like permease family RB4310 PF13533 Biotin-lipoyl like RB4327 PF01554 MatE RB4333 PF00534 Glycosyl transferases group 1 RB4333 PF13439 Glycosyltransferase Family 4 RB4337 PF00535 Glycosyl transferase family 2 RB4337 PF02709 N-terminal domain of galactosyltransferase RB4366 PF01661 Macro domain RB4376 PF00199 Catalase RB4376 PF06628 Catalase-related immune-responsive RB4377 PF01594 AI-2E family transporter RB4382 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RB4382 PF17944 Arginine decarboxylase C-terminal helical extension RB4382 PF17810 Arginine decarboxylase helical bundle domain RB4386 PF00291 Pyridoxal-phosphate dependent enzyme RB4394 PF01965 DJ-1/PfpI family RB4396 PF07992 Pyridine nucleotide-disulphide oxidoreductase RB4396 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RB4399 PF14765 Polyketide synthase dehydratase RB4399 PF08659 KR domain RB4399 PF00698 Acyl transferase domain RB4399 PF08240 Alcohol dehydrogenase GroES-like domain RB4399 PF09277 Erythronolide synthase, docking RB4399 PF00550 Phosphopantetheine attachment site RB4399 PF08990 Erythronolide synthase docking RB4399 PF02801 Beta-ketoacyl synthase, C-terminal domain RB4399 PF00109 Beta-ketoacyl synthase, N-terminal domain RB4399 PF16197 Ketoacyl-synthetase C-terminal extension RB4416 PF00115 Cytochrome C and Quinol oxidase polypeptide I RB4417 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RB4417 PF00034 Cytochrome c RB4417 PF02790 Cytochrome C oxidase subunit II, transmembrane domain RB4419 PF02308 MgtC family RB4420 PF09335 SNARE associated Golgi protein RB4422 PF00512 His Kinase A (phospho-acceptor) domain RB4422 PF09456 RcsC Alpha-Beta-Loop (ABL) RB4422 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB4422 PF00072 Response regulator receiver domain RB4423 PF14437 MafB19-like deaminase RB4433 PF00210 Ferritin-like domain RB4436 PF04226 Transglycosylase associated protein RB4438 PF16242 Pyridoxamine 5'-phosphate oxidase like RB4454 PF00669 Bacterial flagellin N-terminal helical region RB4454 PF00700 Bacterial flagellin C-terminal helical region RB4459 PF00924 Mechanosensitive ion channel RB4459 PF05552 Conserved TM helix RB4460 PF10011 Predicted membrane protein (DUF2254) RB4474 PF05532 CsbD-like RB4484 PF01546 Peptidase family M20/M25/M40 RB4484 PF07687 Peptidase dimerisation domain RB4485 PF04107 Glutamate-cysteine ligase family 2(GCS2) RB4487 PF02954 Bacterial regulatory protein, Fis family RB4487 PF00158 Sigma-54 interaction domain RB4487 PF00072 Response regulator receiver domain RB4502 PF01679 Proteolipid membrane potential modulator RB4508 PF01339 CheB methylesterase RB4508 PF00072 Response regulator receiver domain RB4511 PF08448 PAS fold RB4511 PF03705 CheR methyltransferase, all-alpha domain RB4511 PF01739 CheR methyltransferase, SAM binding domain RB4511 PF01339 CheB methylesterase RB4513 PF03631 Virulence factor BrkB RB4517 PF01329 Pterin 4 alpha carbinolamine dehydratase RB4527 PF00109 Beta-ketoacyl synthase, N-terminal domain RB4527 PF02801 Beta-ketoacyl synthase, C-terminal domain RB4530 PF00873 AcrB/AcrD/AcrF family RB4532 PF00529 HlyD membrane-fusion protein of T1SS RB4532 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RB4540 PF02321 Outer membrane efflux protein RB4561 PF02838 Glycosyl hydrolase family 20, domain 2 RB4561 PF00728 Glycosyl hydrolase family 20, catalytic domain RB4564 PF00474 Sodium:solute symporter family RB4567 PF13419 Haloacid dehalogenase-like hydrolase RB4577 PF13537 Glutamine amidotransferase domain RB4577 PF00733 Asparagine synthase RB4578 PF01595 Cyclin M transmembrane N-terminal domain RB4578 PF03471 Transporter associated domain RB4578 PF00571 CBS domain RB4579 PF02130 Uncharacterized protein family UPF0054 RB4580 PF07697 7TM-HD extracellular RB4580 PF01966 HD domain RB4580 PF07698 7TM receptor with intracellular HD hydrolase RB4582 PF02562 PhoH-like protein RB4586 PF08534 Redoxin RB4591 PF02565 Recombination protein O C terminal RB4591 PF11967 Recombination protein O N terminal RB460 PF00271 Helicase conserved C-terminal domain RB460 PF00176 SNF2 family N-terminal domain RB4605 PF00701 Dihydrodipicolinate synthetase family RB4610 PF01330 RuvA N terminal domain RB4611 PF01029 NusB family RB4613 PF01521 Iron-sulphur cluster biosynthesis RB4619 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RB4619 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RB4629 PF06865 Pyrimidine/purine nucleoside phosphorylase RB4631 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RB4632 PF02699 Preprotein translocase subunit RB4633 PF02355 Protein export membrane protein RB4638 PF00884 Sulfatase RB4638 PF16347 Domain of unknown function (DUF4976) RB4646 PF00510 Cytochrome c oxidase subunit III RB4651 PF05690 Thiazole biosynthesis protein ThiG RB4673 PF02075 Crossover junction endodeoxyribonuclease RuvC RB4675 PF09190 DALR domain RB4675 PF01406 tRNA synthetases class I (C) catalytic domain RB4681 PF00313 'Cold-shock' DNA-binding domain RB470 PF13276 HTH-like domain RB470 PF00665 Integrase core domain RB470 PF13333 Integrase core domain RB4714 PF07728 AAA domain (dynein-related subfamily) RB4715 PF05762 VWA domain containing CoxE-like protein RB4728 PF00069 Protein kinase domain RB4737 PF01791 DeoC/LacD family aldolase RB4742 PF00582 Universal stress protein family RB4758 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB4758 PF00512 His Kinase A (phospho-acceptor) domain RB4758 PF00989 PAS fold RB4759 PF00989 PAS fold RB4759 PF00512 His Kinase A (phospho-acceptor) domain RB4759 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB4760 PF00072 Response regulator receiver domain RB4760 PF00486 Transcriptional regulatory protein, C terminal RB4770 PF03109 ABC1 family RB4784 PF16385 Domain of unknown function RB4784 PF00884 Sulfatase RB4787 PF00884 Sulfatase RB4787 PF16347 Domain of unknown function (DUF4976) RB4815 PF00884 Sulfatase RB4815 PF16385 Domain of unknown function RB4851 PF00884 Sulfatase RB4862 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) RB4862 PF13229 Right handed beta helix region RB4862 PF12708 Pectate lyase superfamily protein RB4864 PF00005 ABC transporter RB4864 PF02687 FtsX-like permease family RB4864 PF12704 MacB-like periplasmic core domain RB4866 PF00005 ABC transporter RB4867 PF01668 SmpB protein RB4868 PF04055 Radical SAM superfamily RB4869 PF06826 Predicted Permease Membrane Region RB4869 PF02080 TrkA-C domain RB4870 PF00873 AcrB/AcrD/AcrF family RB4872 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RB4877 PF00152 tRNA synthetases class II (D, K and N) RB4879 PF00230 Major intrinsic protein RB4880 PF16347 Domain of unknown function (DUF4976) RB4880 PF17389 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain RB4880 PF05592 Bacterial alpha-L-rhamnosidase concanavalin-like domain RB4880 PF00884 Sulfatase RB4880 PF17390 Bacterial alpha-L-rhamnosidase C-terminal domain RB4891 PF04945 YHS domain RB4894 PF00128 Alpha amylase, catalytic domain RB4894 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RB4903 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase RB4903 PF09364 XFP N-terminal domain RB4903 PF09363 XFP C-terminal domain RB4906 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RB4906 PF02874 ATP synthase alpha/beta family, beta-barrel domain RB4911 PF00119 ATP synthase A chain RB4913 PF00137 ATP synthase subunit C RB4915 PF00430 ATP synthase B/B' CF(0) RB4916 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RB4916 PF00306 ATP synthase alpha/beta chain, C terminal domain RB4916 PF02874 ATP synthase alpha/beta family, beta-barrel domain RB4917 PF00231 ATP synthase RB4925 PF00035 Double-stranded RNA binding motif RB4925 PF14622 Ribonuclease-III-like RB4934 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase RB4936 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 RB4936 PF00132 Bacterial transferase hexapeptide (six repeats) RB4937 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RB4937 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RB4944 PF00311 Phosphoenolpyruvate carboxylase RB4960 PF16199 Radical_SAM C-terminal domain RB4960 PF04055 Radical SAM superfamily RB4968 PF00561 alpha/beta hydrolase fold RB497 PF17863 AAA lid domain RB497 PF07726 ATPase family associated with various cellular activities (AAA) RB4981 PF00106 short chain dehydrogenase RB4982 PF05368 NmrA-like family RB4994 PF00672 HAMP domain RB4994 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB4994 PF00512 His Kinase A (phospho-acceptor) domain RB4995 PF00885 6,7-dimethyl-8-ribityllumazine synthase RB4997 PF07497 Rho termination factor, RNA-binding domain RB4997 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RB5003 PF00909 Ammonium Transporter Family RB5005 PF00543 Nitrogen regulatory protein P-II RB5015 PF00583 Acetyltransferase (GNAT) family RB5028 PF03793 PASTA domain RB5028 PF00069 Protein kinase domain RB5029 PF01209 ubiE/COQ5 methyltransferase family RB5039 PF00732 GMC oxidoreductase RB5039 PF05199 GMC oxidoreductase RB5050 PF00156 Phosphoribosyl transferase domain RB5053 PF01261 Xylose isomerase-like TIM barrel RB5055 PF16326 ABC transporter C-terminal domain RB5055 PF00005 ABC transporter RB5055 PF12848 ABC transporter RB5056 PF00005 ABC transporter RB5071 PF00114 Pilin (bacterial filament) RB5071 PF07963 Prokaryotic N-terminal methylation motif RB5084 PF01266 FAD dependent oxidoreductase RB5084 PF16901 C-terminal domain of alpha-glycerophosphate oxidase RB5097 PF00730 HhH-GPD superfamily base excision DNA repair protein RB5098 PF00132 Bacterial transferase hexapeptide (six repeats) RB5117 PF00873 AcrB/AcrD/AcrF family RB5126 PF02119 Flagellar P-ring protein RB5134 PF01725 Ham1 family RB5135 PF01242 6-pyruvoyl tetrahydropterin synthase RB5140 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RB5140 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RB5146 PF16347 Domain of unknown function (DUF4976) RB5146 PF00884 Sulfatase RB5151 PF00291 Pyridoxal-phosphate dependent enzyme RB5151 PF00585 C-terminal regulatory domain of Threonine dehydratase RB5152 PF00005 ABC transporter RB5154 PF10502 Signal peptidase, peptidase S26 RB5170 PF06750 Bacterial Peptidase A24 N-terminal domain RB5170 PF01478 Type IV leader peptidase family RB5175 PF13614 AAA domain RB5177 PF00795 Carbon-nitrogen hydrolase RB5178 PF09180 Prolyl-tRNA synthetase, C-terminal RB5178 PF03129 Anticodon binding domain RB5178 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RB5179 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RB5179 PF00117 Glutamine amidotransferase class-I RB5186 PF01926 50S ribosome-binding GTPase RB5186 PF06071 Protein of unknown function (DUF933) RB5191 PF02547 Queuosine biosynthesis protein RB5196 PF00128 Alpha amylase, catalytic domain RB5197 PF00534 Glycosyl transferases group 1 RB5197 PF00862 Sucrose synthase RB5198 PF00294 pfkB family carbohydrate kinase RB5200 PF00128 Alpha amylase, catalytic domain RB5200 PF11941 Domain of unknown function (DUF3459) RB5205 PF05698 Bacterial trigger factor protein (TF) C-terminus RB5208 PF09825 Biotin-protein ligase, N terminal RB522 PF12833 Helix-turn-helix domain RB5226 PF03352 Methyladenine glycosylase RB5245 PF03006 Haemolysin-III related RB5256 PF03425 Carbohydrate binding domain (family 11) RB5256 PF00150 Cellulase (glycosyl hydrolase family 5) RB5256 PF00404 Dockerin type I domain RB5259 PF00176 SNF2 family N-terminal domain RB5259 PF00271 Helicase conserved C-terminal domain RB5259 PF12419 SNF2 Helicase protein RB5277 PF00701 Dihydrodipicolinate synthetase family RB5278 PF01266 FAD dependent oxidoreductase RB5281 PF00884 Sulfatase RB5282 PF16347 Domain of unknown function (DUF4976) RB5282 PF00884 Sulfatase RB5290 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RB5294 PF00884 Sulfatase RB5295 PF00884 Sulfatase RB5305 PF16347 Domain of unknown function (DUF4976) RB5305 PF00884 Sulfatase RB5308 PF12833 Helix-turn-helix domain RB5308 PF01965 DJ-1/PfpI family RB5316 PF00544 Pectate lyase RB5320 PF08240 Alcohol dehydrogenase GroES-like domain RB5320 PF00107 Zinc-binding dehydrogenase RB5336 PF00355 Rieske [2Fe-2S] domain RB5343 PF13361 UvrD-like helicase C-terminal domain RB5343 PF00580 UvrD/REP helicase N-terminal domain RB5343 PF12705 PD-(D/E)XK nuclease superfamily RB5356 PF14245 Type IV pilin PilA RB5356 PF07963 Prokaryotic N-terminal methylation motif RB536 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ RB5363 PF00258 Flavodoxin RB5365 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RB5378 PF00884 Sulfatase RB5383 PF00884 Sulfatase RB539 PF02464 Competence-damaged protein RB539 PF18146 Damage-inducible protein CinA KH domain RB539 PF00994 Probable molybdopterin binding domain RB5392 PF02153 Prephenate dehydrogenase RB5392 PF01842 ACT domain RB5395 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain RB5395 PF02769 AIR synthase related protein, C-terminal domain RB5395 PF00586 AIR synthase related protein, N-terminal domain RB5405 PF01812 5-formyltetrahydrofolate cyclo-ligase family RB5406 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RB5406 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RB5414 PF00562 RNA polymerase Rpb2, domain 6 RB5414 PF04561 RNA polymerase Rpb2, domain 2 RB5414 PF10385 RNA polymerase beta subunit external 1 domain RB5414 PF04565 RNA polymerase Rpb2, domain 3 RB5414 PF04563 RNA polymerase beta subunit RB5414 PF04560 RNA polymerase Rpb2, domain 7 RB5416 PF05000 RNA polymerase Rpb1, domain 4 RB5416 PF04997 RNA polymerase Rpb1, domain 1 RB5416 PF04998 RNA polymerase Rpb1, domain 5 RB5416 PF04983 RNA polymerase Rpb1, domain 3 RB5416 PF00623 RNA polymerase Rpb1, domain 2 RB5417 PF00884 Sulfatase RB5417 PF16347 Domain of unknown function (DUF4976) RB5424 PF00884 Sulfatase RB5434 PF03144 Elongation factor Tu domain 2 RB5434 PF00679 Elongation factor G C-terminus RB5434 PF14492 Elongation Factor G, domain II RB5434 PF00009 Elongation factor Tu GTP binding domain RB5434 PF03764 Elongation factor G, domain IV RB5437 PF01048 Phosphorylase superfamily RB5444 PF00438 S-adenosylmethionine synthetase, N-terminal domain RB5444 PF02772 S-adenosylmethionine synthetase, central domain RB5444 PF02773 S-adenosylmethionine synthetase, C-terminal domain RB5465 PF00990 Diguanylate cyclase, GGDEF domain RB5465 PF07694 5TMR of 5TMR-LYT RB5472 PF00486 Transcriptional regulatory protein, C terminal RB5472 PF00072 Response regulator receiver domain RB5477 PF00072 Response regulator receiver domain RB5478 PF00072 Response regulator receiver domain RB5479 PF00672 HAMP domain RB5479 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB5479 PF00512 His Kinase A (phospho-acceptor) domain RB5479 PF13426 PAS domain RB548 PF00128 Alpha amylase, catalytic domain RB548 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RB548 PF02806 Alpha amylase, C-terminal all-beta domain RB5482 PF00072 Response regulator receiver domain RB5482 PF01339 CheB methylesterase RB5490 PF00873 AcrB/AcrD/AcrF family RB5500 PF01709 Transcriptional regulator RB5503 PF02033 Ribosome-binding factor A RB5504 PF11987 Translation-initiation factor 2 RB5504 PF04760 Translation initiation factor IF-2, N-terminal region RB5504 PF00009 Elongation factor Tu GTP binding domain RB5507 PF08529 NusA N-terminal domain RB5507 PF13184 NusA-like KH domain RB5540 PF02585 GlcNAc-PI de-N-acetylase RB5543 PF08264 Anticodon-binding domain of tRNA RB5543 PF01588 Putative tRNA binding domain RB5543 PF09334 tRNA synthetases class I (M) RB555 PF04542 Sigma-70 region 2 RB555 PF08281 Sigma-70, region 4 RB5560 PF00290 Tryptophan synthase alpha chain RB5566 PF00004 ATPase family associated with various cellular activities (AAA) RB5566 PF17862 AAA+ lid domain RB5566 PF01434 Peptidase family M41 RB5568 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain RB5568 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase RB5568 PF13288 DXP reductoisomerase C-terminal domain RB5571 PF17820 PDZ domain RB5571 PF02163 Peptidase family M50 RB5571 PF17820 PDZ domain RB5571 PF02163 Peptidase family M50 RB5577 PF08450 SMP-30/Gluconolactonase/LRE-like region RB5593 PF00069 Protein kinase domain RB560 PF03795 YCII-related domain RB5601 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase RB5603 PF01634 ATP phosphoribosyltransferase RB5603 PF08029 HisG, C-terminal domain RB5606 PF00005 ABC transporter RB5606 PF17755 UvrA DNA-binding domain RB5606 PF17760 UvrA interaction domain RB5616 PF01738 Dienelactone hydrolase family RB5619 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RB5619 PF01926 50S ribosome-binding GTPase RB5620 PF03167 Uracil DNA glycosylase superfamily RB563 PF03795 YCII-related domain RB5630 PF13614 AAA domain RB5641 PF03553 Na+/H+ antiporter family RB5642 PF14842 FliG N-terminal domain RB5642 PF01706 FliG C-terminal domain RB5642 PF14841 FliG middle domain RB5645 PF13180 PDZ domain RB5645 PF17820 PDZ domain RB5647 PF04055 Radical SAM superfamily RB5647 PF13282 Domain of unknown function (DUF4070) RB5647 PF02310 B12 binding domain RB5653 PF07992 Pyridine nucleotide-disulphide oxidoreductase RB5653 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RB5654 PF01645 Conserved region in glutamate synthase RB5654 PF04898 Glutamate synthase central domain RB5654 PF00310 Glutamine amidotransferases class-II RB5654 PF01493 GXGXG motif RB5655 PF03466 LysR substrate binding domain RB5655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RB5670 PF00581 Rhodanese-like domain RB5671 PF00795 Carbon-nitrogen hydrolase RB5671 PF02540 NAD synthase RB5674 PF00149 Calcineurin-like phosphoesterase RB5675 PF02622 Uncharacterized ACR, COG1678 RB5678 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RB5678 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RB5681 PF05698 Bacterial trigger factor protein (TF) C-terminus RB5681 PF05697 Bacterial trigger factor protein (TF) RB5685 PF04476 4-HFC-P synthase RB5689 PF01612 3'-5' exonuclease RB5689 PF00570 HRDC domain RB5695 PF00795 Carbon-nitrogen hydrolase RB5696 PF00459 Inositol monophosphatase family RB5697 PF00578 AhpC/TSA family RB5701 PF13183 4Fe-4S dicluster domain RB5701 PF01565 FAD binding domain RB5701 PF02913 FAD linked oxidases, C-terminal domain RB5705 PF02391 MoaE protein RB5708 PF02623 FliW protein RB5717 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RB5717 PF07992 Pyridine nucleotide-disulphide oxidoreductase RB5725 PF01138 3' exoribonuclease family, domain 1 RB5725 PF03725 3' exoribonuclease family, domain 2 RB5730 PF02540 NAD synthase RB5731 PF03793 PASTA domain RB5731 PF00069 Protein kinase domain RB5736 PF00072 Response regulator receiver domain RB5736 PF00196 Bacterial regulatory proteins, luxR family RB5744 PF00211 Adenylate and Guanylate cyclase catalytic domain RB5747 PF03485 Arginyl tRNA synthetase N terminal domain RB5747 PF05746 DALR anticodon binding domain RB5747 PF00750 tRNA synthetases class I (R) RB5753 PF00578 AhpC/TSA family RB5754 PF00012 Hsp70 protein RB5755 PF00012 Hsp70 protein RB5758 PF03741 Integral membrane protein TerC family RB5762 PF03819 MazG nucleotide pyrophosphohydrolase domain RB5766 PF07992 Pyridine nucleotide-disulphide oxidoreductase RB5768 PF00924 Mechanosensitive ion channel RB5768 PF12795 Mechanosensitive ion channel porin domain RB5768 PF12794 Mechanosensitive ion channel inner membrane domain 1 RB5774 PF01139 tRNA-splicing ligase RtcB RB5776 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RB5776 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RB5778 PF00245 Alkaline phosphatase RB5780 PF00072 Response regulator receiver domain RB5780 PF00486 Transcriptional regulatory protein, C terminal RB5801 PF00312 Ribosomal protein S15 RB5804 PF00575 S1 RNA binding domain RB5804 PF01138 3' exoribonuclease family, domain 1 RB5804 PF00013 KH domain RB5804 PF03725 3' exoribonuclease family, domain 2 RB5804 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RB5821 PF07690 Major Facilitator Superfamily RB5824 PF01926 50S ribosome-binding GTPase RB5830 PF13091 PLD-like domain RB5830 PF13396 Phospholipase_D-nuclease N-terminal RB5837 PF10502 Signal peptidase, peptidase S26 RB5846 PF00535 Glycosyl transferase family 2 RB5847 PF00156 Phosphoribosyl transferase domain RB5856 PF08240 Alcohol dehydrogenase GroES-like domain RB5856 PF00107 Zinc-binding dehydrogenase RB5861 PF01266 FAD dependent oxidoreductase RB5861 PF05430 S-adenosyl-L-methionine-dependent methyltransferase RB5871 PF01434 Peptidase family M41 RB5871 PF00004 ATPase family associated with various cellular activities (AAA) RB5871 PF17862 AAA+ lid domain RB5871 PF06480 FtsH Extracellular RB5876 PF07714 Protein tyrosine kinase RB5887 PF00665 Integrase core domain RB5887 PF13333 Integrase core domain RB5887 PF13276 HTH-like domain RB5888 PF01527 Transposase RB5905 PF00149 Calcineurin-like phosphoesterase RB5918 PF03099 Biotin/lipoate A/B protein ligase family RB5918 PF02237 Biotin protein ligase C terminal domain RB5932 PF00348 Polyprenyl synthetase RB5934 PF13243 Squalene-hopene cyclase C-terminal domain RB5934 PF13249 Squalene-hopene cyclase N-terminal domain RB5940 PF00437 Type II/IV secretion system protein RB5943 PF00072 Response regulator receiver domain RB5943 PF00486 Transcriptional regulatory protein, C terminal RB5948 PF00107 Zinc-binding dehydrogenase RB5948 PF08240 Alcohol dehydrogenase GroES-like domain RB5961 PF00132 Bacterial transferase hexapeptide (six repeats) RB5964 PF00990 Diguanylate cyclase, GGDEF domain RB5969 PF00270 DEAD/DEAH box helicase RB5969 PF00271 Helicase conserved C-terminal domain RB5969 PF00570 HRDC domain RB5969 PF16124 RecQ zinc-binding RB5969 PF09382 RQC domain RB5971 PF02653 Branched-chain amino acid transport system / permease component RB5972 PF00005 ABC transporter RB5973 PF13407 Periplasmic binding protein domain RB5983 PF00696 Amino acid kinase family RB5986 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RB5986 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RB5998 PF02502 Ribose/Galactose Isomerase RB5999 PF02899 Phage integrase, N-terminal SAM-like domain RB5999 PF00589 Phage integrase family RB6033 PF00069 Protein kinase domain RB6040 PF01595 Cyclin M transmembrane N-terminal domain RB6040 PF03471 Transporter associated domain RB6040 PF00571 CBS domain RB6042 PF01595 Cyclin M transmembrane N-terminal domain RB6042 PF03471 Transporter associated domain RB6042 PF00571 CBS domain RB605 PF16385 Domain of unknown function RB605 PF00884 Sulfatase RB6056 PF07726 ATPase family associated with various cellular activities (AAA) RB6056 PF17863 AAA lid domain RB6061 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RB6061 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RB6061 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RB6061 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RB6063 PF01544 CorA-like Mg2+ transporter protein RB6065 PF06470 SMC proteins Flexible Hinge Domain RB6065 PF02463 RecF/RecN/SMC N terminal domain RB607 PF00884 Sulfatase RB6078 PF04542 Sigma-70 region 2 RB6078 PF08281 Sigma-70, region 4 RB609 PF01738 Dienelactone hydrolase family RB6090 PF02261 Aspartate decarboxylase RB6092 PF02163 Peptidase family M50 RB6120 PF13180 PDZ domain RB6126 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RB6126 PF01872 RibD C-terminal domain RB6133 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain RB6133 PF02222 ATP-grasp domain RB6135 PF00731 AIR carboxylase RB6139 PF04229 GrpB protein RB6142 PF00248 Aldo/keto reductase family RB6145 PF00756 Putative esterase RB6147 PF01761 3-dehydroquinate synthase RB6166 PF13495 Phage integrase, N-terminal SAM-like domain RB6166 PF00589 Phage integrase family RB6167 PF14319 Transposase zinc-binding domain RB6167 PF04986 Putative transposase RB6171 PF13495 Phage integrase, N-terminal SAM-like domain RB6171 PF00589 Phage integrase family RB6180 PF02416 mttA/Hcf106 family RB6196 PF00884 Sulfatase RB6199 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RB6199 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RB6201 PF17757 UvrB interaction domain RB6201 PF03461 TRCF domain RB6201 PF00271 Helicase conserved C-terminal domain RB6201 PF00270 DEAD/DEAH box helicase RB6201 PF02559 CarD-like/TRCF domain RB6215 PF00464 Serine hydroxymethyltransferase RB6217 PF00072 Response regulator receiver domain RB6217 PF00486 Transcriptional regulatory protein, C terminal RB6226 PF08331 Domain of unknown function (DUF1730) RB6236 PF00005 ABC transporter RB6237 PF02875 Mur ligase family, glutamate ligase domain RB6237 PF08245 Mur ligase middle domain RB6238 PF00571 CBS domain RB6238 PF01595 Cyclin M transmembrane N-terminal domain RB6241 PF13439 Glycosyltransferase Family 4 RB6241 PF00534 Glycosyl transferases group 1 RB6246 PF00266 Aminotransferase class-V RB6248 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RB6248 PF01842 ACT domain RB6248 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RB6254 PF00483 Nucleotidyl transferase RB6254 PF01050 Mannose-6-phosphate isomerase RB6259 PF01618 MotA/TolQ/ExbB proton channel family RB6269 PF16363 GDP-mannose 4,6 dehydratase RB6271 PF02899 Phage integrase, N-terminal SAM-like domain RB6271 PF00589 Phage integrase family RB6272 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RB6272 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RB6276 PF00216 Bacterial DNA-binding protein RB6278 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RB6285 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RB6285 PF05221 S-adenosyl-L-homocysteine hydrolase RB6291 PF12127 SigmaW regulon antibacterial RB6300 PF00117 Glutamine amidotransferase class-I RB6302 PF00293 NUDIX domain RB6305 PF00535 Glycosyl transferase family 2 RB631 PF03793 PASTA domain RB631 PF00069 Protein kinase domain RB6315 PF00196 Bacterial regulatory proteins, luxR family RB6315 PF00072 Response regulator receiver domain RB6331 PF02581 Thiamine monophosphate synthase RB6331 PF17792 ThiD2 family RB6344 PF13662 Toprim domain RB6344 PF08278 DNA primase DnaG DnaB-binding RB6344 PF10410 DnaB-helicase binding domain of primase RB6344 PF08275 DNA primase catalytic core, N-terminal domain RB6344 PF01807 CHC2 zinc finger RB6347 PF00140 Sigma-70 factor, region 1.2 RB6347 PF03979 Sigma-70 factor, region 1.1 RB6347 PF04542 Sigma-70 region 2 RB6347 PF04539 Sigma-70 region 3 RB6347 PF04545 Sigma-70, region 4 RB6350 PF00115 Cytochrome C and Quinol oxidase polypeptide I RB6353 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RB6353 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP RB6355 PF12801 4Fe-4S binding domain RB6355 PF13746 4Fe-4S dicluster domain RB6355 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase RB6360 PF00403 Heavy-metal-associated domain RB637 PF04542 Sigma-70 region 2 RB637 PF08281 Sigma-70, region 4 RB6370 PF02954 Bacterial regulatory protein, Fis family RB6370 PF00158 Sigma-54 interaction domain RB6370 PF00072 Response regulator receiver domain RB6373 PF12631 MnmE helical domain RB6373 PF10396 GTP-binding protein TrmE N-terminus RB6373 PF01926 50S ribosome-binding GTPase RB6377 PF13506 Glycosyl transferase family 21 RB6383 PF04349 Periplasmic glucan biosynthesis protein, MdoG RB6384 PF08534 Redoxin RB6389 PF12127 SigmaW regulon antibacterial RB6391 PF03631 Virulence factor BrkB RB6394 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RB6394 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RB641 PF09308 LuxQ, periplasmic RB641 PF00512 His Kinase A (phospho-acceptor) domain RB641 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB641 PF00072 Response regulator receiver domain RB6411 PF01509 TruB family pseudouridylate synthase (N terminal domain) RB6415 PF00037 4Fe-4S binding domain RB6415 PF11953 Domain of unknown function (DUF3470) RB6416 PF17785 PUA-like domain RB6416 PF10672 S-adenosylmethionine-dependent methyltransferase RB6425 PF00444 Ribosomal protein L36 RB6428 PF02469 Fasciclin domain RB6435 PF01648 4'-phosphopantetheinyl transferase superfamily RB6436 PF00579 tRNA synthetases class I (W and Y) RB6442 PF01053 Cys/Met metabolism PLP-dependent enzyme RB6443 PF01053 Cys/Met metabolism PLP-dependent enzyme RB6464 PF16363 GDP-mannose 4,6 dehydratase RB6466 PF03144 Elongation factor Tu domain 2 RB6466 PF00009 Elongation factor Tu GTP binding domain RB6466 PF00679 Elongation factor G C-terminus RB6467 PF00300 Histidine phosphatase superfamily (branch 1) RB6469 PF00005 ABC transporter RB6470 PF12679 ABC-2 family transporter protein RB6472 PF00953 Glycosyl transferase family 4 RB6482 PF00849 RNA pseudouridylate synthase RB6482 PF01479 S4 domain RB6483 PF00270 DEAD/DEAH box helicase RB6483 PF00271 Helicase conserved C-terminal domain RB6483 PF09382 RQC domain RB6483 PF00570 HRDC domain RB6483 PF16124 RecQ zinc-binding RB6484 PF00809 Pterin binding enzyme RB6485 PF06969 HemN C-terminal domain RB6485 PF04055 Radical SAM superfamily RB6488 PF08501 Shikimate dehydrogenase substrate binding domain RB6488 PF01488 Shikimate / quinate 5-dehydrogenase RB6490 PF13180 PDZ domain RB6491 PF00309 Sigma-54 factor, Activator interacting domain (AID) RB6491 PF04963 Sigma-54 factor, core binding domain RB6491 PF04552 Sigma-54, DNA binding domain RB6492 PF13662 Toprim domain RB6492 PF02132 RecR protein RB6494 PF12169 DNA polymerase III subunits gamma and tau domain III RB6499 PF00892 EamA-like transporter family RB6500 PF08240 Alcohol dehydrogenase GroES-like domain RB6500 PF00698 Acyl transferase domain RB6500 PF02801 Beta-ketoacyl synthase, C-terminal domain RB6500 PF16197 Ketoacyl-synthetase C-terminal extension RB6500 PF00109 Beta-ketoacyl synthase, N-terminal domain RB6500 PF14765 Polyketide synthase dehydratase RB6500 PF08659 KR domain RB6500 PF00550 Phosphopantetheine attachment site RB6520 PF00534 Glycosyl transferases group 1 RB6520 PF13439 Glycosyltransferase Family 4 RB6524 PF00156 Phosphoribosyl transferase domain RB6524 PF01171 PP-loop family RB6524 PF11734 TilS substrate C-terminal domain RB6530 PF04337 Protein of unknown function, DUF480 RB6533 PF13193 AMP-binding enzyme C-terminal domain RB6533 PF00501 AMP-binding enzyme RB6537 PF01263 Aldose 1-epimerase RB6538 PF00474 Sodium:solute symporter family RB6542 PF12833 Helix-turn-helix domain RB655 PF10005 zinc-ribbon domain RB655 PF15887 Putative zinc-binding metallo-peptidase RB6552 PF03462 PCRF domain RB6552 PF00472 RF-1 domain RB6563 PF00793 DAHP synthetase I family RB658 PF01594 AI-2E family transporter RB6588 PF01048 Phosphorylase superfamily RB6599 PF00884 Sulfatase RB6599 PF16347 Domain of unknown function (DUF4976) RB6603 PF17863 AAA lid domain RB6603 PF07726 ATPase family associated with various cellular activities (AAA) RB6607 PF01121 Dephospho-CoA kinase RB6616 PF02844 Phosphoribosylglycinamide synthetase, N domain RB6616 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RB6616 PF02843 Phosphoribosylglycinamide synthetase, C domain RB6623 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain RB6623 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain RB6624 PF02397 Bacterial sugar transferase RB6643 PF04542 Sigma-70 region 2 RB6643 PF08281 Sigma-70, region 4 RB6644 PF00069 Protein kinase domain RB6644 PF03793 PASTA domain RB6654 PF00534 Glycosyl transferases group 1 RB6654 PF08323 Starch synthase catalytic domain RB6670 PF03481 Putative GTP-binding controlling metal-binding RB6670 PF01300 Telomere recombination RB6683 PF00285 Citrate synthase, C-terminal domain RB6686 PF00072 Response regulator receiver domain RB6686 PF00486 Transcriptional regulatory protein, C terminal RB6688 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RB6688 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RB6690 PF01116 Fructose-bisphosphate aldolase class-II RB6708 PF13276 HTH-like domain RB6708 PF00665 Integrase core domain RB6708 PF13333 Integrase core domain RB6709 PF01527 Transposase RB6716 PF03600 Citrate transporter RB6725 PF07859 alpha/beta hydrolase fold RB6729 PF01791 DeoC/LacD family aldolase RB6746 PF13847 Methyltransferase domain RB6751 PF17871 AAA lid domain RB6751 PF02861 Clp amino terminal domain, pathogenicity island component RB6751 PF10431 C-terminal, D2-small domain, of ClpB protein RB6751 PF00004 ATPase family associated with various cellular activities (AAA) RB6751 PF07724 AAA domain (Cdc48 subfamily) RB6753 PF00425 chorismate binding enzyme RB6753 PF04715 Anthranilate synthase component I, N terminal region RB6755 PF00501 AMP-binding enzyme RB6756 PF02951 Prokaryotic glutathione synthetase, N-terminal domain RB6756 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain RB6759 PF02289 Cyclohydrolase (MCH) RB6765 PF00884 Sulfatase RB6767 PF13361 UvrD-like helicase C-terminal domain RB6767 PF00580 UvrD/REP helicase N-terminal domain RB6770 PF01016 Ribosomal L27 protein RB678 PF06134 L-rhamnose isomerase (RhaA) RB6780 PF00140 Sigma-70 factor, region 1.2 RB6780 PF04542 Sigma-70 region 2 RB6780 PF04539 Sigma-70 region 3 RB6780 PF04545 Sigma-70, region 4 RB6781 PF05592 Bacterial alpha-L-rhamnosidase concanavalin-like domain RB6781 PF17389 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain RB6781 PF17390 Bacterial alpha-L-rhamnosidase C-terminal domain RB6781 PF16347 Domain of unknown function (DUF4976) RB6781 PF00884 Sulfatase RB680 PF02311 AraC-like ligand binding domain RB680 PF12833 Helix-turn-helix domain RB6808 PF01597 Glycine cleavage H-protein RB6809 PF00586 AIR synthase related protein, N-terminal domain RB6809 PF02769 AIR synthase related protein, C-terminal domain RB681 PF00596 Class II Aldolase and Adducin N-terminal domain RB6813 PF00578 AhpC/TSA family RB6818 PF13426 PAS domain RB6818 PF13188 PAS domain RB6818 PF00989 PAS fold RB6818 PF00512 His Kinase A (phospho-acceptor) domain RB6818 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB6821 PF00155 Aminotransferase class I and II RB6822 PF01264 Chorismate synthase RB6823 PF04539 Sigma-70 region 3 RB6823 PF04542 Sigma-70 region 2 RB6823 PF00140 Sigma-70 factor, region 1.2 RB6823 PF03979 Sigma-70 factor, region 1.1 RB6823 PF04545 Sigma-70, region 4 RB6825 PF03710 Glutamate-ammonia ligase adenylyltransferase RB6825 PF08335 GlnD PII-uridylyltransferase RB6827 PF03793 PASTA domain RB6827 PF00069 Protein kinase domain RB6828 PF03900 Porphobilinogen deaminase, C-terminal domain RB6828 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RB683 PF00171 Aldehyde dehydrogenase family RB6831 PF00202 Aminotransferase class-III RB684 PF00884 Sulfatase RB6841 PF00132 Bacterial transferase hexapeptide (six repeats) RB6841 PF00483 Nucleotidyl transferase RB6844 PF14572 Phosphoribosyl synthetase-associated domain RB6844 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RB6845 PF13614 AAA domain RB686 PF00884 Sulfatase RB6860 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RB6873 PF00884 Sulfatase RB6873 PF16385 Domain of unknown function RB6881 PF02687 FtsX-like permease family RB6881 PF12704 MacB-like periplasmic core domain RB6883 PF00005 ABC transporter RB6895 PF00953 Glycosyl transferase family 4 RB6895 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 RB6920 PF07963 Prokaryotic N-terminal methylation motif RB6930 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RB6930 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RB6932 PF00291 Pyridoxal-phosphate dependent enzyme RB6933 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RB6935 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase RB6935 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg RB6935 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II RB6945 PF00211 Adenylate and Guanylate cyclase catalytic domain RB695 PF00884 Sulfatase RB6956 PF00884 Sulfatase RB6959 PF05496 Holliday junction DNA helicase RuvB P-loop domain RB6959 PF17864 RuvB AAA lid domain RB6959 PF05491 RuvB C-terminal winged helix domain RB6962 PF04079 Segregation and condensation complex subunit ScpB RB6963 PF04055 Radical SAM superfamily RB6967 PF01594 AI-2E family transporter RB6973 PF03848 Tellurite resistance protein TehB RB6977 PF01704 UTP--glucose-1-phosphate uridylyltransferase RB6982 PF00005 ABC transporter RB6983 PF02687 FtsX-like permease family RB6983 PF12704 MacB-like periplasmic core domain RB6985 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RB6985 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RB6993 PF01507 Phosphoadenosine phosphosulfate reductase family RB6994 PF02082 Transcriptional regulator RB6996 PF00669 Bacterial flagellin N-terminal helical region RB6996 PF07196 Flagellin hook IN motif RB6996 PF00700 Bacterial flagellin C-terminal helical region RB700 PF08531 Alpha-L-rhamnosidase N-terminal domain RB700 PF17390 Bacterial alpha-L-rhamnosidase C-terminal domain RB700 PF05592 Bacterial alpha-L-rhamnosidase concanavalin-like domain RB700 PF17389 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain RB7000 PF01541 GIY-YIG catalytic domain RB7000 PF02151 UvrB/uvrC motif RB7000 PF08459 UvrC Helix-hairpin-helix N-terminal RB7008 PF13167 GTP-binding GTPase N-terminal RB7008 PF01926 50S ribosome-binding GTPase RB7008 PF16360 GTP-binding GTPase Middle Region RB7010 PF08459 UvrC Helix-hairpin-helix N-terminal RB7010 PF02151 UvrB/uvrC motif RB7010 PF01541 GIY-YIG catalytic domain RB7020 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RB7020 PF02602 Uroporphyrinogen-III synthase HemD RB7022 PF01649 Ribosomal protein S20 RB704 PF01527 Transposase RB7058 PF00069 Protein kinase domain RB706 PF13276 HTH-like domain RB706 PF00665 Integrase core domain RB706 PF13333 Integrase core domain RB7070 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RB7070 PF01000 RNA polymerase Rpb3/RpoA insert domain RB7070 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RB708 PF00884 Sulfatase RB708 PF16347 Domain of unknown function (DUF4976) RB7084 PF07085 DRTGG domain RB7084 PF01368 DHH family RB7084 PF00571 CBS domain RB7084 PF02833 DHHA2 domain RB7087 PF04127 DNA / pantothenate metabolism flavoprotein RB7087 PF02441 Flavoprotein RB7088 PF01192 RNA polymerase Rpb6 RB7090 PF00625 Guanylate kinase RB7091 PF08340 Domain of unknown function (DUF1732) RB7091 PF03755 YicC-like family, N-terminal region RB7095 PF00121 Triosephosphate isomerase RB7096 PF18152 DAHP synthase ferredoxin-like domain RB7096 PF00793 DAHP synthetase I family RB7098 PF04542 Sigma-70 region 2 RB7098 PF08281 Sigma-70, region 4 RB7099 PF00092 von Willebrand factor type A domain RB7099 PF12450 von Willebrand factor RB7099 PF12034 Domain of unknown function (DUF3520) RB7112 PF03483 B3/4 domain RB7112 PF03147 Ferredoxin-fold anticodon binding domain RB7112 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain RB7112 PF03484 tRNA synthetase B5 domain RB7114 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RB7114 PF01409 tRNA synthetases class II core domain (F) RB7115 PF00453 Ribosomal protein L20 RB7117 PF01632 Ribosomal protein L35 RB7123 PF00072 Response regulator receiver domain RB7123 PF01339 CheB methylesterase RB7130 PF07670 Nucleoside recognition RB7130 PF17910 FeoB cytosolic helical domain RB7130 PF07664 Ferrous iron transport protein B C terminus RB7130 PF02421 Ferrous iron transport protein B RB7130 PF04023 FeoA domain RB7134 PF00005 ABC transporter RB7135 PF02405 Permease MlaE RB7146 PF13439 Glycosyltransferase Family 4 RB7146 PF00534 Glycosyl transferases group 1 RB7166 PF00005 ABC transporter RB7167 PF07977 FabA-like domain RB7168 PF00550 Phosphopantetheine attachment site RB7169 PF07977 FabA-like domain RB7171 PF00109 Beta-ketoacyl synthase, N-terminal domain RB7171 PF02801 Beta-ketoacyl synthase, C-terminal domain RB7173 PF00348 Polyprenyl synthetase RB7175 PF01967 MoaC family RB7184 PF00072 Response regulator receiver domain RB7184 PF00196 Bacterial regulatory proteins, luxR family RB7193 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RB7198 PF03965 Penicillinase repressor RB720 PF12411 Choline sulfatase enzyme C terminal RB720 PF00884 Sulfatase RB7200 PF00905 Penicillin binding protein transpeptidase domain RB7200 PF05569 BlaR1 peptidase M56 RB7201 PF08459 UvrC Helix-hairpin-helix N-terminal RB7201 PF02151 UvrB/uvrC motif RB7201 PF01541 GIY-YIG catalytic domain RB7206 PF01964 Radical SAM ThiC family RB7208 PF00004 ATPase family associated with various cellular activities (AAA) RB7208 PF07724 AAA domain (Cdc48 subfamily) RB7208 PF10431 C-terminal, D2-small domain, of ClpB protein RB7208 PF02861 Clp amino terminal domain, pathogenicity island component RB7208 PF17871 AAA lid domain RB7210 PF01895 PhoU domain RB7211 PF00005 ABC transporter RB7212 PF00528 Binding-protein-dependent transport system inner membrane component RB7213 PF00528 Binding-protein-dependent transport system inner membrane component RB7215 PF12849 PBP superfamily domain RB7220 PF02554 Carbon starvation protein CstA RB7220 PF13722 5TM C-terminal transporter carbon starvation CstA RB7223 PF07992 Pyridine nucleotide-disulphide oxidoreductase RB7232 PF12704 MacB-like periplasmic core domain RB7232 PF00005 ABC transporter RB7232 PF02687 FtsX-like permease family RB7237 PF00488 MutS domain V RB7237 PF05190 MutS family domain IV RB7237 PF05188 MutS domain II RB7237 PF05192 MutS domain III RB7237 PF01624 MutS domain I RB7238 PF00012 Hsp70 protein RB724 PF00884 Sulfatase RB7244 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RB7247 PF03951 Glutamine synthetase, beta-Grasp domain RB7247 PF00120 Glutamine synthetase, catalytic domain RB7259 PF08264 Anticodon-binding domain of tRNA RB7259 PF00133 tRNA synthetases class I (I, L, M and V) RB7260 PF00551 Formyl transferase RB7275 PF00202 Aminotransferase class-III RB7276 PF00550 Phosphopantetheine attachment site RB7276 PF13193 AMP-binding enzyme C-terminal domain RB7276 PF00501 AMP-binding enzyme RB7276 PF00668 Condensation domain RB7285 PF03279 Bacterial lipid A biosynthesis acyltransferase RB7288 PF00528 Binding-protein-dependent transport system inner membrane component RB7289 PF00005 ABC transporter RB7292 PF12706 Beta-lactamase superfamily domain RB7297 PF08443 RimK-like ATP-grasp domain RB7297 PF18030 RimK PreATP-grasp domain RB7299 PF18030 RimK PreATP-grasp domain RB7299 PF02080 TrkA-C domain RB7299 PF08443 RimK-like ATP-grasp domain RB7300 PF02606 Tetraacyldisaccharide-1-P 4'-kinase RB7301 PF00271 Helicase conserved C-terminal domain RB7301 PF08148 DSHCT (NUC185) domain RB7301 PF00270 DEAD/DEAH box helicase RB7308 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB7308 PF00512 His Kinase A (phospho-acceptor) domain RB7308 PF08448 PAS fold RB7308 PF13188 PAS domain RB7308 PF00072 Response regulator receiver domain RB7314 PF13407 Periplasmic binding protein domain RB7317 PF00271 Helicase conserved C-terminal domain RB7317 PF00270 DEAD/DEAH box helicase RB7359 PF00171 Aldehyde dehydrogenase family RB736 PF17390 Bacterial alpha-L-rhamnosidase C-terminal domain RB736 PF17389 Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain RB736 PF05592 Bacterial alpha-L-rhamnosidase concanavalin-like domain RB736 PF16347 Domain of unknown function (DUF4976) RB736 PF00884 Sulfatase RB7360 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RB7360 PF02154 Flagellar motor switch protein FliM RB7367 PF17820 PDZ domain RB7367 PF13180 PDZ domain RB7368 PF13180 PDZ domain RB7368 PF17820 PDZ domain RB7375 PF01546 Peptidase family M20/M25/M40 RB7375 PF07687 Peptidase dimerisation domain RB7385 PF00106 short chain dehydrogenase RB7388 PF13495 Phage integrase, N-terminal SAM-like domain RB7388 PF00589 Phage integrase family RB7389 PF14319 Transposase zinc-binding domain RB7389 PF04986 Putative transposase RB7399 PF13495 Phage integrase, N-terminal SAM-like domain RB7399 PF00589 Phage integrase family RB7408 PF03572 Peptidase family S41 RB7408 PF13180 PDZ domain RB7410 PF00672 HAMP domain RB7410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB7410 PF18698 Histidine kinase sensor domain RB7410 PF00512 His Kinase A (phospho-acceptor) domain RB7410 PF00989 PAS fold RB7424 PF00266 Aminotransferase class-V RB7425 PF02445 Quinolinate synthetase A protein RB7428 PF04241 Protein of unknown function (DUF423) RB7429 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RB7429 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RB7430 PF01979 Amidohydrolase family RB7431 PF00825 Ribonuclease P RB7435 PF02673 Bacitracin resistance protein BacA RB7437 PF01726 LexA DNA binding domain RB7437 PF00717 Peptidase S24-like RB7443 PF00460 Flagella basal body rod protein RB7443 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RB7444 PF02049 Flagellar hook-basal body complex protein FliE RB745 PF01738 Dienelactone hydrolase family RB7453 PF00266 Aminotransferase class-V RB7461 PF00072 Response regulator receiver domain RB7461 PF00196 Bacterial regulatory proteins, luxR family RB7465 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RB7465 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RB7468 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RB7468 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RB7474 PF01627 Hpt domain RB7474 PF00072 Response regulator receiver domain RB7474 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB7474 PF00512 His Kinase A (phospho-acceptor) domain RB7481 PF16385 Domain of unknown function RB7481 PF00884 Sulfatase RB7482 PF16363 GDP-mannose 4,6 dehydratase RB7488 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB7488 PF00512 His Kinase A (phospho-acceptor) domain RB7494 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RB7494 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RB7500 PF07726 ATPase family associated with various cellular activities (AAA) RB7500 PF17863 AAA lid domain RB7510 PF07075 Protein of unknown function (DUF1343) RB7512 PF00474 Sodium:solute symporter family RB7514 PF13580 SIS domain RB7515 PF01869 BadF/BadG/BcrA/BcrD ATPase family RB7546 PF02219 Methylenetetrahydrofolate reductase RB7560 PF00884 Sulfatase RB7562 PF00135 Carboxylesterase family RB7564 PF00266 Aminotransferase class-V RB7569 PF06827 Zinc finger found in FPG and IleRS RB7569 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RB7569 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RB7572 PF00365 Phosphofructokinase RB7578 PF02599 Global regulator protein family RB7579 PF00072 Response regulator receiver domain RB7579 PF00158 Sigma-54 interaction domain RB7579 PF02954 Bacterial regulatory protein, Fis family RB7580 PF08543 Phosphomethylpyrimidine kinase RB7583 PF03099 Biotin/lipoate A/B protein ligase family RB7584 PF00266 Aminotransferase class-V RB7585 PF02347 Glycine cleavage system P-protein RB7586 PF01597 Glycine cleavage H-protein RB7587 PF01571 Aminomethyltransferase folate-binding domain RB7587 PF08669 Glycine cleavage T-protein C-terminal barrel domain RB7590 PF00675 Insulinase (Peptidase family M16) RB7590 PF05193 Peptidase M16 inactive domain RB7598 PF14864 Alkyl sulfatase C-terminal RB7598 PF14863 Alkyl sulfatase dimerisation RB7598 PF00753 Metallo-beta-lactamase superfamily RB760 PF16347 Domain of unknown function (DUF4976) RB760 PF00884 Sulfatase RB7600 PF00749 tRNA synthetases class I (E and Q), catalytic domain RB7615 PF00583 Acetyltransferase (GNAT) family RB7616 PF02589 LUD domain RB7618 PF13183 4Fe-4S dicluster domain RB7618 PF11870 Domain of unknown function (DUF3390) RB7618 PF02589 LUD domain RB7619 PF02754 Cysteine-rich domain RB7623 PF00206 Lyase RB7623 PF10415 Fumarase C C-terminus RB7625 PF02447 GntP family permease RB7627 PF00013 KH domain RB7627 PF01966 HD domain RB7627 PF12072 Domain of unknown function (DUF3552) RB7629 PF01171 PP-loop family RB763 PF00884 Sulfatase RB7633 PF00005 ABC transporter RB7634 PF12679 ABC-2 family transporter protein RB7643 PF00535 Glycosyl transferase family 2 RB7652 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RB7652 PF00056 lactate/malate dehydrogenase, NAD binding domain RB7661 PF00155 Aminotransferase class I and II RB7662 PF00475 Imidazoleglycerol-phosphate dehydratase RB7675 PF02386 Cation transport protein RB7705 PF00994 Probable molybdopterin binding domain RB772 PF16385 Domain of unknown function RB772 PF00884 Sulfatase RB773 PF00884 Sulfatase RB773 PF16385 Domain of unknown function RB7769 PF00884 Sulfatase RB7769 PF16385 Domain of unknown function RB7772 PF00884 Sulfatase RB7773 PF01134 Glucose inhibited division protein A RB7773 PF13932 GidA associated domain RB7781 PF00211 Adenylate and Guanylate cyclase catalytic domain RB7798 PF03793 PASTA domain RB7798 PF00069 Protein kinase domain RB7803 PF01208 Uroporphyrinogen decarboxylase (URO-D) RB7807 PF02390 Putative methyltransferase RB7812 PF00378 Enoyl-CoA hydratase/isomerase RB7818 PF00164 Ribosomal protein S12/S23 RB7820 PF00177 Ribosomal protein S7p/S5e RB7821 PF14492 Elongation Factor G, domain II RB7821 PF00009 Elongation factor Tu GTP binding domain RB7821 PF00679 Elongation factor G C-terminus RB7821 PF03144 Elongation factor Tu domain 2 RB7821 PF03764 Elongation factor G, domain IV RB7823 PF00155 Aminotransferase class I and II RB7829 PF00338 Ribosomal protein S10p/S20e RB783 PF01758 Sodium Bile acid symporter family RB7833 PF00297 Ribosomal protein L3 RB7834 PF00573 Ribosomal protein L4/L1 family RB7836 PF00276 Ribosomal protein L23 RB7837 PF03947 Ribosomal Proteins L2, C-terminal domain RB7837 PF00181 Ribosomal Proteins L2, RNA binding domain RB7838 PF00203 Ribosomal protein S19 RB7839 PF00237 Ribosomal protein L22p/L17e RB7840 PF07650 KH domain RB7840 PF00189 Ribosomal protein S3, C-terminal domain RB7841 PF00252 Ribosomal protein L16p/L10e RB7846 PF00831 Ribosomal L29 protein RB7849 PF00366 Ribosomal protein S17 RB7850 PF00238 Ribosomal protein L14p/L23e RB7851 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 RB7851 PF00467 KOW motif RB7852 PF00281 Ribosomal protein L5 RB7852 PF00673 ribosomal L5P family C-terminus RB7854 PF00253 Ribosomal protein S14p/S29e RB7855 PF00410 Ribosomal protein S8 RB7856 PF00347 Ribosomal protein L6 RB7857 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RB7859 PF00333 Ribosomal protein S5, N-terminal domain RB7859 PF03719 Ribosomal protein S5, C-terminal domain RB7863 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RB7866 PF00344 SecY translocase RB7875 PF00884 Sulfatase RB7879 PF00884 Sulfatase RB7883 PF08676 MutL C terminal dimerisation domain RB7883 PF01119 DNA mismatch repair protein, C-terminal domain RB7885 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RB7894 PF03144 Elongation factor Tu domain 2 RB7894 PF00009 Elongation factor Tu GTP binding domain RB7894 PF03143 Elongation factor Tu C-terminal domain RB7898 PF02357 Transcription termination factor nusG RB7898 PF00467 KOW motif RB7899 PF03946 Ribosomal protein L11, N-terminal domain RB7899 PF00298 Ribosomal protein L11, RNA binding domain RB7900 PF01641 SelR domain RB7903 PF00005 ABC transporter RB7903 PF12857 TOBE-like domain RB7911 PF13180 PDZ domain RB7919 PF03793 PASTA domain RB7919 PF00069 Protein kinase domain RB7928 PF00069 Protein kinase domain RB7940 PF01432 Peptidase family M3 RB7941 PF00009 Elongation factor Tu GTP binding domain RB7943 PF01507 Phosphoadenosine phosphosulfate reductase family RB7945 PF02527 rRNA small subunit methyltransferase G RB7957 PF01131 DNA topoisomerase RB7957 PF01751 Toprim domain RB7957 PF13368 Topoisomerase C-terminal repeat RB7959 PF00005 ABC transporter RB7959 PF17755 UvrA DNA-binding domain RB7959 PF17760 UvrA interaction domain RB7960 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain RB7967 PF00425 chorismate binding enzyme RB7967 PF04715 Anthranilate synthase component I, N terminal region RB7985 PF01112 Asparaginase RB7995 PF00884 Sulfatase RB8 PF00176 SNF2 family N-terminal domain RB8 PF12419 SNF2 Helicase protein RB8 PF00271 Helicase conserved C-terminal domain RB8002 PF00884 Sulfatase RB8026 PF03781 Sulfatase-modifying factor enzyme 1 RB8028 PF00069 Protein kinase domain RB8028 PF03793 PASTA domain RB8030 PF16385 Domain of unknown function RB8030 PF00884 Sulfatase RB8031 PF10282 Lactonase, 7-bladed beta-propeller RB8035 PF02254 TrkA-N domain RB8035 PF02080 TrkA-C domain RB8038 PF01968 Hydantoinase/oxoprolinase RB8038 PF05378 Hydantoinase/oxoprolinase N-terminal region RB8049 PF03477 ATP cone domain RB8060 PF08032 RNA 2'-O ribose methyltransferase substrate binding RB8060 PF00588 SpoU rRNA Methylase family RB8062 PF13307 Helicase C-terminal domain RB8062 PF04851 Type III restriction enzyme, res subunit RB807 PF01609 Transposase DDE domain RB807 PF13808 DDE_Tnp_1-associated RB8073 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain RB8073 PF04616 Glycosyl hydrolases family 43 RB8076 PF03652 Holliday junction resolvase RB8078 PF16385 Domain of unknown function RB8078 PF00884 Sulfatase RB8080 PF00977 Histidine biosynthesis protein RB8082 PF04244 Deoxyribodipyrimidine photo-lyase-related protein RB8102 PF07963 Prokaryotic N-terminal methylation motif RB8102 PF14245 Type IV pilin PilA RB8113 PF00005 ABC transporter RB8113 PF13732 Domain of unknown function (DUF4162) RB8116 PF00392 Bacterial regulatory proteins, gntR family RB8123 PF07977 FabA-like domain RB8126 PF01063 Amino-transferase class IV RB8134 PF00004 ATPase family associated with various cellular activities (AAA) RB8134 PF16193 AAA C-terminal domain RB8134 PF12002 MgsA AAA+ ATPase C terminal RB8140 PF00578 AhpC/TSA family RB8149 PF02599 Global regulator protein family RB815 PF13333 Integrase core domain RB815 PF00665 Integrase core domain RB815 PF13276 HTH-like domain RB8152 PF02082 Transcriptional regulator RB8161 PF03372 Endonuclease/Exonuclease/phosphatase family RB8173 PF17863 AAA lid domain RB8173 PF07726 ATPase family associated with various cellular activities (AAA) RB818 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) RB8189 PF00271 Helicase conserved C-terminal domain RB8189 PF00270 DEAD/DEAH box helicase RB8189 PF03880 DbpA RNA binding domain RB8205 PF02245 Methylpurine-DNA glycosylase (MPG) RB8208 PF01979 Amidohydrolase family RB8210 PF03412 Peptidase C39 family RB8210 PF00005 ABC transporter RB8210 PF00664 ABC transporter transmembrane region RB8219 PF00155 Aminotransferase class I and II RB8221 PF01053 Cys/Met metabolism PLP-dependent enzyme RB8222 PF00561 alpha/beta hydrolase fold RB8222 PF07021 Methionine biosynthesis protein MetW RB8233 PF00762 Ferrochelatase RB8238 PF00578 AhpC/TSA family RB8238 PF10417 C-terminal domain of 1-Cys peroxiredoxin RB8240 PF14849 YidC periplasmic domain RB8240 PF13180 PDZ domain RB8240 PF02096 60Kd inner membrane protein RB8248 PF01738 Dienelactone hydrolase family RB8253 PF01336 OB-fold nucleic acid binding domain RB8253 PF00152 tRNA synthetases class II (D, K and N) RB8253 PF02938 GAD domain RB8254 PF13520 Amino acid permease RB8260 PF02594 Uncharacterised ACR, YggU family COG1872 RB8262 PF18327 Proline utilization A proline dehydrogenase N-terminal domain RB8262 PF14850 DNA-binding domain of Proline dehydrogenase RB8262 PF01619 Proline dehydrogenase RB8262 PF00171 Aldehyde dehydrogenase family RB8265 PF03061 Thioesterase superfamily RB8268 PF01795 MraW methylase family RB8274 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB8274 PF00512 His Kinase A (phospho-acceptor) domain RB8274 PF00989 PAS fold RB8284 PF02272 DHHA1 domain RB8284 PF01368 DHH family RB8286 PF01687 Riboflavin kinase RB8286 PF06574 FAD synthetase RB8287 PF01256 Carbohydrate kinase RB8290 PF02254 TrkA-N domain RB8290 PF07885 Ion channel RB8291 PF00731 AIR carboxylase RB8293 PF00764 Arginosuccinate synthase RB8300 PF02580 D-Tyr-tRNA(Tyr) deacylase RB8310 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit RB8311 PF03793 PASTA domain RB8311 PF00069 Protein kinase domain RB8316 PF04539 Sigma-70 region 3 RB8316 PF04542 Sigma-70 region 2 RB8316 PF04545 Sigma-70, region 4 RB832 PF00873 AcrB/AcrD/AcrF family RB8320 PF00448 SRP54-type protein, GTPase domain RB8323 PF00771 FHIPEP family RB8326 PF03793 PASTA domain RB8326 PF00069 Protein kinase domain RB8328 PF01336 OB-fold nucleic acid binding domain RB8328 PF01966 HD domain RB8329 PF06508 Queuosine biosynthesis protein QueC RB8359 PF02686 Glu-tRNAGln amidotransferase C subunit RB8363 PF07687 Peptidase dimerisation domain RB8363 PF01546 Peptidase family M20/M25/M40 RB8368 PF00581 Rhodanese-like domain RB8368 PF17773 UPF0176 acylphosphatase like domain RB8374 PF00117 Glutamine amidotransferase class-I RB8374 PF00958 GMP synthase C terminal domain RB8374 PF02540 NAD synthase RB8375 PF12848 ABC transporter RB8375 PF00005 ABC transporter RB8383 PF00343 Carbohydrate phosphorylase RB8397 PF04851 Type III restriction enzyme, res subunit RB8397 PF00271 Helicase conserved C-terminal domain RB8397 PF02151 UvrB/uvrC motif RB8397 PF12344 Ultra-violet resistance protein B RB8397 PF17757 UvrB interaction domain RB8399 PF00265 Thymidine kinase RB8402 PF00773 RNB domain RB8402 PF00575 S1 RNA binding domain RB8402 PF08206 Ribonuclease B OB domain RB8402 PF17876 Cold shock domain RB8404 PF02146 Sir2 family RB841 PF00082 Subtilase family RB8418 PF17764 3′ DNA-binding domain (3′BD) RB8418 PF18074 Primosomal protein N C-terminal domain RB8418 PF18319 PriA DNA helicase Cys-rich region (CRR) domain RB8418 PF00271 Helicase conserved C-terminal domain RB8418 PF04851 Type III restriction enzyme, res subunit RB8423 PF00884 Sulfatase RB8455 PF01467 Cytidylyltransferase-like RB8459 PF01084 Ribosomal protein S18 RB8469 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RB8469 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RB8476 PF05698 Bacterial trigger factor protein (TF) C-terminus RB8482 PF02666 Phosphatidylserine decarboxylase RB8492 PF04542 Sigma-70 region 2 RB8492 PF08281 Sigma-70, region 4 RB8494 PF01478 Type IV leader peptidase family RB8494 PF06750 Bacterial Peptidase A24 N-terminal domain RB8498 PF00875 DNA photolyase RB8498 PF03441 FAD binding domain of DNA photolyase RB8510 PF03447 Homoserine dehydrogenase, NAD binding domain RB8510 PF01842 ACT domain RB8510 PF00742 Homoserine dehydrogenase RB8515 PF11798 IMS family HHH motif RB8515 PF11799 impB/mucB/samB family C-terminal domain RB8515 PF00817 impB/mucB/samB family RB8522 PF00588 SpoU rRNA Methylase family RB8522 PF08032 RNA 2'-O ribose methyltransferase substrate binding RB8524 PF13193 AMP-binding enzyme C-terminal domain RB8524 PF00501 AMP-binding enzyme RB8531 PF00902 Sec-independent protein translocase protein (TatC) RB8533 PF01965 DJ-1/PfpI family RB8540 PF00696 Amino acid kinase family RB8540 PF00583 Acetyltransferase (GNAT) family RB8541 PF05343 M42 glutamyl aminopeptidase RB8543 PF02272 DHHA1 domain RB8543 PF01411 tRNA synthetases class II (A) RB8543 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RB8547 PF01321 Creatinase/Prolidase N-terminal domain RB8547 PF00557 Metallopeptidase family M24 RB8548 PF00364 Biotin-requiring enzyme RB8550 PF00289 Biotin carboxylase, N-terminal domain RB8550 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RB8550 PF02785 Biotin carboxylase C-terminal domain RB8555 PF00069 Protein kinase domain RB8555 PF03793 PASTA domain RB856 PF00056 lactate/malate dehydrogenase, NAD binding domain RB856 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RB8562 PF01676 Metalloenzyme superfamily RB8562 PF06415 BPG-independent PGAM N-terminus (iPGM_N) RB8563 PF01152 Bacterial-like globin RB8574 PF04371 Porphyromonas-type peptidyl-arginine deiminase RB8584 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RB8588 PF00381 PTS HPr component phosphorylation site RB8591 PF00391 PEP-utilising enzyme, mobile domain RB8591 PF02896 PEP-utilising enzyme, TIM barrel domain RB8591 PF05524 PEP-utilising enzyme, N-terminal RB8595 PF10150 Ribonuclease E/G family RB8595 PF12111 Polyribonucleotide phosphorylase C terminal RB8595 PF00575 S1 RNA binding domain RB8596 PF16347 Domain of unknown function (DUF4976) RB8596 PF00884 Sulfatase RB8597 PF00884 Sulfatase RB8598 PF00384 Molybdopterin oxidoreductase RB8604 PF01578 Cytochrome C assembly protein RB861 PF01618 MotA/TolQ/ExbB proton channel family RB8629 PF05685 Putative restriction endonuclease RB8633 PF00202 Aminotransferase class-III RB8635 PF00149 Calcineurin-like phosphoesterase RB8649 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RB8674 PF02683 Cytochrome C biogenesis protein transmembrane region RB8674 PF17991 Thioredoxin like C-terminal domain RB8674 PF00578 AhpC/TSA family RB8677 PF18073 Rubredoxin metal binding domain RB8680 PF10996 Beta-Casp domain RB8680 PF00753 Metallo-beta-lactamase superfamily RB8680 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain RB8686 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RB8686 PF13378 Enolase C-terminal domain-like RB8687 PF00144 Beta-lactamase RB8693 PF00005 ABC transporter RB8695 PF00392 Bacterial regulatory proteins, gntR family RB8701 PF08281 Sigma-70, region 4 RB8701 PF04542 Sigma-70 region 2 RB8707 PF00482 Type II secretion system (T2SS), protein F RB8711 PF00482 Type II secretion system (T2SS), protein F RB8725 PF00471 Ribosomal protein L33 RB8726 PF17768 RecJ OB domain RB8726 PF02272 DHHA1 domain RB8726 PF01368 DHH family RB8726 PF10141 Single-strand DNA-specific exonuclease, C terminal domain RB8728 PF00106 short chain dehydrogenase RB8731 PF00294 pfkB family carbohydrate kinase RB8741 PF07736 Chorismate mutase type I RB8745 PF00158 Sigma-54 interaction domain RB8745 PF02954 Bacterial regulatory protein, Fis family RB8745 PF01590 GAF domain RB8747 PF02441 Flavoprotein RB8747 PF04127 DNA / pantothenate metabolism flavoprotein RB8748 PF01180 Dihydroorotate dehydrogenase RB8759 PF13519 von Willebrand factor type A domain RB8763 PF13519 von Willebrand factor type A domain RB8767 PF01882 Protein of unknown function DUF58 RB8768 PF17863 AAA lid domain RB8768 PF07726 ATPase family associated with various cellular activities (AAA) RB8777 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RB8777 PF07497 Rho termination factor, RNA-binding domain RB8777 PF07498 Rho termination factor, N-terminal domain RB8779 PF03315 Serine dehydratase beta chain RB8779 PF03313 Serine dehydratase alpha chain RB8788 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RB8788 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RB8792 PF07676 WD40-like Beta Propeller Repeat RB8792 PF12566 Protein of unknown function (DUF3748) RB8797 PF00474 Sodium:solute symporter family RB8798 PF00701 Dihydrodipicolinate synthetase family RB8799 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RB8799 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RB8812 PF00156 Phosphoribosyl transferase domain RB8816 PF08281 Sigma-70, region 4 RB8816 PF04542 Sigma-70 region 2 RB8820 PF02599 Global regulator protein family RB8823 PF01476 LysM domain RB8823 PF00756 Putative esterase RB8824 PF14437 MafB19-like deaminase RB8827 PF03109 ABC1 family RB8834 PF01545 Cation efflux family RB8840 PF00708 Acylphosphatase RB8841 PF03989 DNA gyrase C-terminal domain, beta-propeller RB8841 PF00521 DNA gyrase/topoisomerase IV, subunit A RB8843 PF00004 ATPase family associated with various cellular activities (AAA) RB8843 PF17866 AAA lid domain RB8853 PF00195 Chalcone and stilbene synthases, N-terminal domain RB8853 PF02797 Chalcone and stilbene synthases, C-terminal domain RB8854 PF01494 FAD binding domain RB8859 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RB8859 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RB8861 PF01790 Prolipoprotein diacylglyceryl transferase RB8870 PF01883 Iron-sulfur cluster assembly protein RB8870 PF10609 NUBPL iron-transfer P-loop NTPase RB8872 PF00230 Major intrinsic protein RB8873 PF00512 His Kinase A (phospho-acceptor) domain RB8873 PF00072 Response regulator receiver domain RB8873 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB8873 PF09308 LuxQ, periplasmic RB8889 PF09423 PhoD-like phosphatase RB8889 PF16655 PhoD-like phosphatase, N-terminal domain RB8892 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RB8892 PF00034 Cytochrome c RB8895 PF13859 BNR repeat-like domain RB8895 PF14873 N-terminal domain of BNR-repeat neuraminidase RB8905 PF00535 Glycosyl transferase family 2 RB8913 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase RB8919 PF08264 Anticodon-binding domain of tRNA RB8919 PF00133 tRNA synthetases class I (I, L, M and V) RB8919 PF13603 Leucyl-tRNA synthetase, Domain 2 RB8921 PF01757 Acyltransferase family RB8924 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase RB8924 PF01676 Metalloenzyme superfamily RB8926 PF13840 ACT domain RB8926 PF01842 ACT domain RB8926 PF00696 Amino acid kinase family RB8929 PF00069 Protein kinase domain RB8929 PF03793 PASTA domain RB8935 PF01266 FAD dependent oxidoreductase RB8937 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RB8937 PF07992 Pyridine nucleotide-disulphide oxidoreductase RB8941 PF00171 Aldehyde dehydrogenase family RB8966 PF00118 TCP-1/cpn60 chaperonin family RB8969 PF00166 Chaperonin 10 Kd subunit RB8970 PF00118 TCP-1/cpn60 chaperonin family RB8972 PF00226 DnaJ domain RB8972 PF01556 DnaJ C terminal domain RB8972 PF00684 DnaJ central domain RB8974 PF01025 GrpE RB8978 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain RB8978 PF00753 Metallo-beta-lactamase superfamily RB8978 PF10996 Beta-Casp domain RB8979 PF03313 Serine dehydratase alpha chain RB8983 PF17863 AAA lid domain RB8983 PF07726 ATPase family associated with various cellular activities (AAA) RB8985 PF04480 Protein of unknown function (DUF559) RB9012 PF08534 Redoxin RB9019 PF03793 PASTA domain RB9019 PF00069 Protein kinase domain RB9026 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RB9026 PF10518 TAT (twin-arginine translocation) pathway signal sequence RB9029 PF01431 Peptidase family M13 RB9029 PF05649 Peptidase family M13 RB9076 PF12848 ABC transporter RB9076 PF16326 ABC transporter C-terminal domain RB9076 PF00005 ABC transporter RB9078 PF16078 2-oxoglutarate dehydrogenase N-terminus RB9078 PF16870 2-oxoglutarate dehydrogenase C-terminal RB9078 PF00676 Dehydrogenase E1 component RB9078 PF02779 Transketolase, pyrimidine binding domain RB9084 PF00814 Glycoprotease family RB9089 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase RB9090 PF02548 Ketopantoate hydroxymethyltransferase RB9091 PF16385 Domain of unknown function RB9091 PF00884 Sulfatase RB9103 PF10431 C-terminal, D2-small domain, of ClpB protein RB9103 PF07724 AAA domain (Cdc48 subfamily) RB9103 PF00004 ATPase family associated with various cellular activities (AAA) RB9103 PF02861 Clp amino terminal domain, pathogenicity island component RB9103 PF17871 AAA lid domain RB9105 PF00012 Hsp70 protein RB9107 PF01842 ACT domain RB9107 PF00800 Prephenate dehydratase RB9107 PF01817 Chorismate mutase type II RB9108 PF07726 ATPase family associated with various cellular activities (AAA) RB9108 PF17863 AAA lid domain RB9109 PF01751 Toprim domain RB9109 PF00986 DNA gyrase B subunit, carboxyl terminus RB9109 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB9109 PF00204 DNA gyrase B RB9113 PF01965 DJ-1/PfpI family RB9115 PF02021 Uncharacterised protein family UPF0102 RB9116 PF07687 Peptidase dimerisation domain RB9116 PF01546 Peptidase family M20/M25/M40 RB9119 PF03448 MgtE intracellular N domain RB9119 PF00571 CBS domain RB9119 PF01769 Divalent cation transporter RB9120 PF16353 Domain of unknown function(DUF4981) RB9120 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RB9120 PF02929 Beta galactosidase small chain RB9120 PF02837 Glycosyl hydrolases family 2, sugar binding domain RB9128 PF10755 Protein of unknown function (DUF2585) RB9132 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RB9132 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RB9133 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RB9134 PF01479 S4 domain RB9134 PF00579 tRNA synthetases class I (W and Y) RB9141 PF05175 Methyltransferase small domain RB9168 PF16363 GDP-mannose 4,6 dehydratase RB9169 PF02350 UDP-N-acetylglucosamine 2-epimerase RB9174 PF07963 Prokaryotic N-terminal methylation motif RB9174 PF00114 Pilin (bacterial filament) RB918 PF00589 Phage integrase family RB918 PF13495 Phage integrase, N-terminal SAM-like domain RB9188 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RB9188 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RB9192 PF00884 Sulfatase RB9192 PF16347 Domain of unknown function (DUF4976) RB9200 PF13344 Haloacid dehalogenase-like hydrolase RB9210 PF00266 Aminotransferase class-V RB9215 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RB9215 PF00364 Biotin-requiring enzyme RB9215 PF02817 e3 binding domain RB9218 PF03853 YjeF-related protein N-terminus RB9237 PF00535 Glycosyl transferase family 2 RB9238 PF01531 Glycosyl transferase family 11 RB925 PF14319 Transposase zinc-binding domain RB925 PF04986 Putative transposase RB9255 PF01134 Glucose inhibited division protein A RB9255 PF13932 GidA associated domain RB9268 PF06289 Flagellar and Swarming motility proteins RB9269 PF01618 MotA/TolQ/ExbB proton channel family RB927 PF13495 Phage integrase, N-terminal SAM-like domain RB927 PF00589 Phage integrase family RB9271 PF13677 Membrane MotB of proton-channel complex MotA/MotB RB9271 PF00691 OmpA family RB9275 PF04509 CheC-like family RB9275 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RB9278 PF01593 Flavin containing amine oxidoreductase RB9280 PF01593 Flavin containing amine oxidoreductase RB9288 PF02401 LytB protein RB9292 PF00128 Alpha amylase, catalytic domain RB9292 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RB9304 PF01197 Ribosomal protein L31 RB9305 PF00472 RF-1 domain RB9305 PF03462 PCRF domain RB9306 PF05175 Methyltransferase small domain RB9306 PF17827 PrmC N-terminal domain RB9317 PF00069 Protein kinase domain RB9330 PF10425 C-terminus of bacterial fibrinogen-binding adhesin RB9330 PF04650 YSIRK type signal peptide RB9330 PF17210 SdrD B-like domain RB9330 PF00746 LPXTG cell wall anchor motif RB9330 PF17961 Bacterial Ig domain RB934 PF04986 Putative transposase RB934 PF14319 Transposase zinc-binding domain RB9344 PF12419 SNF2 Helicase protein RB9344 PF00271 Helicase conserved C-terminal domain RB9344 PF00176 SNF2 family N-terminal domain RB9359 PF05189 RNA 3'-terminal phosphate cyclase (RTC), insert domain RB9359 PF01137 RNA 3'-terminal phosphate cyclase RB9364 PF00158 Sigma-54 interaction domain RB9364 PF06956 Regulator of RNA terminal phosphate cyclase RB9367 PF01261 Xylose isomerase-like TIM barrel RB9367 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RB9372 PF00117 Glutamine amidotransferase class-I RB9374 PF16124 RecQ zinc-binding RB9374 PF00570 HRDC domain RB9374 PF00271 Helicase conserved C-terminal domain RB9374 PF00270 DEAD/DEAH box helicase RB9374 PF09382 RQC domain RB9382 PF13180 PDZ domain RB9382 PF17820 PDZ domain RB9384 PF02653 Branched-chain amino acid transport system / permease component RB9385 PF00005 ABC transporter RB9386 PF00578 AhpC/TSA family RB9395 PF03176 MMPL family RB9401 PF04055 Radical SAM superfamily RB9401 PF00919 Uncharacterized protein family UPF0004 RB9401 PF01938 TRAM domain RB9402 PF05193 Peptidase M16 inactive domain RB9402 PF00675 Insulinase (Peptidase family M16) RB9404 PF00675 Insulinase (Peptidase family M16) RB9404 PF05193 Peptidase M16 inactive domain RB9418 PF00360 Phytochrome region RB9418 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB9418 PF08446 PAS fold RB9418 PF01590 GAF domain RB9418 PF00512 His Kinase A (phospho-acceptor) domain RB9420 PF00664 ABC transporter transmembrane region RB9420 PF00005 ABC transporter RB9427 PF00092 von Willebrand factor type A domain RB9428 PF00512 His Kinase A (phospho-acceptor) domain RB9428 PF00672 HAMP domain RB9428 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RB9428 PF00989 PAS fold RB9431 PF00486 Transcriptional regulatory protein, C terminal RB9431 PF00072 Response regulator receiver domain RB9435 PF00069 Protein kinase domain RB945 PF02652 L-lactate permease RB9470 PF17941 Polyphosphate kinase C-terminal domain 1 RB9470 PF02503 Polyphosphate kinase middle domain RB9470 PF13089 Polyphosphate kinase N-terminal domain RB9470 PF13090 Polyphosphate kinase C-terminal domain 2 RB9477 PF00005 ABC transporter RB9478 PF10672 S-adenosylmethionine-dependent methyltransferase RB9488 PF03601 Conserved hypothetical protein 698 RB9493 PF13673 Acetyltransferase (GNAT) domain RB9494 PF02678 Pirin RB9494 PF05726 Pirin C-terminal cupin domain RB9498 PF00884 Sulfatase RB9499 PF07726 ATPase family associated with various cellular activities (AAA) RB9499 PF17863 AAA lid domain RB950 PF13520 Amino acid permease RB9522 PF11742 Protein of unknown function (DUF3302) RB9526 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RB9526 PF00529 HlyD membrane-fusion protein of T1SS RB9530 PF00884 Sulfatase RB9533 PF13396 Phospholipase_D-nuclease N-terminal RB9533 PF13091 PLD-like domain RB9541 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RB9542 PF00873 AcrB/AcrD/AcrF family RB9543 PF01594 AI-2E family transporter RB9549 PF00884 Sulfatase RB9551 PF02374 Anion-transporting ATPase RB9555 PF06953 Arsenical resistance operon trans-acting repressor ArsD RB956 PF14319 Transposase zinc-binding domain RB956 PF04986 Putative transposase RB9565 PF00561 alpha/beta hydrolase fold RB957 PF02899 Phage integrase, N-terminal SAM-like domain RB957 PF00589 Phage integrase family RB9570 PF00158 Sigma-54 interaction domain RB9570 PF01590 GAF domain RB9572 PF07995 Glucose / Sorbosone dehydrogenase RB9581 PF01638 HxlR-like helix-turn-helix RB9584 PF00109 Beta-ketoacyl synthase, N-terminal domain RB9584 PF14765 Polyketide synthase dehydratase RB9584 PF00550 Phosphopantetheine attachment site RB9584 PF08659 KR domain RB9584 PF02801 Beta-ketoacyl synthase, C-terminal domain RB9584 PF16197 Ketoacyl-synthetase C-terminal extension RB9584 PF00107 Zinc-binding dehydrogenase RB9584 PF08240 Alcohol dehydrogenase GroES-like domain RB9584 PF00698 Acyl transferase domain RB9585 PF00296 Luciferase-like monooxygenase RB9586 PF00106 short chain dehydrogenase RB9592 PF10127 RNA repair pathway DNA polymerase beta family RB9611 PF12704 MacB-like periplasmic core domain RB9611 PF02687 FtsX-like permease family RB9611 PF00005 ABC transporter RB9612 PF00664 ABC transporter transmembrane region RB9612 PF00005 ABC transporter RB962 PF13495 Phage integrase, N-terminal SAM-like domain RB962 PF00589 Phage integrase family RB9623 PF00535 Glycosyl transferase family 2 RB9637 PF00535 Glycosyl transferase family 2 RB9643 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RB9650 PF00884 Sulfatase RB9650 PF16347 Domain of unknown function (DUF4976) RB9654 PF07085 DRTGG domain RB9654 PF01515 Phosphate acetyl/butaryl transferase RB9655 PF00871 Acetokinase family RB9657 PF00248 Aldo/keto reductase family RB9658 PF09905 DNA-binding protein VF530 RB9659 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RB9661 PF12833 Helix-turn-helix domain RB9661 PF12852 Cupin RB9674 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RB9674 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RB9687 PF06812 ImpA, N-terminal, type VI secretion system RB9689 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 RB9690 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath RB9696 PF05947 Type VI secretion system, TssF RB9699 PF06715 Gp5 C-terminal repeat (3 copies) RB9699 PF04717 Type VI secretion system, phage-baseplate injector RB973 PF00884 Sulfatase RB973 PF16347 Domain of unknown function (DUF4976) RB974 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 RB9745 PF00069 Protein kinase domain RB9745 PF03793 PASTA domain RB9748 PF01180 Dihydroorotate dehydrogenase RB9755 PF00884 Sulfatase RB9766 PF00004 ATPase family associated with various cellular activities (AAA) RB9766 PF17862 AAA+ lid domain RB9766 PF01434 Peptidase family M41 RB977 PF13382 Adenine deaminase C-terminal domain RB977 PF01979 Amidohydrolase family RB9790 PF01230 HIT domain RB9791 PF04002 RadC-like JAB domain RB9794 PF00543 Nitrogen regulatory protein P-II RB9795 PF01118 Semialdehyde dehydrogenase, NAD binding domain RB9795 PF02774 Semialdehyde dehydrogenase, dimerisation domain RB9808 PF01078 Magnesium chelatase, subunit ChlI RB9808 PF13335 Magnesium chelatase, subunit ChlI C-terminal RB9823 PF01380 SIS domain RB9823 PF00571 CBS domain RB9828 PF01566 Natural resistance-associated macrophage protein RB9832 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RB9832 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RB9832 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RB9832 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RB9834 PF07969 Amidohydrolase family RB9835 PF02741 FTR, proximal lobe RB9835 PF01913 Formylmethanofuran-tetrahydromethanopterin formyltransferase RB9840 PF13567 Domain of unknown function (DUF4131) RB9840 PF03772 Competence protein RB9840 PF00753 Metallo-beta-lactamase superfamily RB9848 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain RB9848 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain RB9848 PF01488 Shikimate / quinate 5-dehydrogenase RB9854 PF03793 PASTA domain RB9854 PF00069 Protein kinase domain RB9857 PF02574 Homocysteine S-methyltransferase RB9857 PF02310 B12 binding domain RB9857 PF00809 Pterin binding enzyme RB9857 PF02607 B12 binding domain RB9857 PF02965 Vitamin B12 dependent methionine synthase, activation domain RB9860 PF04909 Amidohydrolase RB9869 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain RB9869 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain RB9871 PF01842 ACT domain RB9871 PF10369 Small subunit of acetolactate synthase RB9874 PF02616 Segregation and condensation protein ScpA RB9876 PF06969 HemN C-terminal domain RB9876 PF04055 Radical SAM superfamily RB9892 PF01654 Cytochrome bd terminal oxidase subunit I RB9894 PF02322 Cytochrome bd terminal oxidase subunit II RB990 PF07690 Major Facilitator Superfamily RB9911 PF00331 Glycosyl hydrolase family 10 RB9916 PF03948 Ribosomal protein L9, C-terminal domain RB9916 PF01281 Ribosomal protein L9, N-terminal domain RB9917 PF00436 Single-strand binding protein family RB9920 PF01250 Ribosomal protein S6 RB9922 PF01195 Peptidyl-tRNA hydrolase RB9923 PF14693 Ribosomal protein TL5, C-terminal domain RB9923 PF01386 Ribosomal L25p family RB9927 PF06689 ClpX C4-type zinc finger RB9927 PF10431 C-terminal, D2-small domain, of ClpB protein RB9927 PF07724 AAA domain (Cdc48 subfamily) RB993 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family RB9942 PF02527 rRNA small subunit methyltransferase G RB9943 PF07670 Nucleoside recognition RB9943 PF07662 Na+ dependent nucleoside transporter C-terminus RB9943 PF01773 Na+ dependent nucleoside transporter N-terminus RB9952 PF01975 Survival protein SurE RB9953 PF02696 Uncharacterized ACR, YdiU/UPF0061 family RB9971 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RB9971 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RB9979 PF01624 MutS domain I RB9979 PF00488 MutS domain V RB9979 PF05190 MutS family domain IV RB9979 PF05192 MutS domain III RB9979 PF05188 MutS domain II RB9983 PF01238 Phosphomannose isomerase type I RB9992 PF01458 Uncharacterized protein family (UPF0051) RB9995 PF01458 Uncharacterized protein family (UPF0051) RB9998 PF00005 ABC transporter